Query 048780
Match_columns 325
No_of_seqs 392 out of 1607
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 23:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.7E-35 1.3E-39 253.5 22.9 219 2-304 3-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 9.9E-34 3.4E-38 244.6 22.6 183 113-325 27-209 (501)
3 2xpi_A Anaphase-promoting comp 99.9 4.5E-24 1.5E-28 190.3 29.9 270 2-320 286-579 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.4E-24 4.9E-29 193.5 26.0 195 109-325 302-513 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1E-18 3.4E-23 147.6 32.3 290 1-320 46-368 (388)
6 3spa_A Mtrpol, DNA-directed RN 99.8 2.9E-21 9.8E-26 172.8 11.1 138 167-324 126-264 (1134)
7 3spa_A Mtrpol, DNA-directed RN 99.8 1.9E-21 6.6E-26 173.9 8.6 151 111-305 126-286 (1134)
8 1w3b_A UDP-N-acetylglucosamine 99.8 1.2E-17 4E-22 141.0 31.3 287 1-320 12-334 (388)
9 2y4t_A DNAJ homolog subfamily 99.8 1.1E-17 3.7E-22 143.9 30.4 282 1-320 39-358 (450)
10 2y4t_A DNAJ homolog subfamily 99.8 9.4E-16 3.2E-20 131.8 28.5 264 7-320 11-324 (450)
11 3hym_B Cell division cycle pro 99.8 2.1E-15 7.2E-20 123.9 27.3 253 20-319 19-298 (330)
12 3ieg_A DNAJ homolog subfamily 99.7 2.4E-14 8.3E-19 118.9 32.4 281 1-320 16-335 (359)
13 2gw1_A Mitochondrial precursor 99.7 5.4E-15 1.8E-19 129.1 27.9 257 1-281 19-398 (514)
14 4eqf_A PEX5-related protein; a 99.7 1.5E-15 5.2E-20 126.9 22.5 254 2-316 79-352 (365)
15 3cv0_A Peroxisome targeting si 99.7 4.4E-15 1.5E-19 121.8 24.5 257 1-317 34-312 (327)
16 1fch_A Peroxisomal targeting s 99.7 4.5E-15 1.5E-19 124.0 24.6 271 2-316 39-355 (368)
17 3hym_B Cell division cycle pro 99.7 1.4E-13 4.9E-18 112.9 29.1 210 66-320 39-265 (330)
18 2gw1_A Mitochondrial precursor 99.7 7.1E-14 2.4E-18 122.0 28.5 297 1-320 52-478 (514)
19 1fch_A Peroxisomal targeting s 99.7 2.7E-14 9.1E-19 119.3 24.3 277 3-320 16-314 (368)
20 4eqf_A PEX5-related protein; a 99.7 4.1E-14 1.4E-18 118.2 24.1 238 22-320 64-310 (365)
21 3fp2_A TPR repeat-containing p 99.7 1.8E-13 6.1E-18 120.2 27.8 291 1-320 38-407 (537)
22 3mkr_A Coatomer subunit epsilo 99.6 5.3E-14 1.8E-18 113.6 21.2 242 1-319 12-263 (291)
23 3ieg_A DNAJ homolog subfamily 99.6 2.8E-12 9.6E-17 106.3 30.5 253 22-320 2-301 (359)
24 3fp2_A TPR repeat-containing p 99.6 9.2E-13 3.1E-17 115.7 28.3 245 2-320 216-491 (537)
25 2pl2_A Hypothetical conserved 99.6 2.7E-13 9.4E-18 104.6 21.7 200 20-318 2-212 (217)
26 3uq3_A Heat shock protein STI1 99.6 5E-13 1.7E-17 105.6 22.0 158 112-320 79-236 (258)
27 3cv0_A Peroxisome targeting si 99.6 1.3E-12 4.3E-17 107.1 25.1 239 22-320 20-269 (327)
28 2ho1_A Type 4 fimbrial biogene 99.6 2.2E-12 7.4E-17 101.8 25.2 202 23-320 37-238 (252)
29 1b89_A Protein (clathrin heavy 99.6 6.1E-14 2.1E-18 116.7 16.4 256 2-312 17-303 (449)
30 2ho1_A Type 4 fimbrial biogene 99.6 2.4E-12 8.3E-17 101.5 24.7 185 1-283 50-237 (252)
31 2vq2_A PILW, putative fimbrial 99.6 3E-12 1E-16 98.9 23.7 205 20-320 5-211 (225)
32 2vq2_A PILW, putative fimbrial 99.6 6.9E-12 2.3E-16 96.9 24.4 198 1-295 21-219 (225)
33 3u4t_A TPR repeat-containing p 99.5 2.7E-12 9.2E-17 102.4 22.5 226 1-320 16-250 (272)
34 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.5E-12 5E-17 104.1 20.8 237 1-314 18-269 (275)
35 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-12 5.8E-17 101.7 20.1 202 21-320 21-222 (243)
36 2q7f_A YRRB protein; TPR, prot 99.5 2.8E-12 9.6E-17 100.4 20.6 186 1-283 36-221 (243)
37 3mkr_A Coatomer subunit epsilo 99.5 5.6E-12 1.9E-16 101.7 22.6 229 1-312 47-286 (291)
38 2pl2_A Hypothetical conserved 99.5 3.8E-12 1.3E-16 98.2 19.6 195 1-282 18-212 (217)
39 2ond_A Cleavage stimulation fa 99.5 3.9E-11 1.3E-15 97.7 25.8 220 5-320 33-270 (308)
40 1ouv_A Conserved hypothetical 99.5 1.8E-10 6.1E-15 92.0 28.4 160 111-321 73-252 (273)
41 3vtx_A MAMA; tetratricopeptide 99.5 5.1E-11 1.7E-15 89.2 21.6 167 111-320 4-170 (184)
42 2h6f_A Protein farnesyltransfe 99.4 3.3E-11 1.1E-15 100.7 21.9 163 111-317 165-344 (382)
43 4a1s_A PINS, partner of inscut 99.4 1.2E-11 4E-16 104.9 16.8 265 1-319 61-371 (411)
44 3ro2_A PINS homolog, G-protein 99.4 1.5E-11 5.1E-16 100.9 16.5 268 1-320 18-332 (338)
45 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.5E-10 5.1E-15 92.3 21.8 212 35-321 17-245 (275)
46 3sf4_A G-protein-signaling mod 99.4 3.4E-11 1.1E-15 101.7 18.5 266 1-319 22-335 (406)
47 4abn_A Tetratricopeptide repea 99.4 2.9E-11 1E-15 104.5 18.3 214 4-316 84-317 (474)
48 1b89_A Protein (clathrin heavy 99.4 4.3E-12 1.5E-16 105.8 12.2 170 110-319 59-235 (449)
49 2xm6_A Protein corresponding t 99.4 4.8E-09 1.7E-13 91.1 32.2 278 2-321 93-433 (490)
50 2xm6_A Protein corresponding t 99.4 5.1E-09 1.7E-13 91.0 31.4 279 1-321 56-397 (490)
51 3vtx_A MAMA; tetratricopeptide 99.3 6.2E-10 2.1E-14 83.2 21.6 167 21-283 3-169 (184)
52 3as5_A MAMA; tetratricopeptide 99.3 1.8E-10 6.3E-15 85.8 18.7 166 112-320 8-173 (186)
53 3nf1_A KLC 1, kinesin light ch 99.3 8E-11 2.7E-15 95.6 17.5 228 21-319 25-306 (311)
54 3u4t_A TPR repeat-containing p 99.3 1.2E-09 4.2E-14 86.9 23.3 202 23-319 3-207 (272)
55 1ouv_A Conserved hypothetical 99.3 9.2E-09 3.2E-13 82.0 27.6 193 21-321 4-216 (273)
56 2ooe_A Cleavage stimulation fa 99.3 5.3E-09 1.8E-13 91.7 27.6 311 1-320 25-454 (530)
57 3uq3_A Heat shock protein STI1 99.3 5.9E-10 2E-14 87.8 19.3 121 121-282 114-234 (258)
58 4g1t_A Interferon-induced prot 99.3 5.7E-09 1.9E-13 90.0 26.8 293 1-321 64-460 (472)
59 3nf1_A KLC 1, kinesin light ch 99.3 3.2E-10 1.1E-14 92.0 17.0 202 1-282 40-305 (311)
60 4gyw_A UDP-N-acetylglucosamine 99.3 5.8E-10 2E-14 100.6 20.1 165 111-319 8-173 (723)
61 2ond_A Cleavage stimulation fa 99.3 3.5E-09 1.2E-13 86.1 22.9 185 5-284 81-270 (308)
62 2h6f_A Protein farnesyltransfe 99.3 1.6E-09 5.4E-14 90.6 21.2 197 23-317 97-302 (382)
63 3as5_A MAMA; tetratricopeptide 99.2 2.3E-09 7.8E-14 79.8 19.3 164 23-282 8-171 (186)
64 4abn_A Tetratricopeptide repea 99.2 5.2E-10 1.8E-14 96.6 17.5 186 1-281 115-318 (474)
65 2ooe_A Cleavage stimulation fa 99.2 1.1E-08 3.6E-13 89.9 25.3 218 6-319 256-491 (530)
66 1hz4_A MALT regulatory protein 99.2 4.7E-08 1.6E-12 81.6 27.7 266 1-319 27-321 (373)
67 3edt_B KLC 2, kinesin light ch 99.2 9.9E-10 3.4E-14 87.7 16.7 244 1-320 14-281 (283)
68 4gyw_A UDP-N-acetylglucosamine 99.2 3.4E-09 1.2E-13 95.6 20.3 166 21-282 7-172 (723)
69 2fo7_A Synthetic consensus TPR 99.2 6.4E-09 2.2E-13 72.9 17.2 131 170-321 3-133 (136)
70 1xi4_A Clathrin heavy chain; a 99.2 6.2E-08 2.1E-12 90.9 27.8 254 2-312 1090-1376(1630)
71 3ulq_A Response regulator aspa 99.2 5.5E-09 1.9E-13 87.7 19.7 176 112-319 184-367 (383)
72 1xi4_A Clathrin heavy chain; a 99.2 9.1E-08 3.1E-12 89.8 28.9 263 1-317 998-1306(1630)
73 4i17_A Hypothetical protein; T 99.1 1.7E-08 5.7E-13 78.2 20.7 168 110-320 5-209 (228)
74 2fo7_A Synthetic consensus TPR 99.1 1.2E-08 4.1E-13 71.4 16.4 128 114-282 3-130 (136)
75 3sf4_A G-protein-signaling mod 99.1 2.8E-08 9.7E-13 83.6 21.0 246 20-319 6-295 (406)
76 3edt_B KLC 2, kinesin light ch 99.1 3E-09 1E-13 84.8 14.0 142 112-283 43-197 (283)
77 4a1s_A PINS, partner of inscut 99.1 1.7E-08 5.8E-13 85.4 19.3 243 24-319 49-331 (411)
78 3ro2_A PINS homolog, G-protein 99.1 3.2E-08 1.1E-12 80.8 20.2 243 23-319 5-291 (338)
79 1qqe_A Vesicular transport pro 99.1 2.9E-08 1E-12 80.0 19.1 174 112-317 77-266 (292)
80 3q15_A PSP28, response regulat 99.0 2.8E-08 9.7E-13 83.2 19.4 175 112-319 182-364 (378)
81 4i17_A Hypothetical protein; T 99.0 1.5E-07 5E-12 72.8 22.1 162 21-271 5-169 (228)
82 4g1t_A Interferon-induced prot 99.0 1.3E-07 4.5E-12 81.5 22.3 271 1-294 107-469 (472)
83 3e4b_A ALGK; tetratricopeptide 99.0 1.1E-06 3.6E-11 75.5 27.0 183 110-322 174-389 (452)
84 3mv2_B Coatomer subunit epsilo 98.9 9.6E-08 3.3E-12 76.3 17.4 169 109-320 97-282 (310)
85 3qky_A Outer membrane assembly 98.9 1.5E-07 5.2E-12 74.3 18.0 175 111-320 14-224 (261)
86 2yhc_A BAMD, UPF0169 lipoprote 98.9 3E-07 1E-11 70.9 18.8 175 112-321 4-214 (225)
87 3e4b_A ALGK; tetratricopeptide 98.9 1.5E-07 5.1E-12 80.8 18.3 280 2-322 17-353 (452)
88 2pzi_A Probable serine/threoni 98.9 1.4E-07 4.9E-12 85.1 18.4 183 1-281 404-602 (681)
89 2r5s_A Uncharacterized protein 98.9 6E-08 2E-12 71.8 13.2 164 114-319 8-172 (176)
90 2vsy_A XCC0866; transferase, g 98.9 1.2E-07 4.2E-12 83.8 17.4 154 125-321 2-158 (568)
91 1hz4_A MALT regulatory protein 98.9 2.5E-06 8.4E-11 71.1 24.5 243 26-319 17-281 (373)
92 3qou_A Protein YBBN; thioredox 98.9 9.4E-08 3.2E-12 76.8 15.2 168 111-319 116-283 (287)
93 3qky_A Outer membrane assembly 98.9 9.9E-07 3.4E-11 69.6 20.9 192 20-284 12-224 (261)
94 3urz_A Uncharacterized protein 98.9 2E-07 7E-12 71.0 16.2 177 116-320 8-186 (208)
95 3ulq_A Response regulator aspa 98.8 1.6E-06 5.6E-11 72.5 22.6 174 118-319 109-292 (383)
96 3q15_A PSP28, response regulat 98.8 3.8E-06 1.3E-10 70.2 24.5 262 20-320 7-290 (378)
97 3rjv_A Putative SEL1 repeat pr 98.8 1.3E-06 4.3E-11 66.8 19.4 164 111-322 17-199 (212)
98 3u3w_A Transcriptional activat 98.8 8.5E-06 2.9E-10 65.5 25.1 208 83-318 42-264 (293)
99 2vsy_A XCC0866; transferase, g 98.8 2.6E-07 8.8E-12 81.8 17.4 154 1-250 2-158 (568)
100 3urz_A Uncharacterized protein 98.8 1.3E-06 4.6E-11 66.4 18.7 189 25-297 6-196 (208)
101 2pzi_A Probable serine/threoni 98.8 9.8E-07 3.4E-11 79.7 19.7 151 111-306 432-583 (681)
102 3mv2_B Coatomer subunit epsilo 98.8 1.8E-06 6.1E-11 69.0 18.8 135 111-284 135-282 (310)
103 4ga2_A E3 SUMO-protein ligase 98.7 1.3E-07 4.4E-12 68.0 11.3 144 120-306 5-149 (150)
104 1a17_A Serine/threonine protei 98.7 6.9E-07 2.4E-11 64.9 15.3 130 168-318 13-144 (166)
105 1qqe_A Vesicular transport pro 98.7 6.5E-07 2.2E-11 72.0 16.3 176 114-319 39-227 (292)
106 2ifu_A Gamma-SNAP; membrane fu 98.7 1E-06 3.5E-11 71.5 16.6 170 113-313 77-254 (307)
107 3rjv_A Putative SEL1 repeat pr 98.7 7.5E-06 2.6E-10 62.4 20.2 175 5-282 3-195 (212)
108 2r5s_A Uncharacterized protein 98.7 1.7E-07 5.7E-12 69.4 10.6 153 1-196 19-172 (176)
109 3qou_A Protein YBBN; thioredox 98.7 1.3E-06 4.6E-11 70.0 16.3 168 20-282 114-282 (287)
110 2yhc_A BAMD, UPF0169 lipoprote 98.7 8.1E-06 2.8E-10 62.8 20.2 203 22-283 3-212 (225)
111 3dra_A Protein farnesyltransfe 98.7 2.4E-05 8.1E-10 63.0 22.9 153 126-319 124-286 (306)
112 1na0_A Designed protein CTPR3; 98.6 2.1E-06 7.3E-11 58.8 14.7 114 168-302 9-122 (125)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.4E-06 1.2E-10 64.2 17.1 126 114-282 8-148 (213)
114 3gw4_A Uncharacterized protein 98.6 1.3E-06 4.5E-11 65.8 14.5 164 122-319 2-175 (203)
115 1na0_A Designed protein CTPR3; 98.6 2.7E-06 9.2E-11 58.3 14.7 115 112-267 9-123 (125)
116 1a17_A Serine/threonine protei 98.6 3E-06 1E-10 61.4 15.7 130 112-282 13-144 (166)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.3E-06 1.1E-10 64.2 16.6 129 170-320 8-150 (213)
118 2vyi_A SGTA protein; chaperone 98.6 3.3E-06 1.1E-10 58.4 14.2 120 167-307 11-130 (131)
119 2qfc_A PLCR protein; TPR, HTH, 98.6 5.3E-06 1.8E-10 66.7 17.2 178 113-318 76-264 (293)
120 2vyi_A SGTA protein; chaperone 98.6 3.2E-06 1.1E-10 58.4 13.6 120 111-271 11-130 (131)
121 2lni_A Stress-induced-phosphop 98.6 3.2E-06 1.1E-10 58.7 13.6 120 165-305 13-132 (133)
122 2lni_A Stress-induced-phosphop 98.5 4E-06 1.4E-10 58.2 13.9 120 109-269 13-132 (133)
123 2ifu_A Gamma-SNAP; membrane fu 98.5 2.5E-06 8.5E-11 69.2 14.5 176 114-318 38-222 (307)
124 4e6h_A MRNA 3'-END-processing 98.5 3.6E-05 1.2E-09 68.9 22.5 181 111-320 377-570 (679)
125 4ga2_A E3 SUMO-protein ligase 98.5 3.7E-06 1.3E-10 60.3 13.3 118 112-270 31-149 (150)
126 3gyz_A Chaperone protein IPGC; 98.5 4.7E-06 1.6E-10 59.7 13.5 104 167-292 35-138 (151)
127 4gco_A Protein STI-1; structur 98.5 1E-05 3.5E-10 56.0 14.2 95 114-248 15-109 (126)
128 2e2e_A Formate-dependent nitri 98.5 3.2E-06 1.1E-10 62.3 12.2 122 122-284 20-144 (177)
129 1p5q_A FKBP52, FK506-binding p 98.5 7.1E-06 2.4E-10 67.4 15.3 143 167-318 146-292 (336)
130 3gyz_A Chaperone protein IPGC; 98.4 2.6E-06 8.9E-11 61.1 10.9 100 219-321 35-134 (151)
131 4gco_A Protein STI-1; structur 98.4 1.3E-05 4.3E-10 55.5 14.2 97 168-283 13-109 (126)
132 2vgx_A Chaperone SYCD; alterna 98.4 1.1E-05 3.8E-10 57.6 13.6 99 167-284 20-118 (148)
133 2e2e_A Formate-dependent nitri 98.4 2.5E-06 8.7E-11 62.9 10.5 121 179-320 21-144 (177)
134 1elw_A TPR1-domain of HOP; HOP 98.4 3.4E-05 1.2E-09 52.0 15.5 97 167-282 3-99 (118)
135 3sz7_A HSC70 cochaperone (SGT) 98.4 1.1E-05 3.7E-10 58.6 13.6 99 167-284 10-108 (164)
136 1p5q_A FKBP52, FK506-binding p 98.4 1E-05 3.6E-10 66.4 14.8 144 111-282 146-292 (336)
137 2qfc_A PLCR protein; TPR, HTH, 98.4 0.00017 5.9E-09 57.8 21.7 139 116-282 119-264 (293)
138 3gw4_A Uncharacterized protein 98.4 1.8E-05 6.1E-10 59.5 15.0 169 1-248 5-175 (203)
139 2kck_A TPR repeat; tetratricop 98.4 1.2E-05 4.1E-10 53.8 12.6 102 219-321 5-107 (112)
140 2c2l_A CHIP, carboxy terminus 98.4 7.6E-06 2.6E-10 65.4 12.9 165 111-319 3-198 (281)
141 2uy1_A Cleavage stimulation fa 98.4 0.001 3.5E-08 57.5 27.1 180 110-319 211-412 (493)
142 3u3w_A Transcriptional activat 98.3 4.9E-05 1.7E-09 61.0 17.0 137 171-319 78-224 (293)
143 1elw_A TPR1-domain of HOP; HOP 98.3 5.6E-05 1.9E-09 50.9 14.9 109 112-261 4-112 (118)
144 2xcb_A PCRH, regulatory protei 98.3 1.9E-05 6.3E-10 55.9 12.8 98 167-283 17-114 (142)
145 3q7a_A Farnesyltransferase alp 98.3 0.0004 1.4E-08 56.6 21.9 165 114-319 125-330 (349)
146 2kck_A TPR repeat; tetratricop 98.3 2.3E-05 7.9E-10 52.3 12.6 98 167-283 5-105 (112)
147 4e6h_A MRNA 3'-END-processing 98.3 0.00013 4.5E-09 65.3 20.4 237 5-301 326-584 (679)
148 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-05 5.9E-10 56.6 12.1 99 219-320 20-118 (148)
149 3upv_A Heat shock protein STI1 98.3 3.1E-05 1.1E-09 53.3 13.1 96 168-282 4-99 (126)
150 2fbn_A 70 kDa peptidylprolyl i 98.3 2.6E-05 8.9E-10 58.6 13.6 147 168-320 38-186 (198)
151 1elr_A TPR2A-domain of HOP; HO 98.3 1.2E-05 4.1E-10 55.5 10.9 113 168-301 4-122 (131)
152 3dra_A Protein farnesyltransfe 98.3 0.00038 1.3E-08 55.9 20.9 223 4-283 49-286 (306)
153 3upv_A Heat shock protein STI1 98.3 2.2E-05 7.6E-10 54.1 12.2 98 220-320 4-101 (126)
154 3q49_B STIP1 homology and U bo 98.3 3.4E-05 1.2E-09 53.8 13.2 100 217-319 6-105 (137)
155 2xcb_A PCRH, regulatory protei 98.3 2.3E-05 7.7E-10 55.4 12.2 98 220-320 18-115 (142)
156 3q49_B STIP1 homology and U bo 98.3 4.5E-05 1.5E-09 53.2 13.5 98 166-282 7-104 (137)
157 3sz7_A HSC70 cochaperone (SGT) 98.2 2.7E-05 9.2E-10 56.5 12.2 99 219-320 10-108 (164)
158 2dba_A Smooth muscle cell asso 98.2 0.00011 3.6E-09 51.9 15.0 102 166-283 26-127 (148)
159 2uy1_A Cleavage stimulation fa 98.2 0.00042 1.5E-08 59.9 21.2 145 166-317 211-380 (493)
160 4gcn_A Protein STI-1; structur 98.2 6.3E-05 2.2E-09 52.0 13.0 107 168-295 8-120 (127)
161 2dba_A Smooth muscle cell asso 98.2 0.00013 4.3E-09 51.5 14.8 115 110-262 26-140 (148)
162 1elr_A TPR2A-domain of HOP; HO 98.2 3.5E-05 1.2E-09 53.0 11.3 114 112-264 4-121 (131)
163 4f3v_A ESX-1 secretion system 98.2 5.8E-05 2E-09 59.5 13.3 141 115-297 105-247 (282)
164 2fbn_A 70 kDa peptidylprolyl i 98.2 7.2E-05 2.5E-09 56.1 13.6 143 112-282 38-184 (198)
165 4b4t_Q 26S proteasome regulato 98.1 0.0014 4.7E-08 55.5 22.7 194 1-247 17-243 (434)
166 3ro3_A PINS homolog, G-protein 98.1 4.3E-05 1.5E-09 54.7 11.6 139 168-319 9-157 (164)
167 1hxi_A PEX5, peroxisome target 98.1 5.8E-05 2E-09 51.7 11.2 94 170-282 19-112 (121)
168 1hxi_A PEX5, peroxisome target 98.1 4.7E-05 1.6E-09 52.1 10.7 96 222-320 19-114 (121)
169 1wao_1 Serine/threonine protei 98.1 2E-05 6.7E-10 68.0 10.6 121 174-315 12-134 (477)
170 4b4t_Q 26S proteasome regulato 98.1 0.00017 5.8E-09 61.2 16.3 190 119-318 11-243 (434)
171 4gcn_A Protein STI-1; structur 98.1 4E-05 1.4E-09 53.0 10.0 99 221-320 9-112 (127)
172 4f3v_A ESX-1 secretion system 98.1 6.9E-05 2.4E-09 59.1 12.3 130 170-320 104-237 (282)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00011 3.8E-09 63.0 13.9 139 168-317 268-412 (457)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00012 4E-09 62.8 13.9 141 112-282 268-413 (457)
175 3ro3_A PINS homolog, G-protein 98.0 0.00024 8.1E-09 50.7 13.6 142 112-282 9-156 (164)
176 1wao_1 Serine/threonine protei 98.0 3.2E-05 1.1E-09 66.7 10.0 122 117-279 11-134 (477)
177 2xev_A YBGF; tetratricopeptide 98.0 0.00034 1.2E-08 48.0 13.8 94 172-284 6-105 (129)
178 3k9i_A BH0479 protein; putativ 98.0 1.8E-05 6.1E-10 53.9 6.6 107 180-302 2-108 (117)
179 2xev_A YBGF; tetratricopeptide 98.0 0.00024 8.1E-09 48.8 12.2 97 223-320 5-105 (129)
180 3n71_A Histone lysine methyltr 97.9 0.00014 4.9E-09 62.5 12.9 133 121-283 318-463 (490)
181 1ihg_A Cyclophilin 40; ppiase 97.9 0.00019 6.4E-09 59.7 13.1 137 170-312 225-362 (370)
182 2c2l_A CHIP, carboxy terminus 97.9 0.00034 1.2E-08 55.7 13.9 98 219-319 3-100 (281)
183 1ihg_A Cyclophilin 40; ppiase 97.9 0.00033 1.1E-08 58.2 14.3 138 113-276 224-362 (370)
184 3k9i_A BH0479 protein; putativ 97.9 4.9E-05 1.7E-09 51.6 7.0 87 232-320 2-90 (117)
185 3rkv_A Putative peptidylprolyl 97.8 0.00061 2.1E-08 49.1 11.9 109 168-283 11-125 (162)
186 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00019 6.4E-09 58.9 9.9 142 168-320 179-328 (338)
187 3rkv_A Putative peptidylprolyl 97.7 0.0005 1.7E-08 49.5 11.0 98 221-320 12-126 (162)
188 3q7a_A Farnesyltransferase alp 97.7 0.011 3.6E-07 48.3 19.0 212 3-285 69-332 (349)
189 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00032 1.1E-08 57.5 10.3 140 113-282 180-326 (338)
190 2l6j_A TPR repeat-containing p 97.6 0.00013 4.4E-09 48.6 6.0 94 167-278 3-101 (111)
191 3dss_A Geranylgeranyl transfer 97.6 0.02 6.9E-07 46.4 23.4 165 110-319 106-303 (331)
192 1klx_A Cysteine rich protein B 97.6 0.0047 1.6E-07 43.1 14.0 108 126-282 9-124 (138)
193 2hr2_A Hypothetical protein; a 97.6 0.0016 5.5E-08 46.4 11.3 113 113-248 12-130 (159)
194 2kat_A Uncharacterized protein 97.5 0.00033 1.1E-08 47.1 7.4 65 217-282 16-80 (115)
195 1klx_A Cysteine rich protein B 97.5 0.0046 1.6E-07 43.2 13.2 113 181-322 8-128 (138)
196 3dss_A Geranylgeranyl transfer 97.5 0.026 8.7E-07 45.8 19.7 150 128-320 90-267 (331)
197 1na3_A Designed protein CTPR2; 97.5 0.0024 8.2E-08 40.4 10.8 62 169-248 10-71 (91)
198 2l6j_A TPR repeat-containing p 97.5 0.0007 2.4E-08 44.9 8.3 92 219-314 3-101 (111)
199 3ma5_A Tetratricopeptide repea 97.5 0.00043 1.5E-08 45.4 6.9 65 217-282 4-68 (100)
200 2hr2_A Hypothetical protein; a 97.5 0.003 1E-07 45.0 11.5 97 223-319 14-130 (159)
201 3n71_A Histone lysine methyltr 97.4 0.0063 2.2E-07 52.4 15.2 108 111-248 350-463 (490)
202 2kat_A Uncharacterized protein 97.4 0.0016 5.5E-08 43.7 9.2 79 238-319 3-81 (115)
203 1na3_A Designed protein CTPR2; 97.4 0.003 1E-07 40.0 10.0 82 219-303 8-89 (91)
204 1dce_A Protein (RAB geranylger 97.3 0.015 5.3E-07 51.1 17.0 138 128-308 89-243 (567)
205 3ma5_A Tetratricopeptide repea 97.2 0.0039 1.3E-07 40.6 9.0 65 167-249 6-70 (100)
206 1dce_A Protein (RAB geranylger 97.2 0.054 1.9E-06 47.6 18.8 152 126-320 43-221 (567)
207 3qwp_A SET and MYND domain-con 96.9 0.011 3.7E-07 50.1 11.4 100 119-247 294-398 (429)
208 3qwp_A SET and MYND domain-con 96.8 0.0091 3.1E-07 50.5 10.5 93 227-319 294-399 (429)
209 3qww_A SET and MYND domain-con 96.8 0.0081 2.8E-07 50.8 10.1 92 125-247 311-409 (433)
210 3qww_A SET and MYND domain-con 96.8 0.0067 2.3E-07 51.3 9.6 88 232-319 310-410 (433)
211 1zu2_A Mitochondrial import re 96.7 0.0046 1.6E-07 44.0 6.6 114 179-320 13-147 (158)
212 3mkq_A Coatomer beta'-subunit; 96.6 0.02 6.9E-07 52.6 12.2 84 167-282 680-763 (814)
213 2kc7_A BFR218_protein; tetratr 96.6 0.019 6.6E-07 36.9 8.5 74 1-77 13-89 (99)
214 1zu2_A Mitochondrial import re 96.5 0.0096 3.3E-07 42.3 7.2 102 122-265 12-134 (158)
215 3ly7_A Transcriptional activat 96.4 0.11 3.9E-06 42.5 13.7 74 217-295 274-347 (372)
216 3bee_A Putative YFRE protein; 96.4 0.086 2.9E-06 33.7 11.1 67 217-284 3-72 (93)
217 2kc7_A BFR218_protein; tetratr 96.2 0.059 2E-06 34.5 9.5 57 227-284 7-64 (99)
218 3mkq_B Coatomer subunit alpha; 96.2 0.21 7.3E-06 36.0 12.6 51 175-248 12-62 (177)
219 1wy6_A Hypothetical protein ST 96.2 0.17 5.9E-06 34.6 13.3 68 254-323 90-157 (172)
220 3mkq_A Coatomer beta'-subunit; 96.0 0.17 5.6E-06 46.6 14.7 77 116-248 633-709 (814)
221 1pc2_A Mitochondria fission pr 95.9 0.1 3.5E-06 36.7 9.6 64 218-282 30-98 (152)
222 3mkq_B Coatomer subunit alpha; 95.8 0.33 1.1E-05 35.0 15.5 130 119-317 12-141 (177)
223 3ly7_A Transcriptional activat 95.8 0.63 2.1E-05 38.1 15.6 73 167-260 276-348 (372)
224 1v54_E Cytochrome C oxidase po 95.1 0.36 1.2E-05 30.9 8.9 68 7-75 29-96 (109)
225 3bee_A Putative YFRE protein; 95.0 0.33 1.1E-05 30.9 9.2 67 166-250 4-73 (93)
226 2v5f_A Prolyl 4-hydroxylase su 95.0 0.28 9.4E-06 31.9 9.0 73 110-197 3-75 (104)
227 1pc2_A Mitochondria fission pr 94.6 0.46 1.6E-05 33.4 9.6 83 235-320 13-100 (152)
228 2v5f_A Prolyl 4-hydroxylase su 94.4 0.29 9.8E-06 31.8 8.0 70 219-291 4-79 (104)
229 1nzn_A CGI-135 protein, fissio 94.3 0.54 1.9E-05 31.8 9.1 85 233-320 14-103 (126)
230 1v54_E Cytochrome C oxidase po 94.2 0.44 1.5E-05 30.5 7.8 64 235-300 25-88 (109)
231 2ff4_A Probable regulatory pro 94.1 0.91 3.1E-05 37.7 12.2 74 223-297 174-251 (388)
232 2y69_E Cytochrome C oxidase su 93.6 0.97 3.3E-05 30.8 8.9 68 7-75 72-139 (152)
233 4h7y_A Dual specificity protei 93.5 1.3 4.5E-05 30.9 10.1 121 167-301 12-138 (161)
234 2ff4_A Probable regulatory pro 93.1 0.53 1.8E-05 39.1 9.1 66 258-325 174-244 (388)
235 3u64_A Protein TP_0956; tetrat 92.7 0.55 1.9E-05 37.0 7.9 76 2-77 218-297 (301)
236 1nzn_A CGI-135 protein, fissio 92.1 1.9 6.5E-05 29.1 10.2 91 175-284 8-103 (126)
237 4b4t_P 26S proteasome regulato 91.9 5.2 0.00018 33.9 19.2 271 2-314 30-318 (445)
238 2y69_E Cytochrome C oxidase su 91.9 1.3 4.5E-05 30.1 7.8 64 235-300 68-131 (152)
239 4gns_B Protein CSD3, chitin bi 91.4 6.3 0.00022 35.8 14.2 55 118-194 343-397 (754)
240 4gns_B Protein CSD3, chitin bi 91.3 2.5 8.5E-05 38.4 11.5 53 262-317 344-397 (754)
241 3u64_A Protein TP_0956; tetrat 91.2 1.9 6.7E-05 33.9 9.5 63 220-282 199-267 (301)
242 4fhn_B Nucleoporin NUP120; pro 90.6 10 0.00034 36.6 15.7 192 111-318 841-1048(1139)
243 1wy6_A Hypothetical protein ST 90.1 3.3 0.00011 28.4 13.5 127 35-200 19-157 (172)
244 3lpz_A GET4 (YOR164C homolog); 89.5 7.2 0.00025 31.4 16.1 163 24-196 36-215 (336)
245 2uwj_G Type III export protein 88.9 3.2 0.00011 26.5 7.6 79 234-321 20-98 (115)
246 2p58_C Putative type III secre 88.7 3.3 0.00011 26.5 8.3 79 234-321 21-99 (116)
247 4fhn_B Nucleoporin NUP120; pro 88.3 16 0.00054 35.3 15.2 135 172-310 846-990 (1139)
248 4b4t_P 26S proteasome regulato 88.2 11 0.00037 31.9 16.4 177 126-318 30-245 (445)
249 4h7y_A Dual specificity protei 88.2 5.1 0.00017 28.1 11.2 118 111-263 12-136 (161)
250 1zbp_A Hypothetical protein VP 87.0 9.2 0.00031 29.7 11.3 57 119-197 4-60 (273)
251 3o48_A Mitochondria fission 1 85.6 2.1 7.2E-05 29.1 5.5 58 3-62 58-115 (134)
252 1y8m_A FIS1; mitochondria, unk 85.6 3.4 0.00012 28.5 6.6 56 3-60 57-112 (144)
253 1zbp_A Hypothetical protein VP 84.3 13 0.00043 28.9 10.7 113 1-141 10-129 (273)
254 1wdy_A 2-5A-dependent ribonucl 83.5 9.3 0.00032 29.4 9.6 88 229-325 188-280 (285)
255 3txn_A 26S proteasome regulato 82.1 20 0.0007 29.7 11.4 146 169-314 20-204 (394)
256 4b4t_R RPN7, 26S proteasome re 82.0 7.7 0.00026 32.6 8.9 98 221-318 132-235 (429)
257 3ffl_A Anaphase-promoting comp 81.4 4 0.00014 29.0 5.7 92 227-318 27-149 (167)
258 3lvg_A Clathrin heavy chain 1; 79.6 0.44 1.5E-05 40.6 0.5 162 86-280 115-287 (624)
259 2wpv_A GET4, UPF0363 protein Y 79.5 22 0.00075 28.4 16.8 71 24-99 34-104 (312)
260 4b4t_R RPN7, 26S proteasome re 78.6 22 0.00074 29.9 10.5 101 170-285 133-238 (429)
261 1k1a_A B-cell lymphoma 3-encod 78.1 19 0.00064 26.8 9.7 28 119-146 13-40 (241)
262 3o48_A Mitochondria fission 1 77.7 14 0.00048 25.1 9.6 66 218-283 38-106 (134)
263 3t8k_A Uncharacterized protein 77.0 12 0.0004 27.1 7.5 137 174-324 41-184 (186)
264 1wdy_A 2-5A-dependent ribonucl 76.6 13 0.00044 28.5 8.3 25 118-146 42-66 (285)
265 4a1g_A Mitotic checkpoint seri 75.8 12 0.00041 26.2 6.7 53 4-56 81-134 (152)
266 3lpz_A GET4 (YOR164C homolog); 75.0 31 0.0011 27.8 20.7 72 114-221 37-112 (336)
267 2uwj_G Type III export protein 73.4 15 0.00052 23.5 6.1 70 4-79 22-98 (115)
268 2wvi_A Mitotic checkpoint seri 72.6 15 0.00052 26.0 6.7 55 5-59 77-132 (164)
269 2p58_C Putative type III secre 72.3 16 0.00056 23.4 6.8 70 4-79 23-99 (116)
270 1y8m_A FIS1; mitochondria, unk 71.7 22 0.00075 24.5 10.2 67 218-284 37-106 (144)
271 3esl_A Checkpoint serine/threo 69.6 16 0.00055 26.9 6.4 53 4-56 95-148 (202)
272 2rfa_A Transient receptor pote 68.1 33 0.0011 25.3 8.6 56 262-323 125-183 (232)
273 3esl_A Checkpoint serine/threo 67.8 34 0.0012 25.2 9.2 57 125-201 92-148 (202)
274 3aji_A 26S proteasome non-ATPa 65.0 31 0.0011 25.4 7.8 15 265-279 146-160 (231)
275 4aez_C MAD3, mitotic spindle c 64.4 24 0.00082 26.5 6.6 53 4-56 130-183 (223)
276 2ion_A PDCD4, programmed cell 62.6 36 0.0012 23.7 8.5 70 222-293 11-82 (152)
277 1zl8_A LIN-7; heterodimer, alp 58.0 15 0.00052 19.8 3.3 19 3-21 8-26 (53)
278 2nsz_A Programmed cell death p 57.4 41 0.0014 22.6 9.9 69 223-293 10-80 (129)
279 4b4t_S RPN3, 26S proteasome re 57.0 96 0.0033 26.8 14.2 62 221-282 232-297 (523)
280 3t8k_A Uncharacterized protein 56.8 41 0.0014 24.1 6.9 137 118-288 41-183 (186)
281 3t5v_B Nuclear mRNA export pro 56.7 76 0.0026 26.9 9.1 72 113-197 177-249 (455)
282 2wpv_A GET4, UPF0363 protein Y 55.9 76 0.0026 25.3 19.0 159 114-319 35-216 (312)
283 3jxi_A Vanilloid receptor-rela 55.9 30 0.001 26.2 6.3 30 118-147 8-37 (260)
284 3lvg_A Clathrin heavy chain 1; 54.3 0.1 3.5E-06 44.3 -8.2 83 219-310 53-135 (624)
285 1wty_A Hypothetical protein TT 52.2 48 0.0016 21.8 6.0 60 218-282 19-79 (119)
286 4g8k_A 2-5A-dependent ribonucl 52.0 86 0.003 24.8 12.7 83 227-325 243-328 (337)
287 2ion_A PDCD4, programmed cell 51.3 53 0.0018 22.9 6.3 64 257-322 11-76 (152)
288 4aez_C MAD3, mitotic spindle c 51.2 62 0.0021 24.3 6.9 53 129-201 131-183 (223)
289 3eyy_A Putative iron uptake re 50.9 52 0.0018 22.6 6.2 45 227-272 25-69 (145)
290 3ffl_A Anaphase-promoting comp 50.8 64 0.0022 22.9 9.0 103 170-282 22-149 (167)
291 2fe3_A Peroxide operon regulat 50.3 58 0.002 22.3 7.4 47 226-272 27-73 (145)
292 1mzb_A Ferric uptake regulatio 50.3 56 0.0019 22.1 6.3 47 226-272 23-70 (136)
293 3kea_A K1L; tropism, ANK repea 49.8 78 0.0027 24.4 7.9 18 29-46 34-51 (285)
294 2xig_A Ferric uptake regulatio 49.8 61 0.0021 22.4 6.8 48 225-272 31-78 (150)
295 2keb_A DNA polymerase subunit 48.4 50 0.0017 21.0 5.9 33 6-38 27-59 (101)
296 3eiq_C Programmed cell death p 47.6 1.1E+02 0.0039 24.9 13.0 25 26-50 57-81 (358)
297 3bu8_A Telomeric repeat-bindin 47.5 85 0.0029 23.4 8.0 48 236-283 88-142 (235)
298 3aji_A 26S proteasome non-ATPa 47.2 81 0.0028 23.0 9.1 21 29-49 9-29 (231)
299 2nsz_A Programmed cell death p 46.4 64 0.0022 21.6 7.5 64 257-322 9-74 (129)
300 3bu8_A Telomeric repeat-bindin 46.3 49 0.0017 24.7 5.5 48 4-51 88-142 (235)
301 4a1g_A Mitotic checkpoint seri 46.0 73 0.0025 22.2 8.9 53 129-201 82-134 (152)
302 2w57_A Ferric uptake regulatio 45.5 63 0.0022 22.3 6.0 46 227-272 23-69 (150)
303 2d2s_A Exocyst complex compone 45.1 98 0.0034 23.4 10.4 88 227-318 25-118 (235)
304 3hra_A Ankyrin repeat family p 44.2 83 0.0028 22.3 7.5 19 227-245 110-128 (201)
305 3ltj_A Alpharep-4; protein eng 43.8 86 0.0029 22.4 15.3 78 220-306 90-167 (201)
306 3kae_A CDC27, possible protein 43.3 90 0.0031 22.5 6.6 139 177-321 71-238 (242)
307 3ljn_A Hypothetical protein; a 42.5 1.1E+02 0.0037 24.5 8.0 27 175-201 88-114 (364)
308 2b7e_A PRE-mRNA processing pro 41.8 41 0.0014 19.0 3.6 33 4-36 2-35 (59)
309 1ug3_A EIF4GI, eukaryotic prot 41.0 1.3E+02 0.0044 24.2 8.0 141 116-280 15-166 (339)
310 2o03_A Probable zinc uptake re 40.1 52 0.0018 22.0 4.8 48 225-272 15-62 (131)
311 1qsa_A Protein (soluble lytic 38.4 2.1E+02 0.0073 25.4 17.7 230 1-287 115-351 (618)
312 2yru_A Steroid receptor RNA ac 38.3 61 0.0021 21.5 4.6 42 10-51 48-89 (118)
313 3kea_A K1L; tropism, ANK repea 38.0 1.4E+02 0.0046 23.0 9.1 14 118-131 65-78 (285)
314 4ets_A Ferric uptake regulatio 36.8 1.1E+02 0.0037 21.5 6.6 72 184-273 13-87 (162)
315 2wvi_A Mitotic checkpoint seri 36.3 1.1E+02 0.0039 21.6 9.2 54 129-202 77-130 (164)
316 3mwm_A ZUR, putative metal upt 36.0 47 0.0016 22.6 4.0 49 224-272 17-65 (139)
317 3ltm_A Alpha-REP4; protein eng 35.8 1.2E+02 0.0042 21.8 15.4 17 254-270 125-141 (211)
318 3bqo_A Telomeric repeat-bindin 34.6 91 0.0031 22.9 5.3 47 236-282 94-144 (211)
319 3eu9_A Huntingtin-interacting 34.2 1.3E+02 0.0046 21.8 8.1 39 8-46 22-62 (240)
320 3eu9_A Huntingtin-interacting 34.1 1.3E+02 0.0046 21.8 7.6 56 261-321 180-237 (240)
321 2fu4_A Ferric uptake regulatio 33.8 76 0.0026 18.9 5.2 61 244-306 6-67 (83)
322 2yru_A Steroid receptor RNA ac 33.8 90 0.0031 20.6 4.9 42 242-283 48-89 (118)
323 4b4t_S RPN3, 26S proteasome re 33.0 1.6E+02 0.0053 25.5 7.4 65 254-319 230-298 (523)
324 3qil_A Clathrin heavy chain 1; 32.8 35 0.0012 22.7 2.7 56 111-190 31-86 (125)
325 3ygs_P Procaspase 9; apoptosis 32.0 72 0.0025 20.1 4.1 33 4-40 53-85 (97)
326 3b7b_A Euchromatic histone-lys 32.0 1.5E+02 0.0051 21.6 10.9 84 228-320 149-236 (237)
327 2zu6_B Programmed cell death p 31.9 1.9E+02 0.0066 22.9 8.2 69 223-293 169-239 (307)
328 2dod_A Transcription elongatio 31.7 60 0.002 19.8 3.5 31 271-302 16-46 (82)
329 3lxu_X Tripeptidyl-peptidase 2 31.6 3.2E+02 0.011 27.0 9.9 84 236-323 1265-1348(1354)
330 2pby_A Glutaminase; secsg, rik 30.8 1.1E+02 0.0037 24.3 5.7 64 83-152 90-160 (308)
331 3f3f_C Nucleoporin NUP85; stru 30.4 2.8E+02 0.0095 24.3 8.5 24 23-47 243-266 (570)
332 2xig_A Ferric uptake regulatio 30.0 1.4E+02 0.0046 20.6 6.3 63 243-307 15-77 (150)
333 4ady_A RPN2, 26S proteasome re 29.9 3.6E+02 0.012 25.5 19.2 50 2-51 388-439 (963)
334 2fe3_A Peroxide operon regulat 29.8 1.3E+02 0.0045 20.4 6.1 62 244-307 11-72 (145)
335 3nr7_A DNA-binding protein H-N 29.3 95 0.0033 19.2 4.1 16 309-324 60-75 (86)
336 3eyy_A Putative iron uptake re 28.4 1.4E+02 0.0047 20.4 5.4 61 243-306 7-67 (145)
337 2f6m_A Suppressor protein STP2 28.0 92 0.0032 18.0 4.1 46 223-269 5-50 (65)
338 2ijq_A Hypothetical protein; s 28.0 1.6E+02 0.0054 20.7 8.2 54 230-283 42-103 (161)
339 1uzc_A Hypothetical protein FL 27.2 65 0.0022 19.0 3.0 32 271-303 14-45 (71)
340 2etb_A Transient receptor pote 26.7 1.1E+02 0.0038 22.8 5.3 30 117-146 4-33 (256)
341 3twr_A Tankyrase-2; ankyrin re 26.7 1.5E+02 0.0052 20.0 5.8 14 178-191 15-28 (165)
342 4fke_A Aminopeptidase N; zinc 26.1 4.1E+02 0.014 24.9 16.5 27 171-197 689-718 (909)
343 1jog_A Hypothetical protein HI 26.0 1.3E+02 0.0046 20.6 5.0 81 236-319 54-141 (146)
344 1n11_A Ankyrin; clathrin, BAND 25.7 2.8E+02 0.0094 22.8 10.8 259 8-316 27-300 (437)
345 1k1a_A B-cell lymphoma 3-encod 25.6 1.4E+02 0.0048 21.8 5.7 19 230-248 16-34 (241)
346 1oai_A Nuclear RNA export fact 25.1 68 0.0023 18.1 2.7 23 36-58 33-56 (59)
347 3f3f_C Nucleoporin NUP85; stru 24.9 3.5E+02 0.012 23.7 8.4 55 254-311 515-569 (570)
348 2d2s_A Exocyst complex compone 24.9 2.2E+02 0.0077 21.4 9.7 92 174-281 24-117 (235)
349 1mzb_A Ferric uptake regulatio 24.4 1.4E+02 0.0048 20.0 4.8 60 245-306 8-68 (136)
350 1q2z_A ATP-dependent DNA helic 24.2 20 0.00068 23.9 0.4 32 235-266 42-74 (120)
351 3bge_A Predicted ATPase; struc 24.1 2.2E+02 0.0074 20.9 8.0 72 117-188 9-83 (201)
352 3qil_A Clathrin heavy chain 1; 23.6 92 0.0031 20.7 3.5 52 223-277 35-86 (125)
353 1wgl_A TOLL-interacting protei 23.4 1.1E+02 0.0037 17.2 3.7 24 34-57 34-57 (59)
354 3l6a_A Eukaryotic translation 22.8 3.1E+02 0.011 22.3 7.4 59 223-282 15-75 (364)
355 3eiq_C Programmed cell death p 20.9 3.4E+02 0.012 22.1 14.1 64 257-322 219-284 (358)
356 1a1w_A FADD protein; apoptosis 20.8 1.2E+02 0.004 18.9 3.5 39 6-45 41-79 (91)
357 2bn5_A PSI; nuclear protein, s 20.8 86 0.003 15.1 2.2 22 297-318 8-29 (33)
358 2w57_A Ferric uptake regulatio 20.7 1.6E+02 0.0054 20.2 4.6 62 244-307 6-68 (150)
359 4ets_A Ferric uptake regulatio 20.6 2.2E+02 0.0074 19.9 5.3 70 237-307 14-85 (162)
360 2pk8_A Uncharacterized protein 20.5 98 0.0033 19.3 2.9 17 309-325 21-37 (103)
361 3us6_A Histidine-containing ph 20.4 2.2E+02 0.0075 19.7 10.0 109 115-248 10-121 (153)
362 2rg8_A Programmed cell death p 20.2 2.3E+02 0.008 19.9 7.7 67 223-293 13-81 (165)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.7e-35 Score=253.46 Aligned_cols=219 Identities=14% Similarity=0.109 Sum_probs=173.5
Q ss_pred CCc-chHHHHHHHHHhcCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc
Q 048780 2 GRA-SGGFVLLGRILMSCFTPNM-VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79 (325)
Q Consensus 2 g~~-~~A~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~ 79 (325)
|+. ..+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|
T Consensus 3 G~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-------------------------- 56 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-------------------------- 56 (501)
T ss_dssp ---------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--------------------------
T ss_pred ccccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------------------------
Confidence 444 3455666777777766554 468999999999999999999999999877
Q ss_pred CCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 048780 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159 (325)
Q Consensus 80 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 159 (325)
++||..|||+||.+|++.+..... .+.+.++.|.++|++|...|+.|
T Consensus 57 ---v~pd~~tyn~Li~~c~~~~~~~~~----------------~~~~~l~~A~~lf~~M~~~G~~P-------------- 103 (501)
T 4g26_A 57 ---VQLSQYHYNVLLYVCSLAEAATES----------------SPNPGLSRGFDIFKQMIVDKVVP-------------- 103 (501)
T ss_dssp ---CCCCHHHHHHHHHHHTTCCCCSSS----------------SCCHHHHHHHHHHHHHHHTTCCC--------------
T ss_pred ---CCCCHhHHHHHHHHHHhCCchhhh----------------hhcchHHHHHHHHHHHHHhCCCC--------------
Confidence 456666666667776665543221 23456899999999999999888
Q ss_pred hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHH
Q 048780 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239 (325)
Q Consensus 160 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (325)
|..+|++||.+|++.|++++|.++|++|.+.|+.| |..+|+++|.+|++.|++++|
T Consensus 104 -------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-----------------d~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 104 -------NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-----------------RLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp -------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------ccceehHHHHHHHHCCCHHHH
Confidence 78889999999999999999999999999988666 555556669999999999999
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHcc
Q 048780 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304 (325)
Q Consensus 240 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 304 (325)
.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|. +.|..|+..||+.++..|...
