Query 048780
Match_columns 325
No_of_seqs 392 out of 1607
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 13:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.5E-55 3.2E-60 401.6 40.3 321 1-325 383-788 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.2E-54 7E-59 392.9 40.4 321 1-325 450-846 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3E-49 6.6E-54 356.6 34.1 313 1-325 100-461 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2.6E-49 5.7E-54 364.8 34.3 314 1-325 235-656 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 6E-49 1.3E-53 362.5 33.5 316 2-325 135-624 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-48 3.3E-53 352.1 32.9 310 2-325 137-493 (697)
7 PRK11788 tetratricopeptide rep 99.9 5.7E-19 1.2E-23 150.3 30.0 276 1-325 48-352 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 2.6E-16 5.6E-21 148.0 34.8 305 2-318 547-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 3.1E-15 6.7E-20 140.7 35.7 308 1-320 444-799 (899)
10 PRK11788 tetratricopeptide rep 99.8 3.5E-15 7.6E-20 127.1 28.8 257 25-320 37-311 (389)
11 KOG4422 Uncharacterized conser 99.7 1.5E-14 3.3E-19 116.0 28.4 298 20-322 204-592 (625)
12 PRK15174 Vi polysaccharide exp 99.7 1.1E-12 2.3E-17 118.0 34.7 290 1-320 55-381 (656)
13 KOG4422 Uncharacterized conser 99.7 2.2E-13 4.8E-18 109.4 24.6 285 23-321 116-463 (625)
14 PF13429 TPR_15: Tetratricopep 99.6 2.9E-14 6.3E-19 115.5 12.2 170 109-319 107-276 (280)
15 PRK10747 putative protoheme IX 99.6 1.4E-11 3E-16 104.6 28.4 261 1-319 97-389 (398)
16 TIGR00990 3a0801s09 mitochondr 99.6 2.1E-11 4.6E-16 109.7 30.5 245 2-319 308-570 (615)
17 KOG4318 Bicoid mRNA stability 99.6 3.9E-13 8.4E-18 116.9 17.4 255 9-306 11-286 (1088)
18 PRK11447 cellulose synthase su 99.5 1.3E-10 2.7E-15 111.6 35.9 290 1-320 282-700 (1157)
19 PF13041 PPR_2: PPR repeat fam 99.5 4.9E-14 1.1E-18 81.5 6.3 50 218-267 1-50 (50)
20 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.4E-15 99.7 29.1 267 1-318 97-397 (409)
21 PF13041 PPR_2: PPR repeat fam 99.5 4.4E-14 9.6E-19 81.7 5.5 49 110-158 1-49 (50)
22 TIGR00990 3a0801s09 mitochondr 99.5 4E-10 8.7E-15 101.5 33.3 294 1-320 140-496 (615)
23 PRK11447 cellulose synthase su 99.5 3.3E-10 7.2E-15 108.8 34.5 300 1-324 364-745 (1157)
24 PRK15174 Vi polysaccharide exp 99.5 1.5E-10 3.3E-15 104.3 30.3 253 1-283 89-380 (656)
25 PRK14574 hmsH outer membrane p 99.5 1.2E-09 2.5E-14 99.5 33.3 95 1-102 115-218 (822)
26 COG3071 HemY Uncharacterized e 99.4 1.4E-09 3.1E-14 87.1 28.4 265 2-324 98-394 (400)
27 PRK14574 hmsH outer membrane p 99.4 2.9E-09 6.4E-14 96.9 32.7 287 1-320 47-396 (822)
28 COG2956 Predicted N-acetylgluc 99.4 1.7E-09 3.7E-14 84.4 26.4 110 2-144 49-173 (389)
29 PRK09782 bacteriophage N4 rece 99.4 1.1E-08 2.5E-13 95.1 34.9 203 1-211 57-291 (987)
30 PRK10049 pgaA outer membrane p 99.4 1.4E-08 3E-13 93.6 35.4 95 222-320 361-456 (765)
31 KOG4626 O-linked N-acetylgluco 99.4 1.3E-10 2.9E-15 98.0 19.7 284 2-318 130-449 (966)
32 TIGR02521 type_IV_pilW type IV 99.4 2.8E-09 6E-14 83.8 25.6 203 22-320 30-232 (234)
33 PF13429 TPR_15: Tetratricopep 99.4 1.5E-11 3.3E-16 99.7 12.7 235 1-282 21-275 (280)
34 PRK10049 pgaA outer membrane p 99.4 4E-09 8.7E-14 97.1 29.7 251 1-320 28-339 (765)
35 KOG4626 O-linked N-acetylgluco 99.3 7.2E-10 1.6E-14 93.7 21.5 172 107-325 314-488 (966)
36 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 3.9E-14 85.0 23.3 187 1-282 44-230 (234)
37 KOG2076 RNA polymerase III tra 99.3 1.1E-08 2.4E-13 90.1 29.2 290 1-318 152-510 (895)
38 PRK09782 bacteriophage N4 rece 99.3 5.9E-09 1.3E-13 96.9 28.3 241 2-319 452-705 (987)
39 PRK10747 putative protoheme IX 99.3 2.7E-09 6E-14 90.7 23.6 230 1-282 131-388 (398)
40 KOG1126 DNA-binding cell divis 99.3 2.3E-09 4.9E-14 91.3 22.6 267 3-320 334-620 (638)
41 KOG4318 Bicoid mRNA stability 99.3 1.3E-10 2.9E-15 101.5 14.9 218 103-325 16-270 (1088)
42 PRK12370 invasion protein regu 99.3 6.9E-09 1.5E-13 92.1 25.6 63 113-197 339-401 (553)
43 KOG1155 Anaphase-promoting com 99.2 5.3E-08 1.2E-12 79.8 25.5 183 113-315 331-531 (559)
44 TIGR00540 hemY_coli hemY prote 99.2 5.6E-08 1.2E-12 83.1 27.0 238 1-281 131-396 (409)
45 KOG2002 TPR-containing nuclear 99.2 3.8E-08 8.3E-13 87.4 25.2 99 219-318 645-743 (1018)
46 PRK12370 invasion protein regu 99.2 2.1E-08 4.6E-13 89.0 24.1 216 3-321 319-536 (553)
47 KOG1915 Cell cycle control pro 99.2 6.8E-07 1.5E-11 73.8 29.4 310 1-320 86-536 (677)
48 PF12569 NARP1: NMDA receptor- 99.2 1.5E-07 3.2E-12 81.4 26.9 280 1-319 17-333 (517)
49 KOG1155 Anaphase-promoting com 99.1 3.2E-07 6.9E-12 75.4 23.6 101 216-319 394-494 (559)
50 COG2956 Predicted N-acetylgluc 99.1 4E-07 8.7E-12 71.5 22.7 169 116-321 111-279 (389)
51 KOG2003 TPR repeat-containing 99.0 3.8E-07 8.2E-12 74.9 21.9 87 216-306 622-709 (840)
52 KOG1126 DNA-binding cell divis 99.0 1.2E-07 2.7E-12 81.0 19.8 236 38-320 334-586 (638)
53 PF12854 PPR_1: PPR repeat 99.0 7.5E-10 1.6E-14 57.6 3.8 34 17-50 1-34 (34)
54 KOG1840 Kinesin light chain [C 99.0 6.8E-07 1.5E-11 76.7 23.5 243 1-318 212-477 (508)
55 PRK11189 lipoprotein NlpI; Pro 99.0 2E-06 4.3E-11 70.2 25.5 217 4-321 42-266 (296)
56 PF12854 PPR_1: PPR repeat 99.0 1.1E-09 2.3E-14 57.0 4.2 32 250-281 2-33 (34)
57 KOG1129 TPR repeat-containing 99.0 1.2E-07 2.5E-12 74.6 16.6 54 227-281 402-455 (478)
58 COG3071 HemY Uncharacterized e 99.0 9.7E-07 2.1E-11 71.3 22.1 214 1-282 166-388 (400)
59 KOG2076 RNA polymerase III tra 98.9 7.4E-06 1.6E-10 72.8 26.6 135 167-319 413-554 (895)
60 COG3063 PilF Tfp pilus assembl 98.8 6.9E-06 1.5E-10 61.7 21.7 198 25-318 37-234 (250)
61 PF12569 NARP1: NMDA receptor- 98.8 9.1E-06 2E-10 70.6 25.6 235 1-282 51-332 (517)
62 COG3063 PilF Tfp pilus assembl 98.8 1.6E-05 3.5E-10 59.8 22.9 164 116-321 39-203 (250)
63 KOG1070 rRNA processing protei 98.8 2.8E-06 6.1E-11 78.7 22.7 45 6-52 1443-1487(1710)
64 KOG1129 TPR repeat-containing 98.8 1.3E-06 2.9E-11 68.9 17.6 220 27-319 227-457 (478)
65 KOG0495 HAT repeat protein [RN 98.8 4E-05 8.6E-10 66.3 27.6 250 1-282 597-878 (913)
66 KOG0547 Translocase of outer m 98.7 5.1E-05 1.1E-09 63.3 25.3 128 171-319 363-490 (606)
67 PF04733 Coatomer_E: Coatomer 98.7 7.4E-06 1.6E-10 66.2 19.4 151 120-320 110-265 (290)
68 TIGR00756 PPR pentatricopeptid 98.7 3.6E-08 7.7E-13 52.1 4.2 33 293-325 2-34 (35)
69 KOG0547 Translocase of outer m 98.7 1.3E-05 2.7E-10 66.8 20.6 216 2-282 340-564 (606)
70 PRK11189 lipoprotein NlpI; Pro 98.7 2.6E-05 5.7E-10 63.7 22.6 193 1-296 77-275 (296)
71 KOG3785 Uncharacterized conser 98.7 2.8E-05 6.1E-10 62.3 21.4 96 224-324 397-494 (557)
72 KOG2047 mRNA splicing factor [ 98.7 0.00019 4E-09 62.1 28.0 154 2-159 116-293 (835)
73 PF04733 Coatomer_E: Coatomer 98.6 1E-05 2.2E-10 65.3 18.9 239 1-283 14-264 (290)
74 TIGR00756 PPR pentatricopeptid 98.6 8.7E-08 1.9E-12 50.6 4.6 35 24-58 1-35 (35)
75 TIGR03302 OM_YfiO outer membra 98.6 5.2E-05 1.1E-09 59.9 22.4 177 109-320 30-232 (235)
76 PF13812 PPR_3: Pentatricopept 98.6 8.8E-08 1.9E-12 50.2 4.3 33 292-324 2-34 (34)
77 KOG2002 TPR-containing nuclear 98.6 0.00018 3.9E-09 65.0 26.7 101 218-320 374-481 (1018)
78 KOG2003 TPR repeat-containing 98.6 7.5E-05 1.6E-09 61.9 22.5 298 18-319 196-688 (840)
79 PF13812 PPR_3: Pentatricopept 98.6 1.2E-07 2.7E-12 49.6 4.4 34 23-56 1-34 (34)
80 cd05804 StaR_like StaR_like; a 98.6 0.00018 4E-09 60.6 26.1 281 2-320 20-336 (355)
81 KOG1840 Kinesin light chain [C 98.6 2.5E-05 5.5E-10 67.3 20.5 224 23-318 199-436 (508)
82 KOG1173 Anaphase-promoting com 98.6 0.00024 5.2E-09 60.5 25.0 257 2-303 258-534 (611)
83 KOG1156 N-terminal acetyltrans 98.5 0.00057 1.2E-08 59.2 29.3 312 1-322 54-470 (700)
84 KOG3785 Uncharacterized conser 98.5 0.00025 5.5E-09 57.0 22.6 141 172-317 289-454 (557)
85 KOG1915 Cell cycle control pro 98.5 0.00054 1.2E-08 57.3 29.2 261 1-284 154-536 (677)
86 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.6E-05 5.6E-10 65.3 16.2 127 167-318 168-295 (395)
87 KOG1125 TPR repeat-containing 98.4 0.0003 6.6E-09 60.0 22.0 73 1-78 298-382 (579)
88 PRK10370 formate-dependent nit 98.4 0.00017 3.6E-09 55.1 18.7 147 118-283 22-172 (198)
89 KOG1173 Anaphase-promoting com 98.4 0.00096 2.1E-08 57.0 23.9 226 66-319 261-517 (611)
90 PF01535 PPR: PPR repeat; Int 98.3 8.2E-07 1.8E-11 45.3 3.6 31 169-199 1-31 (31)
91 TIGR03302 OM_YfiO outer membra 98.3 0.00036 7.9E-09 55.1 20.4 188 22-283 32-231 (235)
92 PF01535 PPR: PPR repeat; Int 98.3 9.3E-07 2E-11 45.0 3.4 30 293-322 2-31 (31)
93 KOG1070 rRNA processing protei 98.3 0.00057 1.2E-08 64.3 23.0 216 2-313 1472-1693(1710)
94 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 6.7E-05 1.4E-09 62.9 15.8 124 114-282 171-295 (395)
95 COG5010 TadD Flp pilus assembl 98.3 0.00023 4.9E-09 54.8 17.1 126 114-280 102-227 (257)
96 PRK10370 formate-dependent nit 98.3 0.00028 6E-09 53.9 17.8 144 174-320 22-173 (198)
97 KOG1128 Uncharacterized conser 98.3 0.00019 4.2E-09 62.9 18.1 27 24-50 399-425 (777)
98 cd05804 StaR_like StaR_like; a 98.2 0.0021 4.5E-08 54.2 30.1 252 23-319 6-292 (355)
99 PRK15179 Vi polysaccharide bio 98.2 0.00026 5.6E-09 64.2 19.3 146 109-297 83-228 (694)
100 PLN02789 farnesyltranstransfer 98.2 0.0021 4.6E-08 52.9 23.7 118 109-267 139-267 (320)
101 PRK15359 type III secretion sy 98.2 0.00033 7.2E-09 50.5 16.0 95 170-283 26-120 (144)
102 PF09976 TPR_21: Tetratricopep 98.2 0.00034 7.4E-09 50.5 16.2 130 169-317 13-144 (145)
103 KOG0495 HAT repeat protein [RN 98.2 0.0036 7.8E-08 54.7 27.6 288 2-320 493-846 (913)
104 PF10037 MRP-S27: Mitochondria 98.2 3.4E-05 7.4E-10 64.9 11.9 125 164-304 62-186 (429)
105 PF08579 RPM2: Mitochondrial r 98.2 5.4E-05 1.2E-09 50.3 10.2 81 222-303 27-116 (120)
106 KOG1174 Anaphase-promoting com 98.2 0.0028 6E-08 52.3 22.8 164 5-196 213-396 (564)
107 PRK15359 type III secretion sy 98.1 0.00035 7.5E-09 50.4 14.7 96 115-250 27-122 (144)
108 PF08579 RPM2: Mitochondrial r 98.1 5.2E-05 1.1E-09 50.4 9.3 87 172-267 29-116 (120)
109 COG5010 TadD Flp pilus assembl 98.1 0.00048 1E-08 53.1 15.3 158 116-316 70-227 (257)
110 PF10037 MRP-S27: Mitochondria 98.1 9.7E-05 2.1E-09 62.3 12.4 126 107-268 61-186 (429)
111 PRK15179 Vi polysaccharide bio 98.1 0.0011 2.4E-08 60.2 19.9 134 165-319 83-216 (694)
112 KOG1128 Uncharacterized conser 98.1 0.00081 1.8E-08 59.1 18.0 193 3-282 413-614 (777)
113 KOG4340 Uncharacterized conser 98.1 0.0018 3.9E-08 51.1 18.2 277 3-314 25-333 (459)
114 TIGR02552 LcrH_SycD type III s 98.1 0.00027 5.9E-09 50.3 13.2 107 167-295 16-122 (135)
115 PRK14720 transcript cleavage f 98.0 0.002 4.3E-08 59.5 20.6 229 21-302 29-268 (906)
116 TIGR02552 LcrH_SycD type III s 98.0 0.00025 5.4E-09 50.6 12.0 99 219-320 16-114 (135)
117 PF09976 TPR_21: Tetratricopep 98.0 0.00084 1.8E-08 48.5 14.6 132 113-281 13-144 (145)
118 PF06239 ECSIT: Evolutionarily 98.0 0.00015 3.3E-09 54.4 10.4 75 20-97 44-148 (228)
119 PF06239 ECSIT: Evolutionarily 98.0 0.00025 5.4E-09 53.3 11.4 113 167-282 46-166 (228)
120 KOG1125 TPR repeat-containing 98.0 0.0085 1.8E-07 51.6 21.8 182 112-313 353-564 (579)
121 KOG1914 mRNA cleavage and poly 98.0 0.0094 2E-07 51.0 27.0 102 221-325 367-469 (656)
122 KOG3081 Vesicle coat complex C 97.9 0.0051 1.1E-07 47.8 22.3 156 114-319 110-270 (299)
123 KOG3081 Vesicle coat complex C 97.9 0.0052 1.1E-07 47.8 18.9 120 120-282 145-269 (299)
124 COG4783 Putative Zn-dependent 97.9 0.0018 3.9E-08 54.4 17.1 118 122-281 316-434 (484)
125 PLN02789 farnesyltranstransfer 97.9 0.0084 1.8E-07 49.4 24.5 220 25-318 39-300 (320)
126 KOG2047 mRNA splicing factor [ 97.9 0.013 2.9E-07 51.3 27.8 209 111-322 168-508 (835)
127 PF05843 Suf: Suppressor of fo 97.9 0.0006 1.3E-08 55.2 13.7 133 169-320 2-136 (280)
128 PF05843 Suf: Suppressor of fo 97.9 0.0008 1.7E-08 54.4 14.4 131 113-283 2-135 (280)
129 KOG3060 Uncharacterized conser 97.9 0.0055 1.2E-07 47.3 17.4 155 124-319 24-182 (289)
130 KOG0985 Vesicle coat protein c 97.9 0.022 4.7E-07 52.7 23.8 163 8-205 967-1170(1666)
131 COG4783 Putative Zn-dependent 97.9 0.013 2.8E-07 49.6 24.6 121 176-318 314-435 (484)
132 KOG1156 N-terminal acetyltrans 97.8 0.018 3.9E-07 50.4 26.7 134 165-318 366-509 (700)
133 cd00189 TPR Tetratricopeptide 97.8 0.00062 1.3E-08 44.5 10.9 95 223-320 3-97 (100)
134 KOG4162 Predicted calmodulin-b 97.8 0.021 4.6E-07 51.0 22.8 247 36-287 240-545 (799)
135 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0011 2.4E-08 45.8 12.3 100 221-320 3-105 (119)
136 PRK04841 transcriptional regul 97.8 0.032 7E-07 53.5 25.6 178 115-320 576-760 (903)
137 cd00189 TPR Tetratricopeptide 97.8 0.00077 1.7E-08 44.1 10.9 93 171-282 3-95 (100)
138 KOG4162 Predicted calmodulin-b 97.8 0.026 5.6E-07 50.5 26.9 128 171-319 653-782 (799)
139 PRK14720 transcript cleavage f 97.7 0.0052 1.1E-07 57.0 17.8 147 111-282 30-176 (906)
140 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0034 7.4E-08 43.3 13.3 100 170-284 4-105 (119)
141 PF14559 TPR_19: Tetratricopep 97.7 0.00013 2.7E-09 45.0 5.2 59 1-62 4-62 (68)
142 PF12921 ATP13: Mitochondrial 97.7 0.0013 2.8E-08 45.9 10.3 84 219-302 1-99 (126)
143 PF12921 ATP13: Mitochondrial 97.6 0.00072 1.6E-08 47.1 9.1 100 167-268 1-101 (126)
144 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.7E-09 46.6 5.5 81 233-316 2-83 (84)
145 KOG3616 Selective LIM binding 97.6 0.0029 6.3E-08 56.1 13.4 24 29-52 738-761 (1636)
146 PF12895 Apc3: Anaphase-promot 97.5 0.00036 7.8E-09 45.1 6.1 82 181-280 2-83 (84)
147 PLN03088 SGT1, suppressor of 97.5 0.0039 8.5E-08 52.4 13.3 103 175-299 9-111 (356)
148 KOG3616 Selective LIM binding 97.5 0.046 9.9E-07 49.0 19.2 105 178-313 742-846 (1636)
149 KOG0985 Vesicle coat protein c 97.4 0.11 2.4E-06 48.4 22.6 149 33-194 1058-1220(1666)
150 PLN03088 SGT1, suppressor of 97.4 0.0064 1.4E-07 51.1 13.5 92 119-250 9-100 (356)
151 PRK02603 photosystem I assembl 97.4 0.014 3.1E-07 43.5 14.1 88 167-270 34-121 (172)
152 KOG3617 WD40 and TPR repeat-co 97.4 0.045 9.8E-07 49.6 18.5 229 2-317 742-993 (1416)
153 PRK02603 photosystem I assembl 97.4 0.015 3.3E-07 43.3 14.1 93 111-240 34-126 (172)
154 PF14559 TPR_19: Tetratricopep 97.4 0.0014 3.1E-08 40.2 7.1 49 233-282 4-52 (68)
155 PF13432 TPR_16: Tetratricopep 97.4 0.00075 1.6E-08 41.0 5.6 51 1-52 10-60 (65)
156 CHL00033 ycf3 photosystem I as 97.3 0.011 2.4E-07 43.8 12.7 67 112-197 35-101 (168)
157 PF14938 SNAP: Soluble NSF att 97.3 0.061 1.3E-06 43.7 19.7 220 24-282 36-264 (282)
158 KOG2376 Signal recognition par 97.3 0.1 2.2E-06 45.5 27.3 181 1-198 25-254 (652)
159 PRK15363 pathogenicity island 97.3 0.012 2.5E-07 42.4 11.4 96 221-319 36-131 (157)
160 PRK10153 DNA-binding transcrip 97.3 0.046 1E-06 48.3 17.5 144 107-293 332-488 (517)
161 CHL00033 ycf3 photosystem I as 97.2 0.026 5.6E-07 41.9 13.7 97 168-280 35-138 (168)
162 KOG3060 Uncharacterized conser 97.2 0.066 1.4E-06 41.6 21.2 119 123-282 97-218 (289)
163 KOG4340 Uncharacterized conser 97.2 0.039 8.4E-07 43.9 14.5 57 265-323 154-210 (459)
164 KOG1174 Anaphase-promoting com 97.2 0.1 2.3E-06 43.5 23.3 84 230-316 310-393 (564)
165 KOG1914 mRNA cleavage and poly 97.1 0.14 3.1E-06 44.2 21.7 156 113-307 367-526 (656)
166 KOG2053 Mitochondrial inherita 97.1 0.21 4.5E-06 45.8 22.8 56 111-189 76-131 (932)
167 PRK15363 pathogenicity island 97.1 0.054 1.2E-06 39.0 15.9 93 174-285 41-133 (157)
168 PF03704 BTAD: Bacterial trans 97.1 0.0032 7E-08 45.5 7.6 72 222-294 64-139 (146)
169 COG4235 Cytochrome c biogenesi 97.1 0.09 2E-06 41.9 15.8 157 119-300 109-269 (287)
170 KOG2376 Signal recognition par 97.1 0.18 4E-06 44.0 25.8 272 1-317 188-517 (652)
171 KOG3617 WD40 and TPR repeat-co 97.1 0.11 2.5E-06 47.2 17.5 29 167-195 966-994 (1416)
172 PF04840 Vps16_C: Vps16, C-ter 97.0 0.15 3.2E-06 42.1 21.8 106 170-313 179-284 (319)
173 PF14938 SNAP: Soluble NSF att 97.0 0.035 7.6E-07 45.1 13.4 97 224-320 118-225 (282)
174 PF12688 TPR_5: Tetratrico pep 97.0 0.047 1E-06 37.7 11.9 93 226-318 7-102 (120)
175 PF13432 TPR_16: Tetratricopep 97.0 0.005 1.1E-07 37.3 6.5 55 227-282 4-58 (65)
176 PF03704 BTAD: Bacterial trans 96.9 0.0093 2E-07 43.1 8.7 73 169-259 63-140 (146)
177 KOG3941 Intermediate in Toll s 96.9 0.052 1.1E-06 42.8 12.6 113 167-282 66-186 (406)
178 PRK10153 DNA-binding transcrip 96.9 0.12 2.7E-06 45.7 16.5 138 162-320 331-482 (517)
179 PF12688 TPR_5: Tetratrico pep 96.9 0.08 1.7E-06 36.6 13.7 24 121-144 10-33 (120)
180 PF04840 Vps16_C: Vps16, C-ter 96.8 0.21 4.6E-06 41.2 21.5 86 221-317 178-263 (319)
181 PRK04841 transcriptional regul 96.8 0.51 1.1E-05 45.5 28.8 178 114-319 533-719 (903)
182 PRK10803 tol-pal system protei 96.8 0.053 1.1E-06 43.4 12.6 100 221-320 144-246 (263)
183 PF13414 TPR_11: TPR repeat; P 96.8 0.014 2.9E-07 35.9 7.5 65 111-197 2-67 (69)
184 KOG0548 Molecular co-chaperone 96.7 0.32 7E-06 42.0 24.5 200 115-320 227-455 (539)
185 KOG0624 dsRNA-activated protei 96.7 0.25 5.5E-06 40.3 22.5 178 109-319 186-369 (504)
186 PF13414 TPR_11: TPR repeat; P 96.7 0.013 2.8E-07 36.0 6.9 62 220-282 3-65 (69)
187 PRK10866 outer membrane biogen 96.7 0.23 4.9E-06 39.4 21.3 186 111-319 31-240 (243)
188 COG4235 Cytochrome c biogenesi 96.7 0.24 5.2E-06 39.6 15.3 140 175-320 109-256 (287)
189 PRK10803 tol-pal system protei 96.6 0.081 1.8E-06 42.3 12.5 102 168-284 143-246 (263)
190 KOG2280 Vacuolar assembly/sort 96.6 0.51 1.1E-05 42.6 18.1 109 170-315 686-794 (829)
191 PF13371 TPR_9: Tetratricopept 96.6 0.014 2.9E-07 36.3 6.6 56 227-283 2-57 (73)
192 PF13371 TPR_9: Tetratricopept 96.6 0.018 3.8E-07 35.8 6.9 51 1-52 8-58 (73)
193 KOG3941 Intermediate in Toll s 96.5 0.028 6.2E-07 44.2 8.9 80 20-102 64-173 (406)
194 KOG1127 TPR repeat-containing 96.4 0.89 1.9E-05 42.7 19.7 163 113-318 493-657 (1238)
195 KOG0553 TPR repeat-containing 96.3 0.11 2.4E-06 41.4 11.3 88 228-319 89-177 (304)
196 KOG1127 TPR repeat-containing 96.3 0.98 2.1E-05 42.4 19.0 50 2-52 576-625 (1238)
197 PF13424 TPR_12: Tetratricopep 96.3 0.022 4.8E-07 35.9 6.3 68 112-196 5-74 (78)
198 PF13424 TPR_12: Tetratricopep 96.3 0.029 6.3E-07 35.4 6.7 66 168-247 5-73 (78)
199 COG1729 Uncharacterized protei 96.3 0.1 2.2E-06 41.1 10.7 98 222-320 144-244 (262)
200 KOG1538 Uncharacterized conser 96.2 0.16 3.4E-06 45.0 12.5 23 297-319 823-845 (1081)
201 PRK10866 outer membrane biogen 96.0 0.57 1.2E-05 37.1 20.8 145 117-282 74-239 (243)
202 PF13525 YfiO: Outer membrane 96.0 0.53 1.2E-05 36.1 15.7 174 115-311 8-198 (203)
203 PF13170 DUF4003: Protein of u 95.9 0.3 6.5E-06 39.9 12.2 125 39-209 78-223 (297)
204 KOG2796 Uncharacterized conser 95.8 0.24 5.2E-06 38.9 10.7 118 3-151 192-323 (366)
205 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.28 6E-06 41.9 11.9 65 217-283 72-140 (453)
206 PF10300 DUF3808: Protein of u 95.8 1.2 2.7E-05 39.1 18.6 169 115-319 191-375 (468)
207 COG3629 DnrI DNA-binding trans 95.7 0.2 4.4E-06 40.0 10.3 81 220-301 153-237 (280)
208 PRK15331 chaperone protein Sic 95.6 0.28 6.1E-06 35.7 9.7 90 227-319 44-133 (165)
209 PF07035 Mic1: Colon cancer-as 95.5 0.64 1.4E-05 34.2 14.6 137 8-198 14-150 (167)
210 PF04053 Coatomer_WDAD: Coatom 95.5 0.25 5.4E-06 42.8 11.1 82 219-316 346-427 (443)
211 KOG2053 Mitochondrial inherita 95.5 2.2 4.7E-05 39.7 28.3 62 259-322 440-504 (932)
212 PF04053 Coatomer_WDAD: Coatom 95.4 0.34 7.4E-06 42.0 11.6 135 119-320 268-402 (443)
213 PF09205 DUF1955: Domain of un 95.4 0.57 1.2E-05 32.7 13.1 68 254-323 85-152 (161)
214 KOG2041 WD40 repeat protein [G 95.4 1.4 3E-05 39.9 14.8 57 216-281 848-904 (1189)
215 COG5107 RNA14 Pre-mRNA 3'-end 95.3 1.3 2.7E-05 37.9 13.8 146 113-301 398-545 (660)
216 KOG0553 TPR repeat-containing 95.3 1.2 2.7E-05 35.7 18.2 100 121-262 90-189 (304)
217 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 1.8 3.9E-05 37.2 15.4 65 166-249 73-141 (453)
218 KOG2796 Uncharacterized conser 95.0 1.4 2.9E-05 34.9 13.9 30 167-196 211-240 (366)
219 PF08631 SPO22: Meiosis protei 95.0 1.5 3.4E-05 35.5 18.6 177 122-324 3-190 (278)
220 PF04184 ST7: ST7 protein; In 95.0 1.7 3.7E-05 37.7 13.9 125 180-306 212-346 (539)
221 cd00923 Cyt_c_Oxidase_Va Cytoc 94.7 0.64 1.4E-05 30.3 8.3 67 7-74 26-92 (103)
222 PRK15331 chaperone protein Sic 94.7 0.5 1.1E-05 34.5 8.8 88 177-283 46-133 (165)
223 COG4700 Uncharacterized protei 94.7 1.3 2.8E-05 33.0 14.8 61 222-282 91-151 (251)
224 COG3629 DnrI DNA-binding trans 94.7 0.65 1.4E-05 37.3 10.3 79 168-264 153-236 (280)
225 PF13525 YfiO: Outer membrane 94.6 1.5 3.3E-05 33.6 20.5 178 1-240 18-198 (203)
226 COG4700 Uncharacterized protei 94.4 1.5 3.3E-05 32.7 14.4 128 165-312 86-214 (251)
227 PF10602 RPN7: 26S proteasome 94.4 1.6 3.4E-05 32.7 11.4 100 168-284 36-142 (177)
228 KOG0543 FKBP-type peptidyl-pro 94.4 2.7 5.9E-05 35.3 13.4 134 176-319 216-354 (397)
229 KOG0624 dsRNA-activated protei 94.3 2.5 5.5E-05 34.8 22.2 246 22-320 37-298 (504)
230 PF02284 COX5A: Cytochrome c o 94.3 0.85 1.8E-05 30.1 8.3 67 8-75 30-96 (108)
231 KOG2041 WD40 repeat protein [G 94.1 4.4 9.5E-05 36.9 17.0 43 260-302 1026-1068(1189)
232 smart00299 CLH Clathrin heavy 94.1 1.5 3.2E-05 31.3 16.0 128 114-303 9-137 (140)
233 PF13428 TPR_14: Tetratricopep 94.1 0.29 6.4E-06 26.7 5.4 29 222-250 3-31 (44)
234 PF02284 COX5A: Cytochrome c o 93.7 1.3 2.8E-05 29.3 9.5 72 227-300 15-88 (108)
235 PF13428 TPR_14: Tetratricopep 93.6 0.39 8.4E-06 26.2 5.2 28 170-197 3-30 (44)
236 PF13281 DUF4071: Domain of un 93.5 4.2 9E-05 34.4 15.9 134 3-141 156-334 (374)
237 smart00299 CLH Clathrin heavy 93.5 2 4.3E-05 30.6 13.4 88 170-282 9-96 (140)
238 PF13176 TPR_7: Tetratricopept 93.4 0.25 5.5E-06 25.6 4.1 26 25-50 1-26 (36)
239 KOG0543 FKBP-type peptidyl-pro 93.2 4.7 0.0001 34.0 14.7 136 120-283 216-354 (397)
240 PF10602 RPN7: 26S proteasome 93.1 2.4 5.1E-05 31.8 10.4 97 221-317 37-139 (177)
241 PF13170 DUF4003: Protein of u 93.1 4.3 9.3E-05 33.3 19.2 151 103-288 88-254 (297)
242 PF13176 TPR_7: Tetratricopept 93.0 0.3 6.5E-06 25.3 4.0 26 170-195 1-26 (36)
243 cd00923 Cyt_c_Oxidase_Va Cytoc 93.0 1.1 2.5E-05 29.2 7.2 64 235-300 22-85 (103)
244 PF13281 DUF4071: Domain of un 92.9 5.2 0.00011 33.8 18.3 176 116-321 145-335 (374)
245 KOG1538 Uncharacterized conser 92.9 7.1 0.00015 35.3 14.4 103 20-137 553-657 (1081)
246 KOG4570 Uncharacterized conser 92.8 1 2.2E-05 36.4 8.2 105 162-282 58-162 (418)
247 COG3118 Thioredoxin domain-con 92.4 4.9 0.00011 32.5 12.8 121 177-319 143-264 (304)
248 KOG4570 Uncharacterized conser 92.3 1.3 2.8E-05 35.9 8.3 98 220-320 64-164 (418)
249 PF10300 DUF3808: Protein of u 92.3 7.7 0.00017 34.3 19.6 131 114-282 231-374 (468)
250 PF07079 DUF1347: Protein of u 91.9 7.7 0.00017 33.5 24.9 49 266-317 473-521 (549)
251 PF13929 mRNA_stabil: mRNA sta 91.2 7 0.00015 31.6 13.7 97 219-315 163-262 (292)
252 KOG0548 Molecular co-chaperone 91.2 10 0.00022 33.4 22.8 231 26-303 227-471 (539)
253 KOG4555 TPR repeat-containing 91.1 3.9 8.5E-05 28.6 10.0 94 227-321 50-145 (175)
254 KOG4555 TPR repeat-containing 91.1 3.9 8.5E-05 28.6 11.2 88 177-282 52-142 (175)
255 COG1747 Uncharacterized N-term 90.7 11 0.00024 33.1 16.9 168 106-318 60-232 (711)
256 PF13512 TPR_18: Tetratricopep 90.6 4.8 0.0001 28.7 12.1 75 227-302 17-93 (142)
257 PF13431 TPR_17: Tetratricopep 90.5 0.39 8.4E-06 24.6 2.6 32 11-43 2-33 (34)
258 PF07035 Mic1: Colon cancer-as 90.3 5.8 0.00013 29.3 13.5 124 105-282 22-147 (167)
259 KOG2280 Vacuolar assembly/sort 90.3 15 0.00032 33.9 20.4 27 111-137 506-532 (829)
260 PF13374 TPR_10: Tetratricopep 90.0 0.83 1.8E-05 24.2 4.0 30 112-141 2-31 (42)
261 COG5107 RNA14 Pre-mRNA 3'-end 89.8 12 0.00027 32.3 26.9 92 220-315 397-490 (660)
262 KOG1130 Predicted G-alpha GTPa 89.8 12 0.00026 32.0 15.6 134 170-319 197-343 (639)
263 PF07719 TPR_2: Tetratricopept 89.7 1.3 2.8E-05 22.1 4.4 29 24-52 2-30 (34)
264 PF00515 TPR_1: Tetratricopept 89.6 1.4 3E-05 22.2 4.4 29 24-52 2-30 (34)
265 COG4649 Uncharacterized protei 89.5 7 0.00015 29.0 14.3 139 167-323 58-199 (221)
266 PF00637 Clathrin: Region in C 89.5 0.13 2.7E-06 37.0 0.4 83 227-317 14-96 (143)
267 PF13374 TPR_10: Tetratricopep 89.4 1.1 2.5E-05 23.6 4.2 30 168-197 2-31 (42)
268 KOG1585 Protein required for f 89.3 9.2 0.0002 30.1 17.8 54 23-77 31-86 (308)
269 PF00637 Clathrin: Region in C 89.1 0.1 2.3E-06 37.4 -0.3 129 117-306 12-140 (143)
270 PF09613 HrpB1_HrpK: Bacterial 88.2 8.2 0.00018 28.2 11.1 53 229-283 19-72 (160)
271 PF09205 DUF1955: Domain of un 88.2 7.1 0.00015 27.5 13.0 129 35-199 14-151 (161)
272 COG4455 ImpE Protein of avirul 88.2 5.8 0.00013 30.6 8.2 52 227-279 8-59 (273)
273 TIGR03504 FimV_Cterm FimV C-te 88.1 1.1 2.4E-05 24.6 3.4 25 297-321 5-29 (44)
274 COG1729 Uncharacterized protei 87.9 12 0.00027 29.8 12.7 101 114-249 144-244 (262)
275 KOG1920 IkappaB kinase complex 87.6 30 0.00065 33.9 19.4 31 20-51 788-820 (1265)
276 COG4649 Uncharacterized protei 87.0 11 0.00023 28.1 16.0 144 110-288 57-200 (221)
277 PF13929 mRNA_stabil: mRNA sta 86.6 16 0.00034 29.7 16.8 89 215-303 197-290 (292)
278 PF04184 ST7: ST7 protein; In 86.4 22 0.00048 31.2 21.2 58 174-247 265-322 (539)
279 COG4105 ComL DNA uptake lipopr 85.9 16 0.00034 29.0 21.6 170 113-319 36-232 (254)
280 TIGR03504 FimV_Cterm FimV C-te 85.8 2.8 6.1E-05 23.0 4.2 25 226-250 5-29 (44)
281 KOG0276 Vesicle coat complex C 85.7 17 0.00038 32.6 10.8 82 167-280 665-746 (794)
282 COG3118 Thioredoxin domain-con 85.7 18 0.00038 29.4 15.3 147 121-310 143-291 (304)
283 PF13174 TPR_6: Tetratricopept 85.6 2.2 4.8E-05 21.0 3.7 27 26-52 3-29 (33)
284 PF00515 TPR_1: Tetratricopept 85.6 3 6.5E-05 20.8 4.2 29 169-197 2-30 (34)
285 PF11846 DUF3366: Domain of un 85.4 4.6 0.0001 30.7 6.8 32 251-282 140-171 (193)
286 PRK11906 transcriptional regul 85.0 25 0.00055 30.6 15.4 95 217-314 335-430 (458)
287 PF07721 TPR_4: Tetratricopept 84.7 1.9 4.1E-05 20.3 2.9 23 25-47 3-25 (26)
288 KOG4077 Cytochrome c oxidase, 84.5 11 0.00024 26.2 7.9 67 8-75 69-135 (149)
289 PF13181 TPR_8: Tetratricopept 84.2 3.7 8.1E-05 20.4 4.2 29 24-52 2-30 (34)
290 TIGR02508 type_III_yscG type I 84.1 9.9 0.00021 25.2 7.6 79 235-321 20-98 (115)
291 PF07163 Pex26: Pex26 protein; 84.0 21 0.00045 28.8 9.8 87 227-314 90-181 (309)
292 PF07079 DUF1347: Protein of u 83.9 28 0.00061 30.3 21.0 193 114-318 79-325 (549)
293 KOG2114 Vacuolar assembly/sort 83.7 39 0.00085 31.8 12.4 64 111-196 333-396 (933)
294 KOG4077 Cytochrome c oxidase, 83.6 8.3 0.00018 26.8 6.4 60 238-299 67-126 (149)
295 PF10579 Rapsyn_N: Rapsyn N-te 83.5 4.1 8.9E-05 25.6 4.6 47 267-313 18-65 (80)
296 COG3898 Uncharacterized membra 83.4 27 0.00059 29.7 20.7 48 1-49 133-180 (531)
297 KOG0550 Molecular chaperone (D 83.4 28 0.0006 29.9 12.8 130 180-320 215-350 (486)
298 PF08631 SPO22: Meiosis protei 83.4 23 0.00049 28.8 26.8 165 113-318 85-273 (278)
299 KOG0276 Vesicle coat complex C 83.2 26 0.00056 31.6 10.8 132 113-316 615-746 (794)
300 PF11207 DUF2989: Protein of u 83.1 18 0.00038 27.6 8.7 76 235-311 121-198 (203)
301 PF07719 TPR_2: Tetratricopept 83.0 3.8 8.3E-05 20.3 4.0 29 113-141 2-30 (34)
302 PF04097 Nic96: Nup93/Nic96; 83.0 39 0.00085 31.2 19.5 195 119-317 265-531 (613)
303 PF11848 DUF3368: Domain of un 82.2 6.6 0.00014 21.9 4.9 37 175-211 9-45 (48)
304 PF10366 Vps39_1: Vacuolar sor 81.2 14 0.00031 25.0 7.3 29 168-196 39-67 (108)
305 KOG2610 Uncharacterized conser 80.3 33 0.00072 28.6 11.3 87 230-317 185-273 (491)
306 PF13181 TPR_8: Tetratricopept 80.1 5.7 0.00012 19.7 4.2 27 222-248 3-29 (34)
307 KOG0991 Replication factor C, 79.8 28 0.0006 27.4 9.5 73 230-305 202-286 (333)
308 PF11848 DUF3368: Domain of un 79.7 8.6 0.00019 21.5 5.0 33 231-263 13-45 (48)
309 COG4105 ComL DNA uptake lipopr 79.5 30 0.00064 27.6 19.9 61 174-249 173-233 (254)
310 PRK10564 maltose regulon perip 79.4 3.2 7E-05 33.6 4.0 44 108-151 252-296 (303)
311 PF14689 SPOB_a: Sensor_kinase 78.4 4.5 9.8E-05 24.1 3.6 28 291-318 23-50 (62)
312 PF10579 Rapsyn_N: Rapsyn N-te 77.8 10 0.00022 23.8 5.0 51 227-278 14-66 (80)
313 PF09613 HrpB1_HrpK: Bacterial 77.4 26 0.00055 25.7 12.6 72 176-267 18-89 (160)
314 TIGR02561 HrpB1_HrpK type III 77.1 25 0.00054 25.4 11.1 86 231-318 21-120 (153)
315 COG3898 Uncharacterized membra 76.8 47 0.001 28.4 27.0 187 112-324 188-396 (531)
316 PF06552 TOM20_plant: Plant sp 76.3 19 0.0004 27.0 6.8 72 4-79 51-137 (186)
317 PF09477 Type_III_YscG: Bacter 75.8 21 0.00047 24.0 8.0 81 233-321 19-99 (116)
318 PF11207 DUF2989: Protein of u 75.4 34 0.00074 26.2 9.0 75 183-275 121-198 (203)
319 PF12926 MOZART2: Mitotic-spin 75.4 18 0.00039 23.2 5.6 22 44-65 29-50 (88)
320 TIGR02508 type_III_yscG type I 74.8 22 0.00048 23.7 6.3 71 4-79 21-98 (115)
321 KOG1920 IkappaB kinase complex 74.4 52 0.0011 32.4 10.6 49 259-316 1003-1051(1265)
322 PRK10564 maltose regulon perip 74.2 8.1 0.00017 31.4 4.9 43 218-260 254-297 (303)
323 cd00280 TRFH Telomeric Repeat 74.2 33 0.00071 25.8 7.6 66 236-305 85-157 (200)
324 COG5108 RPO41 Mitochondrial DN 73.4 32 0.00069 31.6 8.6 75 225-303 33-115 (1117)
325 COG4455 ImpE Protein of avirul 73.3 42 0.00091 26.2 10.8 76 114-211 3-80 (273)
326 PF13512 TPR_18: Tetratricopep 73.2 31 0.00068 24.7 12.7 80 176-270 18-97 (142)
327 PF11846 DUF3366: Domain of un 71.8 12 0.00027 28.4 5.4 42 9-52 132-173 (193)
328 PF14689 SPOB_a: Sensor_kinase 71.8 11 0.00024 22.4 4.1 46 4-51 6-51 (62)
329 PF13762 MNE1: Mitochondrial s 71.8 35 0.00075 24.6 10.5 87 169-267 40-127 (145)
330 KOG2610 Uncharacterized conser 71.5 60 0.0013 27.2 13.5 87 178-282 185-274 (491)
331 PF09986 DUF2225: Uncharacteri 71.5 35 0.00076 26.5 7.8 68 4-74 141-213 (214)
332 PF11663 Toxin_YhaV: Toxin wit 70.7 5.4 0.00012 28.0 2.8 26 122-147 105-130 (140)
333 PRK12356 glutaminase; Reviewed 70.5 59 0.0013 27.0 9.0 69 83-151 94-162 (319)
334 COG0735 Fur Fe2+/Zn2+ uptake r 70.0 36 0.00079 24.5 7.1 65 189-271 7-71 (145)
335 PF11817 Foie-gras_1: Foie gra 69.6 29 0.00064 27.6 7.3 63 256-318 179-245 (247)
336 smart00386 HAT HAT (Half-A-TPR 69.5 9.5 0.00021 18.4 3.1 29 2-31 1-29 (33)
337 KOG2908 26S proteasome regulat 69.3 67 0.0014 26.9 11.2 88 222-309 77-175 (380)
338 PF13762 MNE1: Mitochondrial s 68.7 41 0.00089 24.2 11.5 88 222-310 41-134 (145)
339 smart00028 TPR Tetratricopepti 68.1 11 0.00024 17.4 3.4 28 24-51 2-29 (34)
340 KOG3807 Predicted membrane pro 68.1 70 0.0015 26.7 12.2 57 226-282 281-338 (556)
341 COG5159 RPN6 26S proteasome re 66.7 70 0.0015 26.1 11.4 134 174-317 9-151 (421)
342 TIGR02561 HrpB1_HrpK type III 65.4 49 0.0011 23.9 11.2 55 122-198 20-74 (153)
343 KOG1586 Protein required for f 65.0 68 0.0015 25.4 14.0 49 89-137 49-98 (288)
344 PHA02875 ankyrin repeat protei 64.5 95 0.0021 26.9 11.3 85 227-325 139-229 (413)
345 PF04910 Tcf25: Transcriptiona 63.6 94 0.002 26.5 16.1 147 126-282 8-166 (360)
346 COG4785 NlpI Lipoprotein NlpI, 63.3 71 0.0015 25.0 8.5 34 20-53 95-129 (297)
347 KOG4648 Uncharacterized conser 62.8 40 0.00088 28.2 6.7 79 227-316 104-183 (536)
348 KOG3364 Membrane protein invol 62.7 33 0.00072 24.3 5.4 55 3-59 50-105 (149)
349 PF02259 FAT: FAT domain; Int 61.8 95 0.0021 26.0 20.9 69 166-248 144-212 (352)
350 KOG2114 Vacuolar assembly/sort 61.6 1.5E+02 0.0033 28.3 19.5 53 259-316 709-761 (933)
351 COG5108 RPO41 Mitochondrial DN 60.4 84 0.0018 29.1 8.7 76 173-266 33-114 (1117)
352 PF10345 Cohesin_load: Cohesin 60.4 1.4E+02 0.0031 27.6 16.0 63 1-63 374-452 (608)
353 TIGR03814 Gln_ase glutaminase 60.3 96 0.0021 25.6 8.8 25 127-151 126-151 (300)
354 COG5159 RPN6 26S proteasome re 59.9 96 0.0021 25.4 12.9 127 117-257 8-166 (421)
355 PRK05414 urocanate hydratase; 59.8 59 0.0013 28.8 7.5 51 125-209 216-266 (556)
356 PF11123 DNA_Packaging_2: DNA 59.5 25 0.00054 21.7 3.8 33 4-37 13-45 (82)
357 KOG4567 GTPase-activating prot 59.5 76 0.0016 26.2 7.5 71 240-316 263-343 (370)
358 PLN03025 replication factor C 59.3 1E+02 0.0023 25.6 10.4 75 213-291 173-259 (319)
359 PRK09857 putative transposase; 59.2 68 0.0015 26.4 7.6 65 258-324 209-273 (292)
360 PF14853 Fis1_TPR_C: Fis1 C-te 58.7 33 0.00071 19.7 4.6 36 27-64 5-40 (53)
361 PF02847 MA3: MA3 domain; Int 58.0 55 0.0012 22.0 7.1 98 224-324 6-113 (113)
362 KOG0550 Molecular chaperone (D 57.5 1.3E+02 0.0028 26.1 19.2 172 21-249 166-350 (486)
363 PRK12357 glutaminase; Reviewed 57.4 1.1E+02 0.0025 25.5 9.4 69 83-151 98-167 (326)
364 PF11663 Toxin_YhaV: Toxin wit 56.9 8.4 0.00018 27.1 1.8 21 305-325 109-129 (140)
365 PF03745 DUF309: Domain of unk 56.7 40 0.00088 20.1 6.1 48 230-277 9-61 (62)
366 PF12862 Apc5: Anaphase-promot 55.7 55 0.0012 21.3 6.3 65 230-294 8-80 (94)
367 PF07163 Pex26: Pex26 protein; 55.0 1.2E+02 0.0025 24.8 9.8 89 173-278 88-181 (309)
368 COG3947 Response regulator con 55.0 1.2E+02 0.0026 25.0 17.4 55 226-281 285-339 (361)
369 PRK00971 glutaminase; Provisio 54.9 1.2E+02 0.0026 25.1 8.2 68 83-150 89-157 (307)
370 KOG4567 GTPase-activating prot 54.8 1.2E+02 0.0027 25.1 9.3 71 188-280 263-343 (370)
371 KOG2063 Vacuolar assembly/sort 54.5 2.1E+02 0.0046 27.8 18.2 122 24-159 505-638 (877)
372 PRK14951 DNA polymerase III su 53.5 1.9E+02 0.0041 26.9 10.6 30 294-324 254-283 (618)
373 PRK11906 transcriptional regul 53.0 1.6E+02 0.0035 25.9 16.3 115 125-280 317-432 (458)
374 PF10475 DUF2450: Protein of u 52.7 1.3E+02 0.0028 24.7 9.9 54 117-197 103-156 (291)
375 KOG1550 Extracellular protein 51.6 1.9E+02 0.0042 26.4 15.2 154 122-321 259-427 (552)
376 cd00280 TRFH Telomeric Repeat 51.6 1E+02 0.0023 23.3 13.0 53 66-141 86-140 (200)
377 PF04124 Dor1: Dor1-like famil 51.4 51 0.0011 27.7 6.0 50 27-76 110-160 (338)
378 PF08424 NRDE-2: NRDE-2, neces 51.1 1.5E+02 0.0032 24.8 15.2 105 217-322 62-185 (321)
379 cd07153 Fur_like Ferric uptake 50.2 51 0.0011 22.4 4.9 48 226-273 6-53 (116)
380 COG4003 Uncharacterized protei 50.2 63 0.0014 20.5 4.6 26 28-53 36-61 (98)
381 PRK08691 DNA polymerase III su 50.0 2.3E+02 0.005 26.8 10.3 74 247-324 192-278 (709)
382 COG0457 NrfG FOG: TPR repeat [ 49.9 1.1E+02 0.0023 22.9 19.5 169 111-319 94-264 (291)
383 COG4003 Uncharacterized protei 48.7 36 0.00078 21.5 3.4 25 297-321 37-61 (98)
384 cd08790 DED_DEDD Death Effecto 48.4 43 0.00092 22.1 3.8 21 34-54 35-55 (97)
385 PF09454 Vps23_core: Vps23 cor 48.4 60 0.0013 19.6 4.7 50 217-267 5-54 (65)
386 PF01475 FUR: Ferric uptake re 48.2 45 0.00097 22.9 4.4 49 224-272 11-59 (120)
387 PF08424 NRDE-2: NRDE-2, neces 48.0 1.6E+02 0.0036 24.5 14.5 59 5-65 48-106 (321)
388 TIGR03814 Gln_ase glutaminase 47.8 1.6E+02 0.0035 24.3 8.7 62 197-258 80-150 (300)
389 KOG1941 Acetylcholine receptor 47.7 1.8E+02 0.0039 24.9 9.6 139 116-282 126-273 (518)
390 KOG0292 Vesicle coat complex C 47.6 25 0.00053 33.3 3.6 45 230-280 653-697 (1202)
391 COG5210 GTPase-activating prot 47.1 2E+02 0.0044 25.8 9.3 25 227-251 384-408 (496)
392 PF10366 Vps39_1: Vacuolar sor 47.1 88 0.0019 21.2 7.4 26 223-248 42-67 (108)
393 PF02259 FAT: FAT domain; Int 47.0 1.7E+02 0.0037 24.4 18.1 65 254-319 145-212 (352)
394 smart00777 Mad3_BUB1_I Mad3/BU 47.0 76 0.0016 22.2 5.2 42 6-47 81-123 (125)
395 KOG1147 Glutamyl-tRNA syntheta 47.0 58 0.0013 29.1 5.5 22 227-248 310-331 (712)
396 PF09868 DUF2095: Uncharacteri 46.3 94 0.002 21.2 5.5 36 227-263 68-103 (128)
397 PRK10941 hypothetical protein; 46.3 1.6E+02 0.0035 23.9 10.5 81 222-303 183-263 (269)
398 KOG1130 Predicted G-alpha GTPa 46.0 65 0.0014 27.8 5.5 246 1-281 30-341 (639)
399 PRK15180 Vi polysaccharide bio 46.0 2.2E+02 0.0047 25.4 10.9 31 222-252 359-389 (831)
400 PRK14963 DNA polymerase III su 46.0 2.3E+02 0.005 25.6 10.2 74 247-324 189-274 (504)
401 PRK12357 glutaminase; Reviewed 45.8 1.8E+02 0.0039 24.4 9.5 63 197-259 96-167 (326)
402 KOG2066 Vacuolar assembly/sort 45.8 2.7E+02 0.0059 26.5 22.0 81 110-196 453-533 (846)
403 PF12862 Apc5: Anaphase-promot 45.4 84 0.0018 20.4 6.6 23 297-319 47-69 (94)
404 KOG1585 Protein required for f 45.1 1.6E+02 0.0035 23.6 13.5 97 170-279 152-251 (308)
405 COG2976 Uncharacterized protei 45.1 1.4E+02 0.003 22.9 15.5 94 225-321 94-189 (207)
406 COG0735 Fur Fe2+/Zn2+ uptake r 44.6 1.2E+02 0.0025 21.9 6.7 64 241-306 7-70 (145)
407 KOG2034 Vacuolar sorting prote 44.6 3E+02 0.0065 26.6 22.7 144 170-319 532-695 (911)
408 KOG0989 Replication factor C, 44.2 1.9E+02 0.0041 24.1 9.4 78 244-324 199-288 (346)
409 PRK11639 zinc uptake transcrip 44.2 1.3E+02 0.0028 22.3 7.4 48 226-273 31-78 (169)
410 PRK06645 DNA polymerase III su 43.3 2.5E+02 0.0055 25.4 10.6 20 305-324 271-290 (507)
411 PF08542 Rep_fac_C: Replicatio 42.8 38 0.00083 21.7 3.2 50 253-305 3-52 (89)
412 PF04090 RNA_pol_I_TF: RNA pol 42.5 1.6E+02 0.0034 22.7 7.4 62 219-281 40-102 (199)
413 PRK14958 DNA polymerase III su 42.5 2.6E+02 0.0057 25.3 10.7 30 294-324 249-278 (509)
414 KOG0991 Replication factor C, 41.9 1.8E+02 0.0039 23.2 11.6 81 178-266 202-283 (333)
415 KOG0687 26S proteasome regulat 41.7 2.1E+02 0.0046 24.0 11.0 163 126-317 36-207 (393)
416 PRK14956 DNA polymerase III su 41.3 2.7E+02 0.0058 25.0 10.9 94 106-209 196-289 (484)
417 KOG2063 Vacuolar assembly/sort 40.7 3.2E+02 0.0069 26.7 9.6 125 168-303 504-638 (877)
418 COG1466 HolA DNA polymerase II 40.5 2.2E+02 0.0048 23.9 8.3 79 244-324 151-241 (334)
419 PF09868 DUF2095: Uncharacteri 39.7 58 0.0013 22.2 3.5 26 28-53 66-91 (128)
420 KOG4648 Uncharacterized conser 39.5 1.5E+02 0.0033 25.0 6.6 53 176-246 105-157 (536)
421 PRK14970 DNA polymerase III su 39.1 2.4E+02 0.0053 24.0 9.2 32 214-247 183-214 (367)
422 PF02184 HAT: HAT (Half-A-TPR) 38.8 41 0.00089 17.0 2.1 22 4-27 3-24 (32)
423 PRK14958 DNA polymerase III su 38.2 3.1E+02 0.0067 24.9 11.2 90 105-205 193-282 (509)
424 KOG2659 LisH motif-containing 38.1 2E+02 0.0043 22.7 9.6 98 216-316 22-128 (228)
425 KOG3364 Membrane protein invol 37.8 1.5E+02 0.0033 21.2 8.7 66 217-282 29-98 (149)
426 PRK11639 zinc uptake transcrip 37.7 1.7E+02 0.0037 21.7 7.0 62 244-307 15-76 (169)
427 smart00777 Mad3_BUB1_I Mad3/BU 37.7 88 0.0019 21.9 4.4 44 129-192 80-123 (125)
428 PF02847 MA3: MA3 domain; Int 37.3 1E+02 0.0022 20.7 4.8 61 259-322 6-68 (113)
429 cd08819 CARD_MDA5_2 Caspase ac 37.1 1.2E+02 0.0025 19.7 7.2 68 238-312 20-87 (88)
430 PF02607 B12-binding_2: B12 bi 36.3 47 0.001 20.6 2.8 32 34-65 12-43 (79)
431 PF06552 TOM20_plant: Plant sp 36.2 1.9E+02 0.0041 21.9 11.6 14 288-301 110-123 (186)
432 PF12554 MOZART1: Mitotic-spin 36.1 77 0.0017 17.8 3.2 23 302-324 15-37 (48)
433 PRK07452 DNA polymerase III su 36.1 2.6E+02 0.0055 23.3 8.7 73 212-289 144-232 (326)
434 PF10255 Paf67: RNA polymerase 35.2 1.1E+02 0.0024 26.5 5.5 60 223-282 125-191 (404)
435 cd00245 Glm_e Coenzyme B12-dep 34.8 47 0.001 28.9 3.2 48 3-53 26-73 (428)
436 KOG1464 COP9 signalosome, subu 34.6 2.5E+02 0.0055 22.9 9.6 127 180-320 39-174 (440)
437 COG2987 HutU Urocanate hydrata 34.5 57 0.0012 28.4 3.6 50 125-208 216-265 (561)
438 PF10155 DUF2363: Uncharacteri 34.4 1.6E+02 0.0036 20.6 10.7 44 239-282 82-125 (126)
439 PF06368 Met_asp_mut_E: Methyl 34.3 1.2E+02 0.0026 26.4 5.5 157 3-178 30-197 (441)
440 PF14669 Asp_Glu_race_2: Putat 34.1 2.2E+02 0.0047 21.9 13.7 55 225-279 137-205 (233)
441 TIGR03581 EF_0839 conserved hy 33.7 1.7E+02 0.0037 22.8 5.6 91 127-247 136-235 (236)
442 PRK13341 recombination factor 33.7 4.3E+02 0.0094 25.3 14.9 27 123-149 269-295 (725)
443 PF07575 Nucleopor_Nup85: Nup8 33.5 1.7E+02 0.0036 26.9 6.8 63 124-196 371-433 (566)
444 PF04097 Nic96: Nup93/Nic96; 33.4 4E+02 0.0088 24.8 13.7 68 91-159 84-157 (613)
445 COG3947 Response regulator con 33.2 2.8E+02 0.0061 23.0 15.5 165 129-318 150-340 (361)
446 PHA02875 ankyrin repeat protei 33.0 3.2E+02 0.007 23.6 15.3 45 9-57 16-62 (413)
447 PRK15180 Vi polysaccharide bio 32.9 3.6E+02 0.0079 24.1 13.3 88 229-319 332-419 (831)
448 KOG2297 Predicted translation 32.8 2.9E+02 0.0064 23.0 14.4 46 221-275 295-341 (412)
449 KOG0403 Neoplastic transformat 32.5 3.6E+02 0.0077 23.9 13.9 26 25-50 347-372 (645)
450 PRK14961 DNA polymerase III su 32.2 3.2E+02 0.007 23.3 9.5 14 233-246 211-224 (363)
451 PF00244 14-3-3: 14-3-3 protei 32.2 2.6E+02 0.0056 22.2 10.3 52 1-52 14-66 (236)
452 PF01335 DED: Death effector d 32.0 1.4E+02 0.003 19.0 5.6 43 5-48 37-79 (84)
453 PF07443 HARP: HepA-related pr 31.9 36 0.00079 19.7 1.5 28 39-66 8-35 (55)
454 PHA02798 ankyrin-like protein; 31.9 3.8E+02 0.0081 24.0 9.2 17 186-202 87-103 (489)
455 COG2405 Predicted nucleic acid 31.6 1.2E+02 0.0025 21.7 4.1 31 233-263 122-152 (157)
456 PF11768 DUF3312: Protein of u 31.4 3E+02 0.0066 25.0 7.5 93 226-321 414-508 (545)
457 cd08780 Death_TRADD Death Doma 31.4 1.3E+02 0.0029 19.5 4.0 47 264-313 41-87 (90)
458 PF14649 Spatacsin_C: Spatacsi 31.4 2.5E+02 0.0054 23.3 6.7 77 218-301 18-98 (296)
459 KOG3636 Uncharacterized conser 31.3 3.7E+02 0.008 23.7 8.3 79 17-99 177-272 (669)
460 PRK14135 recX recombination re 31.1 2.8E+02 0.0061 22.3 16.4 12 241-252 127-138 (263)
461 PF12926 MOZART2: Mitotic-spin 31.0 1.5E+02 0.0033 19.2 7.5 42 241-282 29-70 (88)
462 PRK07003 DNA polymerase III su 31.0 5E+02 0.011 25.2 9.4 18 305-322 259-276 (830)
463 PF10345 Cohesin_load: Cohesin 30.8 4.4E+02 0.0096 24.5 21.8 209 55-318 27-252 (608)
464 PF15469 Sec5: Exocyst complex 30.5 2.3E+02 0.0051 21.2 7.7 47 29-75 92-140 (182)
465 PF14561 TPR_20: Tetratricopep 30.4 1.6E+02 0.0034 19.1 7.5 31 219-249 21-51 (90)
466 KOG2659 LisH motif-containing 30.4 2.7E+02 0.0059 21.9 9.7 100 167-280 25-128 (228)
467 KOG1941 Acetylcholine receptor 30.1 3.6E+02 0.0078 23.2 14.7 135 171-317 125-272 (518)
468 PF11838 ERAP1_C: ERAP1-like C 30.0 3.2E+02 0.0069 22.6 15.7 130 167-316 128-262 (324)
469 PF07840 FadR_C: FadR C-termin 29.9 2E+02 0.0043 21.4 5.3 97 37-141 48-147 (164)
470 smart00031 DED Death effector 29.8 1.5E+02 0.0032 18.6 4.5 15 39-53 37-51 (79)
471 KOG2753 Uncharacterized conser 29.7 3.4E+02 0.0074 22.9 9.4 120 114-234 66-199 (378)
472 PRK08691 DNA polymerase III su 29.1 5.1E+02 0.011 24.7 10.9 89 104-203 192-280 (709)
473 COG2405 Predicted nucleic acid 29.0 1.1E+02 0.0024 21.9 3.7 36 30-65 116-151 (157)
474 TIGR03362 VI_chp_7 type VI sec 29.0 3.4E+02 0.0073 22.6 7.1 57 262-319 220-278 (301)
475 cd07229 Pat_TGL3_like Triacylg 28.7 3.9E+02 0.0085 23.2 9.0 65 241-305 172-251 (391)
476 PF08967 DUF1884: Domain of un 28.6 66 0.0014 20.4 2.3 18 308-325 12-29 (85)
477 KOG1550 Extracellular protein 28.4 4.7E+02 0.01 24.0 25.2 47 4-51 228-277 (552)
478 cd00045 DED The Death Effector 28.4 1.6E+02 0.0034 18.5 4.3 15 39-53 36-50 (77)
479 KOG2396 HAT (Half-A-TPR) repea 28.3 4.5E+02 0.0097 23.7 25.1 94 223-319 463-558 (568)
480 TIGR03184 DNA_S_dndE DNA sulfu 28.3 1.9E+02 0.0042 19.5 6.3 17 185-201 5-22 (105)
481 PF04910 Tcf25: Transcriptiona 28.2 3.8E+02 0.0083 22.9 16.4 122 110-248 38-167 (360)
482 PF11817 Foie-gras_1: Foie gra 28.2 3.1E+02 0.0067 21.8 10.0 59 224-282 182-245 (247)
483 KOG4234 TPR repeat-containing 27.9 2.9E+02 0.0063 21.5 9.5 90 230-321 105-198 (271)
484 PF05664 DUF810: Protein of un 27.8 4.8E+02 0.01 24.7 8.5 74 161-248 210-294 (677)
485 KOG2536 MAM33, mitochondrial m 27.6 1.8E+02 0.0039 23.3 5.0 45 272-319 215-259 (263)
486 KOG1114 Tripeptidyl peptidase 27.6 6.2E+02 0.013 25.1 10.6 83 236-319 1212-1294(1304)
487 PRK09111 DNA polymerase III su 27.5 5.1E+02 0.011 24.1 9.9 14 269-282 272-285 (598)
488 TIGR01228 hutU urocanate hydra 27.5 98 0.0021 27.4 3.9 51 125-209 207-257 (545)
489 COG2812 DnaX DNA polymerase II 27.4 4.8E+02 0.01 23.7 10.8 93 105-208 193-285 (515)
490 PRK06585 holA DNA polymerase I 27.3 3.8E+02 0.0082 22.6 8.0 28 296-324 217-244 (343)
491 PRK14960 DNA polymerase III su 27.1 5.5E+02 0.012 24.4 9.8 29 294-323 248-276 (702)
492 TIGR01503 MthylAspMut_E methyl 26.9 95 0.0021 27.3 3.7 47 4-53 70-116 (480)
493 cd07153 Fur_like Ferric uptake 26.9 1.8E+02 0.0038 19.6 4.6 43 262-305 7-49 (116)
494 PF14840 DNA_pol3_delt_C: Proc 26.8 45 0.00099 23.3 1.6 26 1-26 10-35 (125)
495 PF14669 Asp_Glu_race_2: Putat 26.8 3E+02 0.0065 21.2 12.3 72 171-245 135-206 (233)
496 PF05664 DUF810: Protein of un 26.7 3.4E+02 0.0074 25.6 7.4 73 104-194 209-289 (677)
497 PRK13342 recombination factor 26.4 4.4E+02 0.0095 23.0 19.5 101 167-269 175-279 (413)
498 PF08870 DUF1832: Domain of un 26.3 2.2E+02 0.0048 19.5 6.7 17 185-201 6-23 (113)
499 cd08315 Death_TRAILR_DR4_DR5 D 26.2 2E+02 0.0043 19.0 5.5 49 271-322 47-95 (96)
500 PF04090 RNA_pol_I_TF: RNA pol 26.1 3.1E+02 0.0067 21.1 11.0 29 294-322 142-170 (199)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-55 Score=401.61 Aligned_cols=321 Identities=23% Similarity=0.348 Sum_probs=303.7
Q ss_pred CCCcchHHHHHHHHHhcCCC--------------------------------CchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFT--------------------------------PNMVTFNSLIKGLCTEGRILEAARLFKK 48 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~--------------------------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 48 (325)
.|++++|+++|+.|.+.|+. ||..+|+.+|.+|++.|+++.|.++|++
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 36777788888888777642 7889999999999999999999999999
Q ss_pred HHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc----------hhhcCCC
Q 048780 49 LNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109 (325)
Q Consensus 49 m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~~~~~ 109 (325)
|.+.|+.||..+|+.++ +.|.++|++|.+.+ +.||..+|+.+|.+|++.|+ |...|+.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG---VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 99999999999999998 88999999999998 99999999999999999998 7778999
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHH--CCCCCCcccHHHHHHHHHh--------------hcCCCCCchhhHHH
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ--RDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNI 173 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~--------------~~~~~~~~~~~~~~ 173 (325)
||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++ ...+..|+..+|++
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 9999999999999999999999999999986 6899999999999999997 56788999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH------------------HhCCCCCChHhHHHHHHHHHHcCC
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM------------------AINNVPPDSHVYTTYIDGLYKNGF 235 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~------------------~~~~~~~~~~~~~~l~~~~~~~~~ 235 (325)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.++. ...++.|+..+|++||.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999987 456889999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHH
Q 048780 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 236 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
+++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. ..|+.||..||+.++.+|.+.|++++|.++++
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 78999999999999999999999999999999
Q ss_pred HHHHcCCCCC
Q 048780 316 DMEETGLEPN 325 (325)
Q Consensus 316 ~m~~~g~~pd 325 (325)
+|.+.|+.||
T Consensus 779 ~M~k~Gi~pd 788 (1060)
T PLN03218 779 QAKEDGIKPN 788 (1060)
T ss_pred HHHHcCCCCC
Confidence 9999999997
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-54 Score=392.89 Aligned_cols=321 Identities=16% Similarity=0.247 Sum_probs=304.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.++ +.|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCc----------hhh--cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD--QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 139 (325)
|++|.+.+ +.||..+|+.||.+|++.|+ |.. .++.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 530 f~~M~~~G---v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 530 YGIMRSKN---VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHcC---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999 99999999999999999998 433 6789999999999999999999999999999999
Q ss_pred HCCCCCCcccHHHHHHHHHh--------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 048780 140 QRDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205 (325)
Q Consensus 140 ~~g~~~~~~~~~~ll~~~~~--------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 205 (325)
+.|+.|+..+|+.++.+|++ ...+..||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999998 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHH------------------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 048780 206 YNTLFM------------------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267 (325)
Q Consensus 206 ~~~ll~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 267 (325)
|+.++. ...++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999987 34578999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----c-------------------CChHHHHHHHHHHHHcCCCC
Q 048780 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----E-------------------GQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p 324 (325)
.|+++.|.++|+.|. +.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.|
T Consensus 767 ~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999 89999999999999976542 1 23468999999999999999
Q ss_pred C
Q 048780 325 N 325 (325)
Q Consensus 325 d 325 (325)
|
T Consensus 846 d 846 (1060)
T PLN03218 846 T 846 (1060)
T ss_pred C
Confidence 7
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-49 Score=356.61 Aligned_cols=313 Identities=22% Similarity=0.321 Sum_probs=262.1
Q ss_pred CCCcchHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~ 70 (325)
.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++ +.|.+
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHH
Confidence 478899999999998764 67899999999999999999999999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCc----------hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 140 (325)
+|++| ..||..+||+++.+|++.|+ |.+.|..|+..+|+.++.+|++.|..+.+.+++..+.+
T Consensus 180 lf~~m-------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 180 LFDEM-------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHhcC-------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 88887 35788999999999999987 67778889999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHh----------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 048780 141 RDVNPNTCTYNTLMDGFAW----------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210 (325)
Q Consensus 141 ~g~~~~~~~~~~ll~~~~~----------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 210 (325)
.|+.||..++++++.+|++ ++.-..+|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999887 444556788899999999999999999999999999889999999998888
Q ss_pred H------------------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 211 M------------------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 211 ~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
. ...++.||..+|++|+++|++.|++++|.++|++|. .||..+|+.||.+|++.|+.+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHH
Confidence 6 345667777788888888888888888888887775 357777888888888888888
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH-cCCCCC
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE-TGLEPN 325 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~pd 325 (325)
+|.++|++|. ..|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.||
T Consensus 409 ~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 409 KAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred HHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 8888888777 667778888888888888888888888888887765 577775
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-49 Score=364.82 Aligned_cols=314 Identities=19% Similarity=0.311 Sum_probs=254.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
.|+++.|.++|+.|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++ +.+.++
T Consensus 235 ~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 235 CGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred CCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 377888888888886 5788889999999999999999999999999889999999999888 678888
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCc------hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 145 (325)
+..+.+.| +.||..+|++|+.+|++.|+ +.+.-..||..+|+++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 311 ~~~~~~~g---~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 311 HGYVVKTG---FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHhC---CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 88888888 88899999999999998888 2233346788888888888888888888888888888888888
Q ss_pred CcccHHHHHHHHHh---------------------------------------------hcCCCCCchhhHHHHHHHHHh
Q 048780 146 NTCTYNTLMDGFAW---------------------------------------------WSKGCRHDVYSYNILINGYCK 180 (325)
Q Consensus 146 ~~~~~~~ll~~~~~---------------------------------------------~~~~~~~~~~~~~~li~~~~~ 180 (325)
|..||+.++.+|++ ++.-..+|..+|+++|.+|++
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 88888888887765 222334566666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHh-----------------------------------------------
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------------------------------------- 213 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----------------------------------------------- 213 (325)
.|+.++|.++|++|.. ++.||..||..++..+
T Consensus 468 ~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 468 NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred CCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 6666666667777764 5889999998887511
Q ss_pred -CCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHH
Q 048780 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292 (325)
Q Consensus 214 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 292 (325)
....+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+..|+.|+..
T Consensus 547 f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred HHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 1126788888888888888888888888888888888888888999888888888888889998888887788888888
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 048780 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 325 (325)
+|+.++.+|.+.|++++|.+++++|. ++||
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd 656 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKMP---ITPD 656 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCC---CCCC
Confidence 88899999988898888888888873 5665
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6e-49 Score=362.45 Aligned_cols=316 Identities=21% Similarity=0.307 Sum_probs=238.7
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~ 72 (325)
|+++.|.++|+.|. +||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++ ..+.+++
T Consensus 135 g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 135 GELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred CChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 77888888888887 5788888988888888888888888888888888888888888887 4566777
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCc------hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 146 (325)
..+.+.| +.||..++++||.+|+++|+ +.+.-..||..+||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 211 ~~~~~~g---~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 211 AHVVRFG---FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHcC---CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 7777777 77777777777777777776 22223355666666666666666666666666666666666666
Q ss_pred cccHHHHHHHHHh---------------------------------------------hcCCCCCchhhHHHHHHHHHhc
Q 048780 147 TCTYNTLMDGFAW---------------------------------------------WSKGCRHDVYSYNILINGYCKD 181 (325)
Q Consensus 147 ~~~~~~ll~~~~~---------------------------------------------~~~~~~~~~~~~~~li~~~~~~ 181 (325)
..||+.++.+|++ .+.-..||..+||++|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 6666666666553 3344567888999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHH------------------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 048780 182 RNVEDAVSLCREMLSEGIRADATTYNTLFM------------------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243 (325)
Q Consensus 182 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (325)
|++++|.++|++|.+.|+.||..||..++. ...+..|+..+|++|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999987 23455666666666666666666666666666
Q ss_pred HHHhhC------------------------------CC------------------------------------------
Q 048780 244 SAIGNH------------------------------KC------------------------------------------ 251 (325)
Q Consensus 244 ~~m~~~------------------------------~~------------------------------------------ 251 (325)
++|.+. ++
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 555432 22
Q ss_pred -----------------------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChH
Q 048780 252 -----------------------VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308 (325)
Q Consensus 252 -----------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (325)
.||..+|+++|.+|++.|+.++|.++|++|. +.|+.||..||+.++.+|.+.|+++
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCcccHHHHHHHHhhcChHH
Confidence 3455567777777788888888888888888 6788888888888888888888888
Q ss_pred HHHHHHHHHH-HcCCCCC
Q 048780 309 KANGLLLDME-ETGLEPN 325 (325)
Q Consensus 309 ~a~~~~~~m~-~~g~~pd 325 (325)
+|.++|++|. +.|+.||
T Consensus 607 ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 8888888888 6788875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-48 Score=352.09 Aligned_cols=310 Identities=19% Similarity=0.303 Sum_probs=256.2
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~ 72 (325)
|+++.|.+++..|.+.|+.||..+|+.|+..|++.|++++|.++|++|. .||..+||.++ ++|+++|
T Consensus 137 ~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 5677888888888888888888889999999988899998988888886 57888888888 7888888
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCc----------hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 142 (325)
++|.+.+ +.|+..+|+.++.+|+..|. +.+.|+.||..+|++||++|++.|++++|.++|++|.
T Consensus 213 ~~M~~~g---~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 286 (697)
T PLN03081 213 REMWEDG---SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--- 286 (697)
T ss_pred HHHHHhC---CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence 8888887 88888888888888888776 4567788888888888888888888888888888774
Q ss_pred CCCCcccHHHHHHHHHh--------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 048780 143 VNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208 (325)
Q Consensus 143 ~~~~~~~~~~ll~~~~~--------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 208 (325)
.+|..+|++++.+|++ ...+..||..+|++++.+|++.|++++|.+++..|.+.|+.||..+++.
T Consensus 287 -~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 287 -EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred -CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 3577788888888876 4567788888888888888888888888888888888888888888888
Q ss_pred HHH--------------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHH
Q 048780 209 LFM--------------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274 (325)
Q Consensus 209 ll~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 274 (325)
++. ...-..||..+||+||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 876 122345788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 048780 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 275 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 325 (325)
.++|+.|.++.|+.|+..+|+.++.+|++.|++++|.+++++| +++||
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~ 493 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPT 493 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCC
Confidence 8888888766788888888888888888888888888887765 45554
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=5.7e-19 Score=150.28 Aligned_cols=276 Identities=13% Similarity=0.073 Sum_probs=214.9
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hhHHHHH---------HHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV---ITFNTLA---------LVA 68 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~l~---------~~a 68 (325)
.|++++|+..|+.+.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++. ..+..+. +.|
T Consensus 48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478999999999999875 456778999999999999999999999999875422221 2223322 788
Q ss_pred HHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCch----------hhcCCCCC----hhhHHHHHHHHHccCcHHHHHHH
Q 048780 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPD----VVTLNVMTDNLSKDGKMEEANCL 134 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~ 134 (325)
.++|+++.+.. +++..++..+...+.+.|+. ...+..++ ...|..+...+.+.|++++|.+.
T Consensus 127 ~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 127 EELFLQLVDEG----DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHcCC----cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88999888753 45677888888888888871 11121111 12455677778888999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhC
Q 048780 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214 (325)
Q Consensus 135 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (325)
|+++.+.. |+ +...+..+...+.+.|++++|.++|+++.+.+ |+
T Consensus 203 ~~~al~~~--p~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~------------ 246 (389)
T PRK11788 203 LKKALAAD--PQ--------------------CVRASILLGDLALAQGDYAAAIEALERVEEQD--PE------------ 246 (389)
T ss_pred HHHHHhHC--cC--------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hh------------
Confidence 99887652 32 45567778899999999999999999998752 11
Q ss_pred CCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhH
Q 048780 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294 (325)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 294 (325)
....+++.+..+|...|+.++|...++.+.+.. |+...+..+...+.+.|++++|..+++.+.+ . .|+..++
T Consensus 247 ---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~--~P~~~~~ 318 (389)
T PRK11788 247 ---YLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLR-R--HPSLRGF 318 (389)
T ss_pred ---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-h--CcCHHHH
Confidence 113456778999999999999999999998764 6666778999999999999999999998873 3 6899999
Q ss_pred HHHHHHHHc---cCChHHHHHHHHHHHHcCCCCC
Q 048780 295 NIMIHGFCK---EGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 295 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~pd 325 (325)
..++..+.. .|+.+++..++++|.+.+++||
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 988887764 5689999999999999888775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=2.6e-16 Score=147.95 Aligned_cols=305 Identities=10% Similarity=0.017 Sum_probs=171.3
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~ 72 (325)
|++++|..+|+.+...+ +.+...+..+...+.+.|++++|..+++++.+.. +.+...|..+. +.|...|
T Consensus 547 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666666666665543 3445555566666666666666666666665432 22333443333 5555555
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCchhh--------cCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 143 (325)
+.+.+.. +.+...+..+..++.+.|+..+ ....| +..++..+...+...|++++|.++++.+.+.+
T Consensus 625 ~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 625 KKLLALQ----PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 5555443 2344455555555555555110 11122 34455555555555555555555555555443
Q ss_pred CCCcccHHHHHHHHHh------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048780 144 NPNTCTYNTLMDGFAW------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211 (325)
Q Consensus 144 ~~~~~~~~~ll~~~~~------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 211 (325)
..+...+..+...+.. ......|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+..
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 778 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAE 778 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1222223332222222 001112233444455555555555555555555555432 111212111111
Q ss_pred -----------------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHH
Q 048780 212 -----------------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274 (325)
Q Consensus 212 -----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 274 (325)
.....+++..+++.+...+...|+ ++|+..+++...... -+..++..+...+...|++++|
T Consensus 779 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 779 LYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHH
Confidence 011134566777888888888888 778888888766532 2556677788888888999999
Q ss_pred HHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 275 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
.+.++++.+ .+ +.+..++..+..++.+.|++++|.+++++|.
T Consensus 857 ~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 857 LPLLRKAVN-IA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHh-hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999988883 33 2377888888999999999999999998886
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.78 E-value=3.1e-15 Score=140.72 Aligned_cols=308 Identities=11% Similarity=0.036 Sum_probs=166.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
.|++++|+.+++.+.... +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+. +.|.+.
T Consensus 444 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367888888888887654 5567788888888888888888888888887642 12222222222 667777
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCchhh---------cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD---------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 142 (325)
|+.+.+.. +.+..++..+...+.+.|+..+ ...+.+...+..+...+.+.|++++|.++++.+.+..
T Consensus 522 ~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 522 FEKVLTID----PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHhC----cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 77776654 4456666677777766666110 0112234445555566666666666666666555432
Q ss_pred CCCCcccHHHHHHHHHh-------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 048780 143 VNPNTCTYNTLMDGFAW-------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209 (325)
Q Consensus 143 ~~~~~~~~~~ll~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 209 (325)
..+...+..+...+.. .-...+.+...+..+..++.+.|++++|...|+++.+.. +.+..++..+
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 2233344444444433 001112234445555555556666666666665555432 1112222211
Q ss_pred HH-----------------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 210 FM-----------------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 210 l~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
.. .....+++...+..+...+...|++++|.+.++.+...+ |+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 11 111123344455555555666666666666666555443 33344555555555666666
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 754 ~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 754 EAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 6665555554221 334455555555555566666666666555543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=3.5e-15 Score=127.07 Aligned_cols=257 Identities=11% Similarity=0.036 Sum_probs=192.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHHHHH
Q 048780 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIID 95 (325)
Q Consensus 25 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~ 95 (325)
........+...|++++|...|+++.+.+ +.+..++..+. +.|..+++.+..............+..+..
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 33334455678899999999999999863 22333454443 788999998887541100112356788888
Q ss_pred HHHhcCchhh---------cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCC
Q 048780 96 GLCKDGFMMD---------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166 (325)
Q Consensus 96 ~~~~~~~~~~---------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 166 (325)
.|.+.|+... ...+.+..++..++..+.+.|++++|.+.++.+.+.+..+... .
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------------~ 178 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-----------------E 178 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------H
Confidence 8888887111 1123467788999999999999999999999988764322110 0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAAD------------------PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 12245667788889999999999999998752 223456777889999999999999999999
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+.+......++..+..+|.+.|++++|...++.+.. . .|+...+..+...+.+.|++++|.++++++.+.
T Consensus 241 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 241 EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8765333356788999999999999999999999873 3 567777788999999999999999999998765
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.5e-14 Score=115.97 Aligned_cols=298 Identities=14% Similarity=0.159 Sum_probs=199.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH-----HHHHHHHHHHHHhcCCccCccHHHHHHHH
Q 048780 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----LVALNLFEEMVNEFGVICKPDVVTCTNII 94 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~ll 94 (325)
+.+..+|..+|.++++-...+.|.+++++-.....+.+..+||.++ ....++..+|.... +.||..|+|+++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqk---m~Pnl~TfNalL 280 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQK---MTPNLFTFNALL 280 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhh---cCCchHhHHHHH
Confidence 5677899999999999999999999999999888899999999999 44578899999988 999999999999
Q ss_pred HHHHhcCc--------------hhhcCCCCChhhHHHHHHHHHccCcHHH-HHHHHHHHHHC----CCCCC----cccHH
Q 048780 95 DGLCKDGF--------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE-ANCLLEVMIQR----DVNPN----TCTYN 151 (325)
Q Consensus 95 ~~~~~~~~--------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~----g~~~~----~~~~~ 151 (325)
++.++.|. |.+-|+.|+..+|..+|..+++.++..+ |..++.++... -++|- ..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999996 8889999999999999999999988755 45555555432 23333 23345
Q ss_pred HHHHHHHh--------------------------------------------------------hcCCCCCchhhHHHHH
Q 048780 152 TLMDGFAW--------------------------------------------------------WSKGCRHDVYSYNILI 175 (325)
Q Consensus 152 ~ll~~~~~--------------------------------------------------------~~~~~~~~~~~~~~li 175 (325)
..++.|.+ ..+-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 55666655 1222334444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCCh--HhHHHHHHHHHHc--CCHHHHHHHHHHHhhCCC
Q 048780 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS--HVYTTYIDGLYKN--GFVLEAMKVFSAIGNHKC 251 (325)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~ 251 (325)
++..-.|+++-.-+++..++..|.......-..++......+|+. .....+-.+.++. .-.+.....-.+|...
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 555555555555555555555554444444433333333333222 2222222222221 1111112222334433
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---cHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048780 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP---DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 252 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 322 (325)
.......+...-.+.+.|..++|.++|..+.++.+-.| ......-++++-.+.++...|..+++-|...++
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34555667777788899999999999998854444334 344444667778888999999999999977654
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.68 E-value=1.1e-12 Score=118.01 Aligned_cols=290 Identities=11% Similarity=0.044 Sum_probs=195.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh-HHHHH---------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT-FNTLA---------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~l~---------~~a~~ 70 (325)
+|++++|+.+++...... +-+...+..++......|++++|.+.|+++.+. .|+... +..+. +.|+.
T Consensus 55 ~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred cCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 488888999988888775 334556666667777889999999999998875 444332 32221 77888
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhh--------cCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPD-VVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
.++++.+.. +.+...+..+...+...|+..+ ....|+ ...+..+ ..+.+.|++++|...++.+.+.
T Consensus 132 ~l~~Al~l~----P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 132 LAEQAWLAF----SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHhC----CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 888887753 3456777778888888887211 122333 2233233 3477788889998888887665
Q ss_pred CCCCCcccHHHHHHHHHh-------------hcCCCCCchhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCChh
Q 048780 142 DVNPNTCTYNTLMDGFAW-------------WSKGCRHDVYSYNILINGYCKDRNVED----AVSLCREMLSEGIRADAT 204 (325)
Q Consensus 142 g~~~~~~~~~~ll~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~ 204 (325)
...++......+..++.. .-...+.+...+..+...+...|++++ |...|++..+.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l------- 279 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF------- 279 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-------
Confidence 322222222222222221 011112244555666666666777664 56666666553
Q ss_pred hHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 205 ~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
.+.+..++..+...+...|++++|...+++....... +...+..+..++.+.|++++|...++.+...
T Consensus 280 -----------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 280 -----------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred -----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2345678888899999999999999999998876532 5667888889999999999999999988743
Q ss_pred CCCCCcHHh-HHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 285 PGLTPDVVT-YNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 285 ~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.|+... +..+..++...|+.++|...+++..+.
T Consensus 348 ---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 ---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 455433 334566789999999999999988654
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.2e-13 Score=109.44 Aligned_cols=285 Identities=15% Similarity=0.170 Sum_probs=218.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH------------HHHHHHHHHHHHhcCCccCccHHHH
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------------LVALNLFEEMVNEFGVICKPDVVTC 90 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~------------~~a~~~~~~~~~~~~~~~~~~~~~~ 90 (325)
+++=|.|+.. ...|.+..+.-+|+.|+..|+..+...-..++ -.-.+.|-.|...+ ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~----E~S~~sW 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG----EDSTSSW 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc----ccccccc
Confidence 4455556554 56788889999999999998887777666555 11223333333333 1222222
Q ss_pred HHHHHHHHhcCc---hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh--------
Q 048780 91 TNIIDGLCKDGF---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW-------- 159 (325)
Q Consensus 91 ~~ll~~~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------- 159 (325)
- .|. +...-.+.+..+|.++|.+.|+--..+.|.+++++......+.+..+||.+|.+.+.
T Consensus 191 K--------~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~ 262 (625)
T KOG4422|consen 191 K--------SGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVA 262 (625)
T ss_pred c--------cccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHH
Confidence 1 111 111234568889999999999999999999999999999999999999999988775
Q ss_pred --hcCCCCCchhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHH---------------------
Q 048780 160 --WSKGCRHDVYSYNILINGYCKDRNVED----AVSLCREMLSEGIRADATTYNTLFMA--------------------- 212 (325)
Q Consensus 160 --~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~--------------------- 212 (325)
......||..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..++..
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 567889999999999999999998765 57788999999999999999999871
Q ss_pred ------hCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCcC---HHHHHHHHHHHHhcCChHHHHHHHH
Q 048780 213 ------INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK----CVLT---IETCNCLIDGLCKIGRLKIAWDIFH 279 (325)
Q Consensus 213 ------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (325)
....+.|...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+.....++
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223355667788899999999999999887765421 2233 2235678888889999999999999
Q ss_pred HHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048780 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 280 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
.|. -.-+-|+..+...+++|..-.|.++-.-+++.++...|
T Consensus 423 ~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 423 DLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred Hhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 998 66678899999999999999999999999999998877
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=2.9e-14 Score=115.53 Aligned_cols=170 Identities=16% Similarity=0.101 Sum_probs=112.7
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 109 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
.++...+..++..+.+.++++++.++++.+....-.+ .+...|..+...+.+.|+.++|.
T Consensus 107 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 107 DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP--------------------DSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -----------H-HHHTT-HHHHHHHHHHHHH-T-----------------------T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC--------------------CCHHHHHHHHHHHHHcCCHHHHH
Confidence 3566777888899999999999999999987542222 37778888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 268 (325)
+.+++..+.. |.|..+.+.++..+...|+.+++.++++...+.. ..|+..+..+..+|...
T Consensus 167 ~~~~~al~~~------------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 167 RDYRKALELD------------------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHH-------------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHcC------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccc
Confidence 9999999862 4467788889999999999999999998887664 45667888999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
|+.++|...|+...+.. +.|......+..++...|+.++|.++.++..+
T Consensus 228 g~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 99999999999987432 44778888999999999999999999887643
No 15
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.4e-11 Score=104.58 Aligned_cols=261 Identities=15% Similarity=0.051 Sum_probs=190.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH-----------HHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSL-IKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----------LVA 68 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-----------~~a 68 (325)
.||++.|.+.+....+.. +++..+..+ .....+.|+++.|.+.|.++.+. .|+......+. +.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 388999998888766542 233444333 44447889999999999999864 55554333221 677
Q ss_pred HHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcc
Q 048780 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 148 (325)
...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++..
T Consensus 173 l~~l~~~~~~~-----------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 173 RHGVDKLLEVA-----------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred HHHHHHHHhcC-----------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 77777776654 2345567778888999999999999999999887653331
Q ss_pred -------cHHHHHHHHHh-------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 048780 149 -------TYNTLMDGFAW-------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208 (325)
Q Consensus 149 -------~~~~ll~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 208 (325)
.|..++..... .....+.+......+...+...|+.++|.+++++..+. .|+..
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~---- 297 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER---- 297 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH----
Confidence 11111211111 11233457778888999999999999999999988874 22221
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 048780 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288 (325)
Q Consensus 209 ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (325)
-.++.+....++.+++.+..+...+... -|...+..+-+.|.+.+++++|.+.|+... . ..
T Consensus 298 ---------------l~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al-~--~~ 358 (398)
T PRK10747 298 ---------------LVLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAAL-K--QR 358 (398)
T ss_pred ---------------HHHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-h--cC
Confidence 1124444566999999999999887653 367788899999999999999999999987 3 37
Q ss_pred CcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
|+...+..+...+.+.|+.++|.+++++-..
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998643
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.56 E-value=2.1e-11 Score=109.67 Aligned_cols=245 Identities=16% Similarity=0.074 Sum_probs=175.1
Q ss_pred CCcchHHHHHHHHHhcC-C-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-hHHHHH---------HHHH
Q 048780 2 GRASGGFVLLGRILMSC-F-TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI-TFNTLA---------LVAL 69 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~l~---------~~a~ 69 (325)
+++++|.+.|+.....+ . +.....|+.+...+...|++++|...|++..+. .|+.. .|..+. +.|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 46788999999988764 2 334567888888888999999999999998865 34422 332221 5666
Q ss_pred HHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCccc
Q 048780 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149 (325)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 149 (325)
..|+...+.. +.+...|..+...+...|++++|.+.|++..+. .|+
T Consensus 386 ~~~~~al~~~-----------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~--- 431 (615)
T TIGR00990 386 EDFDKALKLN-----------------------------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPD--- 431 (615)
T ss_pred HHHHHHHHhC-----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--Ccc---
Confidence 6666665543 224556777778888899999999999988765 343
Q ss_pred HHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHH
Q 048780 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229 (325)
Q Consensus 150 ~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~ 229 (325)
+...+..+..++.+.|++++|+..|++..+. .+.+..+++.+...
T Consensus 432 -----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------------------~P~~~~~~~~lg~~ 476 (615)
T TIGR00990 432 -----------------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN------------------FPEAPDVYNYYGEL 476 (615)
T ss_pred -----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHH
Confidence 4556677778888999999999999988764 23356677778888
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHH------HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIE------TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (325)
+...|++++|.+.|+.........+.. .++.....+...|++++|.+++++... .. +.+...+..+...+.+
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-l~-p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-ID-PECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cC-CCcHHHHHHHHHHHHH
Confidence 999999999999998876643221111 122223334456899999999988762 21 2344568888889999
Q ss_pred cCChHHHHHHHHHHHH
Q 048780 304 EGQHQKANGLLLDMEE 319 (325)
Q Consensus 304 ~g~~~~a~~~~~~m~~ 319 (325)
.|++++|.+++++..+
T Consensus 555 ~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 555 QGDVDEALKLFERAAE 570 (615)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999888754
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=3.9e-13 Score=116.86 Aligned_cols=255 Identities=15% Similarity=0.100 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHH
Q 048780 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVV 88 (325)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~ 88 (325)
+++-.+...|+.|+..+|.++|.-|+..|+.+.|- +|..|+-.. .+.+..
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-----------------------------Lpv~e~ 60 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-----------------------------LPVREG 60 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-----------------------------ccccch
Confidence 46677888999999999999999999999999999 998887542 566778
Q ss_pred HHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-------CCCCCcccHHHHHHHHHhhc
Q 048780 89 TCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR-------DVNPNTCTYNTLMDGFAWWS 161 (325)
Q Consensus 89 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~~ 161 (325)
.++.++.+..++++++... .|.+.||..|+.+|...||+..-..+=+.|... |+..-...+-..++++
T Consensus 61 vf~~lv~sh~~And~Enpk-ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~---- 135 (1088)
T KOG4318|consen 61 VFRGLVASHKEANDAENPK-EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC---- 135 (1088)
T ss_pred hHHHHHhcccccccccCCC-CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC----
Confidence 8888998888888887776 889999999999999999976622222223222 2221111111111111
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCCCChhhHHHHHH-HhCCC-CCChHhHHHHH
Q 048780 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE------------GIRADATTYNTLFM-AINNV-PPDSHVYTTYI 227 (325)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------g~~~~~~~~~~ll~-~~~~~-~~~~~~~~~l~ 227 (325)
.+.-||.. ..+.-..-.|.++.+.+++..+-.. .+.++. -+..++. ..... .|+..+|.+++
T Consensus 136 p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~nt-pvekLl~~cksl~e~~~s~~l~a~l 211 (1088)
T KOG4318|consen 136 PHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNT-PVEKLLNMCKSLVEAPTSETLHAVL 211 (1088)
T ss_pred cccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCc-hHHHHHHHHHHhhcCCChHHHHHHH
Confidence 12223322 2333444455555555555433221 111111 1112221 11112 58999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
.+-.-+|+.+.|..++.+|++.|+..+..-|..|+-+ .++...+..++..|. ..|+.|+..|+...+..+...|.
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999999999988888866 788888999999888 89999999999988888877554
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.55 E-value=1.3e-10 Score=111.63 Aligned_cols=290 Identities=14% Similarity=0.110 Sum_probs=178.9
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchhHHHH---------------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP-NVITFNTL--------------- 64 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l--------------- 64 (325)
.|++++|+..|+...+.. +.+...+..+...+.+.|++++|...|++..+..-.. ....|..+
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 478899999999988775 4578889999999999999999999999988753211 11111111
Q ss_pred -H-----HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhh--------cCCCCC-hhhHHH------------
Q 048780 65 -A-----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPD-VVTLNV------------ 117 (325)
Q Consensus 65 -~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~-~~~~~~------------ 117 (325)
+ ++|.+.|+++.+.. +.+...+..+-..+...|+..+ ....|+ ...+..
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 1 66777888877754 3455666677777777776111 111222 222222
Q ss_pred ------------------------------HHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCc
Q 048780 118 ------------------------------MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167 (325)
Q Consensus 118 ------------------------------ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~ 167 (325)
+...+...|++++|++.|++..+. .|+ +
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~--------------------~ 494 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPG--------------------S 494 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC--------------------C
Confidence 233344556666666666666554 232 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------------------------CCCChhhHHH-----
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEG----------------------------------IRADATTYNT----- 208 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------------------~~~~~~~~~~----- 208 (325)
...+..+...|.+.|++++|...+++..+.. ..++......
T Consensus 495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 3344445555555555555555555554321 1111000000
Q ss_pred -H----------------HHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCh
Q 048780 209 -L----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271 (325)
Q Consensus 209 -l----------------l~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 271 (325)
. +......+.+...+..+...+.+.|++++|++.|+...+... .+...+..+...|...|++
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCH
Confidence 0 001112344556667778888888888888888888877642 3677788888888888888
Q ss_pred HHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 272 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
++|.+.++...... +.+...+..+..++...|++++|.++++++...
T Consensus 654 ~eA~~~l~~ll~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 654 AAARAQLAKLPATA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhccC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888766321 123455666677777888888888888887653
No 19
>PF13041 PPR_2: PPR repeat family
Probab=99.52 E-value=4.9e-14 Score=81.55 Aligned_cols=50 Identities=40% Similarity=0.583 Sum_probs=36.1
Q ss_pred CChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 048780 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267 (325)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 267 (325)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666777777777777777777777777777777777777777777664
No 20
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=1.1e-10 Score=99.65 Aligned_cols=267 Identities=11% Similarity=0.005 Sum_probs=185.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh-----HHHHH------HHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVT-FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT-----FNTLA------LVA 68 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-----~~~l~------~~a 68 (325)
.|+++.|.+.+....+. .|+... +-.....+.+.|+++.|.+.+++..+. .|+... +..+. +.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 48999999999887766 354333 344456777889999999999998764 344432 11111 777
Q ss_pred HHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcc
Q 048780 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 148 (325)
...++.+.+.. +-+...+..+...+.+.|++++|.+.++.+.+.+..++..
T Consensus 173 l~~l~~l~~~~-----------------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 173 RHGVDKLLEMA-----------------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred HHHHHHHHHhC-----------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 88888887764 2244567778888999999999999999999887554332
Q ss_pred cHHHHHHHH---H----h-------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 048780 149 TYNTLMDGF---A----W-------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208 (325)
Q Consensus 149 ~~~~ll~~~---~----~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 208 (325)
....-..++ . . .....+.+...+..+...+...|+.++|.+++++..+.. |+....
T Consensus 224 ~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~-- 299 (409)
T TIGR00540 224 FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAI-- 299 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccc--
Confidence 211111111 0 0 111122478889999999999999999999999999863 221100
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048780 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI--ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286 (325)
Q Consensus 209 ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 286 (325)
.............++.+.+.+.++...+.. +-|+ ....++-..|.+.|++++|.+.|+... ...
T Consensus 300 ------------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~ 365 (409)
T TIGR00540 300 ------------SLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACK 365 (409)
T ss_pred ------------hhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-Hhh
Confidence 000111122233567788888887776553 2244 667788999999999999999999533 334
Q ss_pred CCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
..|+...+..+...+.+.|+.++|.+++++-.
T Consensus 366 ~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 366 EQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999854
No 21
>PF13041 PPR_2: PPR repeat family
Probab=99.50 E-value=4.4e-14 Score=81.73 Aligned_cols=49 Identities=43% Similarity=0.725 Sum_probs=45.1
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 158 (325)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||++++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999998777777777765
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=4e-10 Score=101.52 Aligned_cols=294 Identities=13% Similarity=-0.028 Sum_probs=177.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHH---------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV-ITFNTLA---------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~l~---------~~a~~ 70 (325)
.|+++.|+..|+..... .|+...|..+..+|.+.|++++|++.++...+. .|+. ..|..+- +.|+.
T Consensus 140 ~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 48899999999998876 577888999999999999999999999998875 4443 2333322 55555
Q ss_pred HHHHHHHhcCCc--------------------------cCccHHHHHHHHHHHHhcCc----h----hhcCCCCCh-hhH
Q 048780 71 LFEEMVNEFGVI--------------------------CKPDVVTCTNIIDGLCKDGF----M----MDQGMRPDV-VTL 115 (325)
Q Consensus 71 ~~~~~~~~~~~~--------------------------~~~~~~~~~~ll~~~~~~~~----~----~~~~~~~~~-~~~ 115 (325)
.|.......+.. .+++...+..+ ..+..... . ......+.. ..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFV-GNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHccCCcchhhhhcccccccccccch
Confidence 554433222100 00000000000 00100000 0 000000000 000
Q ss_pred HHHHHH---HHccCcHHHHHHHHHHHHHCC-CCCCcc-cHHHHHHHHHh------------hcCCCCC-chhhHHHHHHH
Q 048780 116 NVMTDN---LSKDGKMEEANCLLEVMIQRD-VNPNTC-TYNTLMDGFAW------------WSKGCRH-DVYSYNILING 177 (325)
Q Consensus 116 ~~ll~~---~~~~g~~~~a~~~~~~m~~~g-~~~~~~-~~~~ll~~~~~------------~~~~~~~-~~~~~~~li~~ 177 (325)
..+-.. ....+++++|.+.|+...+.+ ..|+.. .+..+-..+.. ..-...| ....|..+...
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 000000 012345666666666666553 222211 11111111110 0001112 34456666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHH
Q 048780 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257 (325)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 257 (325)
+...|++++|...|++..+. .+.+..+|..+...+...|++++|...|++..+... .+...
T Consensus 375 ~~~~g~~~eA~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~ 435 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKL------------------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFS 435 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHH
Confidence 77777777777777777654 234567788889999999999999999999887652 35677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+..+...+.+.|++++|...|+...... +-+...|..+...+...|++++|.+.+++..+.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 8888889999999999999999887432 335678888899999999999999999987653
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.50 E-value=3.3e-10 Score=108.77 Aligned_cols=300 Identities=14% Similarity=0.083 Sum_probs=189.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chhHHHHH--------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPN-VITFNTLA--------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~--------~~a~~~ 71 (325)
+|++++|+..|+...... +.+...+..+...+...|++++|.+.|++..+. .|+ ...+..+. ++|...
T Consensus 364 ~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 478999999999998875 456778888999999999999999999999875 343 22332222 445555
Q ss_pred HHHHHHhcCCc-----cCccHHHHHHHHHHHHhcCchh--------hcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHH
Q 048780 72 FEEMVNEFGVI-----CKPDVVTCTNIIDGLCKDGFMM--------DQGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEV 137 (325)
Q Consensus 72 ~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~--------~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 137 (325)
++.+....... .......+..+...+...|+.. .....| +...+..+...|.+.|++++|...+++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54432211000 0001122334445555556511 112334 345666777778888888888888887
Q ss_pred HHHCCCCCCccc-HHHHHHHHHh----------h-------------------------------------------cCC
Q 048780 138 MIQRDVNPNTCT-YNTLMDGFAW----------W-------------------------------------------SKG 163 (325)
Q Consensus 138 m~~~g~~~~~~~-~~~ll~~~~~----------~-------------------------------------------~~~ 163 (325)
+.+.. |+... +..+...+.. . -..
T Consensus 521 al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 521 LAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 76542 22211 1110000000 0 001
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 048780 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243 (325)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (325)
.+.+...+..+...+.+.|++++|.+.|+...+. .+.+..++..+...+...|++++|++.+
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~------------------~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR------------------EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1223334444555555555555555555555543 3446778889999999999999999999
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----cHHhHHHHHHHHHccCChHHHHHHHHHHH-
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP----DVVTYNIMIHGFCKEGQHQKANGLLLDME- 318 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~- 318 (325)
+...+.. ..+..++..+..++...|++++|.++++.+.....-.| +...+..+...+...|++++|.+.+++..
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887653 22456677788889999999999999999874322122 23456666788899999999999999876
Q ss_pred HcCCCC
Q 048780 319 ETGLEP 324 (325)
Q Consensus 319 ~~g~~p 324 (325)
..|+.|
T Consensus 740 ~~~~~~ 745 (1157)
T PRK11447 740 ASGITP 745 (1157)
T ss_pred hcCCCC
Confidence 345655
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.50 E-value=1.5e-10 Score=104.28 Aligned_cols=253 Identities=15% Similarity=0.081 Sum_probs=178.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-hHHHHH---------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI-TFNTLA---------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~l~---------~~a~~ 70 (325)
.|+++.|+..|+.+.... +.+...+..+...+.+.|++++|...|++..+. .|+.. .+..+. +.|..
T Consensus 89 ~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHH
Confidence 488999999999998875 556778888899999999999999999999875 45533 333332 77888
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCch----------hhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 140 (325)
.++.+.... +.+...+..+ ..+...|+. ......++...+..+...+.+.|++++|.+.++.+.+
T Consensus 166 ~~~~~~~~~----P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 166 LARTQAQEV----PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHhC----CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888877654 2233333333 336666661 1111122334445566788889999999999999887
Q ss_pred CCCCCCc-ccHHHHHHHHHhhc-----------------CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048780 141 RDVNPNT-CTYNTLMDGFAWWS-----------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202 (325)
Q Consensus 141 ~g~~~~~-~~~~~ll~~~~~~~-----------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 202 (325)
.. |+. ..+..+-..+.... ...+.+...+..+...+.+.|++++|...+++..+..
T Consensus 241 ~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---- 314 (656)
T PRK15174 241 RG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH---- 314 (656)
T ss_pred cC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 63 332 23333333332211 1123356788899999999999999999999998752
Q ss_pred hhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI-ETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 203 ~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
+.+..++..+..++...|++++|.+.++.+...+ |+. ..+..+..++...|+.++|...|+..
T Consensus 315 --------------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 315 --------------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred --------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3345567778899999999999999999988754 443 33444567789999999999999987
Q ss_pred hh
Q 048780 282 MQ 283 (325)
Q Consensus 282 ~~ 283 (325)
.+
T Consensus 379 l~ 380 (656)
T PRK15174 379 IQ 380 (656)
T ss_pred HH
Confidence 63
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.46 E-value=1.2e-09 Score=99.47 Aligned_cols=95 Identities=20% Similarity=0.114 Sum_probs=72.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
+|++++|+++|+.+.+.. +-+...+..++..+...++.++|++.++++... .|+...+..+. ..|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 478899999999998876 445677778888889999999999999998765 55555542222 468888
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
++++.+.. +-+...+..++.+..+.|-
T Consensus 192 ~ekll~~~----P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 192 SSEAVRLA----PTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 88888865 4456777778888887775
No 26
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=1.4e-09 Score=87.10 Aligned_cols=265 Identities=11% Similarity=0.026 Sum_probs=192.5
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH-----------HHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----------LVALN 70 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-----------~~a~~ 70 (325)
|+|.+|+++...-.+++ +-....|-.-.++.-+.|+.+.+-..+.+..+. .+|..+-.-+. +.|..
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 88899999998877776 444566777777778889999999999888764 22322221111 34444
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCccc-
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT- 149 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~- 149 (325)
-.+++.+.. +.+.........+|.+.|++.....+...+.+.|.--+...
T Consensus 175 ~v~~ll~~~-----------------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 175 NVDQLLEMT-----------------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred HHHHHHHhC-----------------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 444444433 33556777888999999999999999999999987655433
Q ss_pred ------HHHHHHHHHh-------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 048780 150 ------YNTLMDGFAW-------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210 (325)
Q Consensus 150 ------~~~ll~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 210 (325)
+..+++-... .....+.++..-.+++.-+.+.|+.++|.++..+-.+++..|+..+
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----- 300 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----- 300 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-----
Confidence 3434433332 3334455677888899999999999999999999998877665222
Q ss_pred HHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 048780 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289 (325)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 289 (325)
.-.+.+-++.+.-.+..+.-.+ .+. ++-.+.+|-..|.+.+.|.+|...|+... + ..|
T Consensus 301 ----------------~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl-~--~~~ 359 (400)
T COG3071 301 ----------------LIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAAL-K--LRP 359 (400)
T ss_pred ----------------HHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHH-h--cCC
Confidence 3345566777777776655544 333 44788899999999999999999999766 3 389
Q ss_pred cHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048780 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
+..+|+.+..++.+.|+.++|.++.++-...-.+|
T Consensus 360 s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 360 SASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998876443343
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.42 E-value=2.9e-09 Score=96.92 Aligned_cols=287 Identities=14% Similarity=0.077 Sum_probs=192.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH------------H
Q 048780 1 MGRASGGFVLLGRILMSCFTPNM--VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------------L 66 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~------------~ 66 (325)
+|+++.|++.|+...+.. |+. ..+ .++..+...|+.++|+..+++.. .|+...+..+. +
T Consensus 47 ~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred CCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 589999999999999874 443 344 88899999999999999999998 44333333332 8
Q ss_pred HHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCch--------hhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 048780 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138 (325)
Q Consensus 67 ~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 138 (325)
.|+++|+++.+.. +-+...+..+...+...++. .-....|+...+..++..+...++..+|++.++++
T Consensus 120 ~Aiely~kaL~~d----P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 120 QALALWQSSLKKD----PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhhC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8999999999875 44566677777888887771 11234566556644544444466666699999999
Q ss_pred HHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH--------------------HcC
Q 048780 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML--------------------SEG 198 (325)
Q Consensus 139 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------------------~~g 198 (325)
.+.. |+ +...+..++.+..+.|-...|.++..+-. +.+
T Consensus 196 l~~~--P~--------------------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 196 VRLA--PT--------------------SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHhC--CC--------------------CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 8873 44 33333444444444444444443333211 000
Q ss_pred CCCChh-------------hHHHHHHHhCCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 048780 199 IRADAT-------------TYNTLFMAINNVPPD----SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261 (325)
Q Consensus 199 ~~~~~~-------------~~~~ll~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 261 (325)
..++.. .+..++......++. ..+.--.+-++...|++.++++.++.+...+.+....+-..+
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 000000 000000011112222 122334567788899999999999999998877667788999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCC----CCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 262 IDGLCKIGRLKIAWDIFHMLMQNPG----LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.++|...+.+++|..+++.+....+ ..++......|..+|...+++++|..+++.+.+.
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9999999999999999999864432 2334444678999999999999999999999873
No 28
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.7e-09 Score=84.42 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=77.4
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------------H
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------------L 66 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------------~ 66 (325)
.+.++|+++|-.|.+.. +-+..+--+|-+.|.+.|..++|.++.+.+.+ .||..--..++ +
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 57899999999999854 45666777899999999999999999999987 34443322222 6
Q ss_pred HHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 048780 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144 (325)
Q Consensus 67 ~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 144 (325)
.|..+|..+...+. .-......|+..|-...+|++|.++-+++.+.+-.
T Consensus 125 RAE~~f~~L~de~e-----------------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 125 RAEDIFNQLVDEGE-----------------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHHHhcchh-----------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 67777777665441 11223455677777777777777777777666443
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.39 E-value=1.1e-08 Score=95.06 Aligned_cols=203 Identities=13% Similarity=-0.018 Sum_probs=145.5
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH------HHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------LVALNLFEE 74 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~------~~a~~~~~~ 74 (325)
.|++++|+..|+...+.. +-+..++..|...|.+.|++++|+..+++..+. .|+...|..++ ..|..++++
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i~~~~kA~~~ye~ 133 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAIPVEVKSVTTVEE 133 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHhccChhHHHHHHH
Confidence 389999999999999886 456888999999999999999999999999976 56555555544 888999999
Q ss_pred HHHhcCCccCccHHHHHHHHHH--------HHhcCc----hhhcCCCCC--hhhHHHH-HHHHHccCcHHHHHHHHHHHH
Q 048780 75 MVNEFGVICKPDVVTCTNIIDG--------LCKDGF----MMDQGMRPD--VVTLNVM-TDNLSKDGKMEEANCLLEVMI 139 (325)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~----~~~~~~~~~--~~~~~~l-l~~~~~~g~~~~a~~~~~~m~ 139 (325)
+.+.. +-+..++..+... |.+.+. +......|+ ..+.... ...|.+.|++++|++++.++.
T Consensus 134 l~~~~----P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 134 LLAQQ----KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHhC----CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99875 3334444444443 444443 223333443 4444444 899999999999999999999
Q ss_pred HCCCCCCcccHHHHHHHHHh----------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHH
Q 048780 140 QRDVNPNTCTYNTLMDGFAW----------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR-ADATTYNT 208 (325)
Q Consensus 140 ~~g~~~~~~~~~~ll~~~~~----------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ 208 (325)
+.+.... .-...+-.+|.. .....+-+...+.++...|.+.|+.++|.++++++...-.. |...++..
T Consensus 210 k~~pl~~-~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 210 QQNTLSA-AERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred hcCCCCH-HHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 9864432 222223223332 22233457888999999999999999999999998765333 55556555
Q ss_pred HHH
Q 048780 209 LFM 211 (325)
Q Consensus 209 ll~ 211 (325)
.+.
T Consensus 289 ~l~ 291 (987)
T PRK09782 289 LLS 291 (987)
T ss_pred HHH
Confidence 543
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.39 E-value=1.4e-08 Score=93.58 Aligned_cols=95 Identities=7% Similarity=-0.182 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc-HHhHHHHHHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD-VVTYNIMIHG 300 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 300 (325)
.+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.++..... .|+ ...+......
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l---~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL---EPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHH
Confidence 55677888999999999999999997764 336788999999999999999999999998733 454 5666677778
Q ss_pred HHccCChHHHHHHHHHHHHc
Q 048780 301 FCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~~ 320 (325)
+.+.|++++|..+++++.+.
T Consensus 437 al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHh
Confidence 89999999999999999874
No 31
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.38 E-value=1.3e-10 Score=98.01 Aligned_cols=284 Identities=14% Similarity=0.117 Sum_probs=160.7
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHH----HH------HHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT----LA------LVALNL 71 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----l~------~~a~~~ 71 (325)
|++++|+.+++.+.+.. +..+..|--+..++...|+.+.|.+.|.+..+. .|+.....+ ++ .+|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 67888888888888774 446678888888888888888888888887764 444332221 22 455555
Q ss_pred HHHHHHhcCCccCcc-HHHHHHHHHHHHhcCc--------hhhcCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 72 FEEMVNEFGVICKPD-VVTCTNIIDGLCKDGF--------MMDQGMRPD-VVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~--------~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
+-+..+. .|. ...|+.|--.+...|+ -+.-.+.|+ ...|-.|-..|...+.++.|+..|......
T Consensus 207 YlkAi~~-----qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIET-----QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHhh-----CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 5555442 232 4556666666666666 112234443 345666777777777777777777665543
Q ss_pred CCCCCccc--------------HHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 048780 142 DVNPNTCT--------------YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207 (325)
Q Consensus 142 g~~~~~~~--------------~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 207 (325)
.|+... ....|..|.+.-...+.-...|+.|..++-..|++.+|.+.|+.....
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------- 349 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------- 349 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh----------
Confidence 333111 111222222211111122345666666666666666666666655543
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048780 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286 (325)
Q Consensus 208 ~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 286 (325)
.+......+.|...|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|...+++.. .
T Consensus 350 --------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---r 416 (966)
T KOG4626|consen 350 --------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---R 416 (966)
T ss_pred --------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---h
Confidence 2233455566666666666666666666554432 222 2345666666666666666666666544 2
Q ss_pred CCCc-HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 287 LTPD-VVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 287 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
++|+ ...|+.+-..|...|+.+.|.+.+.+..
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 3444 2455555566666666666666665544
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=2.8e-09 Score=83.85 Aligned_cols=203 Identities=15% Similarity=0.054 Sum_probs=159.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcC
Q 048780 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101 (325)
Q Consensus 22 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 101 (325)
....+..+...+...|++++|.+.|++..+.. |
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------------------------------p---------------- 62 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-------------------------------P---------------- 62 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------c----------------
Confidence 45678888899999999999999999886531 1
Q ss_pred chhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhc
Q 048780 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181 (325)
Q Consensus 102 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (325)
.+...+..+...+...|++++|.+.++...+.. |+ +...+..+...+...
T Consensus 63 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~--------------------~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 63 --------DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PN--------------------NGDVLNNYGTFLCQQ 112 (234)
T ss_pred --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC--------------------CHHHHHHHHHHHHHc
Confidence 123455667778889999999999999988763 22 445677788889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 048780 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261 (325)
Q Consensus 182 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 261 (325)
|++++|.+.+++..+.... +.....+..+...+...|++++|.+.+++...... .+...+..+
T Consensus 113 g~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 175 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLY----------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLEL 175 (234)
T ss_pred ccHHHHHHHHHHHHhcccc----------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHH
Confidence 9999999999998864211 12334566678889999999999999999877642 256788889
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
...+...|++++|...++..... .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999999998743 2446677778888889999999999998887654
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=1.5e-11 Score=99.68 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=102.2
Q ss_pred CCCcchHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH--------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~--------~~a~~~ 71 (325)
.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+.. +...+..++ +.|.++
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~~~~~A~~~ 99 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDGDPEEALKL 99 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 488999999996654443 3456667777777888899999999999999876532 344444443 667777
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCc-----------hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 140 (325)
++..-+. .++...+..++..+.+.++ ......+.+...|..+...+.+.|+.++|++.+++..+
T Consensus 100 ~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 100 AEKAYER-----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccc-----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665443 2456667778888888777 12223456788899999999999999999999999988
Q ss_pred CCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCCh
Q 048780 141 RDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220 (325)
Q Consensus 141 ~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 220 (325)
. .|+ |....+.++..+...|+.+++.++++...+.. +.|.
T Consensus 175 ~--~P~--------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------------------~~~~ 214 (280)
T PF13429_consen 175 L--DPD--------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------------------PDDP 214 (280)
T ss_dssp H---TT---------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------------HTSC
T ss_pred c--CCC--------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------------------cCHH
Confidence 7 343 67788889999999999999999999988762 3456
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..+..+..+|...|+.++|+..|+...+.. +.|+.....+..++...|+.++|.++.....
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 677888999999999999999999988765 3388889999999999999999999987654
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.35 E-value=4e-09 Score=97.08 Aligned_cols=251 Identities=10% Similarity=0.058 Sum_probs=150.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHH---------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV-ITFNTLA---------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~l~---------~~a~~ 70 (325)
+|+.++|++++....... +.+...+..+...+.+.|++++|.++|++..+. .|+. ..+..+. +.|+.
T Consensus 28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 477788888888877532 445556777888888888888888888887664 3332 2222221 66666
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccH
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 150 (325)
.++++.+.. +.+.. +..+...+...|+.++|+..++++.+. .|+
T Consensus 105 ~l~~~l~~~-----------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~---- 148 (765)
T PRK10049 105 KAKQLVSGA-----------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ---- 148 (765)
T ss_pred HHHHHHHhC-----------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC----
Confidence 666666543 12233 555555566666666666666666654 232
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCH----------------------------------------------
Q 048780 151 NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV---------------------------------------------- 184 (325)
Q Consensus 151 ~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---------------------------------------------- 184 (325)
+...+..+..++...|..
T Consensus 149 ----------------~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 149 ----------------TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred ----------------CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 222222233333333333
Q ss_pred HHHHHHHHHHHHc-CCCCChhhHHHHHHHhCCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-cCHHHHHHH
Q 048780 185 EDAVSLCREMLSE-GIRADATTYNTLFMAINNVPPD-SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV-LTIETCNCL 261 (325)
Q Consensus 185 ~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l 261 (325)
++|++.++.+.+. ...|+. .+. .......+.++...|++++|+..|+.+.+.+.. |+. .-..+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~-------------~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l 278 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDA-------------TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV 278 (765)
T ss_pred HHHHHHHHHHHhhcccCCcc-------------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH
Confidence 4455555555432 111110 000 011111134456779999999999999887632 332 22225
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCC--cHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTP--DVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..+|...|++++|...|+.+.......+ .......+..++...|++++|.++++.+.+.
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 6789999999999999999873322211 1345667777899999999999999998865
No 35
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.34 E-value=7.2e-10 Score=93.70 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=132.5
Q ss_pred CCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHH
Q 048780 107 GMRPD-VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185 (325)
Q Consensus 107 ~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (325)
...|+ ...|+.|..++-..|++.+|.+.|...... .|+ .....+.|-..|...|.++
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~--------------------hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPN--------------------HADAMNNLGNIYREQGKIE 371 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCc--------------------cHHHHHHHHHHHHHhccch
Confidence 34554 457888888888888888888888777654 221 4557788889999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC-HHHHHHHHHH
Q 048780 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-IETCNCLIDG 264 (325)
Q Consensus 186 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~ 264 (325)
+|..+|....+- .+.-...++.|...|-..|++++|+..+++..+. +|+ ...|+.+-..