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999 889999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.9e-34 Score=244.58 Aligned_cols=183 Identities=12% Similarity=0.137 Sum_probs=157.4
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++...... ..+.+.+++|.++|+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------------~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------------SSPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS------------SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh------------hhhcchHHHHHHHHH
Confidence 46888999999999999999999999999999955544444444432111000 012345799999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
+|.+.|+.|| ..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++
T Consensus 95 ~M~~~G~~Pd-----------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 95 QMIVDKVVPN-----------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp HHHHTTCCCC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCCCC-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 9999986664 55556669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 325 (325)
+|.++|+.|. +.|+.||..||++||.+|++.|++++|.+++++|.+.|+.|+
T Consensus 158 ~A~~l~~~M~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 158 KAYEVDAHMV-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 9999999999 789999999999999999999999999999999999999996
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=4.5e-24 Score=190.30 Aligned_cols=270 Identities=10% Similarity=-0.059 Sum_probs=233.7
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~ 72 (325)
|++++|+++|+.+.+. +++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+++.+. +.|.+++
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLIS 362 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6788999999998876 5899999999999999999999999999999875 34667777766 8899999
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCchhhc--------CCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ--------GMR-PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~--------~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 143 (325)
+++.+.. +.+..+|+.+...|.+.|+..+. ... .+..+|+.++..|.+.|++++|+++|+++.+.+
T Consensus 363 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 363 NDLVDRH----PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHC----TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHhhC----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9998654 56789999999999999982211 123 357799999999999999999999999998763
Q ss_pred CCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhH
Q 048780 144 NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223 (325)
Q Consensus 144 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~ 223 (325)
|+ +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 438 -~~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------~~~~~~~ 478 (597)
T 2xpi_A 438 -QG--------------------THLPYLFLGMQHMQLGNILLANEYLQSSYALF------------------QYDPLLL 478 (597)
T ss_dssp -TT--------------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------CCCHHHH
T ss_pred -cc--------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCChHHH
Confidence 22 67889999999999999999999999998762 4467888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhC----CCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHH
Q 048780 224 TTYIDGLYKNGFVLEAMKVFSAIGNH----KCVLT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297 (325)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 297 (325)
+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++|+.+.+.. +.+..+|..+
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 556 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 99999999999999999999999775 66777 7899999999999999999999999987432 4478999999
Q ss_pred HHHHHccCChHHHHHHHHHHHHc
Q 048780 298 IHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..+|.+.|++++|.++++++.+.
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999875
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.4e-24 Score=193.52 Aligned_cols=195 Identities=10% Similarity=-0.024 Sum_probs=161.6
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh-------------cCCCCCchhhHHHHH
Q 048780 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-------------SKGCRHDVYSYNILI 175 (325)
Q Consensus 109 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-------------~~~~~~~~~~~~~li 175 (325)
+++..+|+.++..|.+.|++++|+++|+++.+.+. .+..++..++.++... ....+.+..+|+.+.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 380 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 47888899999999999999999999999987653 3666777777777651 122345677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH
Q 048780 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255 (325)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 255 (325)
..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+.
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 441 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTM------------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTH 441 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCS
T ss_pred HHHHHhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 8999999999999999888764 23467789999999999999999999999998765 3478
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCC
Q 048780 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET----GLEPN 325 (325)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~pd 325 (325)
.+|..+..+|.+.|++++|.++|+.+.+.. +.+..+|..+...|.+.|++++|.++++++.+. +..|+
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 899999999999999999999999997432 447889999999999999999999999999876 55553
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.87 E-value=1e-18 Score=147.56 Aligned_cols=290 Identities=13% Similarity=0.072 Sum_probs=226.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHH---------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV-ITFNTLA---------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~l~---------~~a~~ 70 (325)
.|++++|...++...+.. +.+..+|..+...|.+.|++++|...|+++.+. .|+. ..|..+. +.|.+
T Consensus 46 ~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 478899999999888765 567889999999999999999999999999875 4554 3455543 78899
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhh--------cCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 141 (325)
.|+++.+.. +.+...+..+...+...|+..+ ....| +..+|..+...+.+.|++++|.+.|+++.+.
T Consensus 123 ~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 123 AYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHC----TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999988764 3345667777778888787211 12234 4678899999999999999999999999876
Q ss_pred CCCCCc-ccHHHHHHHHHhh-------------cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 048780 142 DVNPNT-CTYNTLMDGFAWW-------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207 (325)
Q Consensus 142 g~~~~~-~~~~~ll~~~~~~-------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 207 (325)
+ |+. ..+..+-..+... -...+.+..++..+..+|.+.|++++|.+.|+++.+..
T Consensus 199 ~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 267 (388)
T 1w3b_A 199 D--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------- 267 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---------
T ss_pred C--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------
Confidence 3 432 2333333333220 01122356788889999999999999999999998752
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 048780 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287 (325)
Q Consensus 208 ~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (325)
+.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+. .
T Consensus 268 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 335 (388)
T 1w3b_A 268 ---------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--F 335 (388)
T ss_dssp ---------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--C
T ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3356678888999999999999999999998764 457889999999999999999999999998732 2
Q ss_pred CCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445788999999999999999999999998863
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=172.84 Aligned_cols=138 Identities=7% Similarity=0.001 Sum_probs=115.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
-..+||++|++||+.|++++|.++|.+|.+.+ ..++.||..+||+||.+|++.|++++|.++|++|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~--------------~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR--------------QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH--------------HHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------------hcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45689999999999999999999999987531 1124566777777799999999999999999999
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRL-KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
.+.|+.||..||+++|.++++.|+. ++|.++|++|. ..|+.||..+|++++.++.+. .+++..+++ .-+++|
T Consensus 192 ~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred HHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence 9999999999999999999999985 78999999999 889999999999999776654 444444444 334444
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=173.90 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=122.3
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHC---CCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQR---DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 187 (325)
-..||+++|++|++.|++++|.++|++|.+. |+.| |..+||+||.+||+.|++++|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P---------------------dvvTYNtLI~Glck~G~~~eA 184 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL---------------------TLDMYNAVMLGWARQGAFKEL 184 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC---------------------CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC---------------------CHhHHHHHHHHHHhCCCHHHH
Confidence 4568999999999999999999999988753 5555 899999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCC-HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 048780 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF-VLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266 (325)
Q Consensus 188 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 266 (325)
.++|++|.+.|+.||. .|||+||.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.
T Consensus 185 ~~Lf~eM~~~G~~PDv-----------------vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 185 VYVLFMVKDAGLTPDL-----------------LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHHTTCCCCH-----------------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHHHHcCCCCcH-----------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 9999999999876654 555555999999998 4789999999999999999999999998776
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCc------HHhHHHHHHHHHccC
Q 048780 267 KIGRLKIAWDIFHMLMQNPGLTPD------VVTYNIMIHGFCKEG 305 (325)
Q Consensus 267 ~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g 305 (325)
+. .+++.++.+ ..++.|+ ..+...|.+.|.+.+
T Consensus 248 R~----~vL~~Vrkv--~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 248 RA----TVLKAVHKV--KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HH----HHHHHHGGG--CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HH----HHHHHHHHh--CcccCCCCCCcccccchHHHHHHHccCC
Confidence 64 444555544 3344544 445555666676655
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.84 E-value=1.2e-17 Score=140.97 Aligned_cols=287 Identities=14% Similarity=0.064 Sum_probs=224.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
+|++++|++.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+...|..+. +.|++.
T Consensus 12 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 489999999999998875 4566778888888999999999999999988753 44556666664 889999
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCchhh--------cCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPD-VVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 142 (325)
|+++.+.. +.+...|..+..++...|+..+ ....|+ ...+..+...+...|++++|.+.|+++.+.
T Consensus 90 ~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 164 (388)
T 1w3b_A 90 YRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET- 164 (388)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHcC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Confidence 99998864 4457789999999999998221 123454 556777888888999999999999999876
Q ss_pred CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHH----------
Q 048780 143 VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA-TTYNTLFM---------- 211 (325)
Q Consensus 143 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~---------- 211 (325)
.|+ +..+|..+...+.+.|++++|...|+++.+.+ |+. ..+..+-.
T Consensus 165 -~p~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 165 -QPN--------------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp -CTT--------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTH
T ss_pred -CCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHH
Confidence 343 45677777777888888888888888777643 222 22221111
Q ss_pred -------HhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 212 -------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 212 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
.....+.+..++..+...+...|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|...|+.+.+.
T Consensus 222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1111234578899999999999999999999999988653 26778999999999999999999999998743
Q ss_pred CCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 285 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
. +.+..+|..+...+.+.|++++|.+.++++.+.
T Consensus 301 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 301 C--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred C--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 557889999999999999999999999998764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=1.1e-17 Score=143.89 Aligned_cols=282 Identities=11% Similarity=0.050 Sum_probs=196.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
.|++++|+.+|+.+.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+. +.|.+.
T Consensus 39 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 477888888888877664 4567778888888888888888888888887763 22333444333 777788
Q ss_pred HHHHHHhcCCccCccH---HHHHHHHHH------------HHhcCchhh---------cCCCCChhhHHHHHHHHHccCc
Q 048780 72 FEEMVNEFGVICKPDV---VTCTNIIDG------------LCKDGFMMD---------QGMRPDVVTLNVMTDNLSKDGK 127 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~---~~~~~ll~~------------~~~~~~~~~---------~~~~~~~~~~~~ll~~~~~~g~ 127 (325)
|+++.+.. +.+. ..+..+... +...|+... ...+.+...+..+...|.+.|+
T Consensus 117 ~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 117 FKKVLKSN----PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC
Confidence 88777643 2233 455555333 444454110 0112355666677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 048780 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207 (325)
Q Consensus 128 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 207 (325)
+++|.++|+.+.+.. | .+..+|..+..+|...|++++|...|+++.+.. |+.....
T Consensus 193 ~~~A~~~~~~~~~~~--~--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 248 (450)
T 2y4t_A 193 PRKAISDLKAASKLK--N--------------------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCF 248 (450)
T ss_dssp GGGGHHHHHHHHHHH--C--------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHhC--C--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHH
Confidence 777777777766542 2 267789999999999999999999999998652 3222211
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-----IETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 208 ~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..+... .....+..+...|...|++++|...|+.+.+.. |+ ...|..+..++.+.|++++|...++.+.
T Consensus 249 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 249 AHYKQV----KKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 110000 001112333888999999999999999998753 33 4578899999999999999999999987
Q ss_pred hCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
... +.+...|..+..+|...|++++|.+.+++..+.
T Consensus 323 ~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 323 QME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 332 346789999999999999999999999998763
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.77 E-value=9.4e-16 Score=131.75 Aligned_cols=264 Identities=14% Similarity=0.059 Sum_probs=200.2
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHHHHHH
Q 048780 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVN 77 (325)
Q Consensus 7 A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~ 77 (325)
+...+....... +.+...|..+...+.+.|++++|..+|+++.+.. +.+...+..+. +.|+..|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444455555443 5678899999999999999999999999998762 33455555554 889999999988
Q ss_pred hcCCccCccHHHHHHHHHHHHhcCchhh--------cCCCCCh----hhHHHHH------------HHHHccCcHHHHHH
Q 048780 78 EFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPDV----VTLNVMT------------DNLSKDGKMEEANC 133 (325)
Q Consensus 78 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~~----~~~~~ll------------~~~~~~g~~~~a~~ 133 (325)
.. +.+...+..+..+|.+.|+..+ ....|+. ..+..+. ..+.+.|++++|++
T Consensus 89 ~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 89 LK----MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 75 4567888889999999888211 1234432 4555553 34888899999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 048780 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213 (325)
Q Consensus 134 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (325)
.|+.+.+.. |+ +...+..+..+|.+.|++++|.+.|+++.+..
T Consensus 165 ~~~~~~~~~--~~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 207 (450)
T 2y4t_A 165 FLDKILEVC--VW--------------------DAELRELRAECFIKEGEPRKAISDLKAASKLK--------------- 207 (450)
T ss_dssp HHHHHHHHC--TT--------------------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------------
T ss_pred HHHHHHHhC--CC--------------------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------
Confidence 999888752 32 67788899999999999999999999998752
Q ss_pred CCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHH------------HHHHHhcCChHHHHHHHHHH
Q 048780 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL------------IDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~ 281 (325)
+.+..+|..+...|...|++++|...|+.+..... .+...+..+ ...|.+.|++++|...|+.+
T Consensus 208 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 208 ---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp ---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44677888999999999999999999999986542 244455444 78999999999999999998
Q ss_pred hhCCCCCCc-----HHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 282 MQNPGLTPD-----VVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 282 ~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
... .|+ ...|..+...+.+.|++++|...++++.+.
T Consensus 284 l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 284 MKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred Hhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 743 344 457888899999999999999999998764
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.1e-15 Score=123.94 Aligned_cols=253 Identities=13% Similarity=-0.045 Sum_probs=170.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHH
Q 048780 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTC 90 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~ 90 (325)
+.+...+..+...+...|++++|.++|+++.+.. +.+...+..+. +.|...++++.+.. +.+...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~ 93 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY----PSNPVSW 93 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTSTHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHH
Confidence 5566677777777777788888888777776653 12222222221 67777777777654 3456667
Q ss_pred HHHHHHHHhcC-chh--------hcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 91 TNIIDGLCKDG-FMM--------DQGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 91 ~~ll~~~~~~~-~~~--------~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
..+...+...| +.. .....| +...|..+...+...|++++|.+.|+.+.+.. |+
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------------- 157 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KG-------------- 157 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TT--------------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cc--------------
Confidence 77777777777 411 112223 46677888888888888888888888877653 21
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
+...+..+...|...|++++|.+.+++..+.. +.+..++..+...+...|++++|.
T Consensus 158 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 158 ------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA------------------PEDPFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp ------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHcccHHHHH
Confidence 34455667777888888888888888877652 334566777788888888888888
Q ss_pred HHHHHHhhCC--------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHH
Q 048780 241 KVFSAIGNHK--------CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 241 ~~~~~m~~~~--------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (325)
..+++..+.. ...+..++..+...|...|++++|...++...+.. +.+...|..+...|.+.|++++|.+
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHH
Confidence 8887775421 12235677778888888888888888888776322 2355677777788888888888888
Q ss_pred HHHHHHH
Q 048780 313 LLLDMEE 319 (325)
Q Consensus 313 ~~~~m~~ 319 (325)
.+++..+
T Consensus 292 ~~~~al~ 298 (330)
T 3hym_B 292 YFHTALG 298 (330)
T ss_dssp HHHTTTT
T ss_pred HHHHHHc
Confidence 8877654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=2.4e-14 Score=118.88 Aligned_cols=281 Identities=11% Similarity=0.033 Sum_probs=206.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchhHHHHH---------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP-NVITFNTLA---------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~---------~~a~~ 70 (325)
.|++++|+..|+.+.+.. +.+...|..+...+.+.|++++|...|+++.+. .| +...+..+. +.|..
T Consensus 16 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHH
Confidence 589999999999998875 567889999999999999999999999999876 34 334444333 88999
Q ss_pred HHHHHHHhcCCccC---ccHHHHHHH------------HHHHHhcCchhh---------cCCCCChhhHHHHHHHHHccC
Q 048780 71 LFEEMVNEFGVICK---PDVVTCTNI------------IDGLCKDGFMMD---------QGMRPDVVTLNVMTDNLSKDG 126 (325)
Q Consensus 71 ~~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~---------~~~~~~~~~~~~ll~~~~~~g 126 (325)
.|+.+.+.. + .+...+..+ ...+...|+... ...+.+...+..+...+...|
T Consensus 93 ~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 93 DFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence 999988754 2 244444444 355666665111 112335677888888888889
Q ss_pred cHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-
Q 048780 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT- 205 (325)
Q Consensus 127 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~- 205 (325)
++++|.+.++...+. .|+ +...+..+...+...|++++|.+.|+...+.. |+...
T Consensus 169 ~~~~A~~~~~~~~~~--~~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~ 224 (359)
T 3ieg_A 169 EPRKAISDLKAASKL--KSD--------------------NTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRC 224 (359)
T ss_dssp CHHHHHHHHHHHHTT--CSC--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred CHHHHHHHHHHHHHh--CCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHH
Confidence 999999888888765 232 66788889999999999999999999998753 22111
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI----ETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 206 ~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
+..+... ........+...+.+.|++++|...++...+.... +. ..+..+...+.+.|++++|...++..
T Consensus 225 ~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 225 FAHYKQV-----KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1100000 01111223467789999999999999998775422 23 33556778999999999999999998
Q ss_pred hhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 282 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+.. +.+..+|..+...|...|++++|.+.+++..+.
T Consensus 299 ~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 299 LQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7432 336788999999999999999999999998764
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.4e-15 Score=129.07 Aligned_cols=257 Identities=10% Similarity=-0.109 Sum_probs=154.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
+|++++|+..|+.+...+ |+...|..+..+|.+.|++++|...|+++.+.. +.+...+..+. +.|...
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 589999999999999875 789999999999999999999999999998863 22334444443 888888
Q ss_pred HHHHHHhcCCcc--------------------------------------------------------------------
Q 048780 72 FEEMVNEFGVIC-------------------------------------------------------------------- 83 (325)
Q Consensus 72 ~~~~~~~~~~~~-------------------------------------------------------------------- 83 (325)
|+.+.+......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 888876541000
Q ss_pred -------CccHHHHHHHHHHHHh---cCc----------hhh-----cC-C-------CCChhhHHHHHHHHHccCcHHH
Q 048780 84 -------KPDVVTCTNIIDGLCK---DGF----------MMD-----QG-M-------RPDVVTLNVMTDNLSKDGKMEE 130 (325)
Q Consensus 84 -------~~~~~~~~~ll~~~~~---~~~----------~~~-----~~-~-------~~~~~~~~~ll~~~~~~g~~~~ 130 (325)
+.+...+......+.. .|+ ... .. . +.+...+..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 0002222222222222 343 111 00 0 2245677778888888888999
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHh-------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048780 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAW-------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197 (325)
Q Consensus 131 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (325)
|.+.|+.+.+.. |+...+..+...+.. .-...+.+...+..+...|...|++++|...|++..+.
T Consensus 256 A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (514)
T 2gw1_A 256 AHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 998888888764 334445555554443 11122335667888888888888888888888888765
Q ss_pred CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 048780 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277 (325)
Q Consensus 198 g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 277 (325)
.. .+..++..+...+...|++++|...++.+.+... .+..++..+...|...|++++|...
T Consensus 334 ~~------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 334 DP------------------ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp CS------------------SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred Ch------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 31 1233344444444444444444444444433221 1233444444444444444444444
Q ss_pred HHHH
Q 048780 278 FHML 281 (325)
Q Consensus 278 ~~~~ 281 (325)
++.+
T Consensus 395 ~~~a 398 (514)
T 2gw1_A 395 YDLA 398 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.5e-15 Score=126.90 Aligned_cols=254 Identities=11% Similarity=0.017 Sum_probs=165.1
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~ 72 (325)
|++++|+.+|+.+.... +.+..+|..+...|.+.|++++|...|++..+.. +.+...+..+. +.|.+.|
T Consensus 79 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEAL 156 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHH
Confidence 45555666666555543 3345555555666666666666666665555432 11222332222 4445555
Q ss_pred HHHHHhcCCccCccH-HHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHH
Q 048780 73 EEMVNEFGVICKPDV-VTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 151 (325)
+++.+.. |+. ..+..+ ......+..+...+.+.|++++|.+.|+++.+.. |+
T Consensus 157 ~~al~~~-----p~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~----- 209 (365)
T 4eqf_A 157 KNWIKQN-----PKYKYLVKNK---------------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GD----- 209 (365)
T ss_dssp HHHHHHC-----HHHHCC----------------------------------CCHHHHHHHHHHHHHHHHS--CS-----
T ss_pred HHHHHhC-----ccchHHHhhh---------------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cC-----
Confidence 5444432 111 000000 0123345566888999999999999999998863 21
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHH
Q 048780 152 TLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231 (325)
Q Consensus 152 ~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~ 231 (325)
..+..++..+...|...|++++|.+.|++..+.. +.+..+|..+..+|.
T Consensus 210 -------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 210 -------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR------------------PEDYSLWNRLGATLA 258 (365)
T ss_dssp -------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHH
T ss_pred -------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHH
Confidence 1156778889999999999999999999998762 446778899999999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC----C------CCCcHHhHHHHHHHH
Q 048780 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP----G------LTPDVVTYNIMIHGF 301 (325)
Q Consensus 232 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~------~~p~~~~~~~li~~~ 301 (325)
..|++++|...|++..+.. +.+..++..+..+|.+.|++++|...|+...... + ...+...|..+..++
T Consensus 259 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 9999999999999988764 2358899999999999999999999999876321 0 011367899999999
Q ss_pred HccCChHHHHHHHHH
Q 048780 302 CKEGQHQKANGLLLD 316 (325)
Q Consensus 302 ~~~g~~~~a~~~~~~ 316 (325)
...|+.+.+..+.++
T Consensus 338 ~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 338 SLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHh
Confidence 999999998887664
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=4.4e-15 Score=121.83 Aligned_cols=257 Identities=11% Similarity=0.056 Sum_probs=181.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
+|++++|+.+|+.+.+.. +.+...|..+...+.+.|++++|...|+++.+.. +.+...+..+. +.|.+.
T Consensus 34 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467788888888877764 4466777778888888888888888888877652 22333333332 566666
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHH--HHHccCcHHHHHHHHHHHHHCCCCCCccc
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD--NLSKDGKMEEANCLLEVMIQRDVNPNTCT 149 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 149 (325)
++++.+.. +.+...+..+... .|+......+.. .+...|++++|.+.++++.+.. |+
T Consensus 112 ~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~--- 170 (327)
T 3cv0_A 112 LRAWLLSQ----PQYEQLGSVNLQA------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PN--- 170 (327)
T ss_dssp HHHHHHTS----TTTTTC--------------------------------CCTTSHHHHHHHHHHHHHHHHHS--TT---
T ss_pred HHHHHHhC----CccHHHHHHHhHH------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CC---
Confidence 66666543 1111111111100 111111112213 3778899999999999998763 22
Q ss_pred HHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHH
Q 048780 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229 (325)
Q Consensus 150 ~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~ 229 (325)
+...+..+...|...|++++|.+.+++..+.. +.+..++..+...
T Consensus 171 -----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 171 -----------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELR------------------PDDAQLWNKLGAT 215 (327)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHH
Confidence 56788889999999999999999999998752 3456778888999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----------cHHhHHHHH
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-----------DVVTYNIMI 298 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li 298 (325)
+...|++++|.+.+++..+.. +.+..++..+...|...|++++|.+.++...... -.. +...|..+.
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHH
Confidence 999999999999999987764 2367889999999999999999999999876321 110 477899999
Q ss_pred HHHHccCChHHHHHHHHHH
Q 048780 299 HGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m 317 (325)
.++.+.|++++|..++++.
T Consensus 294 ~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHTTCC
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 9999999999999988654
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=4.5e-15 Score=124.03 Aligned_cols=271 Identities=12% Similarity=0.010 Sum_probs=191.3
Q ss_pred CCcchHHH-HHHHHHhcC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHH
Q 048780 2 GRASGGFV-LLGRILMSC---FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVA 68 (325)
Q Consensus 2 g~~~~A~~-l~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a 68 (325)
|++++|++ .|+...... ...+...+..+...+.+.|++++|...|+++.+.. +.+...+..+. +.|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 66777777 777554432 11245667778888888888888888888887653 22333444332 778
Q ss_pred HHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhh--------cCCCCC-hhhHHH---------------HHHHHHc
Q 048780 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPD-VVTLNV---------------MTDNLSK 124 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~-~~~~~~---------------ll~~~~~ 124 (325)
.+.|+++.+.. +.+..++..+...+...|+... ....|+ ...+.. .+..+..
T Consensus 118 ~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 118 ISALRRCLELK----PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888877764 4467778888888888777111 011121 111111 2344448
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 048780 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204 (325)
Q Consensus 125 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 204 (325)
.|++++|.+.|+.+.+.. |+ .++..++..+...|.+.|++++|...|++..+..
T Consensus 194 ~~~~~~A~~~~~~a~~~~--p~------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 247 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLD--PT------------------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------ 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHS--TT------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cccHHHHHHHHHHHHHhC--cC------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 899999999999998763 21 1146778889999999999999999999998752
Q ss_pred hHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 205 ~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
+.+..+|..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|...|+.....
T Consensus 248 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 248 ------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3456788888999999999999999999987764 346789999999999999999999999987632
Q ss_pred CCC---------CCcHHhHHHHHHHHHccCChHHHHHHHHH
Q 048780 285 PGL---------TPDVVTYNIMIHGFCKEGQHQKANGLLLD 316 (325)
Q Consensus 285 ~~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (325)
..- .....+|..+..+|...|++++|..++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 100 11267899999999999999999988764
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.4e-13 Score=112.94 Aligned_cols=210 Identities=10% Similarity=-0.140 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhh--------c-CCCCChhhHHHHHHHHHccC-cHHHHHHHH
Q 048780 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------Q-GMRPDVVTLNVMTDNLSKDG-KMEEANCLL 135 (325)
Q Consensus 66 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~-~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~ 135 (325)
+.|.++|+++.+.. +.+...+..+...+...|+..+ . ..+.+...|..+...+...| ++++|.+.|
T Consensus 39 ~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 114 (330)
T 3hym_B 39 KMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114 (330)
T ss_dssp HHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 88999999998875 4456667777788888887111 1 12335778888999999999 999999999
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCC
Q 048780 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215 (325)
Q Consensus 136 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (325)
+...+.. |+ +...|..+...+...|++++|.+.|++..+..
T Consensus 115 ~~a~~~~--~~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------- 155 (330)
T 3hym_B 115 SKATTLE--KT--------------------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----------------- 155 (330)
T ss_dssp HHHHTTC--TT--------------------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHhC--Cc--------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----------------
Confidence 9988753 32 56678889999999999999999999998763
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-------CCC
Q 048780 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-------GLT 288 (325)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~ 288 (325)
+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...... ...
T Consensus 156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 156 -KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred -cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence 3345667778999999999999999999998765 3367899999999999999999999999876321 113
Q ss_pred CcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+..+|..+...|...|++++|...+++..+.
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 34578899999999999999999999998764
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.1e-14 Score=121.97 Aligned_cols=297 Identities=10% Similarity=-0.061 Sum_probs=218.9
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh--------------------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT-------------------- 60 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-------------------- 60 (325)
+|++++|+..|+.+.+.+ +.+..+|..+...+.+.|++++|...|+++.+.+- ++...
T Consensus 52 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (514)
T 2gw1_A 52 VGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEK 129 (514)
T ss_dssp HTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999998876 56778999999999999999999999999876542 11110
Q ss_pred -----------------------------------------------------------HH--H----------HHHHHH
Q 048780 61 -----------------------------------------------------------FN--T----------LALVAL 69 (325)
Q Consensus 61 -----------------------------------------------------------~~--~----------l~~~a~ 69 (325)
+. . -.+.|.
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp ---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred HHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 00 0 016677
Q ss_pred HHHHHHHH-----h--cCCc---cCccHHHHHHHHHHHHhcCchhh--------cCCCCChhhHHHHHHHHHccCcHHHH
Q 048780 70 NLFEEMVN-----E--FGVI---CKPDVVTCTNIIDGLCKDGFMMD--------QGMRPDVVTLNVMTDNLSKDGKMEEA 131 (325)
Q Consensus 70 ~~~~~~~~-----~--~~~~---~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~g~~~~a 131 (325)
..|+++.+ . .... .+.+...+..+...+...|+... ....|+...+..+...+...|++++|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHH
Confidence 77877776 2 1000 02345677788888888887111 11233477788888888899999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHh-------------hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048780 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAW-------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198 (325)
Q Consensus 132 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 198 (325)
.+.++.+.+... .+...+..+...+.. .-...+.+...+..+...|...|++++|...++.+.+..
T Consensus 290 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 290 YNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp GGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 999988876532 234445555544443 111223356788899999999999999999999998752
Q ss_pred CCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-cC----HHHHHHHHHHHHh---cCC
Q 048780 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV-LT----IETCNCLIDGLCK---IGR 270 (325)
Q Consensus 199 ~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~---~g~ 270 (325)
+.+..++..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|+
T Consensus 369 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 369 ------------------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp ------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred ------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 335677888899999999999999999988664311 11 3488999999999 999
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+++|...++...... +.+..++..+...|.+.|++++|...+++..+.
T Consensus 431 ~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 431 FIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999987432 335778889999999999999999999998764
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=2.7e-14 Score=119.32 Aligned_cols=277 Identities=12% Similarity=-0.023 Sum_probs=176.2
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHHHhcCC-CC--CchhHHHHH---------HHHH
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCC-DP--NVITFNTLA---------LVAL 69 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~-~~~~m~~~g~-~~--~~~~~~~l~---------~~a~ 69 (325)
.++.+...|+.+.+.+ |+ .+...|++++|.+ .|++..+..- .| +...+..+- +.|.
T Consensus 16 ~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 84 (368)
T 1fch_A 16 FWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84 (368)
T ss_dssp -----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHH
Confidence 3555666666665543 22 2344588999998 8887654321 11 233333332 8999
Q ss_pred HHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhc--------C-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 048780 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ--------G-MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140 (325)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~--------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 140 (325)
..|+++.+.. +.+...+..+..++...|+.... . .+.+..++..+...+...|++++|.+.|+.+..
T Consensus 85 ~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 85 LLFEAAVQQD----PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHSC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999864 55788899999999999982111 1 234678899999999999999999999999988
Q ss_pred CCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCCh
Q 048780 141 RDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220 (325)
Q Consensus 141 ~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 220 (325)
.. |+............ .... ....+. .+..+...|++++|...|+++.+.. |+ .++.
T Consensus 161 ~~--~~~~~~~~~~~~~~---~~~~-~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~--p~--------------~~~~ 217 (368)
T 1fch_A 161 YT--PAYAHLVTPAEEGA---GGAG-LGPSKR-ILGSLLSDSLFLEVKELFLAAVRLD--PT--------------SIDP 217 (368)
T ss_dssp TS--TTTGGGCC-------------------C-TTHHHHHHHHHHHHHHHHHHHHHHS--TT--------------SCCH
T ss_pred hC--cCcHHHHHHHHHHh---hhhc-ccHHHH-HHHHHhhcccHHHHHHHHHHHHHhC--cC--------------cccH
Confidence 64 22111000000000 0000 000111 2333448899999999999998752 11 1146
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
.++..+...+...|++++|...+++..+.. +.+..+|..+...|...|++++|...|+...... +.+...+..+...
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~ 294 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 778888999999999999999999988764 3367899999999999999999999999987432 3457889999999
Q ss_pred HHccCChHHHHHHHHHHHHc
Q 048780 301 FCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~~ 320 (325)
|.+.|++++|...+++..+.
T Consensus 295 ~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 295 CINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=4.1e-14 Score=118.22 Aligned_cols=238 Identities=11% Similarity=-0.009 Sum_probs=173.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHH
Q 048780 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTN 92 (325)
Q Consensus 22 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
+...|..+...+.+.|++++|...|+++.+.. +.+...|..+. +.|++.|+++.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------------- 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------
Confidence 45568999999999999999999999998763 22333444333 66666666666543
Q ss_pred HHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHH
Q 048780 93 IIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN 172 (325)
Q Consensus 93 ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 172 (325)
+.+...|..+...|...|++++|++.|+++.+.. |+.......+ ......+.
T Consensus 130 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~----------~~~~~~~~ 181 (365)
T 4eqf_A 130 ----------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK----------KGSPGLTR 181 (365)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----------------------
T ss_pred ----------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhh----------ccchHHHH
Confidence 2346678888999999999999999999998753 2110000000 00233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 048780 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252 (325)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 252 (325)
.+...+...|++++|.+.|+++.+.. |+ ..+..++..+...+...|++++|.+.+++..+.. +
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 244 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQN--GD--------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-P 244 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHS--CS--------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhC--cC--------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 56889999999999999999998863 11 1156778888999999999999999999998765 3
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 253 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+..+|..+..+|...|++++|...|+...+.. +.+..+|..+..+|.+.|++++|...+++..+.
T Consensus 245 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 245 EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 368899999999999999999999999987432 335788999999999999999999999998753
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.65 E-value=1.8e-13 Score=120.18 Aligned_cols=291 Identities=8% Similarity=-0.058 Sum_probs=176.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
+|++++|+..|+.+.... +.+...|..+...|.+.|++++|.+.|+++.+.. +.+...+..+. +.|...
T Consensus 38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 589999999999998876 5678899999999999999999999999998763 22333433332 677777
Q ss_pred HHHHHHhcCC---------------------------------ccCccHHHHHHHHHHHHhcCc------hhhcC--CCC
Q 048780 72 FEEMVNEFGV---------------------------------ICKPDVVTCTNIIDGLCKDGF------MMDQG--MRP 110 (325)
Q Consensus 72 ~~~~~~~~~~---------------------------------~~~~~~~~~~~ll~~~~~~~~------~~~~~--~~~ 110 (325)
|+.+...... ...|+...... +..... ..... ..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHHHHhhcccccc
Confidence 7533211100 00011111100 000000 00000 000
Q ss_pred Chh-hHHHHHHHHHcc--------CcHHHHHHHHHHHHHCCCCCCcc-cHHHHHH-------HHHh------------hc
Q 048780 111 DVV-TLNVMTDNLSKD--------GKMEEANCLLEVMIQRDVNPNTC-TYNTLMD-------GFAW------------WS 161 (325)
Q Consensus 111 ~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~-------~~~~------------~~ 161 (325)
... ....+...+... |++++|.++|+.+.+. .|+.. .+..+.. .+.. ..
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 000 111111111111 2455555555555543 22211 0100000 0000 00
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 048780 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241 (325)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (325)
....|+...+..+...+...|++++|.+.|++..+. .+.+..+|..+...+...|++++|.+
T Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 270 INLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL------------------NPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc------------------CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 001123455666666777777777777777777654 23456788888999999999999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 242 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.++...+.... +...+..+...|...|++++|...++.+.... +.+...+..+...+...|++++|.+.+++..+.
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999876532 56788999999999999999999999987432 345678889999999999999999999998653
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=5.3e-14 Score=113.62 Aligned_cols=242 Identities=12% Similarity=0.049 Sum_probs=130.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~ 71 (325)
.|+++.|+..++................+.+.|...|+++.|+..++.. -.|+..++..+. +.|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4888999998887654431222345666789999999999999866541 233333333332 666777
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHH
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 151 (325)
++++.... ..|+ +...+..+...+.+.|++++|++.++. |+
T Consensus 88 l~~ll~~~---~~P~------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~----- 128 (291)
T 3mkr_A 88 LDREMSRS---VDVT------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ-------GD----- 128 (291)
T ss_dssp HHHHHHSC---CCCS------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC-----
T ss_pred HHHHHhcc---cCCC------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC-----
Confidence 77766543 2232 222333344555555666666665554 21
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHH
Q 048780 152 TLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231 (325)
Q Consensus 152 ~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~ 231 (325)
+...+..+...+.+.|++++|.+.|+.+.+.. |+.... ......+..+.
T Consensus 129 ---------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~--------------~l~~a~~~l~~ 177 (291)
T 3mkr_A 129 ---------------SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLT--------------QLATAWVSLAA 177 (291)
T ss_dssp ---------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH--------------HHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHH--------------HHHHHHHHHHh
Confidence 44455555566666666666666666665542 211000 00011122223
Q ss_pred HcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHH-H
Q 048780 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK-A 310 (325)
Q Consensus 232 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a 310 (325)
..|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..... +-+..++..++..+...|+.++ +
T Consensus 178 ~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp CTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3455666666666665542 3355556666666666666666666666554222 2244455555555555665543 3
Q ss_pred HHHHHHHHH
Q 048780 311 NGLLLDMEE 319 (325)
Q Consensus 311 ~~~~~~m~~ 319 (325)
.++++++.+
T Consensus 255 ~~~~~~~~~ 263 (291)
T 3mkr_A 255 NRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555543
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.62 E-value=2.8e-12 Score=106.35 Aligned_cols=253 Identities=13% Similarity=0.038 Sum_probs=191.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHH
Q 048780 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTN 92 (325)
Q Consensus 22 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
++..+..+...+.+.|++++|...|+++.+.. +.+...+..+. +.|...|+++.+.. +.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcchHHHH
Confidence 45678888999999999999999999998763 22344444333 88999999998864 446788888
Q ss_pred HHHHHHhcCchh--------hcCCCC----ChhhHHHH------------HHHHHccCcHHHHHHHHHHHHHCCCCCCcc
Q 048780 93 IIDGLCKDGFMM--------DQGMRP----DVVTLNVM------------TDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148 (325)
Q Consensus 93 ll~~~~~~~~~~--------~~~~~~----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 148 (325)
+...+...|+.. .....| +...+..+ ...+...|++++|.+.++.+.+.. |+
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-- 152 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VW-- 152 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC--
Confidence 889998888821 123344 33344444 478888999999999999988763 32
Q ss_pred cHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHH
Q 048780 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228 (325)
Q Consensus 149 ~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~ 228 (325)
+...+..+..++...|++++|...+++..+.. +.+..++..+..
T Consensus 153 ------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~ 196 (359)
T 3ieg_A 153 ------------------DAELRELRAECFIKEGEPRKAISDLKAASKLK------------------SDNTEAFYKIST 196 (359)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------SCCHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHH
Confidence 56778889999999999999999999998752 446677888899
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCcCHHHHH------------HHHHHHHhcCChHHHHHHHHHHhhCCCCCCcH--HhH
Q 048780 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCN------------CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV--VTY 294 (325)
Q Consensus 229 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~ 294 (325)
.+...|++++|.+.++...+.... +...+. .+...+.+.|++++|...++.......-.+.. ..+
T Consensus 197 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 275 (359)
T 3ieg_A 197 LYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK 275 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 999999999999999998775422 333333 23667889999999999999987433211111 235
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 295 NIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 295 ~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..+...+...|++++|.+.+++..+.
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55778899999999999999998775
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.62 E-value=9.2e-13 Score=115.66 Aligned_cols=245 Identities=13% Similarity=0.025 Sum_probs=174.1
Q ss_pred CCcchHHHHHHHHHhcCCCCc-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------
Q 048780 2 GRASGGFVLLGRILMSCFTPN-------MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------- 65 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~--------- 65 (325)
|++++|+.+|+.+.+.. +.+ ..+|..+...+...|++++|...|++..+. .|+...+..+.
T Consensus 216 ~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 46889999999998774 222 235777778889999999999999999886 45544444443
Q ss_pred HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 048780 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145 (325)
Q Consensus 66 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 145 (325)
+.|.+.|+++.+.. +.+..+|..+...+...|++++|.+.|+...+.. |
T Consensus 293 ~~A~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~ 341 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-----------------------------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--P 341 (537)
T ss_dssp HHHHHHHHHHHHHC-----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHhccC-----------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--C
Confidence 78888888887754 2244566777777888888888888888877652 2
Q ss_pred CcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHH
Q 048780 146 NTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225 (325)
Q Consensus 146 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~ 225 (325)
+ +...|..+..+|...|++++|.+.+++..+.. +.+..++..
T Consensus 342 ~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------~~~~~~~~~ 383 (537)
T 3fp2_A 342 E--------------------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF------------------PTLPEVPTF 383 (537)
T ss_dssp T--------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCTHHHHH
T ss_pred C--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCChHHHHH
Confidence 2 45567777888888888888888888887652 334566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHhc----------CChHHHHHHHHHHhhCCCCCCc
Q 048780 226 YIDGLYKNGFVLEAMKVFSAIGNHK-----CVLTIETCNCLIDGLCKI----------GRLKIAWDIFHMLMQNPGLTPD 290 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~ 290 (325)
+...+...|++++|.+.++.+.+.. .......+......+... |++++|...|+...... +.+
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~ 461 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRS 461 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCC
Confidence 7888888888888888887775432 111122234444566666 88888888888776332 335
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
...+..+...|.+.|++++|.+.+++..+.
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 677778888888888888888888877654
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2.7e-13 Score=104.64 Aligned_cols=200 Identities=17% Similarity=0.047 Sum_probs=155.2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHh
Q 048780 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK 99 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 99 (325)
+++...+..+...+.+.|++++|...|++..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------- 35 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN---------------------------------------------- 35 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------------------
Confidence 5677889999999999999999999999988531
Q ss_pred cCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 048780 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179 (325)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~ 179 (325)
+.+...+..+...+.+.|++++|+..|++..+. .|+ +...+..+..++.
T Consensus 36 ---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~--------------------~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 36 ---------PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR--------------------YLGGYMVLSEAYV 84 (217)
T ss_dssp ---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------cHHHHHHHHHHHH
Confidence 123456677778889999999999999999876 343 5667788888888
Q ss_pred hc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 180 KD-----------RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 180 ~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
.. |++++|...|++..+.. +.+..+|..+...+...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVN------------------PRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhC------------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 88 99999999999998852 34567788889999999999999999999988
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 249 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
.. .+...+..+..+|...|++++|...|+...+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus 147 ~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 147 LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77 688999999999999999999999999987432 3357788889999999999999999988754
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5e-13 Score=105.64 Aligned_cols=158 Identities=10% Similarity=-0.003 Sum_probs=127.3
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...|..+...+.+.|++++|.+.|+...+.. | + ...+...|++++|...+
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~---------------------~-------~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--R---------------------T-------ADILTKLRNAEKELKKA 128 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C---------------------C-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--c---------------------h-------hHHHHHHhHHHHHHHHH
Confidence 3567788889999999999999999988752 2 1 13466778899999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCh
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 271 (325)
+...... +.+...+..+...+...|++++|...++...+... .+..+|..+...|...|++
T Consensus 129 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 189 (258)
T 3uq3_A 129 EAEAYVN------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSF 189 (258)
T ss_dssp HHHHHCC------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcC------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCH
Confidence 9988752 22456677888999999999999999999877653 3678899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 272 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
++|...++...+.. +.+...|..+...+.+.|++++|.+.+++..+.
T Consensus 190 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 190 PEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999887432 335778888899999999999999999887654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=1.3e-12 Score=107.11 Aligned_cols=239 Identities=11% Similarity=-0.011 Sum_probs=174.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHH
Q 048780 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTN 92 (325)
Q Consensus 22 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+. +.|.+.++++.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------- 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------
Confidence 55677888899999999999999999998763 22333333332 66666666666543
Q ss_pred HHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHH
Q 048780 93 IIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN 172 (325)
Q Consensus 93 ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 172 (325)
+.+...+..+...+...|++++|.+.++.+.+..... ...+..+...+ ++.....
T Consensus 86 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~ 140 (327)
T 3cv0_A 86 ----------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY-EQLGSVNLQAD--------VDIDDLN 140 (327)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-TTC-----------------------
T ss_pred ----------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHH--------HHHHHHH
Confidence 2345677888889999999999999999998763221 11111110000 0111111
Q ss_pred HH-HH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 173 IL-IN-GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 173 ~l-i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
.+ .. .+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 202 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN------------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11 22 3778899999999999998762 3356778888999999999999999999988765
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 251 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+.+..++..+...+...|++++|...++...+.. +.+...|..+...|...|++++|.+.+++..+.
T Consensus 203 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 203 -PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3367889999999999999999999999987432 345788999999999999999999999988754
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=2.2e-12 Score=101.82 Aligned_cols=202 Identities=12% Similarity=-0.005 Sum_probs=158.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
...|..+...+...|++++|...|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------------------- 67 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------------------- 67 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------------------------------------------
Confidence 6778889999999999999999999987641
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (325)
+.+...+..+...+...|++++|.+.|+++.+.. |+ +...+..+...|...|
T Consensus 68 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 68 ------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SR--------------------NARVLNNYGGFLYEQK 119 (252)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHHTT
T ss_pred ------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cC--------------------cHHHHHHHHHHHHHHh
Confidence 1133456667778888899999999999888763 22 5567778888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
++++|.++|+++.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 120 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 182 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLY----------------PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA 182 (252)
T ss_dssp CHHHHHHHHHHHTTCTTC----------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccC----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 999999999988772222 2245567777888899999999999998887654 23577888888
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..|...|++++|...++...... +.+...+..+...+...|++++|.++++++.+.
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999999999999887322 345677888888888999999999999888764
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=6.1e-14 Score=116.75 Aligned_cols=256 Identities=12% Similarity=0.124 Sum_probs=79.2
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~ 72 (325)
|++++|.+.++.+. .| .+|..|..++.+.|++++|.+.|.+. +|..+|..+. ++|++.+
T Consensus 17 ~~ld~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 67899999999984 23 59999999999999999999999763 4666776666 6677766
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCch---hhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCccc
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 149 (325)
+..++. .+++.+.+.++.+|.+.|+. .+.--.|+..+|..+...|...|.+++|...|..+
T Consensus 85 ~~ark~-----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------- 148 (449)
T 1b89_A 85 QMARKK-----ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT-----------
T ss_pred HHHHHh-----CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------
Confidence 655553 34578899999999999982 22223577789999999999999999999999865
Q ss_pred HHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhC-------------CC
Q 048780 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN-------------NV 216 (325)
Q Consensus 150 ~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-------------~~ 216 (325)
..|..+..++.+.|++++|.+.+.++. ++.+|..+...+. .+
T Consensus 149 -------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L 203 (449)
T 1b89_A 149 -------------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI 203 (449)
T ss_dssp -------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred -------------------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 246667777777777777777776661 2333333221000 01
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC------c
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP------D 290 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p------~ 290 (325)
..+..-...++..|.+.|++++|..+++...... .-....|+-|--+|++- ++++..+.++.....-+++| +
T Consensus 204 ~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~ 281 (449)
T 1b89_A 204 VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQ 281 (449)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1112222334555555555555555555554433 22344555554455443 22333333322222233333 3
Q ss_pred HHhHHHHHHHHHccCChHHHHH
Q 048780 291 VVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~ 312 (325)
...|..+...|...++++.|..
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHH
Confidence 4556666666666666666654
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=2.4e-12 Score=101.51 Aligned_cols=185 Identities=16% Similarity=0.000 Sum_probs=150.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCchh---hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMV---TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVN 77 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~ 77 (325)
.|++++|+..|+.+... ++. .|..+...+.+.|++++|.+.|+++.+..
T Consensus 50 ~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------------------ 101 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------------------------ 101 (252)
T ss_dssp TTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred cCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------------
Confidence 47889999999998853 564 46677788889999999999998887531
Q ss_pred hcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048780 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157 (325)
Q Consensus 78 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 157 (325)
+.+...+..+...|...|++++|.++|+.+.+.+..|+
T Consensus 102 -------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----------- 139 (252)
T 2ho1_A 102 -------------------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE----------- 139 (252)
T ss_dssp -------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT-----------
T ss_pred -------------------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc-----------
Confidence 12455788889999999999999999999877333342
Q ss_pred HhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHH
Q 048780 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237 (325)
Q Consensus 158 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (325)
+...+..+...+...|++++|.+.|++..+.. +.+..++..+...+...|+++
T Consensus 140 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 140 ---------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------------------RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SCCHHHHHHHHHHHHHTTCHH
T ss_pred ---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------cccHHHHHHHHHHHHHcCCHH
Confidence 56788888899999999999999999988752 345778899999999999999
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 238 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
+|...++...+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999987754 34677888888999999999999999998874
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=3e-12 Score=98.93 Aligned_cols=205 Identities=10% Similarity=-0.083 Sum_probs=145.3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHh
Q 048780 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK 99 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 99 (325)
+.+...|..+...+.+.|++++|...|++..+.. |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~------------------------------------------- 39 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P------------------------------------------- 39 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c-------------------------------------------
Confidence 3456778889999999999999999999987641 1
Q ss_pred cCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 048780 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179 (325)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~ 179 (325)
.+...|..+...+...|++++|.+.++.+.+.. |+ +...+..+...+.
T Consensus 40 ----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 40 ----------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PD--------------------SAEINNNYGWFLC 87 (225)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHH
T ss_pred ----------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC--------------------ChHHHHHHHHHHH
Confidence 123345566667777788888888888777652 22 4556777777788
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 048780 180 KD-RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258 (325)
Q Consensus 180 ~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 258 (325)
.. |++++|...++++.+.+.. +.+..++..+...+...|++++|...++++.+... .+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 150 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTY----------------PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAF 150 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTC----------------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCC----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHH
Confidence 88 8888888888887762111 22345566677778888888888888877766542 256677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLT-PDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..+...+...|++++|...++...... + .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777888888888888888887776322 2 35566667777777888888888887777643
No 32
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=6.9e-12 Score=96.88 Aligned_cols=198 Identities=12% Similarity=-0.043 Sum_probs=164.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|+..|+...+.. +.+...|..+...+...|++++|.+.|++..+..
T Consensus 21 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------------- 72 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--------------------------- 72 (225)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred HhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------------------------
Confidence 488999999999998875 6678899999999999999999999999987531
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHcc-CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD-GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 159 (325)
+.+...+..+...+... |++++|.+.++.+.+.+..|+
T Consensus 73 ----------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------- 111 (225)
T 2vq2_A 73 ----------------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT------------- 111 (225)
T ss_dssp ----------------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC-------------
T ss_pred ----------------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc-------------
Confidence 22456789999999999 999999999999988333332
Q ss_pred hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHH
Q 048780 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239 (325)
Q Consensus 160 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (325)
+...+..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|
T Consensus 112 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 112 -------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ------------------PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred -------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCchHHHHHHHHHHHcCCHHHH
Confidence 56789999999999999999999999998752 34578899999999999999999
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 240 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
...++...+.....+...+..+...+...|+.+.+..+++.+... .|+.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~ 219 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN---FPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHH
Confidence 999999877653247778888888999999999999999988632 45444433
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.7e-12 Score=102.44 Aligned_cols=226 Identities=10% Similarity=0.020 Sum_probs=168.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|+..|+...+.. +.+...+..+...|.+.|++++|...|++..+.+ ++.
T Consensus 16 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~---------------------- 70 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NAT---------------------- 70 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTT----------------------
T ss_pred hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--Cch----------------------
Confidence 477888888888887764 3455678888888888888888888888877521 110
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
......|..+...+...|++++|++.|+...+.. |+
T Consensus 71 ----------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~-------------- 106 (272)
T 3u4t_A 71 ----------------------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TT-------------- 106 (272)
T ss_dssp ----------------------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT--------------
T ss_pred ----------------------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cc--------------
Confidence 1123346778888999999999999999988752 32
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
+...|..+...|...|++++|.+.|++..+.. +.+..+|..+...+...+++++|.
T Consensus 107 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 107 ------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------------------TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp ------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------------------CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------------------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55678889999999999999999999887651 334556666663444556999999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhCCCCCCc------HHhHHHHHHHHHccCChHHHH
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGR---LKIAWDIFHMLMQNPGLTPD------VVTYNIMIHGFCKEGQHQKAN 311 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~a~ 311 (325)
+.|+...+... .+...+..+...+...|+ +++|...++...+...-.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999887652 246778888888888888 77788888777633222343 257778888999999999999
Q ss_pred HHHHHHHHc
Q 048780 312 GLLLDMEET 320 (325)
Q Consensus 312 ~~~~~m~~~ 320 (325)
+.+++..+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=1.5e-12 Score=104.09 Aligned_cols=237 Identities=14% Similarity=-0.015 Sum_probs=156.7
Q ss_pred CCCcchHHHHHHHHHhcCC---CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHH
Q 048780 1 MGRASGGFVLLGRILMSCF---TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVA 68 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a 68 (325)
.|++++|+..|+.+.+... +.+..+|..+...+...|++++|...|++..+.. +.+...+..+. +.|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3678999999999998632 2256789999999999999999999999998763 22333433332 556
Q ss_pred HHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcc
Q 048780 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 148 (325)
.+.|++..+.. +.+...+..+...|.+.|++++|.+.|+.+.+.. |+
T Consensus 97 ~~~~~~al~~~-----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~-- 143 (275)
T 1xnf_A 97 YEAFDSVLELD-----------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PN-- 143 (275)
T ss_dssp HHHHHHHHHHC-----------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--
T ss_pred HHHHHHHHhcC-----------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC--
Confidence 66666555543 2245567777778888888888888888887652 32
Q ss_pred cHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHH
Q 048780 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228 (325)
Q Consensus 149 ~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~ 228 (325)
.......+..+...|++++|...+....... +++...+ .+..
T Consensus 144 -------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~-~~~~ 185 (275)
T 1xnf_A 144 -------------------DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS------------------DKEQWGW-NIVE 185 (275)
T ss_dssp -------------------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS------------------CCCSTHH-HHHH
T ss_pred -------------------ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------CcchHHH-HHHH
Confidence 1122233334456688888888887766542 2222233 2566
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 229 GLYKNGFVLEAMKVFSAIGNHKCVL---TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 229 ~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
.+...++.++|.+.++......... +..++..+...|.+.|++++|...|+... .. .|+. +.....++...|
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~--~~~~~~~~~~l~ 260 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV-AN--NVHN--FVEHRYALLELS 260 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TT--CCTT--CHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC--Cchh--HHHHHHHHHHHH
Confidence 6777778888888888776543211 14677888888888888888888888877 32 3422 333355667777
Q ss_pred ChHHHHHHH
Q 048780 306 QHQKANGLL 314 (325)
Q Consensus 306 ~~~~a~~~~ 314 (325)
++++|.+.+
T Consensus 261 ~~~~a~~~~ 269 (275)
T 1xnf_A 261 LLGQDQDDL 269 (275)
T ss_dssp HHHHC----
T ss_pred HHHhhHHHH
Confidence 777777665
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.7e-12 Score=101.68 Aligned_cols=202 Identities=15% Similarity=0.054 Sum_probs=136.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhc
Q 048780 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100 (325)
Q Consensus 21 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 100 (325)
.....|..+...+.+.|++++|...|+++.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------------------------------------- 53 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----------------------------------------------- 53 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 455677788888888999999999998887531
Q ss_pred CchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh
Q 048780 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180 (325)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (325)
+.+...+..+...+...|++++|++.|+...+.. |+ +...+..+...|..
T Consensus 54 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 54 --------KEDAIPYINFANLLSSVNELERALAFYDKALELD--SS--------------------AATAYYGAGNVYVV 103 (243)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHH
T ss_pred --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--Cc--------------------chHHHHHHHHHHHH
Confidence 1133455667777888888888888888887652 22 56677778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 260 (325)
.|++++|.+.+++..+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 104 ~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 164 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG------------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQ 164 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHH
Confidence 888888888888887752 3355667777888888888888888888877654 236777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+...+...|++++|...++...... +.+..++..+...|...|++++|.+.+++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888888888888888876432 335677888888888888888888888887664
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=2.8e-12 Score=100.44 Aligned_cols=186 Identities=10% Similarity=0.054 Sum_probs=151.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|+..|+...... +.+...+..+...+.+.|++++|...|++..+..
T Consensus 36 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------------------- 87 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--------------------------- 87 (243)
T ss_dssp ------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred hhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------------
Confidence 478999999999998865 5578899999999999999999999999987541
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
+.+...+..+...+...|++++|.+.++.+.+.. |+
T Consensus 88 ----------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~-------------- 123 (243)
T 2q7f_A 88 ----------------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--ME-------------- 123 (243)
T ss_dssp ----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CC--------------
T ss_pred ----------------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC--------------
Confidence 1134456677788899999999999999988763 22
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 124 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 124 ------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN------------------ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp ------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred ------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHcCCHHHHH
Confidence 56678888999999999999999999998752 345667888899999999999999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
+.++...+.. +.+..++..+...|...|++++|...++...+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999987764 23678899999999999999999999999874
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.52 E-value=5.6e-12 Score=101.75 Aligned_cols=229 Identities=14% Similarity=0.040 Sum_probs=166.9
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH----------HHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----------LVALN 70 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~----------~~a~~ 70 (325)
+|+++.|+..++. . -+|+..++..+...+.+.|+.++|.+.++++...+..|+...+...+ +.|++
T Consensus 47 ~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~ 122 (291)
T 3mkr_A 47 QRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122 (291)
T ss_dssp TTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4777777776654 2 26788889999999999999999999999998877667765554433 33333
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccH
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 150 (325)
.++. +.+...+..+...+.+.|++++|.+.|+.+.+.. |+.. .
T Consensus 123 ~l~~----------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~-~ 165 (291)
T 3mkr_A 123 TLHQ----------------------------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDAT-L 165 (291)
T ss_dssp HHTT----------------------------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-H
T ss_pred HHhC----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcH-H
Confidence 3322 3456678888999999999999999999998873 4321 0
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHH
Q 048780 151 NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230 (325)
Q Consensus 151 ~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~ 230 (325)
.....+.+..+...|++++|..+|+++.+. .+.+..+++.+..++
T Consensus 166 -----------------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------------------~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 166 -----------------TQLATAWVSLAAGGEKLQDAYYIFQEMADK------------------CSPTLLLLNGQAACH 210 (291)
T ss_dssp -----------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------------------SCCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHhCchHHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHH
Confidence 011122334445679999999999999986 355778888999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHH-HHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHH
Q 048780 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI-AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309 (325)
Q Consensus 231 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 309 (325)
.+.|++++|+..|++...... -+..++..+...+...|+.++ +.++++++.+. .|+... +.+...+.+.+++
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~~---~~d~~~~~~~fd~ 283 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHPF---IKEYRAKENDFDR 283 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHH---HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCChH---HHHHHHHHHHHHH
Confidence 999999999999999887653 378899999999999999876 67888887733 444322 2333444445554
Q ss_pred HHH
Q 048780 310 ANG 312 (325)
Q Consensus 310 a~~ 312 (325)
+..
T Consensus 284 ~~~ 286 (291)
T 3mkr_A 284 LVL 286 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=3.8e-12 Score=98.16 Aligned_cols=195 Identities=14% Similarity=0.025 Sum_probs=138.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|+..|+...+.. +.+...|..+...+.+.|++++|...|++..+. .|+
T Consensus 18 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~----------------------- 71 (217)
T 2pl2_A 18 LGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR----------------------- 71 (217)
T ss_dssp TTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------
Confidence 489999999999999876 567889999999999999999999999999865 222
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
+...+..+-..+...+.. ... .....|++++|+..|++..+. .|+
T Consensus 72 -----~~~a~~~lg~~~~~~~~~-----~~~---------~~~~~g~~~~A~~~~~~al~~--~P~-------------- 116 (217)
T 2pl2_A 72 -----YLGGYMVLSEAYVALYRQ-----AED---------RERGKGYLEQALSVLKDAERV--NPR-------------- 116 (217)
T ss_dssp -----CHHHHHHHHHHHHHHHHT-----CSS---------HHHHHHHHHHHHHHHHHHHHH--CTT--------------
T ss_pred -----cHHHHHHHHHHHHHhhhh-----hhh---------hcccccCHHHHHHHHHHHHHh--Ccc--------------
Confidence 222222222222211100 000 112239999999999998876 343
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
+...|..+-.++...|++++|...|++..+.. .+...+..+..++...|++++|.
T Consensus 117 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~la~~~~~~g~~~~A~ 171 (217)
T 2pl2_A 117 ------YAPLHLQRGLVYALLGERDKAEASLKQALALE-------------------DTPEIRSALAELYLSMGRLDEAL 171 (217)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-------------------cchHHHHHHHHHHHHcCCHHHHH
Confidence 66788889999999999999999999998863 35566777799999999999999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..|+...+... -+...+..+...+...|++++|...|+..-
T Consensus 172 ~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 172 AQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999987653 367889999999999999999999988754
No 39
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=3.9e-11 Score=97.73 Aligned_cols=220 Identities=12% Similarity=0.048 Sum_probs=156.6
Q ss_pred chHHHHHHHHHhcCCCCchhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 048780 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCT-------EGRI-------LEAARLFKKLNVFCCDPNVITFNTLALVALN 70 (325)
Q Consensus 5 ~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~ 70 (325)
++|+.+|+...... +.++..|..+...+.. .|++ ++|..+|++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------------------ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------ 93 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------------------
Confidence 57888999988764 5677888888887764 4775 6777777776641
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccH
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 150 (325)
+.| -+...|..+...+.+.|++++|.++|++..+. .|+
T Consensus 94 ------------~~p------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~---- 131 (308)
T 2ond_A 94 ------------LLK------------------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI---- 131 (308)
T ss_dssp ------------TTT------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSS----
T ss_pred ------------hCc------------------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--ccc----
Confidence 011 12345667777778888999999999888874 342
Q ss_pred HHHHHHHHhhcCCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHH
Q 048780 151 NTLMDGFAWWSKGCRHDVY-SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229 (325)
Q Consensus 151 ~~ll~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~ 229 (325)
+.. +|..+...+.+.|++++|..+|++..+.. +++...|......
T Consensus 132 ----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------------------p~~~~~~~~~a~~ 177 (308)
T 2ond_A 132 ----------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------------------RTRHHVYVTAALM 177 (308)
T ss_dssp ----------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------------------TCCTHHHHHHHHH
T ss_pred ----------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHH
Confidence 333 67788888888889999999998887652 1223333333333
Q ss_pred HH-HcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--cHHhHHHHHHHHHccCC
Q 048780 230 LY-KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP--DVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 230 ~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~ 306 (325)
.. ..|+.++|..+|+...+... -+...|..++..+.+.|++++|..+|+.......+.| ....|..++....+.|+
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 22 26889999999888766532 2677888888888888999999999988874333454 35678888888888899
Q ss_pred hHHHHHHHHHHHHc
Q 048780 307 HQKANGLLLDMEET 320 (325)
Q Consensus 307 ~~~a~~~~~~m~~~ 320 (325)
.+.|..+++++.+.
T Consensus 257 ~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888887754
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.8e-10 Score=92.01 Aligned_cols=160 Identities=9% Similarity=-0.073 Sum_probs=130.8
Q ss_pred ChhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh----cC
Q 048780 111 DVVTLNVMTDNLSK----DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK----DR 182 (325)
Q Consensus 111 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~----~g 182 (325)
+...+..+-..|.. .+++++|++.|+...+.+ +...+..+-..|.. .+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------------YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------------CccHHHHHHHHHHcCCCccc
Confidence 44556667777777 899999999999988764 45567778888888 99
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCcCHHHH
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK----NGFVLEAMKVFSAIGNHKCVLTIETC 258 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 258 (325)
++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 129 ~~~~A~~~~~~a~~~~--------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 185 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN--------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGC 185 (273)
T ss_dssp CHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHhcC--------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 9999999999998864 34455666777887 899999999999988765 56778
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 048780 259 NCLIDGLCK----IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----EGQHQKANGLLLDMEETG 321 (325)
Q Consensus 259 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 321 (325)
..+-..|.. .+++++|...|+...+. + +...+..+-..|.+ .+++++|.+.+++..+.|
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888889999 99999999999988743 2 36677788888888 899999999999987765
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=5.1e-11 Score=89.21 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=143.1
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...|..+-..|.+.|++++|++.|++..+. .|+ +..++..+..+|.+.|++++|...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~--------------------~~~~~~~la~~~~~~~~~~~a~~~ 61 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPN--------------------NVETLLKLGKTYMDIGLPNDAIES 61 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5678899999999999999999999999876 344 677888999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
+....... +.+...+..+...+...++++.|.+.+........ -+...+..+...|.+.|+
T Consensus 62 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 62 LKKFVVLD------------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp HHHHHHHC------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCC
Confidence 99988762 34566777778889999999999999998877653 367889999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.
T Consensus 123 ~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 123 HDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999999887432 346778999999999999999999999988764
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=3.3e-11 Score=100.71 Aligned_cols=163 Identities=8% Similarity=-0.040 Sum_probs=130.6
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...|..+-..+.+.|++++|+..|+.+.+. .|+ +...|..+-.++.+.|++++|+..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~--------------------~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAK--------------------NYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--Ccc--------------------CHHHHHHHHHHHHHcCChHHHHHH
Confidence 4556777778888889999999999999886 333 778899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH-cCCHHHH-----HHHHHHHhhCCCCcCHHHHHHHHHH
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK-NGFVLEA-----MKVFSAIGNHKCVLTIETCNCLIDG 264 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~m~~~~~~~~~~~~~~ll~~ 264 (325)
|+++.+.. +.+..+|+.+..++.. .|..++| ++.+++....... +...|..+...
T Consensus 223 ~~~al~l~------------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~l 283 (382)
T 2h6f_A 223 VDQLLKED------------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGI 283 (382)
T ss_dssp HHHHHHHC------------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHhC------------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 99999863 4467788888999999 6665777 4778877765532 67788888888
Q ss_pred HHhcC--ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC---------ChHHHHHHHHHH
Q 048780 265 LCKIG--RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG---------QHQKANGLLLDM 317 (325)
Q Consensus 265 ~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m 317 (325)
+.+.| ++++|.+.+..+. . -..+...+..+...|.+.| ..++|.++++++
T Consensus 284 l~~~g~~~~~~a~~~~~~~~-~--~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 284 LQDRGLSKYPNLLNQLLDLQ-P--SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HTTTCGGGCHHHHHHHHHHT-T--TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHccCccchHHHHHHHHHhc-c--CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 88888 6899999998872 2 2446678888888888864 258999999998
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=1.2e-11 Score=104.88 Aligned_cols=265 Identities=12% Similarity=0.068 Sum_probs=169.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCc---hhHHHHH------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNM----VTFNSLIKGLCTEGRILEAARLFKKLNVFC--CDPNV---ITFNTLA------ 65 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~---~~~~~l~------ 65 (325)
.|++++|+..|+...+.+ +.+. ..|..+...|...|++++|...|++..+.. ...+. ..+..+-
T Consensus 61 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 367777777777776653 2222 356667777777777777777777665421 00011 1111110
Q ss_pred ---HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcC-CCCChhhHHHHHHHHHccCc--------------
Q 048780 66 ---LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG-MRPDVVTLNVMTDNLSKDGK-------------- 127 (325)
Q Consensus 66 ---~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~-------------- 127 (325)
+.|...+++..+.. ...+ ......++..+...|...|+
T Consensus 140 g~~~~A~~~~~~al~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLA------------------------RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp TCHHHHHHHHHHHHHHH------------------------HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred CCHHHHHHHHHHHHHHH------------------------HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 44444444433321 0001 11134567788888888999
Q ss_pred ---HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCh
Q 048780 128 ---MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR-ADA 203 (325)
Q Consensus 128 ---~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~ 203 (325)
+++|++.+++..+...... .......++..+...|...|++++|.+.+++..+.... ++.
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLG----------------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 8999998887654310000 00013457788889999999999999999988764100 000
Q ss_pred hhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-----cCHHHHHHHHHHHHhcCChHHHHHHH
Q 048780 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV-----LTIETCNCLIDGLCKIGRLKIAWDIF 278 (325)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (325)
.....++..+...|...|++++|.+.+++....... ....++..+...|...|++++|...+
T Consensus 260 -------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 260 -------------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp -------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 001236788899999999999999999887653211 12567888999999999999999999
Q ss_pred HHHhhCC---C-CCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 279 HMLMQNP---G-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 279 ~~~~~~~---~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+...... + ......++..+...|...|++++|.+.+++..+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8875311 1 011245778888999999999999999998764
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=1.5e-11 Score=100.87 Aligned_cols=268 Identities=12% Similarity=0.016 Sum_probs=177.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-chhHHHHH------
Q 048780 1 MGRASGGFVLLGRILMSCFTPN----MVTFNSLIKGLCTEGRILEAARLFKKLNVF----CCDPN-VITFNTLA------ 65 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~l~------ 65 (325)
.|++++|+..|+...+.. +.+ ...|..+...+...|++++|.+.+++..+. +..|. ...+..+.
T Consensus 18 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 488999999999988874 223 467888889999999999999999887643 11111 11111111
Q ss_pred ---HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCc---------------
Q 048780 66 ---LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK--------------- 127 (325)
Q Consensus 66 ---~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--------------- 127 (325)
+.|...+++..+.... .++. .....++..+...+...|+
T Consensus 97 g~~~~A~~~~~~al~~~~~--~~~~---------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRE--LNDK---------------------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHH--TTCH---------------------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred cCHHHHHHHHHHHHHHHHH--hcCc---------------------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 4555555554443200 0000 0113366777778888888
Q ss_pred -----HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048780 128 -----MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202 (325)
Q Consensus 128 -----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 202 (325)
+++|.+.+++......... ........+..+...+...|++++|.+.+++..+.....
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~- 216 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALG----------------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF- 216 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-
Confidence 8888888877654210000 000134567788889999999999999999887531000
Q ss_pred hhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHhcCChHHHHHH
Q 048780 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCVL-TIETCNCLIDGLCKIGRLKIAWDI 277 (325)
Q Consensus 203 ~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~ 277 (325)
........++..+...+...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...
T Consensus 217 -----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 217 -----------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 000011346788899999999999999999887542 1111 155778888999999999999999
Q ss_pred HHHHhhCC---C-CCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 278 FHMLMQNP---G-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 278 ~~~~~~~~---~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
++...... + ......++..+...|.+.|++++|...+++..+.
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 98775311 1 1112447788889999999999999999998764
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=1.5e-10 Score=92.30 Aligned_cols=212 Identities=8% Similarity=-0.067 Sum_probs=154.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC---chhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 35 TEGRILEAARLFKKLNVFCCDPN---VITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 35 ~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
..|++++|...|+++.+.....+ ...+..+. +.|.+.|+++.+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------- 73 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----------------------- 73 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----------------------
Confidence 45788999999999887532111 11222221 56666666665543
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (325)
+.+...|..+...|...|++++|.+.|+...+.. |+ +...+..+..+|.+.|
T Consensus 74 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~--------------------~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 74 ------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT--------------------YNYAHLNRGIALYYGG 125 (275)
T ss_dssp ------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CTHHHHHHHHHHHHTT
T ss_pred ------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--cc--------------------ccHHHHHHHHHHHHhc
Confidence 2356678888899999999999999999998762 32 5678888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
++++|.+.|+++.+.. |+.......+..+...|++++|...++...... .++...+ .+.
T Consensus 126 ~~~~A~~~~~~a~~~~-------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~ 184 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQDD-------------------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIV 184 (275)
T ss_dssp CHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHH
T ss_pred cHHHHHHHHHHHHHhC-------------------CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHH
Confidence 9999999999998752 222233333455567799999999997776653 2343344 477
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCc-----HHhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048780 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPD-----VVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
..+...++.++|...+.... .. .|+ ...|..+...|.+.|++++|...+++..+..
T Consensus 185 ~~~~~~~~~~~a~~~~~~~~-~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 185 EFYLGNISEQTLMERLKADA-TD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHTTSSCHHHHHHHHHHHC-CS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHh-cc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 77888888999999998876 32 232 5788889999999999999999999988653
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=3.4e-11 Score=101.68 Aligned_cols=266 Identities=12% Similarity=0.029 Sum_probs=174.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC-chhHHHHH------
Q 048780 1 MGRASGGFVLLGRILMSCFTPN----MVTFNSLIKGLCTEGRILEAARLFKKLNVFC----CDPN-VITFNTLA------ 65 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~~~-~~~~~~l~------ 65 (325)
.|++++|+..|+.....+ +.+ ...|..+...+...|++++|...|++..+.. ..|. ...+..+.
T Consensus 22 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 478888888888887764 223 3567778888888888888888888765431 1111 11111111
Q ss_pred ---HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCc---------------
Q 048780 66 ---LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK--------------- 127 (325)
Q Consensus 66 ---~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--------------- 127 (325)
+.|...+++..+... .. ........++..+...|...|+
T Consensus 101 g~~~~A~~~~~~al~~~~-----~~------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISR-----EL------------------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp TCHHHHHHHHHHHHHHHH-----HH------------------TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred CCHHHHHHHHHHHHHHHH-----hc------------------ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 455555555444320 00 0001113467777788888888
Q ss_pred -----HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C
Q 048780 128 -----MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR-A 201 (325)
Q Consensus 128 -----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~ 201 (325)
+++|.+.++.......... .......++..+...|...|++++|.+.+++..+.... +
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALG----------------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc----------------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 8999988887654310000 00013456788889999999999999999988754100 1
Q ss_pred ChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHhcCChHHHHH
Q 048780 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCVL-TIETCNCLIDGLCKIGRLKIAWD 276 (325)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~ 276 (325)
+.. ....++..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|..
T Consensus 222 ~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 222 DKA-------------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp CHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcH-------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 100 01346788899999999999999999887542 2111 15678889999999999999999
Q ss_pred HHHHHhhC---CCCC-CcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 277 IFHMLMQN---PGLT-PDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 277 ~~~~~~~~---~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.++..... .+-. ....++..+...|...|++++|.+.+++..+
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99877532 1111 1155778888899999999999999988654
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.9e-11 Score=104.46 Aligned_cols=214 Identities=11% Similarity=-0.077 Sum_probs=168.4
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCc
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRI-LEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVI 82 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~ 82 (325)
+++|+..++...... +.+...|..+...+...|++ ++|.+.|++..+..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----------------------------- 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----------------------------- 133 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----------------------------
Confidence 455666666655443 34677788888888888888 88888888877531
Q ss_pred cCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcC
Q 048780 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162 (325)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 162 (325)
+.+...|..+...|.+.|++++|.+.|+...+.. |
T Consensus 134 --------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p----------------- 168 (474)
T 4abn_A 134 --------------------------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--K----------------- 168 (474)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--C-----------------
T ss_pred --------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C-----------------
Confidence 1234567778888999999999999999998763 4
Q ss_pred CCCCchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc
Q 048780 163 GCRHDVYSYNILINGYCKD---------RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233 (325)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~ 233 (325)
+...+..+..+|... |++++|.+.|++..+.. +.+...|..+..+|...
T Consensus 169 ----~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 169 ----NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD------------------VLDGRSWYILGNAYLSL 226 (474)
T ss_dssp ----CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHH
Confidence 446677788888888 99999999999998862 44677888889999988
Q ss_pred --------CCHHHHHHHHHHHhhCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc
Q 048780 234 --------GFVLEAMKVFSAIGNHKCV--LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303 (325)
Q Consensus 234 --------~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (325)
|++++|++.|++..+.... -+...|..+..+|...|++++|...|+...+.. +-+...+..+...+..
T Consensus 227 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 227 YFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 9999999999999876421 378899999999999999999999999987432 3356678888889999
Q ss_pred cCChHHHHHHHHH
Q 048780 304 EGQHQKANGLLLD 316 (325)
Q Consensus 304 ~g~~~~a~~~~~~ 316 (325)
.|++++|.+.+++
T Consensus 305 lg~~~eAi~~~~~ 317 (474)
T 4abn_A 305 LSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999876544
No 48
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.38 E-value=4.3e-12 Score=105.75 Aligned_cols=170 Identities=11% Similarity=0.010 Sum_probs=84.1
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh-------hcCCCCCchhhHHHHHHHHHhcC
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW-------WSKGCRHDVYSYNILINGYCKDR 182 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------~~~~~~~~~~~~~~li~~~~~~g 182 (325)
+|..+|..++..+...|++++|.+.++...+. .++..+.+.++.+|.+ .+--..|+..+|+.+...|...|
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 136 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTCC----------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcC
Confidence 45556666666666666676666655544442 3334555556666655 11112356679999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
++++|..+|..+ ..|..+..++.+.|++++|.+.++.+ .++.+|..++
T Consensus 137 ~yeeA~~~Y~~a--------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~ 184 (449)
T 1b89_A 137 MYDAAKLLYNNV--------------------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 184 (449)
T ss_dssp CTTTHHHHHHHT--------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CHHHHHHHHHHh--------------------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHH
Confidence 999999999976 24777799999999999999999988 2789999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.+|...|+++.|......+. +.|+. ...++..|.+.|.+++|..+++.-..
T Consensus 185 ~aCv~~~ef~lA~~~~l~L~----~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHIV----VHADE--LEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTTT----TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHHHHH----hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 99999999999966554322 34444 55789999999999999999988653
No 49
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.38 E-value=4.8e-09 Score=91.08 Aligned_cols=278 Identities=10% Similarity=0.003 Sum_probs=182.1
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchhHHHHH------------
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCT----EGRILEAARLFKKLNVFCCDPNVITFNTLA------------ 65 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~------------ 65 (325)
+++++|+..|+...+.| +...+..|-..|.. .+++++|...|++..+.| +...+..+-
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 67788888888887754 56677778888887 788888888888887765 222322221
Q ss_pred -HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHh----cCc-------hhhcCCCCChhhHHHHHHHHHc----cCcHH
Q 048780 66 -LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF-------MMDQGMRPDVVTLNVMTDNLSK----DGKME 129 (325)
Q Consensus 66 -~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~-------~~~~~~~~~~~~~~~ll~~~~~----~g~~~ 129 (325)
+.|++.|+...+.+ +...+..|-..|.. .++ ..+.--..+...+..+...|.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 67788888777654 45666666666665 343 1111112345566667677765 67888
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHh--------------hc-CCCCCchhhHHHHHHHHHhc-----CCHHHHHH
Q 048780 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WS-KGCRHDVYSYNILINGYCKD-----RNVEDAVS 189 (325)
Q Consensus 130 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--------------~~-~~~~~~~~~~~~li~~~~~~-----g~~~~a~~ 189 (325)
+|.++|+...+.|.. ..+..+-..+.. .. ....-+...+..+-..|... +++++|..
T Consensus 241 ~A~~~~~~a~~~~~~---~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 241 QSRVLFSQSAEQGNS---IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHHHHTTTCH---HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 888888887766421 111111111111 00 00001233444455555554 66666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcC---CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG---FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 266 (325)
.|++..+.| +...+..+-..|...| +.++|.+.|++..+.| +...+..+-..|.
T Consensus 318 ~~~~a~~~~--------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 318 WYTKSAEQG--------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALL 374 (490)
T ss_dssp HHHHHHHTT--------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhcC--------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 666666543 3445566677777656 7889999998888765 6778888888888
Q ss_pred h----cCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 048780 267 K----IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----EGQHQKANGLLLDMEETG 321 (325)
Q Consensus 267 ~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 321 (325)
. .+++++|...|+...+ .+ +...+..|-..|.+ .++.++|...+++..+.|
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAE-QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHh-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8 7899999999998873 33 46677788888887 789999999999887765
No 50
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.36 E-value=5.1e-09 Score=90.96 Aligned_cols=279 Identities=10% Similarity=-0.032 Sum_probs=193.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchhHHHHH-----------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCT----EGRILEAARLFKKLNVFCCDPNVITFNTLA----------- 65 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~----------- 65 (325)
.+++++|+..|+...+.| +...+..|-..|.. .+++++|.+.|++..+.| +...+..+-
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 378899999999998764 56788889999999 999999999999998876 333333332
Q ss_pred --HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHh----cCc-------hhhcCCCCChhhHHHHHHHHHc----cCcH
Q 048780 66 --LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF-------MMDQGMRPDVVTLNVMTDNLSK----DGKM 128 (325)
Q Consensus 66 --~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~-------~~~~~~~~~~~~~~~ll~~~~~----~g~~ 128 (325)
+.|++.|+...+.+ +...+..|-..|.. .++ ..+.--..+...+..+-..|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCH
Confidence 78899999988765 45666667667765 333 1111112467788888888887 8999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh---------------cCCCCCchhhHHHHHHHHHh----cCCHHHHHH
Q 048780 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------------SKGCRHDVYSYNILINGYCK----DRNVEDAVS 189 (325)
Q Consensus 129 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---------------~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 189 (325)
++|.++|+...+.|. ...+..+-..+... ..-...+...+..+-..|.. .+++++|.+
T Consensus 204 ~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 204 AISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 999999999988752 22222222222210 00000122333344444444 556666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc-----CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN-----GFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 264 (325)
.|+...+.| +...+..+...|... ++.++|...++...+.| +...+..+-..
T Consensus 281 ~~~~a~~~~--------------------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 281 WYRKSAEQG--------------------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHTTT--------------------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHcC--------------------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 666555432 345566667777776 89999999999888776 45667777777
Q ss_pred HHhcC---ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 048780 265 LCKIG---RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----EGQHQKANGLLLDMEETG 321 (325)
Q Consensus 265 ~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 321 (325)
|...| ++++|.+.|+...+ . .+...+..|-..|.. .+++++|..++++..+.|
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 77766 78899999998874 3 356778888888888 789999999999887765
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=6.2e-10 Score=83.21 Aligned_cols=167 Identities=16% Similarity=0.047 Sum_probs=139.0
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhc
Q 048780 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100 (325)
Q Consensus 21 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 100 (325)
-+..+|..+...|.+.|++++|...|++..+.. |
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------------------------------p--------------- 36 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------------------------------P--------------- 36 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------------------T---------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------C---------------
Confidence 367789999999999999999999999988641 1
Q ss_pred CchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh
Q 048780 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180 (325)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (325)
-+...|..+...|.+.|++++|.+.++...... |+ +...+..+...+..
T Consensus 37 ---------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~--------------------~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 37 ---------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TT--------------------SAEAYYILGSANFM 85 (184)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--------------------CHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ch--------------------hHHHHHHHHHHHHH
Confidence 134466777888999999999999999987763 22 56677777888899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 260 (325)
.++++.|.+.+.+..+. .+.+..++..+...+.+.|++++|++.|++..+... -+..+|..
T Consensus 86 ~~~~~~a~~~~~~a~~~------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~ 146 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIAL------------------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQS 146 (184)
T ss_dssp TTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh------------------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHH
Confidence 99999999999998875 244667788889999999999999999999887653 37788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 048780 261 LIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
+..+|.+.|++++|.+.|++..+
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999998873
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.8e-10 Score=85.82 Aligned_cols=166 Identities=18% Similarity=0.135 Sum_probs=139.1
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...|..+...+...|++++|.+.++.+.+. .|+ +...+..+...+...|++++|.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~~A~~~~ 65 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAF--------------------DVDVALHLGIAYVKTGAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSC--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccc--------------------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345677888899999999999999877654 232 5677888899999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCh
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 271 (325)
++..+.. +.+..++..+...+...|++++|.+.++...+.. +.+...+..+...+...|++
T Consensus 66 ~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 66 ERSLADA------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRF 126 (186)
T ss_dssp HHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcC------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcH
Confidence 9998762 3456778888999999999999999999987764 34778899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 272 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
++|...++...... +.+...+..+...+...|++++|.+.+++..+.
T Consensus 127 ~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 127 DEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999987432 345788899999999999999999999988753
No 53
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=8e-11 Score=95.56 Aligned_cols=228 Identities=17% Similarity=0.114 Sum_probs=162.6
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhc
Q 048780 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100 (325)
Q Consensus 21 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 100 (325)
.+..++..+...+...|++++|...|+++.+. +..... ++
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------------------~~~~~~-------~~-------------- 64 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALED-------------------LEKTSG-------HD-------------- 64 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HHHHHC-------SS--------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHHcC-------CC--------------
Confidence 35677899999999999999999999998752 111100 00
Q ss_pred CchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh
Q 048780 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180 (325)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (325)
.......+..+...|...|++++|.+.+++........ ..........++..+...|..
T Consensus 65 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~ 123 (311)
T 3nf1_A 65 -------HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT--------------LGKDHPAVAATLNNLAVLYGK 123 (311)
T ss_dssp -------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--------------hCCCChHHHHHHHHHHHHHHH
Confidence 01123466778888999999999999999887641000 000001145678889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCc-
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH------KCVL- 253 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~~- 253 (325)
.|++++|.+.|++..+..... .....+....++..+...+...|++++|.+.+++..+. +..|
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKV----------LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH----------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred cCcHHHHHHHHHHHHHHHHHh----------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999987641000 00001123456788899999999999999999888664 2122
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-----------------------------------------------C
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-----------------------------------------------G 286 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----------------------------------------------~ 286 (325)
...++..+...|...|++++|...++...... .
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 35578889999999999999999998876310 1
Q ss_pred CCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
-..+..++..+..+|.+.|++++|.+++++..+
T Consensus 274 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 274 SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122456788889999999999999999998765
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.32 E-value=1.2e-09 Score=86.89 Aligned_cols=202 Identities=11% Similarity=-0.031 Sum_probs=154.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
...+......+.+.|++++|...|++..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------- 33 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK------------------------------------------------- 33 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------------------------------------
Confidence 4456667788899999999999999987641
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (325)
+.+...+..+...|...|++++|++.++...+.+..|+ .....|..+...|...|
T Consensus 34 ------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 34 ------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK-------------------AKSADFEYYGKILMKKG 88 (272)
T ss_dssp ------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT-------------------CCHHHHHHHHHHHHHTT
T ss_pred ------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh-------------------HHHHHHHHHHHHHHHcc
Confidence 11334677788899999999999999999988432221 12445788889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
++++|.+.|++..+.. +.+..+|..+...|...|++++|.+.+++..+.. +.+...|..+.
T Consensus 89 ~~~~A~~~~~~a~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~ 149 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELG 149 (272)
T ss_dssp CHHHHHHHHHHHHHHS------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHH
Confidence 9999999999998852 3456788889999999999999999999988764 33667777777
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC---hHHHHHHHHHHHH
Q 048780 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ---HQKANGLLLDMEE 319 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~ 319 (325)
..+...+++++|.+.|+...+.. +.+...+..+...+...|+ +++|...+++..+
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 34444569999999999987432 2346777778888888887 7778888877654
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.31 E-value=9.2e-09 Score=81.98 Aligned_cols=193 Identities=11% Similarity=-0.011 Sum_probs=157.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhc
Q 048780 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100 (325)
Q Consensus 21 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 100 (325)
-++.++..+...+.+.|++++|...|++..+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------------------------------------------- 36 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----------------------------------------------- 36 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------------------------------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------------------------------------
Confidence 356778888899999999999999999887521
Q ss_pred CchhhcCCCCChhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 048780 101 GFMMDQGMRPDVVTLNVMTDNLSK----DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176 (325)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~ 176 (325)
+...+..+-..|.. .+++++|++.|++..+.+ +...+..+-.
T Consensus 37 ----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------~~~a~~~lg~ 82 (273)
T 1ouv_A 37 ----------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------------------YSNGCHLLGN 82 (273)
T ss_dssp ----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------CHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------------------CHHHHHHHHH
Confidence 11234445566666 899999999999998774 4556777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHHHhh
Q 048780 177 GYCK----DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK----NGFVLEAMKVFSAIGN 248 (325)
Q Consensus 177 ~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~ 248 (325)
.|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|.+.|++..+
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~--------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK--------------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC--------------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 8888 999999999999998764 45566777888988 9999999999999988
Q ss_pred CCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----cCChHHHHHHHHHHHHc
Q 048780 249 HKCVLTIETCNCLIDGLCK----IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----EGQHQKANGLLLDMEET 320 (325)
Q Consensus 249 ~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 320 (325)
.+ +...+..+-..|.. .+++++|...|+...+. + +...+..+-..|.. .+++++|...+++..+.
T Consensus 143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 76 56678888888888 89999999999998743 2 46778888888999 99999999999988766
Q ss_pred C
Q 048780 321 G 321 (325)
Q Consensus 321 g 321 (325)
+
T Consensus 216 ~ 216 (273)
T 1ouv_A 216 E 216 (273)
T ss_dssp T
T ss_pred C
Confidence 4
No 56
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=5.3e-09 Score=91.75 Aligned_cols=311 Identities=8% Similarity=0.037 Sum_probs=183.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH--------------H
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------------L 66 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~--------------~ 66 (325)
+|++++|..+|+.+.... +.+...|..++..+.+.|++++|..+|++..+. .|+...|...+ +
T Consensus 25 ~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHH
Confidence 478999999999999874 567788999999999999999999999999876 46777766654 1
Q ss_pred HHHHHHHHHHHhcCCccC-ccHHHHHHHHHHHHh---------cCc------hhhcCC-CCCh---hhHHHHHHHH----
Q 048780 67 VALNLFEEMVNEFGVICK-PDVVTCTNIIDGLCK---------DGF------MMDQGM-RPDV---VTLNVMTDNL---- 122 (325)
Q Consensus 67 ~a~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~---------~~~------~~~~~~-~~~~---~~~~~ll~~~---- 122 (325)
.+.++|+.....-+ .. ++...|...+..... .|+ ..+..+ .|+. ..|.......
T Consensus 102 ~~~~~~~~al~~~g--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 102 KMAQAYDFALDKIG--MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHTT--TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCC--CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 23347777665432 23 356777777765543 233 111111 2322 3333222211
Q ss_pred ---------HccCcHHHHHHHHHHHH------HCC---CCCCc--------ccHHHHHH---------------------
Q 048780 123 ---------SKDGKMEEANCLLEVMI------QRD---VNPNT--------CTYNTLMD--------------------- 155 (325)
Q Consensus 123 ---------~~~g~~~~a~~~~~~m~------~~g---~~~~~--------~~~~~ll~--------------------- 155 (325)
.+.+++..|..+++... +.. +.|+. ..|...+.
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 13456677777776532 111 22321 11211111
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCC-hhhHHHHHH---------
Q 048780 156 GFAWWSKGCRHDVYSYNILINGYCK-------DRNVE-------DAVSLCREMLSEGIRAD-ATTYNTLFM--------- 211 (325)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~-~~~~~~ll~--------- 211 (325)
.|-+.-...+.+...|..+...+.+ .|+++ +|..+|++..+. +.|+ ...+..+..
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHH
Confidence 1111000112345667777776665 68876 889999888752 2333 333333222
Q ss_pred -------HhCCCCCCh--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH-HHHhcCChHHHHHHHHHH
Q 048780 212 -------AINNVPPDS--HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID-GLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 212 -------~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~ 281 (325)
......|+. .+|..++..+.+.|++++|.++|+...+... .+...|..... .+...|+.++|..+|+..
T Consensus 339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 111233432 4677777777777778888888777765431 12222222221 233578888888888876
Q ss_pred hhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 282 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+.. +-+...|..++..+.+.|+.++|..+|++....
T Consensus 418 l~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 418 LKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 6332 225677888888888888888888888888765
No 57
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.29 E-value=5.9e-10 Score=87.79 Aligned_cols=121 Identities=16% Similarity=0.068 Sum_probs=89.0
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048780 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200 (325)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 200 (325)
.+.+.|++++|.+.++.+... .|+ +...+..+...+...|++++|...|++..+..
T Consensus 114 ~~~~~~~~~~a~~~~~~~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 169 (258)
T 3uq3_A 114 ILTKLRNAEKELKKAEAEAYV--NPE--------------------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-- 169 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhHHHHHHHHHHHHHHc--Ccc--------------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Confidence 355557788888888887765 221 45567777778888888888888888887652
Q ss_pred CChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048780 201 ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (325)
+.+..+|..+...+...|++++|...++...+.. +.+...|..+...+.+.|++++|...++.
T Consensus 170 ----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 170 ----------------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3345667777888888888888888888877654 23567788888888888888888888877
Q ss_pred Hh
Q 048780 281 LM 282 (325)
Q Consensus 281 ~~ 282 (325)
..
T Consensus 233 a~ 234 (258)
T 3uq3_A 233 AR 234 (258)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 58
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=5.7e-09 Score=90.02 Aligned_cols=293 Identities=12% Similarity=-0.015 Sum_probs=179.3
Q ss_pred CCCcchHHHHHHHHHhc--------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCC-chhHHHH-
Q 048780 1 MGRASGGFVLLGRILMS--------CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC------CDPN-VITFNTL- 64 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~--------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~~~~-~~~~~~l- 64 (325)
+|++++|++.|+...+. ..+....+|+.+...|...|++++|...|++..+.. ..++ ..++...
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 58999999999876542 112345689999999999999999999998886531 1111 2233221
Q ss_pred ---H-------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhc---Cch--------hhcCCCC-ChhhHHHHHHHH
Q 048780 65 ---A-------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---GFM--------MDQGMRP-DVVTLNVMTDNL 122 (325)
Q Consensus 65 ---~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~--------~~~~~~~-~~~~~~~ll~~~ 122 (325)
+ +.|++.|++..+.. +-+...+..+..++.+. +.. ....+.| +...+..+...+
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 1 78999999998864 33455555555444333 220 0112334 344555554444
Q ss_pred Hc----cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048780 123 SK----DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198 (325)
Q Consensus 123 ~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 198 (325)
.. .|++++|.+.+++..... |+ +..++..+...|...|++++|...+++..+..
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~--~~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKA--PG--------------------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHC--SS--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhC--cc--------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 43 467788999998877652 32 56678888899999999999999999888753
Q ss_pred CCCCh-hhHHHHHH------------------------------------HhCCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 048780 199 IRADA-TTYNTLFM------------------------------------AINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241 (325)
Q Consensus 199 ~~~~~-~~~~~ll~------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (325)
|+. ..+..+-. .....+.+..++..+...+...|++++|++
T Consensus 278 --p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 278 --PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 332 22221100 111234456678889999999999999999
Q ss_pred HHHHHhhCCCCcCHH--HHHHHHH-HHHhcCChHHHHHHHHHHhhCCC----------------------CCCcHHhHHH
Q 048780 242 VFSAIGNHKCVLTIE--TCNCLID-GLCKIGRLKIAWDIFHMLMQNPG----------------------LTPDVVTYNI 296 (325)
Q Consensus 242 ~~~~m~~~~~~~~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~----------------------~~p~~~~~~~ 296 (325)
.|++..+....+... .+..+.. .....|++++|...|.+..+-.. -+.+..+|..
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999987765443321 2222222 23467899999888876652110 1234678888
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC
Q 048780 297 MIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
+-..|...|++++|.+.|++..+.|
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHCC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8899999999999999999987754
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=3.2e-10 Score=92.01 Aligned_cols=202 Identities=18% Similarity=0.108 Sum_probs=150.5
Q ss_pred CCCcchHHHHHHHHHhc-------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMS-------CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~ 73 (325)
.|++++|+.+|+...+. ..+....++..+...|...|++++|...|++..+. ++
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~~ 100 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI-------------------RE 100 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------HH
Confidence 48899999999998773 23445678899999999999999999999987642 11
Q ss_pred HHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC------CCCCCc
Q 048780 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR------DVNPNT 147 (325)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~~~ 147 (325)
.... ++ .+.....+..+...|...|++++|.+.|++..+. +..|
T Consensus 101 ~~~~-------~~---------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-- 150 (311)
T 3nf1_A 101 KTLG-------KD---------------------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP-- 150 (311)
T ss_dssp HHHC-------TT---------------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH--
T ss_pred HHhC-------CC---------------------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh--
Confidence 1100 00 0112346777888999999999999999988764 1111
Q ss_pred ccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHhCCCCCChHhHH
Q 048780 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG---IRADATTYNTLFMAINNVPPDSHVYT 224 (325)
Q Consensus 148 ~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~~~ 224 (325)
.....+..+...|...|++++|.++|++..+.. ..++ .+....++.
T Consensus 151 ------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~ 199 (311)
T 3nf1_A 151 ------------------DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------------DPNVAKTKN 199 (311)
T ss_dssp ------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-------------CHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------------CHHHHHHHH
Confidence 145678888999999999999999999987641 0000 111345678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC------------------------------------------------CCCcCHH
Q 048780 225 TYIDGLYKNGFVLEAMKVFSAIGNH------------------------------------------------KCVLTIE 256 (325)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~m~~~------------------------------------------------~~~~~~~ 256 (325)
.+...|...|++++|.+.+++..+. ....+..
T Consensus 200 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (311)
T 3nf1_A 200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT 279 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH
Confidence 8899999999999999999888652 1123456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 257 TCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
++..+..+|.+.|++++|.+.|+...
T Consensus 280 ~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 280 TLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78889999999999999999998765
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=5.8e-10 Score=100.56 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=143.3
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...|+.+-..|.+.|++++|++.|++..+. .|+ +...|..+-.+|.+.|++++|++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~--------------------~~~a~~nLg~~l~~~g~~~eA~~~ 65 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE--------------------FAAAHSNLASVLQQQGKLQEALMH 65 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC--------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4678999999999999999999999999876 444 677899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
|++..+.. +.+..+|..+..+|...|++++|++.|++..+.... +...|..+-.+|...|+
T Consensus 66 ~~~Al~l~------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 66 YKEAIRIS------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 99998752 345778899999999999999999999998876533 67899999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 271 LKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+++|.+.|++..+. .| +...|..+..+|...|++++|.+.+++..+
T Consensus 127 ~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 127 IPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999998743 34 467889999999999999999998887754
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=3.5e-09 Score=86.11 Aligned_cols=185 Identities=10% Similarity=0.023 Sum_probs=143.5
Q ss_pred chHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccC
Q 048780 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84 (325)
Q Consensus 5 ~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~ 84 (325)
++|+.+|+.....-.+-+...|..+...+.+.|++++|..+|++..+. .|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~--------------------------- 131 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI--------------------------- 131 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSS---------------------------
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--ccc---------------------------
Confidence 899999999998422456678999999999999999999999999863 111
Q ss_pred ccHHHHHHHHHHHHhcCchhhcCCCCChh-hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCC
Q 048780 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVV-TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163 (325)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 163 (325)
+.. .|..+...+.+.|++++|.++|+...+.. |+
T Consensus 132 --------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~----------------- 166 (308)
T 2ond_A 132 --------------------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT----------------- 166 (308)
T ss_dssp --------------------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TC-----------------
T ss_pred --------------------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-----------------
Confidence 122 56677777888899999999999988753 22
Q ss_pred CCCchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 048780 164 CRHDVYSYNILING-YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242 (325)
Q Consensus 164 ~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (325)
+...|...... +...|++++|..+|+...+. .+.+...|..++..+.+.|+.++|..+
T Consensus 167 ---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~g~~~~A~~~ 225 (308)
T 2ond_A 167 ---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------------------YGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp ---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------------------HTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 23334333333 22369999999999998875 234567788889999999999999999
Q ss_pred HHHHhhCC-CCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 243 FSAIGNHK-CVL--TIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 243 ~~~m~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
|++..... ..| ....|..++....+.|+.+.|..+++.+.+.