T Consensus 372 ~A~~ly~~al~v------------------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 372 EATRLYLKALEV------------------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHhh------------------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchH
Confidence 999999888764 2233566888889999999999999999888764 565 5688888888
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCc-HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 048780 265 LCKIGRLKIAWDIFHMLMQNPGLTPD-VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 325 (325)
|-..|+.+.|...+.+.. . +.|. ...++.|...|...|++.+|.+-+++..+ ++||
T Consensus 432 ~ke~g~v~~A~q~y~rAI-~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAI-Q--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHhhhHHHHHHHHHHHH-h--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 999999999999888776 2 3444 46778888899999999999998888765 3454
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.8e-09 Score=84.95 Aligned_cols=187 Identities=17% Similarity=0.069 Sum_probs=148.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|.+.++...+.. +.+...+..+...+...|++++|.+.|++..+..
T Consensus 44 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------------- 95 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------------------- 95 (234)
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------------
Confidence 478999999999988764 4567788899999999999999999999887542
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
+.+...+..+...+...|++++|.+.++........+.
T Consensus 96 ----------------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------- 133 (234)
T TIGR02521 96 ----------------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-------------- 133 (234)
T ss_pred ----------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc--------------
Confidence 11223455566778889999999999999886532221
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
....+..+..++...|++++|.+.+.+..+.. +.+...+..+...+...|++++|.
T Consensus 134 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 134 ------PARSLENAGLCALKAGDFDKAEKYLTRALQID------------------PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred ------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------cCChHHHHHHHHHHHHcCCHHHHH
Confidence 34456667888999999999999999988752 234556777889999999999999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..+++..+. ...+...+..+...+...|+.+.|..+++.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999998776 34467777788888999999999999988775
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.33 E-value=1.1e-08 Score=90.06 Aligned_cols=290 Identities=15% Similarity=0.132 Sum_probs=189.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
.|++++|.+++.++.+.. +.+...|.+|...|-+.|+.++++..+-..-... +.|...|..+- ..|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 389999999999999886 6788999999999999999999998775554432 44556666664 666777
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCc----------hhhcCCCCChhhH----HHHHHHHHccCcHHHHHHHHHH
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTL----NVMTDNLSKDGKMEEANCLLEV 137 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~~~~~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~ 137 (325)
|.+..+.. +++....-.-...|-+.|+ +.....+.|..-+ -.++..+...++-+.|.+.++.
T Consensus 230 y~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 230 YSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777654 3333333333344444444 0001111111111 2223333334444555555544
Q ss_pred HHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-----------
Q 048780 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY----------- 206 (325)
Q Consensus 138 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----------- 206 (325)
.... .+...+...++.++..|.+...++.|......+......+|..-+
T Consensus 306 ~~s~--------------------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 306 ALSK--------------------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHhh--------------------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 4432 122235566778888888888888888888887762222222211
Q ss_pred ----------------HHHHH-----------------HhCC--CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 048780 207 ----------------NTLFM-----------------AINN--VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251 (325)
Q Consensus 207 ----------------~~ll~-----------------~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 251 (325)
...+- .... ...+...|.-+..++...|++.+|+.+|..+.....
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 11110 1112 233556788889999999999999999999987755
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 252 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
.-+...|--+.++|-..|..+.|...++........ +...--+|...+-+.|+.++|.+.++.+.
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~--~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD--NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 557788999999999999999999999988754322 33344477778889999999999998864
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.31 E-value=5.9e-09 Score=96.89 Aligned_cols=241 Identities=13% Similarity=0.007 Sum_probs=141.3
Q ss_pred CCcchHHHHHHHHHhc-CC-CC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHH
Q 048780 2 GRASGGFVLLGRILMS-CF-TP--NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVA 68 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~-~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a 68 (325)
|+..++....+..... +. ++ +...|..+..++.. +++++|...|.+.... .|+......+. +.|
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHH
Confidence 4454444444444333 11 34 66778888877776 8888999988887765 35533211111 555
Q ss_pred HHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcc
Q 048780 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 148 (325)
...|+.+... +|+...+..+...+.+.|++++|.+.++...+.. |+
T Consensus 529 i~~~rka~~~------------------------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~-- 574 (987)
T PRK09782 529 LAAWQKISLH------------------------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LG-- 574 (987)
T ss_pred HHHHHHHhcc------------------------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc--
Confidence 5555554332 2222334445556667777777777777766542 22
Q ss_pred cHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHH
Q 048780 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228 (325)
Q Consensus 149 ~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~ 228 (325)
+...+..+.....+.|++++|...+++..+. .|+...|..+..
T Consensus 575 ------------------~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-------------------~P~~~a~~~LA~ 617 (987)
T PRK09782 575 ------------------DNALYWWLHAQRYIPGQPELALNDLTRSLNI-------------------APSANAYVARAT 617 (987)
T ss_pred ------------------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-------------------CCCHHHHHHHHH
Confidence 1122222333334457777777777776653 334455566666
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChH
Q 048780 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308 (325)
Q Consensus 229 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (325)
++.+.|+.++|+..+++...... -+...++.+-.++...|++++|...++...+.. +-+...+..+-.++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 77777777777777777666542 245566666666777777777777777665321 224556666666777777777
Q ss_pred HHHHHHHHHHH
Q 048780 309 KANGLLLDMEE 319 (325)
Q Consensus 309 ~a~~~~~~m~~ 319 (325)
+|...+++..+
T Consensus 695 eA~~~l~~Al~ 705 (987)
T PRK09782 695 ATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=2.7e-09 Score=90.66 Aligned_cols=230 Identities=16% Similarity=0.074 Sum_probs=166.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH----------HHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFN--SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----------LVA 68 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~----------~~a 68 (325)
+|+++.|.+.++.+.+. .|+...+. .....+...|+++.|...++++.+. .|+......++ +.+
T Consensus 131 ~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 131 RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHH
Confidence 48889999999998875 45554333 3366788899999999999998876 35544333332 778
Q ss_pred HHHHHHHHHhcCCccCccH-------HHHHHHHHHHHhcCc---h----h--hcCCCCChhhHHHHHHHHHccCcHHHHH
Q 048780 69 LNLFEEMVNEFGVICKPDV-------VTCTNIIDGLCKDGF---M----M--DQGMRPDVVTLNVMTDNLSKDGKMEEAN 132 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~---~----~--~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 132 (325)
.+++..+.+.. ..++. ..|..++.......+ . . ....+.+......+...+...|+.++|.
T Consensus 207 ~~~l~~l~k~~---~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 207 LDILPSMAKAH---VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888776 22211 122222222222211 0 0 0123447778888999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048780 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212 (325)
Q Consensus 133 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (325)
+++++..+. .|+ . --.++.+.+..++.+++.+..+...+.
T Consensus 284 ~~L~~~l~~--~~~---------------------~--~l~~l~~~l~~~~~~~al~~~e~~lk~--------------- 323 (398)
T PRK10747 284 QIILDGLKR--QYD---------------------E--RLVLLIPRLKTNNPEQLEKVLRQQIKQ--------------- 323 (398)
T ss_pred HHHHHHHhc--CCC---------------------H--HHHHHHhhccCCChHHHHHHHHHHHhh---------------
Confidence 999988874 222 1 112344445669999999999999876
Q ss_pred hCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.+.|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|..++++-.
T Consensus 324 ---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 324 ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677888899999999999999999999875 5899999999999999999999999998754
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.3e-09 Score=91.28 Aligned_cols=267 Identities=12% Similarity=0.030 Sum_probs=175.4
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchhHHHHH-----HHHHHHHHHH
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC--CDPNVITFNTLA-----LVALNLFEEM 75 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l~-----~~a~~~~~~~ 75 (325)
+.++|..+|+.+..+- .-+..+...+-.+|-..+++++|.++|+.+.+.. .--+..+|.+.+ +-++..+-+-
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 3578899999966553 3444777788999999999999999999998752 112556777776 3344433332
Q ss_pred HHhcCCccCccHHHHHHHHHHHHhcCc------hhhc--CCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 048780 76 VNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQ--GMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146 (325)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~~--~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 146 (325)
.-.. -+-.+.+|-++-.+|.-.++ ..+. .+.| ...+|+.+-.-+....++|.|...|+...
T Consensus 413 Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al------- 482 (638)
T KOG1126|consen 413 LIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL------- 482 (638)
T ss_pred HHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-------
Confidence 2222 23344555555555555444 1111 2222 23444444444555555555555555433
Q ss_pred cccHHHHHHHHHhhcCCCCCchhhHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhH
Q 048780 147 TCTYNTLMDGFAWWSKGCRHDVYSYNI---LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223 (325)
Q Consensus 147 ~~~~~~ll~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~ 223 (325)
..+...||+ +...|.+.++++.|+-.|+...+-+ +.+....
T Consensus 483 ------------------~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------------------P~nsvi~ 526 (638)
T KOG1126|consen 483 ------------------GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN------------------PSNSVIL 526 (638)
T ss_pred ------------------cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC------------------ccchhHH
Confidence 335555554 5678999999999999999887653 3345555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc-HHhHHHHHHHHH
Q 048780 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD-VVTYNIMIHGFC 302 (325)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 302 (325)
..+...+-+.|+.|+|++++++....+.+ |+-.---....+...+++++|+..++++++ +.|+ ...|..+...|.
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYK 602 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHH
Confidence 66677888999999999999998877644 444444445556678999999999999873 2454 456667778999
Q ss_pred ccCChHHHHHHHHHHHHc
Q 048780 303 KEGQHQKANGLLLDMEET 320 (325)
Q Consensus 303 ~~g~~~~a~~~~~~m~~~ 320 (325)
+.|+.+.|+.-|--+.+.
T Consensus 603 ~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHccchHHHHhhHHHhcC
Confidence 999999998777666543
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=1.3e-10 Score=101.49 Aligned_cols=218 Identities=15% Similarity=0.151 Sum_probs=154.4
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---hcCCCCCchhhHHHHHHHHH
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---WSKGCRHDVYSYNILINGYC 179 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~~~~~~~~~~~li~~~~ 179 (325)
++..|+.|+..||.++|..||..|+++.|- +|.-|.-.....+...|+.++.+... .++.-.|...+|..|..+|.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYR 94 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHH
Confidence 566799999999999999999999999999 99999999899999999999998776 34445778889999999999
Q ss_pred hcCCHHH---HHHHHHHHH----HcCCCCChhhHHHHHHHhCCCCCChHh----------HHHHHHHHHH------cC--
Q 048780 180 KDRNVED---AVSLCREML----SEGIRADATTYNTLFMAINNVPPDSHV----------YTTYIDGLYK------NG-- 234 (325)
Q Consensus 180 ~~g~~~~---a~~~~~~m~----~~g~~~~~~~~~~ll~~~~~~~~~~~~----------~~~l~~~~~~------~~-- 234 (325)
+.|++.. +.+.+..+. ..|+..-...+-..+..+.+.-||... |..++..... .+
T Consensus 95 ~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~ 174 (1088)
T KOG4318|consen 95 IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPF 174 (1088)
T ss_pred hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchH
Confidence 9999655 333222222 233333333333333333333343321 2222222211 00
Q ss_pred ---------CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 235 ---------FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 235 ---------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
...-.+++....+...-.|+..+|..++.+-.-+|+.+.|..++..|+ +.|+..+..-|..|+-+ .+
T Consensus 175 ~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk-e~gfpir~HyFwpLl~g---~~ 250 (1088)
T KOG4318|consen 175 QVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK-EKGFPIRAHYFWPLLLG---IN 250 (1088)
T ss_pred HHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH-HcCCCcccccchhhhhc---Cc
Confidence 011122222222222115899999999999999999999999999999 88999898888888876 78
Q ss_pred ChHHHHHHHHHHHHcCCCCC
Q 048780 306 QHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~pd 325 (325)
+...+..+++-|.+.|+.||
T Consensus 251 ~~q~~e~vlrgmqe~gv~p~ 270 (1088)
T KOG4318|consen 251 AAQVFEFVLRGMQEKGVQPG 270 (1088)
T ss_pred cchHHHHHHHHHHHhcCCCC
Confidence 88899999999999999986
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=6.9e-09 Score=92.05 Aligned_cols=63 Identities=11% Similarity=-0.034 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
..+..+-..+...|++++|...|++..+.+ |+ +...+..+..++...|++++|...++
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~--------------------~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLS--PI--------------------SADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC--------------------CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444455555555555555555442 22 33344444455555555555555555
Q ss_pred HHHHc
Q 048780 193 EMLSE 197 (325)
Q Consensus 193 ~m~~~ 197 (325)
+..+.
T Consensus 397 ~Al~l 401 (553)
T PRK12370 397 ECLKL 401 (553)
T ss_pred HHHhc
Confidence 55543
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.3e-08 Score=79.83 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHH-------------HHHHHHhhcCCCCCchhhHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT-------------LMDGFAWWSKGCRHDVYSYNILINGYC 179 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-------------ll~~~~~~~~~~~~~~~~~~~li~~~~ 179 (325)
.|+..+.+-|+-.++.++|...|+...+.+... ...|+. .+.+|.+.-.-.+.|-..|-.+-++|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 455555666666666666666666666543211 111111 122222222334457777788888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 048780 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259 (325)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 259 (325)
-.+.+.-|+-.|++..+- .+.|...|.+|-.+|.+.++.++|++-|......|- .+...+.
T Consensus 410 im~Mh~YaLyYfqkA~~~------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~ 470 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALEL------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALV 470 (559)
T ss_pred HhcchHHHHHHHHHHHhc------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHH
Confidence 888888888888777664 244788899999999999999999999988877663 3667888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh---CCCC-CC-cHHhHHHHHHHHHccCChHHHHHHHH
Q 048780 260 CLIDGLCKIGRLKIAWDIFHMLMQ---NPGL-TP-DVVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~~~~---~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
.|...|-+.++.++|...|++..+ ..|. .| ......-|..-+.+.+++++|..+..
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 899999999999998888876653 1222 22 12222334455666677766655443
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=5.6e-08 Score=83.12 Aligned_cols=238 Identities=13% Similarity=0.048 Sum_probs=156.9
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-hHHHHH---------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI-TFNTLA---------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~l~---------~~a~~ 70 (325)
+|+.+.|.+.++...+....++...--.....+...|+++.|.+.++.+.+.. |+.. ....+. +.+.+
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDD 208 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 47888888888887765322222334445777788889999999988888763 4433 222222 67778
Q ss_pred HHHHHHHhcCCccCccHHH-------HHHHHHHHHh-cCc-----hhhc---CCCCChhhHHHHHHHHHccCcHHHHHHH
Q 048780 71 LFEEMVNEFGVICKPDVVT-------CTNIIDGLCK-DGF-----MMDQ---GMRPDVVTLNVMTDNLSKDGKMEEANCL 134 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~-~~~-----~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 134 (325)
.+..+.+.+ ..+.... +..++..-.. .+. .... ..+.+...+..+...+...|+.++|.++
T Consensus 209 ~l~~l~k~~---~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 209 IIDNMAKAG---LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred HHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 888888765 2222111 1111111011 110 1111 1123778889999999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhC
Q 048780 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214 (325)
Q Consensus 135 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (325)
+++..+.. ||.. ...............++.+.+.+.++...+.
T Consensus 286 l~~~l~~~--pd~~------------------~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~----------------- 328 (409)
T TIGR00540 286 IFDGLKKL--GDDR------------------AISLPLCLPIPRLKPEDNEKLEKLIEKQAKN----------------- 328 (409)
T ss_pred HHHHHhhC--CCcc------------------cchhHHHHHhhhcCCCChHHHHHHHHHHHHh-----------------
Confidence 99998863 3311 0000111112223457788888888887765
Q ss_pred CCCCCh--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 215 NVPPDS--HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 215 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
.+.|. ....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23344 5667889999999999999999996444445689988999999999999999999999875
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.19 E-value=3.8e-08 Score=87.42 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=69.6
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
|..+-|-+--.++..|++++|.+||.+..+.... ...+|-.+..+|..+|++..|.++|+...++..-.-+......|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 3444445555566677788888888777765432 455677778888888888888888887776666666777777888
Q ss_pred HHHHccCChHHHHHHHHHHH
Q 048780 299 HGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~ 318 (325)
+++.+.|.+.+|.+.+-...
T Consensus 724 ra~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 88888888877777665443
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=2.1e-08 Score=89.02 Aligned_cols=216 Identities=14% Similarity=0.055 Sum_probs=145.6
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCc
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVI 82 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~ 82 (325)
++++|...++...+.+ +-+...+..+...+...|++++|...|++..+..
T Consensus 319 ~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~----------------------------- 368 (553)
T PRK12370 319 AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS----------------------------- 368 (553)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------------
Confidence 4567777777777665 4466677777777777788888888887776531
Q ss_pred cCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcC
Q 048780 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162 (325)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 162 (325)
| .+...+..+...+...|++++|...++...+.. |+
T Consensus 369 --P------------------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~---------------- 404 (553)
T PRK12370 369 --P------------------------ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PT---------------- 404 (553)
T ss_pred --C------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC----------------
Confidence 1 123455667778889999999999999988763 32
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCC-ChHhHHHHHHHHHHcCCHHHHHH
Q 048780 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP-DSHVYTTYIDGLYKNGFVLEAMK 241 (325)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 241 (325)
+...+..+...+...|++++|...+++..+.. +| +...+..+..++...|+.++|..
T Consensus 405 ----~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~------------------~p~~~~~~~~la~~l~~~G~~~eA~~ 462 (553)
T PRK12370 405 ----RAAAGITKLWITYYHTGIDDAIRLGDELRSQH------------------LQDNPILLSMQVMFLSLKGKHELARK 462 (553)
T ss_pred ----ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc------------------cccCHHHHHHHHHHHHhCCCHHHHHH
Confidence 22223334445666899999999999987642 22 33446667888889999999999
Q ss_pred HHHHHhhCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 242 VFSAIGNHKCVLT-IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 242 ~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.++++... .|+ ....+.+...|+..| ++|...++.+.+...-.+...-+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 463 LTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 99887654 233 344555666677777 47888777776444434444444 33345556777766666 777765
Q ss_pred C
Q 048780 321 G 321 (325)
Q Consensus 321 g 321 (325)
|
T Consensus 536 ~ 536 (553)
T PRK12370 536 D 536 (553)
T ss_pred c
Confidence 4
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=6.8e-07 Score=73.83 Aligned_cols=310 Identities=12% Similarity=0.065 Sum_probs=209.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH--------HHHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALNLF 72 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~--------~~a~~~~ 72 (325)
++++..|.++|+..+.-. ..+...|-..+..=.+++++..|..+++.....=-..|..=|--+. ..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 356788999999988766 5778888888888889999999999999887642222222222221 7788888
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCchhh--------cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 144 (325)
+...+ ..|+...|++.|..=.+-..... --+.|+..+|-.....=.+.|.+..|.++|+...+. .
T Consensus 165 erW~~-----w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 165 ERWME-----WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHc-----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 88877 67999999998887776665222 124688888887777777888888888888876654 2
Q ss_pred CCcccHHHHHHHHHh-------------------------------------------------------------hcCC
Q 048780 145 PNTCTYNTLMDGFAW-------------------------------------------------------------WSKG 163 (325)
Q Consensus 145 ~~~~~~~~ll~~~~~-------------------------------------------------------------~~~~ 163 (325)
.|...-..++.+++. .-..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 233333444455543 1123
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHH------------------------------
Q 048780 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT--TYNTLFM------------------------------ 211 (325)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~------------------------------ 211 (325)
.+.|-.+|--.+..--..|+.+...++|+..... ++|-.. -|...+.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 3345556666667666778888888888777653 333111 1111111
Q ss_pred --------------------------------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 048780 212 --------------------------------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259 (325)
Q Consensus 212 --------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 259 (325)
...|.-|-..+|-..|..-.+.+.+|.+..+++...+.+.. |..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHH
Confidence 22345566666777777777788888888888888777643 677777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.....=...|+.+.|..+|.-......+......|-+.|.-=...|..++|..+++++.+.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 7777777788888888888887754434444555666666556778899999999888754
No 48
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=1.5e-07 Score=81.42 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=184.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHH------------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA------------ 68 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a------------ 68 (325)
+|++++|++.++.-... +.............+.+.|+.++|..+|..+.+. .|+...|-..+..+
T Consensus 17 ~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred CCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccccH
Confidence 58899999999875544 3455667788888999999999999999999987 67888777666333
Q ss_pred ---HHHHHHHHHhcCCccCc--------cHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 048780 69 ---LNLFEEMVNEFGVICKP--------DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137 (325)
Q Consensus 69 ---~~~~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 137 (325)
.++++++.........| +...|...+..|.+. ....|++ .+|+.|-..|.......-..+++..
T Consensus 94 ~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~--~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 94 EKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRP--QLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred HHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHH--HHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHH
Confidence 34555554443111001 112222233333221 1223333 3445555555544444555555555
Q ss_pred HHHCC----CCCCcccHHHHHHHHHhhcCCCCCchhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048780 138 MIQRD----VNPNTCTYNTLMDGFAWWSKGCRHDVYSY--NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211 (325)
Q Consensus 138 m~~~g----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 211 (325)
..... -.+... ......|+...| .-+.+.|-..|++++|++++++..+.. |
T Consensus 169 ~~~~l~~~~~~~~~~-----------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--P---------- 225 (517)
T PF12569_consen 169 YVNSLESNGSFSNGD-----------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--P---------- 225 (517)
T ss_pred HHHhhcccCCCCCcc-----------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C----------
Confidence 44321 110000 001223444344 556778889999999999999998862 2
Q ss_pred HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcH
Q 048780 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291 (325)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 291 (325)
..+..|..-.+.+-+.|++.+|.+.++..+..+.. |..+-+-....+.++|++++|.+++.... ..+..|-.
T Consensus 226 ------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~~~~~~~ 297 (517)
T PF12569_consen 226 ------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFT-REDVDPLS 297 (517)
T ss_pred ------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CCCCCccc
Confidence 23566777789999999999999999999988755 88888889999999999999999999887 44444432
Q ss_pred H------hH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048780 292 V------TY--NIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 292 ~------~~--~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
. .| .....+|.+.|++..|++-|..+.+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 22 3335689999999999888776653
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-07 Score=75.41 Aligned_cols=101 Identities=13% Similarity=0.013 Sum_probs=84.3
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
.+.|-..|-.|-++|.-.+...-|+-.|++..... +-|...|.+|-.+|.+.++.++|.+.|.... ..| ..+...+.
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai-~~~-dte~~~l~ 470 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI-LLG-DTEGSALV 470 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH-hcc-ccchHHHH
Confidence 46678889999999999999999999998887654 3378899999999999999999999999887 333 33667888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 048780 296 IMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.|.+.|-+.++.++|.+.++...+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999988887654
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=4e-07 Score=71.49 Aligned_cols=169 Identities=11% Similarity=0.102 Sum_probs=120.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
--|-.-|.+.|-++.|+.+|..+.+.|.. -......|+..|-...+|++|+++-+++.
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~ef----------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEF----------------------AEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhh----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45667788899999999999998876432 24466778899999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 048780 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275 (325)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 275 (325)
+.+-.+...-.. ..|..|...+....+.+.|...+.+....+.+ ....--.+-+.+...|++++|.
T Consensus 169 k~~~q~~~~eIA-------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV 234 (389)
T COG2956 169 KLGGQTYRVEIA-------------QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAV 234 (389)
T ss_pred HcCCccchhHHH-------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHH
Confidence 876444322221 23556666666677788888888777665422 4444455666777788888888
Q ss_pred HHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048780 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
+.++... ..+..--..+...|..+|...|+.++...++..+.+..
T Consensus 235 ~~~e~v~-eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 235 EALERVL-EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHH-HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888776 44333345566777888888888888888887776643
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=3.8e-07 Score=74.93 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH-hcCChHHHHHHHHHHhhCCCCCCcHHhH
Q 048780 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC-KIGRLKIAWDIFHMLMQNPGLTPDVVTY 294 (325)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 294 (325)
++-+..+..-|..-|.....++++++.|+...- +.|+..-|..++..|. +.|++.+|.++++.+- ..++-|..+.
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h--rkfpedldcl 697 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH--RKFPEDLDCL 697 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCccchHHH
Confidence 455667777778888999999999999987643 5799999998887665 6799999999999875 4457788999
Q ss_pred HHHHHHHHccCC
Q 048780 295 NIMIHGFCKEGQ 306 (325)
Q Consensus 295 ~~li~~~~~~g~ 306 (325)
..|++.+...|.
T Consensus 698 kflvri~~dlgl 709 (840)
T KOG2003|consen 698 KFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhccccc
Confidence 999999988875
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=1.2e-07 Score=80.97 Aligned_cols=236 Identities=14% Similarity=0.033 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHH-----------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc--hh
Q 048780 38 RILEAARLFKKLNVFCCDPNVITFNTLA-----------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--MM 104 (325)
Q Consensus 38 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~-----------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~ 104 (325)
+.++|...|.++.+. .+|+. |...- +.|.++|+.+++.... ..-+..+|.+.+--+-+.-. +.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~-rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPY-RVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHhhHHHHHH
Confidence 568899999996654 45555 44432 8899999999876532 22356677776654433222 11
Q ss_pred h----cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh
Q 048780 105 D----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180 (325)
Q Consensus 105 ~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (325)
. ..-+-.+.+|.++-++|.-.++.+.|++.|++..+.. |+ ...+|+.+-.-+..
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~--------------------faYayTLlGhE~~~ 467 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PR--------------------FAYAYTLLGHESIA 467 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--Cc--------------------cchhhhhcCChhhh
Confidence 1 1123457899999999999999999999999887763 21 45667767777788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 260 (325)
...+|.|...|+..... | +-+-.+|--+...|.+.++++.|+-.|+...+.... +.+....
T Consensus 468 ~ee~d~a~~~fr~Al~~----~--------------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~ 528 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGV----D--------------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCH 528 (638)
T ss_pred hHHHHhHHHHHHhhhcC----C--------------chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhh
Confidence 88999999999887653 2 223345667788899999999999999999887633 6777778
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+...+-+.|+.++|+.++++.. ... .-|+.+--.-...+...+++++|++.++++++-
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~-~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAI-HLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHH-hcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 8888889999999999999987 332 224444445566677889999999999999863
No 53
>PF12854 PPR_1: PPR repeat
Probab=98.98 E-value=7.5e-10 Score=57.58 Aligned_cols=34 Identities=41% Similarity=0.805 Sum_probs=32.2
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN 50 (325)
Q Consensus 17 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 50 (325)
.|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.98 E-value=6.8e-07 Score=76.67 Aligned_cols=243 Identities=19% Similarity=0.099 Sum_probs=165.1
Q ss_pred CCCcchHHHHHHHHHhc-----C-CCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMS-----C-FTPNMV-TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~ 73 (325)
+|+++.|..+++...+. | ..|.+. ..+.+...|...+++++|..+|+++... ++
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------------------~e 272 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------------------RE 272 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------------------HH
Confidence 58899999999987654 2 123332 2344667888899999999999988642 11
Q ss_pred HHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHH
Q 048780 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153 (325)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 153 (325)
... |. ..|. -..+++.|-..|.+.|++++|...++...+.--...
T Consensus 273 ~~~---G~-~h~~------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------- 317 (508)
T KOG1840|consen 273 EVF---GE-DHPA------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------- 317 (508)
T ss_pred Hhc---CC-CCHH------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh-------
Confidence 111 10 1121 234677888889999999999988887654311100
Q ss_pred HHHHHhhcCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHhCCCCCChHhHHHHHHH
Q 048780 154 MDGFAWWSKGCRHD-VYSYNILINGYCKDRNVEDAVSLCREMLSEG---IRADATTYNTLFMAINNVPPDSHVYTTYIDG 229 (325)
Q Consensus 154 l~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~ 229 (325)
....+. ...++.+...|+..+++++|..++....+.- +.++. ..-..+++.|...
T Consensus 318 --------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~-------------~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 318 --------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN-------------VNLAKIYANLAEL 376 (508)
T ss_pred --------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc-------------hHHHHHHHHHHHH
Confidence 001112 2346667788899999999999998665421 11111 0124678999999
Q ss_pred HHHcCCHHHHHHHHHHHhhC----CC--Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHh---hCCCC-CC-cHHhHHHH
Q 048780 230 LYKNGFVLEAMKVFSAIGNH----KC--VL-TIETCNCLIDGLCKIGRLKIAWDIFHMLM---QNPGL-TP-DVVTYNIM 297 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~----~~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~-~p-~~~~~~~l 297 (325)
|...|++++|+++++..... +. .+ ....++.|-..|.+.+.+..|.++|.... ...|. .| ...+|..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 99999999999999877541 11 12 24467888899999999998988887543 12222 22 35788999
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 048780 298 IHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~ 318 (325)
...|.+.|+++.|.++.+...
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999988876
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=2e-06 Score=70.20 Aligned_cols=217 Identities=12% Similarity=-0.025 Sum_probs=127.3
Q ss_pred cchHHHHHHHHHhcC-CCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 4 ASGGFVLLGRILMSC-FTP--NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.+.++.-+.++.... ..| ....|..+...|.+.|++++|...|++..+. .
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~------------------------- 94 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--R------------------------- 94 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--C-------------------------
Confidence 455666666666432 112 2345666677777778888887777777653 1
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
+.+...|+.+-..+...|++++|.+.|+...+. .|+
T Consensus 95 ----------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~-------------- 130 (296)
T PRK11189 95 ----------------------------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT-------------- 130 (296)
T ss_pred ----------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC--------------
Confidence 123456677777788888888888888887764 343
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
+..+|..+..++...|++++|.+.|+...+.. | +..........+...++.++|.
T Consensus 131 ------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P-----------------~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 131 ------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--P-----------------NDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-----------------CCHHHHHHHHHHHccCCHHHHH
Confidence 45566777777778888888888888877642 2 1111111122233456788888
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----cHHhHHHHHHHHHccCChHHHHHHHH
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-----DVVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
+.|+...... .|+. |.. .......|+...+ ..+..+.+.....| ....|..+-..+.+.|++++|...|+
T Consensus 186 ~~l~~~~~~~-~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 186 ENLKQRYEKL-DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHHHhhC-Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8886544322 2221 221 1222234555443 24444432211111 23467777778888888888888888
Q ss_pred HHHHcC
Q 048780 316 DMEETG 321 (325)
Q Consensus 316 ~m~~~g 321 (325)
+..+.+
T Consensus 261 ~Al~~~ 266 (296)
T PRK11189 261 LALANN 266 (296)
T ss_pred HHHHhC
Confidence 776544
No 56
>PF12854 PPR_1: PPR repeat
Probab=98.97 E-value=1.1e-09 Score=57.00 Aligned_cols=32 Identities=41% Similarity=0.797 Sum_probs=14.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.2e-07 Score=74.60 Aligned_cols=54 Identities=15% Similarity=-0.078 Sum_probs=24.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
-......|++..|.+.|+-....+.. +...++.|.-.-.+.|+++.|..+++..
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 33334444555555555444443322 3334444444444455555555555443
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.96 E-value=9.7e-07 Score=71.26 Aligned_cols=214 Identities=14% Similarity=0.085 Sum_probs=147.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
+|+.+.|..-++.+.+.+ +.++.+.......|.+.|++..+..++.+|.+.|.-.|... ..+
T Consensus 166 ~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-~~l---------------- 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-ARL---------------- 227 (400)
T ss_pred CCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-HHH----------------
Confidence 366777777777777766 55667777788888888888888888888887765443321 111
Q ss_pred CccCccHHHHHHHHHHHHhcCc---------hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHH
Q 048780 81 VICKPDVVTCTNIIDGLCKDGF---------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~---------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 151 (325)
-..+|+.+++-....+. -.....+-++..-.+++.-+.+.|+.++|.++.++..+.+..|+
T Consensus 228 -----e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----- 297 (400)
T COG3071 228 -----EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----- 297 (400)
T ss_pred -----HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----
Confidence 11122222222222111 00112344556667788899999999999999999998877663
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHH
Q 048780 152 TLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231 (325)
Q Consensus 152 ~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~ 231 (325)
-...-.+.+-++.+.-.+..+.-.+. .+.++..+..|-..|.
T Consensus 298 --------------------L~~~~~~l~~~d~~~l~k~~e~~l~~------------------h~~~p~L~~tLG~L~~ 339 (400)
T COG3071 298 --------------------LCRLIPRLRPGDPEPLIKAAEKWLKQ------------------HPEDPLLLSTLGRLAL 339 (400)
T ss_pred --------------------HHHHHhhcCCCCchHHHHHHHHHHHh------------------CCCChhHHHHHHHHHH
Confidence 11222445667776666666655544 3445577888899999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 232 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
+++.+.+|...|+...+. .|+..+|+.+-.+|.+.|+..+|..++++-.
T Consensus 340 k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 340 KNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999966554 6899999999999999999999999888754
No 59
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.88 E-value=7.4e-06 Score=72.84 Aligned_cols=135 Identities=11% Similarity=0.079 Sum_probs=105.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...|.-+..+|...|++.+|+.+|..+..... -.+..+|-.+..+|...|..++|.+.++..
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-----------------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREG-----------------YQNAFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-----------------ccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566788899999999999999999999987521 223567888899999999999999999998
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-------CCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ-------NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.... +-+...-..|-..+-+.|+.++|.+.++.+.. ..+..|+...-......+...|+.++-......|..
T Consensus 476 l~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 476 LILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7654 22455666777888999999999999998641 234566677767777788889998887666666654
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=6.9e-06 Score=61.72 Aligned_cols=198 Identities=15% Similarity=0.023 Sum_probs=138.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchh
Q 048780 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM 104 (325)
Q Consensus 25 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 104 (325)
+.-.|.-.|.+.|+...|..-+++..+.. |
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-------------------------------P------------------- 66 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-------------------------------P------------------- 66 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------c-------------------
Confidence 34456677888888888888888887641 1
Q ss_pred hcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCH
Q 048780 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184 (325)
Q Consensus 105 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (325)
.+..+|..+...|-+.|+.+.|.+-|+...+. .|+ +..+.|..-.-+|..|++
T Consensus 67 -----s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~--------------------~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 67 -----SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APN--------------------NGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred -----ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCC--------------------ccchhhhhhHHHHhCCCh
Confidence 12345666777788888888888888877765 333 455566666677788888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 048780 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264 (325)
Q Consensus 185 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 264 (325)
++|...|++....-. ......+|..+.-+..+.|+.+.|.+.|++-.+.... ...+.-.+.+.
T Consensus 120 ~eA~q~F~~Al~~P~----------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~ 182 (250)
T COG3063 120 EEAMQQFERALADPA----------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARL 182 (250)
T ss_pred HHHHHHHHHHHhCCC----------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHH
Confidence 888888888776521 2223456667777777888888888888877766532 44566677777
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
..+.|++-.|...++... ..+ .++.....-.|+.-.+.|+.+.+.++=.++.
T Consensus 183 ~~~~~~y~~Ar~~~~~~~-~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 183 HYKAGDYAPARLYLERYQ-QRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHhcccchHHHHHHHHHH-hcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 778888888888888766 333 3777777777777777888777766654443
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.84 E-value=9.1e-06 Score=70.59 Aligned_cols=235 Identities=14% Similarity=0.124 Sum_probs=158.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHH-HHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCchhHHHHH---------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNS-LIKGLCTE-----GRILEAARLFKKLNVFCCDPNVITFNTLA--------- 65 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~-ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~l~--------- 65 (325)
+|+.++|..++..+.+.+ |+-..|.. +..+..-. .+.+...++|+++... -|.......+.
T Consensus 51 Lg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F 126 (517)
T PF12569_consen 51 LGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEF 126 (517)
T ss_pred cCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHH
Confidence 589999999999999986 55555544 44444222 3578888999988765 24333332221
Q ss_pred -HHHHHHHHHHHHhcCCccCccH-------------HHHHHHHHHHHhcCc----hhh----cCCCCChh--hHHHHHHH
Q 048780 66 -LVALNLFEEMVNEFGVICKPDV-------------VTCTNIIDGLCKDGF----MMD----QGMRPDVV--TLNVMTDN 121 (325)
Q Consensus 66 -~~a~~~~~~~~~~~~~~~~~~~-------------~~~~~ll~~~~~~~~----~~~----~~~~~~~~--~~~~ll~~ 121 (325)
..+...+..+...| +|+-- .+...++..|..... ... ..-.|+.. ++.-+...
T Consensus 127 ~~~~~~yl~~~l~Kg---vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh 203 (517)
T PF12569_consen 127 KERLDEYLRPQLRKG---VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH 203 (517)
T ss_pred HHHHHHHHHHHHhcC---CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence 34444555555555 33211 122222333322211 111 11244443 44666788
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 201 (325)
|-..|++++|++.++...+. .|+ .+..|..-...+-+.|++++|.+.++..++..
T Consensus 204 yd~~g~~~~Al~~Id~aI~h--tPt--------------------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--- 258 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEH--TPT--------------------LVELYMTKARILKHAGDLKEAAEAMDEARELD--- 258 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhc--CCC--------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---
Confidence 88999999999999998877 443 46678888889999999999999999998763
Q ss_pred ChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHH--------HHHHHHHHhcCChHH
Q 048780 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC--------NCLIDGLCKIGRLKI 273 (325)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------~~ll~~~~~~g~~~~ 273 (325)
.-|..+-+.....+.++|++++|.+++....+.+..|-...+ .-.-.+|.+.|++..
T Consensus 259 ---------------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 259 ---------------LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred ---------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 346777778899999999999999999999887754433222 334668889999999
Q ss_pred HHHHHHHHh
Q 048780 274 AWDIFHMLM 282 (325)
Q Consensus 274 a~~~~~~~~ 282 (325)
|++-|..+.
T Consensus 324 ALk~~~~v~ 332 (517)
T PF12569_consen 324 ALKRFHAVL 332 (517)
T ss_pred HHHHHHHHH
Confidence 888776654
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.82 E-value=1.6e-05 Score=59.82 Aligned_cols=164 Identities=18% Similarity=0.091 Sum_probs=113.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
.-|--.|...|+...|.+-+++..+. .|+ +..+|..+...|-+.|+.+.|.+.|+...
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs--------------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl 96 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPS--------------------YYLAHLVRAHYYQKLGENDLADESYRKAL 96 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc--------------------cHHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 33555777888888888888887776 232 55667777777888888888888888777
Q ss_pred HcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCChHHH
Q 048780 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL-TIETCNCLIDGLCKIGRLKIA 274 (325)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a 274 (325)
+. -+.+..+.|..-.-+|..|.+++|.+.|++......-+ -..+|..+.-+..+.|+.+.|
T Consensus 97 sl------------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 97 SL------------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred hc------------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhH
Confidence 64 23456667777777788888888888887776543222 245777777777788888888
Q ss_pred HHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048780 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 275 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
...|+...+.. +-...+...+.+-....|++..|..+++.....|
T Consensus 159 ~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 159 EEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 88887765322 1123455667777777788888887777766543
No 63
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=2.8e-06 Score=78.75 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 6 ~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
.|.+ |+.+.... +-+...|-..|....+.++.++|.+++++....
T Consensus 1443 saeD-ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t 1487 (1710)
T KOG1070|consen 1443 SAED-FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT 1487 (1710)
T ss_pred CHHH-HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh
Confidence 3444 34444332 445678999999999999999999999998753
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.3e-06 Score=68.85 Aligned_cols=220 Identities=18% Similarity=0.108 Sum_probs=161.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHH
Q 048780 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97 (325)
Q Consensus 27 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 97 (325)
+.+-++|.+.|.+.+|...|+.-.+. .|-+.||-.+- ..|+.+|.+-....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f------------------ 286 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF------------------ 286 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC------------------
Confidence 56888889999999999999888765 44444444432 44555555544432
Q ss_pred HhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 048780 98 CKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~ 177 (325)
+-|+....-+...+-..++.++|.++|+...+.. |. ++....++...
T Consensus 287 -----------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~--------------------nvEaiAcia~~ 333 (478)
T KOG1129|consen 287 -----------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH--PI--------------------NVEAIACIAVG 333 (478)
T ss_pred -----------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--Cc--------------------cceeeeeeeec
Confidence 2222233445566777799999999999887762 21 55566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC--H
Q 048780 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--I 255 (325)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~ 255 (325)
|.-.++++-|+.+|+++.+.|+. +...|+.+--+|.-.+++|-++--|.+....--.|+ .
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~------------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aa 395 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQ------------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAA 395 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCC------------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhh
Confidence 88889999999999999999854 567778888899999999999998887765433333 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.+|-.+-......||+..|.+.|+-..... .-....++.|.---.+.|++++|..+++....
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 467777777788999999999999776322 33567788887778899999999999987654
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.80 E-value=4e-05 Score=66.26 Aligned_cols=250 Identities=15% Similarity=0.105 Sum_probs=162.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
+||+..|+.++....+.. +-+...|-+-+..-.....+++|..+|.+.... .|+...|---. ++|+++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 588999999999998876 448889999999999999999999999998864 45555543332 888999
Q ss_pred HHHHHHhcCCccCcc-HHHHHHHHHHHHhcCchh------hcC--CCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 72 FEEMVNEFGVICKPD-VVTCTNIIDGLCKDGFMM------DQG--MRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~------~~~--~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
+++..+.+ |+ ...|-.+-..+-+.+++. ..| .-| .+-.|-.|.+.=-+.|.+-.|..+++...-.
T Consensus 674 lEe~lk~f-----p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 674 LEEALKSF-----PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHhC-----CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 98888865 43 344555555555555522 122 334 4456767766667788999999999988766
Q ss_pred CCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH----------
Q 048780 142 DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM---------- 211 (325)
Q Consensus 142 g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~---------- 211 (325)
+.. +...|-..|+.=.+.|+.+.|..+..+.++. ++.+...|..-|-
T Consensus 749 NPk----------------------~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 749 NPK----------------------NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred CCC----------------------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 422 7888999999999999999999998887765 2222222222221
Q ss_pred ---HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 212 ---AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 212 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
....+..|.++.-.+...+-...++++|.+.|.+..+.+.. +-.+|..+...+..+|.-+.-.+++....
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 22333444455555555555555555555555555444321 33455555555555555444444444443
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5.1e-05 Score=63.32 Aligned_cols=128 Identities=14% Similarity=0.031 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
|--+-..|....+.++..+.|+...+-+ +.+..+|..-...+.-.+++++|..=|+......
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld------------------p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD------------------PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC------------------CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6667778888888888888888887653 3344455555666666778888888888877665
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 251 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.. +...|..+--+.-+.+.++++...|+...++. +.-+..|+.....+...+++++|.+.|+...+
T Consensus 425 pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 425 PE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 32 55566666666667888888888888877443 55567788888888888888888888887654
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=7.4e-06 Score=66.15 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=96.1
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048780 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199 (325)
Q Consensus 120 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 199 (325)
..+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~---------------------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG---------------------------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT---------------------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHcCCHHHHHHHHHcc---------------------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 4556678888888777531 045556667788888888888888888887642
Q ss_pred CCChhhHHHHHHHhCCCCCChHhHHHHHHHH----HHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 048780 200 RADATTYNTLFMAINNVPPDSHVYTTYIDGL----YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275 (325)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 275 (325)
+..+...+..++ ...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.
T Consensus 162 -------------------eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 162 -------------------EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 112222233333 3334678888888887654 3567778888888888888888888
Q ss_pred HHHHHHhhCCCCCCcHHhHHHHHHHHHccCCh-HHHHHHHHHHHHc
Q 048780 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANGLLLDMEET 320 (325)
Q Consensus 276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 320 (325)
+++.+..... +-+..+...++-.....|+. +.+.+++.++...
T Consensus 222 ~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 222 ELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8888766322 33555666666666666766 6677777776643
No 68
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.69 E-value=3.6e-08 Score=52.10 Aligned_cols=33 Identities=45% Similarity=0.867 Sum_probs=28.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 048780 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 325 (325)
+|+++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.3e-05 Score=66.79 Aligned_cols=216 Identities=13% Similarity=0.045 Sum_probs=149.6
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHH--HH-------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT--LA-------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--l~-------~~a~~~~ 72 (325)
|+.-.|..-|+..+..... +...|-.+...|....+-++....|++..+.. +-|+.+|.. -+ +.|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 6777788888888877532 22337777778888899999999999888764 223344432 22 5555555
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHH
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 152 (325)
++..... | -++..|--+--+..+.+.++++...|++.++. -|+
T Consensus 418 ~Kai~L~-----p------------------------e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~------ 460 (606)
T KOG0547|consen 418 QKAISLD-----P------------------------ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPN------ 460 (606)
T ss_pred HHHhhcC-----h------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCC------
Confidence 5554432 1 13344555555666788999999999999887 333
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH
Q 048780 153 LMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232 (325)
Q Consensus 153 ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~ 232 (325)
.+..|+-....+...++++.|.+.|+...+..-.-+... +.+.+.+.-.++..- -
T Consensus 461 --------------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~----------v~~~plV~Ka~l~~q-w 515 (606)
T KOG0547|consen 461 --------------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII----------VNAAPLVHKALLVLQ-W 515 (606)
T ss_pred --------------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc----------ccchhhhhhhHhhhc-h
Confidence 577899999999999999999999998876421110000 111122222223322 3
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.+++..|+++++...+.+.+ ....|..|-..-.+.|+.++|.++|++-.
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 48999999999999887644 67789999999999999999999999865
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.68 E-value=2.6e-05 Score=63.68 Aligned_cols=193 Identities=16% Similarity=0.056 Sum_probs=128.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|+.++|+..|+...+.. +.+...|+.+...+...|++++|.+.|++..+. .
T Consensus 77 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~------------------------- 128 (296)
T PRK11189 77 LGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--D------------------------- 128 (296)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C-------------------------
Confidence 488899999999998875 457889999999999999999999999998863 1
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
|+ +...|..+...+...|++++|.+.|+...+. .|+
T Consensus 129 ----P~------------------------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~-------------- 164 (296)
T PRK11189 129 ----PT------------------------YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPN-------------- 164 (296)
T ss_pred ----CC------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC--------------
Confidence 11 2335566677788899999999999998875 332
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
+. ........+...+++++|...|.+..... .| +...+ .......|+...+
T Consensus 165 ------~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~-----------------~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 165 ------DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DK-----------------EQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred ------CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cc-----------------cccHH---HHHHHHccCCCHH-
Confidence 11 11111222345678999999997755331 11 11111 1222334555443
Q ss_pred HHHHHHhhC---CCC---cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHH
Q 048780 241 KVFSAIGNH---KCV---LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296 (325)
Q Consensus 241 ~~~~~m~~~---~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 296 (325)
+.+..+.+. ... .....|..+-..+.+.|++++|...|+... ..+ .||..-+..
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al-~~~-~~~~~e~~~ 275 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL-ANN-VYNFVEHRY 275 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CchHHHHHH
Confidence 344444321 111 123578889999999999999999999887 332 335444443
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.8e-05 Score=62.29 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHH-HHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHH-HHHH
Q 048780 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC-LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM-IHGF 301 (325)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~ 301 (325)
-.+..+++..|++.+|+++|-......++ |..+|.+ |.++|.+.+.++.|++++-.+. . ..+..+...+ .+.|
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~-t---~~e~fsLLqlIAn~C 471 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN-T---PSERFSLLQLIANDC 471 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC-C---chhHHHHHHHHHHHH
Confidence 35678889999999999999888776666 6667755 5678889999999998877654 1 2233333333 4568
Q ss_pred HccCChHHHHHHHHHHHHcCCCC
Q 048780 302 CKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
-+.+.+=-|.+.|+.+....-.|
T Consensus 472 Yk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 472 YKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHhhhHHHccCCCc
Confidence 88888877778888777654444
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.67 E-value=0.00019 Score=62.13 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=86.6
Q ss_pred CCcchHHHHHHHHHhc-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHH------HHHHHHHH
Q 048780 2 GRASGGFVLLGRILMS-CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV-ITFNTLA------LVALNLFE 73 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~l~------~~a~~~~~ 73 (325)
|++..-...|+..++. -+......|...+......|-.+-+.++++...+. .|.. .-|-..+ ++|.+.+.
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4444555555554443 22333445666666666666666666666666543 2211 1122222 44444444
Q ss_pred HHHHhcC---CccCccHHHHHHHHHHHHhcCc---------hhhcCCC--CCh--hhHHHHHHHHHccCcHHHHHHHHHH
Q 048780 74 EMVNEFG---VICKPDVVTCTNIIDGLCKDGF---------MMDQGMR--PDV--VTLNVMTDNLSKDGKMEEANCLLEV 137 (325)
Q Consensus 74 ~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~---------~~~~~~~--~~~--~~~~~ll~~~~~~g~~~~a~~~~~~ 137 (325)
....... +..+.+-..|..+-...++..+ +.+.|+. +|. ..|++|.+.|.+.|.+++|.++|++
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4432210 0123445556666555555544 2333332 342 4689999999999999999999998
Q ss_pred HHHCCCCCCcccHHHHHHHHHh
Q 048780 138 MIQRDVNPNTCTYNTLMDGFAW 159 (325)
Q Consensus 138 m~~~g~~~~~~~~~~ll~~~~~ 159 (325)
..+. ..+...|+.+..+|+.
T Consensus 274 ai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 274 AIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHh--heehhhHHHHHHHHHH
Confidence 8776 4455667777777665
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.64 E-value=1e-05 Score=65.34 Aligned_cols=239 Identities=13% Similarity=0.022 Sum_probs=144.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH------HHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------LVALNLFEE 74 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~------~~a~~~~~~ 74 (325)
.|++..++.-.+ ........+.....-+.+++...|+++.++ .++.... .|.......+. ..-...+.+
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 367777776666 333322334556667888888999877644 4444333 56655544443 112223333
Q ss_pred HHHhcCCccCccHHHHHH-HHHHHHhcCchhh----cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCccc
Q 048780 75 MVNEFGVICKPDVVTCTN-IIDGLCKDGFMMD----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149 (325)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 149 (325)
+.+.-.....++..++.. .-..+...|+... ..-..+.......+..|.+.++++.|.+.++.|.+.+ .| .+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~ 165 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SI 165 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HH
Confidence 333221112222223322 2234444555211 1111456777788899999999999999999998753 11 00
Q ss_pred HHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHH
Q 048780 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229 (325)
Q Consensus 150 ~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~ 229 (325)
. .....+.+..+.-.+.+.+|..+|+++.+. .+++..+.+.+..+
T Consensus 166 l-----------------~qLa~awv~l~~g~e~~~~A~y~f~El~~~------------------~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 166 L-----------------TQLAEAWVNLATGGEKYQDAFYIFEELSDK------------------FGSTPKLLNGLAVC 210 (290)
T ss_dssp H-----------------HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------------------S--SHHHHHHHHHH
T ss_pred H-----------------HHHHHHHHHHHhCchhHHHHHHHHHHHHhc------------------cCCCHHHHHHHHHH
Confidence 0 112333333333345799999999998765 45688999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhh
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL-KIAWDIFHMLMQ 283 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 283 (325)
+...|++++|.+++.+....+.. ++.+...++.+....|+. +.+.+++.++..
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999998776533 677888888888888987 678888888874
No 74
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.63 E-value=8.7e-08 Score=50.57 Aligned_cols=35 Identities=49% Similarity=0.825 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV 58 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 58 (325)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999974
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=5.2e-05 Score=59.86 Aligned_cols=177 Identities=15% Similarity=0.073 Sum_probs=125.2
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 109 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
......+..+...+.+.|++++|...|+++.... |+. ......+..+..++.+.|++++|.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~-----------------~~~~~a~~~la~~~~~~~~~~~A~ 90 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFS-----------------PYAEQAQLDLAYAYYKSGDYAEAI 90 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc-----------------hhHHHHHHHHHHHHHhcCCHHHHH
Confidence 3456677888888999999999999999987752 221 002245677888999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc--------CCHHHHHHHHHHHhhCCCCcCHHHH--
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN--------GFVLEAMKVFSAIGNHKCVLTIETC-- 258 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~-- 258 (325)
..++.+.+.. |+... -..++..+..++... |+.++|.+.++.+.+.... +...+
T Consensus 91 ~~~~~~l~~~--p~~~~-------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a 154 (235)
T TIGR03302 91 AAADRFIRLH--PNHPD-------------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDA 154 (235)
T ss_pred HHHHHHHHHC--cCCCc-------------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHH
Confidence 9999998753 21110 011233334444433 7788999999888765322 21111
Q ss_pred ---------------HHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 259 ---------------NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 259 ---------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..+...|.+.|++++|...++.......-.| ....+..+..++...|++++|..+++.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1345567889999999999999875432223 4578889999999999999999999988765
No 76
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.61 E-value=8.8e-08 Score=50.17 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048780 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
.+|+.++.+|++.|+++.|.+++++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
No 77
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.60 E-value=0.00018 Score=64.95 Aligned_cols=101 Identities=11% Similarity=-0.055 Sum_probs=59.6
Q ss_pred CChHhHHHHHHHHHHcC----CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh---hCCCCCCc
Q 048780 218 PDSHVYTTYIDGLYKNG----FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM---QNPGLTPD 290 (325)
Q Consensus 218 ~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p~ 290 (325)
.+..+..+|-..|+..+ ..++|..++....+.. ..|...|-.+-..+-. ++...++.++.... ...+-.+-
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCC
Confidence 34445555555555553 4566666666655543 2356666666666543 44444455554332 12333466
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+...|.+.......|++++|...|......
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 677788888888888888888888776543
No 78
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=7.5e-05 Score=61.85 Aligned_cols=298 Identities=15% Similarity=0.109 Sum_probs=173.4
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH----------HHHHHHHHHHHHhcCCc-cCcc
Q 048780 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----------LVALNLFEEMVNEFGVI-CKPD 86 (325)
Q Consensus 18 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~----------~~a~~~~~~~~~~~~~~-~~~~ 86 (325)
++..+..+...|...|.......+|+..++-+.+..+-|+......-+ ..|+++++.....-..+ -...
T Consensus 196 nldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~r 275 (840)
T KOG2003|consen 196 NLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMR 275 (840)
T ss_pred cccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhH
Confidence 334555566667777878888999999999998887777766543322 67788777666543110 0011
Q ss_pred HHHHHHHHHHHHhcCchhh--------cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccH--------
Q 048780 87 VVTCTNIIDGLCKDGFMMD--------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY-------- 150 (325)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-------- 150 (325)
..+.+.+-..+.+.|+... ....|+..+-..|+-++...|+-++..+.|..|...-..||..-|
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 2233333333444444111 123577666666777777889999999999999876544443322
Q ss_pred HHHHH-H--------HHh----------------hcCCCCCchh---------------------hHHHHHHHHHhcCCH
Q 048780 151 NTLMD-G--------FAW----------------WSKGCRHDVY---------------------SYNILINGYCKDRNV 184 (325)
Q Consensus 151 ~~ll~-~--------~~~----------------~~~~~~~~~~---------------------~~~~li~~~~~~g~~ 184 (325)
..|+. + .-+ ...-+.|+-. .=-.-...+.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 11111 1 111 0111111100 000012246678888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHH--HH---------------------------------------------------
Q 048780 185 EDAVSLCREMLSEGIRADATTYNTL--FM--------------------------------------------------- 211 (325)
Q Consensus 185 ~~a~~~~~~m~~~g~~~~~~~~~~l--l~--------------------------------------------------- 211 (325)
+.|.++++-+.+..-+.-...-+.+ +.
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 8888888877665332222111111 11
Q ss_pred --------------------------------------------------------------------HhCCCCCChHhH
Q 048780 212 --------------------------------------------------------------------AINNVPPDSHVY 223 (325)
Q Consensus 212 --------------------------------------------------------------------~~~~~~~~~~~~ 223 (325)
..+-++.|+.+.
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~il 595 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAIL 595 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHH
Confidence 122234445555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH-H
Q 048780 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF-C 302 (325)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~-~ 302 (325)
+.|...|-+.|+-.+|.+.+-+--+ -++-|..+...|...|....-++++...|++.. -+.|+..-|..++..| .
T Consensus 596 skl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHH
Confidence 5555555555555555554322211 123356666777777777777888888888754 4699999999999866 5
Q ss_pred ccCChHHHHHHHHHHHH
Q 048780 303 KEGQHQKANGLLLDMEE 319 (325)
Q Consensus 303 ~~g~~~~a~~~~~~m~~ 319 (325)
+.|++.+|++++++...
T Consensus 672 rsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 67999999999998765
No 79
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.59 E-value=1.2e-07 Score=49.60 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 56 (325)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=0.00018 Score=60.60 Aligned_cols=281 Identities=12% Similarity=-0.000 Sum_probs=153.0
Q ss_pred CCcchHHHHHHHHHhcCC-CCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHH---HHH---------H
Q 048780 2 GRASGGFVLLGRILMSCF-TPNM-VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV-ITFN---TLA---------L 66 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~---~l~---------~ 66 (325)
|+.+.+...+....+... .++. .........+...|++++|.+.+++..+. .|+. ..+. ... .
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~ 97 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRD 97 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCch
Confidence 556666666666554421 1222 22223344567789999999999998775 3433 3333 111 3
Q ss_pred HHHHHHHHHHHhcCCccCcc-HHHHHHHHHHHHhcCchhh--------cCCCC-ChhhHHHHHHHHHccCcHHHHHHHHH
Q 048780 67 VALNLFEEMVNEFGVICKPD-VVTCTNIIDGLCKDGFMMD--------QGMRP-DVVTLNVMTDNLSKDGKMEEANCLLE 136 (325)
Q Consensus 67 ~a~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~--------~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 136 (325)
.+.+.++.. .. ..|+ ......+...+...|+..+ ....| +...+..+...+...|++++|...++
T Consensus 98 ~~~~~l~~~--~~---~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 98 HVARVLPLW--AP---ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred hHHHHHhcc--Cc---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333333331 11 2333 3444455566677776221 12233 45677888888899999999999998
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCC
Q 048780 137 VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216 (325)
Q Consensus 137 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (325)
........+. ......|..+...+...|++++|..++++.......+. ....
T Consensus 173 ~~l~~~~~~~------------------~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~--~~~~-------- 224 (355)
T cd05804 173 SWRDTWDCSS------------------MLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD--PALD-------- 224 (355)
T ss_pred hhhhccCCCc------------------chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC--hHHH--------
Confidence 8776421110 00223466778889999999999999999854321000 0000
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHH--H-HHHhhC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-----
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKV--F-SAIGNH-KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL----- 287 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~--~-~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----- 287 (325)
......++.-+...|..+.+.+. + ..-... ..............++...|+.+.|..+++.+.....-
T Consensus 225 ---~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 301 (355)
T cd05804 225 ---LLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNK 301 (355)
T ss_pred ---HhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchh
Confidence 00111223333344433322222 1 111111 00111222235677788899999999999887631110
Q ss_pred CCcHHhHHHHHH--HHHccCChHHHHHHHHHHHHc
Q 048780 288 TPDVVTYNIMIH--GFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 288 ~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.....+-..++. ++...|++++|.+.+.+....
T Consensus 302 ~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 302 QPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 011122223333 456889999999998887643
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.58 E-value=2.5e-05 Score=67.26 Aligned_cols=224 Identities=18% Similarity=0.147 Sum_probs=151.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
..+...|...|...|+++.|..+++...+. +.+..+. ..|...+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~----------------------l~k~~G~-~hl~va~------------- 242 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI----------------------LEKTSGL-KHLVVAS------------- 242 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------------------HHHccCc-cCHHHHH-------------
Confidence 345666999999999999999999988753 1111110 1222211
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (325)
..+.+-..|...+++++|..+|+++...-... .....+.-..+++.|-.+|.+.|
T Consensus 243 -----------~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~--------------~G~~h~~va~~l~nLa~ly~~~G 297 (508)
T KOG1840|consen 243 -----------MLNILALVYRSLGKYDEAVNLYEEALTIREEV--------------FGEDHPAVAATLNNLAVLYYKQG 297 (508)
T ss_pred -----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh--------------cCCCCHHHHHHHHHHHHHHhccC
Confidence 22346678889999999999999987642100 00111113456777888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCCh-HhHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCCC--cC
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS-HVYTTYIDGLYKNGFVLEAMKVFSAIGN-----HKCV--LT 254 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~--~~ 254 (325)
++++|...++...+---+ + .....|.+ ..++.+...|...+.+++|..+++...+ .|.. --
T Consensus 298 Kf~EA~~~~e~Al~I~~~--------~---~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 298 KFAEAEEYCERALEIYEK--------L---LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred ChHHHHHHHHHHHHHHHH--------h---hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 999999998877642100 0 00112222 3467788889999999999999876643 1211 12
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC----C-CCCc-HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNP----G-LTPD-VVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
..+++.|-..|.+.|++++|.++++...... | ..+. ...++.|-.+|.+.+.+++|.++|.+-.