T Consensus 226 ~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998863 344 4678899999999999999999999988743
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.26 E-value=1.6e-09 Score=90.58 Aligned_cols=197 Identities=10% Similarity=0.037 Sum_probs=160.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
...|+.+...+.+.|++++|+..|++..+.. |
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------------------------------P----------------- 128 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------------------------------A----------------- 128 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------------------------------T-----------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------------------------------c-----------------
Confidence 4578888888999999999999999988641 1
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCc-HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhc
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKDGK-MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (325)
-+...|+.+-..+...|+ +++|++.|++..+.. |+ +...|..+-.++...
T Consensus 129 -------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~--------------------~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 129 -------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PK--------------------NYQVWHHRRVLVEWL 179 (382)
T ss_dssp -------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHHH
T ss_pred -------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CC--------------------CHHHHHHHHHHHHHc
Confidence 134466777778888896 999999999998863 33 678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 048780 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261 (325)
Q Consensus 182 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 261 (325)
|++++|+..|++..+.. +.+..+|..+..++...|++++|+..++++.+.... +...|+.+
T Consensus 180 g~~~eAl~~~~kal~ld------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~l 240 (382)
T 2h6f_A 180 RDPSQELEFIADILNQD------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQR 240 (382)
T ss_dssp TCCTTHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 99999999999999862 457788999999999999999999999999887644 78899999
Q ss_pred HHHHHh-cCChHHH-----HHHHHHHhhCCCCCCcHHhHHHHHHHHHccC--ChHHHHHHHHHH
Q 048780 262 IDGLCK-IGRLKIA-----WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG--QHQKANGLLLDM 317 (325)
Q Consensus 262 l~~~~~-~g~~~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m 317 (325)
..++.. .|..++| ...++...... +-+...|..+...+...| ++++|.+.++++
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 999999 6665777 47777766322 235678888888888888 689999998887
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=2.3e-09 Score=79.76 Aligned_cols=164 Identities=18% Similarity=0.108 Sum_probs=135.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 102 (325)
...|..+...+...|++++|...|+++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------------------- 38 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD------------------------------------------------- 38 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------------------------------------------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------------------------------------
Confidence 4567778888899999999999998876421
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (325)
+.+...+..+...+...|++++|.+.++.+.+.. |+ +...+..+...+...|
T Consensus 39 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 39 ------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PD--------------------NVKVATVLGLTYVQVQ 90 (186)
T ss_dssp ------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHHHT
T ss_pred ------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC--------------------CHHHHHHHHHHHHHhc
Confidence 1234456777888899999999999999988762 32 5667888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+.
T Consensus 91 ~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 151 (186)
T 3as5_A 91 KYDLAVPLLIKVAEAN------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA 151 (186)
T ss_dssp CHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence 9999999999988762 3456778888999999999999999999987765 33678899999
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 048780 263 DGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~ 282 (325)
..+...|++++|...++...
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999876
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=5.2e-10 Score=96.63 Aligned_cols=186 Identities=15% Similarity=0.022 Sum_probs=149.9
Q ss_pred CCCc-chHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc
Q 048780 1 MGRA-SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79 (325)
Q Consensus 1 ~g~~-~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~ 79 (325)
.|++ ++|++.|+...+.. +.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 115 ~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------- 166 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--------------------------- 166 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------------------------
T ss_pred ccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------------------
Confidence 4788 99999999998875 456889999999999999999999999998853
Q ss_pred CCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHcc---------CcHHHHHHHHHHHHHCCCCCCcccH
Q 048780 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD---------GKMEEANCLLEVMIQRDVNPNTCTY 150 (325)
Q Consensus 80 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~ 150 (325)
.|+ ...+..+...+... |++++|++.|++..+. .|+
T Consensus 167 ----~p~-------------------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~---- 211 (474)
T 4abn_A 167 ----CKN-------------------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL---- 211 (474)
T ss_dssp ----CCC-------------------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT----
T ss_pred ----CCC-------------------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC----
Confidence 222 23444555566666 9999999999999876 343
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHh
Q 048780 151 NTLMDGFAWWSKGCRHDVYSYNILINGYCKD--------RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222 (325)
Q Consensus 151 ~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 222 (325)
+...|..+..+|... |++++|.+.|++..+.. |. ...+..+
T Consensus 212 ----------------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-------------~~~~~~~ 260 (474)
T 4abn_A 212 ----------------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RK-------------ASSNPDL 260 (474)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GG-------------GGGCHHH
T ss_pred ----------------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CC-------------cccCHHH
Confidence 567788888888888 99999999999998852 10 0136778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++++|.+.+..+
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888999999999999999999998876532 6778888999999999999988765443
No 65
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=1.1e-08 Score=89.88 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=156.8
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 048780 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCT-------EGRIL-------EAARLFKKLNVFCCDPNVITFNTLALVALNL 71 (325)
Q Consensus 6 ~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~ 71 (325)
+|+.+|+...... +.+...|..+...+.+ .|+++ +|..+|++..+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~------------------- 315 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------- 315 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------------------
Confidence 5667777777653 4567778877777765 67776 555555555421
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHH
Q 048780 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151 (325)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 151 (325)
. . +.+...|..+...+.+.|++++|.++|+.+.+. .|+
T Consensus 316 ------~-----~------------------------p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~----- 353 (530)
T 2ooe_A 316 ------L-----L------------------------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI----- 353 (530)
T ss_dssp ------T-----C------------------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS-----
T ss_pred ------h-----C------------------------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc-----
Confidence 0 0 123456677777888899999999999999875 332
Q ss_pred HHHHHHHhhcCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHH-H
Q 048780 152 TLMDGFAWWSKGCRHD-VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID-G 229 (325)
Q Consensus 152 ~ll~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~-~ 229 (325)
+ ...|..++..+.+.|++++|.++|++..+.. | .+...|..... .
T Consensus 354 ---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~----------------~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 354 ---------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--R----------------TRHHVYVTAALME 400 (530)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--T----------------CCTHHHHHHHHHH
T ss_pred ---------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--C----------------CchHHHHHHHHHH
Confidence 2 2478888888888999999999999988752 1 11222222121 2
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc--HHhHHHHHHHHHccCCh
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD--VVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 307 (325)
+...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|+.........|+ ...|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 336899999999999887654 236788999999999999999999999998854434443 45788888888889999
Q ss_pred HHHHHHHHHHHH
Q 048780 308 QKANGLLLDMEE 319 (325)
Q Consensus 308 ~~a~~~~~~m~~ 319 (325)
+.+..+.+++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 66
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=4.7e-08 Score=81.59 Aligned_cols=266 Identities=12% Similarity=0.050 Sum_probs=169.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchh----HHHHH------
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMV----TFNSLIKGLCTEGRILEAARLFKKLNVFCCD-PNVIT----FNTLA------ 65 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~----~~~l~------ 65 (325)
.|++++|...++.........+.. +++.+...+...|++++|...+++..+..-. .+... +..+-
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 478889999999877654222222 4566677788889999999998887653111 11110 01110
Q ss_pred ---HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCC--C-ChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 048780 66 ---LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--P-DVVTLNVMTDNLSKDGKMEEANCLLEVMI 139 (325)
Q Consensus 66 ---~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 139 (325)
+.|...+++..+.. ...+.. | ....+..+...+...|++++|.+.+++..
T Consensus 107 G~~~~A~~~~~~al~~~------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLI------------------------NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp TCHHHHHHHHHHHHHHH------------------------HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH------------------------HHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45555555544432 011111 2 23456667788899999999999999987
Q ss_pred HCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhCCCCC
Q 048780 140 QRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA-TTYNTLFMAINNVPP 218 (325)
Q Consensus 140 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~ 218 (325)
........ ......+..+...+...|++++|...+++.......++. ..+..
T Consensus 163 ~~~~~~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~---------- 215 (373)
T 1hz4_A 163 EVLSSYQP-----------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS---------- 215 (373)
T ss_dssp HHTTTSCG-----------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH----------
T ss_pred HHhhccCc-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH----------
Confidence 65322110 012345677888899999999999999988764211110 00000
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCCcH-
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL---TIETCNCLIDGLCKIGRLKIAWDIFHMLMQ---NPGLTPDV- 291 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~p~~- 291 (325)
......+..+...|++++|...++........+ ....+..+...+...|++++|...++.... ..+..++.
T Consensus 216 --~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 216 --NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 001123455778999999999999887643221 133567788899999999999999987642 12222233
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 292 VTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
..+..+..++...|+.++|...+++...
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677788999999999999887653
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=9.9e-10 Score=87.67 Aligned_cols=244 Identities=14% Similarity=0.020 Sum_probs=157.3
Q ss_pred CCCcchHHHHHHHHHhc-------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMS-------CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~ 73 (325)
.|++++|+.+|++..+. ..+....++..+...|...|++++|...|++..+. .+
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~~ 74 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI-------------------RE 74 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------------------HH
Confidence 36778888888876552 22335678999999999999999999999998743 11
Q ss_pred HHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHH
Q 048780 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153 (325)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 153 (325)
.. . .++ .+....++..+...|...|++++|.+.|++........
T Consensus 75 ~~---~----~~~---------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------- 118 (283)
T 3edt_B 75 KT---L----GKD---------------------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-------- 118 (283)
T ss_dssp HH---T----CTT---------------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--------
T ss_pred HH---c----CCc---------------------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--------
Confidence 10 0 000 01123467788889999999999999999887641000
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHhCCCCCChHhHHHHHHHH
Q 048780 154 MDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG---IRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230 (325)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~ 230 (325)
.....+....++..+...|...|++++|.+.|++..+.- ..++ .+....++..+...|
T Consensus 119 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 119 ------LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD-------------DPNVAKTKNNLASCY 179 (283)
T ss_dssp ------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT-------------CHHHHHHHHHHHHHH
T ss_pred ------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------------CHHHHHHHHHHHHHH
Confidence 000001146678889999999999999999999987640 0010 111345678889999
Q ss_pred HHcCCHHHHHHHHHHHhhC-------CCCcC-HHHHHHHHHHHHhcCC------hHHHHHHHHHHhhCCCCCCcHHhHHH
Q 048780 231 YKNGFVLEAMKVFSAIGNH-------KCVLT-IETCNCLIDGLCKIGR------LKIAWDIFHMLMQNPGLTPDVVTYNI 296 (325)
Q Consensus 231 ~~~~~~~~a~~~~~~m~~~-------~~~~~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~p~~~~~~~ 296 (325)
...|++++|.+.+++..+. ...+. ...|..+...+...+. +..+...++... ........++..
T Consensus 180 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 257 (283)
T 3edt_B 180 LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK--VDSPTVNTTLRS 257 (283)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC--CCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 9999999999999888653 11222 2233333333333333 333333333222 111234567888
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc
Q 048780 297 MIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+...|...|++++|..++++..+.
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999999987653
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=3.4e-09 Score=95.59 Aligned_cols=166 Identities=17% Similarity=0.133 Sum_probs=141.0
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhc
Q 048780 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100 (325)
Q Consensus 21 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 100 (325)
-+..+|+.|-..|.+.|++++|.+.|++..+. .|
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-------------------------------~P--------------- 40 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV-------------------------------FP--------------- 40 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------CS---------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------CC---------------
Confidence 35678999999999999999999999998864 11
Q ss_pred CchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh
Q 048780 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180 (325)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (325)
-+...|..+-..|.+.|++++|++.|++..+. .|+ +...|..+-.+|.+
T Consensus 41 ---------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~--------------------~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 41 ---------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT--------------------FADAYSNMGNTLKE 89 (723)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------CHHHHHHHHHHHHH
Confidence 13456777888999999999999999998876 343 67789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 260 (325)
.|++++|.+.|++..+.. +.+..+|+.+..+|...|++++|++.|++..+.... +...|..
T Consensus 90 ~g~~~~A~~~~~kAl~l~------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~ 150 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQIN------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCN 150 (723)
T ss_dssp TTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhh
Confidence 999999999999988752 346778899999999999999999999998876532 6788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHh
Q 048780 261 LIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
+..++...|++++|.+.+++..
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHH
Confidence 9999999999999988887764
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=6.4e-09 Score=72.86 Aligned_cols=131 Identities=16% Similarity=0.204 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC------------------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 46778889999999999999999998752 335567777899999999999999999998876
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
+ +.+...+..+...+...|++++|.+.++.+.... +.+...+..+...+.+.|++++|.+.++++.+..
T Consensus 65 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 65 D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred C-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 5 3367788899999999999999999999987432 3457788899999999999999999999988653
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.15 E-value=6.2e-08 Score=90.89 Aligned_cols=254 Identities=12% Similarity=0.119 Sum_probs=174.6
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~ 72 (325)
|++++|.++.+.. -+..+|..+..++.+.|++++|.+.|.+. -|...|..+. +++++.+
T Consensus 1090 ~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455555555533 34678888889999999999999998664 2445555544 6788888
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCchhh---cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCccc
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 149 (325)
...++.. ++....+.+..+|++.+++.. .--.++...|..+-..|...|++++|..+|...
T Consensus 1158 ~mArk~~-----~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------- 1221 (1630)
T 1xi4_A 1158 QMARKKA-----RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------- 1221 (1630)
T ss_pred HHHHhhc-----ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------
Confidence 7766643 333333358888888876332 223456667778888889999999999999863
Q ss_pred HHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-------------HhCCC
Q 048780 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM-------------AINNV 216 (325)
Q Consensus 150 ~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-------------~~~~~ 216 (325)
..|..+..+|++.|++++|.+.+++.. +..+|..+-. ...++
T Consensus 1222 -------------------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1222 -------------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred -------------------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 257888888888899999988887662 2344332211 11234
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCC-----
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG--RLKIAWDIFHMLMQNPGLTP----- 289 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p----- 289 (325)
..+...+..++..|.+.|.+++|+.+++...... .-....|+-+...|++.. +..++.++|.. .-+++|
T Consensus 1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~---rini~k~~r~~ 1352 (1630)
T 1xi4_A 1277 VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAA 1352 (1630)
T ss_pred hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH---hcccchHhHHH
Confidence 4466677889999999999999999998776554 334557777777777653 44455555543 333333
Q ss_pred -cHHhHHHHHHHHHccCChHHHHH
Q 048780 290 -DVVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 290 -~~~~~~~li~~~~~~g~~~~a~~ 312 (325)
+...|..++..|.+.|+++.|..
T Consensus 1353 e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1353 EQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHH
Confidence 56789999999999999999884
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=5.5e-09 Score=87.70 Aligned_cols=176 Identities=13% Similarity=0.013 Sum_probs=126.8
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
..+++.+...|...|++++|++.|++..+.....+. ......++..+-.+|...|++++|.+.|
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----------------PQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----------------hHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 346778888999999999999999988754211100 0002346788899999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCC-CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCcCHHHHHHHHHHHH
Q 048780 192 REMLSEGIRADATTYNTLFMAINNV-PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCVLTIETCNCLIDGLC 266 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~ 266 (325)
++..+... ..+. +....++..+...+.+.|++++|...+++..+. +-......+..+-..|.
T Consensus 248 ~~al~~~~-------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 248 KRAIAVFE-------------ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp HHHHHHHH-------------HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-------------hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 98876300 0011 223456788899999999999999999887543 21222334677788888
Q ss_pred hcCC---hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 267 KIGR---LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 267 ~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
..|+ +++|..+++... ........+..+...|...|++++|...+++..+
T Consensus 315 ~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESKM---LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp SSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8898 777888777653 1122345677888899999999999999998765
No 72
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.15 E-value=9.1e-08 Score=89.78 Aligned_cols=263 Identities=13% Similarity=0.057 Sum_probs=170.0
Q ss_pred CCCcchHHHHHHHHHhcCC--CCchhhHHHHH---------------------------HHHHhcCCHHHHHHHHHHHHh
Q 048780 1 MGRASGGFVLLGRILMSCF--TPNMVTFNSLI---------------------------KGLCTEGRILEAARLFKKLNV 51 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~--~~~~~~~~~ll---------------------------~~~~~~g~~~~a~~~~~~m~~ 51 (325)
+|.+.+|+++++.+.-.+- .-+...-+.++ ..+...|.+++|..+|++...
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~ 1077 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV 1077 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 4778889999998874321 01223333333 345567788888888887531
Q ss_pred cCCCCCchhHHHHH------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhc----CCCCChhhHHHHHHH
Q 048780 52 FCCDPNVITFNTLA------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----GMRPDVVTLNVMTDN 121 (325)
Q Consensus 52 ~g~~~~~~~~~~l~------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~----~~~~~~~~~~~ll~~ 121 (325)
.....+.++ ++|.++.++. -+..+|..+-.++...|+..++ --.-|...|..++..
T Consensus 1078 -----~~~A~~VLie~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~ 1143 (1630)
T 1xi4_A 1078 -----NTSAVQVLIEHIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA 1143 (1630)
T ss_pred -----HHHHHHHHHHHHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHH
Confidence 111222232 3344443322 3477888999999999983322 223678889999999
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhc-------CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS-------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 194 (325)
|.+.|++++|.+.+....+.. ++....+.+..+|++.+ --..++...|..+-..|...|++++|..+|...
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 999999999999999877654 33333334666665511 112345556677888888888899998888874
Q ss_pred HHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHH
Q 048780 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274 (325)
Q Consensus 195 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 274 (325)
. .|..+..++.+.|++++|.+.+++.. +..+|..+-.+|...|++..|
T Consensus 1222 ~--------------------------ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1222 S--------------------------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred h--------------------------HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHH
Confidence 2 36666888888888888888887652 456666666666666666666
Q ss_pred HHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 275 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
......+ ..+...+..++..|.+.|.+++|.++++.-
T Consensus 1270 ~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1270 QMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6654432 224445556666677777777777666554
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=1.7e-08 Score=78.16 Aligned_cols=168 Identities=10% Similarity=-0.080 Sum_probs=134.6
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
.|+..+...-..+...|++++|++.|+...+....+ +...+..+..++...|++++|.+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~A~~ 63 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ---------------------DSVTAYNCGVCADNIKKYKEAAD 63 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC---------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---------------------CcHHHHHHHHHHHHhhcHHHHHH
Confidence 355778888889999999999999999998864322 45566668889999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH-------HHHHHHH
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI-------ETCNCLI 262 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll 262 (325)
.|++..+.. +.+..+|..+...+...|++++|.+.+++..+.... +. ..|..+-
T Consensus 64 ~~~~al~~~------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g 124 (228)
T 4i17_A 64 YFDIAIKKN------------------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEG 124 (228)
T ss_dssp HHHHHHHTT------------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHh
Confidence 999998752 335667888899999999999999999998775422 34 4577888
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCc---HHhHHHHHHHHHccCCh---------------------------HHHHH
Q 048780 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPD---VVTYNIMIHGFCKEGQH---------------------------QKANG 312 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~---------------------------~~a~~ 312 (325)
..+...|++++|...|+... .. .|+ ...|..+...|...|+. ++|..
T Consensus 125 ~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 125 QKFQQAGNIEKAEENYKHAT-DV--TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVD 201 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH-hc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999987 32 555 56777788888887777 88888
Q ss_pred HHHHHHHc
Q 048780 313 LLLDMEET 320 (325)
Q Consensus 313 ~~~~m~~~ 320 (325)
.+++..+.
T Consensus 202 ~~~~a~~l 209 (228)
T 4i17_A 202 YLGEAVTL 209 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 88887764
No 74
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=1.2e-08 Score=71.39 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=108.7
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
.|..+...+...|++++|.++++.+.+.. |+ +...+..+...+...|++++|..++++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 60 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PR--------------------SAEAWYNLGNAYYKQGDYDEAIEYYQK 60 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--Cc--------------------chhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 56778889999999999999999998753 22 566778888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHH
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 273 (325)
+.+.+ +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++
T Consensus 61 ~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 61 ALELD------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HHHHC------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHC------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHH
Confidence 98753 3345677788999999999999999999988765 3367788899999999999999
Q ss_pred HHHHHHHHh
Q 048780 274 AWDIFHMLM 282 (325)
Q Consensus 274 a~~~~~~~~ 282 (325)
|...++.+.
T Consensus 122 A~~~~~~~~ 130 (136)
T 2fo7_A 122 AIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 75
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.08 E-value=2.8e-08 Score=83.63 Aligned_cols=246 Identities=12% Similarity=0.060 Sum_probs=167.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----hHHHHH---------HHHHHHHHHHHHhcCCccCc
Q 048780 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI-----TFNTLA---------LVALNLFEEMVNEFGVICKP 85 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~~~l~---------~~a~~~~~~~~~~~~~~~~~ 85 (325)
......+......+.+.|++++|...|++..+. .|+.. .+..+. +.|...+++......
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----- 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR----- 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----
Confidence 455667778888999999999999999999886 33321 222221 556666665544320
Q ss_pred cHHHHHHHHHHHHhcCchhhcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCC
Q 048780 86 DVVTCTNIIDGLCKDGFMMDQGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164 (325)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 164 (325)
..+-.| ....+..+...|...|++++|...+++..+...... ..
T Consensus 79 -------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~ 123 (406)
T 3sf4_A 79 -------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN----------------DK 123 (406)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------CH
T ss_pred -------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc----------------cc
Confidence 001111 244677788899999999999999998775411100 00
Q ss_pred CCchhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHH
Q 048780 165 RHDVYSYNILINGYCKDRN--------------------VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224 (325)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~ 224 (325)
.....++..+...|...|+ +++|.+.+++..+..... ...+....++.
T Consensus 124 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~ 191 (406)
T 3sf4_A 124 VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL------------GDRAAQGRAFG 191 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------cCcHHHHHHHH
Confidence 0024467788889999999 999999998776421000 00011234678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCC-cHHhHH
Q 048780 225 TYIDGLYKNGFVLEAMKVFSAIGNH----KCV-LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGLTP-DVVTYN 295 (325)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~ 295 (325)
.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|...++..... .+..+ ...++.
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 8899999999999999999887643 111 11347888899999999999999999877521 11111 156778
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 048780 296 IMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.+...|...|++++|.+.+++..+
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH
Confidence 888999999999999999988764
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=3e-09 Score=84.81 Aligned_cols=142 Identities=18% Similarity=0.116 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHC------CCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQR------DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (325)
..++..+...|...|++++|++.+++..+. +-.| ....++..+...|...|+++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP--------------------AVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH--------------------HHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch--------------------HHHHHHHHHHHHHHHhccHH
Confidence 456778888999999999999999988765 1112 14567888999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCc-CHHHH
Q 048780 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH------KCVL-TIETC 258 (325)
Q Consensus 186 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~ 258 (325)
+|.+.|++..+.... . .....+....++..+...|...|++++|.+.+++..+. +-.| ...++
T Consensus 103 ~A~~~~~~al~~~~~--------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 103 EAEPLCKRALEIREK--------V--LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHHHHHHHHHHHH--------H--HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------H--cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999988764100 0 00001223566788899999999999999999888664 1122 45678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
..+...|...|++++|...++....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999988763
No 77
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.07 E-value=1.7e-08 Score=85.38 Aligned_cols=243 Identities=11% Similarity=0.024 Sum_probs=165.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----hHHHHH---------HHHHHHHHHHHHhcCCccCccHHH
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI-----TFNTLA---------LVALNLFEEMVNEFGVICKPDVVT 89 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~ 89 (325)
..+..+...+...|++++|...|++..+. .|+.. .+..+- +.|...+++..+.... . .
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~-~---- 120 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS-M-N---- 120 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-T-T----
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-c-c----
Confidence 44556777888999999999999999886 34322 222221 5666666665543200 0 0
Q ss_pred HHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchh
Q 048780 90 CTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169 (325)
Q Consensus 90 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~ 169 (325)
........+..+...|...|++++|.+.+++..+...... .......
T Consensus 121 -----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~~~ 167 (411)
T 4a1s_A 121 -----------------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG----------------DRLSEGR 167 (411)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------CHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh----------------chHHHHH
Confidence 0112345677888899999999999999998765411000 0011345
Q ss_pred hHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH
Q 048780 170 SYNILINGYCKDRN-----------------VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232 (325)
Q Consensus 170 ~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~ 232 (325)
++..+...|...|+ +++|.+.+++..+.... .........++..+...+..
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~~la~~~~~ 235 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD------------LGDRGAQGRACGNLGNTYYL 235 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH------------HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHHH
Confidence 77888889999999 99999998876542100 00001123467888999999
Q ss_pred cCCHHHHHHHHHHHhhCCCC-cC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CC-CCcHHhHHHHHHHHHc
Q 048780 233 NGFVLEAMKVFSAIGNHKCV-LT----IETCNCLIDGLCKIGRLKIAWDIFHMLMQNP---GL-TPDVVTYNIMIHGFCK 303 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~li~~~~~ 303 (325)
.|++++|.+.+++..+.... ++ ..++..+...|...|++++|...++...... +. .....++..+...|..
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 315 (411)
T 4a1s_A 236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999887653211 11 3378889999999999999999998775321 10 1125678888899999
Q ss_pred cCChHHHHHHHHHHHH
Q 048780 304 EGQHQKANGLLLDMEE 319 (325)
Q Consensus 304 ~g~~~~a~~~~~~m~~ 319 (325)
.|++++|.+.+++..+
T Consensus 316 ~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 316 LHEFNTAIEYHNRHLA 331 (411)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.07 E-value=3.2e-08 Score=80.78 Aligned_cols=243 Identities=13% Similarity=0.067 Sum_probs=163.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----hHHHHH---------HHHHHHHHHHHHhcCCccCccHH
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI-----TFNTLA---------LVALNLFEEMVNEFGVICKPDVV 88 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~ 88 (325)
...+......+.+.|++++|...|++..+. .|+.. .+..+. +.|.+.+++..+...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------- 74 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-------- 74 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--------
Confidence 345566677888999999999999999886 34321 222221 556666665544320
Q ss_pred HHHHHHHHHHhcCchhhcCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCc
Q 048780 89 TCTNIIDGLCKDGFMMDQGM-RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167 (325)
Q Consensus 89 ~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~ 167 (325)
..+. ......+..+...+...|++++|.+.+++..+.....+. ....
T Consensus 75 ----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~~ 122 (338)
T 3ro2_A 75 ----------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KVGE 122 (338)
T ss_dssp ----------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HHHH
T ss_pred ----------------cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------chHH
Confidence 0011 112456778888999999999999999987654211000 0002
Q ss_pred hhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHH
Q 048780 168 VYSYNILINGYCKDRN--------------------VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~ 227 (325)
..++..+...|...|+ +++|.+.+++..+.... .........++..+.
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA------------LGDRAAQGRAFGNLG 190 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH------------HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh------------cCCHHHHHHHHHHHH
Confidence 3467778888999999 99999998876542100 000011234677888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhC----CC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCC-CcHHhHHHHH
Q 048780 228 DGLYKNGFVLEAMKVFSAIGNH----KC-VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP---GLT-PDVVTYNIMI 298 (325)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~-p~~~~~~~li 298 (325)
..+...|++++|.+.+++..+. +. .....++..+...+...|++++|...++...... +.. ....++..+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 9999999999999999887543 11 1123478888999999999999999998765211 111 1155777888
Q ss_pred HHHHccCChHHHHHHHHHHHH
Q 048780 299 HGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~ 319 (325)
..|...|++++|...+++..+
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 899999999999999988754
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2.9e-08 Score=79.99 Aligned_cols=174 Identities=11% Similarity=-0.063 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhc-CCHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD-RNVEDAVSL 190 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~ 190 (325)
..+|+.+...|.+.|++++|+..|++..+...... .+. .-..+++.+-..|... |++++|+..
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~--------------~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFR--------------RGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHH--------------HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHH--------------HHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 35778888999999999999999998876411000 000 0134678888899996 999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH------HHHHHHHH
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPP-DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI------ETCNCLID 263 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~ 263 (325)
|++..+..... +..+ ...++..+...+...|++++|+..|++..+....... ..|..+..
T Consensus 141 ~~~Al~~~~~~-------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 141 YELAGEWYAQD-------------QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207 (292)
T ss_dssp HHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------------CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 99887631000 0000 1345778899999999999999999998875433221 25677888
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCcH------HhHHHHHHHHH--ccCChHHHHHHHHHH
Q 048780 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDV------VTYNIMIHGFC--KEGQHQKANGLLLDM 317 (325)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m 317 (325)
++...|++++|...|+.... +.|+. ..+..++.+|. ..+++++|...++.+
T Consensus 208 ~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 89999999999999998773 23332 23445566664 456788888877654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=2.8e-08 Score=83.18 Aligned_cols=175 Identities=14% Similarity=0.001 Sum_probs=125.4
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
..+++.+-..|...|++++|.+.|++..+..-. ++. .....++..+-.+|...|++++|.+.
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND-----------------RFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 346778888999999999999999987753110 110 01245677888999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCcCHHHHHHHHHHHH
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCVLTIETCNCLIDGLC 266 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~ 266 (325)
|++..+... ..+.+....++..+...+.+.|++++|...+++..+. +-+.....+..+-..|.
T Consensus 245 ~~~al~~~~-------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 245 FQKAAKVSR-------------EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHHHHHHH-------------HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-------------hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 998876200 0011223556778899999999999999999887653 22222345666667777
Q ss_pred hcCC---hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 267 KIGR---LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 267 ~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
..++ +.+|...++... ........+..+...|...|++++|...+++..+
T Consensus 312 ~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888 777877777632 1222345667788899999999999999998764
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=1.5e-07 Score=72.76 Aligned_cols=162 Identities=13% Similarity=0.034 Sum_probs=124.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhc
Q 048780 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100 (325)
Q Consensus 21 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 100 (325)
.|+..|......+.+.|++++|...|++..+.. +
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------------------~---------------- 38 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT------------------------------N---------------- 38 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------------------------------T----------------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc------------------------------C----------------
Confidence 466888889999999999999999999988642 1
Q ss_pred CchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh
Q 048780 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180 (325)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (325)
+++...+..+...+...|++++|++.|+...+. .|+ +...|..+..+|..
T Consensus 39 --------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~--------------------~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 39 --------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN--------------------LANAYIGKSAAYRD 88 (228)
T ss_dssp --------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS--------------------HHHHHHHHHHHHHH
T ss_pred --------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc--------------------hHHHHHHHHHHHHH
Confidence 123344555777888999999999999999876 333 56778889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC---HHH
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT---IET 257 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~ 257 (325)
.|++++|.+.|++..+.. |+...+... -..+|..+-..+...|++++|++.|++..+.. |+ ...
T Consensus 89 ~~~~~~A~~~~~~al~~~--p~~~~~~~~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 155 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAV--PGNATIEKL---------YAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDA 155 (228)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHC--CCcHHHHHH---------HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHH
Confidence 999999999999998752 221111000 01457777888999999999999999998763 44 567
Q ss_pred HHHHHHHHHhcCCh
Q 048780 258 CNCLIDGLCKIGRL 271 (325)
Q Consensus 258 ~~~ll~~~~~~g~~ 271 (325)
|..+..+|...|+.
T Consensus 156 ~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 156 LYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888877776
No 82
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.00 E-value=1.3e-07 Score=81.46 Aligned_cols=271 Identities=13% Similarity=-0.017 Sum_probs=158.2
Q ss_pred CCCcchHHHHHHHHHhc-----C-C-CCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCchh-HHHHH-----
Q 048780 1 MGRASGGFVLLGRILMS-----C-F-TPNMVTFNSLIKGLCTE--GRILEAARLFKKLNVFCCDPNVIT-FNTLA----- 65 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~-----~-~-~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~-~~~l~----- 65 (325)
+|++++|...++..... + . .....++..+..++.+. +++++|.+.|++..+. .|+... +..+.
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~ 184 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYR 184 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 58899999999887542 1 0 12345566555555554 5799999999999876 455433 22221
Q ss_pred -------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc-----------hhh-cC-CCCChhhHHHHHHHHHcc
Q 048780 66 -------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMD-QG-MRPDVVTLNVMTDNLSKD 125 (325)
Q Consensus 66 -------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----------~~~-~~-~~~~~~~~~~ll~~~~~~ 125 (325)
+.|++.+++..+.. +.+...+..+...+...+. ..+ .. .+.+...+..+...|...
T Consensus 185 l~~~~~~~~al~~~~~al~l~----p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 185 LDNWPPSQNAIDPLRQAIRLN----PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHSCCCCCTHHHHHHHHHHC----SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred hcCchHHHHHHHHHHHHhhcC----CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc
Confidence 45777788777754 4456666666666665543 111 11 234567788999999999
Q ss_pred CcHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHh--------------------------------hcCCCCCchhhHH
Q 048780 126 GKMEEANCLLEVMIQRDVNPNT-CTYNTLMDGFAW--------------------------------WSKGCRHDVYSYN 172 (325)
Q Consensus 126 g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~--------------------------------~~~~~~~~~~~~~ 172 (325)
|++++|.+.+++..+. .|+. ..+..+-..|.. .....+.+...+.
T Consensus 261 ~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 338 (472)
T 4g1t_A 261 DEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338 (472)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH
T ss_pred CchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh
Confidence 9999999999998876 3443 233333222211 0111233456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHH-HHHHcCCHHHHHHHHHHHhhCCC
Q 048780 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID-GLYKNGFVLEAMKVFSAIGNHKC 251 (325)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~ 251 (325)
.+...|...|++++|.+.|++..+....+. ... ..+..+.. .....|+.++|+..+++..+...
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPV--AKQ-------------LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHH--HHH-------------HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCCh--HHH-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 888999999999999999999887643221 111 11112221 23456788888877766544221
Q ss_pred -----------------------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhH
Q 048780 252 -----------------------VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294 (325)
Q Consensus 252 -----------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 294 (325)
+.+..+|..+-..|...|++++|.+.|++..+.....|+..+|
T Consensus 404 ~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 404 KSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2356688999999999999999999999987544455665544
No 83
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.98 E-value=1.1e-06 Score=75.49 Aligned_cols=183 Identities=11% Similarity=-0.044 Sum_probs=99.5
Q ss_pred CChhhHHHHHHHHHccC---cHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh--------------cCCCCCchhhHH
Q 048780 110 PDVVTLNVMTDNLSKDG---KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYN 172 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--------------~~~~~~~~~~~~ 172 (325)
.+...+..|-..|...| +.++|++.|+...+.|..... .+..+-..|... ....+-+...+.
T Consensus 174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~ 252 (452)
T 3e4b_A 174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWV 252 (452)
T ss_dssp TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 34447788888888889 899999999998888743211 111121111110 000012223333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcC-----CHHHHHHHHH
Q 048780 173 ILING-Y--CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG-----FVLEAMKVFS 244 (325)
Q Consensus 173 ~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~ 244 (325)
.+-.. + ...+++++|.+.|++..+.| +...+..|-..|. .| ++++|.+.|+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--------------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD--------------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 33333 2 33455555555555555433 4455555555555 34 6777777776
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----cCChHHHHHHHHH
Q 048780 245 AIGNHKCVLTIETCNCLIDGLCK----IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----EGQHQKANGLLLD 316 (325)
Q Consensus 245 ~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~ 316 (325)
+.. .| +...+..|-..|.. ..++++|...|+... +.|. ......|-..|.. ..+.++|..+++.
T Consensus 312 ~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 312 KAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA-RNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp TTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH-TTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-hhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 665 33 44555555555554 236777777777666 4332 2334444444443 3467777777776
Q ss_pred HHHcCC
Q 048780 317 MEETGL 322 (325)
Q Consensus 317 m~~~g~ 322 (325)
-.+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 666553
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=9.6e-08 Score=76.28 Aligned_cols=169 Identities=11% Similarity=0.034 Sum_probs=123.4
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 109 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
.++..++..+..++...|++++|++++......|..++ +...+..++..+.+.|+++.|.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~--------------------~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG--------------------TTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT--------------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC--------------------cHHHHHHHHHHHHHCCCHHHHH
Confidence 45566667888899999999999999998766543222 6777888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCC-----ChHhHHHHHHH--HHHcC--CHHHHHHHHHHHhhCCCCcCHHHHH
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPP-----DSHVYTTYIDG--LYKNG--FVLEAMKVFSAIGNHKCVLTIETCN 259 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~ 259 (325)
+.++.|.+. .| +..+...|..+ ....| +..+|..+|+++.+.. |+..+-.
T Consensus 157 k~l~~~~~~-------------------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~ 215 (310)
T 3mv2_B 157 TIFDNYTNA-------------------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQL 215 (310)
T ss_dssp HHHHHHHHH-------------------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHH
T ss_pred HHHHHHHhc-------------------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHH
Confidence 999999875 33 23444555555 33334 8999999999997653 4533444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC----CC----CCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 260 CLIDGLCKIGRLKIAWDIFHMLMQNP----GL----TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.++.++.+.|++++|.+.++.+.+.. .. +-+..+...+|......|+ +|.++++++.+.
T Consensus 216 lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 216 GLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 55558999999999999999766321 10 2356666566655555676 788999988765
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=1.5e-07 Score=74.34 Aligned_cols=175 Identities=10% Similarity=-0.042 Sum_probs=130.6
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...+..+...+.+.|++++|.+.|+.+.+.. |+. ......+..+..+|.+.|++++|...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~-----------------~~~~~a~~~lg~~~~~~~~~~~A~~~ 74 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTH-----------------EWAADAQFYLARAYYQNKEYLLAASE 74 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCS-----------------TTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCC-----------------cchHHHHHHHHHHHHHhCcHHHHHHH
Confidence 45667777888999999999999999998763 321 01256777788899999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH--------cCCHHHHHHHHHHHhhCCCCcCHHHH----
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK--------NGFVLEAMKVFSAIGNHKCVLTIETC---- 258 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~---- 258 (325)
|+...+.. |+ .+....++..+..++.. .|++++|...|++..+.... +....
T Consensus 75 ~~~~l~~~--p~-------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~ 138 (261)
T 3qky_A 75 YERFIQIY--QI-------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ 138 (261)
T ss_dssp HHHHHHHC--TT-------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred HHHHHHHC--CC-------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH
Confidence 99998862 21 01123456667788888 99999999999998775322 22222
Q ss_pred -------------HHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHcc----------CChHHHHHHH
Q 048780 259 -------------NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKE----------GQHQKANGLL 314 (325)
Q Consensus 259 -------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~a~~~~ 314 (325)
..+...|.+.|++++|...|+.+.+...-.+ ....+..+..+|... |++++|...+
T Consensus 139 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 139 KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 4567789999999999999999874322111 345677777888766 8899999999
Q ss_pred HHHHHc
Q 048780 315 LDMEET 320 (325)
Q Consensus 315 ~~m~~~ 320 (325)
+++.+.
T Consensus 219 ~~~~~~ 224 (261)
T 3qky_A 219 ERLLQI 224 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=3e-07 Score=70.93 Aligned_cols=175 Identities=12% Similarity=0.005 Sum_probs=122.4
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...+..+...+.+.|++++|...|+.+.+.. |+. ......+..+..+|.+.|++++|...|
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~-----------------~~~~~a~~~lg~~~~~~~~~~~A~~~~ 64 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFG-----------------PYSQQVQLDLIYAYYKNADLPLAQAAI 64 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTS-----------------TTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-----------------hHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3455666778889999999999999998762 210 012356777889999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHH------------------HHcCCHHHHHHHHHHHhhCCCCc
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL------------------YKNGFVLEAMKVFSAIGNHKCVL 253 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~a~~~~~~m~~~~~~~ 253 (325)
++..+.. |+.... ..++..+..++ ...|+.++|...|+.+.+....
T Consensus 65 ~~~l~~~--P~~~~~-------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~- 128 (225)
T 2yhc_A 65 DRFIRLN--PTHPNI-------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN- 128 (225)
T ss_dssp HHHHHHC--TTCTTH-------------HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-
T ss_pred HHHHHHC--cCCCcH-------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-
Confidence 9998763 221100 01222222222 2367899999999999875322
Q ss_pred CHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHccCChHHHHHHHH
Q 048780 254 TIETC-----------------NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 254 ~~~~~-----------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
+...+ ..+...|.+.|++++|...|+.+.+...-.| ....+..+..+|.+.|++++|.+.++
T Consensus 129 ~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 129 SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 12122 2345678899999999999999885432112 13568888999999999999999999
Q ss_pred HHHHcC
Q 048780 316 DMEETG 321 (325)
Q Consensus 316 ~m~~~g 321 (325)
.+...+
T Consensus 209 ~l~~~~ 214 (225)
T 2yhc_A 209 IIAANS 214 (225)
T ss_dssp HHHHCC
T ss_pred HHHhhC
Confidence 888753
No 87
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.89 E-value=1.5e-07 Score=80.79 Aligned_cols=280 Identities=12% Similarity=-0.030 Sum_probs=158.3
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCchhHHHH-H-----------H
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRI---LEAARLFKKLNVFCCDPNVITFNTL-A-----------L 66 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~~~l-~-----------~ 66 (325)
|++++|+++|+...+.| +...+..|-..|...|+. ++|...|++..+. .|+....-.. + +
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 68899999999998876 344555666667778888 8999999998865 4443322222 2 5
Q ss_pred HHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhc----------CCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 048780 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136 (325)
Q Consensus 67 ~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~----------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 136 (325)
+|+..|+...+.+ .++ .+..|-..|...+..... .-..+...+..+...|...+.++++.+...
T Consensus 92 ~A~~~~~~Aa~~g----~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANG----EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTT----CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCC----CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 7888898888866 222 555555555554431111 011133445555566666564433333322
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCh--hhHHHHHH
Q 048780 137 VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR---NVEDAVSLCREMLSEGIRADA--TTYNTLFM 211 (325)
Q Consensus 137 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~ 211 (325)
.+.+.-... +...+..+-..|...| +.++|++.|+...+.|..... .....+..
T Consensus 166 ~~~~~a~~~---------------------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 166 RICKAALNT---------------------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHTTT---------------------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT
T ss_pred HHHHHHHcC---------------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222211111 3336777778888888 899999999988887744333 11222211
Q ss_pred HhCCC---------------CCChHhHHHHHHH-H--HHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC----
Q 048780 212 AINNV---------------PPDSHVYTTYIDG-L--YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG---- 269 (325)
Q Consensus 212 ~~~~~---------------~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---- 269 (325)
...+. +.+...+..|-.. + ...++.++|.+.|++..+.| +...+..|-..|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 00011 3455666666666 3 46889999999999888777 6667777777776 55
Q ss_pred -ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcCC
Q 048780 270 -RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----EGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 270 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 322 (325)
++++|...|+... .-+...+..|-..|.. ..+.++|..++++..+.|.
T Consensus 301 ~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8999999998755 3356666677666666 3489999999999887764
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.4e-07 Score=85.13 Aligned_cols=183 Identities=9% Similarity=-0.036 Sum_probs=136.8
Q ss_pred CCCcchHHHHHHHHH--------hcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRIL--------MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~ 72 (325)
.|++++|++.++... ... +.+...|..+...+.+.|++++|.+.|++..+..
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------- 463 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV------------------- 463 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------------
T ss_pred ccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------------------
Confidence 478899999999988 433 4567788889999999999999999999987531
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHH
Q 048780 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152 (325)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 152 (325)
+-+...|..+-..+...|++++|.+.|++..+.. |+
T Consensus 464 ------------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~------ 499 (681)
T 2pzi_A 464 ------------------------------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PG------ 499 (681)
T ss_dssp ------------------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT------
T ss_pred ------------------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC------
Confidence 1234566677778888999999999999988763 33
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH
Q 048780 153 LMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232 (325)
Q Consensus 153 ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~ 232 (325)
+...|..+-.+|.+.|++++ .+.|++..+.. +.+..+|..+..++.+
T Consensus 500 --------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~------------------P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 500 --------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTN------------------DGVISAAFGLARARSA 546 (681)
T ss_dssp --------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC------------------TTCHHHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC------------------CchHHHHHHHHHHHHH
Confidence 56678888888999999999 99999888752 3456778888999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC--------hHHHHHHHHHH
Q 048780 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR--------LKIAWDIFHML 281 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--------~~~a~~~~~~~ 281 (325)
.|++++|.+.|++..+.... +...+..+..++...++ +++|.+.+..+
T Consensus 547 ~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp TTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99999999999988765421 35667777777655443 44555555443
No 89
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=6e-08 Score=71.82 Aligned_cols=164 Identities=12% Similarity=-0.014 Sum_probs=120.6
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
.+..+...+.+.|++++|...|+...+. .|+ +...+..+..++.+.|++++|...|+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~--------------------~~~a~~~la~~~~~~g~~~~A~~~~~~ 65 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQS--------------------RGDVKLAKADCLLETKQFELAQELLAT 65 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHT--------------------SHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC--------------------cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556677888999999999999987654 333 677888899999999999999999998
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHH-HHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG-LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
..+.. | +...+..+... +...+...+|...+++..+... -+...+..+...+...|+++
T Consensus 66 a~~~~--p-----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~ 125 (176)
T 2r5s_A 66 IPLEY--Q-----------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDE 125 (176)
T ss_dssp CCGGG--C-----------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHH
T ss_pred hhhcc--C-----------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHH
Confidence 76642 1 22111111111 1222333457888888876542 26788999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+|...|+.+.+...-..+...+..+...+...|+.++|...+++...
T Consensus 126 ~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 126 EALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999883321112356888999999999999999999988654
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=1.2e-07 Score=83.81 Aligned_cols=154 Identities=9% Similarity=-0.012 Sum_probs=114.7
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 048780 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204 (325)
Q Consensus 125 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 204 (325)
.|++++|.+.|++..+. .|+ +...|..+...|.+.|++++|.+.|++..+..
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 53 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQ--------------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALH------ 53 (568)
T ss_dssp ---------------------C--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS------
T ss_pred CccHHHHHHHHHHHHHh--CCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 47889999999887664 332 56788889999999999999999999998752
Q ss_pred hHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 205 ~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
+.+..++..+...|...|++++|.+.+++..+... -+...+..+..+|.+.|++++|.+.+++..+.
T Consensus 54 ------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 54 ------------PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567788889999999999999999999887653 36789999999999999999999999998743
Q ss_pred CCCCCcHHhHHHHHHHHHcc---CChHHHHHHHHHHHHcC
Q 048780 285 PGLTPDVVTYNIMIHGFCKE---GQHQKANGLLLDMEETG 321 (325)
Q Consensus 285 ~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g 321 (325)
. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 121 ~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 121 L--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred C--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 2 33567888899999999 99999999999987653
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.86 E-value=2.5e-06 Score=71.10 Aligned_cols=243 Identities=12% Similarity=-0.037 Sum_probs=152.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch----hHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHH
Q 048780 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI----TFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTN 92 (325)
Q Consensus 26 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
+......+...|++++|...+++.....-..+.. .++.+- +.|.+.+++..+.... ..+.
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~----- 89 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ--HDVW----- 89 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh--cCcH-----
Confidence 3444556678999999999999987753111111 111110 5566666655543200 0000
Q ss_pred HHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHH
Q 048780 93 IIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN 172 (325)
Q Consensus 93 ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 172 (325)
.....++..+...+...|++++|.+.+++.......... .........+.
T Consensus 90 ----------------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~ 139 (373)
T 1hz4_A 90 ----------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL--------------EQLPMHEFLVR 139 (373)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------TTSTHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc--------------ccCcHHHHHHH
Confidence 001234566777888999999999999987754210000 00001234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 048780 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252 (325)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 252 (325)
.+...+...|++++|...+++..+....... .....++..+...+...|++++|...+++.......
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQP-------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCc-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 6778899999999999999998765322110 012345677788899999999999999887643211
Q ss_pred cC--HHHHH----HHHHHHHhcCChHHHHHHHHHHhhCCCCCC---cHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 253 LT--IETCN----CLIDGLCKIGRLKIAWDIFHMLMQNPGLTP---DVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 253 ~~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
++ ..... .....+...|++++|...++... .....+ ....+..+...+...|++++|...+++..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 207 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 11111 23345779999999999999876 322111 123566778889999999999999988754
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=9.4e-08 Score=76.80 Aligned_cols=168 Identities=11% Similarity=-0.033 Sum_probs=131.0
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...+..+...+.+.|++++|.+.|+...+. .|+ +...+..+...+.+.|++++|...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~--------------------~~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ--------------------NGEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS--------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc--------------------chhHHHHHHHHHHHCCCHHHHHHH
Confidence 4456677778888999999999999999876 343 667888899999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
+++..... |+.. .........+...++.++|...+++..... +.+...+..+...+...|+
T Consensus 174 l~~~~~~~--p~~~----------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 174 LXTIPLQD--QDTR----------------YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR 234 (287)
T ss_dssp HTTSCGGG--CSHH----------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHhCchhh--cchH----------------HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc
Confidence 99887642 2211 112222334667788888999998887765 3378899999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+++|...|..+.+...-..+...+..+...|...|+.++|...+++-..
T Consensus 235 ~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 235 NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999884422222367899999999999999999988887543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=9.9e-07 Score=69.62 Aligned_cols=192 Identities=9% Similarity=-0.043 Sum_probs=131.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHh
Q 048780 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK 99 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 99 (325)
+.+...+..+...+.+.|++++|...|+++.+.. |+.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~----------------------------------------- 48 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTH----------------------------------------- 48 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCS-----------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCC-----------------------------------------
Confidence 3466778888888999999999999999998641 110
Q ss_pred cCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 048780 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179 (325)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~ 179 (325)
+.....+..+..+|.+.|++++|+..|+...+.. |+. +.....+..+..++.
T Consensus 49 ---------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~-----------------~~~~~a~~~lg~~~~ 100 (261)
T 3qky_A 49 ---------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QID-----------------PRVPQAEYERAMCYY 100 (261)
T ss_dssp ---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-----------------TTHHHHHHHHHHHHH
T ss_pred ---------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCC-----------------chhHHHHHHHHHHHH
Confidence 0013456667788999999999999999998863 211 012445666777788
Q ss_pred h--------cCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 180 K--------DRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 180 ~--------~g~~~~a~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
. .|++++|...|++..+.. |+... .................+..+...|...|++++|...|+.+.+..
T Consensus 101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 101 KLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8 999999999999998763 22111 100000000000000112556888999999999999999987653
Q ss_pred CC--cCHHHHHHHHHHHHhc----------CChHHHHHHHHHHhhC
Q 048780 251 CV--LTIETCNCLIDGLCKI----------GRLKIAWDIFHMLMQN 284 (325)
Q Consensus 251 ~~--~~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 284 (325)
.. .....+..+..+|... |++++|...|+.+.+.
T Consensus 179 p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 179 PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 22 1345777888888866 8899999999998744
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=2e-07 Score=70.98 Aligned_cols=177 Identities=14% Similarity=0.012 Sum_probs=118.3
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
-.....+...|++++|+..|+...+. .|+....... ................+..+|.+.|++++|...|++..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~----~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW----TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH----HHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH----hhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455677899999999999998876 2321000000 00000001111222338889999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC--hHH
Q 048780 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR--LKI 273 (325)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~ 273 (325)
+.. +.+..++..+...+...|++++|...|++..+... -+..+|..+-..|...|+ .+.
T Consensus 82 ~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 82 QKA------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHH
Confidence 862 44678888999999999999999999999988653 367788888888776654 344
Q ss_pred HHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 274 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+...+.... ...|....+...-.++...|++++|...|++..+.
T Consensus 143 ~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 143 LETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 555555543 11233333444455667789999999999988753
No 95
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.84 E-value=1.6e-06 Score=72.54 Aligned_cols=174 Identities=9% Similarity=-0.055 Sum_probs=126.2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 118 MTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 118 ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
....+...|++++|.+.|++..+.-.. ++.. ....++..+-..|...|++++|...+++..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRI-----------------EKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677889999999999998864211 1110 0345788888999999999999999998876
Q ss_pred cCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHhcCCh
Q 048780 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCV-LTIETCNCLIDGLCKIGRL 271 (325)
Q Consensus 197 ~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~ 271 (325)
.-...+.. .+....+++.+...|...|++++|++.+++..+. +-. ....++..+-..|...|++
T Consensus 172 ~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 172 IYKEHEAY-----------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHTCSTT-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhCccc-----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 41110000 0012356788899999999999999999877643 211 1234788899999999999
Q ss_pred HHHHHHHHHHhh---CCCC-CCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 272 KIAWDIFHMLMQ---NPGL-TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 272 ~~a~~~~~~~~~---~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
++|...+++... ..+. +....++..+...|.+.|++++|...+++..+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988763 1122 23456788888999999999999999988654
No 96
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.83 E-value=3.8e-06 Score=70.21 Aligned_cols=262 Identities=10% Similarity=-0.039 Sum_probs=161.6
Q ss_pred CCchhhHHHHHHHH--HhcCCHHHHHHHHHHHHhc--CCCCCch--hHHHHHHHHHHHHHHHHHhcCCccCccH-----H
Q 048780 20 TPNMVTFNSLIKGL--CTEGRILEAARLFKKLNVF--CCDPNVI--TFNTLALVALNLFEEMVNEFGVICKPDV-----V 88 (325)
Q Consensus 20 ~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~--g~~~~~~--~~~~l~~~a~~~~~~~~~~~~~~~~~~~-----~ 88 (325)
.|+..+-+.|-.-| .+.+++++|..+++++.+. .++.|.. .|-.++..-..+ +... ..+.. .
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~---~~~~----~~~~~~~~~~~ 79 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQL---MLDY----LEPGKTYGNRP 79 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHH---HHHT----CCC--------
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---HHhh----cCccccccccc
Confidence 46666777777776 7899999999999998763 2323322 223333111111 1111 11111 0
Q ss_pred HHHHHHHHHHhcCchhhcCCCC--ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhhcCCCC
Q 048780 89 TCTNIIDGLCKDGFMMDQGMRP--DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTYNTLMDGFAWWSKGCR 165 (325)
Q Consensus 89 ~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~ 165 (325)
.+...+...-.... ...+ ....|...-..+...|++++|+..|++..+.... ++. .
T Consensus 80 ~~~~~l~~i~~~~~----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------~ 138 (378)
T 3q15_A 80 TVTELLETIETPQK----KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-----------------I 138 (378)
T ss_dssp CHHHHHHHHHGGGH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-----------------H
T ss_pred chHHHHHHHhccCC----CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-----------------H
Confidence 01111111000000 0000 0112233444567889999999999998865211 111 0
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 048780 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
....++..+...|...|+++.|...+++..+......... .....+++.+...|...|++++|.+.+++
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 207 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS-----------IRTIQSLFVIAGNYDDFKHYDKALPHLEA 207 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch-----------hhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1345778888999999999999999998875311100000 01235677889999999999999999987
Q ss_pred HhhC----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 246 IGNH----KCV-LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 246 m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
..+. +.. ....++..+-..|...|++++|...++....- .+.+....++..+...|.+.|++++|...+++.
T Consensus 208 al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 208 ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7542 211 12457788899999999999999999987630 011223667888888999999999999999988
Q ss_pred HHc
Q 048780 318 EET 320 (325)
Q Consensus 318 ~~~ 320 (325)
.+.
T Consensus 288 l~~ 290 (378)
T 3q15_A 288 LDH 290 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=1.3e-06 Score=66.75 Aligned_cols=164 Identities=13% Similarity=-0.006 Sum_probs=128.3
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC----CHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR----NVED 186 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~ 186 (325)
+...+..+-..|...+++++|+++|+...+.| +...+..+-..|.. + ++++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------------------------~~~a~~~lg~~y~~-~g~~~~~~~ 71 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------------------------DGDALALLAQLKIR-NPQQADYPQ 71 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHTTS-STTSCCHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------------------------CHHHHHHHHHHHHc-CCCCCCHHH
Confidence 45566777778888999999999999998875 45566667777777 6 8999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCC-cCHHHHHHH
Q 048780 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK----NGFVLEAMKVFSAIGNHKCV-LTIETCNCL 261 (325)
Q Consensus 187 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l 261 (325)
|.++|++..+.| +...+..|-..|.. .+++++|.+.|++..+.|.. .+...+..|
T Consensus 72 A~~~~~~A~~~g--------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~L 131 (212)
T 3rjv_A 72 ARQLAEKAVEAG--------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLL 131 (212)
T ss_dssp HHHHHHHHHHTT--------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 999999997765 45566666777776 78999999999999887732 126788888
Q ss_pred HHHHHh----cCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHcc-C-----ChHHHHHHHHHHHHcCC
Q 048780 262 IDGLCK----IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE-G-----QHQKANGLLLDMEETGL 322 (325)
Q Consensus 262 l~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 322 (325)
-..|.. .+++++|...|+...+. ..+...+..|-..|... | +.++|..+++...+.|.
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888888 88999999999998743 23445666777777543 3 89999999999888774
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=8.5e-06 Score=65.48 Aligned_cols=208 Identities=9% Similarity=0.016 Sum_probs=138.1
Q ss_pred cCccHHHHHHHHHHHHhcCc-hhhcCCCCChh---hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 048780 83 CKPDVVTCTNIIDGLCKDGF-MMDQGMRPDVV---TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158 (325)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~-~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 158 (325)
..|+..+...+...+...-. +.......+.. .+...+..+...|++++|.++++...+.. +........
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~----- 114 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQF----- 114 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHH-----
T ss_pred CCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHH-----
Confidence 45666666666665544333 11111222222 23344778899999999999999988742 111000000
Q ss_pred hhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHH
Q 048780 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238 (325)
Q Consensus 159 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (325)
...+..+...+...|++++|...|++..+.....+.. +. ...+++.+...|...|++++
T Consensus 115 ---------~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-~~-----------~~~~~~~lg~~y~~~g~~~~ 173 (293)
T 3u3w_A 115 ---------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-YQ-----------NLYIENAIANIYAENGYLKK 173 (293)
T ss_dssp ---------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-TH-----------HHHHHHHHHHHHHHTTCHHH
T ss_pred ---------HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH-HH-----------HHHHHHHHHHHHHHcCCHHH
Confidence 1234456677788889999999999998743221100 00 12368888999999999999
Q ss_pred HHHHHHHHhh----C-CCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCC-cHHhHHHHHHHHHccCC-h
Q 048780 239 AMKVFSAIGN----H-KCVLT-IETCNCLIDGLCKIGRLKIAWDIFHMLMQ---NPGLTP-DVVTYNIMIHGFCKEGQ-H 307 (325)
Q Consensus 239 a~~~~~~m~~----~-~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~p-~~~~~~~li~~~~~~g~-~ 307 (325)
|+..+++..+ . +..+. ..+|..+...|.+.|++++|...++...+ ..+..+ -..+|..+-.+|.+.|+ +
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 253 (293)
T 3u3w_A 174 GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcH
Confidence 9999988863 1 22222 34788999999999999999999987652 122222 26788888899999995 6
Q ss_pred HHHHHHHHHHH
Q 048780 308 QKANGLLLDME 318 (325)
Q Consensus 308 ~~a~~~~~~m~ 318 (325)
++|.+.+++..
T Consensus 254 ~~A~~~~~~Al 264 (293)
T 3u3w_A 254 AEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=2.6e-07 Score=81.76 Aligned_cols=154 Identities=10% Similarity=-0.011 Sum_probs=106.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|+..|++..+.. +.+...|..+...+.+.|++++|.+.|++..+.. |
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p------------------------ 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--P------------------------ 54 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--T------------------------
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------------------
Confidence 488999999999988764 4567889999999999999999999999988631 1
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
.+...|..+...|...|++++|.+.|++..+.. |+
T Consensus 55 -----------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-------------- 89 (568)
T 2vsy_A 55 -----------------------------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PE-------------- 89 (568)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------
T ss_pred -----------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC--------------
Confidence 133456667778888899999999998887752 32
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc---CCHH
Q 048780 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN---GFVL 237 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 237 (325)
+...+..+..+|.+.|++++|.+.|++..+.. +.+..++..+...+... |+.+
T Consensus 90 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 90 ------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL------------------PEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHhhccccHH
Confidence 56677888888889999999999998887752 33556777778888888 8999
Q ss_pred HHHHHHHHHhhCC
Q 048780 238 EAMKVFSAIGNHK 250 (325)
Q Consensus 238 ~a~~~~~~m~~~~ 250 (325)
+|.+.+++..+.+
T Consensus 146 ~A~~~~~~al~~~ 158 (568)
T 2vsy_A 146 VLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC
Confidence 9999988887654
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=1.3e-06 Score=66.41 Aligned_cols=189 Identities=9% Similarity=0.008 Sum_probs=124.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchh
Q 048780 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM 104 (325)
Q Consensus 25 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 104 (325)
.+-.....+.+.|++++|...|++..+. .|+. ...|... . .
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~----------------------------~~~~~~~--~---~---- 46 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDR----------------------------TEMYYWT--N---V---- 46 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHH----------------------------HHHHHHH--H---S----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC----------------------------hHHHHHh--h---h----
Confidence 3444556677899999999999998864 2211 1111000 0 0
Q ss_pred hcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCH
Q 048780 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184 (325)
Q Consensus 105 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (325)
.............+...|.+.|++++|...|++..+. .|+ +...+..+..+|...|++
T Consensus 47 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~--------------------~~~~~~~lg~~~~~~g~~ 104 (208)
T 3urz_A 47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APN--------------------NVDCLEACAEMQVCRGQE 104 (208)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHHHTCH
T ss_pred cchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCC--------------------CHHHHHHHHHHHHHcCCH
Confidence 0001112233455778899999999999999999876 343 677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCC--HHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF--VLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 185 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
++|...|++..+.. +.+..+|..+...|...|. ...+...++.... ..|....+...-
T Consensus 105 ~~A~~~~~~al~~~------------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 105 KDALRMYEKILQLE------------------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 99999999998862 3456777777877766554 3445555555432 223333444455
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHH
Q 048780 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297 (325)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 297 (325)
.++...|++++|...|++.. . +.|+......+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al-~--l~P~~~~~~~l 196 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVI-L--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHT-T--TSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH-H--hCCCHHHHHHH
Confidence 56677899999999999987 3 36776544443
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.76 E-value=9.8e-07 Score=79.69 Aligned_cols=151 Identities=11% Similarity=-0.062 Sum_probs=122.3
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...+..+...+.+.|++++|++.|+...+. .|+ +...|..+-.+|...|++++|.+.
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~--------------------~~~a~~~lg~~~~~~g~~~~A~~~ 489 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAER--VGW--------------------RWRLVWYRAVAELLTGDYDSATKH 489 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCC--------------------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--Ccc--------------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556777888899999999999999999876 333 677888899999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+.. +...|..+-.++.+.|+
T Consensus 490 ~~~al~l~------------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 490 FTEVLDTF------------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGD 549 (681)
T ss_dssp HHHHHHHS------------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhC------------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCC
Confidence 99998862 3467788889999999999999 9999998876533 67889999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCc-HHhHHHHHHHHHccCC
Q 048780 271 LKIAWDIFHMLMQNPGLTPD-VVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 306 (325)
+++|...|++.. . +.|+ ...|..+..++...++
T Consensus 550 ~~~A~~~~~~al-~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 550 RVGAVRTLDEVP-P--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTSC-T--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhhc-c--cCcccHHHHHHHHHHHHccCC
Confidence 999999999876 2 2554 5667777777766444
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.75 E-value=1.8e-06 Score=69.02 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=91.4
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHH----HhcCCHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY----CKDRNVED 186 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~ 186 (325)
+...+..++..+.+.|+.+.|.+.++.|.+. .||... .+..+..-+..++ ...+++.+
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~----------------~~d~~l~~Laea~v~l~~g~~~~q~ 196 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVS----------------GDNEMILNLAESYIKFATNKETATS 196 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHH----------------HHHHHHHHHHHHHHHHHHTCSTTTH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccc----------------cchHHHHHHHHHHHHHHhCCccHHH
Confidence 3456677888999999999999999999876 231000 0123333444442 23448999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC---------CCcCHHH
Q 048780 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK---------CVLTIET 257 (325)
Q Consensus 187 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~~~~~~ 257 (325)
|..+|+++.+. .|+...-..++.++.+.|++++|++.++.+.+.. -+-|+.+
T Consensus 197 A~~~f~El~~~-------------------~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 197 NFYYYEELSQT-------------------FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHTT-------------------SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHHHh-------------------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 99999999765 2221222333448999999999999999776531 1236677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 258 CNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
...+|......|+ +|.++++++.+.
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 7666666666786 889999998844
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=1.3e-07 Score=68.03 Aligned_cols=144 Identities=8% Similarity=-0.077 Sum_probs=108.3
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048780 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199 (325)
Q Consensus 120 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 199 (325)
..+...|++++|++.++..... .|+ +...+-.+-..|.+.|++++|.+.|++..+..
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~--------------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~- 61 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQ--------------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ- 61 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHH--------------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHcChHHHHHHHHHHhccc--Ccc--------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 4456678899999998876543 221 45566678889999999999999999998762
Q ss_pred CCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHH-H
Q 048780 200 RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI-F 278 (325)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~ 278 (325)
+.+..+|..+..+|...|++++|+..|+...+.... +...|..+...|.+.|++++|.+. +
T Consensus 62 -----------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 62 -----------------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 446788999999999999999999999998876532 678899999999999998776554 5
Q ss_pred HHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
+...+.. +-+...|......+...|+
T Consensus 124 ~~al~l~--P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 124 ERAAKLF--PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHS--TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhC--cCCHHHHHHHHHHHHHhCc
Confidence 6655221 2245666666666666654
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.74 E-value=6.9e-07 Score=64.93 Aligned_cols=130 Identities=11% Similarity=0.047 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...+..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|.+.++...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567778888999999999999999988752 3456778888999999999999999999988
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048780 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY--NIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
+.. +.+...+..+..++...|++++|...|+....... .+...+ ......+...|++++|.+.++...
T Consensus 75 ~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 75 ELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 765 33678899999999999999999999999874332 234444 344444778899999999988764
No 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.74 E-value=6.5e-07 Score=72.04 Aligned_cols=176 Identities=10% Similarity=-0.075 Sum_probs=127.3
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH-DVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
.|......|...|++++|.+.|++..+..... +..+ ...+|+.+..+|.+.|++++|...|+
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKA-----------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56667778889999999999999876541110 0001 24678889999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCC-CChHhHHHHHHHHHHc-CCHHHHHHHHHHHhhCCC----CcC-HHHHHHHHHHH
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVP-PDSHVYTTYIDGLYKN-GFVLEAMKVFSAIGNHKC----VLT-IETCNCLIDGL 265 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~----~~~-~~~~~~ll~~~ 265 (325)
+..+.... .+.. .-..+++.+...|... |++++|+..|++..+... .+. ..++..+...+
T Consensus 102 ~Al~l~~~-------------~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 102 NAIQIFTH-------------RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp HHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 88763100 0000 0134678889999996 999999999988765321 111 35788899999
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCcH-----HhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 266 CKIGRLKIAWDIFHMLMQNPGLTPDV-----VTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
...|++++|...|+.......-.+.. ..|..+..++...|++++|...+++..+
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999987432212221 2567777889999999999999988654
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=1e-06 Score=71.47 Aligned_cols=170 Identities=10% Similarity=-0.038 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
.+|+.+...|.+.|++++|+..|++..+.-..... . .....+++.+-..|.. |++++|+..|+
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~--------------~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT--P--------------DTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC--H--------------HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--H--------------HHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 36677788888999999999999887653111100 0 0023567778888888 99999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCcC-HHHHHHHHHHHHh
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCVLT-IETCNCLIDGLCK 267 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~ 267 (325)
+..+.....+.. .....++..+...|...|++++|+..|++..+. +..++ ...+..+..++..
T Consensus 140 ~Al~~~~~~~~~------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 140 QAAAVFENEERL------------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207 (307)
T ss_dssp HHHHHHHHTTCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCh------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 887531000000 001356788899999999999999999887653 22222 2366677778888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCc---HHhHHHHHHHHHccCChHHHHHH
Q 048780 268 IGRLKIAWDIFHMLMQNPGLTPD---VVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
.|++++|...|+... ...-.++ ......++.++ ..|+.+.+.++
T Consensus 208 ~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 208 RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 899999999999876 3211111 22345556655 56776666553
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=7.5e-06 Score=62.42 Aligned_cols=175 Identities=10% Similarity=-0.064 Sum_probs=131.3
Q ss_pred chHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccC
Q 048780 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84 (325)
Q Consensus 5 ~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~ 84 (325)
.+|++.|+...+. -++..+..|-..|...+++++|...|++..+.|
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------------------------------- 48 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------------------------------- 48 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------------------------
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------------------------
Confidence 4578888888875 477888889999999999999999999987643
Q ss_pred ccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccC----cHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhh
Q 048780 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG----KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160 (325)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 160 (325)
+...+..|-..|.. + ++++|+++|+...+.|
T Consensus 49 --------------------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------------------ 83 (212)
T 3rjv_A 49 --------------------------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------------------ 83 (212)
T ss_dssp --------------------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT------------------
T ss_pred --------------------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC------------------
Confidence 12233344445555 5 8999999999987765
Q ss_pred cCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH----
Q 048780 161 SKGCRHDVYSYNILINGYCK----DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK---- 232 (325)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~---- 232 (325)
+...+..|-..|.. .+++++|.++|++..+.|... .+...+..|-..|..
T Consensus 84 ------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~----------------~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 84 ------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD----------------AAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp ------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH----------------HHHHHHHHHHHHHHHTSSS
T ss_pred ------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc----------------chHHHHHHHHHHHHcCCCC
Confidence 45566677777776 789999999999988764210 015667777888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHh
Q 048780 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI-G-----RLKIAWDIFHMLM 282 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~ 282 (325)
.++.++|...|++..+.+ .+...+..|-..|... | ++++|...|+...
T Consensus 142 ~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp SCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 889999999999987762 2444666777777653 3 8999999998877
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=1.7e-07 Score=69.36 Aligned_cols=153 Identities=12% Similarity=0.045 Sum_probs=105.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|+..|+...+.. +.+...+..+...+.+.|++++|...|++..+. .|+...+ .+.. .+.. .....
T Consensus 19 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~-~~~~---~~~~~- 89 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIA-KLEL---HQQAA- 89 (176)
T ss_dssp TTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHH-HHHH---HHHHT-
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHH-HHHH---Hhhcc-
Confidence 488999999999877654 457788999999999999999999999988765 3333222 2210 0000 00000
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 159 (325)
.......+...+. ..| +...+..+...+...|++++|.+.|+++.+....+.
T Consensus 90 --~~~a~~~~~~al~------------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------------- 142 (176)
T 2r5s_A 90 --ESPELKRLEQELA------------ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ------------- 142 (176)
T ss_dssp --SCHHHHHHHHHHH------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT-------------
T ss_pred --cchHHHHHHHHHH------------hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC-------------
Confidence 0001122222221 134 567888889999999999999999999987643221
Q ss_pred hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 160 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
+...+..+...+...|+.++|...|++...
T Consensus 143 -------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 143 -------DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp -------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 355788889999999999999999987754
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=1.3e-06 Score=70.04 Aligned_cols=168 Identities=12% Similarity=0.054 Sum_probs=128.4
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHh
Q 048780 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK 99 (325)
Q Consensus 20 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 99 (325)
+.+...+..+...+.+.|++++|...|++..+.. |
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------------------------P-------------- 148 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-------------------------------N-------------- 148 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------------------------T--------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------------------------------C--------------
Confidence 5566778888888899999999999999987641 1
Q ss_pred cCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 048780 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179 (325)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~ 179 (325)
-+...+..+...+.+.|++++|.+.++..... .|+ ...........+.
T Consensus 149 ----------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~--------------------~~~~~~~~~~~l~ 196 (287)
T 3qou_A 149 ----------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQD--------------------TRYQGLVAQIELL 196 (287)
T ss_dssp ----------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCS--------------------HHHHHHHHHHHHH
T ss_pred ----------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcc--------------------hHHHHHHHHHHHH
Confidence 23446677888999999999999999877554 232 1122222333466
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-cCHHHH
Q 048780 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV-LTIETC 258 (325)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~ 258 (325)
+.++.++|...+++..+. .+.+...+..+...+...|++++|++.|+++.+.... .+...+
T Consensus 197 ~~~~~~~a~~~l~~al~~------------------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE------------------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred hhcccCccHHHHHHHHhc------------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 778888899999888876 2556788889999999999999999999999876432 236789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..+...|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999988887643
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=8.1e-06 Score=62.82 Aligned_cols=203 Identities=8% Similarity=-0.016 Sum_probs=121.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcC
Q 048780 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101 (325)
Q Consensus 22 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 101 (325)
+...+..+...+.+.|++++|...|+++.+.. |+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~------------------------------------------- 37 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFG------------------------------------------- 37 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTS-------------------------------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-------------------------------------------
Confidence 34556667788899999999999999998641 110
Q ss_pred chhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCccc--HHHHHHH--HHhhcCCCCCchhhHHHHHHH
Q 048780 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT--YNTLMDG--FAWWSKGCRHDVYSYNILING 177 (325)
Q Consensus 102 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~--~~~~~~~~~~~~~~~~~li~~ 177 (325)
......+..+..+|.+.|++++|++.|+...+.. |+... ......+ +...... ....|..+-..
T Consensus 38 -------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~~~~~~~---~~~~~~~~~~~ 105 (225)
T 2yhc_A 38 -------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTNMALDDS---ALQGFFGVDRS 105 (225)
T ss_dssp -------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHC---------------
T ss_pred -------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHhhhhh---hhhhhhccchh
Confidence 0012345667788999999999999999998763 33211 1111111 1100000 00011122233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-c-C
Q 048780 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP-DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV-L-T 254 (325)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~-~ 254 (325)
+...|++++|...|+++.+.. |+.............+.. .......+...|.+.|++++|...|+.+.+.... | .
T Consensus 106 ~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 183 (225)
T 2yhc_A 106 DRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT 183 (225)
T ss_dssp --CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence 345789999999999998763 332211110000000000 0011134566788999999999999998875322 1 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
...+..+..+|.+.|++++|.+.++.+..
T Consensus 184 ~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 184 RDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 35788899999999999999999998874
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=2.4e-05 Score=62.96 Aligned_cols=153 Identities=7% Similarity=-0.025 Sum_probs=118.3
Q ss_pred CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCh
Q 048780 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE--DAVSLCREMLSEGIRADA 203 (325)
Q Consensus 126 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~ 203 (325)
+++++++++++.+.+...+ +..+|+.---.+.+.|.++ ++++.++.+.+..
T Consensus 124 ~~~~~EL~~~~~~l~~~pk----------------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d----- 176 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK----------------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD----- 176 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT----------------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-----
Confidence 7889999999999986322 7788888888888888888 9999999999863
Q ss_pred hhHHHHHHHhCCCCCChHhHHHHHHHHHHcCC------HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH-HHHH
Q 048780 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF------VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK-IAWD 276 (325)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~ 276 (325)
+-|..+|+--...+.+.+. ++++++.++.+...... |...|+-+-..+.+.|+.. .+..
T Consensus 177 -------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 177 -------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp -------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred -------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHH
Confidence 3355666655556666665 88999999888877654 8889998888888888744 4566
Q ss_pred HHHHHhhCC-CCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 277 IFHMLMQNP-GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 277 ~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+...+.... .-..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777655211 1134678889999999999999999999999875
No 112
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=2.1e-06 Score=58.77 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=88.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5677888889999999999999999988752 3355677788999999999999999999987
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHH
Q 048780 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (325)
+.. +.+..++..+...|...|++++|...++.+.... +.+...+..+...+.
T Consensus 71 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 71 ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 764 3367788899999999999999999999887432 223444545444443
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=3.4e-06 Score=64.16 Aligned_cols=126 Identities=12% Similarity=-0.081 Sum_probs=101.5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
.+..+...+...|++++|.+.|++.. .| +...|..+..+|...|++++|.+.|++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 62 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DP---------------------HSRICFNIGCMYTILKNMTEAEKAFTR 62 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SC---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CC---------------------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566777888999999999998652 22 556788888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--------------c-CHHHH
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV--------------L-TIETC 258 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--------------~-~~~~~ 258 (325)
..+.. +.+..+|..+..++...|++++|.+.|+...+.... | ....+
T Consensus 63 al~~~------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 63 SINRD------------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124 (213)
T ss_dssp HHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHH
T ss_pred HHHhC------------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHH
Confidence 88752 345677888899999999999999999988764321 1 23678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 048780 259 NCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..+..+|.+.|++++|...|+...
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 888899999999999999999887
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=1.3e-06 Score=65.82 Aligned_cols=164 Identities=9% Similarity=-0.048 Sum_probs=113.4
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 201 (325)
+...|++++|.++++.+... |. .....+..+...+...|++++|...+++..+.....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~---~~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 59 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH---PA-------------------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS 59 (203)
T ss_dssp -----CHHHHHHHHHHHHTS---TT-------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC---hH-------------------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc
Confidence 34679999999966555331 11 146678888899999999999999999887631100
Q ss_pred ChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCc--CHHHHHHHHHHHHhcCChHHHH
Q 048780 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCVL--TIETCNCLIDGLCKIGRLKIAW 275 (325)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~ 275 (325)
+ ..+....++..+...+...|++++|.+.+++..+. +-.| ....+..+...+...|++++|.
T Consensus 60 ~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 60 G------------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp C------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred C------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 0 00113456778889999999999999999877543 2121 2456788888999999999999
Q ss_pred HHHHHHhhC---CCC-CCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 276 DIFHMLMQN---PGL-TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 276 ~~~~~~~~~---~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
..+++.... .+. .....++..+...+...|++++|.+.+++..+
T Consensus 128 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 128 QEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999876521 111 11133457778889999999999999887654
No 115
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=2.7e-06 Score=58.25 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=91.8
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...|..+...+...|++++|.+.|+++.+.. |+ +...+..+...+.+.|++++|...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~ 66 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PN--------------------NAEAWYNLGNAYYKQGDYDEAIEYY 66 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cC--------------------cHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4677888899999999999999999998763 32 5667888899999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 267 (325)
+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+-..+..
T Consensus 67 ~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 67 QKALELD------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHhC------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 9998752 33566778889999999999999999999877642 245555555555443
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=3e-06 Score=61.45 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...+..+...+...|++++|...|+...+.. |+ +...+..+..++...|++++|.+.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~~ 70 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PS--------------------NAIYYGNRSLAYLRTECYGYALGDA 70 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC--------------------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3467778888999999999999999988752 32 5677888889999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHH--HHHHHHHHhcC
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC--NCLIDGLCKIG 269 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~g 269 (325)
++..+.. +.+..+|..+..++...|++++|...+++..+.... +...+ ......+...|
T Consensus 71 ~~a~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~ 131 (166)
T 1a17_A 71 TRAIELD------------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQK 131 (166)
T ss_dssp HHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 9988752 335667888899999999999999999998776432 44455 33444477889
Q ss_pred ChHHHHHHHHHHh
Q 048780 270 RLKIAWDIFHMLM 282 (325)
Q Consensus 270 ~~~~a~~~~~~~~ 282 (325)
++++|...+....
T Consensus 132 ~~~~A~~~~~~~~ 144 (166)
T 1a17_A 132 AFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHcccchH
Confidence 9999999887654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=3.3e-06 Score=64.18 Aligned_cols=129 Identities=11% Similarity=-0.097 Sum_probs=105.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
.+..+...+...|++++|...|++.. .|+..+|..+...+...|++++|.+.++.....
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 66 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 66 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556778889999999999998763 224567777899999999999999999998876
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-------------CC-cHHhHHHHHHHHHccCChHHHHHHHH
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL-------------TP-DVVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
. +.+...|..+..+|...|++++|...|+...+...- .| ....+..+..+|...|++++|.+.++
T Consensus 67 ~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 67 D-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5 336788999999999999999999999998743221 11 23678888899999999999999999
Q ss_pred HHHHc
Q 048780 316 DMEET 320 (325)
Q Consensus 316 ~m~~~ 320 (325)
+..+.
T Consensus 146 ~al~~ 150 (213)
T 1hh8_A 146 LATSM 150 (213)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 98764
No 118
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=3.3e-06 Score=58.35 Aligned_cols=120 Identities=11% Similarity=-0.019 Sum_probs=97.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN------------------PANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 45677888889999999999999999988752 335667888899999999999999999998
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCCh
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (325)
.+.. +.+...+..+...|...|++++|...|+...... +.+...+..+..++.+.|++
T Consensus 73 ~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 73 ICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 7764 2357788999999999999999999999887432 23566777777777777664
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=5.3e-06 Score=66.69 Aligned_cols=178 Identities=8% Similarity=-0.035 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (325)
..+...+..+...|++++|.+.++...+..... ..... ....+..+...+...|++++|...++
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQ--------------FLQWQYYVAAYVLKKVDYEYCILELK 139 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHH--------------HHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHH--------------HHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 345567788899999999999999887753221 10000 11223446667788999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCCc--CHHHHHHHHHHHH
Q 048780 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN----HKCVL--TIETCNCLIDGLC 266 (325)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~--~~~~~~~ll~~~~ 266 (325)
+..+....... . .....+++.+...|...|++++|...+++..+ .+..+ ...++..+...|.
T Consensus 140 ~al~~~~~~~~-~-----------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 140 KLLNQQLTGID-V-----------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp HHHTTCCCSSC-T-----------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCc-h-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 98764221100 0 00134788889999999999999999988762 11111 2258889999999
Q ss_pred hcCChHHHHHHHHHHhhC---CCCCC-cHHhHHHHHHHHHccCChHHH-HHHHHHHH
Q 048780 267 KIGRLKIAWDIFHMLMQN---PGLTP-DVVTYNIMIHGFCKEGQHQKA-NGLLLDME 318 (325)
Q Consensus 267 ~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 318 (325)
+.|++++|...+++...- .+... -..+|..+-..|.+.|++++| ...+++..
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999999999876521 11111 256788888999999999999 77676643
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=3.2e-06 Score=58.37 Aligned_cols=120 Identities=17% Similarity=0.084 Sum_probs=98.2
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...+..+...+...|++++|.+.|+...... |+ +...+..+..++...|++++|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~ 68 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PA--------------------NAVYFCNRAAAYSKLGNYAGAVQD 68 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CC--------------------CHHHHHHHHHHHHHhhchHHHHHH
Confidence 45677888889999999999999999988752 32 566788888999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
++...+.. +.+...+..+...+...|++++|...++...+... .+...+..+..++...|+
T Consensus 69 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 69 CERAICID------------------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcC------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 99998752 33566778889999999999999999999877652 366778888888877776
Q ss_pred h
Q 048780 271 L 271 (325)
Q Consensus 271 ~ 271 (325)
+
T Consensus 130 ~ 130 (131)
T 2vyi_A 130 A 130 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=3.2e-06 Score=58.70 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=94.0
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q 048780 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244 (325)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (325)
+.+...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 74 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN------------------PKDAKLYSNRAACYTKLLEFQLALKDCE 74 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC------------------TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3466788889999999999999999999988752 3356778888999999999999999999
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 245 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
+..+... .+...+..+..++...|++++|...|+...... +.+...+..+...+...|
T Consensus 75 ~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 75 ECIQLEP-TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhCC-CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 9877642 367888999999999999999999999877332 223455556666665544
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=4e-06 Score=58.23 Aligned_cols=120 Identities=18% Similarity=0.108 Sum_probs=96.0
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 109 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
+.+...|..+...+.+.|++++|.+.|++..+. .|+ +...+..+..+|...|++++|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~--------------------~~~~~~~la~~~~~~~~~~~A~ 70 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPK--------------------DAKLYSNRAACYTKLLEFQLAL 70 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTT--------------------CHHHHHHHHHHHTTTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC--------------------cHHHHHHHHHHHHHhccHHHHH
Confidence 445677888999999999999999999998875 232 5677888889999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 268 (325)
+.+++..+.. +.+..++..+..++...|++++|.+.|++..+.... +...+..+..++...
T Consensus 71 ~~~~~a~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 71 KDCEECIQLE------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 9999998752 335677888899999999999999999998765422 445666666666655
Q ss_pred C
Q 048780 269 G 269 (325)
Q Consensus 269 g 269 (325)
|
T Consensus 132 ~ 132 (133)
T 2lni_A 132 Y 132 (133)
T ss_dssp T
T ss_pred c
Confidence 4
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.54 E-value=2.5e-06 Score=69.15 Aligned_cols=176 Identities=7% Similarity=-0.085 Sum_probs=123.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
.|..+...|...|++++|.+.|.+..+....... ...-..+|+.+..+|.+.|++++|...|++
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 101 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS----------------LFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5666778888999999999999987654211000 000245788888999999999999999998
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHhc
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCVL-TIETCNCLIDGLCKI 268 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~ 268 (325)
..+.-..... ...-..++..+...|.. |++++|+..+++..+. +..+ ...++..+...|.+.
T Consensus 102 Al~l~~~~g~------------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 168 (307)
T 2ifu_A 102 ASVMYVENGT------------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ 168 (307)
T ss_dssp HHHHHHTTTC------------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC------------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc
Confidence 7653100000 00013467777888888 9999999999887543 2111 146788899999999
Q ss_pred CChHHHHHHHHHHhhC---CCCCCc-HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 269 GRLKIAWDIFHMLMQN---PGLTPD-VVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 269 g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
|++++|...|+..... .+..+. ...+..+...+...|++++|...+++..
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 169 QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999987632 111122 2356667777888899999999999876
No 124
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.52 E-value=3.6e-05 Score=68.89 Aligned_cols=181 Identities=13% Similarity=0.059 Sum_probs=123.2
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC---------CCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhc
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV---------NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (325)
+...|-..+...-+.|+++.|.++|+.+..... .|+.. .-+..+. .....+|...+....+.
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~---~~~~~~~------~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE---SAINQLK------SKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH---HHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch---hhhhhhc------cchHHHHHHHHHHHHHc
Confidence 344566677777788999999999998876410 12100 0000000 00234688888888889
Q ss_pred CCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCcCHHHHH
Q 048780 182 RNVEDAVSLCREMLSE-GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN-GFVLEAMKVFSAIGNHKCVLTIETCN 259 (325)
Q Consensus 182 g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~ 259 (325)
|..+.|..+|....+. +. ....+|...+..-.+. ++.+.|..+|+...+. ..-+...+.
T Consensus 448 ~~l~~AR~vf~~A~~~~~~------------------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~ 508 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKL------------------VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYIN 508 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGG------------------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC------------------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHH
Confidence 9999999999999875 11 1122232222222333 4589999999988775 233566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC--CcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLT--PDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..+......|+.+.|..+|+.... .... -....|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~-~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSID-KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTT-TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888889999999999999873 3211 14567888888888999999999999999875
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.52 E-value=3.7e-06 Score=60.27 Aligned_cols=118 Identities=14% Similarity=0.002 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...+..+-..|.+.|++++|++.|++..+. .|+ +..+|..+-.+|.+.|++++|...|
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~--------------------~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINV--QER--------------------DPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------CHHHHHHHHHHHHHcCchHHHHHHH
Confidence 345667888999999999999999999876 343 7788999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHH-HHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV-FSAIGNHKCVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 270 (325)
++..+.. +.+..+|..+...|.+.|+.++|.+. ++...+... -++.+|...-..+...|+
T Consensus 89 ~~al~~~------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 89 RRSVELN------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHC------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhC------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 9998852 34677888889999999999877665 577766542 266777777666666664
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=4.7e-06 Score=59.71 Aligned_cols=104 Identities=8% Similarity=-0.057 Sum_probs=86.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...+..+-..+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------------------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------------------FYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45567778888999999999999999998862 446788888999999999999999999999
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHH
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 292 (325)
.+.... +...|..+-.+|...|++++|...|+...+. .|+..
T Consensus 97 l~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l---~~~~~ 138 (151)
T 3gyz_A 97 FALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQH---SNDEK 138 (151)
T ss_dssp HHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHH
T ss_pred HhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCHH
Confidence 876533 6778889999999999999999999988732 45543
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.47 E-value=1e-05 Score=55.98 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=46.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
.+...-..|.+.|++++|++.|++..+. .|+ +...|..+..+|.+.|++++|++.|++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~--------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPE--------------------NAILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------CHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 3444445555555555555555555443 121 344445555555555555555555555
Q ss_pred HHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 194 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
..+.. +.+..+|..+..++...|++++|.+.|+...+
T Consensus 73 al~~~------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 73 CIRLD------------------SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhh------------------hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54431 22334444445555555555555555554444
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=3.2e-06 Score=62.30 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 201 (325)
+...|++++|...++...+.. |+ +...|..+..+|...|++++|...|++..+..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 74 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQ--------------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--- 74 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CS--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---
T ss_pred hhhccCHHHHHHHHHHHHHhC--CC--------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 355788889999998877652 32 56788889999999999999999999988752
Q ss_pred ChhhHHHHHHHhCCCCCChHhHHHHHHH-HHHcCCH--HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 048780 202 DATTYNTLFMAINNVPPDSHVYTTYIDG-LYKNGFV--LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278 (325)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (325)
+.+...+..+..+ +...|++ ++|...++...+... -+...+..+...|...|++++|...|
T Consensus 75 ---------------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 75 ---------------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp ---------------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3355667777888 7788998 999999999887653 35778888999999999999999999
Q ss_pred HHHhhC
Q 048780 279 HMLMQN 284 (325)
Q Consensus 279 ~~~~~~ 284 (325)
+.....
T Consensus 139 ~~al~~ 144 (177)
T 2e2e_A 139 QKVMDL 144 (177)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 998744
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=7.1e-06 Score=67.37 Aligned_cols=143 Identities=8% Similarity=-0.086 Sum_probs=108.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA---TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (325)
+...+..+-..|.+.|++++|...|++..+....... .....+ .+....+|..+..+|.+.|++++|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~------~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA------QALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4557888889999999999999999999875311100 000000 0001467888899999999999999999
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHH-HHHHHHHH
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA-NGLLLDME 318 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 318 (325)
++..+... .+...|..+-.+|...|++++|...|+...+.. +-+...+..+..++.+.|+.++| ...++.|.
T Consensus 220 ~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 220 NKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987653 378899999999999999999999999987432 33567888888899999999988 45666664
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.45 E-value=2.6e-06 Score=61.05 Aligned_cols=100 Identities=12% Similarity=-0.007 Sum_probs=85.8
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
+...+..+...+.+.|++++|...|+....... -+...|..+-.+|...|++++|...|++..... +-+...|..+-
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHH
Confidence 455677888899999999999999999988763 378899999999999999999999999987432 23567888999
Q ss_pred HHHHccCChHHHHHHHHHHHHcC
Q 048780 299 HGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
.+|.+.|++++|...|++..+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999988753
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.45 E-value=1.3e-05 Score=55.54 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...+...-..|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.++...
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD------------------PENAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 3456677788889999999999999888752 4466778888899999999999999998887
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
+.+. .+...|..+-.+|...|++++|.+.|+...+
T Consensus 75 ~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 75 RLDS-KFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhhh-hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7653 3677888889999999999999999988773
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=1.1e-05 Score=57.61 Aligned_cols=99 Identities=13% Similarity=-0.044 Sum_probs=83.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD------------------HYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45567778888999999999999999988752 446778888899999999999999999998
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
..... -+...+..+-.+|...|++++|...|+...+.
T Consensus 82 l~l~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 82 AVMDI-XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87653 36678888999999999999999999988743
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=2.5e-06 Score=62.87 Aligned_cols=121 Identities=7% Similarity=0.051 Sum_probs=96.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 048780 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258 (325)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 258 (325)
...|++++|...++...+.. +.+...|..+...|...|++++|...|+...+... .+...+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 81 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN------------------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELY 81 (177)
T ss_dssp C-----CCCCHHHHHHHHHC------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHH
T ss_pred hhccCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHH
Confidence 45788999999998887752 44667888889999999999999999999877652 367788
Q ss_pred HHHHHH-HHhcCCh--HHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 259 NCLIDG-LCKIGRL--KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 259 ~~ll~~-~~~~g~~--~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
..+..+ |...|++ ++|...++...... +.+...+..+...|...|++++|...+++..+.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888 7889998 99999999887432 335677888899999999999999999998765
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=3.4e-05 Score=51.95 Aligned_cols=97 Identities=15% Similarity=0.029 Sum_probs=80.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
....+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34567778888999999999999999988752 335667788888999999999999999988
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.+... .+...+..+..++...|++++|...++...
T Consensus 65 ~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 65 VDLKP-DWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77642 367788889999999999999999999887
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=1.1e-05 Score=58.64 Aligned_cols=99 Identities=11% Similarity=-0.013 Sum_probs=85.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|+..+++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA------------------PANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56678888899999999999999999998762 346778888899999999999999999999
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
.+... -+...|..+-.+|...|++++|...|+...+.
T Consensus 72 l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 72 TVVDP-KYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 87753 36889999999999999999999999988743
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.40 E-value=1e-05 Score=66.37 Aligned_cols=144 Identities=10% Similarity=-0.036 Sum_probs=109.5
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCccc--HHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT--YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
+...|..+-..|.+.|++++|++.|++..+......... ...-+.. .....|..+..+|.+.|++++|.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~---------~~~~~~~nla~~~~~~g~~~~A~ 216 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA---------LRLASHLNLAMCHLKLQAFSAAI 216 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHH---------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHH---------HHHHHHHHHHHHHHHcCCHHHHH
Confidence 355778888899999999999999999887632110000 0000000 01467888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 268 (325)
..|++..+.. +.+..+|..+..+|...|++++|...|++..+... -+...+..+..++.+.
T Consensus 217 ~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 217 ESCNKALELD------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH
Confidence 9999998862 44677888889999999999999999999987653 3677889999999999
Q ss_pred CChHHH-HHHHHHHh
Q 048780 269 GRLKIA-WDIFHMLM 282 (325)
Q Consensus 269 g~~~~a-~~~~~~~~ 282 (325)
|+.++| ..++..|.
T Consensus 278 ~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 278 RRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988 44565553
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=0.00017 Score=57.75 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=98.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
..+...+...|++++|++.+++..+....... . .....+|+.+...|...|++++|...|++..
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~---------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGID-V---------------YQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC-T---------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc-h---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556678889999999999998865322110 0 0014478889999999999999999999887
Q ss_pred HcC-CCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCc-CHHHHHHHHHHHHhcC
Q 048780 196 SEG-IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK----CVL-TIETCNCLIDGLCKIG 269 (325)
Q Consensus 196 ~~g-~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~-~~~~~~~ll~~~~~~g 269 (325)
+.- ..|+... ....++..+...|...|++++|++.+++..+.. ... -..+|..+-..|.+.|
T Consensus 183 ~~~~~~~~~~~------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 183 KQLEALHDNEE------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHSCCCHH------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcccc------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 320 0111000 012577888999999999999999998875431 111 2668889999999999
Q ss_pred ChHHH-HHHHHHHh
Q 048780 270 RLKIA-WDIFHMLM 282 (325)
Q Consensus 270 ~~~~a-~~~~~~~~ 282 (325)
++++| ...++...
T Consensus 251 ~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 251 YEEAEIEDAYKKAS 264 (293)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 99999 77676543
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=1.8e-05 Score=59.47 Aligned_cols=169 Identities=11% Similarity=-0.091 Sum_probs=114.5
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|.++++.+.. .......++..+...+...|++++|...|++..+.. .+.+
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------~~~~- 60 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQA----------------------QKSG- 60 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------HTTC-
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH----------------------HHcC-
Confidence 4889999996666644 223467789999999999999999999999887521 0000
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHh
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV-NPNTCTYNTLMDGFAW 159 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~ 159 (325)
+. ......+..+-..+...|++++|.+.+++..+.-- .++..
T Consensus 61 -----~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------- 103 (203)
T 3gw4_A 61 -----DH---------------------TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP----------- 103 (203)
T ss_dssp -----CH---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----------
T ss_pred -----Cc---------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH-----------
Confidence 00 11234567788889999999999999988765411 11000
Q ss_pred hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHH
Q 048780 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR-ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238 (325)
Q Consensus 160 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (325)
......+..+...+...|++++|...+++..+.... .+.. .-..++..+...+...|++++
T Consensus 104 -----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 104 -----LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV-------------AIACAFRGLGDLAQQEKNLLE 165 (203)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-------------HHHHHHHHHHHHHHHTTCHHH
T ss_pred -----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH-------------HHHHHHHHHHHHHHHCcCHHH
Confidence 002445777888999999999999999988753100 0100 012345777888999999999
Q ss_pred HHHHHHHHhh
Q 048780 239 AMKVFSAIGN 248 (325)
Q Consensus 239 a~~~~~~m~~ 248 (325)
|.+.+++..+
T Consensus 166 A~~~~~~al~ 175 (203)
T 3gw4_A 166 AQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=1.2e-05 Score=53.75 Aligned_cols=102 Identities=11% Similarity=-0.020 Sum_probs=85.5
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++...+...-..+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 456677888899999999999999999877653 3677889999999999999999999999874421111578889999
Q ss_pred HHHHcc-CChHHHHHHHHHHHHcC
Q 048780 299 HGFCKE-GQHQKANGLLLDMEETG 321 (325)
Q Consensus 299 ~~~~~~-g~~~~a~~~~~~m~~~g 321 (325)
..+... |++++|.+.+++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999998764
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=7.6e-06 Score=65.38 Aligned_cols=165 Identities=15% Similarity=0.000 Sum_probs=110.2
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
+...+..+...+.+.|++++|...|+...+. .|+ +...|..+..+|.+.|++++|...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~--------------------~~~~~~~la~~~~~~~~~~~A~~~ 60 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPL--------------------VAVYYTNRALCYLKMQQPEQALAD 60 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC--------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc--------------------cHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4556777888889999999999999988876 332 567788888899999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CcCHHHHH-------
Q 048780 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC----VLTIETCN------- 259 (325)
Q Consensus 191 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~------- 259 (325)
+++..+.. +.+...+..+..++...|++++|...|+...+... ......+.