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4689999999999999999999999875321 1 1222 4567888889999999999999988754
No 82
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=0.00024 Score=60.49 Aligned_cols=257 Identities=12% Similarity=0.013 Sum_probs=163.1
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~ 72 (325)
+++++..++++.+.+.. ++....+-.-|..+...|+..+-..+=.+|.+. .+-.+.+|-++- .+|.+.|
T Consensus 258 c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred ChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 45666677777766654 556666666666777777766666666666554 133444554443 6677776
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCchh--------hcC-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM--------DQG-MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 143 (325)
.+.....+ .=...|-.+-..|+-.+.-. ... ++.....+--+---|.+.++.+.|.+.|.+... +
T Consensus 336 SKat~lD~----~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i 409 (611)
T KOG1173|consen 336 SKATTLDP----TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--I 409 (611)
T ss_pred HHHhhcCc----cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 66655331 11234444444444444300 000 111111112233356667777777777765543 3
Q ss_pred CCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHhCCCCCChH
Q 048780 144 NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG--IRADATTYNTLFMAINNVPPDSH 221 (325)
Q Consensus 144 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~ 221 (325)
-|+ |+...+-+--.....+.+.+|..+|+.-+..- +.+.. .--..
T Consensus 410 ~P~--------------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-------------~~w~p 456 (611)
T KOG1173|consen 410 APS--------------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-------------IFWEP 456 (611)
T ss_pred CCC--------------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-------------cchhH
Confidence 443 66666766666667888999999998877320 11100 11344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 301 (325)
+++.|-.+|.+.+.+++|+..++....... -+..++.++--.|...|+++.|.+.|++.. .+.|+-.+-..++..+
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHHHH
Confidence 688889999999999999999999877653 388899999999999999999999999855 5688887777777655
Q ss_pred Hc
Q 048780 302 CK 303 (325)
Q Consensus 302 ~~ 303 (325)
..
T Consensus 533 ie 534 (611)
T KOG1173|consen 533 IE 534 (611)
T ss_pred HH
Confidence 43
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.50 E-value=0.00057 Score=59.23 Aligned_cols=312 Identities=16% Similarity=0.130 Sum_probs=188.5
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHH----------------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------------- 64 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---------------- 64 (325)
.|+-++|.+....-.+.+ ..+.+.|+.+.-.+....++++|...|......+ +-|...|..+
T Consensus 54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 467788888887777654 4677888888888888889999999998887653 2222233222
Q ss_pred ----H-----------------------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCC---------
Q 048780 65 ----A-----------------------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM--------- 108 (325)
Q Consensus 65 ----~-----------------------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~--------- 108 (325)
+ ..|.++.++..+.-. -.|+...+......+-+..-+.+.|.
T Consensus 132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1 445556666555442 13555555444443333332222221
Q ss_pred --CC---Ch-hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-h-------------hcCCCCCch
Q 048780 109 --RP---DV-VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-W-------------WSKGCRHDV 168 (325)
Q Consensus 109 --~~---~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-~-------------~~~~~~~~~ 168 (325)
++ |. ..-.+-...+.+.+++++|..+|..+... .||..-|...+..+. . ......|..
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 11 11 12233345677889999999999999887 577776665444333 1 000000000
Q ss_pred hhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-----------------------------HhCCCCC
Q 048780 169 YSYNIL-INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM-----------------------------AINNVPP 218 (325)
Q Consensus 169 ~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-----------------------------~~~~~~~ 218 (325)
..-.-+ +...-...-.+..-+++..+.+.|+++--....++.. ....-+|
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 000000 0011111223445556677777787665555554433 1111256
Q ss_pred ChHhHH--HHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 219 DSHVYT--TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE-TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 219 ~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
+...|+ -++..+-+.|+++.|+..++....+ .|+.. .|..=.+.+...|+++.|..++++.. +.. .||...=.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~-elD-~aDR~INs 443 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ-ELD-TADRAINS 443 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH-hcc-chhHHHHH
Confidence 666665 4577788899999999999987754 56543 56666688999999999999999877 322 45554444
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCC
Q 048780 296 IMIHGFCKEGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~g~ 322 (325)
.-..-..++++.++|.+++..+.+.|.
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhccc
Confidence 556666788999999999988877764
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00025 Score=57.02 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhC-----------------------C-CCCChHhHHHHH
Q 048780 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN-----------------------N-VPPDSHVYTTYI 227 (325)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-----------------------~-~~~~~~~~~~l~ 227 (325)
-.|+--|.+.+++.+|..+.+++.- ..|-......+..... + ...+..-.-++.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 3455567889999999988876642 2333333333322111 1 111222234555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHH-HHHHHHccCC
Q 048780 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI-MIHGFCKEGQ 306 (325)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~ 306 (325)
.++.-..++++++-.++..+.--..-|... -.+..+++..|++.+|+++|-.+. ...++ |..+|-. |.++|.+.++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHHhcCC
Confidence 555566667777777777665433323333 346788899999999999998876 44433 5566655 4568899999
Q ss_pred hHHHHHHHHHH
Q 048780 307 HQKANGLLLDM 317 (325)
Q Consensus 307 ~~~a~~~~~~m 317 (325)
++.|..++-.+
T Consensus 444 P~lAW~~~lk~ 454 (557)
T KOG3785|consen 444 PQLAWDMMLKT 454 (557)
T ss_pred chHHHHHHHhc
Confidence 99988776544
No 85
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=0.00054 Score=57.35 Aligned_cols=261 Identities=14% Similarity=0.075 Sum_probs=161.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
.|++..|.++|+.-... .|+...|++.|..=.+...++.|..+++...-. -|+..+|-... ..+.++
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 48889999999988776 799999999999999999999999999988754 47777765554 233333
Q ss_pred HHHHHHhcCCc---------------------------------cCcc--HHHHHHHHHHHHhcCc--------h-----
Q 048780 72 FEEMVNEFGVI---------------------------------CKPD--VVTCTNIIDGLCKDGF--------M----- 103 (325)
Q Consensus 72 ~~~~~~~~~~~---------------------------------~~~~--~~~~~~ll~~~~~~~~--------~----- 103 (325)
|+...+..+.. ++.+ ...|..+...=-+-|+ .
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 33332221100 1111 2222222222222232 0
Q ss_pred ----hhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCc-c------cHHHHHHHHHh-------------
Q 048780 104 ----MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT-C------TYNTLMDGFAW------------- 159 (325)
Q Consensus 104 ----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~------~~~~ll~~~~~------------- 159 (325)
.-..-+-|-.+|--.++.-...|+.+...++|+..... ++|-. . .|..+--++-.
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 00122346667777777777789999999999887755 33311 1 11111111110
Q ss_pred ----------------------------------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048780 160 ----------------------------------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199 (325)
Q Consensus 160 ----------------------------------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 199 (325)
..-|..|-..+|...|..=.+.+++|.+..+++...+.
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-- 466 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-- 466 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 12244444455555555555555555555555555544
Q ss_pred CCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 048780 200 RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIF 278 (325)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (325)
.+.+..+|......-...|+.+.|..+|.-..+.. .......|-..|+-=...|.+++|..++
T Consensus 467 ----------------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 467 ----------------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred ----------------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 24466778877888888999999999999887653 2233456777777777899999999999
Q ss_pred HHHhhC
Q 048780 279 HMLMQN 284 (325)
Q Consensus 279 ~~~~~~ 284 (325)
+.+.+.
T Consensus 531 erlL~r 536 (677)
T KOG1915|consen 531 ERLLDR 536 (677)
T ss_pred HHHHHh
Confidence 998743
No 86
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.42 E-value=2.6e-05 Score=65.30 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=102.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+.....+++..+...++++.|.++|+++.+.. | .....+++.+...++-.+|.+++++.
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p-------------------ev~~~LA~v~l~~~~E~~AI~ll~~a 226 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--P-------------------EVAVLLARVYLLMNEEVEAIRLLNEA 226 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--C-------------------cHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34456667778888899999999999999863 2 23445688888889999999999888
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc-HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD-VVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
.... +-+......-...|.+.++++.|..+.+++... .|+ ..+|..|..+|...|+++.|+-.++.+.
T Consensus 227 L~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 227 LKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7653 236667777778899999999999999998732 555 4699999999999999999999988764
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.0003 Score=59.99 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH------------HHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------------LVA 68 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~------------~~a 68 (325)
+|++..|.-.|+...+.+ +-+...|..|-...+..++=..|...+.+..+. .|+ -...|+ ..|
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~--NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPT--NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc--cHHHHHHHHHHHhhhhhHHHH
Confidence 478889999999988876 568889999999999999999999999888864 333 333333 667
Q ss_pred HHHHHHHHHh
Q 048780 69 LNLFEEMVNE 78 (325)
Q Consensus 69 ~~~~~~~~~~ 78 (325)
++.++.+...
T Consensus 373 l~~L~~Wi~~ 382 (579)
T KOG1125|consen 373 LKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHHh
Confidence 7777777554
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=0.00017 Score=55.05 Aligned_cols=147 Identities=9% Similarity=0.072 Sum_probs=101.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 118 MTDNLSKDGKMEEANCLLEVMIQRD-VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 118 ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
-+..|...|+++.+....+.+.... -..+......++..+...-...+.+...|..+...|...|++++|...|++..+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~ 101 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ 101 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456777788777655543322111 000233344555555544444556788888888899999999999999988887
Q ss_pred cCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHH-HHcCC--HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHH
Q 048780 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL-YKNGF--VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273 (325)
Q Consensus 197 ~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 273 (325)
.. +.+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+-..+...|++++
T Consensus 102 l~------------------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 102 LR------------------GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred hC------------------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHH
Confidence 52 34566677777764 56666 58999999988887644 67788888888889999999
Q ss_pred HHHHHHHHhh
Q 048780 274 AWDIFHMLMQ 283 (325)
Q Consensus 274 a~~~~~~~~~ 283 (325)
|...|+.+.+
T Consensus 163 Ai~~~~~aL~ 172 (198)
T PRK10370 163 AIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHh
Confidence 9999998873
No 89
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00096 Score=56.97 Aligned_cols=226 Identities=15% Similarity=0.035 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc---h------hhcCCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 048780 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---M------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136 (325)
Q Consensus 66 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 136 (325)
..+.++++...+.. ++....+..-|.++...|+ + .-...+-.+.+|-++---|.-.|...+|.+.|.
T Consensus 261 ~~c~kit~~lle~d----pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 261 KECLKITEELLEKD----PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred HHHHHHhHHHHhhC----CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 33444444444433 3444444444555555555 0 111234457788888888888889999999888
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--C-CCCChhhHHHHHH--
Q 048780 137 VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE--G-IRADATTYNTLFM-- 211 (325)
Q Consensus 137 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g-~~~~~~~~~~ll~-- 211 (325)
+...-. |. =...|-.+-.+|+-.|..|+|+..+...-+- | ..|...+-.....
T Consensus 337 Kat~lD--~~--------------------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 337 KATTLD--PT--------------------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHhhcC--cc--------------------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 655432 21 1234555555555555555555555443321 1 2222211111110
Q ss_pred -----------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh----CC--CCcCHHHHHHHHHHHHhcCChHHH
Q 048780 212 -----------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN----HK--CVLTIETCNCLIDGLCKIGRLKIA 274 (325)
Q Consensus 212 -----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~--~~~~~~~~~~ll~~~~~~g~~~~a 274 (325)
...-.|.|+.+.+-+--..-..+.+.+|..+|+.... .+ ......+++.|-.+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 2223455677777777777778899999999977652 11 112455688899999999999999
Q ss_pred HHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 275 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
...+++..... +-+..++.++--.|...|+++.|.+.|.+-..
T Consensus 475 I~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 475 IDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999877433 55788888999999999999999999987653
No 90
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.34 E-value=8.2e-07 Score=45.26 Aligned_cols=31 Identities=45% Similarity=0.788 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048780 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGI 199 (325)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 199 (325)
++|+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999874
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=0.00036 Score=55.05 Aligned_cols=188 Identities=16% Similarity=0.092 Sum_probs=122.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcC
Q 048780 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101 (325)
Q Consensus 22 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 101 (325)
....+..+...+.+.|++++|...|+++... .|+ +.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~----------------------------~~-------------- 67 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPF----------------------------SP-------------- 67 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------------------------ch--------------
Confidence 4556777888888999999999999888753 111 00
Q ss_pred chhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh-
Q 048780 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK- 180 (325)
Q Consensus 102 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~- 180 (325)
.....+..+...+.+.|++++|...++.+.+.. |+.... ...+..+-.++..
T Consensus 68 --------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~-----------------~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 68 --------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA-----------------DYAYYLRGLSNYNQ 120 (235)
T ss_pred --------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch-----------------HHHHHHHHHHHHHh
Confidence 011245566778889999999999999998763 321110 0122222233333
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHhCCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 048780 181 -------DRNVEDAVSLCREMLSEGIRADAT-TYNTLFMAINNVPPD-SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251 (325)
Q Consensus 181 -------~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 251 (325)
.|++++|.+.|+.+.+.. |+.. ....+..... .... ......+...+.+.|++++|...++...+...
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 121 IDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY-LRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 378999999999998763 3221 1111111000 0000 01122456778899999999999999876532
Q ss_pred --CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 252 --VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 252 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
+.....+..+..++.+.|++++|...++.+..
T Consensus 198 ~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 198 DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22467889999999999999999999998873
No 92
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.31 E-value=9.3e-07 Score=45.05 Aligned_cols=30 Identities=43% Similarity=0.822 Sum_probs=22.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048780 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 322 (325)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777664
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=0.00057 Score=64.30 Aligned_cols=216 Identities=14% Similarity=0.153 Sum_probs=160.1
Q ss_pred CCcchHHHHHHHHHhc-CCCC---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 048780 2 GRASGGFVLLGRILMS-CFTP---NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVN 77 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~ 77 (325)
++.+.|++++++.+.. ++.- -.-.|-+++..-...|.-+...++|++..+..
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------------------------ 1527 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------------------------ 1527 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc------------------------
Confidence 5788999999988765 2221 22467888888788888888888888887531
Q ss_pred hcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048780 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157 (325)
Q Consensus 78 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 157 (325)
|+ ...|..|...|.+.+..++|-++++.|.+.=-
T Consensus 1528 --------d~------------------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-------------- 1561 (1710)
T KOG1070|consen 1528 --------DA------------------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-------------- 1561 (1710)
T ss_pred --------ch------------------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------------
Confidence 11 22577888999999999999999999987611
Q ss_pred HhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHH
Q 048780 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237 (325)
Q Consensus 158 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (325)
-....|...+..+.++++-+.|..++.+..+.= |. ........-.+..-.+.|+.+
T Consensus 1562 --------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk--------------~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1562 --------QTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PK--------------QEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred --------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--ch--------------hhhHHHHHHHHHHHhhcCCch
Confidence 156789999999999999999999999887751 11 113344455566677899999
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcH--HhHHHHHHHHHccCChHHHHHH
Q 048780 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV--VTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 238 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~ 313 (325)
++..+|+.......+ -...|+..++.=.++|+.+.++.+|++.. ..++.|-. ..|.-.+..=..+|+-+.++.+
T Consensus 1618 RGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi-~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVI-ELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHH-hcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999988876533 56789999999999999999999999988 66665543 4556666655666765544433
No 94
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=6.7e-05 Score=62.89 Aligned_cols=124 Identities=22% Similarity=0.187 Sum_probs=100.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
....|+..+...++++.|..+|+++.+.. | .....+...+...++-.+|.+++++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p-----------------------ev~~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--P-----------------------EVAVLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--C-----------------------cHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34566777778899999999999998873 2 3444577788888999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCChH
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-IETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~ 272 (325)
..+. .+.+...+..-...+.+.++++.|+++.+++.+. .|+ -.+|..|..+|.+.|+++
T Consensus 226 aL~~------------------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 226 ALKE------------------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHh------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHH
Confidence 8865 2334555566677899999999999999999876 455 459999999999999999
Q ss_pred HHHHHHHHHh
Q 048780 273 IAWDIFHMLM 282 (325)
Q Consensus 273 ~a~~~~~~~~ 282 (325)
.|+..++.+.
T Consensus 286 ~ALlaLNs~P 295 (395)
T PF09295_consen 286 NALLALNSCP 295 (395)
T ss_pred HHHHHHhcCc
Confidence 9999998775
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00023 Score=54.84 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=70.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
..........+.|++..|...|++.... .| +|...|+.+--+|-+.|++++|..-|.+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p--------------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~q 159 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL--AP--------------------TDWEAWNLLGAALDQLGRFDEARRAYRQ 159 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc--CC--------------------CChhhhhHHHHHHHHccChhHHHHHHHH
Confidence 3334555566666666666666655433 22 2556666666666666666666666665
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHH
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 273 (325)
..+- .+-+....|.|.-.+.-.|+.+.|..++......+.. |..+-..+..+....|+++.
T Consensus 160 Al~L------------------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 160 ALEL------------------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHh------------------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 5553 1224455555555566666666666666555544422 44555555555566666666
Q ss_pred HHHHHHH
Q 048780 274 AWDIFHM 280 (325)
Q Consensus 274 a~~~~~~ 280 (325)
|.++...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 6665443
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=0.00028 Score=53.86 Aligned_cols=144 Identities=8% Similarity=0.036 Sum_probs=103.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC----CCCChh-hHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEG----IRADAT-TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~-~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
-+..|...|+++.+....+.+.... -..+.. ....+-.....-+.+...|..+...|...|++++|...++...+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~ 101 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ 101 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456778888887755543332211 001111 11111123344567888999999999999999999999999988
Q ss_pred CCCCcCHHHHHHHHHH-HHhcCC--hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 249 HKCVLTIETCNCLIDG-LCKIGR--LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 249 ~~~~~~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.... +...+..+..+ +...|+ .++|.+++++..+.. +-+...+..+...+...|++++|...++++.+.
T Consensus 102 l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 102 LRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred hCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7633 77788888776 467777 599999999988432 336677888888999999999999999999764
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00019 Score=62.85 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLN 50 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~ 50 (325)
..-..+...+...|-...|..+|+++.
T Consensus 399 q~q~~laell~slGitksAl~I~Erle 425 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE 425 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH
Confidence 334455666667777777777777665
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.24 E-value=0.0021 Score=54.20 Aligned_cols=252 Identities=12% Similarity=0.069 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH------------HHHHHHHHHHHHhcCCccCccHHHH
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------------LVALNLFEEMVNEFGVICKPDVVTC 90 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~------------~~a~~~~~~~~~~~~~~~~~~~~~~ 90 (325)
...|..+...+...|+.+.+...+....+.. +++........ +.+.+.+++..+.. +.+...+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~ 80 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----PRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHH
Confidence 3456666666777788888777777765532 22222221111 78889999888764 3344444
Q ss_pred HHHHHHHHhcCc----------hhh--cCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048780 91 TNIIDGLCKDGF----------MMD--QGMRPD-VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157 (325)
Q Consensus 91 ~~ll~~~~~~~~----------~~~--~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 157 (325)
.. ...+...|. ... ....|+ ......+...+...|++++|.+.+++..+.. |+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~----------- 146 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD----------- 146 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-----------
Confidence 42 222222222 111 122232 2334455567888999999999999998863 43
Q ss_pred HhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCC--hHhHHHHHHHHHHcCC
Q 048780 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD--SHVYTTYIDGLYKNGF 235 (325)
Q Consensus 158 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~--~~~~~~l~~~~~~~~~ 235 (325)
+...+..+...+...|++++|...+++....... .++ ...|..+...+...|+
T Consensus 147 ---------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----------------~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 147 ---------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----------------SSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred ---------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----------------CcchhHHHHHHHHHHHHHCCC
Confidence 4566777888999999999999999988764211 112 2345567888999999
Q ss_pred HHHHHHHHHHHhhCCC-CcCHHHH-H--HHHHHHHhcCChHHHHHH---HHHHhhC-CCCCCcHHhHHHHHHHHHccCCh
Q 048780 236 VLEAMKVFSAIGNHKC-VLTIETC-N--CLIDGLCKIGRLKIAWDI---FHMLMQN-PGLTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 236 ~~~a~~~~~~m~~~~~-~~~~~~~-~--~ll~~~~~~g~~~~a~~~---~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~ 307 (325)
+++|..++++...... .+..... + .++.-+...|....+.+. ....... .+ ............++...|+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCH
Confidence 9999999999854332 1222211 1 333444445543333332 2211101 11 11222223567778899999
Q ss_pred HHHHHHHHHHHH
Q 048780 308 QKANGLLLDMEE 319 (325)
Q Consensus 308 ~~a~~~~~~m~~ 319 (325)
+.|.++++.+..
T Consensus 281 ~~a~~~L~~l~~ 292 (355)
T cd05804 281 DALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=0.00026 Score=64.17 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=119.8
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 109 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
..+...+-.|.....+.|.+++|+.+++...+. .|+ +......+...+.+.+++++|+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd--------------------~~~a~~~~a~~L~~~~~~eeA~ 140 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPD--------------------SSEAFILMLRGVKRQQGIEAGR 140 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCC--------------------cHHHHHHHHHHHHHhccHHHHH
Confidence 456778888999999999999999999998876 565 6777888899999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 268 (325)
..+++..+.. +.+......+..++...|++++|..+|+++...+ .-+..++..+-.++-..
T Consensus 141 ~~~~~~l~~~------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 141 AEIELYFSGG------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHhhcC------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 9999999863 4456667788899999999999999999998744 23578899999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCCcHHhHHHH
Q 048780 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297 (325)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 297 (325)
|+.++|...|+...+.. .|-...|+.+
T Consensus 202 G~~~~A~~~~~~a~~~~--~~~~~~~~~~ 228 (694)
T PRK15179 202 GALWRARDVLQAGLDAI--GDGARKLTRR 228 (694)
T ss_pred CCHHHHHHHHHHHHHhh--CcchHHHHHH
Confidence 99999999999887433 3333444443
No 100
>PLN02789 farnesyltranstransferase
Probab=98.21 E-value=0.0021 Score=52.87 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=79.5
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhc---CC--
Q 048780 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD---RN-- 183 (325)
Q Consensus 109 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~---g~-- 183 (325)
+.+...|+.....+.+.|+++++++.++++.+.+.. +...|+.....+.+. |.
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~----------------------N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR----------------------NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC----------------------chhHHHHHHHHHHhcccccccc
Confidence 346677888888888889999999999999987544 555666655554443 22
Q ss_pred --HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc----CCHHHHHHHHHHHhhCCCCcCHHH
Q 048780 184 --VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN----GFVLEAMKVFSAIGNHKCVLTIET 257 (325)
Q Consensus 184 --~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~ 257 (325)
.++.+++....... .+.+..+|+-+...+... +...+|...+.+..+.++ .+...
T Consensus 197 ~~~e~el~y~~~aI~~------------------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~a 257 (320)
T PLN02789 197 AMRDSELKYTIDAILA------------------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFA 257 (320)
T ss_pred ccHHHHHHHHHHHHHh------------------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHH
Confidence 24566666555543 244666777667777663 344668788777666543 36777
Q ss_pred HHHHHHHHHh
Q 048780 258 CNCLIDGLCK 267 (325)
Q Consensus 258 ~~~ll~~~~~ 267 (325)
...|++.|+.
T Consensus 258 l~~l~d~~~~ 267 (320)
T PLN02789 258 LSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHh
Confidence 8888888875
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.21 E-value=0.00033 Score=50.48 Aligned_cols=95 Identities=9% Similarity=-0.066 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
.+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ------------------PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35556778889999999999999988752 456778888899999999999999999999876
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
. +.+...+..+-.++...|++++|...|+....
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 34788889999999999999999999998873
No 102
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=0.00034 Score=50.55 Aligned_cols=130 Identities=10% Similarity=0.045 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
..|..++..+ ..++...+...++.+.+..-... | .....-.+...+...|++++|...|+....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~---y------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSP---Y------------AALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCh---H------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455566666 48889999999999988631110 1 122334457888899999999999999988
Q ss_pred CCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 249 HKCVLT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 249 ~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
....|+ ......+...+...|++++|+..++... ... .....+...-..|.+.|++++|...|+.-
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-Ccc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 763333 2345567888899999999999998754 333 34456667778999999999999999863
No 103
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.19 E-value=0.0036 Score=54.75 Aligned_cols=288 Identities=13% Similarity=-0.009 Sum_probs=170.8
Q ss_pred CCcchHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHH
Q 048780 2 GRASGGFVLLGRILMSCFT--PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~ 70 (325)
|.+-.+..+....+.-|+. --..+|..-...|.+.+.++-|..+|....+- ++.+...|.... ++-..
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 4455566667777666654 23467888888999999999999999888764 244555565554 55566
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCchh--------hcCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM--------DQGM-RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
+|++.... ++.....|-.....+...|+.. .... +-+...|-..++.-..+.+++.|..+|.+....
T Consensus 572 llqkav~~----~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 572 LLQKAVEQ----CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHh----CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 67766665 4566677777777777778721 1122 236678888888888889999999998877654
Q ss_pred CCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH----------
Q 048780 142 DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM---------- 211 (325)
Q Consensus 142 g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~---------- 211 (325)
.| +..+|..-+..-.-.++.++|.+++++..+. -|+-.-+-.++-
T Consensus 648 --sg---------------------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 648 --SG---------------------TERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred --CC---------------------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 33 3333433334444456666666666555543 122111111100
Q ss_pred --------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 212 --------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 212 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
....++.....|-.|...=-+.|.+-+|..+|+.-+-.+.+ +...|-..|++=.+.|+.+.|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11223444455555555556666666666666665554433 566666666666666666666655544432
Q ss_pred CC----------------------------CCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 284 NP----------------------------GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 284 ~~----------------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+. ...-|....-++...+-...++++|.+.|.+..+.
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 21 00123344444555555566677777777766543
No 104
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.19 E-value=3.4e-05 Score=64.95 Aligned_cols=125 Identities=11% Similarity=0.008 Sum_probs=100.8
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 048780 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243 (325)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (325)
.+.+......++..+....+++.+..++...+..... ...-..|..++++.|...|..++++.++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~---------------~~~~~~t~ha~vR~~l~~~~~~~~l~~L 126 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC---------------SYLLPSTHHALVRQCLELGAEDELLELL 126 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc---------------ccccCccHHHHHHHHHhcCCHHHHHHHH
Confidence 3446677778888888889999999999998875211 1112234457899999999999999999
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHcc
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 304 (325)
+.=...|+=||..+|+.||+.+.+.|++..|.++...|+ ..+...+..|+.--+.+|.+.
T Consensus 127 ~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~-lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 127 KNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM-LQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH-HhhccCCchHHHHHHHHHHHh
Confidence 998899999999999999999999999999999999998 555556777777777777665
No 105
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.18 E-value=5.4e-05 Score=50.30 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCC--------hHHHHHHHHHHhhCCCCCCcHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKC-VLTIETCNCLIDGLCKIGR--------LKIAWDIFHMLMQNPGLTPDVV 292 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~--------~~~a~~~~~~~~~~~~~~p~~~ 292 (325)
+....|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-..+.+++.|. ..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 344557778888999999999999999999 8999999999999887642 345788899998 778999999
Q ss_pred hHHHHHHHHHc
Q 048780 293 TYNIMIHGFCK 303 (325)
Q Consensus 293 ~~~~li~~~~~ 303 (325)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 106
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.0028 Score=52.33 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=96.5
Q ss_pred chHHHHHHHHHhc-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch----hHHHHH------HHHHHHHH
Q 048780 5 SGGFVLLGRILMS-CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI----TFNTLA------LVALNLFE 73 (325)
Q Consensus 5 ~~A~~l~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~l~------~~a~~~~~ 73 (325)
..|..++-.+... -++-|+.....+.+.+...|+.++|...|++..-. .|+.. .|..++ +..-.+.+
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 3444444444433 34567888899999999999999999999998743 33332 244444 22233333
Q ss_pred HHHHhcCCccCccHHHHHHHHHHHHhcCc------hhhcCCCCChh---hHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 048780 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGMRPDVV---TLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144 (325)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 144 (325)
.+.... +-+...|-.-........+ ..+..+..+.. .|-.=-..+...+++++|.-.|+..... .
T Consensus 291 ~Lf~~~----~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--a 364 (564)
T KOG1174|consen 291 YLFAKV----KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--A 364 (564)
T ss_pred HHHhhh----hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--c
Confidence 332221 1112222111111111111 22333333333 3333335567789999999999877654 3
Q ss_pred CCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 145 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
|. +...|.-|+.+|...|.+.+|.-+-++-.+
T Consensus 365 p~--------------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 365 PY--------------------RLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred hh--------------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 32 678899999999999999999877665543
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.12 E-value=0.00035 Score=50.39 Aligned_cols=96 Identities=10% Similarity=-0.041 Sum_probs=82.6
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048780 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194 (325)
Q Consensus 115 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 194 (325)
+..+...+...|++++|...|+..... .|+ +...|..+..++.+.|++++|...|+..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~--------------------~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPW--------------------SWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC--------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455677888999999999999998765 343 6788899999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 195 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
.+.. +.+..++..+..++...|+.++|...|+...+..
T Consensus 85 l~l~------------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 85 LMLD------------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HhcC------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9852 4577888888999999999999999999987754
No 108
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=5.2e-05 Score=50.37 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 172 NILINGYCKDRNVEDAVSLCREMLSEGI-RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++........|. ..-.+++-..+.+++.|...+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~---------~~ie~kl~~LLtvYqDiL~~~ 99 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS---------EDIENKLTNLLTVYQDILSNK 99 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc---------hhHHHHHHHHHHHHHHHHHhc
Confidence 4456667777999999999999999998 776666666644222222221 111223556788999999999
Q ss_pred CCcCHHHHHHHHHHHHh
Q 048780 251 CVLTIETCNCLIDGLCK 267 (325)
Q Consensus 251 ~~~~~~~~~~ll~~~~~ 267 (325)
++|+..||+.++..+.+
T Consensus 100 lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 100 LKPNDETYNIVLGSLLK 116 (120)
T ss_pred cCCcHHHHHHHHHHHHH
Confidence 99999999999998765
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00048 Score=53.10 Aligned_cols=158 Identities=16% Similarity=0.087 Sum_probs=127.2
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
..+-..+...|+-+....+....... .| .+....+..+....+.|++.+|...|++..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~--------------------~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YP--------------------KDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--Cc--------------------ccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 55666777788888888887764433 11 155666778899999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 048780 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275 (325)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 275 (325)
.- -++|..+|+.+--+|.+.|+++.|..-+.+..+.... ++..++.+.-.+.-.|+.+.|.
T Consensus 128 ~l------------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 128 RL------------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred cc------------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHH
Confidence 75 4778999999999999999999999999988776433 5667888888888999999999
Q ss_pred HHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHH
Q 048780 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316 (325)
Q Consensus 276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (325)
.++...... + .-|...-..+..+....|++++|..+...
T Consensus 189 ~lll~a~l~-~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 189 TLLLPAYLS-P-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhC-C-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999987732 2 33677778888899999999999887544
No 110
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=9.7e-05 Score=62.28 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=98.2
Q ss_pred CCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHH
Q 048780 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186 (325)
Q Consensus 107 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 186 (325)
+.+.+......+++.+....+++++..++.......-.. ..-..+..++|+.|.+.|..+.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~-------------------~~~~~t~ha~vR~~l~~~~~~~ 121 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCS-------------------YLLPSTHHALVRQCLELGAEDE 121 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccc-------------------cccCccHHHHHHHHHhcCCHHH
Confidence 445577778888888888899999999988877652111 1123344689999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 048780 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266 (325)
Q Consensus 187 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 266 (325)
++.++..=...|+-||..|++.+ |+.+.+.|++..|.++...|...+...+..|+..-+.+|.
T Consensus 122 ~l~~L~n~~~yGiF~D~~s~n~L-----------------md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 122 LLELLKNRLQYGIFPDNFSFNLL-----------------MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhChhhcccCCChhhHHHH-----------------HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 99999998888887766665555 9999999999999999988877776777788877777777
Q ss_pred hc
Q 048780 267 KI 268 (325)
Q Consensus 267 ~~ 268 (325)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 66
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.07 E-value=0.0011 Score=60.20 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=113.8
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q 048780 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244 (325)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (325)
..+...+-.|.....+.|..++|..+++...+. .+.+...+..+...+.+.+++++|+...+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR------------------FPDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------------------CCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 345778888889999999999999999999885 24456778888999999999999999999
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 245 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+....... +......+-.++.+.|++++|..+|++... .+ .-+..++..+-.++...|+.++|...|+...+
T Consensus 145 ~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 145 LYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSR-QH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHh-cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99887633 677788888899999999999999999984 21 23477888999999999999999999998765
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=0.00081 Score=59.14 Aligned_cols=193 Identities=12% Similarity=0.083 Sum_probs=122.5
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHH
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFE 73 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~ 73 (325)
-...|..+|+.+. .|.-+|.+|...|+..+|..+..+..+. +||+..|..+. +.|.++++
T Consensus 413 itksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn 481 (777)
T KOG1128|consen 413 ITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSN 481 (777)
T ss_pred hHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhh
Confidence 3445555555543 4667899999999999999998888773 77887777775 55665555
Q ss_pred HHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHH
Q 048780 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153 (325)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 153 (325)
....... ..+-....+.++++++.+.|+.-.+...
T Consensus 482 ~~sarA~-----------------------------------r~~~~~~~~~~~fs~~~~hle~sl~~np---------- 516 (777)
T KOG1128|consen 482 YISARAQ-----------------------------------RSLALLILSNKDFSEADKHLERSLEINP---------- 516 (777)
T ss_pred hhhHHHH-----------------------------------HhhccccccchhHHHHHHHHHHHhhcCc----------
Confidence 4433210 0111112235677777777765444321
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc
Q 048780 154 MDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233 (325)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~ 233 (325)
.-..+|-.+--+..+.++++.|.+.|.....- -+.+...||.+-.+|.+.
T Consensus 517 ------------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------------------~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 517 ------------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------------------EPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred ------------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------------------CCCchhhhhhhhHHHHHH
Confidence 13345555556666777777777777776653 123455677777777777
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 234 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
++-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+..+.
T Consensus 567 ~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77777777777776655 3355566666666677777777777777665
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0018 Score=51.08 Aligned_cols=277 Identities=15% Similarity=0.137 Sum_probs=146.8
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHH---------H-HHHHHHH
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------A-LVALNLF 72 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---------~-~~a~~~~ 72 (325)
++++|++++..-.+.. +.+....+.|..+|-+..++..|-..++++... -|...-|... + ..|+.+.
T Consensus 25 ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4677888887777664 447788888999999999999999999998765 3443333222 1 4555555
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHH--hcCc-------hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-C
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLC--KDGF-------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR-D 142 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~-------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g 142 (325)
..|... ++...-..=+.+-. ..++ +.+..-+-+..+.+..-....+.|+++.|++-|+...+. |
T Consensus 102 ~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 444321 11110000011111 1111 222222334555555555566899999999999998875 4
Q ss_pred CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH---HhCCCC-C
Q 048780 143 VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM---AINNVP-P 218 (325)
Q Consensus 143 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~---~~~~~~-~ 218 (325)
..| ...||..+. ..+.|+.+.|++...++.++|++--+..-..+.. ..+.+. |
T Consensus 176 yqp----------------------llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 176 YQP----------------------LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred CCc----------------------hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 443 445665554 4467899999999999999886532221111100 000000 1
Q ss_pred ChHhHHHHH-------HHHHHcCCHHHHHHHHHHHhh-CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc
Q 048780 219 DSHVYTTYI-------DGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290 (325)
Q Consensus 219 ~~~~~~~l~-------~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 290 (325)
-...-+.++ ..+.+.|+++.|.+.+-.|.. .....|+.|...+.-.=.. +++....+-+.-+.... +..
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~n--PfP 309 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQN--PFP 309 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcC--CCC
Confidence 111122333 334567888888887777742 2233455554433222111 22222222222222111 123
Q ss_pred HHhHHHHHHHHHccCChHHHHHHH
Q 048780 291 VVTYNIMIHGFCKEGQHQKANGLL 314 (325)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~~~ 314 (325)
..||..++-.|++..-++.|..++
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHH
Confidence 345555555666655555555444
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00027 Score=50.33 Aligned_cols=107 Identities=10% Similarity=0.067 Sum_probs=82.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+......+...+...|++++|.+.|+.....+ +.+...|..+...+...|++++|..+++..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD------------------PYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888999999999998887752 345677777888899999999999999988
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
.+.+ +.+...+..+-..|...|++++|...|+...+. .|+...+.
T Consensus 78 ~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~ 122 (135)
T TIGR02552 78 AALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI---CGENPEYS 122 (135)
T ss_pred HhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccccchHH
Confidence 7765 346777777888899999999999999887732 45544433
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.03 E-value=0.002 Score=59.54 Aligned_cols=229 Identities=10% Similarity=0.108 Sum_probs=133.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH----------HHHHHHHHHHHHhcCCccCccHHHH
Q 048780 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----------LVALNLFEEMVNEFGVICKPDVVTC 90 (325)
Q Consensus 21 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~----------~~a~~~~~~~~~~~~~~~~~~~~~~ 90 (325)
.+...+..|+..+...+++++|.++.+...+. .|+...+-.+. ..+.-+ .+... .+...-|
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-----~~~~~~~ 99 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-----FSQNLKW 99 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----cccccch
Confidence 46678999999999999999999999976654 55554433332 111111 11111 1111112
Q ss_pred HHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhh
Q 048780 91 TNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170 (325)
Q Consensus 91 ~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 170 (325)
+.+-..|..-++ ..-+...+-.+..+|-+.|+.++|.++|+++.+.. |+ |+.+
T Consensus 100 ~~ve~~~~~i~~-----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~--------------------n~~a 152 (906)
T PRK14720 100 AIVEHICDKILL-----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RD--------------------NPEI 152 (906)
T ss_pred hHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc--------------------cHHH
Confidence 222222211111 12233467788889999999999999999999875 43 7778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC-
Q 048780 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH- 249 (325)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~- 249 (325)
.|.+.-.|... ++++|.+++.+....-+.- .-|+.+ ...|..++. ....+.+.-.++.+.+...
T Consensus 153 LNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~--kq~~~~----------~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 153 VKKLATSYEEE-DKEKAITYLKKAIYRFIKK--KQYVGI----------EEIWSKLVH--YNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh--hcchHH----------HHHHHHHHh--cCcccchHHHHHHHHHHhhh
Confidence 88888888888 8999988888776541100 000000 000111000 0112233333344444332
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHH
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (325)
|..--..++-.+...|-...+++++..+++.+.+.. +-|.....-++..|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 333345566667788888889999999999988332 335666777777775
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00025 Score=50.57 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=82.2
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
+......+...+...|++++|.+.|+.....+ ..+...+..+...+.+.|++++|...++.... .+ +.+...+..+-
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-LD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCChHHHHHHH
Confidence 34556677888899999999999999988765 34778889999999999999999999998863 32 44567777888
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 048780 299 HGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..|...|++++|...++...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999988764
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00084 Score=48.50 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
..|..++..+. .++...+.+.++.+.... |+. .| .....-.+-..+...|++++|...|+
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s-~y----------------a~~A~l~lA~~~~~~g~~~~A~~~l~ 72 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY--PSS-PY----------------AALAALQLAKAAYEQGDYDEAKAALE 72 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCC-hH----------------HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45666666664 889999999999988763 211 01 12233345678889999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
...... |+.... ....-.|...+...|++++|+..++...... .....+...-..|.+.|+++
T Consensus 73 ~~~~~~--~d~~l~-------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 73 KALANA--PDPELK-------------PLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHhhC--CCHHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHH
Confidence 999875 222111 1234456788899999999999997754433 34556778888999999999
Q ss_pred HHHHHHHHH
Q 048780 273 IAWDIFHML 281 (325)
Q Consensus 273 ~a~~~~~~~ 281 (325)
+|...|+..
T Consensus 136 ~A~~~y~~A 144 (145)
T PF09976_consen 136 EARAAYQKA 144 (145)
T ss_pred HHHHHHHHh
Confidence 999999763
No 118
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.98 E-value=0.00015 Score=54.44 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=57.3
Q ss_pred CCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCchhHHHHH-------------------------HHHH
Q 048780 20 TPNMVTFNSLIKGLCTE-----GRILEAARLFKKLNVFCCDPNVITFNTLA-------------------------LVAL 69 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-------------------------~~a~ 69 (325)
..+..+|..++..|.+. |.++=....++.|.+.|+.-|..+|+.|+ +.|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 68899999999999764 77888888999999999999999999998 5667
Q ss_pred HHHHHHHHhcCCccCccHHHHHHHHHHH
Q 048780 70 NLFEEMVNEFGVICKPDVVTCTNIIDGL 97 (325)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 97 (325)
+++++|...| +-||..++..|+..+
T Consensus 124 ~lL~qME~~g---V~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 124 DLLEQMENNG---VMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHHHHcC---CCCcHHHHHHHHHHh
Confidence 7777776665 444444444444333
No 119
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.97 E-value=0.00025 Score=53.32 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=79.4
Q ss_pred chhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHH--HcCCHHHH
Q 048780 167 DVYSYNILINGYCK-----DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY--KNGFVLEA 239 (325)
Q Consensus 167 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a 239 (325)
+..+|..+++.|.+ .|+++=....+..|.+-|+.-|..+|+.++...-. ...+-..++++-. ...+-+-|
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK---g~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK---GKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC---CCcccccHHHHHhccCcHHHHHH
Confidence 56666677777654 58899999999999999999988888888773211 1111111122211 12356789
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHh
Q 048780 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL-KIAWDIFHMLM 282 (325)
Q Consensus 240 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 282 (325)
++++++|+..|+.||..++..+++.|.+.+.. .+..++.-.|.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887753 33444444444
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.0085 Score=51.56 Aligned_cols=182 Identities=12% Similarity=0.034 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC-------------------CCCcccHHHHHHHHHh--hcCCCCCchhh
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV-------------------NPNTCTYNTLMDGFAW--WSKGCRHDVYS 170 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------------------~~~~~~~~~ll~~~~~--~~~~~~~~~~~ 170 (325)
....-.|.-.|...|.-..|++.++....... .++..++..+-..|.. ...+..+|..+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 34455555667777777777777776644320 0222223333333322 33444567888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
...|--.|--.|++++|.+.|+..+... +.|..+||-|-..++...+.++|...|++..+.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~------------------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL- 493 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVK------------------PNDYLLWNRLGATLANGNRSEEAISAYNRALQL- 493 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcC------------------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-
Confidence 8888888999999999999999998752 447788999999999999999999999998875
Q ss_pred CCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh---C-----CCCCCcHHhHHHHHHHHHccCChHHHHHH
Q 048780 251 CVLT-IETCNCLIDGLCKIGRLKIAWDIFHMLMQ---N-----PGLTPDVVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 251 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
+|+ +.....|--+|...|.+++|.+.|-.... + ..-.++...|.+|=.++.-.++.+.+.+.
T Consensus 494 -qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 494 -QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred -CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 455 33555666778999999999887754431 1 11123456788887777777777755544
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.0094 Score=51.02 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=73.7
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 299 (325)
.+|-.+|+.-.+...+..|..+|.+..+.+..+ ...++++++..|| +++.+-|.++|+.=.++.|-.| .--...+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 456667777777888888999999988887776 6778888888887 4777888888876554544322 22345666
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCC
Q 048780 300 GFCKEGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~g~~pd 325 (325)
-+...++-..|..+|++....++.||
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChh
Confidence 66777777888888888877766654
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0051 Score=47.80 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=103.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
....-...|+..|++++|++..+... +......=+..+.+..+++-|.+.++.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~---------------------------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGE---------------------------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccc---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567888899999998876511 233333345566677888899999999
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK----NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 269 (325)
|.+- .+..+.+-|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|
T Consensus 163 mq~i--------------------ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 163 MQQI--------------------DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHcc--------------------chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 8874 244555655666544 45688888899988653 4678888888888888999
Q ss_pred ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 048780 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ-HQKANGLLLDMEE 319 (325)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 319 (325)
++++|..+++....+. .-++.+...++-.-...|. .+-..+.+.+++.
T Consensus 222 ~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999999988877443 2234444444444444444 3445566665554
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0052 Score=47.76 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=89.6
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHH----hcCCHHHHHHHHHHHH
Q 048780 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC----KDRNVEDAVSLCREML 195 (325)
Q Consensus 120 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~ 195 (325)
..+.+..+++.|.+.++.|.+-. +..+.+-|..+|. ..+.+.+|.-+|++|-
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id------------------------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s 200 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID------------------------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELS 200 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc------------------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh
Confidence 35567788999999999998763 3344444444443 3567999999999998
Q ss_pred HcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCh-HHH
Q 048780 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL-KIA 274 (325)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a 274 (325)
++ .+|+..+.+-...++...|++++|+.++++......+ ++.+...++.+-...|.. +..
T Consensus 201 ~k------------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 201 EK------------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cc------------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 75 5677788888899999999999999999999887755 677776666666666654 445
Q ss_pred HHHHHHHh
Q 048780 275 WDIFHMLM 282 (325)
Q Consensus 275 ~~~~~~~~ 282 (325)
.+.+.++.
T Consensus 262 ~r~l~QLk 269 (299)
T KOG3081|consen 262 ERNLSQLK 269 (299)
T ss_pred HHHHHHHH
Confidence 66666665
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.0018 Score=54.43 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=77.2
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 201 (325)
+...|++++|+..++.+... .|+ |...+....+.+.+.++.++|.+.++.+...
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~--------------------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---- 369 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPD--------------------NPYYLELAGDILLEANKAKEAIERLKKALAL---- 369 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCC--------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence 44556777777777766554 343 5555666667777777777777777777764
Q ss_pred ChhhHHHHHHHhCCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048780 202 DATTYNTLFMAINNVPPD-SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (325)
.|+ ...+-.+..++.+.|+..+|..+++...... +-|+..|..|-++|...|+..++.....+
T Consensus 370 ---------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 370 ---------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred ---------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 222 4445566777777777777777777766554 33677777777777777776666555444
Q ss_pred H
Q 048780 281 L 281 (325)
Q Consensus 281 ~ 281 (325)
.
T Consensus 434 ~ 434 (484)
T COG4783 434 G 434 (484)
T ss_pred H
Confidence 3
No 125
>PLN02789 farnesyltranstransferase
Probab=97.92 E-value=0.0084 Score=49.38 Aligned_cols=220 Identities=10% Similarity=0.051 Sum_probs=136.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh-HHHH--H--------HHHHHHHHHHHHhcCCccCccHHHHHHH
Q 048780 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT-FNTL--A--------LVALNLFEEMVNEFGVICKPDVVTCTNI 93 (325)
Q Consensus 25 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~l--~--------~~a~~~~~~~~~~~~~~~~~~~~~~~~l 93 (325)
++..+-..+...+..++|+.+.+++.+. .|+..+ |+.. + ++++..++.+.+..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------------- 102 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------------- 102 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--------------
Confidence 3444455556667788888888887754 333322 2211 1 34555555555443
Q ss_pred HHHHHhcCchhhcCCCCChhhHHHHHHHHHccCc--HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhH
Q 048780 94 IDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK--MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171 (325)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 171 (325)
+.+..+|+.--..+.+.|+ .++++..++.+.+.. |. +..+|
T Consensus 103 ---------------pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pk--------------------Ny~AW 145 (320)
T PLN02789 103 ---------------PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AK--------------------NYHAW 145 (320)
T ss_pred ---------------CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cc--------------------cHHHH
Confidence 2223334433333344444 366788888887663 22 78889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc---CC----HHHHHHHHH
Q 048780 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN---GF----VLEAMKVFS 244 (325)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~~~ 244 (325)
+...-++...|+++++++.++++.+.+.. +..+|+.....+.+. |. .++.++...
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~------------------N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVR------------------NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCC------------------chhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 99888999999999999999999987532 344454444444333 22 245666665
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhc----CChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC---------------
Q 048780 245 AIGNHKCVLTIETCNCLIDGLCKI----GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG--------------- 305 (325)
Q Consensus 245 ~m~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--------------- 305 (325)
....... -|...|+-+-..+... +...+|.+.+.... ..+ ..+......|+..|....
T Consensus 208 ~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~-~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 208 DAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL-SKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh-ccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 6655543 3677888887777763 33456888887766 322 346677888888887632
Q ss_pred ---ChHHHHHHHHHHH
Q 048780 306 ---QHQKANGLLLDME 318 (325)
Q Consensus 306 ---~~~~a~~~~~~m~ 318 (325)
..++|.++++.+.
T Consensus 285 ~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 285 ELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3367888888873
No 126
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.91 E-value=0.013 Score=51.27 Aligned_cols=209 Identities=12% Similarity=0.122 Sum_probs=124.6
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC------CCCCcccHHHHHHHHHh---------------hcCCCCCch-
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD------VNPNTCTYNTLMDGFAW---------------WSKGCRHDV- 168 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~~---------------~~~~~~~~~- 168 (325)
++..-+--|..+++.+++++|.+.+....... .+.+...|.-+....++ ...+..+|.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 33345667788888888888888887766442 23333444444444443 122223343
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH------------------------------------
Q 048780 169 -YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM------------------------------------ 211 (325)
Q Consensus 169 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~------------------------------------ 211 (325)
..|++|.+-|.+.|++++|.++|++-.+.-. +..-|+.++.
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 4799999999999999999999998766422 2222222221
Q ss_pred -----------------------------------------------HhCCCC------CChHhHHHHHHHHHHcCCHHH
Q 048780 212 -----------------------------------------------AINNVP------PDSHVYTTYIDGLYKNGFVLE 238 (325)
Q Consensus 212 -----------------------------------------------~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 238 (325)
....+. .....|..+.+.|-.+|+++.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 111111 123456777777777888888
Q ss_pred HHHHHHHHhhCCCCcC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC----------C-------CcHHhHHHHH
Q 048780 239 AMKVFSAIGNHKCVLT---IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL----------T-------PDVVTYNIMI 298 (325)
Q Consensus 239 a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~-------p~~~~~~~li 298 (325)
|..+|++..+-..+-- ..+|......=.++.+++.|.++.+... .-.- . .+...|...+
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 8888877765433311 3345555555556677777777766543 1100 1 1344555556
Q ss_pred HHHHccCChHHHHHHHHHHHHcCC
Q 048780 299 HGFCKEGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~g~ 322 (325)
+---..|-++....+++.+.+..+
T Consensus 485 DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhc
Confidence 555566777777777777766543
No 127
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.90 E-value=0.0006 Score=55.16 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHH-HHHcCCHHHHHHHHHHHh
Q 048780 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG-LYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~ 247 (325)
.+|..++...-+.+..+.|..+|.+.++.+ ..+..+|-..... +...++.+.|.+||+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------------------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl 63 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------------------RCTYHVYVAYALMEYYCNKDPKRARKIFERGL 63 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------------------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 468889999999999999999999998642 1123334433444 333567777999999987
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+. ...+...|...+..+.+.++.+.|..+|+.......-.. ....|...++-=.+.|+.+.+..+.+++.+.
T Consensus 64 k~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 64 KK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65 345778899999999999999999999999884432222 3358999999889999999999999888763
No 128
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.0008 Score=54.44 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
.+|..+|+..-+.+.++.|.++|.+..+.+.. ...+....++|. |...++.+.|..+|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--------------------~~~vy~~~A~~E-~~~~~d~~~A~~Ife 60 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--------------------TYHVYVAYALME-YYCNKDPKRARKIFE 60 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---------------------THHHHHHHHHH-HHTCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--------------------CHHHHHHHHHHH-HHhCCCHHHHHHHHH
Confidence 46888999999999999999999999854211 112333333333 333577888999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHhcC
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL---TIETCNCLIDGLCKIG 269 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g 269 (325)
...+. ++.+...|...++.+.+.++.+.|..+|++.... +.+ ....|...+..=.+.|
T Consensus 61 ~glk~------------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 61 RGLKK------------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHHH------------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHH------------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcC
Confidence 99876 4667788888899999999999999999998765 222 2358999999999999
Q ss_pred ChHHHHHHHHHHhh
Q 048780 270 RLKIAWDIFHMLMQ 283 (325)
Q Consensus 270 ~~~~a~~~~~~~~~ 283 (325)
+++.+.++.+.+.+
T Consensus 122 dl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 122 DLESVRKVEKRAEE 135 (280)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988873
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0055 Score=47.28 Aligned_cols=155 Identities=12% Similarity=0.016 Sum_probs=102.9
Q ss_pred ccCcHHHHHHHHHHHHHC---C-CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048780 124 KDGKMEEANCLLEVMIQR---D-VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199 (325)
Q Consensus 124 ~~g~~~~a~~~~~~m~~~---g-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 199 (325)
...+.++.++++.++... | ..++. -..|.-++-+....|+.+.|..+++.+...-
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~--------------------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f- 82 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEI--------------------WTLYEQVFIAALDTGRDDLAQKCINQLRDRF- 82 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchH--------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-
Confidence 346778888888887753 2 22321 2245555666677888888888888887763
Q ss_pred CCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048780 200 RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279 (325)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (325)
|.+.- +--.-..-+-..|++++|+++++.+.+.+ +.|..++--=+...-..|..-.|.+-+.
T Consensus 83 -p~S~R----------------V~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln 144 (289)
T KOG3060|consen 83 -PGSKR----------------VGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELN 144 (289)
T ss_pred -CCChh----------------HHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 22111 11111222345678888888888887776 4466677666666666777667777666
Q ss_pred HHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 280 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
...+. +.-|...|.-+...|...|++++|.-.++++.-
T Consensus 145 ~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 145 EYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 66533 356788888888888888888888888888764
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.022 Score=52.69 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchhHHHHH------------------
Q 048780 8 FVLLGRILMSCFT--PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC--CDPNVITFNTLA------------------ 65 (325)
Q Consensus 8 ~~l~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l~------------------ 65 (325)
+.+.++..+.+++ .|+..-+..+.++...+-..+-.++++++.-.. +.-+...-|.++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 3455666655543 466677778888888888888888888886422 111222233333
Q ss_pred ------------------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhh-cCCCCChhhHHHHHHHHHccC
Q 048780 66 ------------------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-QGMRPDVVTLNVMTDNLSKDG 126 (325)
Q Consensus 66 ------------------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g 126 (325)
++|..+|+.. ..+....+.|+.-.....+..+ ..---....|+.+..+-.+.|
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf--------~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKF--------DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHh--------cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcC
Confidence 3333333322 2333444444433222222111 111223456777777777777
Q ss_pred cHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 048780 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205 (325)
Q Consensus 127 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 205 (325)
.+.+|.+-|=+. | |+..|.-+++...+.|.+++-.+++...+++...|...+
T Consensus 1119 ~v~dAieSyika-------d--------------------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA-------D--------------------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred chHHHHHHHHhc-------C--------------------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 777777665321 1 566777888888888888888887777776665555444
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=0.013 Score=49.56 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=98.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC-
Q 048780 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT- 254 (325)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~- 254 (325)
..+...|.+++|+..+..+... .+.|...+....+.+.+.++..+|.+.++.+.... |+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~ 373 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA------------------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNS 373 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCc
Confidence 3455789999999999998876 34566667777899999999999999999998764 55
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
....-.+-.++.+.|++.+|..+++.... ..+-|+..|..|.++|...|+..++.....+..
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 55667788899999999999999998763 336678899999999999998888777666553
No 132
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.83 E-value=0.018 Score=50.39 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=95.0
Q ss_pred CCchhhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 048780 165 RHDVYSYNI--LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242 (325)
Q Consensus 165 ~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (325)
+|+...|.. ++..|-+.|+++.|..+++....+ .|+ -+..|..=.+.+...|++++|..+
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPT----------------liEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPT----------------LIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cch----------------HHHHHHHHHHHHHhcCChHHHHHH
Confidence 566665554 677889999999999999988765 222 123444456888999999999999
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--Cc----HHhHHHH--HHHHHccCChHHHHHHH
Q 048780 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT--PD----VVTYNIM--IHGFCKEGQHQKANGLL 314 (325)
Q Consensus 243 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p~----~~~~~~l--i~~~~~~g~~~~a~~~~ 314 (325)
+++..+.+ .+|...-.--..-..++++.++|.++..... ..|.. -+ .-+|-.+ -.+|.+.|++..|++=|
T Consensus 428 l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT-r~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 428 LDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT-REGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh-hcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 99998876 4576666566777778999999999998887 44431 11 1223322 34678888888777666
Q ss_pred HHHH
Q 048780 315 LDME 318 (325)
Q Consensus 315 ~~m~ 318 (325)
..+.
T Consensus 506 h~i~ 509 (700)
T KOG1156|consen 506 HEIE 509 (700)
T ss_pred hhHH
Confidence 5543
No 133
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00062 Score=44.55 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHH
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (325)
+..+...+...|++++|...++...+... .+...+..+...+...+++++|.+.++...... ..+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHH
Confidence 45567788889999999999999877642 245678888889999999999999999877332 334467888888999
Q ss_pred ccCChHHHHHHHHHHHHc
Q 048780 303 KEGQHQKANGLLLDMEET 320 (325)
Q Consensus 303 ~~g~~~~a~~~~~~m~~~ 320 (325)
..|+++.|...++...+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
No 134
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.82 E-value=0.021 Score=50.96 Aligned_cols=247 Identities=13% Similarity=0.038 Sum_probs=136.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHH-----------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchh
Q 048780 36 EGRILEAARLFKKLNVFCCDPNVITFNTLA-----------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM 104 (325)
Q Consensus 36 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-----------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 104 (325)
.+..+.+..-+......+...+..++..+. .++..+...+.+.. .|...++.+.+.-.-....+.
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~----i~Re~~~d~ilslm~~~~k~r 315 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESL----IPRENIEDAILSLMLLLRKLR 315 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhc----cccccHHHHHHHHHHHHHHHH
Confidence 355566666666666666566666665554 33334444444433 333222222222222222233
Q ss_pred hcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh------------hcCCCC--Cc-hh
Q 048780 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW------------WSKGCR--HD-VY 169 (325)
Q Consensus 105 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~------------~~~~~~--~~-~~ 169 (325)
...+..|...|..+--+..+.|+++.+-+.|++....-+. ..+.|+.+-..++. ...... |+ ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3455678889999999999999999999999887654322 22233333222222 111222 32 33
Q ss_pred hHHHHHHHHH-hcCCHHHHHHHHHHHHHc--C----CCCChhhHHHHHH-------------------------Hh-CCC
Q 048780 170 SYNILINGYC-KDRNVEDAVSLCREMLSE--G----IRADATTYNTLFM-------------------------AI-NNV 216 (325)
Q Consensus 170 ~~~~li~~~~-~~g~~~~a~~~~~~m~~~--g----~~~~~~~~~~ll~-------------------------~~-~~~ 216 (325)
.+-..-..|. +.+..++++++-.+.... + +.|-...+..+-. .+ ..-
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333 356777777776666551 1 2222222211111 11 112
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (325)
+.|+.+.--+.--|+..++++.|++..++..+.+-.-+...|..|...+...+++.+|+.+.+....+.|.
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 22333333344456667788888888888887755668888888888888888888888888877655443
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.0011 Score=45.84 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=78.2
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CCcHHhHHHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC--VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL-TPDVVTYNIM 297 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l 297 (325)
.++..+...+.+.|++++|.+.|+.+..... ......+..+..++.+.|+++.|...|+.+.....- ......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456667888999999999999999976532 112456777899999999999999999998743221 1224567788
Q ss_pred HHHHHccCChHHHHHHHHHHHHc
Q 048780 298 IHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..++.+.|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 88899999999999999999876
No 136
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.79 E-value=0.032 Score=53.52 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=106.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048780 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194 (325)
Q Consensus 115 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 194 (325)
+..+...+...|++++|...+++.....-.... ......+..+...+...|++++|.+.+...
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-----------------QQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-----------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555667779999999998887654211100 001233445666778899999999999888
Q ss_pred HHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC---HHHHHHHHHHHHhcCCh
Q 048780 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT---IETCNCLIDGLCKIGRL 271 (325)
Q Consensus 195 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~ 271 (325)
....-...... ... .......+..+...|+.+.|.+.+........... ...+..+..++...|+.
T Consensus 639 ~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 639 ENLLGNGRYHS-DWI----------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHhcccccH-hHh----------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 65311100000 000 00001123445567889999888877654221111 11234566778888999
Q ss_pred HHHHHHHHHHhh---CCCCCCc-HHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 272 KIAWDIFHMLMQ---NPGLTPD-VVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 272 ~~a~~~~~~~~~---~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
++|...++.... ..|..++ ..+...+-.++.+.|+.++|...+.+..+.
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999888887653 2232222 234555667788899999999888887653
No 137
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00077 Score=44.07 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++......
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD------------------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC------------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5556778888999999999999988752 2233566777888999999999999999987765
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 251 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
. .+..++..+...+...|+++.|...+....
T Consensus 65 ~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 65 P-DNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred C-cchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 355688888899999999999999998876
No 138
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.77 E-value=0.026 Score=50.47 Aligned_cols=128 Identities=16% Similarity=0.079 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
|......+.+.++.++|...+.+.... .+-....|...-..+...|..++|.+.|......+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~------------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI------------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc------------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 334444455555555555554444432 23344455555666777889999999988776554
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHH--HHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 251 CVLTIETCNCLIDGLCKIGRLKIAWD--IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 251 ~~~~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.. ++.+..++-.++.+.|+..-|.. ++..+. +.+ +-+...|-.+-..+.+.|+.+.|.+.|+.-.+
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dal-r~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDAL-RLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 22 45577888889999998777777 888877 332 44778899999999999999999999987654
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.71 E-value=0.0052 Score=56.95 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...+..|+..+...+++++|.++.+...+. .|+...+..+..... ...+...+.... .++.......++..+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~-~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILS-LSRRPLNDSNLL-NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHH-Hhhcchhhhhhh-hhhhhcccccchhHHHHH
Confidence 4567888888888999999999998865554 454433332222211 111111111111 344444444444333333
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
...|... ..+..++-.+..+|-+.|+.++|..+++++.+... -|+.+.|.+.-.|+.. +
T Consensus 106 ~~~i~~~-------------------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 106 CDKILLY-------------------GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-D 164 (906)
T ss_pred HHHHHhh-------------------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-h
Confidence 3344332 33445667778888888888888888888887773 3777788888888877 8
Q ss_pred hHHHHHHHHHHh
Q 048780 271 LKIAWDIFHMLM 282 (325)
Q Consensus 271 ~~~a~~~~~~~~ 282 (325)
+++|.+++.+..
T Consensus 165 L~KA~~m~~KAV 176 (906)
T PRK14720 165 KEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHH
Confidence 888877776654
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.0034 Score=43.33 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
++-.+...+.+.|++++|.+.|..+.+.. |+ .+.....+..+..++.+.|++++|.+.|+.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PK-------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 45667778889999999999999998752 11 0112345666789999999999999999998764
Q ss_pred CCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 250 KCV--LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 250 ~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
... .....+..+..++.+.|++++|...++.+...
T Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 69 YPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 322 23566788888999999999999999998843
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=0.00013 Score=45.00 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=48.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 62 (325)
+|++++|+++|+.+.... +-+...+..+..+|.+.|++++|.++++++... .|+...|.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 589999999999998885 458888889999999999999999999999876 44433333
No 142
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.65 E-value=0.0013 Score=45.86 Aligned_cols=84 Identities=8% Similarity=0.036 Sum_probs=72.6
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhh---------------CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGN---------------HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---------------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
|..++..+|.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778889999999999999999876521 23458999999999999999999999999999999
Q ss_pred CCCCCCcHHhHHHHHHHHH
Q 048780 284 NPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 284 ~~~~~p~~~~~~~li~~~~ 302 (325)
.++++-+..+|..|++-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 9999999999999998543
No 143
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.65 E-value=0.00072 Score=47.10 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=76.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
|..++.++|.++++.|+++....+++..- |+.++...-..-+.......|+..+..+++.+|+.++++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFF 78 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45678899999999999999999997654 3333221111103344567899999999999999999999999999888
Q ss_pred hh-CCCCcCHHHHHHHHHHHHhc
Q 048780 247 GN-HKCVLTIETCNCLIDGLCKI 268 (325)
Q Consensus 247 ~~-~~~~~~~~~~~~ll~~~~~~ 268 (325)
.+ -+++.+..+|..|+.=+...
T Consensus 79 s~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 79 SRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHh
Confidence 55 47888889999998855443
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.00017 Score=46.61 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHH
Q 048780 233 NGFVLEAMKVFSAIGNHKCV-LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (325)
.|+++.|+.+++.+.+.... ++...+-.+..+|.+.|++++|..+++. . ..+. .+....-.+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 58899999999999876542 3455666689999999999999999987 3 2221 23344445578899999999999
Q ss_pred HHHHH
Q 048780 312 GLLLD 316 (325)
Q Consensus 312 ~~~~~ 316 (325)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99876
No 145
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.56 E-value=0.0029 Score=56.11 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=17.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 29 LIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 29 ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
.+.+..+.+.|.+|+.+++.+...
T Consensus 738 aieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhh
Confidence 455566777888888888877654
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00036 Score=45.06 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 260 (325)
.|+++.|+.+++++.+.... .++...+-.+..+|.+.|++++|..+++. .+.+.. +....-.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~----------------~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT----------------NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG----------------THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC----------------ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHH
Confidence 68899999999999986311 01334455579999999999999999988 333222 3345556
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 048780 261 LIDGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~ 280 (325)
+..+|.+.|++++|.+++++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhc
Confidence 68899999999999999875
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0039 Score=52.40 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=82.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC
Q 048780 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254 (325)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 254 (325)
...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..++....... .+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~ 69 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD------------------PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SL 69 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CC
Confidence 345667899999999999998862 34567788889999999999999999999987653 36
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHH
Q 048780 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299 (325)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 299 (325)
...|..+..+|...|++++|...|+..... .|+......++.
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l---~P~~~~~~~~l~ 111 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGASL---APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 778889999999999999999999998732 455444444443
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.46 E-value=0.046 Score=48.98 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHH
Q 048780 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257 (325)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 257 (325)
-.....|.+|+.+++.++..+. ...-|..+.+-|+..|+++.|+++|-+.- .
T Consensus 742 ai~akew~kai~ildniqdqk~-------------------~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~ 793 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT-------------------ASGYYGEIADHYANKGDFEIAEELFTEAD---------L 793 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc-------------------ccccchHHHHHhccchhHHHHHHHHHhcc---------h
Confidence 3444556666666666655421 12234555677777788888777775432 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHH
Q 048780 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
++-.|.+|.+.|+|+.|.++-.+.. |-...+..|-+-..-.-.+|++.+|.++
T Consensus 794 ~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 794 FKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred hHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 4556777777777777777765543 1122333333333334444444444443
No 149
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.11 Score=48.42 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=90.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH---HHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhc---
Q 048780 33 LCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL---FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ--- 106 (325)
Q Consensus 33 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~--- 106 (325)
+..++-+++|..+|++.. .+....+.+++....+ ++-..+ --.+..|+.+..+-.+.|.+.+.
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i~~ldRA~efAe~------~n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIENIGSLDRAYEFAER------CNEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHhhhHHHHHHHHHh------hCChHHHHHHHHHHHhcCchHHHHHH
Confidence 344556777777777653 3445555555222211 111111 12456788888888777763322
Q ss_pred -CCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh-------cCCCCCchhhHHHHHHHH
Q 048780 107 -GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-------SKGCRHDVYSYNILINGY 178 (325)
Q Consensus 107 -~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-------~~~~~~~~~~~~~li~~~ 178 (325)
--.-|+..|..+++.+.+.|.+++-.+.+....+..-.|... +.++-+|++. +--.-||......+-+-|
T Consensus 1127 yikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1127 YIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRC 1204 (1666)
T ss_pred HHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHH
Confidence 223478889999999999999999999998877776666433 4555666651 112234555555556666
Q ss_pred HhcCCHHHHHHHHHHH
Q 048780 179 CKDRNVEDAVSLCREM 194 (325)
Q Consensus 179 ~~~g~~~~a~~~~~~m 194 (325)
...|.++.|.-+|...
T Consensus 1205 f~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred hhhhhhHHHHHHHHHh
Confidence 6666666666555443
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.41 E-value=0.0064 Score=51.15 Aligned_cols=92 Identities=16% Similarity=0.059 Sum_probs=77.6
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 198 (325)
...+...|++++|++.|++..+. .|+ +...|..+..+|.+.|++++|+..++...+..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~--------------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPN--------------------NAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45667789999999999999876 333 56778888899999999999999999998852
Q ss_pred CCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 199 ~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
+.+...|..+..+|...|++++|...|++..+.+
T Consensus 67 ------------------P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 67 ------------------PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred ------------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3456778888999999999999999999988754
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.014 Score=43.50 Aligned_cols=88 Identities=14% Similarity=-0.024 Sum_probs=66.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
....+..+...+...|++++|...|++..+....+. .....+..+...+.+.|++++|...+++.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---------------DRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445677788888999999999999999886532111 01346778899999999999999999988
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
.+.... +...+..+...+...|+
T Consensus 99 l~~~p~-~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 99 LELNPK-QPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHhCcc-cHHHHHHHHHHHHHcCC
Confidence 775422 45667777777877776
No 152
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.045 Score=49.62 Aligned_cols=229 Identities=14% Similarity=0.085 Sum_probs=117.9
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-C--------CCCC-chhHHHH-------
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF-C--------CDPN-VITFNTL------- 64 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--------~~~~-~~~~~~l------- 64 (325)
|+.+.|.+-.+.+. +..+|..+.+.|.+..+++-|.-.+-.|... | ..|+ ...-...
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 66677766665554 4478999999999988888777666666532 1 1111 1111111
Q ss_pred HHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 048780 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144 (325)
Q Consensus 65 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 144 (325)
+++|..+|++-++ |..|=+.|-..|.|++|+++-+.--+..+
T Consensus 816 lEeA~~lYr~ckR-------------------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL- 857 (1416)
T KOG3617|consen 816 LEEALILYRQCKR-------------------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL- 857 (1416)
T ss_pred HHHHHHHHHHHHH-------------------------------------HHHHHHHHHhcccHHHHHHHHhhccceeh-
Confidence 1445544444433 23333445566778888777654222111
Q ss_pred CCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH------HhCCCCC
Q 048780 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM------AINNVPP 218 (325)
Q Consensus 145 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~------~~~~~~~ 218 (325)
..||......+-..++.+.|++.|++-... -...+..+.. ..-.-..
T Consensus 858 -----------------------r~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 858 -----------------------RNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred -----------------------hhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHHhChHHHHHHHHhcc
Confidence 123444444445566677777776643211 1111111110 0000122
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
|...|.---.-+-..|+.+.|+.++...++ |-++++..|-.|+.++|-++-++-. |....-.|.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhla 974 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLA 974 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHH
Confidence 333333334444456777777777766543 3455555566666666666554321 444455556
Q ss_pred HHHHccCChHHHHHHHHHH
Q 048780 299 HGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m 317 (325)
+.|-..|++.+|..+|-+.
T Consensus 975 R~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 6666666666666555443
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.39 E-value=0.015 Score=43.30 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=67.0
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
....+..+...+...|++++|...|++..+....+.. ....+..+..++.+.|++++|...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-------------------RSYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-------------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3446777888888999999999999998875432210 235677888999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
+.+..+.. +.+...+..+...+...|+...+.
T Consensus 95 ~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 95 YHQALELN------------------PKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHhC------------------cccHHHHHHHHHHHHHcCChHhHh
Confidence 99988752 223445556667777766644433
No 154
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.0014 Score=40.18 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.|++++|+++|+.+...... +...+..+..+|.+.|++++|..+++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555544433211 44444445555555555555555555444
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00075 Score=41.04 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=45.5
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
+|++++|++.|+.+.+.. +-+...+..+...+.+.|++++|...|+++.+.
T Consensus 10 ~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp CTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 589999999999999987 558889999999999999999999999999765
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.011 Score=43.84 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...|..+...+...|++++|+..|+........+. ....+|..+-..+...|++++|.+.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-------------------~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-------------------DRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------hhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45677777888889999999999999876632211 02346788889999999999999999
Q ss_pred HHHHHc
Q 048780 192 REMLSE 197 (325)
Q Consensus 192 ~~m~~~ 197 (325)
+...+.
T Consensus 96 ~~Al~~ 101 (168)
T CHL00033 96 FQALER 101 (168)
T ss_pred HHHHHh
Confidence 998864
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.061 Score=43.73 Aligned_cols=220 Identities=10% Similarity=0.044 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV-ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
..|......|...|++++|.+.|.+..+.-...+. ..-...+..+..++.+.. ..--...+...+..|...|+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~------~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGD------PDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC------HHHHHHHHHHHHHHHHhcCc
Confidence 45777777888889999999999888653222111 111111233444444331 11123456666666666665
Q ss_pred hhhcCCCCChhhHHHHHHHHHcc-CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhc
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKD-GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (325)
.... ...+..+...|-.. |++++|++.|++..+.--.-+. ...-..++..+...+.+.
T Consensus 110 ~~~a-----A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~----------------~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 110 FSQA-----AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS----------------PHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHH-----HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----------------hhhHHHHHHHHHHHHHHh
Confidence 3322 34667777888888 8999999999877653100000 001234567788889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCcC--HHH
Q 048780 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH--KCVLT--IET 257 (325)
Q Consensus 182 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~--~~~ 257 (325)
|++++|.++|++....-...+..-++. ...+-..+-++...|+...|.+.+++.... ++..+ ...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~-----------~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSA-----------KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 999999999999887543222111110 012333455677789999999999988654 33322 345
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHh
Q 048780 258 CNCLIDGLCKIGR---LKIAWDIFHMLM 282 (325)
Q Consensus 258 ~~~ll~~~~~~g~---~~~a~~~~~~~~ 282 (325)
...|+.+|- .|| ++.+..-|+.+.
T Consensus 238 ~~~l~~A~~-~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYE-EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHH-TT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHcccC
Confidence 566777764 344 445555555543
No 158
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.1 Score=45.48 Aligned_cols=181 Identities=14% Similarity=0.094 Sum_probs=97.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF---------------------------- 52 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------------------------- 52 (325)
+|++++|+.....+...+ +-+...+..=+.+..+.+.|++|+.+.+.-...
T Consensus 25 ~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred chHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 467888888888888776 556667777777777888888877554432210
Q ss_pred CCCCCch-h---HHHHH------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc--hhhcCCCCChhhHHHHHH
Q 048780 53 CCDPNVI-T---FNTLA------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--MMDQGMRPDVVTLNVMTD 120 (325)
Q Consensus 53 g~~~~~~-~---~~~l~------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~~ll~ 120 (325)
|..++.. + ...++ ++|+.+|+.+.+.+. -.-+...-..++.+-..... +......| ..+|..+.+
T Consensus 104 ~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~--dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~syel~yN 180 (652)
T KOG2376|consen 104 GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS--DDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSYELLYN 180 (652)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchHHHHHH
Confidence 0011100 0 00000 778888888866551 11222233333333222222 33333333 445555554
Q ss_pred H---HHccCcHHHHHHHHHHHHHCCCC----CCc--ccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 121 N---LSKDGKMEEANCLLEVMIQRDVN----PNT--CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 121 ~---~~~~g~~~~a~~~~~~m~~~g~~----~~~--~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
. +...|++.+|+++++...+.+.. -|. .-+-.=+ +. +---|.-.+-..|+-++|..++
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el------------~~-IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL------------NP-IRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH------------HH-HHHHHHHHHHHhcchHHHHHHH
Confidence 4 45679999999999988433211 000 0000000 00 1111333455689999999999
Q ss_pred HHHHHcC
Q 048780 192 REMLSEG 198 (325)
Q Consensus 192 ~~m~~~g 198 (325)
....+..
T Consensus 248 ~~~i~~~ 254 (652)
T KOG2376|consen 248 VDIIKRN 254 (652)
T ss_pred HHHHHhc
Confidence 8888764
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.27 E-value=0.012 Score=42.41 Aligned_cols=96 Identities=8% Similarity=-0.122 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
...-.+..-+...|++++|..+|+.+...+.. +..-|-.|-.+|-..|++++|...|.... ... +-|+..+-.+-.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCchHHHHHHHH
Confidence 33444556677899999999999999877643 67778888888999999999999999887 443 3467788888999
Q ss_pred HHccCChHHHHHHHHHHHH
Q 048780 301 FCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~ 319 (325)
+...|+.+.|.+.|+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.27 E-value=0.046 Score=48.31 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=94.2
Q ss_pred CCCCChhhHHHHHHHHHcc-----CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhc
Q 048780 107 GMRPDVVTLNVMTDNLSKD-----GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181 (325)
Q Consensus 107 ~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (325)
+.+.+...|...+.+.... ++...|.++|++..+. .|+ ....|..+..++...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~--------------------~a~a~A~la~~~~~~ 389 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPD--------------------FTYAQAEKALADIVR 389 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCC--------------------cHHHHHHHHHHHHHH
Confidence 4456778888888876543 3377899999998876 454 223333332222221
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc
Q 048780 182 --------RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253 (325)
Q Consensus 182 --------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 253 (325)
.++..+.+......... ..+.+..+|.++.-.....|++++|...+++..... |
T Consensus 390 ~~~~~~~~~~l~~a~~~~~~a~al~----------------~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--p 451 (517)
T PRK10153 390 HSQQPLDEKQLAALSTELDNIVALP----------------ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--M 451 (517)
T ss_pred HhcCCccHHHHHHHHHHHHHhhhcc----------------cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C
Confidence 11223333333222210 123344667777677777899999999999998875 6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHh
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 293 (325)
+...|..+-..+...|+.++|...++..... .|...+
T Consensus 452 s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L---~P~~pt 488 (517)
T PRK10153 452 SWLNYVLLGKVYELKGDNRLAADAYSTAFNL---RPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCch
Confidence 8889999999999999999999999887633 444444
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.22 E-value=0.026 Score=41.88 Aligned_cols=97 Identities=13% Similarity=-0.010 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...|..+...+...|++++|...|+........+ .....+|..+...+...|++++|++.++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------------YDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556777788888999999999999987652111 0123467788899999999999999999887
Q ss_pred hCCCCcCHHHHHHHHHHHH-------hcCChHHHHHHHHH
Q 048780 248 NHKCVLTIETCNCLIDGLC-------KIGRLKIAWDIFHM 280 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~-------~~g~~~~a~~~~~~ 280 (325)
... +....++..+...+. ..|+++.|...+++
T Consensus 100 ~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 100 ERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 653 223455666666666 77787766555543
No 162
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.066 Score=41.58 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=77.7
Q ss_pred HccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048780 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202 (325)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 202 (325)
-..|++++|.++++...+.. |+ |.+++--=+...-..|+.-+|++-+....+.
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd--pt--------------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~----- 149 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD--PT--------------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK----- 149 (289)
T ss_pred HHhhchhhHHHHHHHHhccC--cc--------------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----
Confidence 34577888888888877664 32 4555555555555566666777777666665
Q ss_pred hhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHH
Q 048780 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG---RLKIAWDIFH 279 (325)
Q Consensus 203 ~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~ 279 (325)
+..|...|.-+...|...|++++|.-.++++.-.. +.++..|..+-..+--.| +.+-+.+.|.
T Consensus 150 -------------F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 150 -------------FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred -------------hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56677788888888888888888888888876543 224444455544433333 4556777777
Q ss_pred HHh
Q 048780 280 MLM 282 (325)
Q Consensus 280 ~~~ 282 (325)
+..
T Consensus 216 ~al 218 (289)
T KOG3060|consen 216 RAL 218 (289)
T ss_pred HHH
Confidence 665
No 163
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.039 Score=43.88 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=45.7
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 048780 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323 (325)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 323 (325)
..+.|+++.|.+-|+...+-.|+.|- ..|+..+.-| +.|+++.|++...++.+.|++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 44789999999999998867777764 5677666555 457899999999999999875
No 164
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.1 Score=43.49 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=43.9
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHH
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 309 (325)
.....+++.|+.+-+...+.+.. +...|-.--+.+...|+.++|.-.|+....-. +-+..+|.-|+..|...|++.+
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHH
Confidence 33445556666655555443311 23333333344555666666666666544211 2345666666666666666666
Q ss_pred HHHHHHH
Q 048780 310 ANGLLLD 316 (325)
Q Consensus 310 a~~~~~~ 316 (325)
|.-.-+.
T Consensus 387 A~~~An~ 393 (564)
T KOG1174|consen 387 ANALANW 393 (564)
T ss_pred HHHHHHH
Confidence 6544433
No 165
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.14 E-value=0.14 Score=44.21 Aligned_cols=156 Identities=11% Similarity=0.097 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
.+|...|+.-.+..-++.|..+|.+..+.+..+ ..+.+++++|..|| .++.+-|.++|+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~--------------------hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR--------------------HHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc--------------------chhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 467888898899999999999999998887655 26677888888777 577889999998
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCC
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGR 270 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~ 270 (325)
.=.++ ...+..--...++-+...++-..+..+|++....++.|+ ..+|..+|.-=..-|+
T Consensus 426 LGLkk------------------f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 426 LGLKK------------------FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHh------------------cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 76654 233444455668888889999999999999988866655 4689999999999999
Q ss_pred hHHHHHHHHHHhhCCC--CCCcHHhHHHHHHHHHccCCh
Q 048780 271 LKIAWDIFHMLMQNPG--LTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~ 307 (325)
...+.++-+++..... ..+...+-..+++-|.-.+..
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 9999999887764333 333334445666666655544
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.13 E-value=0.21 Score=45.84 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=38.1
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
|..|...+-..|...++.++|..+|+...+. .| +......+..+|++.+.+.+-.+
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P---------------------~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YP---------------------SEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CC---------------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777778888889999999999887665 33 44445556666666666554333
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.12 E-value=0.054 Score=39.03 Aligned_cols=93 Identities=6% Similarity=-0.087 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 253 (325)
+-.-+...|++++|..+|+.+.... +.+..-|-.|-.++-..|++++|++.+........ -
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D------------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-d 101 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD------------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-D 101 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-C
Confidence 3444556777777777777766542 22444566666677777777777777777766653 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 285 (325)
|+..+-.+-.++...|+.+.|.+.|+......
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 66677777777777777777777777665333
No 168
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.0032 Score=45.50 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCCcHHhH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ----NPGLTPDVVTY 294 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 294 (325)
+...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+...|.+.|+.+.. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455777788899999999999888776 34888999999999999999999999887642 46888887653
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.09 Score=41.95 Aligned_cols=157 Identities=14% Similarity=0.112 Sum_probs=107.0
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRD-VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (325)
...|...|.++.+ +..+.... -.|+..+...++......-...+-|...|-.|-..|.+.|+++.|..-|.+..+-
T Consensus 109 ~g~y~~vg~~~q~---~~r~~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 109 LGLYQAVGAPEQP---ADRLADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred hhhhhhcCCcccc---chhhhcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 3344455555555 33333332 2366666666666665544455558888999999999999999999999988775
Q ss_pred CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc---CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHH
Q 048780 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN---GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274 (325)
Q Consensus 198 g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 274 (325)
.+++...+..+..++... ....++.++|+++...+.. |..+...|-..+...|++.+|
T Consensus 186 ------------------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A 246 (287)
T COG4235 186 ------------------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEA 246 (287)
T ss_pred ------------------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHH
Confidence 244555555556655443 3466888999999877633 677777778888899999999
Q ss_pred HHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 275 WDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 275 ~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
...|+.|.+. -|....+..+|..
T Consensus 247 ~~~Wq~lL~~---lp~~~~rr~~ie~ 269 (287)
T COG4235 247 AAAWQMLLDL---LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHhc---CCCCCchHHHHHH
Confidence 9999998833 3444556566543
No 170
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.18 Score=44.00 Aligned_cols=272 Identities=14% Similarity=0.057 Sum_probs=148.8
Q ss_pred CCCcchHHHHHHHHHhcCC------CCchhh--------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH----H
Q 048780 1 MGRASGGFVLLGRILMSCF------TPNMVT--------FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF----N 62 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~------~~~~~~--------~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~ 62 (325)
+|++.+|+++++...+.|. ..+..- --.|.-.+-..|+.++|..++....+.. .+|.... |
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~N 266 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVN 266 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhc
Confidence 4889999999998833221 111111 1224445667899999999999998874 3343222 2
Q ss_pred HHH----------HHHHHHHHHHHHhc--------CCccCccHHH-HHHHHHHHHhcCc-h--hhcCCCCC--hhhHHHH
Q 048780 63 TLA----------LVALNLFEEMVNEF--------GVICKPDVVT-CTNIIDGLCKDGF-M--MDQGMRPD--VVTLNVM 118 (325)
Q Consensus 63 ~l~----------~~a~~~~~~~~~~~--------~~~~~~~~~~-~~~ll~~~~~~~~-~--~~~~~~~~--~~~~~~l 118 (325)
.++ ...+..++...... .. -+..... -+.++..|...++ . .....++. ...+.++
T Consensus 267 NLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l 345 (652)
T KOG2376|consen 267 NLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL 345 (652)
T ss_pred chhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH
Confidence 221 12222222211110 00 0111222 2334444444444 1 11122221 2334445
Q ss_pred HHHHHcc--CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH----
Q 048780 119 TDNLSKD--GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR---- 192 (325)
Q Consensus 119 l~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~---- 192 (325)
+..+.+. ....++.+++...-+. .|.. ...+--.+++.....|+++.|.+++.
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~--~p~~-------------------s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADG--HPEK-------------------SKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcc--CCch-------------------hHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 4444332 2355666666554433 2211 24455567788889999999999999
Q ss_pred ----HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCcCHH----HHHHHH
Q 048780 193 ----EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH--KCVLTIE----TCNCLI 262 (325)
Q Consensus 193 ----~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~----~~~~ll 262 (325)
.+.+.+.. +.+...+...+.+.++.+.|..++.+.... ...+... ++.-+.
T Consensus 405 ~~~ss~~~~~~~-------------------P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 405 SWKSSILEAKHL-------------------PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hhhhhhhhhccC-------------------hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 44443333 344455566677777766666666555331 0111222 333334
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
..-.+.|+-++|..+++++.+.. .+|..+...++.+|++. +++.|..+-+.+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n--~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN--PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC--CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 44456789999999999987323 67888888899998886 667777665543
No 171
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.11 Score=47.21 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
|....-.+.+.|-..|++.+|...|.+.+
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45556667778888888888888887664
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.01 E-value=0.15 Score=42.08 Aligned_cols=106 Identities=19% Similarity=0.074 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
+.+..|.-+...|+...|.++-.+.+ .|+..-|...+.+++..+++++-.++...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---------------------v~dkrfw~lki~aLa~~~~w~eL~~fa~s---- 233 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---------------------VPDKRFWWLKIKALAENKDWDELEKFAKS---- 233 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---------------------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----
Confidence 34444566667777777777765553 35666777778888888888777765432
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHH
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
+-++.-|..++.+|.+.|+..+|..+...+. +..-+..|.+.|++.+|.+.
T Consensus 234 --kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 234 --KKSPIGYEPFVEACLKYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred --CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHH
Confidence 1244677788888888888877777766522 12335666666666666554
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.00 E-value=0.035 Score=45.13 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=55.6
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHhh----CCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC----CCCcHH-
Q 048780 224 TTYIDGLYKN-GFVLEAMKVFSAIGN----HKCVL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG----LTPDVV- 292 (325)
Q Consensus 224 ~~l~~~~~~~-~~~~~a~~~~~~m~~----~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~- 292 (325)
..+...|-.. |++++|.+.|++..+ .|..- -..++..+...+.+.|++++|.++|++.....- .+.+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3335556666 788888888776643 23111 133566677788888888888888887763221 122222
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 293 TYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.|...+-.+...||+..|.+.+++....
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2233344556678888888888877643
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.98 E-value=0.047 Score=37.72 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=68.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHH
Q 048780 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFC 302 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 302 (325)
+..++-..|+.++|+.++++....|.... ...+-.+-..+...|++++|..+++.......-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999886654 34677788899999999999999998874421101 2222233345778
Q ss_pred ccCChHHHHHHHHHHH
Q 048780 303 KEGQHQKANGLLLDME 318 (325)
Q Consensus 303 ~~g~~~~a~~~~~~m~ 318 (325)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999998876543
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.98 E-value=0.005 Score=37.33 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
...+...|++++|...|+...+.... +...+..+-.++...|++++|...|+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455556666666666666555422 45555555566666666666666666554
No 176
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.0093 Score=43.09 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh-
Q 048780 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG- 247 (325)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~- 247 (325)
.+...++..+...|++++|..+...+... .+-+...|..+|.+|...|+..+|.++|+.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~------------------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL------------------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------------------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566777888899999999999999986 35577889999999999999999999998874
Q ss_pred ----hCCCCcCHHHHH
Q 048780 248 ----NHKCVLTIETCN 259 (325)
Q Consensus 248 ----~~~~~~~~~~~~ 259 (325)
+.|+.|+..+-.
T Consensus 125 ~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 125 RLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHS----HHHHH
T ss_pred HHHHHhCcCcCHHHHH
Confidence 358889877643
No 177
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.90 E-value=0.052 Score=42.83 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=79.7
Q ss_pred chhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHh--CCCCCChHhHHHHHHHHHHcCCHHHH
Q 048780 167 DVYSYNILINGYCK-----DRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--NNVPPDSHVYTTYIDGLYKNGFVLEA 239 (325)
Q Consensus 167 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (325)
|..+|-+.+..+.. .++++-....++.|.+.|+.-|..+|..++... ..+.|.. .+-...--|-+ +-+-+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~n-vfQ~~F~HYP~--QQ~C~ 142 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQN-VFQKVFLHYPQ--QQNCA 142 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHH-HHHHHHhhCch--hhhHH
Confidence 55556666666543 477888888999999999999999999998732 2223322 22222222322 34568
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHh
Q 048780 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL-KIAWDIFHMLM 282 (325)
Q Consensus 240 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 282 (325)
.+++++|...|+.||..+-..|+.+|.+.+-. .+..++.-.|.
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999999988853 34555555554
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.88 E-value=0.12 Score=45.71 Aligned_cols=138 Identities=10% Similarity=0.030 Sum_probs=94.2
Q ss_pred CCCCCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc---
Q 048780 162 KGCRHDVYSYNILINGYCKD-----RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN--- 233 (325)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~--- 233 (325)
...+.+...|...+++.... ++.+.|..+|++..+.. |+ ....|..+..++...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~----------------~a~a~A~la~~~~~~~~~ 392 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PD----------------FTYAQAEKALADIVRHSQ 392 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CC----------------cHHHHHHHHHHHHHHHhc
Confidence 34556778999999885542 23779999999998862 22 233444433333221
Q ss_pred -----CCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCCh
Q 048780 234 -----GFVLEAMKVFSAIGNH-KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 234 -----~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (325)
.+...+.+..+..... ....+...|..+--.....|++++|...+++.. .. .|+...|..+-..+...|+.
T Consensus 393 ~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L--~ps~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 393 QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DL--EMSWLNYVLLGKVYELKGDN 469 (517)
T ss_pred CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc--CCCHHHHHHHHHHHHHcCCH
Confidence 1223444444433332 223456778877777777899999999999988 33 57888999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 048780 308 QKANGLLLDMEET 320 (325)
Q Consensus 308 ~~a~~~~~~m~~~ 320 (325)
++|.+.+++....
T Consensus 470 ~eA~~~~~~A~~L 482 (517)
T PRK10153 470 RLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886543
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.08 Score=36.58 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCC
Q 048780 121 NLSKDGKMEEANCLLEVMIQRDVN 144 (325)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~g~~ 144 (325)
++-..|+.++|+.+|+.....|..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~ 33 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLS 33 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCC
Confidence 344445555555555555555443
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.84 E-value=0.21 Score=41.23 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=70.3
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
.+.+.-|.-+...|+...|.++-++.+ .|+..-|...+.+++..++|++..++-.. +-++.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHH
Confidence 345555788888999999988877664 47999999999999999999988875432 2245789999999
Q ss_pred HHccCChHHHHHHHHHH
Q 048780 301 FCKEGQHQKANGLLLDM 317 (325)
Q Consensus 301 ~~~~g~~~~a~~~~~~m 317 (325)
|.+.|...+|..+...+
T Consensus 247 ~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 99999999999988774
No 181
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.83 E-value=0.51 Score=45.47 Aligned_cols=178 Identities=12% Similarity=0.006 Sum_probs=103.8
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
.+..+...+...|+++.|...+++.....-.... .........+..+...+...|++++|...+.+
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL--------------EQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc--------------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4445556667778888888877765542100000 00000122344455667778999999999988
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc-CHHHH-----HHHHHHHHh
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL-TIETC-----NCLIDGLCK 267 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~-----~~ll~~~~~ 267 (325)
.....-.... ......+..+...+...|+.++|.+.+.......... ....+ ...+..+..
T Consensus 599 al~~~~~~~~-------------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 599 GLEVLSNYQP-------------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hHHhhhccCc-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 7653111000 0012334456677888999999999988875421110 11111 112344556
Q ss_pred cCChHHHHHHHHHHhhCCCCCCc---HHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 268 IGRLKIAWDIFHMLMQNPGLTPD---VVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.|+.+.|...+.... ....... ...+..+..++...|+.++|...+++...
T Consensus 666 ~g~~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 666 TGDKEAAANWLRQAP-KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred CCCHHHHHHHHHhcC-CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999987755 2111111 11234566778899999999999988764
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.80 E-value=0.053 Score=43.38 Aligned_cols=100 Identities=12% Similarity=-0.033 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CcHHhHHHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL--TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT-PDVVTYNIM 297 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l 297 (325)
..|...+....+.|++++|...|+.+.+.-... ....+-.+..+|...|++++|...|+.+.+...-. .....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 345555655567799999999999998754221 13577788899999999999999999998543221 124455556
Q ss_pred HHHHHccCChHHHHHHHHHHHHc
Q 048780 298 IHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
...+...|+.++|.++++++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 67788999999999999998764
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.80 E-value=0.014 Score=35.87 Aligned_cols=65 Identities=25% Similarity=0.240 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC-CHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR-NVEDAVS 189 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~ 189 (325)
++..|..+-..+...|++++|+..|++..+.. |+ +...|..+-.+|...| ++++|.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~--------------------~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PN--------------------NAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TT--------------------HHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC--------------------CHHHHHHHHHHHHHhCccHHHHHH
Confidence 45678888999999999999999999998863 43 6778888999999999 7999999
Q ss_pred HHHHHHHc
Q 048780 190 LCREMLSE 197 (325)
Q Consensus 190 ~~~~m~~~ 197 (325)
.++...+.
T Consensus 60 ~~~~al~l 67 (69)
T PF13414_consen 60 DFEKALKL 67 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99987753
No 184
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.32 Score=41.99 Aligned_cols=200 Identities=14% Similarity=0.043 Sum_probs=121.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh--------------hcCCCCCchhhHHH-------
Q 048780 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNI------- 173 (325)
Q Consensus 115 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--------------~~~~~~~~~~~~~~------- 173 (325)
...+.+...+..+++.|.+-+....+.. -+..-++..-.++.. .+.+. -...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 4566677777788888888888777664 222222222222322 00000 00111222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-------HhCCCCCChHh-HHHHHHHHHHcCCHHHHHHHHHH
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM-------AINNVPPDSHV-YTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-------~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
+-.+|.+.++++.+...|.+....-..|+..+-..... ...-+.|.... .-.=-..+.+.|++..|...+.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 33366777889999999998777665665555444443 11112222110 11114557789999999999999
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 246 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+.... +-|...|..-..+|.+.|.+..|++=.+...+.. ++....|..=..++....++++|.+.|++-.+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98877 4478899999999999999999988777666321 223333433344445556788888877776543
No 185
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.71 E-value=0.25 Score=40.30 Aligned_cols=178 Identities=11% Similarity=0.028 Sum_probs=97.1
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 109 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
+.|...|..-..+|...|++..|..=+....+. ..| +...+--+-..+-..|+.+.++
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~D--------------------nTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQD--------------------NTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccc--------------------chHHHHHHHHHHHhhhhHHHHH
Confidence 446777777777888888887777555444332 221 3444444556666777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHH--HHHHHHcCCHHHHHHHHHHHhhCCCCcCH---HHHHHHHH
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY--IDGLYKNGFVLEAMKVFSAIGNHKCVLTI---ETCNCLID 263 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~ 263 (325)
...++.++.+ ||....-....... .+.-+| +......+++-++++..+...+....-.. ..+..+-.
T Consensus 244 ~~iRECLKld--pdHK~Cf~~YKklk------Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 244 KEIRECLKLD--PDHKLCFPFYKKLK------KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHccC--cchhhHHHHHHHHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 7777776532 22111100000000 000001 23344566677777766666554322122 23445556
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCc-HHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 264 GLCKIGRLKIAWDIFHMLMQNPGLTPD-VVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
++...|++.+|+....+.. .+.|+ ..++--=..+|.-...++.|..=|+...+
T Consensus 316 C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 6667777888887777765 23444 55555556667666677777666665543
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.70 E-value=0.013 Score=35.98 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=37.6
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHh
Q 048780 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG-RLKIAWDIFHMLM 282 (325)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~ 282 (325)
..+|..+...+...|++++|+..|++..+.... +...|..+-.+|...| ++++|.+.++...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 345555566666666666666666666555422 4556666666666666 5666666666544
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.68 E-value=0.23 Score=39.37 Aligned_cols=186 Identities=12% Similarity=0.105 Sum_probs=108.8
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...+-.....+...|++++|.+.|+.+... .|+.. .-....-.+..+|.+.+++++|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~-----------------~a~~a~l~la~ayy~~~~y~~A~~~ 91 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGP-----------------YSQQVQLDLIYAYYKNADLPLAQAA 91 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCh-----------------HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444444556667789999999999999885 33210 0111223466788999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCC----------C---C---CC-------hHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 191 CREMLSEGIRADATTYNTLFMAINN----------V---P---PD-------SHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~----------~---~---~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
+++..+....-...-+......... . . .| ...+..++.-|-...-..+|...+..+.
T Consensus 92 ~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 92 IDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 9999886322211222111111000 0 0 00 0123333333333333334433333332
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+. .-.. --.+.+-|.+.|.+..|..-++.+.++.. .+........++.+|...|..++|..+...+..
T Consensus 172 ~~---la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 172 DR---LAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HH---HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 11 0001 12345668899999999999998885543 233456677888999999999999988776643
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.24 Score=39.62 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=99.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHH----HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 175 INGYCKDRNVEDAVSLCREMLSEG-IRADATTYNTLFM----AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
...|...|-++.+ +..+...- ..|+..+...++. .....+.|...|-.|-..|...|+++.|...|....+.
T Consensus 109 ~g~y~~vg~~~q~---~~r~~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 109 LGLYQAVGAPEQP---ADRLADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred hhhhhhcCCcccc---chhhhcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 3345555666665 33333332 2355555555554 33456778999999999999999999999999988775
Q ss_pred CCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 250 KCVLTIETCNCLIDGLCKIG---RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
. .+|+..+..+..++..+. ...++..+|+++.... .-|+.+...|-..+...|++.+|...|+.|.+.
T Consensus 186 ~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 186 A-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3 236666666666655443 4668999999988432 345666677778899999999999999999875
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.63 E-value=0.081 Score=42.31 Aligned_cols=102 Identities=12% Similarity=0.057 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...|...+..+.+.|++++|...|+.+.+.. |+. .-...++--+...|...|++++|...|+.+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s-------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDS-------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCC-------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4457777766677899999999999999862 211 0012456677889999999999999999997
Q ss_pred hCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 248 NHK--CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 248 ~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
+.- -......+-.+...+...|+.++|..+|+.+.+.
T Consensus 208 ~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 208 KNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 542 2223455556677788999999999999998844
No 190
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.51 Score=42.62 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
+.+--+.-+...|+-.+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.++
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk---------------------ipdKr~~wLk~~aLa~~~kweeLekfAkskk-- 742 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK---------------------IPDKRLWWLKLTALADIKKWEELEKFAKSKK-- 742 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC---------------------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--
Confidence 44455566667788888887776654 4577777777999999999998888776654
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHH
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
.+.-|..++.+|.+.|+.++|.+++.... |.. -...+|.+.|++.+|.++--
T Consensus 743 ----sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 ----SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ----CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 35568889999999999999999887654 111 45778888888888776543
No 191
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.61 E-value=0.014 Score=36.32 Aligned_cols=56 Identities=14% Similarity=0.005 Sum_probs=45.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
-..|.+.+++++|.++++.+...+.. +...+...-.++.+.|++++|.+.|+...+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35678889999999999988877533 677788888888999999999999988873
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.58 E-value=0.018 Score=35.82 Aligned_cols=51 Identities=16% Similarity=0.048 Sum_probs=45.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
+++++.|++.++.+...+ +.++..|......+.+.|++++|.+.|+...+.
T Consensus 8 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 8 QEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 478999999999999886 568888888999999999999999999999876
No 193
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.53 E-value=0.028 Score=44.25 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=60.1
Q ss_pred CCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCchhHHHHH-------------------------HHHH
Q 048780 20 TPNMVTFNSLIKGLCTE-----GRILEAARLFKKLNVFCCDPNVITFNTLA-------------------------LVAL 69 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-------------------------~~a~ 69 (325)
+.|..+|-+.+..+... +.++=.-..++.|.+.|+..|..+|+.|+ ..++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 56778888888888654 55676777889999999999999999998 5567
Q ss_pred HHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
+++++|...| +-||-.+-..|+.++.+.+.
T Consensus 144 ~vLeqME~hG---VmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHG---VMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcC---CCCchHHHHHHHHHhccccc
Confidence 7777777766 66666666666666655554
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.38 E-value=0.89 Score=42.68 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
..|..|-..|....+...|.+.|+...+.. ++ +...+......|++..+++.|..+.-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--at--------------------daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD--AT--------------------DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ch--------------------hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 467888888888888888999998876652 22 66778888899999999999988832
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
.--+.. ..-...+ -|--.--.|.+.++...|..-|+...+...+ |...|..+..+|..+|++.
T Consensus 551 ~~~qka-~a~~~k~---------------nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKE---------------NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHhhhc-hHHHHHh---------------hhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCcee
Confidence 221110 0000001 1111223355667777777777777666543 6677777888888888888
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHHHHH--HHccCChHHHHHHHHHHH
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHG--FCKEGQHQKANGLLLDME 318 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~ 318 (325)
.|.++|.+... +.|+ .+|.....+ -+..|++++|...++...
T Consensus 614 ~AlKvF~kAs~---LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 614 HALKVFTKASL---LRPL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHhhhhhHh---cCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888876552 2443 233333332 244567777777666654
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.35 E-value=0.11 Score=41.39 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=68.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHccCC
Q 048780 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 306 (325)
.-..+.+++.+|++.|.+....... |.+-|..=..+|++.|.++.|.+-.+... . +.| ...+|..|-.+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESAL-S--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHH-h--cChHHHHHHHHHHHHHHccCc
Confidence 3456778899999999888876533 77778888888999999988888777655 2 233 35788888889999999
Q ss_pred hHHHHHHHHHHHH
Q 048780 307 HQKANGLLLDMEE 319 (325)
Q Consensus 307 ~~~a~~~~~~m~~ 319 (325)
+++|.+.|+.-.+
T Consensus 165 ~~~A~~aykKaLe 177 (304)
T KOG0553|consen 165 YEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHHHhhhc
Confidence 9999988877654
No 196
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.31 E-value=0.98 Score=42.43 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=43.7
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
++..+|+.-|+...+.. +.|...|..+..+|.++|++..|..+|.+....
T Consensus 576 ~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred cchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 56778888888888776 678899999999999999999999999888754
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.31 E-value=0.022 Score=35.93 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHhhcCCCCC-chhhHHHHHHHHHhcCCHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV-NPNTCTYNTLMDGFAWWSKGCRH-DVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
..+|+.+-..|...|++++|++.|++..+..- .++. .| ...+++.+-.+|...|++++|++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----------------~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD-----------------HPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH-----------------HHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35788899999999999999999998876510 1110 11 25578889999999999999999
Q ss_pred HHHHHHH
Q 048780 190 LCREMLS 196 (325)
Q Consensus 190 ~~~~m~~ 196 (325)
++++..+
T Consensus 68 ~~~~al~ 74 (78)
T PF13424_consen 68 YYQKALD 74 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988654
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.029 Score=35.37 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHhCCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHH
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEG--IRADATTYNTLFMAINNVPP-DSHVYTTYIDGLYKNGFVLEAMKVFS 244 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (325)
..+|+.+-..|...|++++|+..|++..+.. ..++ .| ...++..+..++...|++++|++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------------HPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------------HHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4578889999999999999999999887641 1110 11 14567888999999999999999998
Q ss_pred HHh
Q 048780 245 AIG 247 (325)
Q Consensus 245 ~m~ 247 (325)
+..
T Consensus 71 ~al 73 (78)
T PF13424_consen 71 KAL 73 (78)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.1 Score=41.13 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcH-HhHHHHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKC--VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV-VTYNIMI 298 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 298 (325)
.|+..+..+. .|++..|.+.|....+... .-....+-.|..++...|+++.|..+|..+.+..+-.|-. .+.--|-
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5777666554 5779999999999887532 2234567778999999999999999999998766554443 6677778
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 048780 299 HGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8889999999999999998764
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.22 E-value=0.16 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=13.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 048780 297 MIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.-.||.++|+-.+|.++++++..
T Consensus 823 AqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 823 AQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhcchHHHHHHHHHhhh
Confidence 34455566666666666665543
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.03 E-value=0.57 Score=37.13 Aligned_cols=145 Identities=11% Similarity=0.099 Sum_probs=84.9
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCC------------CCCc-------hhhHHHHHHH
Q 048780 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG------------CRHD-------VYSYNILING 177 (325)
Q Consensus 117 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~------------~~~~-------~~~~~~li~~ 177 (325)
.+..++.+.+++++|...+++..+.-..-...-+...+.+.+....+ ...| ...+..+|.-
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 46678889999999999999998874332222333333333210000 0000 0123333333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCcCH
Q 048780 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH--KCVLTI 255 (325)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~ 255 (325)
|=...-..+|...+..++.. -...--.+.+-|.+.|.+..|..-++.+.+. +.+...
T Consensus 154 yP~S~ya~~A~~rl~~l~~~---------------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ 212 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDR---------------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATR 212 (243)
T ss_pred CcCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHH
Confidence 33333333333333333221 0000113456688999999999999988764 444556
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 256 ETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.....+..+|.+.|..++|......+.
T Consensus 213 eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 213 DALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 678889999999999999998877654
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.95 E-value=0.53 Score=36.15 Aligned_cols=174 Identities=22% Similarity=0.250 Sum_probs=94.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048780 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194 (325)
Q Consensus 115 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 194 (325)
.-.....+...|++.+|.+.|+.+...- |+. +......-.+..++-+.|+++.|...++++
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s-----------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY--PNS-----------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTS-----------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCC-----------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344556778899999999999998762 211 113344556788999999999999999998
Q ss_pred HHcCCCCChhhHHHHHH------HhCCC---CCC-------hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 048780 195 LSEGIRADATTYNTLFM------AINNV---PPD-------SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258 (325)
Q Consensus 195 ~~~g~~~~~~~~~~ll~------~~~~~---~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 258 (325)
.+.-.......+...+. ...+. ..| ...+..++.-|-......+|...+..+.+. .- ..-
T Consensus 69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e 144 (203)
T PF13525_consen 69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHE 144 (203)
T ss_dssp HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHH
T ss_pred HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHH
Confidence 87632111111111111 00000 001 112333333333333333333333333211 00 011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHccCChHHHH
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKEGQHQKAN 311 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 311 (325)
-.+.+-|.+.|.+..|..-++.+.+...-.+ .......++.+|.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2246678899999999999999886542222 2356677888999999887543
No 203
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.87 E-value=0.3 Score=39.87 Aligned_cols=125 Identities=13% Similarity=0.187 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHH---------------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCch
Q 048780 39 ILEAARLFKKLNVFCCDPNVITFNTLA---------------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM 103 (325)
Q Consensus 39 ~~~a~~~~~~m~~~g~~~~~~~~~~l~---------------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 103 (325)
+++...+++.|.+.|++-+..+|-+.. ..+.++|+.|++.....-
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 567788999999999998888776643 678889999998763221
Q ss_pred hhcCCCCChhhHHHHHHHHHccCc----HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 048780 104 MDQGMRPDVVTLNVMTDNLSKDGK----MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179 (325)
Q Consensus 104 ~~~~~~~~~~~~~~ll~~~~~~g~----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~ 179 (325)
.++-..+..++.. ..++ .+.+..+|+.+...|+..+. +......++..+-
T Consensus 138 -----s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn-------------------~LQ~LS~iLaL~~ 191 (297)
T PF13170_consen 138 -----SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGN-------------------DLQFLSHILALSE 191 (297)
T ss_pred -----CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCc-------------------HHHHHHHHHHhcc
Confidence 2333444444443 3333 36788899999998887653 2333333333333
Q ss_pred hcCC--HHHHHHHHHHHHHcCCCCChhhHHHH
Q 048780 180 KDRN--VEDAVSLCREMLSEGIRADATTYNTL 209 (325)
Q Consensus 180 ~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~l 209 (325)
.... ...+.++++.+++.|+++....|..+
T Consensus 192 ~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 192 GDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred ccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2222 45889999999999988766665543
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.24 Score=38.89 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=75.8
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH--------------HHH
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------------LVA 68 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~--------------~~a 68 (325)
.+.-.++++........+.++.....|.+.-.+.|+.+.|...|+...+..-+.|..+++.++ ..+
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence 344456667777776666777788888888888899999998888887765567777777766 222
Q ss_pred HHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcc
Q 048780 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 148 (325)
...|+++.... ..|+..-|.=.-+..-.|+..+|++..+.|++. .|...
T Consensus 272 ~r~~~~i~~~D-----------------------------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~ 320 (366)
T KOG2796|consen 272 HRFFTEILRMD-----------------------------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHY 320 (366)
T ss_pred HHHHhhccccC-----------------------------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccc
Confidence 33333333222 112223333333444568999999999999987 44444
Q ss_pred cHH
Q 048780 149 TYN 151 (325)
Q Consensus 149 ~~~ 151 (325)
+-+
T Consensus 321 l~e 323 (366)
T KOG2796|consen 321 LHE 323 (366)
T ss_pred hhh
Confidence 333
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.80 E-value=0.28 Score=41.90 Aligned_cols=65 Identities=12% Similarity=-0.039 Sum_probs=56.5
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI----ETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
+.+...|+.+-.+|...|++++|+..|++..+.. |+. .+|..+-.+|.+.|+.++|...++...+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999999987764 453 4699999999999999999999998873
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.79 E-value=1.2 Score=39.11 Aligned_cols=169 Identities=17% Similarity=0.100 Sum_probs=108.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh----cCCHHHHHHH
Q 048780 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK----DRNVEDAVSL 190 (325)
Q Consensus 115 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~ 190 (325)
+..+++..+=.||-+.+++.+.+..+.+ +...--+.+ ..-.|..++..++. ..+.+.|.++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~---~i~~~la~L------------~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSE---NIRSPLAAL------------VLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccC---CcchHHHHH------------HHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 3456677777899999999888765432 111111110 12345555555544 4568899999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHH-HHHHHHHcCCHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHHH
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT-YIDGLYKNGFVLEAMKVFSAIGNHK---CVLTIETCNCLIDGLC 266 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~ 266 (325)
+..+.+. -|+...|.- --+.+...|++++|.+.|+...... .+.....+--+...+.
T Consensus 256 L~~~~~~-------------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 256 LEEMLKR-------------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred HHHHHHh-------------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 9999886 233333322 2455677899999999999765321 1123344555677788
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH-HccCCh-------HHHHHHHHHHHH
Q 048780 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF-CKEGQH-------QKANGLLLDMEE 319 (325)
Q Consensus 267 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~-------~~a~~~~~~m~~ 319 (325)
..++|++|.+.|..+.+.... +..+|..+..+| ...|+. ++|.+++++...
T Consensus 317 ~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 899999999999999854433 455555555543 556777 888888887653
No 207
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.69 E-value=0.2 Score=40.04 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=69.5
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCCcHHhHH
Q 048780 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ----NPGLTPDVVTYN 295 (325)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 295 (325)
..+++.++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456777889999999999999999998877 44899999999999999999999999988753 579999998887
Q ss_pred HHHHHH
Q 048780 296 IMIHGF 301 (325)
Q Consensus 296 ~li~~~ 301 (325)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 777764
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=95.58 E-value=0.28 Score=35.69 Aligned_cols=90 Identities=13% Similarity=-0.015 Sum_probs=69.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
..-+-..|++++|..+|+-+.-.+.. +..-|..|-.+|-..+++++|...|.... ..+ .-|+..+-..-.+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~-~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAF-TLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-cCCCCccchHHHHHHHhCC
Confidence 33455789999999999998776543 66667778888888899999999998765 222 2345556677888999999
Q ss_pred hHHHHHHHHHHHH
Q 048780 307 HQKANGLLLDMEE 319 (325)
Q Consensus 307 ~~~a~~~~~~m~~ 319 (325)
.+.|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887765
No 209
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.55 E-value=0.64 Score=34.15 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccH
Q 048780 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDV 87 (325)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~ 87 (325)
.+.+..+.+.+++|+...|..++..+.+.|++... ..+.+.++-+|.......+ ...+ ..++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~L----------Ls~~----~~~~ 75 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQL----------LSLG----NQYP 75 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHH----------HHhH----ccCh
Confidence 46677778889999999999999999999987654 4455666677766655444 0000 0011
Q ss_pred HHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCc
Q 048780 88 VTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167 (325)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~ 167 (325)
.++..-++.+.+.+ ..+..++..+...|++-+|+++.+..... +
T Consensus 76 ~~~Ql~lDMLkRL~-----------~~~~~iievLL~~g~vl~ALr~ar~~~~~-------------------------~ 119 (167)
T PF07035_consen 76 PAYQLGLDMLKRLG-----------TAYEEIIEVLLSKGQVLEALRYARQYHKV-------------------------D 119 (167)
T ss_pred HHHHHHHHHHHHhh-----------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-------------------------c
Confidence 11222222221111 14566778889999999999988764322 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEG 198 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 198 (325)
......++.+-.+.++...-..+|+-..+.+
T Consensus 120 ~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 120 SVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred cCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2223456777777777776666666666543
No 210
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.53 E-value=0.25 Score=42.81 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=48.1
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|...|+.++..++.+... ..| -++..+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~-~~~------~~n~af 409 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE-ERG------DINIAF 409 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH-HTT-------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH-Hcc------CHHHHH
Confidence 445666667777777777777777776542 4556666666777766666665544 221 144455
Q ss_pred HHHHccCChHHHHHHHHH
Q 048780 299 HGFCKEGQHQKANGLLLD 316 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~ 316 (325)
.++.-.|+.++..+++.+
T Consensus 410 ~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 555555666666666544
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.47 E-value=2.2 Score=39.67 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChHH---HHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048780 259 NCLIDGLCKIGRLKI---AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 322 (325)
+.|+..|-+.++... |.-+++.-.... +.|..+=-.+|+.|.-.|-...|.++++.+.-..|
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 456667777776553 333333322121 22333334566667666777777777766644433
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.43 E-value=0.34 Score=42.00 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=89.9
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 198 (325)
.....-.++++++.++.+. ..+.|.. +....+.++.-+-+.|.++.|+++...-..+
T Consensus 268 fk~av~~~d~~~v~~~i~~---~~ll~~i-------------------~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r- 324 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAA---SNLLPNI-------------------PKDQGQSIARFLEKKGYPELALQFVTDPDHR- 324 (443)
T ss_dssp HHHHHHTT-HHH-----HH---HHTGGG---------------------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-
T ss_pred HHHHHHcCChhhhhhhhhh---hhhcccC-------------------ChhHHHHHHHHHHHCCCHHHHHhhcCChHHH-
Confidence 3455567888887777641 1111211 3445788888899999999999998877665
Q ss_pred CCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 048780 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278 (325)
Q Consensus 199 ~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (325)
.....+.|+++.|.++.++. .+...|..|-....+.|+++-|++.|
T Consensus 325 ----------------------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 325 ----------------------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp ----------------------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred ----------------------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77788999999999886543 37779999999999999999999999
Q ss_pred HHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+.. | |..|+--|.-.|+.+...++.+.....
T Consensus 371 ~k~~-------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 371 QKAK-------D---FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred Hhhc-------C---ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8865 2 445555666667766666665554443
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.41 E-value=0.57 Score=32.66 Aligned_cols=68 Identities=24% Similarity=0.233 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 323 (325)
+...+...+....++|.-+...++...+.+ +-++++...-.+..||.+.|+..++.+++++..+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556677778888888888888888763 33667777778888899999998999998888888863
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.38 E-value=1.4 Score=39.86 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=31.9
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
++.+....-.+.+++.+.|.-++|.+.+-+... | ...+..|...++|.+|.++-+..
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555566666666666666666665533211 1 13355566666666666665543
No 215
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.32 E-value=1.3 Score=37.91 Aligned_cols=146 Identities=15% Similarity=0.164 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
..|...|+.-.+..-++.|..+|-+..+.|+.. +++.+++++|..++ .|+..-|..+|+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~--------------------h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG--------------------HHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC--------------------cceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 456677777777788888888888888777332 36667777777665 466777888887
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCC
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGR 270 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~ 270 (325)
.=... ++.+..--+..+.-+...++-+.|..+|+.-... +..+ ..+|..+|.-=..-|+
T Consensus 457 lGl~~------------------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 457 LGLLK------------------FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHHHh------------------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc
Confidence 65543 2222333345566777788888888888743321 1112 4578888888888888
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 301 (325)
...+..+=+.|... -|-..+......-|
T Consensus 518 lN~v~sLe~rf~e~---~pQen~~evF~Sry 545 (660)
T COG5107 518 LNNVYSLEERFREL---VPQENLIEVFTSRY 545 (660)
T ss_pred hHHHHhHHHHHHHH---cCcHhHHHHHHHHH
Confidence 88887777766532 34444444444434
No 216
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.28 E-value=1.2 Score=35.72 Aligned_cols=100 Identities=23% Similarity=0.192 Sum_probs=65.3
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048780 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200 (325)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 200 (325)
-+.+.+++.+|+..|.+..+. .|. |.+.|..-..+|++.|.++.|++-.+......
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~--------------------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-- 145 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPT--------------------NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-- 145 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCC--------------------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--
Confidence 345566777777777776654 332 66667777777777777777777666665531
Q ss_pred CChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 201 ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
+....+|..|-.+|...|++++|++.|+...+. .|+-.+|-.=+
T Consensus 146 ----------------p~yskay~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 146 ----------------PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred ----------------hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 224567777777777777787777777766543 45555554433
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.19 E-value=1.8 Score=37.17 Aligned_cols=65 Identities=12% Similarity=-0.035 Sum_probs=55.6
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCCh----HhHHHHHHHHHHcCCHHHHHH
Q 048780 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS----HVYTTYIDGLYKNGFVLEAMK 241 (325)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 241 (325)
.+...++.+-.+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------------------~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------------------NPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35678999999999999999999999998875 3332 358888999999999999999
Q ss_pred HHHHHhhC
Q 048780 242 VFSAIGNH 249 (325)
Q Consensus 242 ~~~~m~~~ 249 (325)
.+++..+.
T Consensus 134 ~LrrALel 141 (453)
T PLN03098 134 CLRTALRD 141 (453)
T ss_pred HHHHHHHh
Confidence 99988764
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=1.4 Score=34.90 Aligned_cols=30 Identities=7% Similarity=-0.085 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
++.....+.+.--+.|+.+.|...|+...+
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344444455555555555555555555443
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.03 E-value=1.5 Score=35.54 Aligned_cols=177 Identities=12% Similarity=0.043 Sum_probs=106.6
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE---- 197 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 197 (325)
..+.|+.+.|..++.+........+......+ ....|+.-...+.+..+++.|...+++..+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~L-------------a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~ 69 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEEL-------------ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP 69 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHH-------------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh
Confidence 45789999999999988765422222222222 3445777666666665888887777765543
Q ss_pred C-CCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHH---HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHH
Q 048780 198 G-IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL---EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273 (325)
Q Consensus 198 g-~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 273 (325)
+ .......+..+ ...++..++.+|...+..+ +|.++++.+...... .+.++..-+..+.+.++.+.
T Consensus 70 ~~~~~~~~~~~el---------r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 70 GKMDKLSPDGSEL---------RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred hhccccCCcHHHH---------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhH
Confidence 1 11221122111 2345677788888877654 566677777554322 24556566777777899999
Q ss_pred HHHHHHHHhhCCCCCCcHHhHHHHHHHH---HccCChHHHHHHHHHHHHcCCCC
Q 048780 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGF---CKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 274 a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
+.+.+..|....+. ....+..++..+ ... ..+.|...+..+....+.|
T Consensus 140 ~~~~L~~mi~~~~~--~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 140 YEEILMRMIRSVDH--SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHHHHhccc--ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCC
Confidence 99999999855431 234455555544 433 3456667776666554433
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.00 E-value=1.7 Score=37.68 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=75.6
Q ss_pred hcCCHHHHHHHHHHHHHcC---CCCChhhHH--HHH--HHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC-C
Q 048780 180 KDRNVEDAVSLCREMLSEG---IRADATTYN--TLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK-C 251 (325)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~g---~~~~~~~~~--~ll--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~ 251 (325)
....+.+|.++|++..+.| +..+....+ ..- ...+...+-..+-..+..++.+.|+.++|.+.+++|.+.. .