T Consensus 61 ~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 122 (281)
T 2c2l_A 61 CRRALELD------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122 (281)
T ss_dssp HHHHTTSC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHH
Confidence 99887652 33567778888999999999999999887654321 00111111
Q ss_pred ------------------HHHHHHHhcCChHHHHHHHHHHhhCCCCCCcH-HhHHHHHHHHHcc-CChHHHHHHHHHHHH
Q 048780 260 ------------------CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV-VTYNIMIHGFCKE-GQHQKANGLLLDMEE 319 (325)
Q Consensus 260 ------------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 319 (325)
..+..+ ..|+.++|.+.++... . ..|+. .....+-..+.+. +.+++|.++|++..+
T Consensus 123 ~~~~~~~~~~~~~~~~i~~~l~~l-~~~~~~~A~~~~~~al-~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 123 KRWNSIEERRIHQESELHSYLTRL-IAAERERELEECQRNH-E--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTCCCCCCHHHHHHHHH-HHHHHHHHHTTTSGGG-T--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHhhh-c--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 111111 2456666766666554 2 24443 3333333334444 567788888887664
No 141
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.35 E-value=0.001 Score=57.52 Aligned_cols=180 Identities=16% Similarity=0.040 Sum_probs=119.4
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-------h----hc-C--------CCCCchh
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------W----WS-K--------GCRHDVY 169 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~----~~-~--------~~~~~~~ 169 (325)
.+...|...+..+.+.|+++.|.++|++.... |....+......+. . .. . .......
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 34566777777888899999999999999988 55443322111110 0 00 0 0011234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHH--HHHHHHHHcCCHHHHHHHHHHHh
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT--TYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
.|...+....+.+.++.|..+|+.. +. |. .+..+|. +.+.... .++.+.|..+|+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~---------------~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al 347 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN---EG---------------VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGL 347 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC---------------CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC---------------CChHHHHHHHHHHHHH-CCChHHHHHHHHHHH
Confidence 5666777777778899999999988 32 11 1112222 2233322 336999999999887
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+.-. -++..+...++...+.|+.+.|..+|+... .....|...+.-=...|+.+.+..++++...
T Consensus 348 ~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6431 234556677787788999999999999874 2577788888877788999999998888764
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.33 E-value=4.9e-05 Score=60.97 Aligned_cols=137 Identities=9% Similarity=0.022 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 048780 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250 (325)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 250 (325)
+...+..+...|++++|..++++..+.... +... ... ...+..+...+...+++++|+..++...+..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~-~~~----------~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEF-QQF----------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHH-HHH----------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccC-ChHH-HHH----------HHHHHHHHHHHHcccCHHHHHHHHHHHHHHh
Confidence 334577889999999999999998874211 1100 000 1233446667777889999999999987632
Q ss_pred CC-cC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC---C-CCCCc-HHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 251 CV-LT----IETCNCLIDGLCKIGRLKIAWDIFHMLMQN---P-GLTPD-VVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 251 ~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.. ++ ..+++.+...|...|++++|...|+...+. . +..+. ..++..+...|.+.|++++|...+++..+
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22 22 346899999999999999999999987621 1 22222 34778888999999999999999988654
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=5.6e-05 Score=50.88 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...+..+...+...|++++|.+.|+...... |+ +...+..+..++...|++++|...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PH--------------------NHVLYSNRSAAYAKKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CC--------------------cHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4567778889999999999999999988752 32 5667888888999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 261 (325)
++..+.. +.+...+..+..++...|++++|.+.++...+.+.. +...+..+
T Consensus 62 ~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 112 (118)
T 1elw_A 62 CKTVDLK------------------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGL 112 (118)
T ss_dssp HHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHHhC------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 9998752 335667888899999999999999999998876422 44444433
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.32 E-value=1.9e-05 Score=55.90 Aligned_cols=98 Identities=11% Similarity=-0.055 Sum_probs=82.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD------------------HYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456667778899999999999999988762 446777888899999999999999999998
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
..... -+...+..+..+|...|++++|...|+....
T Consensus 79 l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 79 ALMDI-NEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87653 3667888899999999999999999998763
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=0.0004 Score=56.64 Aligned_cols=165 Identities=10% Similarity=0.016 Sum_probs=108.7
Q ss_pred hHHHHHHHHHcc-C-cHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHH------
Q 048780 114 TLNVMTDNLSKD-G-KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE------ 185 (325)
Q Consensus 114 ~~~~ll~~~~~~-g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------ 185 (325)
.|+.--..+.+. + ++++++++++.+.+.. |. |..+|+.-.-...+.|.++
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d--pk--------------------Ny~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPD--PK--------------------NYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC--TT--------------------CHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--CC--------------------CHHHHHHHHHHHHHhccccccchhh
Confidence 343333333333 4 6789999999888653 22 6666766655555555555
Q ss_pred --HHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCC-------HHHHHHHHHHHhhCCCCcCHH
Q 048780 186 --DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF-------VLEAMKVFSAIGNHKCVLTIE 256 (325)
Q Consensus 186 --~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~ 256 (325)
++++.++++.+.. +-|..+|+-....+.+.+. ++++++.+++....... |..
T Consensus 183 ~~eELe~~~k~I~~d------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~S 243 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVS 243 (349)
T ss_dssp HHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHH
Confidence 8999999998863 3356667666666666665 68888888888776543 788
Q ss_pred HHHHHHHHHHhcCCh--------------------HHHHHHHHHHhhCC----CCCCcHHhHHHHHHHHHccCChHHHHH
Q 048780 257 TCNCLIDGLCKIGRL--------------------KIAWDIFHMLMQNP----GLTPDVVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 257 ~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (325)
.|+-+-..+.+.|.. .........+.... .-.++...+..|...|...|+.++|.+
T Consensus 244 aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 244 AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence 888776667666653 33444444433111 113678888999999999999999999
Q ss_pred HHHHHHH
Q 048780 313 LLLDMEE 319 (325)
Q Consensus 313 ~~~~m~~ 319 (325)
+++.+.+
T Consensus 324 ~~~~l~~ 330 (349)
T 3q7a_A 324 VFEKLSS 330 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=2.3e-05 Score=52.31 Aligned_cols=98 Identities=15% Similarity=0.036 Sum_probs=83.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...+..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD------------------PEESKYWLMKGKALYNLERYEEAVDCYNYV 66 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC------------------cCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45667778889999999999999999998752 345667788899999999999999999998
Q ss_pred hhCCCCc--CHHHHHHHHHHHHhc-CChHHHHHHHHHHhh
Q 048780 247 GNHKCVL--TIETCNCLIDGLCKI-GRLKIAWDIFHMLMQ 283 (325)
Q Consensus 247 ~~~~~~~--~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~ 283 (325)
.+.. .. +...+..+..++... |++++|.+.++....
T Consensus 67 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 67 INVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 8764 22 578899999999999 999999999999874
No 147
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.30 E-value=0.00013 Score=65.33 Aligned_cols=237 Identities=10% Similarity=0.028 Sum_probs=155.5
Q ss_pred chHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCC-chhHHHHH---------HHHHHHHH
Q 048780 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAA-RLFKKLNVFCCDPN-VITFNTLA---------LVALNLFE 73 (325)
Q Consensus 5 ~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~g~~~~-~~~~~~l~---------~~a~~~~~ 73 (325)
+.+..+|++..... +.+...|-.....+.+.|+.++|. .+|++.... .|. ...|-..+ +.|.++|+
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34567888887764 557888988888888999998996 999998764 343 33333332 66777777
Q ss_pred HHHHhcCCc------cCcc-HHHHHHHHHHHHhcCchhhcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-CCC
Q 048780 74 EMVNEFGVI------CKPD-VVTCTNIIDGLCKDGFMMDQGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQR-DVN 144 (325)
Q Consensus 74 ~~~~~~~~~------~~~~-~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~ 144 (325)
.+....... -.|+ ...... ... ....|...+....+.|.++.|.++|+...+. +..
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~---------------~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQ---------------LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhh---------------hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 776532000 0010 000000 000 1236777788888889999999999998876 211
Q ss_pred CCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHH
Q 048780 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224 (325)
Q Consensus 145 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~ 224 (325)
. +......+.+.-. ..++.+.|..+|+...+. .+.+...|.
T Consensus 468 ~--------------------~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~------------------~p~~~~~w~ 508 (679)
T 4e6h_A 468 T--------------------PDIYLENAYIEYH-ISKDTKTACKVLELGLKY------------------FATDGEYIN 508 (679)
T ss_dssp C--------------------THHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH------------------HTTCHHHHH
T ss_pred C--------------------hHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH------------------CCCchHHHH
Confidence 0 1222222333322 235599999999999876 344566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH
Q 048780 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVL--TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301 (325)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 301 (325)
..++.....|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.++.+.+.+. .|+......+++=|
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHh
Confidence 77888888999999999999988765322 4568888898888999999999999998843 34433333444333
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.29 E-value=1.7e-05 Score=56.57 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=83.5
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
+...+..+...+...|++++|...|+....... .+...|..+-.+|...|++++|...|+...... +.+...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 445677778899999999999999999887653 378889999999999999999999999987432 33567788899
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 048780 299 HGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+|...|++++|...+++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=3.1e-05 Score=53.30 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=80.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...|..+-..+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..++...
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA------------------PEDARGYSNRAAALAKLMSFPEAIADCNKAI 65 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566777788889999999999999988752 3456778888999999999999999999888
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 248 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
+... -+...|..+..++...|++++|...|+...
T Consensus 66 ~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 66 EKDP-NFVRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCC-CcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 7653 367788889999999999999999998876
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.28 E-value=2.6e-05 Score=58.58 Aligned_cols=147 Identities=13% Similarity=-0.011 Sum_probs=97.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIR-ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
...+..+-..+.+.|++++|...|++..+.... |+.... .+ .. ........+|..+..+|...|++++|+..++..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-IL-LD-KKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HH-HH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hH-HH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345667778889999999999999999875211 100000 00 00 000001267788899999999999999999998
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHH-HHHHHHHHc
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN-GLLLDMEET 320 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 320 (325)
.+.. +.+...+..+..+|...|++++|...|+...... +-+...+..+...+...++.+++. ..+..|...
T Consensus 115 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 115 LKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8764 3467889999999999999999999999887332 235667777777777777776666 455555443
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1.2e-05 Score=55.46 Aligned_cols=113 Identities=9% Similarity=-0.006 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD------------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4567778889999999999999999998752 3356677888999999999999999999887
Q ss_pred hCCC--CcC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH
Q 048780 248 NHKC--VLT----IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301 (325)
Q Consensus 248 ~~~~--~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 301 (325)
.... .++ ..++..+..+|...|++++|.+.|+..... .|+...+..+....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 6532 122 678888999999999999999999988742 45655555544433
No 152
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.28 E-value=0.00038 Score=55.95 Aligned_cols=223 Identities=4% Similarity=0.002 Sum_probs=154.7
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCC
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEG--RILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~ 81 (325)
.++|+.+++.++..+ +-+..+|+.--..+...| +++++++.++.+.... +-+...|+.-- .++..+....+.
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~----~iL~~~~~~l~~ 122 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQ----LIIGQIMELNNN 122 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHH----HHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHH----HHHHHHHHhccc
Confidence 468999999999886 456677898888899999 9999999999998763 23444454432 111111111100
Q ss_pred --ccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHH--HHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048780 82 --ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME--EANCLLEVMIQRDVNPNTCTYNTLMDGF 157 (325)
Q Consensus 82 --~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 157 (325)
...-....+..++.. -+.+...|+.--..+.+.|.++ ++++.++.+.+....
T Consensus 123 ~~~~~~EL~~~~~~l~~-----------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~------------- 178 (306)
T 3dra_A 123 DFDPYREFDILEAMLSS-----------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK------------- 178 (306)
T ss_dssp CCCTHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-------------
T ss_pred cCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-------------
Confidence 000111122222211 1446667777777777778877 999999999987433
Q ss_pred HhhcCCCCCchhhHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHH
Q 048780 158 AWWSKGCRHDVYSYNILINGYCKDRN------VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231 (325)
Q Consensus 158 ~~~~~~~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~ 231 (325)
|...|+.........+. ++++++.++.+.... +.|..+|+-+-..+.
T Consensus 179 ---------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~------------------p~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 179 ---------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC------------------PQNPSTWNYLLGIHE 231 (306)
T ss_dssp ---------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC------------------SSCHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC------------------CCCccHHHHHHHHHH
Confidence 67778777777777676 899999999888763 557788888888888
Q ss_pred HcCCHHH-HHHHHHHHhhCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 232 KNGFVLE-AMKVFSAIGNHK--CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 232 ~~~~~~~-a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
+.|+... +..+...+.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 232 RFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8887444 555667665543 134788999999999999999999999999874
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.2e-05 Score=54.08 Aligned_cols=98 Identities=9% Similarity=-0.072 Sum_probs=83.0
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHH
Q 048780 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299 (325)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 299 (325)
...|..+...+.+.|++++|...|++..+... .+...|..+..+|.+.|++++|...++...+.. +.+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 34566778889999999999999999887653 378899999999999999999999999987432 335778889999
Q ss_pred HHHccCChHHHHHHHHHHHHc
Q 048780 300 GFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~ 320 (325)
++...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=3.4e-05 Score=53.84 Aligned_cols=100 Identities=10% Similarity=-0.071 Sum_probs=85.5
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHH
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 296 (325)
+.+...|..+...+...|++++|...|+....... .+...|..+..++...|++++|...++...... +.+...|..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHH
Confidence 34667788889999999999999999999877653 367889999999999999999999999887432 335778889
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 048780 297 MIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
+..+|...|++++|...+++..+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=2.3e-05 Score=55.44 Aligned_cols=98 Identities=11% Similarity=-0.064 Sum_probs=82.0
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHH
Q 048780 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299 (325)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 299 (325)
...+..+...+.+.|++++|...|+....... .+...|..+-.+|...|++++|...|+...... +-+...|..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHH
Confidence 44566678889999999999999999887653 378889999999999999999999999987432 335667888889
Q ss_pred HHHccCChHHHHHHHHHHHHc
Q 048780 300 GFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~ 320 (325)
+|...|++++|.+.++...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987653
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=4.5e-05 Score=53.22 Aligned_cols=98 Identities=10% Similarity=-0.048 Sum_probs=85.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 048780 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
.+...|..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|...++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------PLVAVYYTNRALCYLKMQQPEQALADCRR 68 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC------------------cCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 367788889999999999999999999988762 34567788889999999999999999999
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 246 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
..+... .+...+..+..+|...|++++|...|+...
T Consensus 69 al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 69 ALELDG-QSVKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCc-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 887653 367889999999999999999999999876
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=2.7e-05 Score=56.51 Aligned_cols=99 Identities=6% Similarity=-0.120 Sum_probs=84.9
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
+...|..+...+...|++++|++.|++..+... -+...|..+..+|.+.|++++|...|+...... +-+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 456678888999999999999999999887653 378899999999999999999999999987432 33578889999
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 048780 299 HGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=0.00011 Score=51.90 Aligned_cols=102 Identities=15% Similarity=-0.040 Sum_probs=82.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 048780 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
.+...+..+...+...|++++|.+.|++..+.. |+... ....|..+..+|...|++++|...++.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQD-------------QAVLHRNRAACHLKLEDYDKAETEASK 90 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchH-------------HHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 356778888899999999999999999998752 22100 046677788899999999999999998
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 246 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
..+... .+...+..+..+|...|++++|...|+....
T Consensus 91 ~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 91 AIEKDG-GDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhCc-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877642 3677888899999999999999999998873
No 159
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.21 E-value=0.00042 Score=59.90 Aligned_cols=145 Identities=10% Similarity=-0.022 Sum_probs=95.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHH------------hC-----------CCCCChH
Q 048780 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN-TLFMA------------IN-----------NVPPDSH 221 (325)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~------------~~-----------~~~~~~~ 221 (325)
.+...|-..+.-+.+.|++++|.++|++.... |...... ..... .. .......
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 34677888888888999999999999999987 4333222 11111 00 0011224
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK-IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
+|-..+....+.+..+.|..+|+.....+ .+...|......-.. .++.+.|..+|+...+..+- +...|...++-
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 56677777777888999999999883222 344455432222222 34799999999988754432 33456667777
Q ss_pred HHccCChHHHHHHHHHH
Q 048780 301 FCKEGQHQKANGLLLDM 317 (325)
Q Consensus 301 ~~~~g~~~~a~~~~~~m 317 (325)
..+.|+.+.|..+++..
T Consensus 364 e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 78889999999888874
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.20 E-value=6.3e-05 Score=51.99 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...+..+-..+.+.|++++|++.|++..+.. +.+..+|..+..+|...|++++|++.++...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~------------------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD------------------PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456778888999999999999999988752 3456778888999999999999999998876
Q ss_pred hCCC--CcC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 248 NHKC--VLT----IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 248 ~~~~--~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
+... .++ ..+|..+-.++...|++++|.+.|+.... ..|+.....
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~~~~~~~~ 120 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS---EFRDPELVK 120 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCCHHHHH
T ss_pred HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcCHHHHH
Confidence 5321 111 24677778888899999999999988763 245655443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=0.00013 Score=51.50 Aligned_cols=115 Identities=13% Similarity=-0.024 Sum_probs=88.5
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
.+...+..+...+...|++++|.+.|+...+.. |+... ....|..+..+|...|++++|..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~ 86 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQD-----------------QAVLHRNRAACHLKLEDYDKAET 86 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHH-----------------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchH-----------------HHHHHHHHHHHHHHHccHHHHHH
Confidence 356778888999999999999999999988753 32100 15677888889999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 262 (325)
.+++..+.. +.+...+..+..++...|++++|...|++..+.... +...+..+.
T Consensus 87 ~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 87 EASKAIEKD------------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHT------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHhhC------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 999988752 335667788899999999999999999998775422 344444333
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=3.5e-05 Score=53.02 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
...|..+...+...|++++|...|+...+.. |+ +...+..+...|...|++++|...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~ 61 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PT--------------------NMTYITNQAAVYFEKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc--------------------cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3467778889999999999999999988763 32 5667888889999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPD----SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 264 (325)
+...+.... ..++ ..++..+..++...|++++|.+.|+...+.. |+......+-..
T Consensus 62 ~~~~~~~~~---------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 62 EKAIEVGRE---------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHH---------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHhhccc---------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 998875210 0111 5567788999999999999999999988754 465555544443
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.15 E-value=5.8e-05 Score=59.51 Aligned_cols=141 Identities=10% Similarity=-0.028 Sum_probs=98.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048780 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194 (325)
Q Consensus 115 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 194 (325)
+-.....+...|++++|.++|+.+...+ |+ +. ....+-..+.+.+++++|+..|+..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~--------------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SE--------------------HL-VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CH--------------------HH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc--------------------hH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3445667888999999999998776542 31 22 4444555888999999999999744
Q ss_pred HHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCChH
Q 048780 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 195 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~ 272 (325)
.+. |+... ...++..+-.++...|++++|+..|++.......|. .......-.++.+.|+.+
T Consensus 162 ~~~---~d~~~-------------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d 225 (282)
T 4f3v_A 162 GKW---PDKFL-------------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES 225 (282)
T ss_dssp GGC---SCHHH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred hcc---CCccc-------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH
Confidence 332 11110 123567778889999999999999999875433253 345666777888999999
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHH
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIM 297 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~l 297 (325)
+|..+|+++... .|+...+..|
T Consensus 226 eA~~~l~~a~a~---~P~~~~~~aL 247 (282)
T 4f3v_A 226 AAVALLEWLQTT---HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHH---SCCHHHHHHH
T ss_pred HHHHHHHHHHhc---CCcHHHHHHH
Confidence 999999998732 5554444444
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.15 E-value=7.2e-05 Score=56.11 Aligned_cols=143 Identities=10% Similarity=0.022 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCcccH--HHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTY--NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~--~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
...+..+...+.+.|++++|++.|++..+.... |+.... ..-... .....|..+..+|.+.|++++|.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~la~~~~~~~~~~~A~ 108 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN---------IEISCNLNLATCYNKNKDYPKAI 108 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH---------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH---------HHHHHHHHHHHHHHHhcCHHHHH
Confidence 345677788889999999999999999875211 110000 000000 01367788889999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 268 (325)
..++...+.. +.+..++..+..+|...|++++|.+.|+...+... -+...+..+..++...
T Consensus 109 ~~~~~al~~~------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 109 DHASKVLKID------------------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHS------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC------------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHH
Confidence 9999998752 34567788889999999999999999999877642 2667778887777777
Q ss_pred CChHHHH-HHHHHHh
Q 048780 269 GRLKIAW-DIFHMLM 282 (325)
Q Consensus 269 g~~~~a~-~~~~~~~ 282 (325)
++.+++. ..+..+.
T Consensus 170 ~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 170 KEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHC----------
T ss_pred HHHHHHHHHHHHHHh
Confidence 7666665 4444443
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.0014 Score=55.50 Aligned_cols=194 Identities=9% Similarity=-0.095 Sum_probs=123.5
Q ss_pred CCCcchHHHHHHHHHhcCCCCc-h---------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCchhHH-
Q 048780 1 MGRASGGFVLLGRILMSCFTPN-M---------------VTFNSLIKGLCTEGRILEAARLFKKLNVF-CCDPNVITFN- 62 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~-~---------------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~- 62 (325)
.|++++|++.|..+.+...... . .++..+...|...|++++|.+.+..+... +..++..+-.
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3789999999999987642211 1 23778999999999999999999988653 1111211111
Q ss_pred --HHH----------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCC-ChhhHHHHHHHHHccCcHH
Q 048780 63 --TLA----------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP-DVVTLNVMTDNLSKDGKME 129 (325)
Q Consensus 63 --~l~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~ 129 (325)
..+ +.+.++++...... . ..+..+ -..++..+...|...|+++
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------~------~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFA------------------K------REKRVFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHH------------------H------HSSCCSSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHH------------------H------HhCccHHHHHHHHHHHHHHHHccChH
Confidence 111 33333333332211 1 111122 2456788899999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 048780 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209 (325)
Q Consensus 130 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 209 (325)
+|..++++....-...+. ......++..++..|...|++++|..+++........
T Consensus 153 ~A~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--------- 207 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDD----------------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS--------- 207 (434)
T ss_dssp HHHHHHHHHHHHHTTSSC----------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccc----------------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc---------
Confidence 999999987754222211 1113457888999999999999999999887653100
Q ss_pred HHHhCCCCCC--hHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 210 FMAINNVPPD--SHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 210 l~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
...++. ...+..+...+...+++++|...|.+..
T Consensus 208 ----~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 208 ----IYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp ----SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 001111 2345666777788899999988776654
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=4.3e-05 Score=54.73 Aligned_cols=139 Identities=14% Similarity=0.019 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIR-ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
..++..+...|...|++++|...+++..+.... ++.. ....++..+...+...|++++|.+.+++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA-------------AERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346777888899999999999999988764110 0000 01246778899999999999999999887
Q ss_pred hhC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCC-CcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 247 GNH----KCVL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGLT-PDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 247 ~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
.+. +..+ ....+..+...+...|++++|...++..... .+.. .....+..+...|...|++++|.+.+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 542 1111 2456788888999999999999999876521 1111 12456777888899999999999999987
Q ss_pred HH
Q 048780 318 EE 319 (325)
Q Consensus 318 ~~ 319 (325)
.+
T Consensus 156 ~~ 157 (164)
T 3ro3_A 156 LE 157 (164)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=5.8e-05 Score=51.70 Aligned_cols=94 Identities=10% Similarity=-0.091 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE------------------PEREEAWRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445566777777777777777777642 335566667777777777777777777777665
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 250 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
... +...+..+..++...|++++|...++...
T Consensus 81 ~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 81 DPK-DIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 422 55667777777777777777777777765
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=4.7e-05 Score=52.14 Aligned_cols=96 Identities=13% Similarity=-0.072 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 301 (325)
.+..+...+.+.|++++|...|+...+... -+...|..+-.++...|++++|...|++..+.. +-+...+..+..+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 355667788999999999999999987653 378889999999999999999999999887432 23567888899999
Q ss_pred HccCChHHHHHHHHHHHHc
Q 048780 302 CKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~ 320 (325)
.+.|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.10 E-value=2e-05 Score=68.02 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=93.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 253 (325)
+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+... -
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~ 72 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-K 72 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-T
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-C
Confidence 3445668899999999999998752 34577888899999999999999999999988753 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH--HHccCChHHHHHHHH
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG--FCKEGQHQKANGLLL 315 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 315 (325)
+...|..+..+|...|++++|.+.|++..+...- +...+..+..+ +.+.|++++|.+.++
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6788999999999999999999999998743322 23344445444 888899999999887
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00017 Score=61.16 Aligned_cols=190 Identities=8% Similarity=-0.022 Sum_probs=120.8
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCcccH-----HHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY-----NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-----~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 193 (325)
...+.+.|++++|++.|..+.+.......... ..... .....+..+...|...|++++|.+.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN----------EQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh----------hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35677889999999999999876433211000 00000 0123467788899999999999999987
Q ss_pred HHHcC-CCCChhhH---HHHHH-----------------------HhCCCC-CChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 048780 194 MLSEG-IRADATTY---NTLFM-----------------------AINNVP-PDSHVYTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 194 m~~~g-~~~~~~~~---~~ll~-----------------------~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
....- ..++..+. ...+. ...+.. .-..++..+...|...|++++|..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 76531 11111111 11111 111111 2245677888999999999999999987
Q ss_pred HhhC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCCc--HHhHHHHHHHHHccCChHHHHHHHH
Q 048780 246 IGNH----KCVL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGLTPD--VVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 246 m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
.... +-.+ ...++..+.+.|...|++++|..+++..... .+..|. ...+..+...+...|++++|...+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 7542 1122 2457888899999999999999998876521 111111 2455666667788899999988877
Q ss_pred HHH
Q 048780 316 DME 318 (325)
Q Consensus 316 ~m~ 318 (325)
+..
T Consensus 241 ~a~ 243 (434)
T 4b4t_Q 241 ESF 243 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=4e-05 Score=53.01 Aligned_cols=99 Identities=9% Similarity=-0.072 Sum_probs=78.8
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCc----HHhHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-GLTPD----VVTYN 295 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~ 295 (325)
.++..+-..+.+.|++++|++.|++..+... -+...|..+-.+|.+.|++++|...++...+.. ...++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4566778899999999999999999887653 367889999999999999999999998876311 01111 24677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc
Q 048780 296 IMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.+-.++...|++++|.+.+++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7778889999999999999987764
No 172
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.08 E-value=6.9e-05 Score=59.09 Aligned_cols=130 Identities=9% Similarity=-0.112 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 249 (325)
.+-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.....
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~-------------------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG-------------------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT-------------------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 45556778889999999999999887643 22224455566889999999999999865443
Q ss_pred CCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc--HHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 250 KCVLT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD--VVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 250 ~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
. .|. ...+..+-.++...|++++|+..|++.. .....|. .......-.++.+.|+.++|..+|+++...
T Consensus 165 ~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 165 P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 111 3467888889999999999999999987 4333253 346667777889999999999999999875
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=0.00011 Score=62.97 Aligned_cols=139 Identities=9% Similarity=-0.089 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-----hHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT-----TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (325)
...|..+-..|.+.|++++|...|++..+.. |+.. ....+ .+....+|..+..+|.+.|++++|+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~------~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKAS------ESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHH------HHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4467778889999999999999999988742 1100 00000 000146788889999999999999999
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHH-HHHHH
Q 048780 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG-LLLDM 317 (325)
Q Consensus 243 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~m 317 (325)
+++..+... .+...|..+-.+|...|++++|...|+...+.. +-+...+..+..++.+.++.+++.+ .++.|
T Consensus 340 ~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 340 CDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987653 378899999999999999999999999988332 2245677788888888888887764 44444
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=0.00012 Score=62.83 Aligned_cols=141 Identities=11% Similarity=-0.034 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCccc----HHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT----YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 187 (325)
...|..+-..|.+.|++++|...|++..+.. |+... ...-+.. .....|..+..+|.+.|++++|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~---------~~~~~~~nla~~~~~~g~~~~A 336 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASES---------FLLAAFLNLAMCYLKLREYTKA 336 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHH---------HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHH---------HHHHHHHHHHHHHHHhcCHHHH
Confidence 3467788889999999999999999988752 21100 0000000 0146788899999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 048780 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267 (325)
Q Consensus 188 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 267 (325)
+..|++..+.. +.+..+|..+..+|...|++++|...|++..+... -+...+..+..++.+
T Consensus 337 ~~~~~~al~~~------------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 337 VECCDKALGLD------------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 99999998862 34677888889999999999999999999987642 256688888888988
Q ss_pred cCChHHHH-HHHHHHh
Q 048780 268 IGRLKIAW-DIFHMLM 282 (325)
Q Consensus 268 ~g~~~~a~-~~~~~~~ 282 (325)
.++.+++. .++..|.
T Consensus 398 ~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 398 AKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 89888765 3455554
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=0.00024 Score=50.71 Aligned_cols=142 Identities=12% Similarity=-0.017 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 112 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
..++..+...+...|++++|.+.+++..+....... . ..-..++..+...+...|++++|.+.+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 72 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--K--------------AAERIAYSNLGNAYIFLGEFETASEYY 72 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--H--------------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--c--------------hHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346777888899999999999999987764211000 0 001246777888999999999999999
Q ss_pred HHHHHcCCC-CChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHH
Q 048780 192 REMLSEGIR-ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH----KCV-LTIETCNCLIDGL 265 (325)
Q Consensus 192 ~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~ 265 (325)
++..+.... .+. .....++..+...+...|++++|.+.+++..+. +.. ....++..+...|
T Consensus 73 ~~a~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 73 KKTLLLARQLKDR-------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 988753110 010 011345777888999999999999999877542 211 1245678888899
Q ss_pred HhcCChHHHHHHHHHHh
Q 048780 266 CKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 266 ~~~g~~~~a~~~~~~~~ 282 (325)
...|++++|.+.+++..
T Consensus 140 ~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 99999999999998765
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=3.2e-05 Score=66.73 Aligned_cols=122 Identities=12% Similarity=0.021 Sum_probs=94.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 117 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
.+...+.+.|++++|.+.|++..+. .|+ +...|..+..+|.+.|++++|.+.+++..+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 68 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPS--------------------NAIYYGNRSLAYLRTECYGYALGDATRAIE 68 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCc--------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444567889999999999998876 333 577889999999999999999999999988
Q ss_pred cCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH--HHhcCChHHH
Q 048780 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG--LCKIGRLKIA 274 (325)
Q Consensus 197 ~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a 274 (325)
.. +.+..+|..+..+|...|++++|++.|++..+.... +...+..+..+ +.+.|++++|
T Consensus 69 l~------------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 69 LD------------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERA 129 (477)
T ss_dssp SC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC
T ss_pred hC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 62 345677888899999999999999999998775422 33455555555 8888999999
Q ss_pred HHHHH
Q 048780 275 WDIFH 279 (325)
Q Consensus 275 ~~~~~ 279 (325)
.+.++
T Consensus 130 ~~~~~ 134 (477)
T 1wao_1 130 IAGDE 134 (477)
T ss_dssp -----
T ss_pred hcccc
Confidence 99988
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=0.00034 Score=47.99 Aligned_cols=94 Identities=13% Similarity=-0.028 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCCh---HhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS---HVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
..+...+...|++++|...|+...+.. +.+. ..+..+..++...|++++|...|+...+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY------------------PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC------------------CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345667788999999999999988752 1122 4667778889999999999999999877
Q ss_pred CCCCcC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 249 HKCVLT---IETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 249 ~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
.... + ...+..+..++...|++++|...|+.+...
T Consensus 68 ~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 68 RYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5422 2 567888888999999999999999988743
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.8e-05 Score=53.85 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=75.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 048780 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259 (325)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 259 (325)
..|++++|...|++..+.+.. .+.+..++..+..+|...|++++|...|++..+.... +...+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 65 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ---------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRV 65 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC---------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 457888999999988875311 0224566788899999999999999999998876533 677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHH
Q 048780 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (325)
.+..++...|++++|...++.......-.|+...|...+..|.
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 8999999999999999999987744333444444444444443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.00024 Score=48.85 Aligned_cols=97 Identities=13% Similarity=0.018 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc-HHhHHHHH
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI---ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD-VVTYNIMI 298 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 298 (325)
+..+...+...|++++|...|+...+.... +. ..+..+..++...|++++|...|+.......-.+. ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 344567788999999999999998775422 22 57788888999999999999999998743211111 56678888
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 048780 299 HGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.++...|++++|...+++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999998765
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=0.00014 Score=62.52 Aligned_cols=133 Identities=9% Similarity=0.001 Sum_probs=93.5
Q ss_pred HHHccCcHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048780 121 NLSKDGKMEEANCLLEVMIQRD---VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197 (325)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (325)
.+...|++++|+.++++..+.. +.|+ .+....+++.|..+|...|++++|..++++..+-
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-----------------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADT-----------------NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTT-----------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCC-----------------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3557899999999998877542 1121 1113567899999999999999999999987642
Q ss_pred ---CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCC--CcCHHHHHHHHHHHHh
Q 048780 198 ---GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-----HKC--VLTIETCNCLIDGLCK 267 (325)
Q Consensus 198 ---g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~--~~~~~~~~~ll~~~~~ 267 (325)
-..|+ .+....+++.|...|...|++++|+.++++..+ .|. +....+.+.+-.++..
T Consensus 381 ~~~~lG~~-------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 381 YMKLYHHN-------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp HHHHSCTT-------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 11111 111235688889999999999999999887653 231 2234455667777778
Q ss_pred cCChHHHHHHHHHHhh
Q 048780 268 IGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 268 ~g~~~~a~~~~~~~~~ 283 (325)
.+.+++|+.++..+++
T Consensus 448 ~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 448 LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888763
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=0.00019 Score=59.70 Aligned_cols=137 Identities=10% Similarity=-0.086 Sum_probs=98.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIR-ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
.+..+-..+.+.|++++|.+.|++..+.--. +........ ....+.+..+|..+..+|.+.|++++|++.+++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~---~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG---AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHH---GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHH---HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4777788899999999999999988762000 000000000 000122456788899999999999999999999987
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHH
Q 048780 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 249 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (325)
... -+...|..+-.+|...|++++|...|+...+.. +-+...+..+...+...++.+++.+
T Consensus 302 ~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 367889999999999999999999999887432 2256667777777777777776654
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.91 E-value=0.00034 Score=55.71 Aligned_cols=98 Identities=9% Similarity=-0.099 Sum_probs=82.7
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
+...+..+...+...|++++|...|+....... -+...|..+..+|.+.|++++|...++...+.. +-+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 455677778899999999999999999887642 278889999999999999999999999987322 33567888889
Q ss_pred HHHHccCChHHHHHHHHHHHH
Q 048780 299 HGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.+|...|++++|...+++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=0.00033 Score=58.17 Aligned_cols=138 Identities=13% Similarity=-0.052 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
..+..+-..+.+.|++++|++.|++..+.--. +....... .....+.+...|..+..+|.+.|++++|.+.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~-------~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD-------GAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHH-------HGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHH-------HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34777888899999999999999988762000 00000000 00000114667888999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCh
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 271 (325)
++..+.. +.+..+|..+..+|...|++++|++.|++..+... -+...+..+...+...++.
T Consensus 297 ~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 297 LEALEID------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHTTC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence 9998752 33567788889999999999999999999877642 2667777777777777777
Q ss_pred HHHHH
Q 048780 272 KIAWD 276 (325)
Q Consensus 272 ~~a~~ 276 (325)
+++.+
T Consensus 358 ~~a~k 362 (370)
T 1ihg_A 358 KDKEK 362 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=4.9e-05 Score=51.64 Aligned_cols=87 Identities=11% Similarity=0.010 Sum_probs=68.4
Q ss_pred HcCCHHHHHHHHHHHhhCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHH
Q 048780 232 KNGFVLEAMKVFSAIGNHK--CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309 (325)
Q Consensus 232 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 309 (325)
..|++++|+..|++..+.+ -+-+...+..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 3588999999999998764 22356788899999999999999999999987432 3357788889999999999999
Q ss_pred HHHHHHHHHHc
Q 048780 310 ANGLLLDMEET 320 (325)
Q Consensus 310 a~~~~~~m~~~ 320 (325)
|...+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00061 Score=49.06 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSE------GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (325)
...+...-..+.+.|++++|...|....+. .-.|+...+..+ .+.+..+|..+..+|.+.|++++|+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL------DRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHH------HHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHH------HHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 445677778899999999999999988764 011211111111 12245678889999999999999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 242 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
.++...+.. +.+...|..+..+|...|++++|...|+....
T Consensus 85 ~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 85 TSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 999998765 33688999999999999999999999998773
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.73 E-value=0.00019 Score=58.91 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH------HHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 048780 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN------TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241 (325)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~------~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (325)
...+..+-..+.+.|++++|...|++..+.. |+...+. ..... ....+|..+..+|.+.|++++|+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~-----l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALA-----VKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHH-----HHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHH-----HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456667778889999999999999987642 2221100 00000 011378888999999999999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc-HHhHHHHHHH-HHccCChHHHHHHHHHHHH
Q 048780 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD-VVTYNIMIHG-FCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 242 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~a~~~~~~m~~ 319 (325)
.++...+... -+...|..+-.+|...|++++|...|+...+ . .|+ ...+..+... ....+..+++...++.|..
T Consensus 252 ~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 252 HCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK-Y--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999887652 3788999999999999999999999998762 2 443 3444444444 2344567778888888764
Q ss_pred c
Q 048780 320 T 320 (325)
Q Consensus 320 ~ 320 (325)
.
T Consensus 328 ~ 328 (338)
T 2if4_A 328 G 328 (338)
T ss_dssp -
T ss_pred C
Confidence 3
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.71 E-value=0.0005 Score=49.53 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=79.1
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhC--------C---------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNH--------K---------CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
..+......+.+.|++++|...|+..... . -+.+...|..+..+|.+.|++++|...++....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34566678889999999999999887654 0 012346788899999999999999999998874
Q ss_pred CCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320 (325)
Q Consensus 284 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (325)
.. +.+...|..+..+|...|++++|...+++..+.
T Consensus 92 ~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 32 345788899999999999999999999987754
No 188
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.67 E-value=0.011 Score=48.30 Aligned_cols=212 Identities=9% Similarity=-0.004 Sum_probs=137.7
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchhHHHHH-----------HHHHH
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEG-RILEAARLFKKLNVFCCDPNVITFNTLA-----------LVALN 70 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l~-----------~~a~~ 70 (325)
..++|+++++.+...+ +-+..+|+.--..+...| .++++++.++.+.... +-+...|+.-- +.+++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4578999999999886 456677888888888888 5999999999998753 22333444331 23333
Q ss_pred HHHHHHHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHH--------HHHHHHHHHHHCC
Q 048780 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME--------EANCLLEVMIQRD 142 (325)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g 142 (325)
+++.+.+.. +.+...|+.-...+.+.|.++ ++++.++++.+..
T Consensus 147 ~~~k~L~~d-----------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 147 YIHGSLLPD-----------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHTSSC-----------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-----------------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 333333322 224444444444444444444 8999999998874
Q ss_pred CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCC
Q 048780 143 VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN-------VEDAVSLCREMLSEGIRADATTYNTLFMAINN 215 (325)
Q Consensus 143 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (325)
.. |...|+..-..+.+.+. ++++++.+++.....
T Consensus 198 p~----------------------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~----------------- 238 (349)
T 3q7a_A 198 GR----------------------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI----------------- 238 (349)
T ss_dssp TT----------------------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred CC----------------------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-----------------
Confidence 33 77788887777777775 788888888887752
Q ss_pred CCCChHhHHHHHHHHHHcCCH--------------------HHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHhcCC
Q 048780 216 VPPDSHVYTTYIDGLYKNGFV--------------------LEAMKVFSAIGNHK-----CVLTIETCNCLIDGLCKIGR 270 (325)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~g~ 270 (325)
+.|...|+-+-..+.+.|+. ....+....+...+ -.++......+...|...|+
T Consensus 239 -P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~ 317 (349)
T 3q7a_A 239 -PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR 317 (349)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC
T ss_pred -CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC
Confidence 44566666656556555543 23333333333322 13578889999999999999
Q ss_pred hHHHHHHHHHHhhCC
Q 048780 271 LKIAWDIFHMLMQNP 285 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~ 285 (325)
.++|.++++.+.++.
T Consensus 318 ~~~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 318 VDDAAKVFEKLSSEY 332 (349)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.67 E-value=0.00032 Score=57.49 Aligned_cols=140 Identities=12% Similarity=0.023 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccH------HHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY------NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~------~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 186 (325)
..+..+-..+.+.|++++|...|+...... |+...+ ......+ ....|..+..+|.+.|++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l---------~~~~~~nla~~~~~~g~~~~ 248 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAV---------KNPCHLNIAACLIKLKRYDE 248 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHH---------HTHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHH---------HHHHHHHHHHHHHHcCCHHH
Confidence 456677788889999999999999987652 321110 0000000 11378888999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH-H
Q 048780 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG-L 265 (325)
Q Consensus 187 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~ 265 (325)
|...+++..+.. +.+..+|..+..+|...|++++|...|+...+.... +...+..+... .
T Consensus 249 A~~~~~~al~~~------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 249 AIGHCNIVLTEE------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHHC------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 999999998752 346678888899999999999999999998765422 34455554444 2
Q ss_pred HhcCChHHHHHHHHHHh
Q 048780 266 CKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 266 ~~~g~~~~a~~~~~~~~ 282 (325)
...+..+++..+|..|.
T Consensus 310 ~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIF 326 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34456777888888776
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00013 Score=48.65 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=55.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...+..+...+...|++++|.+.|++..+.. +.+..+|..+..++...|++++|++.+++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ------------------PQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34556666677777777777777777776641 334556666677777777777777777776
Q ss_pred hhCCCCc-C----HHHHHHHHHHHHhcCChHHHHHHH
Q 048780 247 GNHKCVL-T----IETCNCLIDGLCKIGRLKIAWDIF 278 (325)
Q Consensus 247 ~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~ 278 (325)
.+..... + ...+..+..++...|+.+.|...+
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 6543110 0 334444444555555444444333
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.59 E-value=0.02 Score=46.36 Aligned_cols=165 Identities=7% Similarity=-0.065 Sum_probs=110.7
Q ss_pred CChhhHHHHHHHHHccC--cHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCC-HHH
Q 048780 110 PDVVTLNVMTDNLSKDG--KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN-VED 186 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~ 186 (325)
.+..+|+.--..+.+.+ .+++++++++.+.+.... |..+|+.---.....|. +++
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr----------------------Ny~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER----------------------NFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT----------------------CHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHhCcCHHH
Confidence 35556666555666666 489999999999987432 77888888777778888 699
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc--------------CCHHHHHHHHHHHhhCCCC
Q 048780 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN--------------GFVLEAMKVFSAIGNHKCV 252 (325)
Q Consensus 187 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~m~~~~~~ 252 (325)
+++.+..+.+.. +-|..+|+-....+.+. +.++++++.+.........
T Consensus 164 el~~~~~~I~~~------------------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~ 225 (331)
T 3dss_A 164 ELAFTDSLITRN------------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 225 (331)
T ss_dssp HHHHHHHHHHHC------------------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence 999999998863 33455555444444443 4578888888888766533
Q ss_pred cCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhCCCCCCcHHhHHHHHH-----HHHccCChHHHHHHHHH
Q 048780 253 LTIETCNCLIDGLCKI-----------GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH-----GFCKEGQHQKANGLLLD 316 (325)
Q Consensus 253 ~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~ 316 (325)
|...|+-+-..+.+. +.++++.+.++++.+. .|+. .|..+-. +.-..|..+++...+.+
T Consensus 226 -d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~---~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (331)
T 3dss_A 226 -DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL---EPEN-KWCLLTIILLMRALDPLLYEKETLQYFST 300 (331)
T ss_dssp -CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh---Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 777776554444444 3467888888887732 5553 3443222 22245777788888888
Q ss_pred HHH
Q 048780 317 MEE 319 (325)
Q Consensus 317 m~~ 319 (325)
+.+
T Consensus 301 l~~ 303 (331)
T 3dss_A 301 LKA 303 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.57 E-value=0.0047 Score=43.10 Aligned_cols=108 Identities=10% Similarity=-0.049 Sum_probs=68.0
Q ss_pred CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 048780 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205 (325)
Q Consensus 126 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 205 (325)
+++++|+++|++..+.|.. ... +-..|...+.+++|.+.|++..+.|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~------------------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g------- 55 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM------------------------FGC--LSLVSNSQINKQKLFQYLSKACELN------- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT------------------------THH--HHHHTCTTSCHHHHHHHHHHHHHTT-------
T ss_pred cCHHHHHHHHHHHHcCCCH------------------------hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-------
Confidence 4567777777777766521 112 4445555566777777777776654
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCChHHHHHH
Q 048780 206 YNTLFMAINNVPPDSHVYTTYIDGLYK----NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK----IGRLKIAWDI 277 (325)
Q Consensus 206 ~~~ll~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~ 277 (325)
+...+..|-..|.. .++.++|.+.|+...+.| +...+..|-..|.. .+++++|...
T Consensus 56 -------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 119 (138)
T 1klx_A 56 -------------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKT 119 (138)
T ss_dssp -------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 34455555666666 667777777777766654 45556666666666 6677777777
Q ss_pred HHHHh
Q 048780 278 FHMLM 282 (325)
Q Consensus 278 ~~~~~ 282 (325)
|+...
T Consensus 120 ~~~Aa 124 (138)
T 1klx_A 120 FEKAC 124 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.56 E-value=0.0016 Score=46.40 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 191 (325)
..+...-..+.+.|++++|++.|+...+.... |+...+.. .+.+...|..+-.++.+.|++++|+..+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~-----------~~~~a~a~~n~g~al~~Lgr~~eAl~~~ 80 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH-----------AGFDAFCHAGLAEALAGLRSFDEALHSA 80 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCH-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhh-----------ccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566677788899999999999998876322 11100000 0002338899999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCC-ChHhH----HHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPP-DSHVY----TTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
+...+. +.....+.| +...| ...-.++...|++++|+..|+...+
T Consensus 81 ~kAL~l------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 81 DKALHY------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHH------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHh------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 998874 111111222 44567 7888899999999999999988754
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00033 Score=47.15 Aligned_cols=65 Identities=11% Similarity=-0.107 Sum_probs=55.7
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
+.+...+..+...|...|++++|...|++..+... .+...|..+..+|...|++++|...|+...
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44667888889999999999999999999887653 357788899999999999999999999876
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.52 E-value=0.0046 Score=43.16 Aligned_cols=113 Identities=10% Similarity=-0.075 Sum_probs=90.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 048780 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260 (325)
Q Consensus 181 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 260 (325)
.+++++|.+.|++..+.|.. ... |-..|...+..++|.+.|++..+.| +...+..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--------------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~ 62 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--------------------FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRF 62 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--------------------THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--------------------hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHH
Confidence 35789999999999887621 122 4566667778889999999988876 6777888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcCC
Q 048780 261 LIDGLCK----IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK----EGQHQKANGLLLDMEETGL 322 (325)
Q Consensus 261 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 322 (325)
|-..|.. .+++++|.+.|+...+ .| +...+..|-..|.. .++.++|.+++++..+.|.
T Consensus 63 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 63 LGDFYENGKYVKKDLRKAAQYYSKACG-LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888888 8899999999999884 33 56777788888888 8999999999999888775
No 196
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.51 E-value=0.026 Score=45.77 Aligned_cols=150 Identities=9% Similarity=0.019 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhh
Q 048780 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR--NVEDAVSLCREMLSEGIRADATT 205 (325)
Q Consensus 128 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~ 205 (325)
+++++.+++.+.... | .+..+|+.---.+.+.+ .+++++.+++.+.+..
T Consensus 90 l~~EL~~~~~~L~~~--P--------------------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d------- 140 (331)
T 3dss_A 90 VKAELGFLESCLRVN--P--------------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD------- 140 (331)
T ss_dssp HHHHHHHHHHHHHHC--T--------------------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhC--C--------------------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-------
Confidence 678889998888763 2 26778888777777777 4899999999999863
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHHcCC-HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc--------------CC
Q 048780 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGF-VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI--------------GR 270 (325)
Q Consensus 206 ~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------------g~ 270 (325)
+.|..+|+--...+...|. ++++++.++.+.+..+. |...|+.....+.+. +.
T Consensus 141 -----------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~ 208 (331)
T 3dss_A 141 -----------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV 208 (331)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHH
T ss_pred -----------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHH
Confidence 4567777777777778888 68999999999887754 888887766666554 44
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHcc-----------CChHHHHHHHHHHHHc
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE-----------GQHQKANGLLLDMEET 320 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~ 320 (325)
++++.+.+....... +-|...|+.+--.+.+. +.++++.+.++++.+.
T Consensus 209 ~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 209 LLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 778888888776332 44677777665555554 4567888888888754
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.0024 Score=40.43 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
..+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444455555555555555555554431 12333444445555555555555555555444
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0007 Score=44.91 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=70.1
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc-------H
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD-------V 291 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~ 291 (325)
+...|..+...+...|++++|.+.|++..+... .+...+..+..++.+.|++++|...++.... . .|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-Y--TSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S--CSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h--CCCccHHHHHH
Confidence 455677788899999999999999999887653 3678899999999999999999999999873 2 444 4
Q ss_pred HhHHHHHHHHHccCChHHHHHHH
Q 048780 292 VTYNIMIHGFCKEGQHQKANGLL 314 (325)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~ 314 (325)
..+..+..++...|+.+.|.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHH
Confidence 45555556666666655554433
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.46 E-value=0.00043 Score=45.38 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=55.6
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
+.+..++..+...|...|++++|+..|++..+.... +...|..+-.+|...|++++|...|++..