T Consensus 212 eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 212 EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 3455788888888877654 222111110 000 0011111223334456777788999999999999997643 2
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc--HHhHHHHHHHHHccCC
Q 048780 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD--VVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 252 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~ 306 (325)
.-+..+...|+.++...+.+.++..++.+.. +.. -|. ..+|+..+-.+...++
T Consensus 292 ~~~l~IrenLie~LLelq~Yad~q~lL~kYd-Di~-lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 292 LDNLNIRENLIEALLELQAYADVQALLAKYD-DIS-LPKSATICYTAALLKARAVGD 346 (539)
T ss_pred cchhhHHHHHHHHHHhcCCHHHHHHHHHHhc-ccc-CCchHHHHHHHHHHHHHhhcc
Confidence 2345588899999999999999999999865 322 233 3455554443333333
No 221
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.72 E-value=0.64 Score=30.33 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 048780 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEE 74 (325)
Q Consensus 7 A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~ 74 (325)
+.+-+..+...++-|++.+..+.+++|.|..++..|.++|+-.+... ..+...|..++++....+++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqeikp~l~E 92 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQEIKPTLKE 92 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHHHhHHHHH
Confidence 44555666777889999999999999999999999999999887432 22455788777555554444
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=94.69 E-value=0.5 Score=34.45 Aligned_cols=88 Identities=6% Similarity=-0.063 Sum_probs=68.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHH
Q 048780 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256 (325)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 256 (325)
-+-..|++++|..+|.-+.-.+ +-+..-|..|..++-..+++++|...|......+. -|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d------------------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~ 106 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD------------------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYR 106 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCC
Confidence 3457899999999999887653 22445567778888889999999999987755543 2555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
.+-..-.+|...|+.+.|...|+....
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 566677889999999999999998873
No 223
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.68 E-value=1.3 Score=33.03 Aligned_cols=61 Identities=15% Similarity=0.012 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..-.|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++.+.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 3333444444444444444444444333233344444444444444444444444444443
No 224
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.68 E-value=0.65 Score=37.28 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
..++..++..+...|+.+.+...++++... .+-+...|..+|.+|.+.|+...|+..++.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~------------------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL------------------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc------------------CccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 346777899999999999999999999886 35577889999999999999999999998875
Q ss_pred h-----CCCCcCHHHHHHHHHH
Q 048780 248 N-----HKCVLTIETCNCLIDG 264 (325)
Q Consensus 248 ~-----~~~~~~~~~~~~ll~~ 264 (325)
+ .|+.|...+.......
T Consensus 215 ~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 215 KTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHhhhhcCCCccHHHHHHHHHH
Confidence 5 6899988887777666
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.63 E-value=1.5 Score=33.61 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCCcchHHHHHHHHHhcCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH-HHHHHHHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCF--TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF-NTLALVALNLFEEMVN 77 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~l~~~a~~~~~~~~~ 77 (325)
.|++++|++.|+.+...-. +--....-.+..++-+.|+++.|...|++..+. -|+.... ..+...+...+.....
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHhCcc
Confidence 4888999999999887621 223345666788888899999999999998765 3332221 1222233333333222
Q ss_pred hcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048780 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157 (325)
Q Consensus 78 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 157 (325)
.. ....|....... ...+..++.-|=.+.-..+|...+..+...
T Consensus 96 ~~--~~~~D~~~~~~A------------------~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---------------- 139 (203)
T PF13525_consen 96 IL--RSDRDQTSTRKA------------------IEEFEELIKRYPNSEYAEEAKKRLAELRNR---------------- 139 (203)
T ss_dssp HH---TT---HHHHHH------------------HHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----------------
T ss_pred ch--hcccChHHHHHH------------------HHHHHHHHHHCcCchHHHHHHHHHHHHHHH----------------
Confidence 10 012222211111 234566677777777777776666555432
Q ss_pred HhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHH
Q 048780 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237 (325)
Q Consensus 158 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (325)
=...--.+..-|.+.|.+..|..-++.+.+.- |+... .......++.+|.+.|..+
T Consensus 140 ---------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~-------------~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 140 ---------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY--PDTPA-------------AEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp ---------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS--TTSHH-------------HHHHHHHHHHHHHHTT-HH
T ss_pred ---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCCch-------------HHHHHHHHHHHHHHhCChH
Confidence 11112225677899999999999999998862 21111 1234566678888888777
Q ss_pred HHH
Q 048780 238 EAM 240 (325)
Q Consensus 238 ~a~ 240 (325)
.+.
T Consensus 196 ~a~ 198 (203)
T PF13525_consen 196 AAD 198 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 226
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.41 E-value=1.5 Score=32.68 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=90.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q 048780 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244 (325)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (325)
.|+...--.|-.+..+.|+..+|...|++-.. |+ ...|....-.+.++....+++..|...++
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~----------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GI----------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cc----------------cCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34666667788899999999999999999875 32 33466666677888999999999999998
Q ss_pred HHhhCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHH
Q 048780 245 AIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 245 ~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (325)
.+-+.. -.-++.+.-.+-+.+...|....|+.-|+... +. -|+...-...-.-+.+.|+.+++..
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~-~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAI-SY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHH-Hh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 886643 11123345567788999999999999999887 33 4554433333444566665555443
No 227
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.39 E-value=1.6 Score=32.70 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...+..+...|++.|+.++|.+.|.++.+....+ ..-...+-.+|+.....+++..+...+.+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSP---------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3467788999999999999999999998864332 2223456677888899999999888887664
Q ss_pred hC---CCCcCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 248 NH---KCVLTIE----TCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 248 ~~---~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
.. |-.++.. .|..+. +...+++..|-+.|-.....
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~--~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLA--NLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHH--HHHhchHHHHHHHHHccCcC
Confidence 42 2222222 222222 33568999998888776533
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=2.7 Score=35.33 Aligned_cols=134 Identities=13% Similarity=0.014 Sum_probs=91.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 048780 176 NGYCKDRNVEDAVSLCREMLSE---GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252 (325)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 252 (325)
..|.+.|++..|...|+..... .-..+...-... ...-..++..+..+|.+.+++.+|++.-+.....+ +
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~------~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~ 288 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKA------EALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-P 288 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHH------HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-C
Confidence 4678899999999999886542 000111111111 12234567888999999999999999999888876 4
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcH-HhHHHHHHHHHccCChH-HHHHHHHHHHH
Q 048780 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV-VTYNIMIHGFCKEGQHQ-KANGLLLDMEE 319 (325)
Q Consensus 253 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~-~a~~~~~~m~~ 319 (325)
+|....-.=-.+|...|+++.|+..|+++.+. .|+- ..-+.|+..--+..+.. +..++|..|-.
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57777777788999999999999999998843 4544 34444444444444443 44677777754
No 229
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.34 E-value=2.5 Score=34.83 Aligned_cols=246 Identities=12% Similarity=0.091 Sum_probs=143.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcC
Q 048780 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101 (325)
Q Consensus 22 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 101 (325)
++.-.--+-..+...|++..|+.-|.... ..|+..|..+...|.-.+---+. ++-..-+..++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAv----e~dp~~Y~aifrRaT~yLAmGks------k~al~Dl~rVl------- 99 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAV----EGDPNNYQAIFRRATVYLAMGKS------KAALQDLSRVL------- 99 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhcCC------ccchhhHHHHH-------
Confidence 44444456666777788888888887776 44667777766443332221111 11112222221
Q ss_pred chhhcCCCCChhhH-HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhh--HHHHHHHH
Q 048780 102 FMMDQGMRPDVVTL-NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS--YNILINGY 178 (325)
Q Consensus 102 ~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~--~~~li~~~ 178 (325)
..+||-..- ----..+.+.|.++.|..=|+...+.. |+..+-.-.-+- ..+.... ....+..+
T Consensus 100 -----elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqsk-------l~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 100 -----ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSK-------LALIQEHWVLVQQLKSA 165 (504)
T ss_pred -----hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHH-------HHhHHHHHHHHHHHHHH
Confidence 124442211 111235678999999999999988773 332221111000 0111222 23345666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 048780 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258 (325)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 258 (325)
...|+...|+.....+.+- .+-|...|-.-..+|...|.+..|+.=++...+..-. +..++
T Consensus 166 ~~~GD~~~ai~~i~~llEi------------------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ 226 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEI------------------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGH 226 (504)
T ss_pred hcCCchhhHHHHHHHHHhc------------------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHH
Confidence 7789999999999988875 3456667777789999999999999888777655433 44555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHH-------------HHHHHccCChHHHHHHHHHHHHc
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM-------------IHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
--+-..+-..|+.+.++...++.. + +.||-...-.. +......++|.++.+-.+...+.
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECL-K--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECL-K--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH-c--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 555666677888888888777766 2 35654322111 12234456666666666655543
No 230
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.30 E-value=0.85 Score=30.10 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 048780 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75 (325)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~ 75 (325)
.+-+..+...++-|++.+..+.+++|.|..++..|.++|+-.+..- .+....|..++++..-.++++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqElkPtl~EL 96 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQELKPTLEEL 96 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHHHhhHHHHh
Confidence 3444556666788999999999999999999999999999988652 233448888876665555544
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.15 E-value=4.4 Score=36.87 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=23.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHH
Q 048780 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (325)
.|..--...|.++.|...--.+..-..+-|....|..+.-+.+
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAAC 1068 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHh
Confidence 3333344557777776665554433355666666766654433
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.12 E-value=1.5 Score=31.30 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=81.5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
....++..+.+.+........++.+...+. . +....+.++..|++.+ ..+..+.+..
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~---------------------~~~~~~~li~ly~~~~-~~~ll~~l~~ 65 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-E---------------------NPALQTKLIELYAKYD-PQKEIERLDN 65 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-c---------------------chhHHHHHHHHHHHHC-HHHHHHHHHh
Confidence 345677788888889999999998887752 2 5567777888887654 3344444442
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc-CChH
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI-GRLK 272 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~ 272 (325)
. ++ ......+++.|.+.+.++++..++..+.. |...+..+... ++++
T Consensus 66 ---~---~~-----------------~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~ 113 (140)
T smart00299 66 ---K---SN-----------------HYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYE 113 (140)
T ss_pred ---c---cc-----------------cCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHH
Confidence 1 11 12223347778888888888888876642 22333444444 7888
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (325)
.|.+++..- -+...|..++..+..
T Consensus 114 ~a~~~~~~~-------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 114 KAIEYFVKQ-------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHhC-------CCHHHHHHHHHHHHc
Confidence 888877652 256678888877654
No 233
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.11 E-value=0.29 Score=26.73 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
+|..+...|...|++++|+++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34555666666666666666666665543
No 234
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.71 E-value=1.3 Score=29.27 Aligned_cols=72 Identities=8% Similarity=0.096 Sum_probs=48.9
Q ss_pred HHHHHHcCCHH--HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 227 IDGLYKNGFVL--EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 227 ~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
-..|....+.| +..+-++.+-..++.|++.+..+.+++|.+.+++..|.++|+.++.+.|-.- ..|..+++-
T Consensus 15 y~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~--~~Y~~~lqE 88 (108)
T PF02284_consen 15 YEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKK--EIYPYILQE 88 (108)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-T--THHHHHHHH
T ss_pred HHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChH--HHHHHHHHH
Confidence 33444444433 5666777778888999999999999999999999999999999886665432 267777654
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.56 E-value=0.39 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSE 197 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (325)
++..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999999986
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.48 E-value=4.2 Score=34.38 Aligned_cols=134 Identities=14% Similarity=0.056 Sum_probs=82.5
Q ss_pred CcchHHHHHHHHHhcC---CCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchhHHHHH-----------
Q 048780 3 RASGGFVLLGRILMSC---FTPNMVTFNSLIKGLCT---EGRILEAARLFKKLNVFCCDPNVITFNTLA----------- 65 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~----------- 65 (325)
+++..+++++.+...- +.-+..+-....-++-| .|+.++|++++..+....-.+++.+|..+-
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~ 235 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN 235 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC
Confidence 5777888888887651 11122222334445556 799999999999976666677888877664
Q ss_pred -------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc------------------hhhcC---CCCChhhHHH
Q 048780 66 -------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------------------MMDQG---MRPDVVTLNV 117 (325)
Q Consensus 66 -------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------------------~~~~~---~~~~~~~~~~ 117 (325)
+.|++.|.+.-+ +.||..+=-.+...+...|. ..+.| -..+...+.+
T Consensus 236 ~~d~~~ldkAi~~Y~kgFe-----~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~AT 310 (374)
T PF13281_consen 236 FTDRESLDKAIEWYRKGFE-----IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVAT 310 (374)
T ss_pred ccchHHHHHHHHHHHHHHc-----CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 455555554433 23333221111112222222 11122 2345566788
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHC
Q 048780 118 MTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 118 ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
++.++.-.|+.++|.+..+.|...
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhc
Confidence 899999999999999999999876
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.47 E-value=2 Score=30.62 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
-...++..+.+.+.+.....+++.+...+ ..+....+.++..|++.+ ..+.++.++.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~------------------~~~~~~~~~li~ly~~~~-~~~ll~~l~~---- 65 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN------------------SENPALQTKLIELYAKYD-PQKEIERLDN---- 65 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC------------------ccchhHHHHHHHHHHHHC-HHHHHHHHHh----
Confidence 34567888888899999999999988764 124556777788888764 3444455442
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..+......+++.|.+.+-++++..++..+.
T Consensus 66 --~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 66 --KSNHYDIEKVGKLCEKAKLYEEAVELYKKDG 96 (140)
T ss_pred --ccccCCHHHHHHHHHHcCcHHHHHHHHHhhc
Confidence 1233444557777777788877777777653
No 238
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.37 E-value=0.25 Score=25.60 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 25 TFNSLIKGLCTEGRILEAARLFKKLN 50 (325)
Q Consensus 25 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 50 (325)
+|+.|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999955
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=4.7 Score=34.02 Aligned_cols=136 Identities=15% Similarity=0.060 Sum_probs=90.9
Q ss_pred HHHHccCcHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048780 120 DNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197 (325)
Q Consensus 120 ~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (325)
+.|.+.|++..|..-|+.....= ..+...-......+ .-..+++.+..+|.+.+++..|++.-+..+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 46788999999999988865431 00000011111111 13446778889999999999999999988876
Q ss_pred CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH-HHHH
Q 048780 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK-IAWD 276 (325)
Q Consensus 198 g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~ 276 (325)
+ ++|....--=-.+|...|+++.|...|+.+.+.... |..+-+.++..--+..+.. +..+
T Consensus 287 ~------------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 287 D------------------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred C------------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445555555578899999999999999999876422 4445555555555544444 4477
Q ss_pred HHHHHhh
Q 048780 277 IFHMLMQ 283 (325)
Q Consensus 277 ~~~~~~~ 283 (325)
+|..|..
T Consensus 348 ~y~~mF~ 354 (397)
T KOG0543|consen 348 MYANMFA 354 (397)
T ss_pred HHHHHhh
Confidence 8888864
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.11 E-value=2.4 Score=31.76 Aligned_cols=97 Identities=18% Similarity=0.090 Sum_probs=67.5
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCcHHhHHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQN--PGLTPDVVTYNI 296 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~ 296 (325)
..+..+..-|.+.|+.+.|.+.+.++.+....+. ...+-.+|+.....+++..+...+.+.... .+-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567789999999999999999999988655544 345678899999999999999888776532 121222222222
Q ss_pred HHHH--HHccCChHHHHHHHHHH
Q 048780 297 MIHG--FCKEGQHQKANGLLLDM 317 (325)
Q Consensus 297 li~~--~~~~g~~~~a~~~~~~m 317 (325)
...+ +...+++.+|-+.|-+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 2222 34567888888777554
No 241
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.05 E-value=4.3 Score=33.30 Aligned_cols=151 Identities=9% Similarity=0.099 Sum_probs=86.4
Q ss_pred hhhcCCCCChhhHHHHHHHHHc--cC----cHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSK--DG----KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~ 176 (325)
+.+.|+..+..+|-+....... .. ....|.++|+.|++...-.+ .++...+..++.
T Consensus 88 L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT------------------s~~D~~~a~lLA 149 (297)
T PF13170_consen 88 LKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT------------------SPEDYPFAALLA 149 (297)
T ss_pred HHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc------------------CccchhHHHHHh
Confidence 3344555565555543333332 22 35679999999998743221 124455555655
Q ss_pred HHHhcCC----HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCC--HHHHHHHHHHHhhCC
Q 048780 177 GYCKDRN----VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF--VLEAMKVFSAIGNHK 250 (325)
Q Consensus 177 ~~~~~g~----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~ 250 (325)
. ..++ .+.++.+|+.+.+.|+..+.. ....+.++..+-.... ..++.++++.+++.|
T Consensus 150 ~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~---------------LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 150 M--TSEDVEELAERMEQCYQKLADAGFKKGND---------------LQFLSHILALSEGDDQEKVARVIELYNALKKNG 212 (297)
T ss_pred c--ccccHHHHHHHHHHHHHHHHHhCCCCCcH---------------HHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 4 3333 467788899999888765432 2222222333222222 557889999999999
Q ss_pred CCcCHHHHHHHHHHH-HhcCC---hHHHHHHHHHHhhCCCCC
Q 048780 251 CVLTIETCNCLIDGL-CKIGR---LKIAWDIFHMLMQNPGLT 288 (325)
Q Consensus 251 ~~~~~~~~~~ll~~~-~~~g~---~~~a~~~~~~~~~~~~~~ 288 (325)
+++....|..+--.. ...+. .+...++.+.+.+..++.
T Consensus 213 ~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 213 VKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred CccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCcccC
Confidence 998888776653333 22222 445556666666555544
No 242
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.04 E-value=0.3 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999999855
No 243
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.03 E-value=1.1 Score=29.19 Aligned_cols=64 Identities=9% Similarity=0.086 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
+.-++.+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+.++.+.|. +...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 34456666777777888999999999999999999999999999988755443 44467766653
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.91 E-value=5.2 Score=33.84 Aligned_cols=176 Identities=11% Similarity=-0.036 Sum_probs=95.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK---DRNVEDAVSLCR 192 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~ 192 (325)
-.++-+|-...+++...++++.+...-...- ..+..+--...-++-+ .|+.++|.+++.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~------------------~~~~~i~~~yafALnRrn~~gdre~Al~il~ 206 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDV------------------ANQHNIKFQYAFALNRRNKPGDREKALQILL 206 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccch------------------hcchHHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence 3555678899999999999999986521100 0022222233445556 899999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHH--HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG--LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
.+......+++.++..+=+ +|--+... +......++|...+.+--+. .||..+=-.+.......|.
T Consensus 207 ~~l~~~~~~~~d~~gL~GR----------IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 207 PVLESDENPDPDTLGLLGR----------IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGH 274 (374)
T ss_pred HHHhccCCCChHHHHHHHH----------HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCC
Confidence 9777666666666665522 11100000 01122366677666654332 2343321112222222222
Q ss_pred -hH---HHHHHH---HHHhhCCCC---CCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048780 271 -LK---IAWDIF---HMLMQNPGL---TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 271 -~~---~a~~~~---~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
.+ +..++- ..+..+.|. ..+---+.+++.++.-.|+.++|.+..++|.+..
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 11 222222 222212222 2334445778888889999999999999988653
No 245
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.86 E-value=7.1 Score=35.29 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=51.2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH--HHHhcCCccCccHHHHHHHHHHH
Q 048780 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEE--MVNEFGVICKPDVVTCTNIIDGL 97 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~ 97 (325)
.+....+.+-+..|...|.+++|.++ .+.-....-|..+..+|++.++- .++.. ++....-|-.|+
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~i------aclgVv~~DW~~LA~~ALeAL~f~~ARkAY---~rVRdl~~L~li--- 620 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQI------ACLGVTDTDWRELAMEALEALDFETARKAY---IRVRDLRYLELI--- 620 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcc------cccceecchHHHHHHHHHhhhhhHHHHHHH---HHHhccHHHHHH---
Confidence 34455566667777788888777654 12222333455554444433221 11111 111111122222
Q ss_pred HhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 048780 98 CKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137 (325)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 137 (325)
....++.+.|-.|+... +...|+-.|.+.+|-++|.+
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 22222555666676653 44567777888888888754
No 246
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=1 Score=36.45 Aligned_cols=105 Identities=15% Similarity=0.049 Sum_probs=66.1
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 048780 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241 (325)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (325)
.|.+.+..+...++..-....+++.+..++-.++... +.. ..++... ...++.| -.-+.++++.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~---~a~-----------~~~~~~~-~~~irll-lky~pq~~i~ 121 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSP---NAW-----------YLRNWTI-HTWIRLL-LKYDPQKAIY 121 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCc---chh-----------hhccccH-HHHHHHH-HccChHHHHH
Confidence 4445566666677776667788999988888877542 110 0111111 1112222 2345667777
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 242 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
++..=..-|+-||..+++.+|+.+.+.+++.+|.++.-.|+
T Consensus 122 ~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 122 TLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 77777777888888888888888888888887777766555
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=4.9 Score=32.46 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=69.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHH
Q 048780 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256 (325)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 256 (325)
.....|++.+|..+|....+.. +.+...--.+..+|...|+.+.|..++..+...--.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~------------------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~ 204 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA------------------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH 204 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC------------------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence 4567899999999999888762 3344556667889999999999999998875432221222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
....-|..+.+.....+...+-..... .| |...--.+...+...|+.+.|.+.+=.+.+
T Consensus 205 ~l~a~i~ll~qaa~~~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 205 GLQAQIELLEQAAATPEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211222333333333333333333221 23 444444555666666666666665555443
No 248
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=1.3 Score=35.90 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=68.4
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHH
Q 048780 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK---CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296 (325)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 296 (325)
..+...++..-....+++.++..+-.++... ..|+... ...++.|.+ -+.++++.++..=. .+|+-||..++..
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npI-qYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPI-QYGIFPDQFTFCL 140 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcc-hhccccchhhHHH
Confidence 3334444555555677888888887775431 1222222 233444433 46778888888866 8999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc
Q 048780 297 MIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+++.+.+.+++..|.++.-.|..+
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999988777643
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.27 E-value=7.7 Score=34.29 Aligned_cols=131 Identities=19% Similarity=0.164 Sum_probs=85.3
Q ss_pred hHHHHHHHHHc----cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHH-HHHHhcCCHHHHH
Q 048780 114 TLNVMTDNLSK----DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILI-NGYCKDRNVEDAV 188 (325)
Q Consensus 114 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~ 188 (325)
.|...+..++. ..+.+.|.++++.+.+. -| +...|...- +.+...|++++|.
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP---------------------~s~lfl~~~gR~~~~~g~~~~Ai 287 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YP---------------------NSALFLFFEGRLERLKGNLEEAI 287 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CC---------------------CcHHHHHHHHHHHHHhcCHHHHH
Confidence 34444444433 46788899999998876 34 444443332 4566789999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH-HHh
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG-LCK 267 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~ 267 (325)
+.|+...... ..+..+ ....+--+...+....++++|.+.|..+.+.. ..+..+|.-+..+ +..
T Consensus 288 ~~~~~a~~~q-----~~~~Ql---------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 288 ESFERAIESQ-----SEWKQL---------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHhccch-----hhHHhH---------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 9999766321 112211 34456667778888999999999999998764 2344455444433 335
Q ss_pred cCCh-------HHHHHHHHHHh
Q 048780 268 IGRL-------KIAWDIFHMLM 282 (325)
Q Consensus 268 ~g~~-------~~a~~~~~~~~ 282 (325)
.|+. ++|.++|.+..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHH
Confidence 5666 78888887764
No 250
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.87 E-value=7.7 Score=33.45 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=36.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
..+|++.++.-.-..+. .+.|++.+|.-+--+.....++++|..++..+
T Consensus 473 ysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 35677777665544443 45889999988888888889999999998765
No 251
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.16 E-value=7 Score=31.58 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=60.4
Q ss_pred ChHhHHHHHHHHHH-cC-CHHHHHHHHHHHhh-CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 219 DSHVYTTYIDGLYK-NG-FVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 219 ~~~~~~~l~~~~~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
|..+...+++.... .+ ....-.++.+.+.. .+..++..+...++..++..+++.+..++|+......+..-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 33334444444444 11 22333334444433 24566777777888888888888888888877664435566777788
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 048780 296 IMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~ 315 (325)
.+|+.....|+..-...+.+
T Consensus 243 ~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhh
Confidence 88888888888776666654
No 252
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=10 Score=33.36 Aligned_cols=231 Identities=13% Similarity=0.025 Sum_probs=131.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH----------HHHHHHHHHHHHhcCCccCccHHHHHHHHH
Q 048780 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----------LVALNLFEEMVNEFGVICKPDVVTCTNIID 95 (325)
Q Consensus 26 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~ 95 (325)
...+....-+..++..+.+-+....+.. ...+|.... ..+....+...+.|+ -...-++.+-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr----e~rad~klIak 299 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR----ELRADYKLIAK 299 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH----HHHHHHHHHHH
Confidence 4556666777778888888888777653 333333332 333334444444331 11222333333
Q ss_pred HHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---hcCCCCCch-hhH
Q 048780 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---WSKGCRHDV-YSY 171 (325)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~~~~~~-~~~ 171 (325)
++.+ +-++|.+.++.+.+...|++.......|+..+-..-..--.+ ...-..|.. .-.
T Consensus 300 ~~~r------------------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~ 361 (539)
T KOG0548|consen 300 ALAR------------------LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEE 361 (539)
T ss_pred HHHH------------------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHH
Confidence 3222 444566667788888888776655544443221111110000 000111111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 048780 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251 (325)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 251 (325)
..=-..+.+.|++..|...|.++.... +.|...|....-+|.+.|.+..|+.=.+...+..
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~------------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~- 422 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRD------------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD- 422 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC------------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 112556778999999999999998873 5577888888999999999999988777776653
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc
Q 048780 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303 (325)
Q Consensus 252 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (325)
++....|.-=..++....++++|.+.|..-. .. .|+..-+..-+.-|..
T Consensus 423 p~~~kgy~RKg~al~~mk~ydkAleay~eal-e~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 423 PNFIKAYLRKGAALRAMKEYDKALEAYQEAL-EL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--CchhHHHHHHHHHHHH
Confidence 2234445444455555668888988888766 22 4555444444443433
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.11 E-value=3.9 Score=28.63 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=63.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHH--HHHcc
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH--GFCKE 304 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~--~~~~~ 304 (325)
.-+.+..|+++.|++.|.+....- +-....||.-..++.-+|+.++|++=+++..+-.|-+.....-..+-+ .|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 345677899999999998876643 236778999999999999999998888877755554422222222222 35566
Q ss_pred CChHHHHHHHHHHHHcC
Q 048780 305 GQHQKANGLLLDMEETG 321 (325)
Q Consensus 305 g~~~~a~~~~~~m~~~g 321 (325)
|+.+.|..=|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77787777766654444
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.10 E-value=3.9 Score=28.62 Aligned_cols=88 Identities=14% Similarity=0.036 Sum_probs=68.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCc--
Q 048780 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH-KCVL-- 253 (325)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~-- 253 (325)
+.+..|+++.|++.|.+...- .+....+||.-..++.-.|+.++|++=+++..+. |-+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l------------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt 113 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL------------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT 113 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh------------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH
Confidence 567889999999999988875 4557788999999999999999999998877653 3221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
-...|..--..|...|+-+.|..=|+...
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAA 142 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHH
Confidence 12344444556778899999999888766
No 255
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.68 E-value=11 Score=33.10 Aligned_cols=168 Identities=12% Similarity=0.015 Sum_probs=106.9
Q ss_pred cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHH
Q 048780 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185 (325)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (325)
+.-..|....-+++..++....+.-+..+-.+|..-|- +...|-.++++|..+ ..+
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-----------------------~kmal~el~q~y~en-~n~ 115 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-----------------------SKMALLELLQCYKEN-GNE 115 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-----------------------hHHHHHHHHHHHHhc-Cch
Confidence 33455777788899999999999999999888887753 566788888888888 677
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-----cCHHHHHH
Q 048780 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV-----LTIETCNC 260 (325)
Q Consensus 186 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ 260 (325)
+-..+|+++.+..+. |...-..|..-|-+ ++.+.+...|......-+. .-...|.-
T Consensus 116 ~l~~lWer~ve~dfn------------------Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeK 176 (711)
T COG1747 116 QLYSLWERLVEYDFN------------------DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEK 176 (711)
T ss_pred hhHHHHHHHHHhcch------------------hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 778888888776321 11222222333333 6666666666555432111 01123444
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
+... -..+.+....+...+.++.|...-...+.-+..-|....++++|.+++..+.
T Consensus 177 L~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 177 LPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred HHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 4332 1356666777777766666666666677777777777777777777777544
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.58 E-value=4.8 Score=28.72 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=55.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHH
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHK--CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (325)
.....+.|++++|.+.|+.+...- -.-....--.++.+|.+.++++.|...++...+...-.|+ .-|...+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 344556799999999999997642 2334567778999999999999999999999865544554 34555555543
No 257
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.50 E-value=0.39 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=25.6
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAA 43 (325)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 43 (325)
|+..++.. +-+..+|+.+-..|...|++++|.
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444 668899999999999999999986
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.32 E-value=5.8 Score=29.27 Aligned_cols=124 Identities=13% Similarity=0.228 Sum_probs=68.4
Q ss_pred hcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhc--C
Q 048780 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD--R 182 (325)
Q Consensus 105 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~--g 182 (325)
..+++|+...|..+++.+.+.|++..-..+ .+.++-+|..... ..+-.+... .
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA---------------------~~LLs~~~~~~~ 76 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLA---------------------CQLLSLGNQYPP 76 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHH---------------------HHHHHhHccChH
Confidence 356777888888888888888876554444 4455555432222 222111111 1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
-..-|++++.++.. .+..+++.+...|++-+|+++.+...... ......++
T Consensus 77 ~~Ql~lDMLkRL~~-------------------------~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fL 127 (167)
T PF07035_consen 77 AYQLGLDMLKRLGT-------------------------AYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFL 127 (167)
T ss_pred HHHHHHHHHHHhhh-------------------------hHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHH
Confidence 13334444444431 23455677778888888888877653322 12234566
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 048780 263 DGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~ 282 (325)
.+..+.+|...-..+++-..
T Consensus 128 eAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 128 EAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 67677777655444444433
No 259
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=15 Score=33.89 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEV 137 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~ 137 (325)
...+|..+.......|+.+.|..+++.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 445677777778888888888888764
No 260
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.03 E-value=0.83 Score=24.22 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
..+++.|...|...|++++|++++++....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999987653
No 261
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.82 E-value=12 Score=32.28 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=69.0
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhH-HHH
Q 048780 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY-NIM 297 (325)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 297 (325)
..+|...+.+-.+...++.|..+|-++.+.| +.++..++++++..++ .|+...|.++|+.=... -||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3457778888888888999999999999988 6788889999999887 57888899998854423 3444443 344
Q ss_pred HHHHHccCChHHHHHHHH
Q 048780 298 IHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 298 i~~~~~~g~~~~a~~~~~ 315 (325)
+.-+.+.++-+.|..+|+
T Consensus 473 l~fLi~inde~naraLFe 490 (660)
T COG5107 473 LLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHhCcHHHHHHHHH
Confidence 555566677777777776
No 262
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.77 E-value=12 Score=31.98 Aligned_cols=134 Identities=13% Similarity=0.057 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLS----EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
.|..|-..|.-.|+++.|+...+.-.. .|- -..-..++..+-.++.-.|+++.|.+.++.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD----------------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD----------------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh----------------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 455566666677899999876654332 121 111345677788889999999999988875
Q ss_pred Hhh----CC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCCcHHhHHHHHHHHHccCChHHHHHHHHH
Q 048780 246 IGN----HK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ----NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316 (325)
Q Consensus 246 m~~----~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (325)
-.. .| -.....+.-+|-..|.-..++++|+.++..-.. -....-....+.+|-.+|...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 432 22 122345566777788878888888887754220 112233567888999999999999999988776
Q ss_pred HHH
Q 048780 317 MEE 319 (325)
Q Consensus 317 m~~ 319 (325)
-.+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 544
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.69 E-value=1.3 Score=22.13 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778889999999999999999998865
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.57 E-value=1.4 Score=22.17 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 56888999999999999999999998864
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.47 E-value=7 Score=28.97 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=90.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...|.+-++ .++.+..++|+.-|..+.+.|...-+. ...--+.......|+...|...|++.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Ypv----------------LA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPV----------------LARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchH----------------HHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3344554444 356788999999999999887542111 11122234457789999999999998
Q ss_pred hhCCCCcCHH-HHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 048780 247 GNHKCVLTIE-TCNCLID--GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323 (325)
Q Consensus 247 ~~~~~~~~~~-~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 323 (325)
-.....|-.. -...|=. .+...|.++.+..-.+-+. ..+-......-.+|--+-.+.|++.+|.++|.++....-.
T Consensus 121 a~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa-~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 121 AADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA-GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred hccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc-CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 7765444332 1111211 3457788988888888776 4443334455566777778899999999999988764333
No 266
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.46 E-value=0.13 Score=36.98 Aligned_cols=83 Identities=11% Similarity=0.036 Sum_probs=56.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
+..+.+.+.......+++.+...+..-+....+.++..|++.+..++..++++.. ..+.+ ..+++.|.+.|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~-----~~~~~~c~~~~l 85 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDL-----DKALRLCEKHGL 85 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-C-----THHHHHHHTTTS
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCH-----HHHHHHHHhcch
Confidence 6667777888888888888887665667888888888898888777887777632 22222 345666666677
Q ss_pred hHHHHHHHHHH
Q 048780 307 HQKANGLLLDM 317 (325)
Q Consensus 307 ~~~a~~~~~~m 317 (325)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77766666554
No 267
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.42 E-value=1.1 Score=23.63 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSE 197 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (325)
..+++.+-..|...|++++|..++++..+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356888999999999999999999988753
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=9.2 Score=30.12 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH--HHHHHHHHHHHH
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN 77 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~--~~a~~~~~~~~~ 77 (325)
...|..-..+|....++++|...+.+..+ +.+.+...|..-= +.|.-+..++.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~k 86 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSK 86 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34577777788888999999988777653 2344554554432 444445555443
No 269
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.11 E-value=0.1 Score=37.42 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=77.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 117 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
.++..+.+.+.++...++++.+...+... +....+.++..|++.++.++..++++...
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~---------------------~~~~~~~L~~ly~~~~~~~~l~~~L~~~~- 69 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKEN---------------------NPDLHTLLLELYIKYDPYEKLLEFLKTSN- 69 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC----------------------SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccccc---------------------CHHHHHHHHHHHHhcCCchHHHHHccccc-
Confidence 35677778888888888888888664332 67788899999999988888888777211
Q ss_pred cCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 048780 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276 (325)
Q Consensus 197 ~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 276 (325)
+..+ ..++..|.+.|.++++.-++.++....-..+ .+...++++.|.+
T Consensus 70 -~yd~----------------------~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~---------i~~~~~~~~~a~e 117 (143)
T PF00637_consen 70 -NYDL----------------------DKALRLCEKHGLYEEAVYLYSKLGNHDEALE---------ILHKLKDYEEAIE 117 (143)
T ss_dssp -SS-C----------------------THHHHHHHTTTSHHHHHHHHHCCTTHTTCSS---------TSSSTHCSCCCTT
T ss_pred -ccCH----------------------HHHHHHHHhcchHHHHHHHHHHcccHHHHHH---------HHHHHccHHHHHH
Confidence 1111 2235666666777777666665543221111 1233445555553
Q ss_pred HHHHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 277 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
.+.. .++...|..+++.|...+.
T Consensus 118 ~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 118 YAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 3332 2346677777777766554
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.22 E-value=8.2 Score=28.17 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=33.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 229 GLYKNGFVLEAMKVFSAIGNHKC-VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 229 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
.-.+.++.+++..++..+.-... .|...++..++ +...|+|.+|..+|+.+..
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc
Confidence 33556788888888877765421 12333444443 5677888888888888763
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.21 E-value=7.1 Score=27.47 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchhHHHHH------HHHHHHHHHHHHhcCCccCccHHH---HHHHHHHHHhcCchhh
Q 048780 35 TEGRILEAARLFKKLNVFCCDPNVITFNTLA------LVALNLFEEMVNEFGVICKPDVVT---CTNIIDGLCKDGFMMD 105 (325)
Q Consensus 35 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~------~~a~~~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~ 105 (325)
-.|.+++..++..+...+. +..-+|=++ ..+.-+++.+...| --.|... .-.++.+|+..+
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIG---kiFDis~C~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIG---KIFDISKCGNLKRVIECYAKRN---- 83 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHG---GGS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHh---hhcCchhhcchHHHHHHHHHhc----
Confidence 3577777778877776542 222222222 33334444444444 2233332 334555655543
Q ss_pred cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHH
Q 048780 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185 (325)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (325)
.+.......++.....|.-+.-.+++.++.+.+ . +++...-.+..+|.+.|+..
T Consensus 84 ----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~---------------------~~p~~L~kia~Ay~klg~~r 137 (161)
T PF09205_consen 84 ----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-E---------------------INPEFLVKIANAYKKLGNTR 137 (161)
T ss_dssp -------HHHHHHHHHHHHTT-HHHHHHHHHHH---------------------------S-HHHHHHHHHHHHHTT-HH
T ss_pred ----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-C---------------------CCHHHHHHHHHHHHHhcchh
Confidence 344567888999999999999999999887532 2 26677778889999999999
Q ss_pred HHHHHHHHHHHcCC
Q 048780 186 DAVSLCREMLSEGI 199 (325)
Q Consensus 186 ~a~~~~~~m~~~g~ 199 (325)
++.+++.+.-+.|+
T Consensus 138 ~~~ell~~ACekG~ 151 (161)
T PF09205_consen 138 EANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHhch
Confidence 99999999988875
No 272
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.15 E-value=5.8 Score=30.59 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=26.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (325)
++.+.+.+.+.+++...+.-.+.. +.|..+-..++..+|-.|+|++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 444555555555555554444332 1244445555555666666665554443
No 273
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.08 E-value=1.1 Score=24.55 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=16.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC
Q 048780 297 MIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
|..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566677777777777777666443
No 274
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.93 E-value=12 Score=29.83 Aligned_cols=101 Identities=18% Similarity=0.164 Sum_probs=69.8
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
.|+..+..+ +.|++..|...|....+....- .. ....+--|..++...|++++|..+|..
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s-----------------~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~ 203 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNS-----------------TY--TPNAYYWLGESLYAQGDYEDAAYIFAR 203 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCC-----------------cc--cchhHHHHHHHHHhcccchHHHHHHHH
Confidence 577776655 4567999999999988773211 11 233444578899999999999999998
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
+.+.- |+ .+.-...+--|..+..+.|+.++|..+|+++.+.
T Consensus 204 ~~k~~--P~-------------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 204 VVKDY--PK-------------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHhC--CC-------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 88752 11 1222344555677778888888888888888664
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.61 E-value=30 Score=33.93 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 048780 20 TPNMVTFNSLIKGLCTEG--RILEAARLFKKLNV 51 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~ 51 (325)
.|+ .-...+|..|++.+ .++.++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 55567888999988 78888888888775
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.98 E-value=11 Score=28.08 Aligned_cols=144 Identities=10% Similarity=0.017 Sum_probs=95.1
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
.+...|...++ +++.+..++|+.-|..+.+.|... .|. -.---+-....+.|+-..|..
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~-------------------Ypv-LA~mr~at~~a~kgdta~AV~ 115 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGS-------------------YPV-LARMRAATLLAQKGDTAAAVA 115 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc-------------------chH-HHHHHHHHHHhhcccHHHHHH
Confidence 34455665554 466788999999999999887542 111 011112334567899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 269 (325)
.|.+.-...-.|-.. .-+ ..---.-.+..+|-++....-.+.+...+-..-...-..|--+-.+.|
T Consensus 116 aFdeia~dt~~P~~~--rd~------------ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag 181 (221)
T COG4649 116 AFDEIAADTSIPQIG--RDL------------ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG 181 (221)
T ss_pred HHHHHhccCCCcchh--hHH------------HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc
Confidence 999997754333211 111 011112335678889999888888877765555556677777778999
Q ss_pred ChHHHHHHHHHHhhCCCCC
Q 048780 270 RLKIAWDIFHMLMQNPGLT 288 (325)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~ 288 (325)
++.+|.+.|..+..+.+-+
T Consensus 182 d~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 182 DFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred chHHHHHHHHHHHccccCc
Confidence 9999999999998544433
No 277
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.64 E-value=16 Score=29.68 Aligned_cols=89 Identities=8% Similarity=-0.043 Sum_probs=68.4
Q ss_pred CCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH----hhCCCCCC
Q 048780 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH-KCVLTIETCNCLIDGLCKIGRLKIAWDIFHML----MQNPGLTP 289 (325)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~p 289 (325)
+-.++..+...++..++..+++.+-.+++...... +..-|...|..+|+.....|+..-..++.+.= .+..++..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 46778888899999999999999999999887665 56678899999999999999988777776531 22345666
Q ss_pred cHHhHHHHHHHHHc
Q 048780 290 DVVTYNIMIHGFCK 303 (325)
Q Consensus 290 ~~~~~~~li~~~~~ 303 (325)
+...-..+-+.+.+
T Consensus 277 ~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 277 TDELRSQLSELFKK 290 (292)
T ss_pred CHHHHHHHHHHHHh
Confidence 66665555554433
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.39 E-value=22 Score=31.23 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
+-.++.+.|+.++|.+.|.+|.+.. | ......+...|+.++...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~--p--------------~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF--P--------------NLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC--C--------------ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4444445566666666666655431 0 01122344555666666666666666665543
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.94 E-value=16 Score=29.03 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
..|+. ...-.+.|++++|.+.|+.+..+-. -+ +....+--.++-++-+.++++.|...++
T Consensus 36 ~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p-~s------------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~d 95 (254)
T COG4105 36 ELYNE-GLTELQKGNYEEAIKYFEALDSRHP-FS------------------PYSEQAQLDLAYAYYKNGEYDLALAYID 95 (254)
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcCC-CC------------------cccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34444 4455677999999999999986622 11 2245566667888899999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH-------cCCHHHHHHHH---HHHhh----CCCCcCHHHH
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK-------NGFVLEAMKVF---SAIGN----HKCVLTIETC 258 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~---~~m~~----~~~~~~~~~~ 258 (325)
+..+.--.....-|.. .|.+.+. ..+...+.+.+ +.+.. ....||...-
T Consensus 96 rFi~lyP~~~n~dY~~-----------------YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~ 158 (254)
T COG4105 96 RFIRLYPTHPNADYAY-----------------YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR 158 (254)
T ss_pred HHHHhCCCCCChhHHH-----------------HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 9987632222222222 2333322 22233333333 33322 2233333321
Q ss_pred ------------HHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 259 ------------NCLIDGLCKIGRLKIAWDIFHMLMQNPGLT-PDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 259 ------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
..+.+-|.+.|.+..|..-++.|.+...-. -.....-.+..+|.+.|..++|.+.-+-+..
T Consensus 159 i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 159 IVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 335667889999999999999988543211 1234556667899999999998887666544
No 280
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.78 E-value=2.8 Score=22.97 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=16.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 226 YIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777666544
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=17 Score=32.64 Aligned_cols=82 Identities=7% Similarity=-0.085 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+..-|..|-++....|++..|.+.|..... |..|+-.+...|+.+....+-...
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------------------------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD--------------------------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc--------------------------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 344455666666666666666666555443 233444555555555444444444
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (325)
++.|. .|.-.-+|...|+++++.+++..
T Consensus 719 ~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred Hhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 44442 23344455667777777776654
No 282
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.74 E-value=18 Score=29.45 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=90.1
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048780 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200 (325)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 200 (325)
.....|+..+|..+|+...+..-. +...--.+..+|...|+.+.|..++..+-..--.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~----------------------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~ 200 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE----------------------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD 200 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc----------------------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence 456678888888888887766221 3455667889999999999999999987654211
Q ss_pred CChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 048780 201 ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL-TIETCNCLIDGLCKIGRLKIAWDIFH 279 (325)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (325)
.. ......-|..+.+.....+..++-+..-. .| |...-..+-..+...|+.+.|.+.+-
T Consensus 201 ~~-----------------~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 201 KA-----------------AHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred hH-----------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 11111123334444444444444443332 23 66666777788888888888877665
Q ss_pred HHh-hCCCCCCcHHhHHHHHHHHHccCChHHH
Q 048780 280 MLM-QNPGLTPDVVTYNIMIHGFCKEGQHQKA 310 (325)
Q Consensus 280 ~~~-~~~~~~p~~~~~~~li~~~~~~g~~~~a 310 (325)
.+. ++.|.. |...-..|+..+.-.|..+.+
T Consensus 261 ~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 261 ALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 554 333433 455666777777766644433
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.64 E-value=2.2 Score=21.00 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 26 FNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 26 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
+-.+..++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667788899999999999999865
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.63 E-value=3 Score=20.84 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048780 169 YSYNILINGYCKDRNVEDAVSLCREMLSE 197 (325)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (325)
.+|..+..+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778889999999999999999998874
No 285
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.37 E-value=4.6 Score=30.69 Aligned_cols=32 Identities=9% Similarity=-0.104 Sum_probs=19.9
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 251 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..|++.+|..++.++...|+.++|.++..++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34666666666666666666666666666554
No 286
>PRK11906 transcriptional regulator; Provisional
Probab=85.03 E-value=25 Score=30.63 Aligned_cols=95 Identities=8% Similarity=-0.091 Sum_probs=60.9
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
+.|..+...+-.+....++++.|...|++....+ || ..+|...-..+.-+|+.++|.+.+++..+....+.-.....
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 4467777777777788888999999999887654 43 44555555556667999999999988552322222233333
Q ss_pred HHHHHHHccCChHHHHHHH
Q 048780 296 IMIHGFCKEGQHQKANGLL 314 (325)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~ 314 (325)
-.++.|...+ .+.|.+++
T Consensus 413 ~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 413 ECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHcCCc-hhhhHHHH
Confidence 3444555544 45555554
No 287
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.72 E-value=1.9 Score=20.30 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 048780 25 TFNSLIKGLCTEGRILEAARLFK 47 (325)
Q Consensus 25 ~~~~ll~~~~~~g~~~~a~~~~~ 47 (325)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44567888999999999999876
No 288
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.50 E-value=11 Score=26.16 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 048780 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75 (325)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~ 75 (325)
.+-+..+...++-|++.+-.+-+++|.+..++..|.++|+-++..- .+....|..++++-.-+++++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v~elkpvl~EL 135 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYVKELKPVLNEL 135 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHh
Confidence 3344556667788999999999999999999999999999987642 233335777765555554443
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.23 E-value=3.7 Score=20.42 Aligned_cols=29 Identities=24% Similarity=0.128 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
.+|..+-..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778889999999999999999998764
No 290
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.12 E-value=9.9 Score=25.22 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHH
Q 048780 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 314 (325)
..++|.-|-+.+...+-. ....--+=+..+...|++++|..+.+... .||...|.+|-. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHH
Confidence 356777777777655422 22233333456778899999998876643 788888877754 4667766666666
Q ss_pred HHHHHcC
Q 048780 315 LDMEETG 321 (325)
Q Consensus 315 ~~m~~~g 321 (325)
-+|..+|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 6666555
No 291
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.95 E-value=21 Score=28.81 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=58.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH-----
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF----- 301 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----- 301 (325)
|.+++..+++.+++...-+--...-+..+.+...-|-.|.|.+++..+.++-..-....+ +-+..-|.+++.-|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHHH
Confidence 889999999999887654433322233445566666779999999988888777663322 22334466665554
Q ss_pred HccCChHHHHHHH
Q 048780 302 CKEGQHQKANGLL 314 (325)
Q Consensus 302 ~~~g~~~~a~~~~ 314 (325)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4569999998876
No 292
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.87 E-value=28 Score=30.25 Aligned_cols=193 Identities=10% Similarity=0.116 Sum_probs=103.3
Q ss_pred hHHHHHHHH--HccCcHHHHHHHHHHHHHC--CCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 048780 114 TLNVMTDNL--SKDGKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 114 ~~~~ll~~~--~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
.|-.+..+. .+.+.+.+|++.+..-..+ +-.|.-- +.=+.-. -+|...=+..+.++...|++.++..
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~L--d~ni~~l-------~~df~l~~i~a~sLIe~g~f~EgR~ 149 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWL--DTNIQQL-------FSDFFLDEIEAHSLIETGRFSEGRA 149 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchh--hhhHHHH-------hhHHHHHHHHHHHHHhcCCcchHHH
Confidence 444444443 4678899999988877765 3332211 1101100 1134445667788899999999999
Q ss_pred HHHHHHHcCCC----CChhhHHHHHH---------HhC------------------------------CCCCChHhHHHH
Q 048780 190 LCREMLSEGIR----ADATTYNTLFM---------AIN------------------------------NVPPDSHVYTTY 226 (325)
Q Consensus 190 ~~~~m~~~g~~----~~~~~~~~ll~---------~~~------------------------------~~~~~~~~~~~l 226 (325)
++++|...=++ -+..+|+.++. ... .+-|-......+
T Consensus 150 iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~i 229 (549)
T PF07079_consen 150 ILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTI 229 (549)
T ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHH
Confidence 99988765333 67777777332 111 111222222222
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----cHHhHHHHHH
Q 048780 227 IDGLYKN--GFVLEAMKVFSAIGNHKCVLTIE-TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP----DVVTYNIMIH 299 (325)
Q Consensus 227 ~~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~ 299 (325)
+....-- .+..--++++....+.-+.|+-. ....++..+.+ +.+++..+.+.+. ...+.+ -..+|..++.
T Consensus 230 mqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia-~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 230 MQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIA-SSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Confidence 2221110 11112223333333333445533 23444445544 5666666666654 222221 3567888888
Q ss_pred HHHccCChHHHHHHHHHHH
Q 048780 300 GFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~ 318 (325)
...+.++...|.+.+.-+.
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 8889999998888877654
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.70 E-value=39 Score=31.82 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=38.1
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
.......-|+.+.+...++-|..+.+ ..+..++ +... .....-..+.+.|++++|...
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d--~~~~-----------------i~~kYgd~Ly~Kgdf~~A~~q 390 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAK---SQHLDED--TLAE-----------------IHRKYGDYLYGKGDFDEATDQ 390 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHH---hcCCCHH--HHHH-----------------HHHHHHHHHHhcCCHHHHHHH
Confidence 34445667788888888888887764 3333221 2222 222233445567888888887
Q ss_pred HHHHHH
Q 048780 191 CREMLS 196 (325)
Q Consensus 191 ~~~m~~ 196 (325)
|-+-..
T Consensus 391 YI~tI~ 396 (933)
T KOG2114|consen 391 YIETIG 396 (933)
T ss_pred HHHHcc
Confidence 766543
No 294
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.57 E-value=8.3 Score=26.78 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHH
Q 048780 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299 (325)
Q Consensus 238 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 299 (325)
+..+.++.+..-++.|++..-..-+++|.+.+|+..|.++|+.++.+.|- ....|-.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~--~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA--QKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc--HHHHHHHHHH
Confidence 44556666777788899999999999999999999999999988755443 2224555543
No 295
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.49 E-value=4.1 Score=25.56 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=20.5
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCc-HHhHHHHHHHHHccCChHHHHHH
Q 048780 267 KIGRLKIAWDIFHMLMQNPGLTPD-VVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 267 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
...+.++|+..|....++..-.|+ -.++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544422211221 12344455555555555554443
No 296
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.42 E-value=27 Score=29.73 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=24.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL 49 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 49 (325)
.|+.+.|.+-|+.|...- ..-..-...|.-..-+.|+.+.|.+.-++.
T Consensus 133 eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 133 EGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred cCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 378888888888887521 111111222333334445555555444444
No 297
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.42 E-value=28 Score=29.85 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=81.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCcCHH
Q 048780 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH---KCVLTIE 256 (325)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~ 256 (325)
-.++.+.|...|++-+..+ |+......... .+.-...+..=-.-..+.|++..|.+.+.+.... ..+|+..
T Consensus 215 y~~~~~ka~~hf~qal~ld--pdh~~sk~~~~----~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLD--PDHQKSKSASM----MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccchHHHHHHHhhhhccC--hhhhhHHhHhh----hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 3567778887777766543 33333222211 0001112222234456789999999999888653 4567788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHH-hHHHHH--HHHHccCChHHHHHHHHHHHHc
Q 048780 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV-TYNIMI--HGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li--~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.|.....+..+.|+..+|..-.+... ..|.. ....+. +++...++|++|.+-++...+.
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al-----~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEAL-----KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhh-----hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888889999999998887765 22332 223333 3455667888888888776543
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.38 E-value=23 Score=28.82 Aligned_cols=165 Identities=7% Similarity=-0.026 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHccCcHH---HHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKME---EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
.+...++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+.+.+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~----------------------~~~~~~L~l~il~~~~~~~~~~~ 142 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN----------------------KPEVFLLKLEILLKSFDEEEYEE 142 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC----------------------CcHHHHHHHHHHhccCChhHHHH
Confidence 35566777887776654 456666666444211 23344455666667899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHH---HHcCCHHHHHHHHHHHhhCCCCcCHH-HHHH-H---
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL---YKNGFVLEAMKVFSAIGNHKCVLTIE-TCNC-L--- 261 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~-l--- 261 (325)
.+.+|...-. -....+..++..+ .... ...|...+..+....+.|... .... +
T Consensus 143 ~L~~mi~~~~------------------~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~ 203 (278)
T PF08631_consen 143 ILMRMIRSVD------------------HSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTR 203 (278)
T ss_pred HHHHHHHhcc------------------cccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999987621 1122233333333 3332 345556665555544444443 1111 1
Q ss_pred HHHHHhcC------ChHHHHHHHHHHhhCCCCCCcHHhHHHH-------HHHHHccCChHHHHHHHHHHH
Q 048780 262 IDGLCKIG------RLKIAWDIFHMLMQNPGLTPDVVTYNIM-------IHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 262 l~~~~~~g------~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~ 318 (325)
+-.....+ .++.+..+++...+..+.+.+..+-.++ ...+.+.++++.|.++++--.
T Consensus 204 ~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 204 VLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11111211 1455555566444333333344333333 234567789999999998543
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.17 E-value=26 Score=31.63 Aligned_cols=132 Identities=15% Similarity=0.067 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
..-+.+...+.+.|..++|+++-.+ | .. -.....+.|+++.|.++..
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D-------~----------------------d~----rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTD-------P----------------------DQ----RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCC-------h----------------------hh----hhhhhhhcCcHHHHHHHHH
Confidence 3556777777888888888765321 1 11 1233346788888888776
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
+.. +..-|..|-++..+.+++..|.+.|....+ |..|+-.+...|+.+
T Consensus 662 e~~-----------------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 662 EAN-----------------------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhc-----------------------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 543 345577778888999999999888876653 456777777778777
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHH
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (325)
....+-.... +.|. -|.. ..+|...|+++++.+++.+
T Consensus 710 ~l~~la~~~~-~~g~-~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAK-KQGK-NNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHH-hhcc-cchH-----HHHHHHcCCHHHHHHHHHh
Confidence 6655555544 4442 2322 3345566777777776654
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.08 E-value=18 Score=27.65 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCcHHhHHHHHHHHHccCChHHHH
Q 048780 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN--PGLTPDVVTYNIMIHGFCKEGQHQKAN 311 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (325)
.-+.|.+.|-.+...+.--++..-..|...|. ..+.+++..++....+. .+-.+|+..+.+|...|.+.|+.+.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45778888888888776656666666666666 67788898888776532 233678888999999999999999875
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.03 E-value=3.8 Score=20.30 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
..|..+-..+...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888999999999999999988765
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.97 E-value=39 Score=31.21 Aligned_cols=195 Identities=11% Similarity=0.129 Sum_probs=96.9
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCC------------CCCchhhHHHHHHHHHh---cCC
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG------------CRHDVYSYNILINGYCK---DRN 183 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~------------~~~~~~~~~~li~~~~~---~g~ 183 (325)
...+.-.|+++.|.+.+-. ..+...+..++.+.+.-|.-.... ..|...-+..||..|++ ..+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 3455667889999988865 334455666666666655441100 01112457788888887 357
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHH----------------------------H---hCCCCCChHh----HHHHHH
Q 048780 184 VEDAVSLCREMLSEGIRADATTYNTLFM----------------------------A---INNVPPDSHV----YTTYID 228 (325)
Q Consensus 184 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~----------------------------~---~~~~~~~~~~----~~~l~~ 228 (325)
+.+|.++|--+....-+.....+...+. . .-++..+..- ......
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 8888888877765433222233333332 0 0012222222 223344
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHhhCCC----C-CCcH
Q 048780 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR------------LKIAWDIFHMLMQNPG----L-TPDV 291 (325)
Q Consensus 229 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~------------~~~a~~~~~~~~~~~~----~-~p~~ 291 (325)
-+-..|++++|..+|....+.+ .-....|.++.-...... ...|..+.+....... + ..+.
T Consensus 423 ~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 4567888999998888765422 112234444443333222 3445666655542111 1 2234
Q ss_pred HhHHHHHHH-----HHccCChHHHHHHHHHH
Q 048780 292 VTYNIMIHG-----FCKEGQHQKANGLLLDM 317 (325)
Q Consensus 292 ~~~~~li~~-----~~~~g~~~~a~~~~~~m 317 (325)
.|+..|++. +...|+++.|++.++++
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 566666543 46778999998777664
No 303
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.17 E-value=6.6 Score=21.94 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048780 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211 (325)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 211 (325)
+....+.|-++++..++++|.+.|+..+...+..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3344577888899999999999999888887777643
No 304
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=81.15 E-value=14 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
..-|..++.-|...|..++|++++.++..
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44689999999999999999999999987
No 305
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.30 E-value=33 Score=28.60 Aligned_cols=87 Identities=13% Similarity=-0.087 Sum_probs=40.2
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCcHHhHHHHHHHHHccCCh
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG--LTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~ 307 (325)
+..+|.+++|++.-++..+.+ +.|.=.-.++...+-..|++.++.++..+-..... --.-...|-...-.+...+.+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred HHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 345566666666655554433 12333334444444455566666655444321110 000112233333334455667
Q ss_pred HHHHHHHHHH
Q 048780 308 QKANGLLLDM 317 (325)
Q Consensus 308 ~~a~~~~~~m 317 (325)
+.|+++|+.=
T Consensus 264 e~aleIyD~e 273 (491)
T KOG2610|consen 264 EKALEIYDRE 273 (491)
T ss_pred hHHHHHHHHH
Confidence 7777776654
No 306
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.14 E-value=5.7 Score=19.71 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666677777777777766543
No 307
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=79.78 E-value=28 Score=27.44 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=49.7
Q ss_pred HHHcCCHHHHHHHHHHHhh-CCC-----------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHH
Q 048780 230 LYKNGFVLEAMKVFSAIGN-HKC-----------VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~-~~~-----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 297 (325)
+...|+..+|+..++.-.. .|. .|.+.....++..|. .+++++|.+++..+- +.|+.|.. ..+.+
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw-~lgysp~D-ii~~~ 278 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELW-KLGYSPED-IITTL 278 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHH-HcCCCHHH-HHHHH
Confidence 4557888888887776543 121 366777777777765 467888999988887 77887753 44566
Q ss_pred HHHHHccC
Q 048780 298 IHGFCKEG 305 (325)
Q Consensus 298 i~~~~~~g 305 (325)
++++....
T Consensus 279 FRv~K~~~ 286 (333)
T KOG0991|consen 279 FRVVKNMD 286 (333)
T ss_pred HHHHHhcc
Confidence 67665543
No 308
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.67 E-value=8.6 Score=21.48 Aligned_cols=33 Identities=6% Similarity=0.178 Sum_probs=20.4
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 048780 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263 (325)
Q Consensus 231 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 263 (325)
.+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344566666666666666666666666665554
No 309
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=79.46 E-value=30 Score=27.55 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
+.+-|.+.|.+..|..-+++|.+. .+-+..+ ...+-.+..+|-..|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~--------------~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAV--------------REALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccch--------------HHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 446788899999999999999886 2222222 233456677888888888888877666544
No 310
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=79.36 E-value=3.2 Score=33.58 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=35.1
Q ss_pred CCCChh-hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHH
Q 048780 108 MRPDVV-TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151 (325)
Q Consensus 108 ~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 151 (325)
+.||.. -|+..|....+.||+++|++++++.++.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345544 46799999999999999999999999999876444443
No 311
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.37 E-value=4.5 Score=24.11 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 291 VVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
-.-.-.+|.+|...|++++|.++++++.