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346678888999999999999999999998876533 56789999999999999999999998876
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.45 E-value=0.003 Score=44.98 Aligned_cols=97 Identities=11% Similarity=-0.047 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL------T-----IETCNCLIDGLCKIGRLKIAWDIFHMLMQN----PGL 287 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~------~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~ 287 (325)
+...-..+.+.|++++|+..|+...+..... + ...|..+-.++.+.|++++|+..++...+- ..+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445667788999999999999887643220 2 238999999999999999999999887732 112
Q ss_pred CCc-HHhH----HHHHHHHHccCChHHHHHHHHHHHH
Q 048780 288 TPD-VVTY----NIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 288 ~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
.|+ ...| ...-.++...|++++|+..|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 554 4677 7888899999999999999998764
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.41 E-value=0.0063 Score=52.37 Aligned_cols=108 Identities=9% Similarity=-0.021 Sum_probs=79.7
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD---VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 187 (325)
...+++.|...|...|++++|+.++++..+.- +.|+ .+-...+++.|...|...|++++|
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-----------------Hp~~a~~l~nLa~~~~~~G~~~eA 412 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-----------------NAQLGMAVMRAGLTNWHAGHIEVG 412 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-----------------CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHHHHHCCCHHHH
Confidence 45689999999999999999999999876531 1121 111456789999999999999999
Q ss_pred HHHHHHHHHc---CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 188 VSLCREMLSE---GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 188 ~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
..++++..+- -+.|+. +....+.+.+-.++...+.+.+|+.++..+++
T Consensus 413 ~~~~~~Al~i~~~~lG~~H-------------p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 413 HGMICKAYAILLVTHGPSH-------------PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHTCTTS-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987642 112221 11223456677888889999999999998865
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.0016 Score=43.66 Aligned_cols=79 Identities=8% Similarity=-0.045 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 238 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
+|.+.|++..+... .+...+..+...|...|++++|...|+...... +.+...|..+..+|...|++++|...+++.
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56777877776542 367889999999999999999999999987432 335678889999999999999999999987
Q ss_pred HH
Q 048780 318 EE 319 (325)
Q Consensus 318 ~~ 319 (325)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.36 E-value=0.003 Score=39.97 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=62.6
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
+...+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...++...... +.+...+..+-
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 345677788899999999999999998877642 367788899999999999999999999887432 22455555555
Q ss_pred HHHHc
Q 048780 299 HGFCK 303 (325)
Q Consensus 299 ~~~~~ 303 (325)
.++.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.32 E-value=0.015 Score=51.09 Aligned_cols=138 Identities=9% Similarity=0.043 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhh
Q 048780 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR--NVEDAVSLCREMLSEGIRADATT 205 (325)
Q Consensus 128 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~ 205 (325)
++++++.++.+.+.. |. +..+|+.---++.+.+ +++++++.++.+.+..
T Consensus 89 ~~~eL~~~~~~l~~~--pK--------------------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d------- 139 (567)
T 1dce_A 89 VKAELGFLESCLRVN--PK--------------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD------- 139 (567)
T ss_dssp HHHHHHHHHHHHHHC--TT--------------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhC--CC--------------------CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-------
Confidence 899999999998763 32 7788888888888889 7799999999999873
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHHcC-CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc--------------CC
Q 048780 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNG-FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI--------------GR 270 (325)
Q Consensus 206 ~~~ll~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------------g~ 270 (325)
+.+..+|+--...+.+.| .++++++.++.+.+.... |...|+.....+.+. +.
T Consensus 140 -----------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~ 207 (567)
T 1dce_A 140 -----------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV 207 (567)
T ss_dssp -----------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH
T ss_pred -----------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHH
Confidence 446778887788888888 899999999999887754 788888877776663 45
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChH
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (325)
++++.+.++...... +-+...|..+-..+.+.++.+
T Consensus 208 ~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 208 LLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCcc
Confidence 688888887776322 336677877776776666533
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.17 E-value=0.0039 Score=40.64 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=56.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...+..+..+|.+.|++++|...|++..+.. +.+..+|..+..+|...|++++|.+.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD------------------PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56778889999999999999999999998863 345678888999999999999999999887
Q ss_pred hhC
Q 048780 247 GNH 249 (325)
Q Consensus 247 ~~~ 249 (325)
.+.
T Consensus 68 l~l 70 (100)
T 3ma5_A 68 IEV 70 (100)
T ss_dssp HHH
T ss_pred Hhh
Confidence 653
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.17 E-value=0.054 Score=47.64 Aligned_cols=152 Identities=9% Similarity=-0.067 Sum_probs=116.3
Q ss_pred CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHHHHH
Q 048780 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN----------VEDAVSLCREML 195 (325)
Q Consensus 126 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~ 195 (325)
..-++|++.++.+... .|+ +..+|+.--.++...|+ ++++++.++.+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~--------------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPD--------------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--Cch--------------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence 3456789999998876 333 55667766666666666 899999999998
Q ss_pred HcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcC--CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-ChH
Q 048780 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG--FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG-RLK 272 (325)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~ 272 (325)
+.. +.+..+|+.-...+.+.+ +++++++.++.+.+.+.+ |...|+.--..+.+.| .++
T Consensus 101 ~~~------------------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 101 RVN------------------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp HHC------------------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHH
T ss_pred HhC------------------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChH
Confidence 863 556778888788888888 779999999999988755 8889988888888888 899
Q ss_pred HHHHHHHHHhhCCCCCCcHHhHHHHHHHHHcc--------------CChHHHHHHHHHHHHc
Q 048780 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE--------------GQHQKANGLLLDMEET 320 (325)
Q Consensus 273 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~ 320 (325)
++.+.++.+. +.. .-|...|+.....+.+. +.++++.+++++....
T Consensus 162 ~el~~~~~~I-~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 162 EELAFTDSLI-TRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp HHHHHHHTTT-TTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 9999999887 332 34677887777766653 4568888888776653
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.89 E-value=0.011 Score=50.06 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=62.9
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
+..+.+.|++++|++++++..+.. +-... ......+++.+..+|...|++++|+.++++..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~----------------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDI----------------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT----------------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCcc----------------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 455667788889988888887542 11111 111345788888999999999999999887764
Q ss_pred c---CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 197 E---GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 197 ~---g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
- -..|+ .+....+++.|...|...|++++|+.++++..
T Consensus 358 i~~~~lg~~-------------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 358 PYRIFFPGS-------------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHSCSS-------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHcCCC-------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2 01111 11122346666666667777777766666543
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.84 E-value=0.0091 Score=50.51 Aligned_cols=93 Identities=17% Similarity=0.074 Sum_probs=71.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCC---C----CcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCc-HHh
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHK---C----VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN----P-GLTPD-VVT 293 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~---~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~p~-~~~ 293 (325)
+..+.+.|++++|+.++++..+.. + .....+++.+..+|...|++++|+.++++...- . ...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 556677899999999998886531 1 123568899999999999999999998876521 1 12333 467
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 294 YNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88889999999999999999988653
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0081 Score=50.82 Aligned_cols=92 Identities=5% Similarity=-0.133 Sum_probs=55.4
Q ss_pred cCcHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 048780 125 DGKMEEANCLLEVMIQRD---VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE---G 198 (325)
Q Consensus 125 ~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g 198 (325)
.|++++|+.++++..+.. +.|+ .+....+++.+..+|...|++++|..++++..+- -
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~-----------------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~ 373 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDS-----------------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH 373 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTT-----------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChh-----------------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 467788888877765431 1121 1113457888888888888888888888877642 0
Q ss_pred CCCChhhHHHHHHHhCCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048780 199 IRADATTYNTLFMAINNVPP-DSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247 (325)
Q Consensus 199 ~~~~~~~~~~ll~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 247 (325)
..| ..| ...+++.|...|...|++++|+.++++..
T Consensus 374 lG~--------------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 374 YPV--------------YSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp SCS--------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCC--------------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 111 111 12346666666666666666666665543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0067 Score=51.31 Aligned_cols=88 Identities=5% Similarity=-0.076 Sum_probs=66.6
Q ss_pred HcCCHHHHHHHHHHHhhC-----C--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCC-CCCc-HHhHHHHH
Q 048780 232 KNGFVLEAMKVFSAIGNH-----K--CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ----NPG-LTPD-VVTYNIMI 298 (325)
Q Consensus 232 ~~~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~p~-~~~~~~li 298 (325)
..|++++|+.++++..+. | ......+++.|..+|...|++++|..++++... ..| -.|+ ..+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999998876541 2 112356889999999999999999999887652 112 2343 46788899
Q ss_pred HHHHccCChHHHHHHHHHHHH
Q 048780 299 HGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~ 319 (325)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988654
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.72 E-value=0.0046 Score=43.96 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=83.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCH----------HHHHHHHHHHhh
Q 048780 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV----------LEAMKVFSAIGN 248 (325)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~ 248 (325)
.+.+.+++|.+.++...+.. +.+...|+.+-.++...+++ ++|+..|++..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~------------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ 74 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH
Confidence 46678899999999888763 44677777777788777664 599999999888
Q ss_pred CCCCcCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 249 HKCVLTIETCNCLIDGLCKIG-----------RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 249 ~~~~~~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
.... +..+|..+-.+|.+.| ++++|.+.|++..+ +.|+-..|...+... ++|.++.-++
T Consensus 75 ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~~~------~ka~el~~~~ 144 (158)
T 1zu2_A 75 IDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMT------AKAPQLHAEA 144 (158)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH------HTHHHHHHHH
T ss_pred hCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHH------HhCHhccCcc
Confidence 7633 6778999999998875 89999999998873 377776666555543 3344444444
Q ss_pred HHc
Q 048780 318 EET 320 (325)
Q Consensus 318 ~~~ 320 (325)
...
T Consensus 145 ~~~ 147 (158)
T 1zu2_A 145 YKQ 147 (158)
T ss_dssp HHS
T ss_pred ccc
Confidence 433
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.02 Score=52.65 Aligned_cols=84 Identities=8% Similarity=-0.053 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++.+..
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------------------------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD--------------------------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------------------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------------------------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 445566666666666666666666665543 222334444455555555444444
Q ss_pred hhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
...| -++....+|.+.|++++|.+++..+.
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 4333 12334444555666666666665543
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.55 E-value=0.019 Score=36.88 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=55.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh-H-HHHHHHHHHHHHHHHH
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMV-TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT-F-NTLALVALNLFEEMVN 77 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~-~~l~~~a~~~~~~~~~ 77 (325)
+|++++|+..|+...+.. +.+.. .|..+...|.+.|++++|...|++..+. .|+... + +..+..+...|++...
T Consensus 13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQARKMVMDILNFYNKDMY 89 (99)
T ss_dssp HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHHHHCCTTH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 378999999999998875 44667 8899999999999999999999999876 343332 2 2444566666555433
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.53 E-value=0.0096 Score=42.32 Aligned_cols=102 Identities=11% Similarity=-0.038 Sum_probs=75.4
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCC----------HHHHHHHH
Q 048780 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN----------VEDAVSLC 191 (325)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~ 191 (325)
..+.+.+++|.+.++...+. .|+ +...|..+-.++...++ +++|+..|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~--------------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~l 69 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPL--------------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTT--------------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCC--------------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHH
Confidence 34567889999999988876 343 66677777777777765 46999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcC-----------CHHHHHHHHHHHhhCCCCcCHHHHHH
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG-----------FVLEAMKVFSAIGNHKCVLTIETCNC 260 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~ 260 (325)
++..+.. +.+..+|..+-.+|...| ++++|++.|++..+. .|+...|..
T Consensus 70 e~AL~ld------------------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 70 EEALLID------------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHC------------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHhC------------------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 9888752 345678888899998764 899999999998875 466555554
Q ss_pred HHHHH
Q 048780 261 LIDGL 265 (325)
Q Consensus 261 ll~~~ 265 (325)
.+...
T Consensus 130 al~~~ 134 (158)
T 1zu2_A 130 SLEMT 134 (158)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.43 E-value=0.11 Score=42.46 Aligned_cols=74 Identities=15% Similarity=0.013 Sum_probs=61.1
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.++.... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 4567778777777888899999999999998876 7888888888889999999999999988763 267776654
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.42 E-value=0.086 Score=33.68 Aligned_cols=67 Identities=10% Similarity=0.000 Sum_probs=55.0
Q ss_pred CCChHhHHHHHHHHHHcCC---HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 217 PPDSHVYTTYIDGLYKNGF---VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
+++...+..+..++...++ .++|..++++....+.. +......+-..+.+.|++++|...|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567777777888865555 79999999999887633 7788888889999999999999999999843
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.24 E-value=0.059 Score=34.45 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=48.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIE-TCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
...+...|++++|.+.++...+... .+.. .+..+-.+|...|++++|...|+...+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5667889999999999999887653 2566 8888999999999999999999998743
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.21 Score=36.03 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=40.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
.......|+++.|.++.+++. +...|..|-+.....|+++-|++.|....+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~-----------------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN-----------------------DSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHhcCCHHHHHHHHHHhC-----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 344567899999999987762 456788889999999999999998887764
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.16 E-value=0.17 Score=34.59 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 323 (325)
+...++..++....+|.-++..++...+.. +.+|++...-.+..||.+.|+..++.+++.+..+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444566677777788888888888877542 33667777778888888888888888888888887763
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.17 Score=46.56 Aligned_cols=77 Identities=13% Similarity=-0.034 Sum_probs=50.1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (325)
..++..+.+.|.++.|+++.+.-. .-.......|+++.|.++.+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~---------------------------------~~f~~~l~~~~~~~A~~~~~~~- 678 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD---------------------------------QKFELALKVGQLTLARDLLTDE- 678 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH---------------------------------HHHHHHHHHTCHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCChHHheecCCCcc---------------------------------hheehhhhcCCHHHHHHHHHhh-
Confidence 556666777777777776653211 1123345678888888775433
Q ss_pred HcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
.+...|..+...+.+.++++.|++.|..+.+
T Consensus 679 ----------------------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 679 ----------------------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ----------------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 2456677778888888888888888887653
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.89 E-value=0.1 Score=36.66 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=29.7
Q ss_pred CChHhHHHHHHHHHHcC---CHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 218 PDSHVYTTYIDGLYKNG---FVLEAMKVFSAIGNHKCVL--TIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 218 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
++..+...+..++++.+ +.+++..+|+...+.+ .| +...+-.+--+|.+.|++++|.+.++.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444445555555544 3345555555544433 12 22333333444455555555555555544
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.33 Score=35.04 Aligned_cols=130 Identities=15% Similarity=0.025 Sum_probs=95.2
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 198 (325)
.......|+++.|.++.+.+. +...|..|-......|+++-|.+.|.....
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~---------------------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-- 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN---------------------------DSITWERLIQEALAQGNASLAEMIYQTQHS-- 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--
T ss_pred HHHHHhcCCHHHHHHHHHHhC---------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--
Confidence 455678899999999987651 678899999999999999999999998765
Q ss_pred CCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 048780 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278 (325)
Q Consensus 199 ~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (325)
+..+.-.|...|+.+...++-+.....| -++.....+...|+++++.++|
T Consensus 63 ------------------------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 63 ------------------------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp ------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 3444556777888887777766655554 2566667777889999999998
Q ss_pred HHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
.+.. . .|.. +-.....|..+.|.++.+++
T Consensus 113 ~~~~-r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 113 AEGG-S---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHTT-C---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHCC-C---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 7643 1 2221 11223357778888887765
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.81 E-value=0.63 Score=38.14 Aligned_cols=73 Identities=11% Similarity=-0.049 Sum_probs=57.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 246 (325)
+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------------------~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE-------------------MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 67778888777777899999999999999863 34455556688889999999999999888
Q ss_pred hhCCCCcCHHHHHH
Q 048780 247 GNHKCVLTIETCNC 260 (325)
Q Consensus 247 ~~~~~~~~~~~~~~ 260 (325)
.... |...+|..
T Consensus 337 lrL~--P~~~t~~~ 348 (372)
T 3ly7_A 337 FNLR--PGANTLYW 348 (372)
T ss_dssp HHHS--CSHHHHHH
T ss_pred HhcC--CCcChHHH
Confidence 7754 56656543
No 224
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.08 E-value=0.36 Score=30.93 Aligned_cols=68 Identities=7% Similarity=0.048 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 048780 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75 (325)
Q Consensus 7 A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~ 75 (325)
..+-+..+...++-|++.+..+.+++|.|..++..|.++|+-++... .....+|..++++..-.++++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqElkPtl~EL 96 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNEL 96 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHHhhHHHHh
Confidence 44555566667888999999999999999999999999999988653 334567888876666555554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.03 E-value=0.33 Score=30.86 Aligned_cols=67 Identities=7% Similarity=0.024 Sum_probs=53.9
Q ss_pred CchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 048780 166 HDVYSYNILINGYCKDRN---VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242 (325)
Q Consensus 166 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (325)
.+...+..+..++...++ .++|..++++..+.. +.+..++..+...+...|++++|...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d------------------p~~~rA~~~lg~~~~~~g~y~~Ai~~ 65 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE------------------PYNEAALSLIANDHFISFRFQEAIDT 65 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC------------------cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356667777777765444 799999999999862 45677888889999999999999999
Q ss_pred HHHHhhCC
Q 048780 243 FSAIGNHK 250 (325)
Q Consensus 243 ~~~m~~~~ 250 (325)
|+.+.+..
T Consensus 66 w~~~l~~~ 73 (93)
T 3bee_A 66 WVLLLDSN 73 (93)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhhC
Confidence 99998764
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.97 E-value=0.28 Score=31.91 Aligned_cols=73 Identities=8% Similarity=0.050 Sum_probs=56.7
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 048780 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189 (325)
Q Consensus 110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (325)
.+...+..+-..+.+.|+++.|..+|+...+.--.++ ........++..+..+|.+.|+++.|..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~---------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~ 67 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE---------------ISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------------CCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC---------------CCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence 4556677888999999999999999999876521110 0112356778899999999999999999
Q ss_pred HHHHHHHc
Q 048780 190 LCREMLSE 197 (325)
Q Consensus 190 ~~~~m~~~ 197 (325)
.+++..+.
T Consensus 68 ~~~~al~l 75 (104)
T 2v5f_A 68 LTKKLLEL 75 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999874
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.60 E-value=0.46 Score=33.38 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCCC--cHHhHHHHHHHHHccCChHH
Q 048780 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG---RLKIAWDIFHMLMQNPGLTP--DVVTYNIMIHGFCKEGQHQK 309 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 309 (325)
....+.+.|.+....|. ++..+--.+-.++++++ +++++..+++...+.. .| ....+-.|--+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHH
Confidence 45667777776666664 68888888888999988 6779999999988432 35 35566666778899999999
Q ss_pred HHHHHHHHHHc
Q 048780 310 ANGLLLDMEET 320 (325)
Q Consensus 310 a~~~~~~m~~~ 320 (325)
|.++++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.41 E-value=0.29 Score=31.83 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=55.6
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH------KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 291 (325)
+..-+..|...+.+.|+++.|...|+...+. .-.+...++..+..+|.+.|+++.|...++... . +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al-~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL-E--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH-h--cCCCC
Confidence 4556778888999999999999999877542 113467788999999999999999999999887 3 46654
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.33 E-value=0.54 Score=31.77 Aligned_cols=85 Identities=13% Similarity=-0.022 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHH---HHHHHHHHhhCCCCCC--cHHhHHHHHHHHHccCCh
Q 048780 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI---AWDIFHMLMQNPGLTP--DVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 233 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 307 (325)
...+..+.+.+......|. |+..+--.+..++.++..... +..+++.+.. .+ .| .....-.|.-++.+.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3344455555554444443 566665566666666665554 6677776652 21 23 223333444467777777
Q ss_pred HHHHHHHHHHHHc
Q 048780 308 QKANGLLLDMEET 320 (325)
Q Consensus 308 ~~a~~~~~~m~~~ 320 (325)
++|.++++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776653
No 230
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.22 E-value=0.44 Score=30.54 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
+.-+..+-++.+-..++.|++.+..+.+++|.+.+++..|.++|+.++.+.|-. ..+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Confidence 455677778888888999999999999999999999999999999988665443 4567777654
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.11 E-value=0.91 Score=37.73 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCCcHHhHHHH
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ----NPGLTPDVVTYNIM 297 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 297 (325)
...++..+...|+.+++...+..+.... +.+...|..+|.++...|+..+|.+.|+...+ +.|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445778888999999999998887665 45888999999999999999999999988653 46999988764333
No 232
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.56 E-value=0.97 Score=30.76 Aligned_cols=68 Identities=7% Similarity=0.048 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 048780 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75 (325)
Q Consensus 7 A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~ 75 (325)
..+-+..+...++-|++.+..+.+++|.|..++..|.++|+-.+..- .+...+|..++++-.-.++++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqElkPtl~EL 139 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNEL 139 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHHhhHHHHh
Confidence 33444555666788999999999999999999999999999988653 444667888886666665554
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.51 E-value=1.3 Score=30.95 Aligned_cols=121 Identities=9% Similarity=0.046 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHH
Q 048780 167 DVYSYNILINGYCKDRNV------EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (325)
|..+|-..+...-+.|++ ++..++|++.... ++|+... ...--...|--.. .+...++.++|.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~---------~wrrYI~LWIrYA-~~~ei~D~d~aR 80 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYG---------QNESFARIQVRFA-ELKAIQEPDDAR 80 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGT---------TCHHHHHHHHHHH-HHHHHHCGGGCH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccc---------cHHHHHHHHHHHH-HHHHhcCHHHHH
Confidence 666777777777777888 7888888877664 3332100 0000011111111 112348999999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHH
Q 048780 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301 (325)
Q Consensus 241 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 301 (325)
++|+.+.+.+-+. ...|.....-=.++|++.+|.+++.... ..+-+| .......++-+
T Consensus 81 ~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai-G~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 81 DYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV-ERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp HHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBC-HHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh-ccCCCc-HHHHHHHHHhh
Confidence 9999997664444 7778877777889999999999999987 444443 34455555443
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.10 E-value=0.53 Score=39.13 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCC
Q 048780 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE-----TGLEPN 325 (325)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~pd 325 (325)
...++.++...|+++++...+..+.... +-+...|..++.++.+.|+..+|.+.|++..+ .|+.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4556778889999999998888876443 44788999999999999999999999998754 488884
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.68 E-value=0.55 Score=36.99 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC--CCchhHHHHH-HHHHHHHHHHHH
Q 048780 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTE-GRILEAARLFKKLNVFCCD--PNVITFNTLA-LVALNLFEEMVN 77 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~--~~~~~~~~l~-~~a~~~~~~~~~ 77 (325)
|+.++|...|++.++.+..-+..++......+++. |+.+++.+.+++....... |+....|... .++..++.+...
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQD 297 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhHH
Confidence 78889999999988875333578888888888884 8899999999999887665 7776677666 666666665544
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.06 E-value=1.9 Score=29.11 Aligned_cols=91 Identities=10% Similarity=0.049 Sum_probs=61.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHH---HHHHHHHHhhCCC
Q 048780 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE---AMKVFSAIGNHKC 251 (325)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~m~~~~~ 251 (325)
+..-.....+..+.+-|.+....|. ++..+-..+..++++..+... ++.+++.+.+.+
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~------------------~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~- 68 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS------------------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG- 68 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC------------------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC------------------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-
Confidence 3333444555566666666655442 344555556778888777665 899999988765
Q ss_pred Cc--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 252 VL--TIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 252 ~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
.| .....-.|--++.+.|++++|.+.++.+.+.
T Consensus 69 ~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 69 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 23 3344555667889999999999999998843
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.92 E-value=5.2 Score=33.88 Aligned_cols=271 Identities=9% Similarity=0.048 Sum_probs=155.6
Q ss_pred CCcchHHHHHHHHHhc-----CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHH
Q 048780 2 GRASGGFVLLGRILMS-----CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF-CCDPNVITFNTLALVALNLFEEM 75 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~a~~~~~~~ 75 (325)
|+++.|++.+-.+.+. +..-+......++..|...|+++...+.+..+... |..+ .....++..+...+...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 4667788877666543 23445667888999999999999998888777643 3222 22233334444444332
Q ss_pred HHhcCCccCccHHHHHHHHHHHHhcCchhhcCCCC---ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHH
Q 048780 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP---DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152 (325)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 152 (325)
..++..+...++..... .....+-. .......|...+...|++.+|.+++..+...-...+... -
T Consensus 108 -------~~~d~~~~~~~i~~l~~---vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~--~ 175 (445)
T 4b4t_P 108 -------KSLDLNTRISVIETIRV---VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS--E 175 (445)
T ss_dssp -------CTTHHHHHHHHHHCCSS---SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH--H
T ss_pred -------CchhHHHHHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH--H
Confidence 23444454444433211 11111111 123446788889999999999999999864311111110 0
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCC--hHhHHHHHHHH
Q 048780 153 LMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD--SHVYTTYIDGL 230 (325)
Q Consensus 153 ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~--~~~~~~l~~~~ 230 (325)
-...+..-++.|...+++..|..++......-.. ...+|+ ...+...+..+
T Consensus 176 --------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~-------------~~~~~~lk~~~~~~~~~~~ 228 (445)
T 4b4t_P 176 --------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFK-------------NPKYESLKLEYYNLLVKIS 228 (445)
T ss_dssp --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------------SSCCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc-------------cCCcHHHHHHHHHHHHHHH
Confidence 2346677888999999999999999887532100 001122 23466777778
Q ss_pred HHcCCHHHHHHHHHHHhhC-CCCcCHHHHH----HHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccC
Q 048780 231 YKNGFVLEAMKVFSAIGNH-KCVLTIETCN----CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305 (325)
Q Consensus 231 ~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (325)
...+++.+|-..|.+.-.. ...-+...+. .++.+..-.+....-..+....... ..-++...+..++.+|....
T Consensus 229 ~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~ 307 (445)
T 4b4t_P 229 LHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNE 307 (445)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhch
Confidence 8889999888877666432 1112332222 2333333344444444555544422 22356778888888887753
Q ss_pred --ChHHHHHHH
Q 048780 306 --QHQKANGLL 314 (325)
Q Consensus 306 --~~~~a~~~~ 314 (325)
+++.+.+.+
T Consensus 308 L~~~~~~~~~~ 318 (445)
T 4b4t_P 308 LMRWPIVQKTY 318 (445)
T ss_dssp SSSHHHHHHHT
T ss_pred HhhhHHHHHHH
Confidence 345544443
No 238
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.89 E-value=1.3 Score=30.12 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
+.-+..+-++.+-..++.|++.+....+++|.+.+|+..|.++|+.++.+.|- ...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHHH
Confidence 34456667777778889999999999999999999999999999998865543 35567777654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.40 E-value=6.3 Score=35.81 Aligned_cols=55 Identities=20% Similarity=0.099 Sum_probs=47.4
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048780 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194 (325)
Q Consensus 118 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 194 (325)
-.+.|...|+++.|+++-++.... .|+ +-.+|..|..+|...|+++.|+-.++.+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~--aPs--------------------eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTEL--ALD--------------------SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSS--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhc--Cch--------------------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345667789999999999988765 454 6789999999999999999999999987
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.26 E-value=2.5 Score=38.38 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=42.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCC-cHHhHHHHHHHHHccCChHHHHHHHHHH
Q 048780 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTP-DVVTYNIMIHGFCKEGQHQKANGLLLDM 317 (325)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (325)
.+-|.+.|+++-|+++-++.... .| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34466789999999998887632 44 4689999999999999999999888876
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.22 E-value=1.9 Score=33.93 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=52.4
Q ss_pred hHhHHHHHHHHHH-----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHh
Q 048780 220 SHVYTTYIDGLYK-----NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI-GRLKIAWDIFHMLM 282 (325)
Q Consensus 220 ~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~ 282 (325)
...|..+...|.+ -|+.++|.+.|++..+....-+..++......++.. |+.+.+.+.+++..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5678888999988 499999999999998765322467788888888885 99999999999988
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.55 E-value=10 Score=36.62 Aligned_cols=192 Identities=11% Similarity=0.026 Sum_probs=109.6
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHH--HHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--GFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
+...--.+..+|...|++++|.+.|++.. .|+..+......+.. ...........-..-|..++..+-+.+.++.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 44444556667788999999999998643 233322221111100 011111112223456888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 048780 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268 (325)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 268 (325)
++-....+..-.-+.. . ....|..+.+++...|++++|...+-.+.....+ ......|+...|..
T Consensus 920 ~fa~lAi~~~~~~~~~-~------------~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~ 984 (1139)
T 4fhn_B 920 EFSLLADASKETDDED-L------------SIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQ 984 (1139)
T ss_dssp HHHHHHHHHCCSCCHH-H------------HHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCChh-h------------HHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhC
Confidence 8877666542111100 0 1235888899999999999999999888765443 45667777777766
Q ss_pred CChH------------HHHHHHHHHhhCC-CCCCcHHhHHHHHHHHHccCChHHHHHH-HHHHH
Q 048780 269 GRLK------------IAWDIFHMLMQNP-GLTPDVVTYNIMIHGFCKEGQHQKANGL-LLDME 318 (325)
Q Consensus 269 g~~~------------~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~ 318 (325)
|..+ ++.+++..-.+.. .....+.-|..|-.-+...|++.+|-.+ |+...
T Consensus 985 ~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 985 GKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp CCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 6544 3444443221111 0111112245555555677777655544 44443
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.10 E-value=3.3 Score=28.43 Aligned_cols=127 Identities=13% Similarity=0.152 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHH---HHHHHHHHHHhcCc
Q 048780 35 TEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVV---TCTNIIDGLCKDGF 102 (325)
Q Consensus 35 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~ 102 (325)
-.|.+++..++..+..... +..-+|=++ +...+.++.+-+.+ |.. -.-.++.+|++.+
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF------Dis~C~NlKrVi~C~~~~n- 88 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF------DLDKCQNLKSVVECGVINN- 88 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS------CGGGCSCTHHHHHHHHHTT-
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc------CcHhhhcHHHHHHHHHHhc-
Confidence 3578888888888877542 222233222 33334444443332 222 2334555655543
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcC
Q 048780 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182 (325)
Q Consensus 103 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (325)
.+....+..++.....|.-++-.+++.++... .+ |++...-.+..+|.+.|
T Consensus 89 -------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~---------------------~~~~~l~kia~Ay~Klg 139 (172)
T 1wy6_A 89 -------TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NE---------------------VSASILVAIANALRRVG 139 (172)
T ss_dssp -------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CC---------------------SCHHHHHHHHHHHHHTT
T ss_pred -------chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CC---------------------CChHHHHHHHHHHHHhc
Confidence 45566788899999999999999999885332 22 36677778889999999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 048780 183 NVEDAVSLCREMLSEGIR 200 (325)
Q Consensus 183 ~~~~a~~~~~~m~~~g~~ 200 (325)
+..+|.+++.+.-+.|++
T Consensus 140 ~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 140 DERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHHTTCH
T ss_pred chhhHHHHHHHHHHhhhH
Confidence 999999999999888753
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.53 E-value=7.2 Score=31.44 Aligned_cols=163 Identities=12% Similarity=0.002 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc-
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF- 102 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~- 102 (325)
..|.++..=|.+.+++++|.+++-.--.. -....-+++-.+.+.-+.+.+.+.+ +++|......++..+.....
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~--ll~~~Q~~sg~DL~~llvevy~~~~---~~~~~~~~~rL~~L~~~~~~~ 110 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQT--LLRSGQGGSGGDLAVLLVDTFRQAG---QRVDGASRGKLLGCLRLFQPG 110 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHT---CCCCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCC
Confidence 35677777788889999988876543221 0011223444466666666666666 77777777777776665543
Q ss_pred --------------hhhcC--CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCC
Q 048780 103 --------------MMDQG--MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166 (325)
Q Consensus 103 --------------~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 166 (325)
-.+.| ..-|......+-..|.+.+++.+|..-|- .|-.++...+..++..+.........
T Consensus 111 ~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 111 EPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH
Confidence 01112 23466677778888899999999887772 24444456777777766554433333
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048780 167 DVYSYNILINGYCKDRNVEDAVSLCREMLS 196 (325)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (325)
+...-.+ +-.|...+++..|..+|+...+
T Consensus 187 dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 3333333 4445667899999998877764
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.86 E-value=3.2 Score=26.52 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHH
Q 048780 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 234 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
-..++|.-|-+.+...+. ....--+=+..+...|++++|..+.+..- .||...|.+|-. .+.|..+++...
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 357888888888877653 23233333456778999999998776543 899998887754 577888888877
Q ss_pred HHHHHHcC
Q 048780 314 LLDMEETG 321 (325)
Q Consensus 314 ~~~m~~~g 321 (325)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 77766555
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.67 E-value=3.3 Score=26.49 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHH
Q 048780 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313 (325)
Q Consensus 234 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (325)
-..++|.-|-+.+...+. ....--+=+..+...|++++|..+.+..- .||...|.+|-. .+.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 457888888888877653 23233333456778999999999877644 899998887754 566777777777
Q ss_pred HHHHHHcC
Q 048780 314 LLDMEETG 321 (325)
Q Consensus 314 ~~~m~~~g 321 (325)
+.++..+|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 76665554
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.34 E-value=16 Score=35.28 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 048780 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADA------TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (325)
-.+-.+|...|++++|.+.|.+.- .|+..+. .....+.........-..=|..++..+-+.+.++.+.+.-+.
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345567889999999999997643 2332211 112222111111112223467788888899999998887765
Q ss_pred HhhCC-CC-cC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHH
Q 048780 246 IGNHK-CV-LT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310 (325)
Q Consensus 246 m~~~~-~~-~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 310 (325)
..+.. .. ++ ...|..+++++...|++++|...+-.+. +... -......|+...+..|..+.-
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 54322 11 11 2368899999999999999999998776 3333 345677777777766665544
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.25 E-value=11 Score=31.91 Aligned_cols=177 Identities=11% Similarity=0.049 Sum_probs=108.3
Q ss_pred CcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---
Q 048780 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRA--- 201 (325)
Q Consensus 126 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~--- 201 (325)
|+++.|++.+-.+.+..-.. .....+......++..|...|+++...+.+..+.+. |..+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~----------------~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai 93 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQA----------------SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI 93 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSS----------------CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhc----------------cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH
Confidence 67888888776665432111 112224555666777788888888777766655432 2211
Q ss_pred -----------------ChhhHHHHHHHhCCCCC--------ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCcC
Q 048780 202 -----------------DATTYNTLFMAINNVPP--------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH--KCVLT 254 (325)
Q Consensus 202 -----------------~~~~~~~ll~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~ 254 (325)
+..+...++.....+.. .......|...+...|++.+|.+++..+... |....
T Consensus 94 ~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 94 QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 11112222221111111 1233467788899999999999999988542 22211
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCCc--HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 255 ---IETCNCLIDGLCKIGRLKIAWDIFHMLMQ---NPGLTPD--VVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 255 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
...+..-++.|...+++.+|..++.++.. ...-.|+ ..-+...+..+...+++.+|.+.|.+..
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34677788999999999999999988642 1111222 2345666677778889988888877764
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.23 E-value=5.1 Score=28.05 Aligned_cols=118 Identities=9% Similarity=0.017 Sum_probs=74.9
Q ss_pred ChhhHHHHHHHHHccCcH------HHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCC
Q 048780 111 DVVTLNVMTDNLSKDGKM------EEANCLLEVMIQRDVNPNTC-TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 183 (325)
|..+|-..+...-+.|++ +..+++|++.... ++|+.. .+...+..+. -|. + +...++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWI-----------rYA-~---~~ei~D 75 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQV-----------RFA-E---LKAIQE 75 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHH-----------HHH-H---HHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHH-----------HHH-H---HHHhcC
Confidence 566677777777777887 8888888877764 455321 1111111111 011 1 123488
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 048780 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263 (325)
Q Consensus 184 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 263 (325)
+++|.++|+.+++.+ +.-..+|-....--.+.|++..|.+++......+.+|. ......++
T Consensus 76 ~d~aR~vy~~a~~~h------------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 76 PDDARDYFQMARANC------------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp GGGCHHHHHHHHHHC------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 999999999997752 11245566667777899999999999999988887654 33343333
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.01 E-value=9.2 Score=29.68 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=48.0
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (325)
+....+.|+++++++....-.+. .|. |...-..+++.+|-.|+++.|.+-++...+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~--~P~--------------------da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA--SPK--------------------DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT--CTT--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCc--------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567889999999999888877 343 7778888999999999999999999888775
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.63 E-value=2.1 Score=29.13 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=41.6
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 62 (325)
+..+++.+++.+.+.+..-....+..|.-++.+.|++++|++..+.+.+. .|+..--.
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~ 115 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHH
Confidence 34577888888887653335666777788888888888888888888764 66654433
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.57 E-value=3.4 Score=28.52 Aligned_cols=56 Identities=18% Similarity=0.082 Sum_probs=38.6
Q ss_pred CcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 048780 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 60 (325)
+..+++.+++.+.+.+..-.......|.-++.+.|++++|++..+.+.+. .|+..-
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~Q 112 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH
Confidence 34567778888777653345555666777778888888888888888765 565543
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.33 E-value=13 Score=28.91 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=75.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 80 (325)
.|++++|+.....-.+.. +.|...=..|+..++-.|++++|..-++...+. .|+.
T Consensus 10 ~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~---------------------- 64 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEY---------------------- 64 (273)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGG----------------------
T ss_pred CCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--Cchh----------------------
Confidence 478889999988888776 678888888999999999999999999888765 2322
Q ss_pred CccCccHHHHHHHHHHHHhcCchhhcCCCC-----ChhhHHHHHHHHH--ccCcHHHHHHHHHHHHHC
Q 048780 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRP-----DVVTLNVMTDNLS--KDGKMEEANCLLEVMIQR 141 (325)
Q Consensus 81 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 141 (325)
.|....|..+|++=..+..+...+..| ...-...++.+.. ..|+.++|.++-+.+.+.
T Consensus 65 ---~~~a~~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 65 ---LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 233334444444443333333333222 1223344555554 459999999999888765
No 254
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=83.53 E-value=9.3 Score=29.38 Aligned_cols=88 Identities=3% Similarity=-0.089 Sum_probs=45.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCc---HHhHHHHHHHHHc
Q 048780 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIET--CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD---VVTYNIMIHGFCK 303 (325)
Q Consensus 229 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~ 303 (325)
..+..++.....++++.+.+.|..++... -.+.+...++.|+.+-+..+++. .|..++ ..-.+. +....+
T Consensus 188 ~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~g~~~~~~~~~g~t~-l~~A~~ 262 (285)
T 1wdy_A 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTA-LLLAVE 262 (285)
T ss_dssp HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS----SSCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----cCCCccccCCCCCcH-HHHHHH
Confidence 33455665556677777777776655321 12334445667888777766652 222222 111222 333344
Q ss_pred cCChHHHHHHHHHHHHcCCCCC
Q 048780 304 EGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 304 ~g~~~~a~~~~~~m~~~g~~pd 325 (325)
.|.. ++.+.+.+.|..||
T Consensus 263 ~~~~----~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 263 LKLK----KIAELLCKRGASTD 280 (285)
T ss_dssp TTCH----HHHHHHHHHSSCSC
T ss_pred cCcH----HHHHHHHHcCCCCC
Confidence 5554 34455556676654
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.13 E-value=20 Score=29.66 Aligned_cols=146 Identities=8% Similarity=-0.068 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH----------------------------HhCCCCCCh
Q 048780 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM----------------------------AINNVPPDS 220 (325)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~----------------------------~~~~~~~~~ 220 (325)
.....|...|.+.|+.++..+++...+.-=-.....-...+++ .....--..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGN-----HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 295 (325)
.+=.-+...|...|++.+|.+++..+.+ .+..--...|..-+..|...+++.++...+.......+-.+......
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Q ss_pred HHHHHHH------ccCChHHHHHHH
Q 048780 296 IMIHGFC------KEGQHQKANGLL 314 (325)
Q Consensus 296 ~li~~~~------~~g~~~~a~~~~ 314 (325)
..++.|. ..+++..|...|
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHH
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.96 E-value=7.7 Score=32.63 Aligned_cols=98 Identities=9% Similarity=-0.125 Sum_probs=68.5
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCcHHhHHH
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHK--CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN--PGLTPDVVTYNI 296 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~ 296 (325)
.+...+...|.+.|++++|.+.+.++...- ..--...+-..++.+...+++..+...+.+.... .+-.|+...--.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356677899999999999999999997642 2233567888899999999999999999887532 222333321111
Q ss_pred H--HHHHHccCChHHHHHHHHHHH
Q 048780 297 M--IHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 297 l--i~~~~~~g~~~~a~~~~~~m~ 318 (325)
. ...+...+++..|.+.|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 1 122356688999888877654
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.38 E-value=4 Score=29.02 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=56.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhC-CCCcC-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC------------
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNH-KCVLT-------IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG------------ 286 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~-~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------ 286 (325)
++.+...|.++.|+-+.+.+... +..|+ ..++..+.+++...|++.+|...|++..+...
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 66677778888887776665332 11122 13556677788888888888888877421100
Q ss_pred -----------CCCcHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048780 287 -----------LTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 287 -----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (325)
...+...---+..+|.+.+++++|+.+++.+.
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11111222335667888899999998887653
No 258
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.56 E-value=0.44 Score=40.56 Aligned_cols=162 Identities=10% Similarity=0.052 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHHHhcCc---hhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---
Q 048780 86 DVVTCTNIIDGLCKDGF---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--- 159 (325)
Q Consensus 86 ~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--- 159 (325)
++.+=+.|+-+|++.++ +++.-..|+..-...+-+-|...|.++.|.-+|..+..-. -|-..+.+
T Consensus 115 e~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a---------kLAstLV~L~~ 185 (624)
T 3lvg_A 115 ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG---------RLASTLVHLGE 185 (624)
T ss_dssp STTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT---------TTSSSSSSCSG
T ss_pred ccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH---------HHHHHHHHHHH
Confidence 44555688889998888 4444556777777788888888888888877775432211 00000000
Q ss_pred -----hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcC
Q 048780 160 -----WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234 (325)
Q Consensus 160 -----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~ 234 (325)
....-.-++.+|.-+-.+|...+.+.-|.-.--.+.-.. .-...++..|-..|
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha----------------------deL~elv~~YE~~G 243 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA----------------------DELEELINYYQDRG 243 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----------------------SCCSGGGSSSSTTC
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH----------------------HHHHHHHHHHHhCC
Confidence 011122367788888888888888877655544443221 11122356677788
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048780 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (325)
.+++-+.+++.-.... ......|+-|--.|++- ++++..+.++.
T Consensus 244 ~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 244 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp CCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 8888888887765332 34677888888888875 45555554443
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.50 E-value=22 Score=28.36 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHh
Q 048780 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK 99 (325)
Q Consensus 24 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 99 (325)
..|.++..=|.+.+++++|.+++..--.. -.+..-+++-.+.+.-+.+...+.+ .+++......++..+..
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~--ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGALS--FLKAKQGGSGTDLIFYLLEVYDLAE---VKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTT---CCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH
Confidence 35667777778888888888886554321 0011224444466666666666666 67777776666665543
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.63 E-value=22 Score=29.90 Aligned_cols=101 Identities=12% Similarity=-0.040 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh-
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN- 248 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~- 248 (325)
+...+...|.+.|++++|.+.|.++...-.. ...-...+-.+++.+...+++..+...+++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---------------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---------------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---------------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5667888999999999999999999875322 223345677779999999999999999887743
Q ss_pred --CCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048780 249 --HKCVLTIET--CNCLIDGLCKIGRLKIAWDIFHMLMQNP 285 (325)
Q Consensus 249 --~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 285 (325)
.+..|+... ...-...+...+++..|.+.|-......
T Consensus 198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 232333221 1111222446788999888887765333
No 261
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=78.10 E-value=19 Score=26.81 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=15.4
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 048780 119 TDNLSKDGKMEEANCLLEVMIQRDVNPN 146 (325)
Q Consensus 119 l~~~~~~g~~~~a~~~~~~m~~~g~~~~ 146 (325)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3444555666666666665555554443
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.67 E-value=14 Score=25.12 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=44.2
Q ss_pred CChHhHHHHHHHHHHcCC---HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 218 PDSHVYTTYIDGLYKNGF---VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
|+..+--.+..++++..+ ..+++.+++.+.+.+..-.....--|.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444455666766665 446778888777665222345556667788889999999998888873
No 263
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=77.01 E-value=12 Score=27.10 Aligned_cols=137 Identities=7% Similarity=0.009 Sum_probs=74.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCC
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK-NGFVLEAMKVFSAIGNHKCV 252 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~ 252 (325)
.+...+..|+.+.-.++.+.+.+.|..++... ..-++.|..++.. ..+.....++.+.+.+.|..
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d--------------~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad 106 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRT--------------KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD 106 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC--------------TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC
Confidence 45555677888777888888999987776432 2222333333322 23445566778888888877
Q ss_pred cCHH---HHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCcHHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048780 253 LTIE---TCNCLIDGLCKIGRL-KIAWDIFHMLMQNPGLTPDVVTY--NIMIHGFCKEGQHQKANGLLLDMEETGLEP 324 (325)
Q Consensus 253 ~~~~---~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 324 (325)
++.. -.++.+...+..+.. ..-..+++.+....|..++.... .+-+....+.|..+-+.-+.+.+.+.+++.
T Consensus 107 in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 107 ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 6543 221223333333332 34455666666226665543221 123444456677665555555555566654
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.59 E-value=13 Score=28.53 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=12.0
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 048780 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPN 146 (325)
Q Consensus 118 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 146 (325)
.+...+..|+.+ +++.+.+.|..++
T Consensus 42 ~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 42 PLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 444555556654 3334444555443
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.85 E-value=12 Score=26.19 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048780 4 ASGGFVLLGRILMSCFTP-NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 56 (325)
.+++.++|..|..+|+-. -+..|......+-..|++.+|.+||+.-.+.+-+|
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 456888999999887654 44567778888888999999999999988877666
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.95 E-value=31 Score=27.78 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=44.1
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHH--
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC-- 191 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-- 191 (325)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++-
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA------------------------------------~~ll~~~Q~~sg~DL~~l 80 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS------------------------------------QTLLRSGQGGSGGDLAVL 80 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------------------------------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH------------------------------------HHHHHCCCcchHHHHHHH
Confidence 66777888888899998888765422 2233445544443333
Q ss_pred --HHHHHcCCCCChhhHHHHHHHhCCCCCChH
Q 048780 192 --REMLSEGIRADATTYNTLFMAINNVPPDSH 221 (325)
Q Consensus 192 --~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 221 (325)
+-+.+.++++|..+...++.....++|+..
T Consensus 81 lvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p 112 (336)
T 3lpz_A 81 LVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP 112 (336)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence 444556677777666666665555555443
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.45 E-value=15 Score=23.50 Aligned_cols=70 Identities=11% Similarity=0.000 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH-------HHHHHHHHHHH
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------LVALNLFEEMV 76 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-------~~a~~~~~~~~ 76 (325)
-++|..+-+.+...+- ...+--.=+..+...|++++|..+.+.+. .||...|-.+. +.+...+..+.
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4567777777777642 33333333455678899999998877665 89999998887 44444444666
Q ss_pred Hhc
Q 048780 77 NEF 79 (325)
Q Consensus 77 ~~~ 79 (325)
..+
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 555
No 268
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.62 E-value=15 Score=26.05 Aligned_cols=55 Identities=7% Similarity=-0.029 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 048780 5 SGGFVLLGRILMSCFTPN-MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59 (325)
Q Consensus 5 ~~A~~l~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 59 (325)
+.+.++|..|..+|+-.. +..|......+-..|++.+|.+||+.-.+.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 567889999998876544 4567777888888999999999999988887666443
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.33 E-value=16 Score=23.39 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH-------HHHHHHHHHHH
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------LVALNLFEEMV 76 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-------~~a~~~~~~~~ 76 (325)
-++|..+-+.+...+- ...+--.=+..+...|++++|..+.+.+. .||...|-.+. +.+...+..+.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4677777777777652 33333333456678999999999887766 89999998887 33444444555
Q ss_pred Hhc
Q 048780 77 NEF 79 (325)
Q Consensus 77 ~~~ 79 (325)
..+
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 544
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.69 E-value=22 Score=24.54 Aligned_cols=67 Identities=19% Similarity=0.141 Sum_probs=45.3
Q ss_pred CChHhHHHHHHHHHHcCC---HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048780 218 PDSHVYTTYIDGLYKNGF---VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284 (325)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 284 (325)
|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444555555677777665 4467788888776543223444555666888999999999999888743
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.57 E-value=16 Score=26.92 Aligned_cols=53 Identities=15% Similarity=0.052 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048780 4 ASGGFVLLGRILMSCFTP-NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 56 (325)
..++.++|..|...|+-. -...|......+...|++.+|.+||+.-.+.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 348889999999987654 44567888888889999999999999988876666
No 272
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=68.11 E-value=33 Score=25.28 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=32.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCc---HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 048780 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPD---VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323 (325)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 323 (325)
+...+..|+.+-+..+++. |..++ ..-. +.+...+..|+.+-+..+++.+.+.|-.