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333444555555555555555555543
No 312
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.84 E-value=10 Score=23.83 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=37.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCc-C-HHHHHHHHHHHHhcCChHHHHHHH
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVL-T-IETCNCLIDGLCKIGRLKIAWDIF 278 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~-~-~~~~~~ll~~~~~~g~~~~a~~~~ 278 (325)
+..| ...+.++|+..|+...+.-..+ + -.++..++.+|+..|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5678899999998887654332 2 247888999999999998877653
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.44 E-value=26 Score=25.70 Aligned_cols=72 Identities=10% Similarity=-0.058 Sum_probs=45.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH
Q 048780 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255 (325)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 255 (325)
..-.+.++.+++..++..+.-- +|.... .-..-...+...|++.+|..+|+++...+ |..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e----------------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~ 77 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPE----------------LDLFDGWLHIVRGDWDDALRLLRELEERA--PGF 77 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchH----------------HHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCC
Confidence 3445678999999999999864 232211 11222455788999999999999987654 332
Q ss_pred HHHHHHHHHHHh
Q 048780 256 ETCNCLIDGLCK 267 (325)
Q Consensus 256 ~~~~~ll~~~~~ 267 (325)
..-..|+..|..
T Consensus 78 p~~kALlA~CL~ 89 (160)
T PF09613_consen 78 PYAKALLALCLY 89 (160)
T ss_pred hHHHHHHHHHHH
Confidence 233344444443
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.14 E-value=25 Score=25.41 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=51.8
Q ss_pred HHcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-------------cHHhHHH
Q 048780 231 YKNGFVLEAMKVFSAIGNHKC-VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-------------DVVTYNI 296 (325)
Q Consensus 231 ~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~ 296 (325)
...++.+++..++..|.-... .+...+|...+ +...|+|++|.++|+.+....+..| ....|..
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 457889999999988865421 23344555544 5678999999999999874332222 1123344
Q ss_pred HHHHHHccCChHHHHHHHHHHH
Q 048780 297 MIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~ 318 (325)
........+...++..+.+.+.
T Consensus 99 ~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 99 HADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHhCCCHhHHHHHHHHh
Confidence 4444444455555555555554
No 315
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=76.81 E-value=47 Score=28.42 Aligned_cols=187 Identities=10% Similarity=0.078 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-CCCCccc--HHHHHHHHHh---------------hcCCCCCchhh-HH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRD-VNPNTCT--YNTLMDGFAW---------------WSKGCRHDVYS-YN 172 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~--~~~ll~~~~~---------------~~~~~~~~~~~-~~ 172 (325)
...+...+...+..|+|+.|+++++.-+... +.++..- -..|+.+-+. ......|+..- --
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav 267 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAV 267 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHH
Confidence 4567889999999999999999999877653 3444332 2334443332 22233343322 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC
Q 048780 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH-KC 251 (325)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~ 251 (325)
.--.++.+.|+..++-.+++.+-+....| .++. +..+.+.|+ .+.+-+++.+.. ..
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP-------------------~ia~--lY~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHP-------------------DIAL--LYVRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCCh-------------------HHHH--HHHHhcCCC--cHHHHHHHHHHHHhc
Confidence 23467888999999999999998763322 2221 223344444 333333333221 12
Q ss_pred Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH-HccCChHHHHHHHHHHHHcCCCC
Q 048780 252 VL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF-CKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 252 ~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
+| +....-.+..+-...|++..|..--+... ...|....|..|.+.- ...||-.++..++-+-.+.--.|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 33 45566677788888999988877666544 3378888888887755 44589888888887776654333
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.31 E-value=19 Score=26.98 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHhcCCCCch-hhHHHHHHHHHhcC----C-------HHHHHHHHHHHHhcCCCCCchhHHHHH---HHH
Q 048780 4 ASGGFVLLGRILMSCFTPNM-VTFNSLIKGLCTEG----R-------ILEAARLFKKLNVFCCDPNVITFNTLA---LVA 68 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~g----~-------~~~a~~~~~~m~~~g~~~~~~~~~~l~---~~a 68 (325)
+++|+.-|+..+... |+. .++..+-.+|...+ + +++|.+.|++..+. .|+..+|+.-+ ..|
T Consensus 51 iedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 51 IEDAISKFEEALKIN--PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHhh
Confidence 456667777766653 433 55555665555443 2 44555555555543 67777777776 455
Q ss_pred HHHHHHHHHhc
Q 048780 69 LNLFEEMVNEF 79 (325)
Q Consensus 69 ~~~~~~~~~~~ 79 (325)
-++..++.+.+
T Consensus 127 p~lh~e~~~~~ 137 (186)
T PF06552_consen 127 PELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHHH
Confidence 56666665543
No 317
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=75.81 E-value=21 Score=24.02 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHH
Q 048780 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (325)
.-..++|..|.+.+...+. -....--+-+..+...|+++.|+. .. ...-.||...|.+|-. .+.|..+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~~---~~~~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL--LP---QCHCYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--HH---TTS--GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--hc---ccCCCccHHHHHHHHH--HhhccHHHHHH
Confidence 3457899999999888764 244444555667889999999932 22 2333789888877654 67888888888
Q ss_pred HHHHHHHcC
Q 048780 313 LLLDMEETG 321 (325)
Q Consensus 313 ~~~~m~~~g 321 (325)
.+.++..+|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 888776554
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.44 E-value=34 Score=26.16 Aligned_cols=75 Identities=7% Similarity=-0.054 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh---CCCCcCHHHHH
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN---HKCVLTIETCN 259 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~ 259 (325)
.-+.|.+.|-.+...+.-- +......|...|. ..+.+++.+++....+ .+-.+|+..+.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~-----------------t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~ 182 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELE-----------------TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILK 182 (203)
T ss_pred CcHHHHHHHHHHcCCCCCC-----------------CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 3467888888887765332 3333444455555 5789999999877654 34478999999
Q ss_pred HHHHHHHhcCChHHHH
Q 048780 260 CLIDGLCKIGRLKIAW 275 (325)
Q Consensus 260 ~ll~~~~~~g~~~~a~ 275 (325)
+|...|-+.|+++.|-
T Consensus 183 sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 183 SLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHhcchhhhh
Confidence 9999999999998874
No 319
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=75.43 E-value=18 Score=23.21 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCCCCchhHHHHH
Q 048780 44 RLFKKLNVFCCDPNVITFNTLA 65 (325)
Q Consensus 44 ~~~~~m~~~g~~~~~~~~~~l~ 65 (325)
++|+-....|+..|+..|.+++
T Consensus 29 EL~ELa~~AGv~~dp~VFriil 50 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIIL 50 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHH
Confidence 4555555555555555555555
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.79 E-value=22 Score=23.67 Aligned_cols=71 Identities=11% Similarity=0.042 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH-------HHHHHHHHHHH
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------LVALNLFEEMV 76 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-------~~a~~~~~~~~ 76 (325)
-++|..+-+.+...+- -...+--.-+..+...|++++|+.+.+.+. .||...|-.+. +....-+..+.
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCEWRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3566666677665431 122333333456678899999999888773 89999998887 34444555565
Q ss_pred Hhc
Q 048780 77 NEF 79 (325)
Q Consensus 77 ~~~ 79 (325)
..+
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 555
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=74.38 E-value=52 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHH
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (325)
..|+.-+...++.-+|-++...... .|. ..+..|++...|++|.++...
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s----d~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS----DPE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc----CHH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 4456666666666666666655441 222 224445555667777666543
No 322
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.20 E-value=8.1 Score=31.42 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=30.3
Q ss_pred CChHh-HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 048780 218 PDSHV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260 (325)
Q Consensus 218 ~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 260 (325)
|+..+ |+..|....+.||+++|+.++++.++.|..--..+|-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34333 56788888888888888888888888886644444433
No 323
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.18 E-value=33 Score=25.81 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhCCCCcCH--H-----HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 236 VLEAMKVFSAIGNHKCVLTI--E-----TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 236 ~~~a~~~~~~m~~~~~~~~~--~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
++.|+.+|+.+.+.--.|.. . .-...+..|.+.|.+++|.++++.... .|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHcc
Confidence 56788888877665433311 1 123446678899999999999998874 344444444444444443
No 324
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=73.39 E-value=32 Score=31.56 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCChH------HHHHHHHHHhhCCCCCCcHHhHHH
Q 048780 225 TYIDGLYKNGFVLEAMKVFSAIGNH--KCVLTIETCNCLIDGLCKIGRLK------IAWDIFHMLMQNPGLTPDVVTYNI 296 (325)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~p~~~~~~~ 296 (325)
+|+.+|..+|++-.+.++++.+... |-+.-...||..|+.+.+.|.++ .|.++++... +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchHHHH
Confidence 7899999999999999999988653 44444567899999999999765 3445554433 4667888888
Q ss_pred HHHHHHc
Q 048780 297 MIHGFCK 303 (325)
Q Consensus 297 li~~~~~ 303 (325)
|+.+-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 8776544
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.27 E-value=42 Score=26.18 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=55.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
|.+.-++.+.+.+.+.+|+...++-.+. +|+ +...-..+++.+|-.|++++|..-++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPt--------------------da~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPT--------------------DAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCc--------------------cccchhHHHHHHhhcchHHHHHHHHHH
Confidence 4455677888999999999999887766 443 555666788999999999999887776
Q ss_pred HHHc--CCCCChhhHHHHHH
Q 048780 194 MLSE--GIRADATTYNTLFM 211 (325)
Q Consensus 194 m~~~--g~~~~~~~~~~ll~ 211 (325)
.-+. ...+....|..++.
T Consensus 61 ~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 61 AATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HhhcCcccchHHHHHHHHHH
Confidence 6543 23455556666654
No 326
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=73.21 E-value=31 Score=24.70 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=56.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH
Q 048780 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255 (325)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 255 (325)
....+.|++++|.+.|+.+..+- +.+ +-...+.-.|+.+|.+.+++++|...+++..+....--.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ry-P~g--------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRY-PFG--------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-CCC--------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34457899999999999998762 111 113345567799999999999999999999876543333
Q ss_pred HHHHHHHHHHHhcCC
Q 048780 256 ETCNCLIDGLCKIGR 270 (325)
Q Consensus 256 ~~~~~ll~~~~~~g~ 270 (325)
.-|...+.+++....
T Consensus 83 vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQ 97 (142)
T ss_pred ccHHHHHHHHHHHHH
Confidence 456666666554443
No 327
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.82 E-value=12 Score=28.35 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048780 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF 52 (325)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 52 (325)
+..++..+. .|++.+|..++..+...|+.++|.+..+++...
T Consensus 132 ~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 132 EWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333444433 799999999999999999999999999988764
No 328
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.79 E-value=11 Score=22.44 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV 51 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 51 (325)
++...++++.+... ..|..-.-.+|.+|...|++++|.+..+++..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666666544 34555566789999999999999999988864
No 329
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.78 E-value=35 Score=24.58 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCC-HHHHHHHHHHHh
Q 048780 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF-VLEAMKVFSAIG 247 (325)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~ 247 (325)
...|+++......+++.....+++.+..- .++..+ -..+...|.+++.+..+..- ---+..+|+.|+
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l--~~~~~~----------~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFL--NTDNII----------GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHh--hHHHHh----------hhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 45777888888888899888888888321 111000 01233445555665544433 223445556666
Q ss_pred hCCCCcCHHHHHHHHHHHHh
Q 048780 248 NHKCVLTIETCNCLIDGLCK 267 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~~ 267 (325)
+.+.++++.-|..++.++.+
T Consensus 108 ~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHc
Confidence 55556666666666666544
No 330
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.53 E-value=60 Score=27.20 Aligned_cols=87 Identities=13% Similarity=-0.041 Sum_probs=52.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCcC
Q 048780 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH---KCVLT 254 (325)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~ 254 (325)
+...|-+++|++.-++..+- -+-|.-.-.+....+-..|+..++.+...+-... +.-.-
T Consensus 185 L~E~g~y~dAEk~A~ralqi------------------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla 246 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQI------------------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA 246 (491)
T ss_pred HHHhccchhHHHHHHhhccC------------------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH
Confidence 34566666666666555443 2445555666777777788888888876554321 11111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 255 IETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..-|-...-.+...+.++.|+++|+.-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 2233444445666789999999998644
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.50 E-value=35 Score=26.51 Aligned_cols=68 Identities=12% Similarity=-0.070 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHhcCCCCc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 048780 4 ASGGFVLLGRILMSCFTPN-----MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEE 74 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~ 74 (325)
+..|++.|+......-.|. ......+.....+.|++++|.+.|..+...+-.+ .-..+++.|.+.++.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s---~~~~l~~~AR~~w~~ 213 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS---KEPKLKDMARDQWQL 213 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC---CcHHHHHHHHHHHHh
Confidence 4578888888776532322 2344456667788999999999999999754222 244555667666654
No 332
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.65 E-value=5.4 Score=28.00 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=21.5
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCc
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNT 147 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~ 147 (325)
.-+.|.-.+|-++|+.|.+.|-.||.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 34457778899999999999999974
No 333
>PRK12356 glutaminase; Reviewed
Probab=70.47 E-value=59 Score=27.02 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=32.0
Q ss_pred cCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHH
Q 048780 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151 (325)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 151 (325)
..|+-..||+++..-...|.-..--+.....+-..+|..-....+++..+++++++....+..|..+|.
T Consensus 94 ~EPSG~~FNsi~~Le~~~g~P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~ 162 (319)
T PRK12356 94 ADPTGLPFNSVIAIELHGGKPLNPLVNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQ 162 (319)
T ss_pred CCCCCCCcchHHHhhccCCCCCCccccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHH
Confidence 677777777776543332221111122223334444443222223455555666555444555554443
No 334
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.96 E-value=36 Score=24.48 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 268 (325)
++.+.+++.|++++..- ..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...
T Consensus 7 ~~~~~lk~~glr~T~qR------------------~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 7 DAIERLKEAGLRLTPQR------------------LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHcCCCcCHHH------------------HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 45556677777665432 344677777777788999999999888777777766677777777
Q ss_pred CCh
Q 048780 269 GRL 271 (325)
Q Consensus 269 g~~ 271 (325)
|-+
T Consensus 69 Glv 71 (145)
T COG0735 69 GLV 71 (145)
T ss_pred CCE
Confidence 743
No 335
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.60 E-value=29 Score=27.61 Aligned_cols=63 Identities=8% Similarity=0.023 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC---CC-CCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PG-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
.....+...|.+.|++++|.++|+.+... .| ..+...+...+..++.+.|+.+....+.=+|.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34456677889999999999999887422 22 34456666777888888999988887765553
No 336
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.52 E-value=9.5 Score=18.38 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=17.1
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIK 31 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~ 31 (325)
|+++.|..+|+.+.... +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45667777777766553 245555555443
No 337
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=69.25 E-value=67 Score=26.86 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCcCHHHH--HHHHHHHHhcCChHHHHHHHHHHhh----CCCCCCcHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNH---KCVLTIETC--NCLIDGLCKIGRLKIAWDIFHMLMQ----NPGLTPDVV 292 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 292 (325)
....++...-+.++.++|++.++++.+. --.|+...| ....+.+...|+.+++.++++.... ..+++|++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444555666677999999999988653 235676666 4456677789999999999988762 157777554
Q ss_pred h-HHHHHHH-HHccCChHH
Q 048780 293 T-YNIMIHG-FCKEGQHQK 309 (325)
Q Consensus 293 ~-~~~li~~-~~~~g~~~~ 309 (325)
+ |..+-.- |-..|++..
T Consensus 157 ~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hhHHHHHHHHHHHHHhHHH
Confidence 3 3333333 344455443
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.73 E-value=41 Score=24.22 Aligned_cols=88 Identities=9% Similarity=0.096 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHK-----CVLTIETCNCLIDGLCKIGR-LKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
..|.++.-.+..+++.-...+++.+.... -..+...|.+++.+.++..- --.+..+|.-+. +.+.+++..-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk-~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK-KNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH-HcCCCCCHHHHH
Confidence 35777777788888888888887774321 12467789999999977766 335677888887 577899999999
Q ss_pred HHHHHHHccCChHHH
Q 048780 296 IMIHGFCKEGQHQKA 310 (325)
Q Consensus 296 ~li~~~~~~g~~~~a 310 (325)
.++.++.+....+..
T Consensus 120 ~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 120 CLIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHHHcCCCCcch
Confidence 999999887554443
No 339
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.14 E-value=11 Score=17.43 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNV 51 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 51 (325)
..|..+...+...|+++.|...|+...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567788889999999999999988765
No 340
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.10 E-value=70 Score=26.68 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=36.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 226 YIDGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
|..+..+.|+..+|.+.++.+.+.- +..-..+...|+.++.....+.++..++-+.-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444456788888888887775542 11112234567888888777777777766544
No 341
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.66 E-value=70 Score=26.12 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=78.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH----hhC
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI----GNH 249 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~ 249 (325)
+.+-.++.+++++|...+.++...|+..+..+.+. ...+...+...|...|+....-+..... .+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nE----------qE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f 78 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNE----------QEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF 78 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhH----------HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh
Confidence 34455678999999999999999998877766543 2455667778888888766555444322 222
Q ss_pred CCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhh----CCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 250 KCVLTIETCNCLIDGLCKIG-RLKIAWDIFHMLMQ----NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
.-.....+..+|+..+-... .++...++.....+ +...-.....=.-++..+.+.|.+.+|..+...+
T Consensus 79 tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 79 TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 21223445556666554332 34444444443331 1000001112235677788888888887665443
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.43 E-value=49 Score=23.94 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=39.3
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 198 (325)
-...++++++..+++.|.-. .|+. +...++... .+...|++++|.++|++..+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvL--rP~~------------------~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL--RPNL------------------KELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCCc------------------cccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34589999999999988754 4432 133334333 3568899999999999998864
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.97 E-value=68 Score=25.38 Aligned_cols=49 Identities=27% Similarity=0.165 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCc-hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 048780 89 TCTNIIDGLCKDGF-MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137 (325)
Q Consensus 89 ~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 137 (325)
.|+..-.+|++..+ ..+.|-+.|..+-..-..-|.+.+++++|...++.
T Consensus 49 ~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~ 98 (288)
T KOG1586|consen 49 NWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEK 98 (288)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 34444555555444 23344444544433344444555577777776654
No 344
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.54 E-value=95 Score=26.88 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=40.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHh---HHHHHHH
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLT---IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT---YNIMIHG 300 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~ 300 (325)
+...+..|+.+-+..++ +.|..++ ..-.+.|.. .+..|+.+-+..+++ .|..|+... ..+++..
T Consensus 139 Lh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~~-A~~~g~~eiv~~Ll~-----~ga~~n~~~~~~~~t~l~~ 208 (413)
T PHA02875 139 LHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLII-AMAKGDIAICKMLLD-----SGANIDYFGKNGCVAALCY 208 (413)
T ss_pred HHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHh-----CCCCCCcCCCCCCchHHHH
Confidence 44445667765544443 3444333 333344444 345677665544443 344444321 1244443
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCC
Q 048780 301 FCKEGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~~g~~pd 325 (325)
.+..|+.+ +.+.+.+.|..||
T Consensus 209 A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 209 AIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHcCCHH----HHHHHHHCCcCcc
Confidence 44556654 4445555666553
No 345
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.65 E-value=94 Score=26.52 Aligned_cols=147 Identities=13% Similarity=0.052 Sum_probs=87.8
Q ss_pred CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 048780 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205 (325)
Q Consensus 126 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 205 (325)
..+.++...|......+ |......+++. .+-.+.+.-.+-..+.+.|+.+.|.+++++..-.--..-...
T Consensus 8 ~~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~-------~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~ 77 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH---DPNALINLLQK-------NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS 77 (360)
T ss_pred HHHHHHHHHHHHHHHcc---CHHHHHHHHHH-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555543 22222233322 111334444555678899999999888887753211000111
Q ss_pred HHHH--------HHHhCCCCCChHhHHHH---HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH-hcCChHH
Q 048780 206 YNTL--------FMAINNVPPDSHVYTTY---IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC-KIGRLKI 273 (325)
Q Consensus 206 ~~~l--------l~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~ 273 (325)
++.. .+.......|...|-++ |..+.+.|.+.-|+++.+-+...+..-|+.....+|+.|+ ++++++-
T Consensus 78 F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~ 157 (360)
T PF04910_consen 78 FSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQW 157 (360)
T ss_pred hhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHH
Confidence 1100 00112233355555554 6778899999999999999998876657777777888776 6677877
Q ss_pred HHHHHHHHh
Q 048780 274 AWDIFHMLM 282 (325)
Q Consensus 274 a~~~~~~~~ 282 (325)
..++.+...
T Consensus 158 Li~~~~~~~ 166 (360)
T PF04910_consen 158 LIDFSESPL 166 (360)
T ss_pred HHHHHHhHh
Confidence 777777654
No 346
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=63.29 E-value=71 Score=24.99 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=28.3
Q ss_pred CCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048780 20 TPN-MVTFNSLIKGLCTEGRILEAARLFKKLNVFC 53 (325)
Q Consensus 20 ~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 53 (325)
.|+ +.+||-|--.+...|+++.|.+.|+...+..
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 444 5678988888999999999999999988753
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.78 E-value=40 Score=28.18 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=53.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
-.-|.+.|.+++|++.+..-... .| |++++..-..+|.+...+..|+.=...... .-...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 34588899999999999765543 45 888888888899999888877766555441 1124466676665
Q ss_pred ChHHHHHHHHH
Q 048780 306 QHQKANGLLLD 316 (325)
Q Consensus 306 ~~~~a~~~~~~ 316 (325)
...+++.-..+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 54444444433
No 348
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.67 E-value=33 Score=24.35 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 048780 3 RASGGFVLLGRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 59 (325)
++++.+.+|+.+.+.. ......-..-|.-++.|.++++++++..+.+.+. +||..
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 4567788888887632 2233444555667788999999999999888875 55543
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=61.77 E-value=95 Score=25.97 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=44.1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 048780 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
....+|..+...+.+.|+++.|...+..+...+..... .+..+.-.-+......|+..+|...++.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~--------------~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES--------------LLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC--------------CCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556777777888888888888888877764322110 0223333336666677888888888877
Q ss_pred Hhh
Q 048780 246 IGN 248 (325)
Q Consensus 246 m~~ 248 (325)
...
T Consensus 210 ~~~ 212 (352)
T PF02259_consen 210 LLK 212 (352)
T ss_pred HHH
Confidence 766
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.58 E-value=1.5e+02 Score=28.27 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHH
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (325)
--++..+.+..+.+.+..+.+... + -++..|..+++.+++.+.++...+...+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g-~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLG-K----EDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhC-c----cChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 345677777788888888777665 2 2778899999999999866555444443
No 351
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=60.44 E-value=84 Score=29.06 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHH------HHHHHHHHH
Q 048780 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL------EAMKVFSAI 246 (325)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~m 246 (325)
+|+.+|..+|++..+.++++.+.... .+-+.-...+|..|+...+.|.++ .|.+.++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~---------------~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a 97 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN---------------KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA 97 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC---------------cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 79999999999999999999988653 112223445677788888888754 344444444
Q ss_pred hhCCCCcCHHHHHHHHHHHH
Q 048780 247 GNHKCVLTIETCNCLIDGLC 266 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~ 266 (325)
. +.-|..||..|+.+-.
T Consensus 98 ~---ln~d~~t~all~~~sl 114 (1117)
T COG5108 98 R---LNGDSLTYALLCQASL 114 (1117)
T ss_pred h---cCCcchHHHHHHHhhc
Confidence 3 3346677776665544
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.40 E-value=1.4e+02 Score=27.60 Aligned_cols=63 Identities=13% Similarity=0.064 Sum_probs=37.2
Q ss_pred CCCcchHHHHHHHHHhcCC-CCc-----hhhHHHHHH--HHHhcCCHHHHHHHHH--------HHHhcCCCCCchhHHH
Q 048780 1 MGRASGGFVLLGRILMSCF-TPN-----MVTFNSLIK--GLCTEGRILEAARLFK--------KLNVFCCDPNVITFNT 63 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~-~~~-----~~~~~~ll~--~~~~~g~~~~a~~~~~--------~m~~~g~~~~~~~~~~ 63 (325)
.|++..|...++.+....- .|+ ...+..++. .+...|+.+.|+..|. .....+...+..++..
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 3678888888888876521 121 223333333 3345699999999997 4444444444444433
No 353
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=60.35 E-value=96 Score=25.57 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHC-CCCCCcccHH
Q 048780 127 KMEEANCLLEVMIQR-DVNPNTCTYN 151 (325)
Q Consensus 127 ~~~~a~~~~~~m~~~-g~~~~~~~~~ 151 (325)
+++..+++++++... .+..|..+|.
T Consensus 126 ~~~~il~~~~~~ag~~~l~~d~~v~~ 151 (300)
T TIGR03814 126 KLERILEFVRKLAGNRSISIDEEVAQ 151 (300)
T ss_pred HHHHHHHHHHHHhCCCCCccCHHHHH
Confidence 345555666655544 4455544443
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.86 E-value=96 Score=25.39 Aligned_cols=127 Identities=14% Similarity=0.080 Sum_probs=72.3
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 117 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
-+.+...+.+++++|...+.+....|+..+..+.+- ...+..-+...|...|+...--+......+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nE--------------qE~tvlel~~lyv~~g~~~~l~~~i~~sre 73 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNE--------------QEATVLELFKLYVSKGDYCSLGDTITSSRE 73 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhH--------------HHHHHHHHHHHHHhcCCcchHHHHHHhhHH
Confidence 355677889999999999999999999888766653 233444455666666665444333322221
Q ss_pred ----cCCCCChhhHHHHHHHhCCCCCC------------------------hHhHHHHHHHHHHcCCHHHHHHHHH----
Q 048780 197 ----EGIRADATTYNTLFMAINNVPPD------------------------SHVYTTYIDGLYKNGFVLEAMKVFS---- 244 (325)
Q Consensus 197 ----~g~~~~~~~~~~ll~~~~~~~~~------------------------~~~~~~l~~~~~~~~~~~~a~~~~~---- 244 (325)
-.-........+++....+.+.+ ...=.-++..+.+.|.+.+|+.+..
T Consensus 74 ~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 74 AMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 11112223333343322222211 1112345777888999999887654
Q ss_pred HHhhCCCCcCHHH
Q 048780 245 AIGNHKCVLTIET 257 (325)
Q Consensus 245 ~m~~~~~~~~~~~ 257 (325)
++++.+-+|+..+
T Consensus 154 ElKk~DDK~~Li~ 166 (421)
T COG5159 154 ELKKYDDKINLIT 166 (421)
T ss_pred HHHhhcCccceee
Confidence 4445454555443
No 355
>PRK05414 urocanate hydratase; Provisional
Probab=59.84 E-value=59 Score=28.81 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=32.4
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 048780 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204 (325)
Q Consensus 125 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 204 (325)
..++++|+++.++.++.+-..+ .|-.-.|.++|.++.+.|+.||..
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~S----------------------------------Ig~~GNaadv~~~l~~~~i~pDlv 261 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPLS----------------------------------IGLLGNAADVLPELVRRGIRPDLV 261 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCceE----------------------------------EEEeccHHHHHHHHHHcCCCCCcc
Confidence 4677888888888877764432 234445666677777777776665
Q ss_pred hHHHH
Q 048780 205 TYNTL 209 (325)
Q Consensus 205 ~~~~l 209 (325)
|-.+-
T Consensus 262 tDQTS 266 (556)
T PRK05414 262 TDQTS 266 (556)
T ss_pred CcCcc
Confidence 54443
No 356
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=59.54 E-value=25 Score=21.69 Aligned_cols=33 Identities=12% Similarity=-0.021 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEG 37 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 37 (325)
.+.|..++..+.... +.++..||++-+.+.|++
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHHHcc
Confidence 456666777665543 678899999999887764
No 357
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.46 E-value=76 Score=26.21 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=51.6
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----------cCChHH
Q 048780 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----------EGQHQK 309 (325)
Q Consensus 240 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 309 (325)
.++|+.|++.++.|.-..|..+.-.+.+.=.+..+..+|+.+.. |..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 46788888889999988888888778877788899999998873 33336677766653 366665
Q ss_pred HHHHHHH
Q 048780 310 ANGLLLD 316 (325)
Q Consensus 310 a~~~~~~ 316 (325)
..++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 5555543
No 358
>PLN03025 replication factor C subunit; Provisional
Probab=59.26 E-value=1e+02 Score=25.62 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=38.1
Q ss_pred hCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-----------CCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048780 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH-K-----------CVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (325)
..++..+......++.. ..|+...+...++..... + ..+.......++.+.. .+++++|...+..
T Consensus 173 ~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~~~~~~a~~~l~~ 249 (319)
T PLN03025 173 AEKVPYVPEGLEAIIFT--ADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-KGKFDDACDGLKQ 249 (319)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 34555555555555543 246777777766643211 1 0122222333444433 4667777777777
Q ss_pred HhhCCCCCCcH
Q 048780 281 LMQNPGLTPDV 291 (325)
Q Consensus 281 ~~~~~~~~p~~ 291 (325)
+. ..|+.|..
T Consensus 250 ll-~~g~~~~~ 259 (319)
T PLN03025 250 LY-DLGYSPTD 259 (319)
T ss_pred HH-HcCCCHHH
Confidence 76 45665553
No 359
>PRK09857 putative transposase; Provisional
Probab=59.18 E-value=68 Score=26.39 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048780 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
+..++......++.++..++++.+.+. ..+.....-++..-+.+.|.-+++.++.++|...|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~--~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER--SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 556666666778777777777766522 22333344456666777787788899999999988864
No 360
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.69 E-value=33 Score=19.68 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHH
Q 048780 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64 (325)
Q Consensus 27 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 64 (325)
..+.-++.+.|++++|.+..+.+.+. .|+......|
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 34566788999999999999999886 6776555444
No 361
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=58.01 E-value=55 Score=22.04 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCcHHhH---HHHH
Q 048780 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG--RLKIAWDIFHMLMQNPGLTPDVVTY---NIMI 298 (325)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~---~~li 298 (325)
..++..|...++.++|..-++++.... --......++..+...+ .-+.+..++..+. ..+..+....- ..++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~-~~~~~~~~~~~~gf~~~l 82 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLC-KRKLISKEQFQEGFEDLL 82 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-HTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHH
Confidence 455778888899999999998874331 22334444555555442 2334666677776 34443332222 2222
Q ss_pred HHHHcc-----CChHHHHHHHHHHHHcCCCC
Q 048780 299 HGFCKE-----GQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 299 ~~~~~~-----g~~~~a~~~~~~m~~~g~~p 324 (325)
..+-.. ..++...+++..+...|+-|
T Consensus 83 ~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 83 ESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred hHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 222111 13444555666666666544
No 362
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=57.51 E-value=1.3e+02 Score=26.13 Aligned_cols=172 Identities=14% Similarity=0.042 Sum_probs=96.8
Q ss_pred CchhhHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCCchh-HHHHH-----------HHHHHHHHHHHHhcCCccCccH
Q 048780 21 PNMVTFNSLIK-GLCTEGRILEAARLFKKLNVFCCDPNVIT-FNTLA-----------LVALNLFEEMVNEFGVICKPDV 87 (325)
Q Consensus 21 ~~~~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~l~-----------~~a~~~~~~~~~~~~~~~~~~~ 87 (325)
|....|..|-. .+.-.|+.++|.++--...+. |... +...+ +.+...|++....+ |+-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-----pdh 236 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYNDNADKAINHFQQALRLD-----PDH 236 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccchhHHHHhcccccccccchHHHHHHHhhhhccC-----hhh
Confidence 55555555443 335668888887776665543 2222 22222 66677777766543 443
Q ss_pred HHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCc
Q 048780 88 VTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167 (325)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~ 167 (325)
..--++-..+-+ ...+..=-+-..+.|.+..|.+.|.+.... .|+ ...++
T Consensus 237 ~~sk~~~~~~k~------------le~~k~~gN~~fk~G~y~~A~E~Yteal~i--dP~----------------n~~~n 286 (486)
T KOG0550|consen 237 QKSKSASMMPKK------------LEVKKERGNDAFKNGNYRKAYECYTEALNI--DPS----------------NKKTN 286 (486)
T ss_pred hhHHhHhhhHHH------------HHHHHhhhhhHhhccchhHHHHHHHHhhcC--Ccc----------------ccchh
Confidence 332222111111 112222334567889999999999877654 443 34556
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...|.....+..+.|+.++|+.--++..+-. +.-. ..+-.-..++.-.+++++|.+-++...
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD----~syi--------------kall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKID----SSYI--------------KALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcC----HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888899999888877766531 1111 112222344555667777777776665
Q ss_pred hC
Q 048780 248 NH 249 (325)
Q Consensus 248 ~~ 249 (325)
+.
T Consensus 349 q~ 350 (486)
T KOG0550|consen 349 QL 350 (486)
T ss_pred hh
Confidence 43
No 363
>PRK12357 glutaminase; Reviewed
Probab=57.36 E-value=1.1e+02 Score=25.46 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=32.3
Q ss_pred cCccHHHHHHHHHHHHhc-CchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHH
Q 048780 83 CKPDVVTCTNIIDGLCKD-GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151 (325)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 151 (325)
..|+-..||+++..=... |.-...-+.....+-..+|.......+++..++.++++-...+..|..+|.
T Consensus 98 ~EPSG~~FNSi~~Le~~~~g~P~NPmINAGAI~~~sll~g~~~~~r~~~il~~~~~lag~~l~~d~~v~~ 167 (326)
T PRK12357 98 VEPTGDAFNSIIRLEIHKPGKPFNPMINAGAITVASLLPGTSVQEKLESLYVLIEKMIGKRPAINEEVFQ 167 (326)
T ss_pred CCCCCCCcchhhhhhhcCCCCCCCCcccHHHHHHHHHhccCCchHHHHHHHHHHHHHhCCCCccCHHHHH
Confidence 667777777775432221 211111112223344445543333334566666666666554555544443
No 364
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.91 E-value=8.4 Score=27.09 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 048780 305 GQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 305 g~~~~a~~~~~~m~~~g~~pd 325 (325)
|.-..|..+|+.|.+.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 555568999999999999997
No 365
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=56.66 E-value=40 Score=20.07 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH-----hcCChHHHHHH
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC-----KIGRLKIAWDI 277 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-----~~g~~~~a~~~ 277 (325)
+.+.|++-+|-++++.+=.....+....+..+|...+ +.|+...|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3445666666666666643222234444444444332 44555555544
No 366
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.67 E-value=55 Score=21.31 Aligned_cols=65 Identities=11% Similarity=-0.002 Sum_probs=34.9
Q ss_pred HHHcCCHHHHHHHHHHHh----hCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhH
Q 048780 230 LYKNGFVLEAMKVFSAIG----NHKCVLT----IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~----~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 294 (325)
..+.|++..|.+-+.+.- ..+.... ....-.+.......|++++|...+++..+-..-.-|..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l 80 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCL 80 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 456788888766554443 2332221 1222334445667788888888887776433333343333
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.99 E-value=1.2e+02 Score=24.83 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 048780 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252 (325)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 252 (325)
.=|++++..+++.+++...-+--+.-.+ ++ ..+...=|-.|.+.+....+.++-.......-.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEk---------------lP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~N 150 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEK---------------LP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSN 150 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCccc---------------CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc
Confidence 3478888889998888765444332111 11 122222244567788888777777655443222
Q ss_pred cCHHHHHHHHHHHH-----hcCChHHHHHHH
Q 048780 253 LTIETCNCLIDGLC-----KIGRLKIAWDIF 278 (325)
Q Consensus 253 ~~~~~~~~ll~~~~-----~~g~~~~a~~~~ 278 (325)
-+...|..+...|. =.|.+++|+++.
T Consensus 151 q~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 151 QSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 23334666555554 357777777765
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.98 E-value=1.2e+02 Score=24.98 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
....|..+|.+.+|.++.+.....+ +.+...+-.|++.++..||--.|.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3566667777777777776666554 346666777777777777654554444443
No 369
>PRK00971 glutaminase; Provisional
Probab=54.89 E-value=1.2e+02 Score=25.13 Aligned_cols=68 Identities=6% Similarity=0.032 Sum_probs=28.1
Q ss_pred cCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-CCCCCcccH
Q 048780 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR-DVNPNTCTY 150 (325)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~ 150 (325)
..|+...||+++..=...|.-...-+.....+-..+|..-....+++..++.++++... .+..|..+|
T Consensus 89 ~EPSG~~FNSi~~Le~~~g~P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~~i~~d~~v~ 157 (307)
T PRK00971 89 KEPSGDPFNSLVQLELEQGKPRNPMINAGAIVVTDLLQGRLSEEPCERLLEFVRQLAGNPDILYDEVVA 157 (307)
T ss_pred CCCCCCCCcchhhhhccCCCCCCccccHHHHHHHHhhccCCcHHHHHHHHHHHHHHhCCCCCcccHHHH
Confidence 56666666666543222221111111112233334443322233455556666655532 344444333
No 370
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.75 E-value=1.2e+02 Score=25.07 Aligned_cols=71 Identities=10% Similarity=0.169 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 048780 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267 (325)
Q Consensus 188 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 267 (325)
.++++.|.+.++.|.-..+..+ .-.+.+.=.+.+.+.+|+.+... +.-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWi-----------------tLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWI-----------------TLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHH-----------------HHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 5678888888888887777776 33445555677888888888753 3337777777763
Q ss_pred ----------cCChHHHHHHHHH
Q 048780 268 ----------IGRLKIAWDIFHM 280 (325)
Q Consensus 268 ----------~g~~~~a~~~~~~ 280 (325)
.|++....++++.
T Consensus 321 mlil~Re~il~~DF~~nmkLLQ~ 343 (370)
T KOG4567|consen 321 MLILVRERILEGDFTVNMKLLQN 343 (370)
T ss_pred HHHHHHHHHHhcchHHHHHHHhc
Confidence 4677766666654
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.48 E-value=2.1e+02 Score=27.76 Aligned_cols=122 Identities=14% Similarity=0.023 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCcc---HHHHHHHHHH-HHh
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPD---VVTCTNIIDG-LCK 99 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~---~~~~~~ll~~-~~~ 99 (325)
.-|..|+..|...|+.++|++++.+..... .-...+.....+..+ +-+.+.+ .++ ..+|...+-. .-.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~-~~~d~~~~~~~e~ii---~YL~~l~----~~~~~Li~~y~~wvl~~~p~ 576 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDED-SDTDSFQLDGLEKII---EYLKKLG----AENLDLILEYADWVLNKNPE 576 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccc-cccccchhhhHHHHH---HHHHHhc----ccchhHHHHHhhhhhccCch
Confidence 458899999999999999999999987631 101222222223322 2233332 222 2222221100 000
Q ss_pred cCc-h-------hhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 048780 100 DGF-M-------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159 (325)
Q Consensus 100 ~~~-~-------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 159 (325)
.|- + ....+.++ .+-.|......+-+...++.+....-.++..-.+.++..|+.
T Consensus 577 ~gi~Ift~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 577 AGIQIFTSEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hheeeeeccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 000 0 00111221 223456667778888888888877666666666666666654
No 372
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.50 E-value=1.9e+02 Score=26.89 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=17.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048780 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
...++.++.. |+...++++++++.+.|..|
T Consensus 254 i~~LldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 254 VFRLIDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 3344444444 56666666666666666543
No 373
>PRK11906 transcriptional regulator; Provisional
Probab=53.01 E-value=1.6e+02 Score=25.94 Aligned_cols=115 Identities=11% Similarity=-0.083 Sum_probs=76.3
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 048780 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204 (325)
Q Consensus 125 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 204 (325)
..+..+|.+.-+...+.+ |+ |......+-.+..-.++++.|..+|++....+ |
T Consensus 317 ~~~~~~a~~~A~rAveld--~~--------------------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--P--- 369 (458)
T PRK11906 317 ELAAQKALELLDYVSDIT--TV--------------------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--T--- 369 (458)
T ss_pred hHHHHHHHHHHHHHHhcC--CC--------------------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--C---
Confidence 345667777777776653 22 56666666666677788999999999988752 2
Q ss_pred hHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048780 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH-KCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 205 ~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (325)
....+|...-..+.-+|+.++|.+.+++..+. ..+.-.......++.|+..+ ++.|.+++-+
T Consensus 370 -------------n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 370 -------------DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred -------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 23445555566677789999999999885543 22223334444566777554 6777777754
No 374
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.66 E-value=1.3e+02 Score=24.72 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=37.8
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 117 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
.++....+.+++...++.++.+. +...-...++.....|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~---------------------------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK---------------------------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35555666666666666666654 233445577888899999999999998876
Q ss_pred c
Q 048780 197 E 197 (325)
Q Consensus 197 ~ 197 (325)
.
T Consensus 156 ~ 156 (291)
T PF10475_consen 156 L 156 (291)
T ss_pred H
Confidence 3
No 375
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.61 E-value=1.9e+02 Score=26.41 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=76.6
Q ss_pred HHccCcHHHHHHHHHHHHH-------CCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC-----CHHHHHH
Q 048780 122 LSKDGKMEEANCLLEVMIQ-------RDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR-----NVEDAVS 189 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~ 189 (325)
+....+++.|+.+|+.+.+ .|. .....-+-.+|.+.. +.+.|..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~------------------------~~a~~~lg~~Y~~g~~~~~~d~~~A~~ 314 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGL------------------------PPAQYGLGRLYLQGLGVEKIDYEKALK 314 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcC------------------------CccccHHHHHHhcCCCCccccHHHHHH
Confidence 4456778888888887766 332 123344445555532 6677888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHH-HcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH--
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY-KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC-- 266 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-- 266 (325)
++...-+.|.+....-...+ .... ...+...|.+.|......|.. ...-+..++-...
T Consensus 315 ~~~~aA~~g~~~a~~~lg~~------------------~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 315 LYTKAAELGNPDAQYLLGVL------------------YETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLG 375 (552)
T ss_pred HHHHHHhcCCchHHHHHHHH------------------HHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCC
Confidence 88887777643221111111 1111 124566777777777766633 2222222111111
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048780 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 267 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
-..+...|..++.+.. ..| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 376 v~r~~~~A~~~~k~aA-~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAA-EKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHH-Hcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2235666777777666 444 2222222222333333 55555555555554443
No 376
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.60 E-value=1e+02 Score=23.30 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCccCcc--HHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 66 LVALNLFEEMVNEFGVICKPD--VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 66 ~~a~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
+.|+.+|+.+.+.. ..|. ......+| -...+-.|.+.|.+++|.+++++....
T Consensus 86 ESAl~v~~~I~~E~---~~~~~lhe~i~~li--------------------k~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 86 ESALMVLESIEKEF---SLPETLHEEIRKLI--------------------KEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHhc---CCcHHHHHHHHHHH--------------------HHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 88999999988876 2221 11122222 133566899999999999999998874
No 377
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=51.42 E-value=51 Score=27.75 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHHHHHHHH
Q 048780 27 NSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTLALVALNLFEEMV 76 (325)
Q Consensus 27 ~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~a~~~~~~~~ 76 (325)
=.|++.|.+.|.+++|+++.....+.. --|+......+..++......|.
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml 160 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQML 160 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 468999999999999999988876543 24666666666655544444443
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.05 E-value=1.5e+02 Score=24.84 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=68.7
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh---cCChHHHHHHHHHHhhC-----CCC-
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK---IGRLKIAWDIFHMLMQN-----PGL- 287 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~-----~~~- 287 (325)
+.+...+-.+|..+.+..+.++..+-|+.+...... +...|...|..... .-.++.+..+|...... .+.
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~ 140 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRM 140 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhcccc
Confidence 345667777899999999999999999999876422 67778777776554 22455655555544311 111
Q ss_pred ---CCc----H---HhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048780 288 ---TPD----V---VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 288 ---~p~----~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 322 (325)
.+. . ..+..+..-+..+|-.+.|..+++.+.+.++
T Consensus 141 ~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 141 TSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 111 1 1223333344678999999999999998776
No 379
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=50.19 E-value=51 Score=22.36 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=37.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHH
Q 048780 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 273 (325)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-+.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 455566666677899999999888877788888888888888886543
No 380
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.16 E-value=63 Score=20.46 Aligned_cols=26 Identities=19% Similarity=0.019 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048780 28 SLIKGLCTEGRILEAARLFKKLNVFC 53 (325)
Q Consensus 28 ~ll~~~~~~g~~~~a~~~~~~m~~~g 53 (325)
+++..+.++.--++|+++++.|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 46777888899999999999999887
No 381
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=49.95 E-value=2.3e+02 Score=26.79 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=40.8
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---C----------CCcHHhHHHHHHHHHccCChHHHHHH
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG---L----------TPDVVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~----------~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
...|+..+......+++.. .|+...+..+++++.. .| + ..+......|+.++.. ++...++.+
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia-~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~ 267 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA-LGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAK 267 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 3345555655555555443 3666666666655441 11 1 1123334445555554 677777777
Q ss_pred HHHHHHcCCCC
Q 048780 314 LLDMEETGLEP 324 (325)
Q Consensus 314 ~~~m~~~g~~p 324 (325)
+++|.+.|+.+
T Consensus 268 l~~L~~~G~d~ 278 (709)
T PRK08691 268 AQEMAACAVGF 278 (709)
T ss_pred HHHHHHhCCCH
Confidence 77777777643
No 382
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=49.92 E-value=1.1e+02 Score=22.93 Aligned_cols=169 Identities=19% Similarity=0.081 Sum_probs=95.6
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHH-HHHhcCCHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN-GYCKDRNVEDAVS 189 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~ 189 (325)
....+......+...++...+.+.+.........+ ......... .+...|+++.|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~a~~ 151 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP----------------------DLAEALLALGALYELGDYEEALE 151 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----------------------chHHHHHHHHHHHHcCCHHHHHH
Confidence 33444455555555556666666666555432221 111222222 6777788888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 269 (325)
.+...... .|. .......+......+...++.+.+...+..............+..+-..+...+
T Consensus 152 ~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 152 LYEKALEL--DPE-------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHhc--CCC-------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 88777442 110 012233344444445667788888888877765432213566777777777777
Q ss_pred ChHHHHHHHHHHhhCCCCCCc-HHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 270 RLKIAWDIFHMLMQNPGLTPD-VVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+++.+...+...... .|+ ...+..+...+...+..+.+...+++...
T Consensus 217 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888776622 232 34444444444566667777777766554
No 383
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.66 E-value=36 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC
Q 048780 297 MIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
+++-+.++...++|+++++.|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3555667777788888888887776
No 384
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=48.44 E-value=43 Score=22.06 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=13.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 048780 34 CTEGRILEAARLFKKLNVFCC 54 (325)
Q Consensus 34 ~~~g~~~~a~~~~~~m~~~g~ 54 (325)
.+..++..+..+|..+.+.|.
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gl 55 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGR 55 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCC
Confidence 344566677777777777664
No 385
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.44 E-value=60 Score=19.61 Aligned_cols=50 Identities=4% Similarity=0.074 Sum_probs=31.5
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 267 (325)
.|....++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555666677777777777777777777777664 355666555555554
No 386
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=48.19 E-value=45 Score=22.91 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
..++......+..-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4556667777778888999999988887778777777777777777543
No 387
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.00 E-value=1.6e+02 Score=24.55 Aligned_cols=59 Identities=8% Similarity=-0.057 Sum_probs=44.7
Q ss_pred chHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 048780 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65 (325)
Q Consensus 5 ~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 65 (325)
+.-+.+++..++++ +.+...+-.+|..+.+..+.++..+-++++.... +-+...|...+
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL 106 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYL 106 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 45677888877774 5677888889999999999999999999998762 22555665555
No 388
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=47.77 E-value=1.6e+02 Score=24.35 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=32.3
Q ss_pred cCCCCChhhHHHHHH--HhCCCCCChHhHHHHHH--HHHH----cCCHHHHHHHHHHHhhC-CCCcCHHHH
Q 048780 197 EGIRADATTYNTLFM--AINNVPPDSHVYTTYID--GLYK----NGFVLEAMKVFSAIGNH-KCVLTIETC 258 (325)
Q Consensus 197 ~g~~~~~~~~~~ll~--~~~~~~~~~~~~~~l~~--~~~~----~~~~~~a~~~~~~m~~~-~~~~~~~~~ 258 (325)
-|..|+-..|++++. ...+.+.|+.+-.-.|. .+.. ..+++..++.++++-.. .+..|..+|
T Consensus 80 VG~ePSG~~FNsi~~Le~~~g~P~NPmINAGAI~~~sll~~~~~~~~~~~il~~~~~~ag~~~l~~d~~v~ 150 (300)
T TIGR03814 80 VGVEPSGDPFNSIVQLELEPGKPRNPFINAGAIAVTSLLPGRTSEEKLERILEFVRKLAGNRSISIDEEVA 150 (300)
T ss_pred hCCCCCCCCccchhhhhccCCCCCCccccHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 377888888888864 33455555444322222 2221 12344455555555444 455666665
No 389
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=47.72 E-value=1.8e+02 Score=24.88 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=84.7
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
-++-.++...+.++.+++.|+...+.-...+ .......+|-.|-..|.+..++++|.-+.....
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~----------------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNND----------------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccC----------------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 3466677777889999999988765432221 112245678888899999999999887766554
Q ss_pred Hc----CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh----hCCCCcC-HHHHHHHHHHHH
Q 048780 196 SE----GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG----NHKCVLT-IETCNCLIDGLC 266 (325)
Q Consensus 196 ~~----g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~-~~~~~~ll~~~~ 266 (325)
+- ++.--..-|. ....-.|..++...|.+..|.+.-++.. ..|-.+. ......+.+.|.
T Consensus 190 ~lv~s~~l~d~~~kyr------------~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 190 ELVNSYGLKDWSLKYR------------AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred HHHHhcCcCchhHHHH------------HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 32 2111111111 1123344556667777777766665543 3442222 233455677788
Q ss_pred hcCChHHHHHHHHHHh
Q 048780 267 KIGRLKIAWDIFHMLM 282 (325)
Q Consensus 267 ~~g~~~~a~~~~~~~~ 282 (325)
..|+.+.|+.-|+...
T Consensus 258 ~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAM 273 (518)
T ss_pred hcccHhHHHHHHHHHH
Confidence 8999998888777654
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.64 E-value=25 Score=33.33 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=21.0
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (325)
+..+|+++.|++.-..+- +..+|..|.......|+.+-|+..|+.
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~ 697 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQR 697 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 334455555544433321 334455555555555555555544444
No 391
>COG5210 GTPase-activating protein [General function prediction only]
Probab=47.07 E-value=2e+02 Score=25.82 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=13.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCC
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKC 251 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~ 251 (325)
+..+.+.-..+.+..+++.+--.|.
T Consensus 384 l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 384 LTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 5555555555555555555544443
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.05 E-value=88 Score=21.17 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
|..|+.-|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555556666666666655544
No 393
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=47.04 E-value=1.7e+02 Score=24.44 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---cHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP---DVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
...+|..+...+.+.|.++.|...+..+. ..+... .+...-.-.+..-..|+.++|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~-~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLF-QLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHh-ccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667777777777777777777665 221111 222233334455556666777777666655
No 394
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=46.97 E-value=76 Score=22.22 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCCCch-hhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 6 GGFVLLGRILMSCFTPNM-VTFNSLIKGLCTEGRILEAARLFK 47 (325)
Q Consensus 6 ~A~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~ 47 (325)
+..++|..|..+|+-... ..|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555555443322 234444444555556666655554
No 395
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.95 E-value=58 Score=29.09 Aligned_cols=22 Identities=9% Similarity=0.354 Sum_probs=17.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
+..-++....++-+++|++|.+
T Consensus 310 v~Sk~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 310 VESKCRSNSVEENLRIWEEMKK 331 (712)
T ss_pred ccccccCCCHHHHHHHHHHHhc
Confidence 4445677789999999999976
No 396
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.34 E-value=94 Score=21.25 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=25.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 263 (325)
++-+.++...++|+++++.|.+.| ..+...-+.|-.
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 666777888889999999888887 345544444433
No 397
>PRK10941 hypothetical protein; Provisional
Probab=46.29 E-value=1.6e+02 Score=23.93 Aligned_cols=81 Identities=10% Similarity=-0.045 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 301 (325)
..+.+-.+|.+.++++.|+.+.+.+...... ++.-+.----.|.+.|.+..|..=++...+...-.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3566777889999999999999999876522 455555555568899999999988888775665677777766666655
Q ss_pred Hc
Q 048780 302 CK 303 (325)
Q Consensus 302 ~~ 303 (325)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 44
No 398
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=46.02 E-value=65 Score=27.81 Aligned_cols=246 Identities=11% Similarity=0.003 Sum_probs=134.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHH--h------cC-CCCCchhHHHHH--
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMV----TFNSLIKGLCTEGRILEAARLFKKLN--V------FC-CDPNVITFNTLA-- 65 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~--~------~g-~~~~~~~~~~l~-- 65 (325)
+|+.+..+.+|+...+-| .-|.. .|..|-.+|.-.+++++|++....=. . .| -+.+...=|++-
T Consensus 30 ~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred ccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 478888999999999887 34443 45666667777788999987653211 1 11 111222222221
Q ss_pred ---H----HHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc------hhhcCCCCC---------------------
Q 048780 66 ---L----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGMRPD--------------------- 111 (325)
Q Consensus 66 ---~----~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~~--------------------- 111 (325)
+ .+.+-++-.++.|+. ......+-.+-..|...|. -++.|-.++
T Consensus 109 G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222333333444421 1122333344555555554 011111111
Q ss_pred --------hhhHHHHHHHHHccCcHHHHHHHHHHHHH----CCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 048780 112 --------VVTLNVMTDNLSKDGKMEEANCLLEVMIQ----RDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179 (325)
Q Consensus 112 --------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~ 179 (325)
-..|..|-+.|.-.|+++.|+...+.-.. -|-+. .....+..+-.++.
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA--------------------aeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA--------------------AERRAHSNLGNCHI 246 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH--------------------HHHHhhcccchhhh
Confidence 12344455555566777777766543221 12111 13446777888889
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh----C-CCCcC
Q 048780 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN----H-KCVLT 254 (325)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~-~~~~~ 254 (325)
-.|+++.|.+.|+.-...-+..... ......+-+|-.+|.-...+++|+..+.+-.. . +..-.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r------------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNR------------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcch------------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999988654321111100 11233455667777777778888887754322 1 11124
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 255 IETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
...+.+|-.+|...|..++|+.+.+.-
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 567888889999999888888776543
No 399
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.98 E-value=2.2e+02 Score=25.40 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 252 (325)
+..++++...+.|++++|...-..|....++
T Consensus 359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie 389 (831)
T PRK15180 359 TLRCRLRSLHGLARWREALSTAEMMLSNEIE 389 (831)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHhccccC
Confidence 3334455555555555555555555444443
No 400
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.97 E-value=2.3e+02 Score=25.62 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=43.5
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--C----------CCcHHhHHHHHHHHHccCChHHHHHHH
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG--L----------TPDVVTYNIMIHGFCKEGQHQKANGLL 314 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----------~p~~~~~~~li~~~~~~g~~~~a~~~~ 314 (325)
.+.|+..+......++... .|+...+...++.+.. .+ + .+.......+++++ ..++.++|..++
T Consensus 189 ~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~-~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l 264 (504)
T PRK14963 189 EAEGREAEPEALQLVARLA--DGAMRDAESLLERLLA-LGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGA 264 (504)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 3445555555555444433 3666666666655432 11 1 12233344556666 448889999999
Q ss_pred HHHHHcCCCC
Q 048780 315 LDMEETGLEP 324 (325)
Q Consensus 315 ~~m~~~g~~p 324 (325)
+++...|..|
T Consensus 265 ~~Ll~~G~~~ 274 (504)
T PRK14963 265 AQLYRDGFAA 274 (504)
T ss_pred HHHHHcCCCH
Confidence 9999888765
No 401
>PRK12357 glutaminase; Reviewed
Probab=45.82 E-value=1.8e+02 Score=24.36 Aligned_cols=63 Identities=6% Similarity=0.123 Sum_probs=33.9
Q ss_pred cCCCCChhhHHHHHH--HhC-CCCCChHhH------HHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 048780 197 EGIRADATTYNTLFM--AIN-NVPPDSHVY------TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259 (325)
Q Consensus 197 ~g~~~~~~~~~~ll~--~~~-~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 259 (325)
-|..|+-..|++++. ... +.+.|+.+- ++|+.......+++..++.++++-...+..|..+|.
T Consensus 96 VG~EPSG~~FNSi~~Le~~~~g~P~NPmINAGAI~~~sll~g~~~~~r~~~il~~~~~lag~~l~~d~~v~~ 167 (326)
T PRK12357 96 VDVEPTGDAFNSIIRLEIHKPGKPFNPMINAGAITVASLLPGTSVQEKLESLYVLIEKMIGKRPAINEEVFQ 167 (326)
T ss_pred hCCCCCCCCcchhhhhhhcCCCCCCCCcccHHHHHHHHHhccCCchHHHHHHHHHHHHHhCCCCccCHHHHH
Confidence 477888888888863 333 455554432 222322112223455566666665555666666653
No 402
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.75 E-value=2.7e+02 Score=26.46 Aligned_cols=81 Identities=10% Similarity=0.041 Sum_probs=41.4
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
.+...|..+|..+.. .+...-.++..+ ..++...-...+++.-..-.....+...-..|...|...++++.|..
T Consensus 453 L~p~vYemvLve~L~-~~~~~F~e~i~~-----Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~ 526 (846)
T KOG2066|consen 453 LKPLVYEMVLVEFLA-SDVKGFLELIKE-----WPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALP 526 (846)
T ss_pred cCchHHHHHHHHHHH-HHHHHHHHHHHh-----CChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHH
Confidence 456778888888877 333332222221 12222222222222222111122233334448888889999999988
Q ss_pred HHHHHHH
Q 048780 190 LCREMLS 196 (325)
Q Consensus 190 ~~~~m~~ 196 (325)
++-.+++
T Consensus 527 ~ylklk~ 533 (846)
T KOG2066|consen 527 IYLKLQD 533 (846)
T ss_pred HHHhccC
Confidence 7766543
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.38 E-value=84 Score=20.43 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=15.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 048780 297 MIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+.......|++++|.+.+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445666777877777777543
No 404
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.09 E-value=1.6e+02 Score=23.61 Aligned_cols=97 Identities=8% Similarity=-0.003 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
.+...-..+++...+++|-..|.+-..... ........-..|-+.|-.+....++..|+..++.--+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~------------~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAAD------------KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHH------------HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 344455566677777776665544322100 00111222234555566677778899999998875443
Q ss_pred C---CCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048780 250 K---CVLTIETCNCLIDGLCKIGRLKIAWDIFH 279 (325)
Q Consensus 250 ~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (325)
+ -.-+..+...|+.+| ..|+.+.+.+++.
T Consensus 220 p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 220 PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 2 122456778888888 5688888877653
No 405
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.07 E-value=1.4e+02 Score=22.91 Aligned_cols=94 Identities=9% Similarity=-0.029 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHH
Q 048780 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCV--LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (325)
.+...+...+++++|+..++........ ....+--.|-+.....|.+++|..+++... ..++. ......--+.+.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~--~~~~elrGDill 170 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHH--HHHHHHhhhHHH
Confidence 3466778899999999999877643211 111222335567778899999999999866 33321 111222335788
Q ss_pred ccCChHHHHHHHHHHHHcC
Q 048780 303 KEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 303 ~~g~~~~a~~~~~~m~~~g 321 (325)
..|+-++|..-|+.-.+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 9999999999998887765
No 406
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.60 E-value=1.2e+02 Score=21.88 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=43.7
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
++.+.+++.|.+++.. -..++..+...++.-.|.++++.+. ..+...+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~-~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELR-EEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHH-HhCCCCCHhHHHHHHHHHHHCCC
Confidence 4556667788776653 4566777787877789999999988 55555555555555666666553
No 407
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.56 E-value=3e+02 Score=26.60 Aligned_cols=144 Identities=9% Similarity=-0.021 Sum_probs=73.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-----------HhCCCCCChHhHHHHHHHHHHcC---C
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM-----------AINNVPPDSHVYTTYIDGLYKNG---F 235 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-----------~~~~~~~~~~~~~~l~~~~~~~~---~ 235 (325)
-|..++.-+++.+.+++|++++..-.... -..-|...+. ...+...+......++..+.+.+ .
T Consensus 532 d~~~vv~~~~q~e~yeeaLevL~~~~~~e---l~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~ 608 (911)
T KOG2034|consen 532 DYEFVVSYWIQQENYEEALEVLLNQRNPE---LFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYE 608 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchh---hHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCcccc
Confidence 46778888999999999998886542110 0011111110 11222233344455555555542 3
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC------hHH
Q 048780 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ------HQK 309 (325)
Q Consensus 236 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 309 (325)
...+...++.....-..-++..+|.++..|++..+- .....++......+- ...-....++.|.+.+. ...
T Consensus 609 ~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~-~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~ 685 (911)
T KOG2034|consen 609 ENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD-DLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLC 685 (911)
T ss_pred HHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc-chHHHHHHHhhcccc--ceecHHHHHHHHHHhCccceeeeHHH
Confidence 444555555544333345888999999999876553 333333333211111 12222445566666553 334
Q ss_pred HHHHHHHHHH
Q 048780 310 ANGLLLDMEE 319 (325)
Q Consensus 310 a~~~~~~m~~ 319 (325)
+.+++.++.+
T Consensus 686 ~l~l~~~aVd 695 (911)
T KOG2034|consen 686 MLNLFEDAVD 695 (911)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 408
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=44.22 E-value=1.9e+02 Score=24.14 Aligned_cols=78 Identities=9% Similarity=0.076 Sum_probs=50.6
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHh----------HHHHHH--HHHccCChHHHH
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT----------YNIMIH--GFCKEGQHQKAN 311 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----------~~~li~--~~~~~g~~~~a~ 311 (325)
.-..+.|+..|...+..++.. .-|++.+|+..++.+. ..|-..+... ...+.. ..+..++..+..
T Consensus 199 ~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls-~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v 275 (346)
T KOG0989|consen 199 KIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLS-LLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTV 275 (346)
T ss_pred HHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhh-ccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHH
Confidence 333556778888888777664 3588888888888775 3332222111 112222 235678889999
Q ss_pred HHHHHHHHcCCCC
Q 048780 312 GLLLDMEETGLEP 324 (325)
Q Consensus 312 ~~~~~m~~~g~~p 324 (325)
+..+++.+.|+.|
T Consensus 276 ~~~Rei~~sg~~~ 288 (346)
T KOG0989|consen 276 KRVREIMRSGYSP 288 (346)
T ss_pred HHHHHHHHhccCH
Confidence 9999999888875
No 409
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=44.17 E-value=1.3e+02 Score=22.31 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=36.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHH
Q 048780 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 273 (325)
++..+...+..-.|.++++.+.+.+..++..|.-.-|..+...|-+.+
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 345555556677899999999998888888887777888888886543
No 410
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=43.28 E-value=2.5e+02 Score=25.37 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHHHHcCCCC
Q 048780 305 GQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 305 g~~~~a~~~~~~m~~~g~~p 324 (325)
|+.++|..+++++...|..|
T Consensus 271 ~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 271 RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555554443
No 411
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=42.84 E-value=38 Score=21.66 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=34.1
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 253 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
|.+.....++..+.+ ++++++...+..+... |+.++ .....+........
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~-G~s~~-~Il~~l~~~l~~~~ 52 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVE-GYSAS-DILKQLHEVLVESD 52 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHT-T--HH-HHHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHc-CCCHH-HHHHHHHHHHHHhh
Confidence 556666777777655 6999999999999955 87665 45667777777763
No 412
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.47 E-value=1.6e+02 Score=22.70 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=37.0
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE-TCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
.....+.++..|...|+++.|.++|.-+.+.. ..|.. .|..=+.-+.+.+.-....+.++.|
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 45567788888888899999999888887654 33433 2333333344433333333444443
No 413
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.46 E-value=2.6e+02 Score=25.30 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=17.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048780 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
...++.++.. |+.+.+..++++|.+.|..|
T Consensus 249 i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 249 LFDILEALAA-KAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 3344444443 56666666777776666554
No 414
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.93 E-value=1.8e+02 Score=23.22 Aligned_cols=81 Identities=10% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHH
Q 048780 178 YCKDRNVEDAVSLCREMLSE-GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256 (325)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 256 (325)
+...|+..+|+.-++.-... |..-....+... -.|.+.....++..|.+ +++++|.+++.++-+.|..|..
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~------d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D- 273 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVC------DEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED- 273 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhcc------CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-
Confidence 34678888888877765543 222222222221 35667777777887776 6899999999999999988643
Q ss_pred HHHHHHHHHH
Q 048780 257 TCNCLIDGLC 266 (325)
Q Consensus 257 ~~~~ll~~~~ 266 (325)
..+.+.+.+-
T Consensus 274 ii~~~FRv~K 283 (333)
T KOG0991|consen 274 IITTLFRVVK 283 (333)
T ss_pred HHHHHHHHHH
Confidence 4456666553
No 415
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=2.1e+02 Score=24.02 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=82.2
Q ss_pred CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 048780 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205 (325)
Q Consensus 126 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 205 (325)
++.+....+++.+...+..|= |..+. ....+..|...+++|..+ ....+++-.+..+...+.
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~---Ye~lc-----e~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeen-------- 97 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPL---YEYLC-----ESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEEN-------- 97 (393)
T ss_pred cCHHHHHHHHHHHHhcccchH---HHHHH-----hhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHh--------
Confidence 355666667777777766551 11111 123444566666665543 222333333333333332
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh----hCCCCcCHHHHHHHHHH-HHhcCChHHHHHHHHH
Q 048780 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG----NHKCVLTIETCNCLIDG-LCKIGRLKIAWDIFHM 280 (325)
Q Consensus 206 ~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~ 280 (325)
.|-.--..++-....-|++.|+-+.|++.++.-. ..|.+.|...+.+=+.. |..+.-+.+-.+..+.
T Consensus 98 --------lGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~ 169 (393)
T KOG0687|consen 98 --------LGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKS 169 (393)
T ss_pred --------cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 0001112345555778899999999998886553 35667776655544433 2222223334444444
Q ss_pred HhhCCCCCCcH----HhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 281 LMQNPGLTPDV----VTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 281 ~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
+. +.|-.-+. .+|..+. |....++.+|-.+|-+.
T Consensus 170 li-E~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 170 LI-EEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDS 207 (393)
T ss_pred HH-HhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHH
Confidence 44 33433333 2333332 34456777777776554
No 416
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.29 E-value=2.7e+02 Score=25.02 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=61.9
Q ss_pred cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHH
Q 048780 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185 (325)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (325)
.|+..+......+. -...|++..|+.+++.....+ ....++..+...+. ..+...+..++.+....+...
T Consensus 196 Egi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg------~~~~~~~~~l~~si~~~d~~~ 265 (484)
T PRK14956 196 ENVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIG------YHGIEFLTSFIKSLIDPDNHS 265 (484)
T ss_pred cCCCCCHHHHHHHH--HHcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhC------CCCHHHHHHHHHHHHcCCcHH
Confidence 45555555544443 344599999999998866432 22345555544431 235666777777777766778
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHH
Q 048780 186 DAVSLCREMLSEGIRADATTYNTL 209 (325)
Q Consensus 186 ~a~~~~~~m~~~g~~~~~~~~~~l 209 (325)
.|+.++.+|.+.|..|.......+
T Consensus 266 ~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 266 KSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999988766554433
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.67 E-value=3.2e+02 Score=26.68 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHhCC-CCCChHhHHHHHHHHH---HcCCHHHHH
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA---TTYNTLFMAINN-VPPDSHVYTTYIDGLY---KNGFVLEAM 240 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~-~~~~~~~~~~l~~~~~---~~~~~~~a~ 240 (325)
...|..|+..|...|+.++|+++|.+....--.-|. ..+..++..... ..++. .++-.|. -..+.+.+.
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~----~Li~~y~~wvl~~~p~~gi 579 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENL----DLILEYADWVLNKNPEAGI 579 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccch----hHHHHHhhhhhccCchhhe
Confidence 345899999999999999999999998763100111 111111110000 01111 1111111 123344444
Q ss_pred HHHHHH---hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc
Q 048780 241 KVFSAI---GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303 (325)
Q Consensus 241 ~~~~~m---~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (325)
++|..- ....+.+ .-+-.|.+....+-+...++.+. ...-.++..-.+.++.-|..
T Consensus 580 ~Ift~~~~~~~~sis~------~~Vl~~l~~~~~~l~I~YLE~li-~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 580 QIFTSEDKQEAESISR------DDVLNYLKSKEPKLLIPYLEHLI-SDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eeeeccChhhhccCCH------HHHHHHhhhhCcchhHHHHHHHh-HhccccchHHHHHHHHHHHH
Confidence 444330 0011111 12344567777788888888887 33335566667777776653
No 418
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=40.51 E-value=2.2e+02 Score=23.93 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=44.9
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCcHHhHHHH-----------HHHHHccCChHHHH
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-GLTPDVVTYNIM-----------IHGFCKEGQHQKAN 311 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~l-----------i~~~~~~g~~~~a~ 311 (325)
+...+.|++.+......++..+. |+...+..-++++.--. +-..+......+ +.-+...|+..+|.
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~ 228 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKAL 228 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHH
Confidence 45556677777776666666554 55555544444443100 001221111111 22234568999999
Q ss_pred HHHHHHHHcCCCC
Q 048780 312 GLLLDMEETGLEP 324 (325)
Q Consensus 312 ~~~~~m~~~g~~p 324 (325)
++++++...|.+|
T Consensus 229 ~~l~~L~~~ge~p 241 (334)
T COG1466 229 RLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHcCCcH
Confidence 9999999999887
No 419
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.73 E-value=58 Score=22.20 Aligned_cols=26 Identities=19% Similarity=-0.008 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048780 28 SLIKGLCTEGRILEAARLFKKLNVFC 53 (325)
Q Consensus 28 ~ll~~~~~~g~~~~a~~~~~~m~~~g 53 (325)
+++..+.++...++|+++.+.|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 36777889999999999999999988
No 420
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=39.46 E-value=1.5e+02 Score=25.00 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=34.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
.-|.++|.+++|++.|..-.... +.+..++..-..+|.+...+..|+.=-...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~------------------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY------------------PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC------------------CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 46789999999999998766531 224455555566677666666555444333
No 421
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.13 E-value=2.4e+02 Score=23.98 Aligned_cols=32 Identities=9% Similarity=0.258 Sum_probs=16.1
Q ss_pred CCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
.+...+..+...++.. ..|+...+...++.+.
T Consensus 183 ~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 183 EGIKFEDDALHIIAQK--ADGALRDALSIFDRVV 214 (367)
T ss_pred cCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3444444444444432 2356666666666553
No 422
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.79 E-value=41 Score=16.97 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=11.2
Q ss_pred cchHHHHHHHHHhcCCCCchhhHH
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFN 27 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~ 27 (325)
++.|..+|+....- .|++.+|-
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45555555555543 35544443
No 423
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.21 E-value=3.1e+02 Score=24.87 Aligned_cols=90 Identities=8% Similarity=0.169 Sum_probs=56.8
Q ss_pred hcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCH
Q 048780 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184 (325)
Q Consensus 105 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (325)
..|+..+......++.. ..|++..|+.+++.....| ....+...+-..+. ..+....-.++.+... |+.
T Consensus 193 ~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~--~~~It~~~V~~~lg------~~~~~~i~~ll~al~~-~d~ 261 (509)
T PRK14958 193 EENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYG--NGKVLIADVKTMLG------TIEPLLLFDILEALAA-KAG 261 (509)
T ss_pred HcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHHC------CCCHHHHHHHHHHHHc-CCH
Confidence 44666665555555444 3589999999998876654 12233333322221 2344445556666554 899
Q ss_pred HHHHHHHHHHHHcCCCCChhh
Q 048780 185 EDAVSLCREMLSEGIRADATT 205 (325)
Q Consensus 185 ~~a~~~~~~m~~~g~~~~~~~ 205 (325)
+.++.++++|...|..|....
T Consensus 262 ~~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 262 DRLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred HHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999998875443
No 424
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.13 E-value=2e+02 Score=22.65 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=60.6
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc---CHHHH--HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc
Q 048780 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL---TIETC--NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290 (325)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 290 (325)
+.+...-.|.|+--|.-+..+.+|-+.|.. ..|+.| +..++ ..-|+.....|+++.|.+....+. -.-+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-PEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-hHHHccc
Confidence 344555566667777766667777776654 334444 33333 345777789999999999988765 2323334
Q ss_pred HHhHHHHHH----HHHccCChHHHHHHHHH
Q 048780 291 VVTYNIMIH----GFCKEGQHQKANGLLLD 316 (325)
Q Consensus 291 ~~~~~~li~----~~~~~g~~~~a~~~~~~ 316 (325)
...+-.|.. -..+.|..++|+++.+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333322 24677888888887764
No 425
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.75 E-value=1.5e+02 Score=21.21 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=34.2
Q ss_pred CCChHhHHHHHHHHHHcCC---HHHHHHHHHHHhhCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 217 PPDSHVYTTYIDGLYKNGF---VLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.++..+--.+..++.+..+ ..+.+.+|+.+.+.. ..-.....--|.-++.+.++++.+.++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555555555443 445556666665422 11122222334445666677777777776665
No 426
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.68 E-value=1.7e+02 Score=21.73 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=40.2
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCCh
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (325)
+.++..|++++..=. .++..+...++.-.|.++++.+. +.+..++..|.-.-+..+...|-+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCE
Confidence 334566777665433 45555555566678899999887 666666776666666667666643
No 427
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.66 E-value=88 Score=21.90 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 129 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
++..++|..|...|+-.. -...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~--------------------~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTK--------------------LALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchh--------------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446789999999987653 34567777778888999999999986
No 428
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.32 E-value=1e+02 Score=20.73 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC--ChHHHHHHHHHHHHcCC
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG--QHQKANGLLLDMEETGL 322 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~ 322 (325)
..++..|...|+.++|..-+.++... .. .......++..+...+ .-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-cc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 45667788889999999988886411 11 1222334444444332 23455666666666554
No 429
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.13 E-value=1.2e+02 Score=19.72 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHH
Q 048780 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 238 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (325)
.+.++++.+.+.|+- +..-...+-.+--..|+.+.|.+++..+. . .|+ .|..++.++...|..+-|.+
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r---g~~--aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q---KEG--WFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c---CCc--HHHHHHHHHHHcCchhhhhc
Confidence 355677777777744 44444554444446788999999999876 2 333 47788888888877665543
No 430
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.35 E-value=47 Score=20.62 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 048780 34 CTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65 (325)
Q Consensus 34 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 65 (325)
.-.|+.+.+.+++++....|..|.....+.+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~ 43 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILM 43 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34577777777777777777665555444443
No 431
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=36.23 E-value=1.9e+02 Score=21.88 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=6.4
Q ss_pred CCcHHhHHHHHHHH
Q 048780 288 TPDVVTYNIMIHGF 301 (325)
Q Consensus 288 ~p~~~~~~~li~~~ 301 (325)
+|+-.+|+.-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 55555555555444
No 432
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=36.09 E-value=77 Score=17.79 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=11.0
Q ss_pred HccCChHHHHHHHHHHHHcCCCC
Q 048780 302 CKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
...|--.+++++.=++.+.|+.|
T Consensus 15 LntgLd~etL~ici~L~e~GVnP 37 (48)
T PF12554_consen 15 LNTGLDRETLSICIELCENGVNP 37 (48)
T ss_pred HcCCCCHHHHHHHHHHHHCCCCH
Confidence 33444444455555555555444
No 433
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=36.07 E-value=2.6e+02 Score=23.33 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=37.8
Q ss_pred HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----C--CC----------cCHHHHHHHHHHHHhcCChHHHH
Q 048780 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----K--CV----------LTIETCNCLIDGLCKIGRLKIAW 275 (325)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~--~~----------~~~~~~~~ll~~~~~~g~~~~a~ 275 (325)
...+...+..+...|+.... ++...+.+-++.+.-. + +. .+...|. ++++.. .|+..+|.
T Consensus 144 ~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~~~~if~-l~dai~-~~~~~~A~ 219 (326)
T PRK07452 144 QELGVKLTPEAAELLAEAVG--NDSRRLYNELEKLALYAENSTKPISAEEVKALVSNTTQNSLQ-LADALL-QGNTGKAL 219 (326)
T ss_pred HHcCCCCCHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccCcCcHHH-HHHHHH-CCCHHHHH
Confidence 44566666666666665554 3555555555554321 1 10 1222333 555544 36677777
Q ss_pred HHHHHHhhCCCCCC
Q 048780 276 DIFHMLMQNPGLTP 289 (325)
Q Consensus 276 ~~~~~~~~~~~~~p 289 (325)
++++.+. ..|..|
T Consensus 220 ~~l~~L~-~~g~~p 232 (326)
T PRK07452 220 ALLDDLL-DANEPA 232 (326)
T ss_pred HHHHHHH-HCCCcH
Confidence 7777766 455433
No 434
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.17 E-value=1.1e+02 Score=26.51 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCC------CC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHK------CV-LTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.-.|++.++-.|++..|+++++.+.-.. +. -...+|--+--+|.-.+++.+|.+.|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777766553211 00 112234444455566666666666666543
No 435
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=34.75 E-value=47 Score=28.89 Aligned_cols=48 Identities=10% Similarity=-0.035 Sum_probs=34.3
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC 53 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 53 (325)
.+++-+++++.+.+.| .+|.. ..-++.|.|.+++++|.+..++-.+.|
T Consensus 26 ~~~e~~~~l~~l~~~g-~~dvl--~ltiDsytr~~~~~~a~~~l~~~~~~~ 73 (428)
T cd00245 26 LLEEHIELLRTLQEEG-AADVL--PLTIDSYTRVNDYEEAEEGLEESIKAG 73 (428)
T ss_pred CHHHHHHHHHHHHhcC-CCCee--ccccccchhhhhhHHHHHHHHhhhhcC
Confidence 4566777888888776 34443 334788889999999999888875443
No 436
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.56 E-value=2.5e+02 Score=22.86 Aligned_cols=127 Identities=11% Similarity=0.159 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCCCcC
Q 048780 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-----HKCVLT 254 (325)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~ 254 (325)
+...+++|+.-|.+..+..-.....-|..+ -.++....+.+++++.++.+++|.. -.-.-+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKAL--------------KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKAL--------------KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHH--------------HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhH----HHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY----NIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..+.|.++..-..+.+.+-...+++.-.....-..+...| .-|-..|...|++.+..++++++...
T Consensus 105 EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 105 EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
No 437
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=34.48 E-value=57 Score=28.37 Aligned_cols=50 Identities=26% Similarity=0.249 Sum_probs=35.8
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 048780 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204 (325)
Q Consensus 125 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 204 (325)
...+++|+++.++....|...+ .|-...|.+++.++.++|+.||..
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~S----------------------------------Igl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 216 AETLDEALALAEEATAAGEPIS----------------------------------IGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceE----------------------------------EEEeccHHHHHHHHHHcCCCCcee
Confidence 4778889988888888775442 244556777888888888888776
Q ss_pred hHHH
Q 048780 205 TYNT 208 (325)
Q Consensus 205 ~~~~ 208 (325)
|-.+
T Consensus 262 tDQT 265 (561)
T COG2987 262 TDQT 265 (561)
T ss_pred cccc
Confidence 6443
No 438
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=34.44 E-value=1.6e+02 Score=20.62 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 239 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.-.+++.+.+.++.-....+.-+-.-|.+..+..+|..+|+.++
T Consensus 82 vcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 82 VCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 33445666666666555566666666667777788888777654
No 439
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=34.26 E-value=1.2e+02 Score=26.36 Aligned_cols=157 Identities=12% Similarity=0.053 Sum_probs=70.9
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHH---HHHHHHHHHHHHHhc
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---ALVALNLFEEMVNEF 79 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---~~~a~~~~~~~~~~~ 79 (325)
.+++-+++++.+...| .+|.-+ .-|+.|.|.+++++|...+++-.+.|. ....=|-.+ ...+.++.+....--
T Consensus 30 ~~~~~i~lL~~l~~~g-~~d~lp--~TiDSyTR~n~y~~A~~~l~~s~~~~~-s~LNGfP~VnhG~~~~R~v~~~v~~Pv 105 (441)
T PF06368_consen 30 LPEEMIELLQYLRDEG-GADVLP--LTIDSYTRQNDYEEAERGLEESIETGR-SMLNGFPLVNHGVETCRKVLEAVDFPV 105 (441)
T ss_dssp SHHHHHHHHHHHHHTT---SSEE--EEB-HHHHTT-HHHHHHHHHHHHHHTS---SSSB-HHHHHHHHHHHHHHH-SS-E
T ss_pred CHHHHHHHHHHHHhcc-CCCeec--eeeecccccccHHHHHHHHHhchhcCc-ccccCCccccccHHHHHHHHHhCCCCe
Confidence 4566777888887765 344333 237788999999999999988887552 222222222 255555555551000
Q ss_pred C-CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHcc-------CcHHHHHHHHHHHHHCCCCCCcccHH
Q 048780 80 G-VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD-------GKMEEANCLLEVMIQRDVNPNTCTYN 151 (325)
Q Consensus 80 ~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------g~~~~a~~~~~~m~~~g~~~~~~~~~ 151 (325)
. ..-.||.... .......|--. .+-...+|+. -|++. .+|..+-+++-...+.|+.++..+|.
T Consensus 106 QvRHGtpdarlL---~e~~~a~G~ta---~EGG~ISYnl---PY~k~vpLe~si~~Wqy~drl~g~y~e~Gv~inrE~FG 176 (441)
T PF06368_consen 106 QVRHGTPDARLL---AEIALASGFTA---FEGGPISYNL---PYSKNVPLEKSIRDWQYVDRLCGYYEENGVEINREPFG 176 (441)
T ss_dssp EEE---SS-HHH---HHHHHHTT--E---EE--TTTTTT---TT-SS--HHHHHHHHHHHHHHHHHHHHTT---EEE--T
T ss_pred eccCCCCcHHHH---HHHHHHcCCCc---cCCCceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCC
Confidence 0 0012333322 22222222200 0111222221 13332 34556666666777889999999887
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHH
Q 048780 152 TLMDGFAWWSKGCRHDVYSYNILINGY 178 (325)
Q Consensus 152 ~ll~~~~~~~~~~~~~~~~~~~li~~~ 178 (325)
.|.. .-++|+...--++|.++
T Consensus 177 pLtg------tLvPPsisiav~ilE~L 197 (441)
T PF06368_consen 177 PLTG------TLVPPSISIAVSILEAL 197 (441)
T ss_dssp TTTS------SS--HHHHHHHHHHHHH
T ss_pred CCCc------CccCcHHHHHHHHHHHH
Confidence 7533 23455555555555553
No 440
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.11 E-value=2.2e+02 Score=21.91 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCC--------------CCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048780 225 TYIDGLYKNGFVLEAMKVFSAIGNHK--------------CVLTIETCNCLIDGLCKIGRLKIAWDIFH 279 (325)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~m~~~~--------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (325)
+++-.|-+.-++.++.++++.|.+.. ..+--...|.....|.++|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 45566666667777777776665421 22334455666667777777777777665
No 441
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.74 E-value=1.7e+02 Score=22.80 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC---------CHHHHHHHHHHHHHc
Q 048780 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR---------NVEDAVSLCREMLSE 197 (325)
Q Consensus 127 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~ 197 (325)
..+.|..++.+|--..++.= .-+-.....-|.++..+|++.| +.+.-.++++..++.
T Consensus 136 ~vetAiaml~dmG~~SiKff--------------PM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~lda 201 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFF--------------PMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDA 201 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEe--------------ecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHc
Confidence 35677777777755433210 0111123445666777777765 345556666666666
Q ss_pred CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 198 g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
|++. .=+++|+++|+--.-.-+.++..+++..++
T Consensus 202 Gv~k----------------viPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 202 GVEK----------------VIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred CCCe----------------eccccceeccccccCCCCHHHHHHHHHHhh
Confidence 6431 123456666665555566777777776654
No 442
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=33.74 E-value=4.3e+02 Score=25.28 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=21.6
Q ss_pred HccCcHHHHHHHHHHHHHCCCCCCccc
Q 048780 123 SKDGKMEEANCLLEVMIQRDVNPNTCT 149 (325)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~g~~~~~~~ 149 (325)
++.++++.|+.++..|.+.|..|.-..
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~ 295 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIF 295 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 345889999999999999998775433
No 443
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.54 E-value=1.7e+02 Score=26.92 Aligned_cols=63 Identities=8% Similarity=-0.025 Sum_probs=30.2
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 124 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
..+-|+-|..++......| ...+..+. ..-.-.+...-.-++..|.+.|-.+.|.++.+.+-.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--------~~~i~~lL--~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--------RERIEELL--PRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---------HHHHHHHG--GG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--------HHHHHHHH--hhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455777777776433333 11111111 111122344456667777777777777777766644
No 444
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=33.44 E-value=4e+02 Score=24.84 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCchhhc-----CC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 048780 91 TNIIDGLCKDGFMMDQ-----GM-RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159 (325)
Q Consensus 91 ~~ll~~~~~~~~~~~~-----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 159 (325)
-..+++|.+....... +. .++....=.+|-.|.|.|++++|.++..+.. .........+...+..+..
T Consensus 84 ~~~V~afv~~~~~~~~~~~~~~l~~~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 84 YNKVRAFVNVRLKRPGAWTDSGLEIVNGDPIWALIYYCLRCGDYDEALEVANENR-NQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHHHCTTBESSCBSSTT--EETTEEHHHHHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcccCCCcccccccCCCCccHHHHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHh
Confidence 3466677665542111 11 2344445578889999999999999995543 3455666777777777765
No 445
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.18 E-value=2.8e+02 Score=22.97 Aligned_cols=165 Identities=9% Similarity=0.030 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC
Q 048780 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE--------GIR 200 (325)
Q Consensus 129 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~ 200 (325)
.+|+++|.-+.++.-+ .++-+-++..+....+..+|...++...-+ +..
T Consensus 150 ~KA~ELFayLv~hkgk-----------------------~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~n 206 (361)
T COG3947 150 RKALELFAYLVEHKGK-----------------------EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNAN 206 (361)
T ss_pred hHHHHHHHHHHHhcCC-----------------------cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccC
Confidence 6899999888876322 223445667777777777777666543210 000
Q ss_pred CChhhHHHHHH-HhCCCCCChHhHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCC-------cC---------HHHHHHHH
Q 048780 201 ADATTYNTLFM-AINNVPPDSHVYTTYIDGLYK-NGFVLEAMKVFSAIGNHKCV-------LT---------IETCNCLI 262 (325)
Q Consensus 201 ~~~~~~~~ll~-~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~-------~~---------~~~~~~ll 262 (325)
........--. ...+.+-|..-|.+.+...-. +-.++++.++....+..=++ -| ..+++..-
T Consensus 207 e~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva 286 (361)
T COG3947 207 EAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVA 286 (361)
T ss_pred ceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHH
Confidence 00000000000 112234455556666555443 23466666666655321110 11 12345567
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
+.|..+|.+.+|.++.+...+-. +.+...|-.|++.++..||--.|.+-++.+.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 78999999999999998876332 4467788889999999999666666665553
No 446
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.05 E-value=3.2e+02 Score=23.60 Aligned_cols=45 Identities=22% Similarity=0.031 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCchhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 048780 9 VLLGRILMSCFTPNMVT--FNSLIKGLCTEGRILEAARLFKKLNVFCCDPN 57 (325)
Q Consensus 9 ~l~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 57 (325)
++++.+.+.|..|+... ..+.++..++.|+.+- .+.+.+.|..|+
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~ 62 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPD 62 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCcc
Confidence 45666667777666533 3455666677787753 444455565554
No 447
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.92 E-value=3.6e+02 Score=24.14 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=58.5
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChH
Q 048780 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308 (325)
Q Consensus 229 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (325)
.+...|+++.+.+.+...... +.....+..++++..-+.|+++.|..+-..|. ...++ ++.......-..-..|-++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l-~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMML-SNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh-ccccC-ChhheeeecccHHHHhHHH
Confidence 355678999999888766443 23456678889999999999999999988887 43333 2222222222334456777
Q ss_pred HHHHHHHHHHH
Q 048780 309 KANGLLLDMEE 319 (325)
Q Consensus 309 ~a~~~~~~m~~ 319 (325)
++.-.|+++..
T Consensus 409 ~~~~~wk~~~~ 419 (831)
T PRK15180 409 KSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHhc
Confidence 77777777643
No 448
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.77 E-value=2.9e+02 Score=23.02 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHcCCHH-HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 048780 221 HVYTTYIDGLYKNGFVL-EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 275 (325)
.+|+.+|++---+.+-+ -|.++++.+ .+|..|+.+++..|+.+-.+
T Consensus 295 ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 295 IVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 35777777665553322 234444443 36888888888888876543
No 449
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.50 E-value=3.6e+02 Score=23.93 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 25 TFNSLIKGLCTEGRILEAARLFKKLN 50 (325)
Q Consensus 25 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 50 (325)
....+|+-|..+|+..+..+.++.+-
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHcC
Confidence 34678999999999999888888654
No 450
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.20 E-value=3.2e+02 Score=23.32 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHH
Q 048780 233 NGFVLEAMKVFSAI 246 (325)
Q Consensus 233 ~~~~~~a~~~~~~m 246 (325)
.|+...|...++..
T Consensus 211 ~G~~R~al~~l~~~ 224 (363)
T PRK14961 211 HGSMRDALNLLEHA 224 (363)
T ss_pred CCCHHHHHHHHHHH
Confidence 35555555555544
No 451
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.15 E-value=2.6e+02 Score=22.19 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=38.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHhc
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCT-EGRILEAARLFKKLNVF 52 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~ 52 (325)
.|++++++..+..+...+...+..--|.|-.+|-. -|....+++++..+.+.
T Consensus 14 ~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 14 AERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp TTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 47889999999999998888888888888877743 36667778887777653
No 452
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=32.03 E-value=1.4e+02 Score=18.96 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK 48 (325)
Q Consensus 5 ~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 48 (325)
..+.++|..|.+.| ..+..-...|...+...|+.+-+..+.+-
T Consensus 37 ~~~~dlf~~Le~~~-~i~~~nl~~L~~lL~~i~R~DL~~~i~~~ 79 (84)
T PF01335_consen 37 KSGLDLFEELEKRG-LISPDNLSLLKELLKRIGRPDLLKKIEEY 79 (84)
T ss_dssp SSHHHHHHHHHHTT-SSSTTBHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred chHHHHHHHHHHcC-CCCCccHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45778888888776 45556667777777777877777766543
No 453
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=31.90 E-value=36 Score=19.72 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 048780 39 ILEAARLFKKLNVFCCDPNVITFNTLAL 66 (325)
Q Consensus 39 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 66 (325)
.++..++|++|..+...|....|+-.++
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~L~ 35 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFSLE 35 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeeeHH
Confidence 3455566666666665666655555543
No 454
>PHA02798 ankyrin-like protein; Provisional
Probab=31.88 E-value=3.8e+02 Score=24.00 Aligned_cols=17 Identities=6% Similarity=0.362 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCCCC
Q 048780 186 DAVSLCREMLSEGIRAD 202 (325)
Q Consensus 186 ~a~~~~~~m~~~g~~~~ 202 (325)
...++.+.+.+.|..++
T Consensus 87 ~~~~iv~~Ll~~GadiN 103 (489)
T PHA02798 87 HMLDIVKILIENGADIN 103 (489)
T ss_pred hHHHHHHHHHHCCCCCC
Confidence 34677788888886654
No 455
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=31.64 E-value=1.2e+02 Score=21.74 Aligned_cols=31 Identities=3% Similarity=0.152 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 048780 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 263 (325)
.|-+.+...++++|.+.|+..+...|+..++
T Consensus 122 kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 122 KGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred cCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3455555555555555555555555554443
No 456
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.44 E-value=3e+02 Score=24.96 Aligned_cols=93 Identities=6% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHH--hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc
Q 048780 226 YIDGLYKNGFVLEAMKVFSAI--GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m--~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (325)
++.-|.+.+++++|..++..| ...|-. --...+.+++...+..--++.+..++.+. ..=..|....-......|..
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~-C~~~L~~I~n~Ll~~pl~~ere~~le~al-gsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQ-CFHCLSAIVNHLLRQPLTPEREAQLEAAL-GSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHH-hhccCCCcCccHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHHcC
Q 048780 304 EGQHQKANGLLLDMEETG 321 (325)
Q Consensus 304 ~g~~~~a~~~~~~m~~~g 321 (325)
-=.+-|.++|..|...+
T Consensus 492 -~V~~~aRRfFhhLLR~~ 508 (545)
T PF11768_consen 492 -PVSDLARRFFHHLLRYQ 508 (545)
T ss_pred -HHHHHHHHHHHHHHHhh
No 457
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=31.42 E-value=1.3e+02 Score=19.50 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=23.4
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHH
Q 048780 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
-|-+.|-.+.+.+++.......|-. .|...|+.++-.++.-.-|..+
T Consensus 41 ~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 41 EYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred hcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHH
Confidence 3444455555555555554333322 4455555555555554444444
No 458
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=31.36 E-value=2.5e+02 Score=23.26 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=48.7
Q ss_pred CChHhHHHHH---HHHHHcCCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHh
Q 048780 218 PDSHVYTTYI---DGLYKNGFVLEAMKVFSAIGNH-KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293 (325)
Q Consensus 218 ~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 293 (325)
+.......|| .+|......|....+++..+.. ..-....-|..+++...--|++.+..-+|+.+.+. .-
T Consensus 18 ~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~L~~n-------~q 90 (296)
T PF14649_consen 18 QLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDILIEN-------DQ 90 (296)
T ss_pred CccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHHHHHc-------Ch
Confidence 3445566667 4555666777777777655432 12234556788888888888888888888887732 12
Q ss_pred HHHHHHHH
Q 048780 294 YNIMIHGF 301 (325)
Q Consensus 294 ~~~li~~~ 301 (325)
|..|++-.
T Consensus 91 fE~LL~k~ 98 (296)
T PF14649_consen 91 FELLLRKG 98 (296)
T ss_pred HHHHHhcc
Confidence 66666543
No 459
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=31.28 E-value=3.7e+02 Score=23.72 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=56.1
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH-----------------HHHHHHHHHHHHhc
Q 048780 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----------------LVALNLFEEMVNEF 79 (325)
Q Consensus 17 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-----------------~~a~~~~~~~~~~~ 79 (325)
..+.||..+.|-+-..++..-..+-...+++-..+.+- |=..-+-.++ ++++++++.|...-
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 45789999999999999998888888899988887652 2222232222 77888888887665
Q ss_pred CCccCccHHHHHHHHHHHHh
Q 048780 80 GVICKPDVVTCTNIIDGLCK 99 (325)
Q Consensus 80 ~~~~~~~~~~~~~ll~~~~~ 99 (325)
-.-|+.-+-+|..-|+.
T Consensus 256 ---~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 ---SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ---ccccchhHHHHHHHHhh
Confidence 34456666666666654
No 460
>PRK14135 recX recombination regulator RecX; Provisional
Probab=31.12 E-value=2.8e+02 Score=22.29 Aligned_cols=12 Identities=0% Similarity=-0.177 Sum_probs=5.2
Q ss_pred HHHHHHhhCCCC
Q 048780 241 KVFSAIGNHKCV 252 (325)
Q Consensus 241 ~~~~~m~~~~~~ 252 (325)
++-..+...|+.
T Consensus 127 ~I~~kL~~kGi~ 138 (263)
T PRK14135 127 VIKQKLLQKGIE 138 (263)
T ss_pred HHHHHHHHcCCC
Confidence 334444444443
No 461
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.02 E-value=1.5e+02 Score=19.17 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=22.3
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
++|+-....|+..|+..|..++....-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445555555555555555555555544445555555555554
No 462
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=31.02 E-value=5e+02 Score=25.15 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=9.6
Q ss_pred CChHHHHHHHHHHHHcCC
Q 048780 305 GQHQKANGLLLDMEETGL 322 (325)
Q Consensus 305 g~~~~a~~~~~~m~~~g~ 322 (325)
|+..+++.+++++...|+
T Consensus 259 ~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 259 GDGPEILAVADEMALRSL 276 (830)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 455555555555555444
No 463
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=30.77 E-value=4.4e+02 Score=24.49 Aligned_cols=209 Identities=11% Similarity=0.130 Sum_probs=118.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHH-ccCcHHHHHH
Q 048780 55 DPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS-KDGKMEEANC 133 (325)
Q Consensus 55 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~ 133 (325)
+.+...|..++..|++.++.+.+... ++|.. ...++-.+...+. ...+++.|..
T Consensus 27 ~~~l~~Y~kLI~~ai~CL~~~~~~~~--l~p~~-----------------------ea~~~l~la~iL~~eT~n~~~Ae~ 81 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKCLEAVLKQFK--LSPRQ-----------------------EARVRLRLASILLEETENLDLAET 81 (608)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCC--CCHHH-----------------------HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44667788888888888888876431 22222 3345555666666 5688999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 048780 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213 (325)
Q Consensus 134 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (325)
.+++....--+++ +..+ --.+-..++..+.+.+... |...+++..+.--......|
T Consensus 82 ~L~k~~~l~~~~~---~~d~-------------k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w------- 137 (608)
T PF10345_consen 82 YLEKAILLCERHR---LTDL-------------KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW------- 137 (608)
T ss_pred HHHHHHHhccccc---hHHH-------------HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH-------
Confidence 9997654422221 1100 0112234566677766666 88888887654211111111
Q ss_pred CCCCCChHhHHHH-HHHHHHcCCHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHHH--hcCChHHHHHHHHHHhh---C
Q 048780 214 NNVPPDSHVYTTY-IDGLYKNGFVLEAMKVFSAIGNHK---CVLTIETCNCLIDGLC--KIGRLKIAWDIFHMLMQ---N 284 (325)
Q Consensus 214 ~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~---~ 284 (325)
...+.-+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++.+.. .
T Consensus 138 ------~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 138 ------YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred ------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 1122222 223333479999999998775432 2344555555666554 34545666666665521 1
Q ss_pred C-----CCCCcHHhHHHHHHHH--HccCChHHHHHHHHHHH
Q 048780 285 P-----GLTPDVVTYNIMIHGF--CKEGQHQKANGLLLDME 318 (325)
Q Consensus 285 ~-----~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~ 318 (325)
. .-.|-..+|..+++.+ ...|+++.+...++++.
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1245677788887754 56788777777766664
No 464
>PF15469 Sec5: Exocyst complex component Sec5
Probab=30.51 E-value=2.3e+02 Score=21.18 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHHHHHHH
Q 048780 29 LIKGLCTEGRILEAARLFKKLNVFCCDP--NVITFNTLALVALNLFEEM 75 (325)
Q Consensus 29 ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l~~~a~~~~~~~ 75 (325)
-|.-+.+.|+++.+..-|.+....--.. ....+..+..++..+.+++
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~ 140 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEF 140 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777776665431111 4444444444444444333
No 465
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.44 E-value=1.6e+02 Score=19.14 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=16.3
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
|....-.+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4445555555666666666666655555443
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.37 E-value=2.7e+02 Score=21.92 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=55.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
...-+|.||--|.-...+.+|-+.|.. +.|+.|...... ...-..-|......|++++|.+....+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~------------~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLD------------SMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchh------------hHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 444566666666666666666666643 345554211111 111123366778899999999998887
Q ss_pred hhCCCCcCHHHHHHHH----HHHHhcCChHHHHHHHHH
Q 048780 247 GNHKCVLTIETCNCLI----DGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll----~~~~~~g~~~~a~~~~~~ 280 (325)
...-+..|...+-.|. --..+.|..++|.++.+.
T Consensus 91 ~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 91 NPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred ChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5443344433332221 123466777777776654
No 467
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=30.12 E-value=3.6e+02 Score=23.21 Aligned_cols=135 Identities=11% Similarity=-0.071 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh--
Q 048780 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-- 248 (325)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-- 248 (325)
.-++-.++...+.++++++.|+...+.-...+ .-.....++..|-..|.+..++++|.-......+
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~------------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNND------------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC------------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 33466777778889999999987765321111 0112345688888889999999988766544422
Q ss_pred --CCCCcCHHHH-----HHHHHHHHhcCChHHHHHHHHHHhhC---CCCCC-cHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 249 --HKCVLTIETC-----NCLIDGLCKIGRLKIAWDIFHMLMQN---PGLTP-DVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 249 --~~~~~~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
-++.--..-| -.|.-++...|.+..|.+..++..+- .|-.| -......+.+.|...|+.|.|..=|++.
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2322111122 33445677888888888877766521 22111 2233455667788889988887766653
No 468
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.01 E-value=3.2e+02 Score=22.56 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRN---VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (325)
....-..++...| |+ .+.|.+.|+.....+..+ . ...+......++....+.|+.+.-..++
T Consensus 128 ~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~------------~-~~i~~dlr~~v~~~~~~~g~~~~~~~l~ 192 (324)
T PF11838_consen 128 DRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSP------------E-SSIPPDLRWAVYCAGVRNGDEEEWDFLW 192 (324)
T ss_dssp HHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-T------------T-STS-HHHHHHHHHHHTTS--HHHHHHHH
T ss_pred HHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCccc------------c-cccchHHHHHHHHHHHHHhhHhhHHHHH
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCCh--HHHHHHHHH
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH--QKANGLLLD 316 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~ 316 (325)
+...... +...-..++.+.+...+.+...++++.......+++.... .++.++...+.. +.+.+++.+
T Consensus 193 ~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 193 ELYKNST---SPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIR--YVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHTTS---THHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHH--HHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHhccC---CHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHH--HHHHHHhcCChhhHHHHHHHHHH
No 469
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=29.91 E-value=2e+02 Score=21.35 Aligned_cols=97 Identities=7% Similarity=0.042 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcC---CCCChh
Q 048780 37 GRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG---MRPDVV 113 (325)
Q Consensus 37 g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~---~~~~~~ 113 (325)
.+.+++.+++++..+. .-+...|. +.-.++++.+....+ -+.=.-++|.+=..|.+.|...-.. -+....
T Consensus 48 ~np~~~~~~l~~~~~l--~d~aeafa---~fDy~l~~~la~~S~--NpiY~LilNgfk~lY~rvg~~YFs~~~aR~la~~ 120 (164)
T PF07840_consen 48 NNPEKVLEILAELDKL--EDDAEAFA---EFDYQLFRRLAFASG--NPIYGLILNGFKGLYSRVGRYYFSNPEARELALN 120 (164)
T ss_dssp H-HHHHHHHHHCCTTS---SSHHHHH---HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HCHHHHHHHHHHhhhc--ccCHHHHH---HHhHHHHHHHHHhcC--CCchhhHHcccHHHHHHHHHHHcCChHHHHHHHH
Confidence 5667777777666543 22333332 233455555554331 1122344555556666666521111 111223
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
-|..|+ ..+..|+.+++..+.+.+...
T Consensus 121 fY~~L~-~~~~~~~~~~v~~~vr~yg~~ 147 (164)
T PF07840_consen 121 FYRELL-EACEKGDYDQVPDVVRQYGIE 147 (164)
T ss_dssp HHHHHH-HHHHCT-CCGHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhCCHHHHHHHHHHHHHH
Confidence 344443 444556777777766665443
No 470
>smart00031 DED Death effector domain.
Probab=29.79 E-value=1.5e+02 Score=18.65 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhcC
Q 048780 39 ILEAARLFKKLNVFC 53 (325)
Q Consensus 39 ~~~a~~~~~~m~~~g 53 (325)
...+.++|..|.+.|
T Consensus 37 ~~~~ldlf~~Le~~~ 51 (79)
T smart00031 37 IKTFLDLFSALEEQG 51 (79)
T ss_pred cCCHHHHHHHHHHcC
Confidence 355566666666554
No 471
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=29.66 E-value=3.4e+02 Score=22.85 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=62.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhh-cCCCC---CchhhHHHHHHHHHhcCCHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDGFAWW-SKGCR---HDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~-~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
+++++.+...... +++.+.++....+. --.|+..|-...++.+++. ..-.. .-..+|.+++..+.+.+-++...
T Consensus 66 vlnsi~sLi~~~~-~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~ 144 (378)
T KOG2753|consen 66 VLNSIVSLIKNAP-PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIV 144 (378)
T ss_pred HHHHHHHHHHhCC-HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeec
Confidence 3444444444333 77777777665543 2234544444444444441 12222 33567888999988887765544
Q ss_pred HHHHHHHHc--CCCCChhhHHHHHH-------HhCCCCCChHhHHHHHHHHHHcC
Q 048780 189 SLCREMLSE--GIRADATTYNTLFM-------AINNVPPDSHVYTTYIDGLYKNG 234 (325)
Q Consensus 189 ~~~~~m~~~--g~~~~~~~~~~ll~-------~~~~~~~~~~~~~~l~~~~~~~~ 234 (325)
-=++.+... ...++..--+.++. .......+....+.++.+|...+
T Consensus 145 ~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dn 199 (378)
T KOG2753|consen 145 PNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDN 199 (378)
T ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccc
Confidence 433333321 23344444444433 22224455666777777776543
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=29.13 E-value=5.1e+02 Score=24.67 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=56.1
Q ss_pred hhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCC
Q 048780 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183 (325)
Q Consensus 104 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 183 (325)
...|+..+......++... .|++..++.+++.+...|- ...+...+-..+. ..+......++.++.. ++
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V~~lLG------~~d~~~If~LldAL~~-~d 260 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDVRQMIG------AVDKQYLYELLTGIIN-QD 260 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHc------ccCHHHHHHHHHHHHc-CC
Confidence 3456666666666665444 5899999999988776441 1223332222221 1233445556666655 89
Q ss_pred HHHHHHHHHHHHHcCCCCCh
Q 048780 184 VEDAVSLCREMLSEGIRADA 203 (325)
Q Consensus 184 ~~~a~~~~~~m~~~g~~~~~ 203 (325)
...++.++++|...|+.+..
T Consensus 261 ~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 261 GAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999876543
No 473
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.05 E-value=1.1e+02 Score=21.87 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=24.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 048780 30 IKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65 (325)
Q Consensus 30 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 65 (325)
+..+.+.|-+.++..++++|.+.|+..+..+|+..+
T Consensus 116 L~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL 151 (157)
T COG2405 116 LALAKSKGLISKDKPILDELIEKGFRISRSILEEIL 151 (157)
T ss_pred HHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHH
Confidence 344455667777777777777777777666666554
No 474
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=28.97 E-value=3.4e+02 Score=22.59 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=34.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHH--HHHHHccCChHHHHHHHHHHHH
Q 048780 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM--IHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~ 319 (325)
...+...+.++.|...++... ...-.|-...+..| .+.|...|..+.|..+++++.+
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~-~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRL-AQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhc-ccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777888888877633 11123333444333 3457777888888777777654
No 475
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=28.66 E-value=3.9e+02 Score=23.21 Aligned_cols=65 Identities=8% Similarity=0.070 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh---------------CCCCCCcHHhHHHHHHHHHccC
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ---------------NPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------~~~~~p~~~~~~~li~~~~~~g 305 (325)
..++.+.+.|.-.|...+...++.+...-.+++|.+--..... ..--.||...|.++...|+--+
T Consensus 172 ~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~ 251 (391)
T cd07229 172 RRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSA 251 (391)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCcc
Confidence 3334444455555666666666555544445554422111100 1223688899999888776544
No 476
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=28.58 E-value=66 Score=20.39 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 048780 308 QKANGLLLDMEETGLEPN 325 (325)
Q Consensus 308 ~~a~~~~~~m~~~g~~pd 325 (325)
+...+..++++..|++||
T Consensus 12 ~~ie~~inELk~dG~ePD 29 (85)
T PF08967_consen 12 ELIEEKINELKEDGFEPD 29 (85)
T ss_dssp HHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 345667778888888887
No 477
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.43 E-value=4.7e+02 Score=24.02 Aligned_cols=47 Identities=9% Similarity=-0.112 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHH---HHhcCCHHHHHHHHHHHHh
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKG---LCTEGRILEAARLFKKLNV 51 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~ 51 (325)
...|.+.++.....|. ......-.++.. +...++++.|...|+...+
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4567778887777652 222222222222 3456788888888888866
No 478
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=28.39 E-value=1.6e+02 Score=18.46 Aligned_cols=15 Identities=27% Similarity=0.113 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhcC
Q 048780 39 ILEAARLFKKLNVFC 53 (325)
Q Consensus 39 ~~~a~~~~~~m~~~g 53 (325)
...+.++|..+.+.|
T Consensus 36 ~~s~l~lf~~Le~~~ 50 (77)
T cd00045 36 IKTPFDLFLVLERQG 50 (77)
T ss_pred cCCHHHHHHHHHHcC
Confidence 444556666666555
No 479
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=28.33 E-value=4.5e+02 Score=23.74 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC--KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
-+.+++-+...|-..+|..++..+.... +|+...|..+|..=. .+-+...+..+++.+....| .|+..|--.+.-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 3566777788888999999999987764 567778877776322 22348889999999988888 577778777776
Q ss_pred HHccCChHHHHHHHHHHHH
Q 048780 301 FCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~ 319 (325)
=...|..+.+-.++.+..+
T Consensus 540 e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hccCCCcccccHHHHHHHH
Confidence 6788999988888766543
No 480
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=28.29 E-value=1.9e+02 Score=19.51 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHc-CCCC
Q 048780 185 EDAVSLCREMLSE-GIRA 201 (325)
Q Consensus 185 ~~a~~~~~~m~~~-g~~~ 201 (325)
++|.+.+.+++.. |+.|
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~ 22 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTP 22 (105)
T ss_pred HHHHHHHHHHhcccCCCc
Confidence 4566677777654 6666
No 481
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.22 E-value=3.8e+02 Score=22.93 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=73.1
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHH----HHHHHHHhhcCCCCCchhhHHHH---HHHHHhcC
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN----TLMDGFAWWSKGCRHDVYSYNIL---INGYCKDR 182 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~----~ll~~~~~~~~~~~~~~~~~~~l---i~~~~~~g 182 (325)
-.+.++-.+-..+...|+.+.|.+++++..-.--..-...|+ .+-.+-++......-|...|-++ |....+.|
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG 117 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRG 117 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcC
Confidence 355666777788889999988888887764321000000010 00111122233334466666665 56788999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHH-HcCCHHHHHHHHHHHhh
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY-KNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~ 248 (325)
.+..|+++.+-+..-...- |+...-.+|+.|+ +.++++--+++.+....
T Consensus 118 ~~rTAlE~~KlLlsLdp~~-----------------DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 118 CWRTALEWCKLLLSLDPDE-----------------DPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred cHHHHHHHHHHHHhcCCCC-----------------CcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999998864222 3333334477765 56677777777776544
No 482
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.18 E-value=3.1e+02 Score=21.85 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh----hCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 224 TTYIDGLYKNGFVLEAMKVFSAIG----NHKC-VLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~m~----~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
-.+...|.+.|++++|.++|+.+. +.|. .+...+...+..++.+.|+.+....+.-++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 355777889999999999998873 2342 2445566777888888898888777655443
No 483
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.91 E-value=2.9e+02 Score=21.49 Aligned_cols=90 Identities=16% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH----HHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID----GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
+.++|++++|..-|.+....-.......-.++.. ++.+.+.++.|..-..+..+-. +........=..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhh
Q ss_pred ChHHHHHHHHHHHHcC
Q 048780 306 QHQKANGLLLDMEETG 321 (325)
Q Consensus 306 ~~~~a~~~~~~m~~~g 321 (325)
.+++|++=|..+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
No 484
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=27.76 E-value=4.8e+02 Score=24.71 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=46.9
Q ss_pred cCCCCCchhhHHHHHHHHHhcCC----HHHHHHHHHHHHHc----CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRN----VEDAVSLCREMLSE----GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~ 232 (325)
..|.+.|...|..|+.++....+ ++++.++++.++.. |+.+... +...-..+.+.|+.
T Consensus 210 adgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lH--------------n~cf~WVlF~qyv~ 275 (677)
T PF05664_consen 210 ADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLH--------------NVCFAWVLFRQYVA 275 (677)
T ss_pred ccCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHH--------------HHHHHHHHHHHHHh
Confidence 45778899999999999887544 57777888777653 3322111 12223467888888
Q ss_pred cCCHHH---HHHHHHHHhh
Q 048780 233 NGFVLE---AMKVFSAIGN 248 (325)
Q Consensus 233 ~~~~~~---a~~~~~~m~~ 248 (325)
.|+.+- |...+.+...
T Consensus 276 tge~~LL~~a~~~L~ev~~ 294 (677)
T PF05664_consen 276 TGEPDLLKAAIQQLQEVAK 294 (677)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 886554 4444554433
No 485
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=27.62 E-value=1.8e+02 Score=23.31 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 272 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
++..+.|+...+.+|++++.. ..|.+|...++..+-+++++.++.
T Consensus 215 e~Lqd~fh~fLEeRGI~esl~---~FL~~ym~~Kd~rEYl~WlksvK~ 259 (263)
T KOG2536|consen 215 EELQDSFHRFLEERGIKESLA---SFLHAYMKNKDSREYLRWLKSVKS 259 (263)
T ss_pred HHHHHHHHHHHHHcCCCHHHH---HHHHHHHhhhhHHHHHHHHHHHHH
Confidence 346667777776788876643 567788888888887777777654
No 486
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=27.61 E-value=6.2e+02 Score=25.13 Aligned_cols=83 Identities=6% Similarity=-0.026 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHH
Q 048780 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 236 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
.+.-.+.|.++.+.=-.-|..++..-...+...|++..+.+++.++.++.|-.++...|.-++..+...|.- ....+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 334444454444432223555666666666667777777777777776666677777776666666665543 4444444
Q ss_pred HHHH
Q 048780 316 DMEE 319 (325)
Q Consensus 316 ~m~~ 319 (325)
.+..
T Consensus 1291 ~~~~ 1294 (1304)
T KOG1114|consen 1291 NWMR 1294 (1304)
T ss_pred hhee
Confidence 4443
No 487
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=27.49 E-value=5.1e+02 Score=24.14 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=6.9
Q ss_pred CChHHHHHHHHHHh
Q 048780 269 GRLKIAWDIFHMLM 282 (325)
Q Consensus 269 g~~~~a~~~~~~~~ 282 (325)
|+.++|..+++.+.
T Consensus 272 gd~~~Al~~l~~l~ 285 (598)
T PRK09111 272 GDVAAALAEFRAQY 285 (598)
T ss_pred CCHHHHHHHHHHHH
Confidence 44555555554444
No 488
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=27.46 E-value=98 Score=27.41 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=34.0
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 048780 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204 (325)
Q Consensus 125 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 204 (325)
..++++|+++.++.++.+-..+ .|-+-.|.++|.++.+.|+.||..
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~S----------------------------------Ig~~GNaadv~~~l~~r~i~pDlv 252 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPIS----------------------------------IGLLGNAAEVLPELLKRGVVPDVV 252 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceE----------------------------------EEeeccHHHHHHHHHHcCCCCCCc
Confidence 4678888888888887765442 244455677777777777777766
Q ss_pred hHHHH
Q 048780 205 TYNTL 209 (325)
Q Consensus 205 ~~~~l 209 (325)
|-.+-
T Consensus 253 tDQTS 257 (545)
T TIGR01228 253 TDQTS 257 (545)
T ss_pred CCCCc
Confidence 54443
No 489
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.39 E-value=4.8e+02 Score=23.75 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=57.2
Q ss_pred hcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCH
Q 048780 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184 (325)
Q Consensus 105 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (325)
+.++.-+...+..+ +....|...+++.+++.+...|- +..++..+..... .. +......++.+ ...++.
T Consensus 193 ~E~I~~e~~aL~~i--a~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG-----~~-~~~~~~~~~~~-i~~~d~ 261 (515)
T COG2812 193 KEGINIEEDALSLI--ARAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLG-----LT-DIEKLLSLLEA-ILKGDA 261 (515)
T ss_pred hcCCccCHHHHHHH--HHHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhC-----CC-CHHHHHHHHHH-HHccCH
Confidence 34555555544433 44567889999999999988764 4444444433321 11 22222223332 346899
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHH
Q 048780 185 EDAVSLCREMLSEGIRADATTYNT 208 (325)
Q Consensus 185 ~~a~~~~~~m~~~g~~~~~~~~~~ 208 (325)
.+++..++++.+.|..|.......
T Consensus 262 ~~~~~~~~~l~~~G~~~~~~l~dl 285 (515)
T COG2812 262 KEALRLINELIEEGKDPEAFLEDL 285 (515)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHH
Confidence 999999999999998776554433
No 490
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=27.28 E-value=3.8e+02 Score=22.55 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=21.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048780 296 IMIHGFCKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
.++++.. .|+...|..+++.+...|..|
T Consensus 217 ~l~dai~-~~~~~~a~~~l~~ll~~g~~p 244 (343)
T PRK06585 217 DAADAAL-AGDLAAFERALDRALAEGTAP 244 (343)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHcCCCH
Confidence 3455444 478889999999999988876
No 491
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.12 E-value=5.5e+02 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=14.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 048780 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLE 323 (325)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 323 (325)
...++.+..+ ++...+.++++++.+.|..
T Consensus 248 IfdLldAI~k-~d~~~al~~L~el~~~g~d 276 (702)
T PRK14960 248 IYDLILAVHQ-NQREKVSQLLLQFRYQALD 276 (702)
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHhCCC
Confidence 3344444433 4555556666665555543
No 492
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.94 E-value=95 Score=27.28 Aligned_cols=47 Identities=19% Similarity=0.034 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC 53 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 53 (325)
+++-+++++.+.+.| .+| .....|+.|.|.+++++|...+++-.+.|
T Consensus 70 ~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 70 LDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAG 116 (480)
T ss_pred HHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcC
Confidence 456677777777765 344 34445788889999999999888877643
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.91 E-value=1.8e+02 Score=19.65 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=19.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
+..+...+..-.|.++++.+. +.+...+..|.-..++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~-~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLR-KKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhCC
Confidence 333333444445555555555 3333444444444444444444
No 494
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=26.82 E-value=45 Score=23.28 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=14.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTF 26 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~ 26 (325)
.|+.++|.++++.+...|..|....|
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHH
Confidence 36666677777777766666655554
No 495
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=26.79 E-value=3e+02 Score=21.21 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 048780 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
--+++-.|-+.-++.+..++++.|.+..+..+.- .. +....+..+.-...|.....+.+.|.+|.|+.++++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L--KG-L~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL--KG-LTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--cC-ccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3456778888899999999999998754322110 00 001122344556788889999999999999999984
No 496
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=26.68 E-value=3.4e+02 Score=25.64 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=47.2
Q ss_pred hhcCCCCChhhHHHHHHHHHccCc----HHHHHHHHHHHHHC----CCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHH
Q 048780 104 MDQGMRPDVVTLNVMTDNLSKDGK----MEEANCLLEVMIQR----DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILI 175 (325)
Q Consensus 104 ~~~~~~~~~~~~~~ll~~~~~~g~----~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li 175 (325)
-..|.+.|...|..|+.++....+ ++++.++++-++.. |+.+..+ +.-.-..+.
T Consensus 209 WadgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lH------------------n~cf~WVlF 270 (677)
T PF05664_consen 209 WADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLH------------------NVCFAWVLF 270 (677)
T ss_pred cccCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHH------------------HHHHHHHHH
Confidence 346888999999999999887433 47788888777653 5543221 222334577
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 048780 176 NGYCKDRNVEDAVSLCREM 194 (325)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m 194 (325)
+.|+..|+.+-.......+
T Consensus 271 ~qyv~tge~~LL~~a~~~L 289 (677)
T PF05664_consen 271 RQYVATGEPDLLKAAIQQL 289 (677)
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 8888888755443333333
No 497
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.42 E-value=4.4e+02 Score=23.02 Aligned_cols=101 Identities=12% Similarity=-0.052 Sum_probs=62.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhC-CCCCChHhHHHHHHHHHH---cCCHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN-NVPPDSHVYTTYIDGLYK---NGFVLEAMKV 242 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 242 (325)
+......++... .|+...+..+++.....+...+......++.... ........+..++.++.+ .++.+.|+..
T Consensus 175 ~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~ 252 (413)
T PRK13342 175 DDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYY 252 (413)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 444444444432 7889999888888765543445555444443211 112222334555555554 5789999999
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 048780 243 FSAIGNHKCVLTIETCNCLIDGLCKIG 269 (325)
Q Consensus 243 ~~~m~~~~~~~~~~~~~~ll~~~~~~g 269 (325)
+..|.+.|..|....-..++.++-..|
T Consensus 253 l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 253 LARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 999999998877666666666655555
No 498
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=26.31 E-value=2.2e+02 Score=19.53 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHc-CCCC
Q 048780 185 EDAVSLCREMLSE-GIRA 201 (325)
Q Consensus 185 ~~a~~~~~~m~~~-g~~~ 201 (325)
+++.+.+.+++.. |+.|
T Consensus 6 ~~~~~~L~~Lk~~tgi~~ 23 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITP 23 (113)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 4566666666654 6666
No 499
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.24 E-value=2e+02 Score=18.99 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 322 (325)
.+...+++..-....|- ..|+..|+.++.+.|.-..|..+-+.+...|.
T Consensus 47 ~eq~~qmL~~W~~~~G~---~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 47 REQLYQMLLTWVNKTGR---KASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 55566666555544432 45577777777777777777777777766653
No 500
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.07 E-value=3.1e+02 Score=21.14 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048780 294 YNIMIHGFCKEGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 322 (325)
|..++..-.+....+++.++.++|.+.=+
T Consensus 142 W~~l~~~~~~~~~~~~~~~l~~ri~Elvl 170 (199)
T PF04090_consen 142 WILLIQEEDRESELDSYQQLIERIDELVL 170 (199)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 33444444344455567777777766433
Done!