T Consensus 125 L~~A~~~~~~~~v~~Ll~~-----ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLLIEH-----GADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCHHHHHHHHHC-----CCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 3444567777766666543 22222 1112 3344456678888777777887777653
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.76 E-value=34 Score=25.20 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=48.4
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048780 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201 (325)
Q Consensus 125 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 201 (325)
.++..++.++|..|...|+-.. -...|......+-..|++.+|.++|+.-.+.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~--------------------~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTK--------------------LSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTT--------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHH--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5567899999999999987654 45678888888889999999999999999887666
No 274
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=65.03 E-value=31 Score=25.38 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=7.4
Q ss_pred HHhcCChHHHHHHHH
Q 048780 265 LCKIGRLKIAWDIFH 279 (325)
Q Consensus 265 ~~~~g~~~~a~~~~~ 279 (325)
.+..|+.+-+..+++
T Consensus 146 A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 146 AAAKGNLKMVHILLF 160 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344566555544443
No 275
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.44 E-value=24 Score=26.47 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHhcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048780 4 ASGGFVLLGRILMSCFTPN-MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 56 (325)
.+.+.++|..|...|+-.. ...|......+-..|++.+|.+||+.-.+.+-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3567889999998876544 4567778888888999999999999988877666
No 276
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.59 E-value=36 Score=23.71 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCcHHh
Q 048780 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR--LKIAWDIFHMLMQNPGLTPDVVT 293 (325)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~ 293 (325)
..+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+. ..++-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~-~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HCCCcCHHHH
Confidence 3466788999999999999999998643221 23444555555555433 456788888877 4454444333
No 277
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=58.05 E-value=15 Score=19.80 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHHhcCCCC
Q 048780 3 RASGGFVLLGRILMSCFTP 21 (325)
Q Consensus 3 ~~~~A~~l~~~~~~~~~~~ 21 (325)
|+..|+++++.+.+.|--|
T Consensus 8 Dv~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 4556666666666665333
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.35 E-value=41 Score=22.62 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCcHHh
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR--LKIAWDIFHMLMQNPGLTPDVVT 293 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~ 293 (325)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+. ..|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~-~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HCCCcCHHHH
Confidence 456788999999999999999998643222 23444555556655442 466888888887 4554444443
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.02 E-value=96 Score=26.80 Aligned_cols=62 Identities=13% Similarity=-0.027 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CcCHH--HHH-HHHHHHHhcCChHHHHHHHHHHh
Q 048780 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC-VLTIE--TCN-CLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~--~~~-~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.++|.+++.|...+.++.|..+.....-... .+|.. .|. -+-+.++-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3488899999999999999999988753211 12222 222 23345566788888887777654
No 280
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=56.83 E-value=41 Score=24.14 Aligned_cols=137 Identities=9% Similarity=0.106 Sum_probs=71.2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 048780 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC-KDRNVEDAVSLCREMLS 196 (325)
Q Consensus 118 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 196 (325)
.+...+..|+.+.-.++.+.+.+.|..++... ..-++.|..++. ...+.....++.+.+.+
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d------------------~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~ 102 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRT------------------KEGTTLFFPLFQGGGNDITGTTELCKIFLE 102 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC------------------TTCCCTHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC------------------CCCCcHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 44556667777777888888899998776432 111222222222 23345566778888888
Q ss_pred cCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCH-HHHHHHHHHHhh-CCCCcCHH---HHHHHHHHHHhcCCh
Q 048780 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV-LEAMKVFSAIGN-HKCVLTIE---TCNCLIDGLCKIGRL 271 (325)
Q Consensus 197 ~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~-~~~~~~~~---~~~~ll~~~~~~g~~ 271 (325)
.|..++... ..-.+..+...+..+.. ..-..+++.+.+ .|..++.. -.+. +...++.|..
T Consensus 103 ~Gadin~~d--------------~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp-L~~A~~~~~~ 167 (186)
T 3t8k_A 103 KGADITALY--------------KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA-LEFVKRCQKP 167 (186)
T ss_dssp TTCCSSSCB--------------GGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH-HHHHHTTTCH
T ss_pred CCCCCCccC--------------CCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH-HHHHHHcCCH
Confidence 887765432 11110112222223322 344566777777 67665432 2223 3334556665
Q ss_pred HHHHHHHHHHhhCCCCC
Q 048780 272 KIAWDIFHMLMQNPGLT 288 (325)
Q Consensus 272 ~~a~~~~~~~~~~~~~~ 288 (325)
+.+.-+.+. .++.+++
T Consensus 168 ~~v~~L~~~-~~~~~~~ 183 (186)
T 3t8k_A 168 IALKMMEDY-IKKYNLK 183 (186)
T ss_dssp HHHHHHHHH-HHHHTCC
T ss_pred HHHHHHHHH-HHHHhcc
Confidence 544444433 3344444
No 281
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=56.66 E-value=76 Score=26.91 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHH-HHHHhcCCHHHHHHHH
Q 048780 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILI-NGYCKDRNVEDAVSLC 191 (325)
Q Consensus 113 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~ 191 (325)
...+.+++.|.+.|+...+..++..+...+..|+...|.. ...++|.-.+ ..+...+++.+|.+.+
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~-------------~q~v~Y~YYlGr~~~~~~~y~~A~~~L 243 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQL-------------DQQIEYRYLLGRYYLLNSQVHNAFVQF 243 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCc-------------cceEeeeHHHHHHHHHHccHHHHHHHH
Confidence 4568889999999999999999999998877554333211 1334444433 4556778888888877
Q ss_pred HHHHHc
Q 048780 192 REMLSE 197 (325)
Q Consensus 192 ~~m~~~ 197 (325)
.+..+.
T Consensus 244 ~~A~~~ 249 (455)
T 3t5v_B 244 NEAFQS 249 (455)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665543
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.92 E-value=76 Score=25.28 Aligned_cols=159 Identities=13% Similarity=0.000 Sum_probs=80.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHH----
Q 048780 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS---- 189 (325)
Q Consensus 114 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~---- 189 (325)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga------------------------------------~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA------------------------------------LSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------------------------------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH------------------------------------HHHHHCCCcchHHHHHHH
Confidence 56777778888888888888765422 23344566555444
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 048780 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269 (325)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 269 (325)
+.+-+.+.+++++......++.....++|+......+++.. +..-...... ..-++.....+-..|.+.|
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~a---------i~WS~~~g~~-~~Gdp~LH~~~a~~~~~e~ 148 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGM---------NNWSIKFSEY-KFGDPYLHNTIGSKLLEGD 148 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHH---------HHHHHHTSSC-TTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHH---------HHHHhhcCCC-CCCCHHHHHHHHHHHhhcC
Confidence 34555566777777777777666555555443322222221 1111111000 1124455555555566666
Q ss_pred ChHHHHHHHH----------------HHhhC-CCCC--CcHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048780 270 RLKIAWDIFH----------------MLMQN-PGLT--PDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 270 ~~~~a~~~~~----------------~~~~~-~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
++.+|+..|- ...+. .|.+ ++...-.++ --|.-.|+...|..+++...+
T Consensus 149 ~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 149 FVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 6655555431 11110 0211 122222222 235566888888888887653
No 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.88 E-value=30 Score=26.18 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=22.7
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCc
Q 048780 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147 (325)
Q Consensus 118 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 147 (325)
.+...++.|+.+....+++.+.+.|..++.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~ 37 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTD 37 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcch
Confidence 455667789999988888888887766653
No 284
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=54.25 E-value=0.1 Score=44.28 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=53.0
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHH
Q 048780 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298 (325)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 298 (325)
...+|+.|..+....+++.+|++-|-+. -|+..|..++.+..+.|.+++-.+.+...+ +..-.|.+.| .|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~ke~~IDt--eLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARESYVET--ELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCCSTTTTH--HHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcccccHH--HHH
Confidence 4456777777777777766666544221 155567777777778888887777776554 4433444443 777
Q ss_pred HHHHccCChHHH
Q 048780 299 HGFCKEGQHQKA 310 (325)
Q Consensus 299 ~~~~~~g~~~~a 310 (325)
-+|++.++..+.
T Consensus 124 ~ayAk~~rL~el 135 (624)
T 3lvg_A 124 FALAKTNRLAEL 135 (624)
T ss_dssp HHHHTSCSSSTT
T ss_pred HHHHhhCcHHHH
Confidence 788777765543
No 285
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=52.19 E-value=48 Score=21.84 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=30.5
Q ss_pred CChHhHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
+|......++..+-.. ++.|+++.+...+ .|+ .+.++...++...+.|-++.. +.|..|.
T Consensus 19 ~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~~m~ 79 (119)
T 1wty_A 19 KDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWLEML 79 (119)
T ss_dssp CCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 3444444555554443 4555555544433 344 345566666666666655444 3444444
No 286
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.99 E-value=86 Score=24.75 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=42.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVL---TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (325)
+...+..|..+.+..++.. .|..+ |..-.+.|..| ++.|+.+-+.-+ . +.|..++..+ . +...++
T Consensus 243 L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~L----l-~~GAd~n~~~--~-L~~A~~ 310 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKKIAELL----C-KRGASTDCGD--L-VMTARR 310 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHH----H-TTSCSSTTCC--H-HHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHHHHHHH----H-HCCCCCCCCC--H-HHHHHH
Confidence 3445566777766555432 22222 22223344444 466776555444 3 4566666554 3 333445
Q ss_pred cCChHHHHHHHHHHHHcCCCCC
Q 048780 304 EGQHQKANGLLLDMEETGLEPN 325 (325)
Q Consensus 304 ~g~~~~a~~~~~~m~~~g~~pd 325 (325)
.|+.+ +.+.+.+.|-.||
T Consensus 311 ~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 311 NYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp TTCHH----HHHHHHHTTCCC-
T ss_pred cCCHH----HHHHHHHCcCCCC
Confidence 56644 4556667776654
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.25 E-value=53 Score=22.85 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC--hHHHHHHHHHHHHcCC
Q 048780 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ--HQKANGLLLDMEETGL 322 (325)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 322 (325)
....++.-|...|+.++|.+.++++. ...+ -.......+..++-+.++ .+.+..++..+...|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~-~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE-VPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT-CGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC-CCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999986 2111 123344555556665432 4577888888887765
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.24 E-value=62 Score=24.28 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048780 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201 (325)
Q Consensus 129 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 201 (325)
+++.++|..|...|+-.. -...|......+-..|++.+|.++|+.-.+.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~--------------------~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQE--------------------SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTT--------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchh--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 577799999999987654 45678888888889999999999999999887666
No 289
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.88 E-value=52 Score=22.58 Aligned_cols=45 Identities=9% Similarity=0.134 Sum_probs=32.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
+..+...+ .-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 25 l~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 25 LEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 44455555 6688999999988877777777777778888777543
No 290
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=50.83 E-value=64 Score=22.91 Aligned_cols=103 Identities=12% Similarity=0.009 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 170 SYNILINGYCKDRNVEDAVSLCREMLSEG-IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
.+-.-+..+...|.++.|.-+.+.+.... ..|+..+-.. -..++..+.+++...+++.+|...|++...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~----------~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQ----------KYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHH----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34445677888899999998888766431 1122111000 123556778899999999999999988532
Q ss_pred CC------------------------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 249 HK------------------------CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 249 ~~------------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
.. ...+...---+-.+|.+.+++++|..+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 10 00111222346778999999999999998875
No 291
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.32 E-value=58 Score=22.29 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=33.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34555556666778888888888776677777777778888777543
No 292
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=50.27 E-value=56 Score=22.07 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=34.9
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 226 YIDGLYKNG-FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 226 l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 355555555 67789999999988877778888777788888887654
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.85 E-value=78 Score=24.42 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 048780 29 LIKGLCTEGRILEAARLF 46 (325)
Q Consensus 29 ll~~~~~~g~~~~a~~~~ 46 (325)
.+...++.|+.+-+..++
T Consensus 34 ~L~~A~~~g~~~~v~~Ll 51 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLL 51 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344445566655444443
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.83 E-value=61 Score=22.38 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
.++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-+.
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345566666677788999999888776777777777788888877543
No 295
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=48.43 E-value=50 Score=20.96 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 048780 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGR 38 (325)
Q Consensus 6 ~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 38 (325)
.|.++.+++..-|+.|+..+...++..|...+-
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 467788888888999998999999999888875
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.61 E-value=1.1e+02 Score=24.86 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048780 26 FNSLIKGLCTEGRILEAARLFKKLN 50 (325)
Q Consensus 26 ~~~ll~~~~~~g~~~~a~~~~~~m~ 50 (325)
...+|.-|...|+.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4667888889999999999998875
No 297
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.52 E-value=85 Score=23.39 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCCcCHH-------HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 236 VLEAMKVFSAIGNHKCVLTIE-------TCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 236 ~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
++.|+.+|+.+.+....++.. .-...+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 567888888887654222211 112456678899999999999998873
No 298
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=47.21 E-value=81 Score=23.04 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 048780 29 LIKGLCTEGRILEAARLFKKL 49 (325)
Q Consensus 29 ll~~~~~~g~~~~a~~~~~~m 49 (325)
.+...++.|+++.+..+++.-
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC
T ss_pred hHHHHHHhCCHHHHHHHHHhc
Confidence 366667788888887777654
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.37 E-value=64 Score=21.64 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC--hHHHHHHHHHHHHcCC
Q 048780 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ--HQKANGLLLDMEETGL 322 (325)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 322 (325)
....++.-|...|+.++|.+.++++. ...+. .......+..++-+.++ .+.+..++..+...|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~-~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT-CGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC-CCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 35678999999999999999999986 22111 23344555566666542 4678888888887775
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.28 E-value=49 Score=24.65 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHhcCCCCchh--h-----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048780 4 ASGGFVLLGRILMSCFTPNMV--T-----FNSLIKGLCTEGRILEAARLFKKLNV 51 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~--~-----~~~ll~~~~~~g~~~~a~~~~~~m~~ 51 (325)
++.|+.+|+.+.+.-..++.. . --..+..|.+.|.+++|.++|++.-.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 467999999998764222221 1 12455678999999999999999875
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.99 E-value=73 Score=22.20 Aligned_cols=53 Identities=6% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048780 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201 (325)
Q Consensus 129 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 201 (325)
+++.++|..|...|+-.. -...|......+-..|++.+|.++|+.-.+.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~--------------------~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTL--------------------SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTT--------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHH--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 348999999999987654 45678888888889999999999999999887666
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.54 E-value=63 Score=22.30 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHHHcC-CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 227 IDGLYKNG-FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 227 ~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
+..+...+ ..-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 23 l~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 23 LEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 44454555 56779999999988877778888777788888888654
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.12 E-value=98 Score=23.41 Aligned_cols=88 Identities=16% Similarity=0.060 Sum_probs=56.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhC--CCCc----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHH
Q 048780 227 IDGLYKNGFVLEAMKVFSAIGNH--KCVL----TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 300 (325)
++.+....++++|.+++++.++. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHHH
Confidence 88899999999999999877542 2221 11222333443344344445555666654 3 4456666777888
Q ss_pred HHccCChHHHHHHHHHHH
Q 048780 301 FCKEGQHQKANGLLLDME 318 (325)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~ 318 (325)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 999999999999876654
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.20 E-value=83 Score=22.31 Aligned_cols=19 Identities=5% Similarity=0.051 Sum_probs=9.9
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 048780 227 IDGLYKNGFVLEAMKVFSA 245 (325)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~ 245 (325)
+...+..|+.+-+..+++.
T Consensus 110 L~~A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLED 128 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344556666555555443
No 305
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.82 E-value=86 Score=22.40 Aligned_cols=78 Identities=10% Similarity=-0.078 Sum_probs=32.2
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHH
Q 048780 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299 (325)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 299 (325)
..+....+.++.+.++.+.. ..+..+.. .++...-...+.+..+.++.+....+.. +.. .++...-...+.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~----d~~~~vr~~A~~ 160 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIK-ALK----DEDGWVRQSAAD 160 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHH-HTT----CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHc----CCCHHHHHHHHH
Confidence 33344445555555543322 22222222 2344444445555555554332222222 221 234444445555
Q ss_pred HHHccCC
Q 048780 300 GFCKEGQ 306 (325)
Q Consensus 300 ~~~~~g~ 306 (325)
++.+.|.
T Consensus 161 aL~~~~~ 167 (201)
T 3ltj_A 161 ALGEIGG 167 (201)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 5555544
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=43.27 E-value=90 Score=22.46 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=75.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC-----
Q 048780 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD-SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK----- 250 (325)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----- 250 (325)
+|-+..++..|...++.+....+..|+..-..+-...- -+.| ...++.+...|...|+.++|...+..--...
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv-d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV-DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC-CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee-ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 67788999999999999997665533222111100111 1233 3456777888889999999999876432211
Q ss_pred ---------CCcCHHHHHHHHHHHHhcC----ChHHHH--------HHHHHHhhCCCCCCcHHhHHHH--HHHHHccCCh
Q 048780 251 ---------CVLTIETCNCLIDGLCKIG----RLKIAW--------DIFHMLMQNPGLTPDVVTYNIM--IHGFCKEGQH 307 (325)
Q Consensus 251 ---------~~~~~~~~~~ll~~~~~~g----~~~~a~--------~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~ 307 (325)
+.-....-+.+++. +.| .+.... ...++.+ +.-|-..+|-.- ...|...|..
T Consensus 150 vEnliyeN~vp~~~d~~~i~~~~--~~~i~~~y~~d~~~lHe~~s~~~ikkY~---n~iPGiGSY~va~aa~~yf~lg~~ 224 (242)
T 3kae_A 150 VENLLLENKVPQKRDKENVRQTG--RRGIEEEYVSDSIEFHESLSPSLVKKYM---EHVPGIGSYFISNAARRYFNLGMN 224 (242)
T ss_dssp HHHHHHTTCCCCCC-------------CHHHHHHHHHHHHHHHCCHHHHHHHH---TSTTTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhcCCCcccchHHHHhhh--hccchhhhhhhHHHHHHhccHHHHHHHH---HhCCCchhHHHHHHHHHHHhcccc
Confidence 11000000111110 000 011111 1222222 346666665433 3457789999
Q ss_pred HHHHHHHHHHHHcC
Q 048780 308 QKANGLLLDMEETG 321 (325)
Q Consensus 308 ~~a~~~~~~m~~~g 321 (325)
++...+|..++...
T Consensus 225 d~s~~lf~~lR~kD 238 (242)
T 3kae_A 225 DKSKACFELVRRKD 238 (242)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHhcC
Confidence 99999999887653
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.52 E-value=1.1e+02 Score=24.53 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=15.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048780 175 INGYCKDRNVEDAVSLCREMLSEGIRA 201 (325)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~g~~~ 201 (325)
+...+..|+.+-+..+++.-...|..+
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 334456677777776666654444433
No 308
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=41.83 E-value=41 Score=19.04 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHH-Hhc
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGL-CTE 36 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~-~~~ 36 (325)
.++|...|-.|++..-.++..+|...|+.+ .+-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 467888888887764456668888888887 544
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=40.97 E-value=1.3e+02 Score=24.21 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHH
Q 048780 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK-DRNVEDAVSLCREM 194 (325)
Q Consensus 116 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m 194 (325)
..++.-|...|+.++|.+.++++...... ...+...+..++-+ ...-+.+..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~----------------------~~~v~~~i~~~le~~~~~re~~~~Ll~~L 72 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLL----------------------FIFVRHGVESTLERSAIAREHMGQLLHQL 72 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGH----------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccH----------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q ss_pred HHcCCCCChhhHHHHHH------HhCCCCCChHhHHHHHHHHHHcCCH----HHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 048780 195 LSEGIRADATTYNTLFM------AINNVPPDSHVYTTYIDGLYKNGFV----LEAMKVFSAIGNHKCVLTIETCNCLIDG 264 (325)
Q Consensus 195 ~~~g~~~~~~~~~~ll~------~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 264 (325)
.+.|+-+.......+-+ ...--.|....+-.-+-+.+-.... +-...+.+.+...| ........++..
T Consensus 73 ~~~~~is~~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~ 150 (339)
T 1ug3_A 73 LCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGL 150 (339)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHH
Q ss_pred HHhcCChHHHHHHHHH
Q 048780 265 LCKIGRLKIAWDIFHM 280 (325)
Q Consensus 265 ~~~~g~~~~a~~~~~~ 280 (325)
+.+....+.+.++|..
T Consensus 151 l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 151 LCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHCHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHH
No 310
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=40.14 E-value=52 Score=22.02 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 446666666777889999999988877778888777788888887543
No 311
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=38.45 E-value=2.1e+02 Score=25.38 Aligned_cols=230 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHH--HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHh
Q 048780 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILE--AARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78 (325)
Q Consensus 1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~--a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~ 78 (325)
.|+-++|......+-..| .......+.++..+.+.|.+.. ..+=++.+...|-..........
T Consensus 115 ~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~-------------- 179 (618)
T 1qsa_A 115 TGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ-------------- 179 (618)
T ss_dssp TTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT--------------
T ss_pred cCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh--------------
Q ss_pred cCCccCccHHHHHHHHHHHHhcCc---hhhcCCCCChhhHHHHHHHHHcc--CcHHHHHHHHHHHHHCCCCCCcccHHHH
Q 048780 79 FGVICKPDVVTCTNIIDGLCKDGF---MMDQGMRPDVVTLNVMTDNLSKD--GKMEEANCLLEVMIQRDVNPNTCTYNTL 153 (325)
Q Consensus 79 ~~~~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~l 153 (325)
+.++...+...+.+..+... -......++...-..+..++.+. .+.+.|...|......+...+..
T Consensus 180 ----l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~----- 250 (618)
T 1qsa_A 180 ----MPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQ----- 250 (618)
T ss_dssp ----CCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHH-----
T ss_pred ----CCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHH-----
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHc
Q 048780 154 MDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233 (325)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~ 233 (325)
....+..+.......+...++...+...... ..+.....-.+....+.
T Consensus 251 -------------~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 251 -------------IQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-------------------SQSTSLIERRVRMALGT 298 (618)
T ss_dssp -------------HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-------------------CCCHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHcCCChHHHHHHHhcccc-------------------CCChHHHHHHHHHHHHC
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 048780 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287 (325)
Q Consensus 234 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (325)
|+++.|...|+.|...... ...-.--+-+++...|+.++|..+|..+....++
T Consensus 299 ~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~f 351 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGF 351 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSH
T ss_pred CCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCh
No 312
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.33 E-value=61 Score=21.46 Aligned_cols=42 Identities=12% Similarity=-0.037 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048780 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV 51 (325)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 51 (325)
+|+.+....+.|++..--.-|..+...++|+.|..+.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555544444444555678899999999888775
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.97 E-value=1.4e+02 Score=23.00 Aligned_cols=14 Identities=0% Similarity=-0.209 Sum_probs=6.4
Q ss_pred HHHHHHccCcHHHH
Q 048780 118 MTDNLSKDGKMEEA 131 (325)
Q Consensus 118 ll~~~~~~g~~~~a 131 (325)
.+...+..|+.+-+
T Consensus 65 ~L~~A~~~g~~~~v 78 (285)
T 3kea_A 65 PLHQAATLEDTKIV 78 (285)
T ss_dssp HHHHHTTSSSCHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 33444455554433
No 314
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.78 E-value=1.1e+02 Score=21.48 Aligned_cols=72 Identities=10% Similarity=0.106 Sum_probs=49.0
Q ss_pred HHHHHHHHH-HHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCcCHHHHHH
Q 048780 184 VEDAVSLCR-EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH--KCVLTIETCNC 260 (325)
Q Consensus 184 ~~~a~~~~~-~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ 260 (325)
.+.+.+-+. .+++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR------------------~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYR 74 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR------------------EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYR 74 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH------------------HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH------------------HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 344454444 4456677665433 33466667777788899999999887 76777777777
Q ss_pred HHHHHHhcCChHH
Q 048780 261 LIDGLCKIGRLKI 273 (325)
Q Consensus 261 ll~~~~~~g~~~~ 273 (325)
-+..+...|-+.+
T Consensus 75 tL~~L~e~Glv~~ 87 (162)
T 4ets_A 75 TLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHTTSEEE
T ss_pred HHHHHHHCCCEEE
Confidence 7888888886543
No 315
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.30 E-value=1.1e+02 Score=21.58 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048780 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202 (325)
Q Consensus 129 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 202 (325)
+.+.++|..|...|+-.. -...|......+-..|++.+|.++|..-.+.+-+|-
T Consensus 77 ~~p~~if~~L~~~~IG~~--------------------~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVS--------------------LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTT--------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchh--------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 347789999999987654 456677788888899999999999999999876663
No 316
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.01 E-value=47 Score=22.61 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChH
Q 048780 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272 (325)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 272 (325)
..++..+...+..-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3446666666667789999999988877778888777788888888653
No 317
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.78 E-value=1.2e+02 Score=21.79 Aligned_cols=17 Identities=18% Similarity=-0.050 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHhcCC
Q 048780 254 TIETCNCLIDGLCKIGR 270 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~ 270 (325)
+...-...+.++.+.|+
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333344444444443
No 318
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.64 E-value=91 Score=22.89 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCCCCcCHH----HHHHHHHHHHhcCChHHHHHHHHHHh
Q 048780 236 VLEAMKVFSAIGNHKCVLTIE----TCNCLIDGLCKIGRLKIAWDIFHMLM 282 (325)
Q Consensus 236 ~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~ 282 (325)
++.|+.+|+.+.+..-.+-.. .-...+..|.+.|.+++|.++|+...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 566777777765543111111 11334567888999999999998865
No 319
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.16 E-value=1.3e+02 Score=21.79 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCCCchh--hHHHHHHHHHhcCCHHHHHHHH
Q 048780 8 FVLLGRILMSCFTPNMV--TFNSLIKGLCTEGRILEAARLF 46 (325)
Q Consensus 8 ~~l~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~ 46 (325)
.++++.+.+.|..++.. .-.+.+...++.|+.+-+..++
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 34556666666554432 1223556667777765444443
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.11 E-value=1.3e+02 Score=21.79 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=26.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHh--HHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048780 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT--YNIMIHGFCKEGQHQKANGLLLDMEETG 321 (325)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g 321 (325)
.+...+..|+.+-+..+++. |..++... -.+.+....+.|+.+-+.-+++.-.+.|
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEA-----GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHH-----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 34445567777766666554 22222110 1123444566677766666655544444
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.82 E-value=76 Score=18.87 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIG-RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
+.+.+.|.+++..- ..++..+...+ ..-.+.++++.+. +.+...+..|....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~-~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLI-DMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556676666544 34455555443 4455677777765 33334456666666666666654
No 322
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.79 E-value=90 Score=20.63 Aligned_cols=42 Identities=17% Similarity=0.047 Sum_probs=29.7
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048780 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 242 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 283 (325)
+|+.+.+..+.|+...--.-+..+...++++.|..+.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666766655544555566788999999999988773
No 323
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.01 E-value=1.6e+02 Score=25.54 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCcH--HhHHH-HHHHHHccCChHHHHHHHHHHHH
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-GLTPDV--VTYNI-MIHGFCKEGQHQKANGLLLDMEE 319 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~--~~~~~-li~~~~~~g~~~~a~~~~~~m~~ 319 (325)
-...+|.+++.|...+.++.|..+..+.. -. .-.++. .+|.. +-+.+.-.+++.+|.+.+.....
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678999999999999999999999875 11 111221 23332 23456677899999888876543
No 324
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=32.81 E-value=35 Score=22.70 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=40.6
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190 (325)
Q Consensus 111 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (325)
....|.-.|...+.+++.+-|.++++...+.| +...|.+++-.|-..=++|-++++
T Consensus 31 kDkLykDAietAa~S~d~elaEeLL~yFVe~g------------------------~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 31 KDSLYKDAMQYASESKDTELAEELLQWFLQEE------------------------KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC------------------------SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------chHHHHHHHHHHHhccChHHHHHH
Confidence 34467778899999999999999999998887 445555666665555555555543
No 325
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.98 E-value=72 Score=20.07 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHH
Q 048780 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRIL 40 (325)
Q Consensus 4 ~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 40 (325)
.++|.++++.+...| ..+|..++.++...|...
T Consensus 53 ~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 53 RDQARQLIIDLETRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHH
Confidence 344555555555332 234445555544444433
No 326
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.96 E-value=1.5e+02 Score=21.64 Aligned_cols=84 Identities=10% Similarity=-0.017 Sum_probs=43.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHH--hHHHHHHHHHc
Q 048780 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIET--CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV--TYNIMIHGFCK 303 (325)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~ 303 (325)
...+..|+.+ +++.+.+.|..++... -.+.+...++.|+.+-+..+++ .|..++.. .-.+.+.....
T Consensus 149 ~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~gad~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 149 HWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-----RDSDVTLKNKEGETPLQCASL 219 (237)
T ss_dssp HHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-----TTCCTTCCCTTSCCHHHHSCT
T ss_pred HHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH-----cCCCCCccCCCCCCHHHHHHH
Confidence 3344556654 4444455554443221 1123444456777766555443 33333221 11233455567
Q ss_pred cCChHHHHHHHHHHHHc
Q 048780 304 EGQHQKANGLLLDMEET 320 (325)
Q Consensus 304 ~g~~~~a~~~~~~m~~~ 320 (325)
.|+...+.++.+.+.+.
T Consensus 220 ~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 220 NSQVWSALQMSKALQDS 236 (237)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 78888888888888764
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.85 E-value=1.9e+02 Score=22.90 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCcHHh
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR--LKIAWDIFHMLMQNPGLTPDVVT 293 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~ 293 (325)
...++.-|...|+.++|.+.++++...... ...+...+..+.-+.++ .+.+.+++..+. +.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~-~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLW-KSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH-HHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHH-HCCCCCHHHH
Confidence 457788899999999999999999743222 23344445555544433 456778888877 4444444433
No 328
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=31.66 E-value=60 Score=19.84 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHH
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (325)
.++|...|..|..+.++.|+ .+|...+....
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~ 46 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIV 46 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHc
Confidence 45566666666656665554 35555555444
No 329
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=31.65 E-value=3.2e+02 Score=26.99 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHH
Q 048780 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315 (325)
Q Consensus 236 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (325)
.++..+.|.++.+.--.-|.......+..-..++++..|.+++.++.++ +|+...|..++..+...| |+....+.+
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~---k~~~~~~~~~~~~~~~l~-w~h~~~~~~ 1340 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE---KRTRDHFVELAAINGALG-HEHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 4455666667665422223333333334444689999999999999855 478889988888876665 455666666
Q ss_pred HHHHcCCC
Q 048780 316 DMEETGLE 323 (325)
Q Consensus 316 ~m~~~g~~ 323 (325)
++.-..++
T Consensus 1341 ~~~~~~~p 1348 (1354)
T 3lxu_X 1341 RMMITAFP 1348 (1354)
T ss_dssp HHHHHHSC
T ss_pred hhhhhhCc
Confidence 66544443
No 330
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}
Probab=30.81 E-value=1.1e+02 Score=24.29 Aligned_cols=64 Identities=6% Similarity=-0.030 Sum_probs=21.7
Q ss_pred cCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHH--HccC----cHHHHHHHHHHHHHC-CCCCCcccHHH
Q 048780 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL--SKDG----KMEEANCLLEVMIQR-DVNPNTCTYNT 152 (325)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g----~~~~a~~~~~~m~~~-g~~~~~~~~~~ 152 (325)
..|+...||+++..=. ..|.+.|+.+-.-.|..+ ...+ +++..++.++++... .+..|..+|.+
T Consensus 90 ~EPSG~~FNsi~~Le~------~~g~P~NPmINAGAI~~~sll~~~~~~~r~~~il~~~~~lag~~~i~~d~~v~~S 160 (308)
T 2pby_A 90 MEPTDYPFHSIAKLEE------KPAKPLNPMINAGALVVTSMIQGGSVSERLERLLAFVRRLAGNERISYSDEVARS 160 (308)
T ss_dssp SCC----------------------CCBCTTSHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHTCTTCCBCHHHHHH
T ss_pred CCCCCCCCcchhhhhc------cCCCcCCccccHHHHHHHHhccCCCcHHHHHHHHHHHHHHhCCCCCccCHHHHHH
Confidence 6777777777754311 124444443332222222 2222 233455556665544 45555555543
No 331
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=30.42 E-value=2.8e+02 Score=24.33 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHH
Q 048780 23 MVTFNSLIKGLCTEGRILEAARLFK 47 (325)
Q Consensus 23 ~~~~~~ll~~~~~~g~~~~a~~~~~ 47 (325)
+.-| .++..+.-.|.+++|..+++
T Consensus 243 p~FW-~~v~~LvLRGl~~qA~~~L~ 266 (570)
T 3f3f_C 243 QYFW-KLLNQLVLRGLLSQAIGCIE 266 (570)
T ss_dssp HHHH-HHHHHHHHTTCHHHHHHHHT
T ss_pred ccHH-HHHHHHHHcccHHHHHHHHH
Confidence 3445 68888889999999999987
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.05 E-value=1.4e+02 Score=20.58 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=39.0
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCCh
Q 048780 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 243 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (325)
.+.+.+.|.+++.. -..++..+...+..-.|.++++.+. ..+...+..|.-.-++.+...|-+
T Consensus 15 ~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIR-QKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34566778775543 3455666666666778889998887 334445666666666666666643
No 333
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=29.86 E-value=3.6e+02 Score=25.50 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=23.0
Q ss_pred CCcchHHHHHHHHHhcC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048780 2 GRASGGFVLLGRILMSC--FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV 51 (325)
Q Consensus 2 g~~~~A~~l~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 51 (325)
|+.++++.+++.....+ -.+....-..+.-+....|..+++...+.....
T Consensus 388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 55566655555544311 011222333333444555555566665555443
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.82 E-value=1.3e+02 Score=20.43 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCCh
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (325)
+.+.+.|.+++..= ..++..+...+..-.|.++++.+. ..+...+..|.-.-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALE-GKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHCCCE
Confidence 45667888766543 345555566666778999999987 444455666766667777776643
No 335
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=29.28 E-value=95 Score=19.16 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHcCCCC
Q 048780 309 KANGLLLDMEETGLEP 324 (325)
Q Consensus 309 ~a~~~~~~m~~~g~~p 324 (325)
+..++.+.|.+.|+.|
T Consensus 60 Kl~~~~e~l~~~GI~~ 75 (86)
T 3nr7_A 60 KLQQYREMLIADGIDP 75 (86)
T ss_dssp HHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHcCCCH
Confidence 3344444444444444
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.36 E-value=1.4e+02 Score=20.40 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=40.4
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 243 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
-+.+++.|.+++..= ..++..+...+ .-.|.++++.+. ..+...+..|.-.-++.+...|-
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVR-KTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHH-hhCCCCCHhHHHHHHHHHHHCCc
Confidence 345667888877643 34455555556 668999999987 55555677776666677766664
No 337
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.00 E-value=92 Score=18.02 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 269 (325)
++-++..++...-+++++..+.+..+.| ..+..+|---++..++..
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 4556677777777788888888887777 446667766666665543
No 338
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.98 E-value=1.6e+02 Score=20.74 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHhh
Q 048780 230 LYKNGFVLEAMKVFSAIGNHKCVL--TIETCNCLID-G-----LCKIGRLKIAWDIFHMLMQ 283 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~-----~~~~g~~~~a~~~~~~~~~ 283 (325)
+...|++-+|-++|+..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344599999999999986654445 5667777777 2 3357999999999987753
No 339
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=27.24 E-value=65 Score=19.00 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHc
Q 048780 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303 (325)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (325)
.++|...|..|..+.++.|+ .+|...+..+..
T Consensus 14 ~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~ 45 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN-ASWEQAMKMIIN 45 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHcc
Confidence 45666666666666666554 356666655543
No 340
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.70 E-value=1.1e+02 Score=22.83 Aligned_cols=30 Identities=20% Similarity=0.027 Sum_probs=22.8
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 048780 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146 (325)
Q Consensus 117 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 146 (325)
+.+...++.|+.+.+..+++.+.+.|..++
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 345667778999988888888888877654
No 341
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=26.67 E-value=1.5e+02 Score=20.04 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=6.6
Q ss_pred HHhcCCHHHHHHHH
Q 048780 178 YCKDRNVEDAVSLC 191 (325)
Q Consensus 178 ~~~~g~~~~a~~~~ 191 (325)
.++.|+.+.+..++
T Consensus 15 A~~~g~~~~v~~ll 28 (165)
T 3twr_A 15 AAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHhCCHHHHHHHH
Confidence 34445555444443
No 342
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.12 E-value=4.1e+02 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHc
Q 048780 171 YNILINGYCKDRN---VEDAVSLCREMLSE 197 (325)
Q Consensus 171 ~~~li~~~~~~g~---~~~a~~~~~~m~~~ 197 (325)
-..++...|..|+ .+.|.+.|+.....
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~ 718 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSD 718 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhC
Confidence 3446677777776 55788888877654
No 343
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=26.00 E-value=1.3e+02 Score=20.62 Aligned_cols=81 Identities=7% Similarity=-0.013 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhh-CCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHH--HHHcc-CChH
Q 048780 236 VLEAMKVFSAIGN-HKCVL---TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH--GFCKE-GQHQ 308 (325)
Q Consensus 236 ~~~a~~~~~~m~~-~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~--~~~~~-g~~~ 308 (325)
++.|+++.+...+ .|..| ++.++...++...+.|-++.. +.|..|...++. .+.+|+.... .|... ....
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN~--tvH~Y~e~~a~~v~~~I~~~l~ 130 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRNI--TSHTYDQEKAMAVYAQIDDFLI 130 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHTT--GGGTTSHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhhH--hcccccHhhHHHHHHHHHHHHH
Confidence 4455555544433 34443 356677777777777776655 455556544433 4555544332 22221 1344
Q ss_pred HHHHHHHHHHH
Q 048780 309 KANGLLLDMEE 319 (325)
Q Consensus 309 ~a~~~~~~m~~ 319 (325)
...++.+.+.+
T Consensus 131 ~f~~l~~~l~~ 141 (146)
T 1jog_A 131 ESSFLLEQLRQ 141 (146)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 45555555543
No 344
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.74 E-value=2.8e+02 Score=22.76 Aligned_cols=259 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCchhhHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH----HHHHHHHHHHHHhcCC
Q 048780 8 FVLLGRILMSCFTPNMVTFN--SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----LVALNLFEEMVNEFGV 81 (325)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~----~~a~~~~~~~~~~~~~ 81 (325)
.++++.+.+.|..++..... +.+...++.|+.+-+..+++.-.... ..+..-.+.+. ..-.++.+.+.+.+..
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 105 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC
Q ss_pred ccCccHHHHHHHHHHHHhcCc-----hhhcCCCCChhhHH--HHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 048780 82 ICKPDVVTCTNIIDGLCKDGF-----MMDQGMRPDVVTLN--VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154 (325)
Q Consensus 82 ~~~~~~~~~~~ll~~~~~~~~-----~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 154 (325)
.-..+..-.+.|..+...... +.+.+..++..... +.+...+..|+.+ +++.+.+.|..++.
T Consensus 106 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~------- 174 (437)
T 1n11_A 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR----VAELLLERDAHPNA------- 174 (437)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTC-------
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCC-------
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcC
Q 048780 155 DGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234 (325)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~ 234 (325)
....-.+.+...+..|+.+ +++.+.+.|..+ ..++..-++.|..+.....
T Consensus 175 ------------~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~--------------~~~~~~g~t~L~~A~~~~~ 224 (437)
T 1n11_A 175 ------------AGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSP--------------HSPAWNGYTPLHIAAKQNQ 224 (437)
T ss_dssp ------------CCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCS--------------CCCCTTCCCHHHHHHHTTC
T ss_pred ------------CCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCC--------------CCcCCCCCCHHHHHHHcCC
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHH
Q 048780 235 FVLEAMKVFSAIGNHKCVLTIETCN--CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (325)
.++++.+.+.|..++..... +.+...+..|+.+-+..+++. ...+......-.+.+...++.|..+-+.-
T Consensus 225 -----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 296 (437)
T 1n11_A 225 -----VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLHLVAQEGHVPVADV 296 (437)
T ss_dssp -----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred -----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q ss_pred HHHH
Q 048780 313 LLLD 316 (325)
Q Consensus 313 ~~~~ 316 (325)
+++.
T Consensus 297 Ll~~ 300 (437)
T 1n11_A 297 LIKH 300 (437)
T ss_dssp HHHH
T ss_pred HHhC
No 345
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.61 E-value=1.4e+02 Score=21.79 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=8.4
Q ss_pred HHHcCCHHHHHHHHHHHhh
Q 048780 230 LYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 230 ~~~~~~~~~a~~~~~~m~~ 248 (325)
.+..|+.+.+..+++.+.+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 3344455444444444333
No 346
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.11 E-value=68 Score=18.08 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCCc
Q 048780 36 EGRILEAARLFKKLNVFC-CDPNV 58 (325)
Q Consensus 36 ~g~~~~a~~~~~~m~~~g-~~~~~ 58 (325)
.-+++.|...|.++...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 458999999999998765 44443
No 347
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=24.90 E-value=3.5e+02 Score=23.69 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHH
Q 048780 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311 (325)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (325)
+..--.-++..|++.|-.+.|.+++..+- ..-+ -+...+ ..+..|+|+|+++++.
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g-~k~l-~~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLG-NQML-SAHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHH-C---------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHH-HHHH-HCccHH-HHHHHHHHcCChhhcc
Confidence 45556788999999999999999999886 3322 233455 5566788888887653
No 348
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.88 E-value=2.2e+02 Score=21.42 Aligned_cols=92 Identities=15% Similarity=0.058 Sum_probs=49.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 048780 174 LINGYCKDRNVEDAVSLCREMLSE--GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251 (325)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 251 (325)
-++.+....++++|.+++++..+. +.++... .........+..-.....-.-+..+.+++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~-------------~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--- 87 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERIS-------------DEELMLLNLISLKIEQRREAISSKLSQSILS--- 87 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCccccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 477888999999999999988753 2221000 0001111122222232233334444444432
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048780 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHML 281 (325)
Q Consensus 252 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 281 (325)
.++...-...+..+.+.|+-++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 334555556667777778877777777543
No 349
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.40 E-value=1.4e+02 Score=20.03 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC
Q 048780 245 AIGNHKCVLTIETCNCLIDGLCKIG-RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306 (325)
Q Consensus 245 ~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (325)
.+++.|.+++..= ..++..+...+ ..-.|.++++.+. ..+...+..|.-.-++.+...|-
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALM-EAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHCCc
Confidence 4566787766543 34555566555 6677889998887 34445566666666666666554
No 350
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=24.18 E-value=20 Score=23.87 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHH
Q 048780 235 FVLEAMKVFSAIGNHKCV-LTIETCNCLIDGLC 266 (325)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~ 266 (325)
.+++|.+.+..|++.-+. -.+..||..+..+-
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk 74 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 466666666666543222 14556666665543
No 351
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.06 E-value=2.2e+02 Score=20.93 Aligned_cols=72 Identities=7% Similarity=-0.053 Sum_probs=42.1
Q ss_pred HHHHHHH---ccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 048780 117 VMTDNLS---KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188 (325)
Q Consensus 117 ~ll~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (325)
-+|+++. |..+.+.|+-++-+|.+.|-.|.-..-..++-+.-.....-+.-...-.+..+++-+.|.++.-+
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 83 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGER 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHH
Confidence 3445554 56899999999999999998775443333333332222222222344455566666666655443
No 352
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.64 E-value=92 Score=20.75 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 277 (325)
|--.|...+..++.+-|+++++...+.| +...|.+.+-.|-..=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4445666777888888888888888877 667787888777777777777765
No 353
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.42 E-value=1.1e+02 Score=17.24 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=19.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC
Q 048780 34 CTEGRILEAARLFKKLNVFCCDPN 57 (325)
Q Consensus 34 ~~~g~~~~a~~~~~~m~~~g~~~~ 57 (325)
...|+++.|...+-+|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 457899999999999987766665
No 354
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.81 E-value=3.1e+02 Score=22.32 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHh
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR--LKIAWDIFHMLM 282 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~ 282 (325)
...++.-|...|+.++|.+.++++..... ........++......++ -+.+..++..+.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~-~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~ 75 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKH-FLPEMLSKVIILSLDRSDEDKEKASSLISLLK 75 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGG-GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchh-hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 45678999999999999999999864210 112233333443344443 244666666666
No 355
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.95 E-value=3.4e+02 Score=22.08 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCC--hHHHHHHHHHHHHcCC
Q 048780 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ--HQKANGLLLDMEETGL 322 (325)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 322 (325)
....++.-|...|+.++|.+.++++. ...+. .......+..+.-+.++ .+.+.+++..+...|+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~-~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-CTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHcc-CCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 35788888999999999999999886 22222 23345555566665433 4567788888877765
No 356
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=20.79 E-value=1.2e+02 Score=18.95 Aligned_cols=39 Identities=18% Similarity=0.038 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 048780 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL 45 (325)
Q Consensus 6 ~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 45 (325)
.|.++|..+.+.+ ..+..-..-|-..+.+-|+.+-+..+
T Consensus 41 s~~dlf~~Le~~~-~l~~~nl~~L~elL~~I~R~DLl~~v 79 (91)
T 1a1w_A 41 SGLDLFSMLLEQN-DLEPGHTELLRELLASLRRHDLLRRV 79 (91)
T ss_dssp SSHHHHHHHHHTT-SCBTTBCHHHHHHHHHHTCSHHHHHH
T ss_pred CHHHHHHHHHHcC-CCCcchHHHHHHHHHHCCHHHHHHHH
Confidence 3455555555544 23333333333333444444444333
No 357
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=20.76 E-value=86 Score=15.12 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHccCChHHHHHHHHHHH
Q 048780 297 MIHGFCKEGQHQKANGLLLDME 318 (325)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~ 318 (325)
.+.-|...|+.++|..+-++|+
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 3555666677777766666554
No 358
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.74 E-value=1.6e+02 Score=20.24 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=39.6
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCCh
Q 048780 244 SAIGNHKCVLTIETCNCLIDGLCKIG-RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 244 ~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (325)
+.+.+.|.+++..= ..++..+...+ ..-.|.++++.+. ..+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLI-DLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44667787766543 34455555555 5667899999887 444455666666666777766643
No 359
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.65 E-value=2.2e+02 Score=19.89 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=45.2
Q ss_pred HHHHHHH-HHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCcHHhHHHHHHHHHccCCh
Q 048780 237 LEAMKVF-SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-GLTPDVVTYNIMIHGFCKEGQH 307 (325)
Q Consensus 237 ~~a~~~~-~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~ 307 (325)
+.+++-+ +.+++.|.+++.. -..++..+...+..-.|.++++.+.+.. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4444444 4456678887654 4556777777777778999999887321 4445666666666777776643
No 360
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=20.55 E-value=98 Score=19.35 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCCCC
Q 048780 309 KANGLLLDMEETGLEPN 325 (325)
Q Consensus 309 ~a~~~~~~m~~~g~~pd 325 (325)
...+..++++..|+.||
T Consensus 21 ~ieekinELk~dG~ePD 37 (103)
T 2pk8_A 21 EIEEKMNELKMDGFNPD 37 (103)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 44566677788888887
No 361
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=20.42 E-value=2.2e+02 Score=19.67 Aligned_cols=109 Identities=6% Similarity=-0.010 Sum_probs=52.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhhcCCCCCchh-hHHHHHHHHHhcC--CHHHHHHHH
Q 048780 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY-SYNILINGYCKDR--NVEDAVSLC 191 (325)
Q Consensus 115 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~~li~~~~~~g--~~~~a~~~~ 191 (325)
+..+.......|-+++.+.-+.+|.. .-+...+..++..|.. +.. .+..+-.+ ...+ +++.+....
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L~~---~~~~~~~~ell~~Fl~-------d~~~~l~~L~~a-l~~~~~D~~~l~~~a 78 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQLQD---ENNPEFVFEVVSLFFD-------DSERILKDLSFA-VDQQSIDFKKVDAHV 78 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTCB---TTBTTHHHHHHHHHHH-------HHHHHHHHHHHH-HTSSSCCHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHhhc---CCCHHHHHHHHHHHHH-------HHHHHHHHHHHH-HHcCCccHHHHHHHH
Confidence 34455556666666644333333322 2233344444444432 222 23333333 3445 777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 048780 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248 (325)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 248 (325)
+.++...-... -........-+..+++.|+.+.+...+..+..
T Consensus 79 H~LKGss~~lG--------------a~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 79 HQFKGSSASIG--------------AQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHHHHHHHHHT--------------CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77775310000 00112223335666777777777777666653
No 362
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.24 E-value=2.3e+02 Score=19.89 Aligned_cols=67 Identities=7% Similarity=0.003 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCcHHh
Q 048780 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR--LKIAWDIFHMLMQNPGLTPDVVT 293 (325)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~ 293 (325)
...++.-|...++.++|...++++...... ......++......++ -+.+..++..+. . ++-+....
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~--~~~V~~~I~~aldrk~~ere~~s~LL~~L~-~-~~ls~~~i 81 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDLC-G-TVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGGG--GHHHHHHHHHHHTSCHHHHHHHHHHHHHHB-T-TTBCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-H-CCCCHHHH
Confidence 456788899999999999999998744322 2233334443344443 334667777765 3 44333333
Done!