Your job contains 1 sequence.
>048783
PEEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIEN
VAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQ
RGGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFAL
KSSAEHAVIKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF
DLLDDDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFEVPVEDPFFCMHY
KEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAY
EKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDE
GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQ
LRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHE
LPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD
GIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS
KLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCF
IQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC
DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHV
NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYP
DFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFT
ADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEF
RQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFA
WIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048783
(1117 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2114633 - symbol:RDR6 "AT3G49500" species:3702... 1539 0. 3
UNIPROTKB|Q8LHH9 - symbol:SHL2 "Probable RNA-dependent RN... 1253 7.7e-315 3
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 960 5.0e-104 3
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 557 6.4e-97 5
UNIPROTKB|G4NJ50 - symbol:MGG_02748 "RNA-dependent RNA po... 459 1.3e-75 2
POMBASE|SPAC6F12.09 - symbol:rdp1 "RNA-directed RNA polym... 397 1.8e-66 3
WB|WBGene00004510 - symbol:rrf-3 species:6239 "Caenorhabd... 307 1.0e-48 2
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 546 8.0e-46 3
WB|WBGene00004508 - symbol:rrf-1 species:6239 "Caenorhabd... 302 2.5e-43 3
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 468 8.5e-38 3
ASPGD|ASPL0000040001 - symbol:rrpC species:162425 "Emeric... 306 1.3e-37 2
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 330 3.6e-33 4
WB|WBGene00001214 - symbol:ego-1 species:6239 "Caenorhabd... 295 4.1e-33 2
WB|WBGene00004509 - symbol:rrf-2 species:6239 "Caenorhabd... 291 8.5e-33 3
ASPGD|ASPL0000071805 - symbol:rrpB species:162425 "Emeric... 229 2.2e-31 2
TAIR|locus:2042808 - symbol:AT2G05370 "AT2G05370" species... 286 7.7e-24 1
TAIR|locus:2052020 - symbol:AT2G19930 species:3702 "Arabi... 153 4.4e-13 3
TAIR|locus:2052040 - symbol:AT2G19910 species:3702 "Arabi... 143 1.7e-10 4
TAIR|locus:2052030 - symbol:AT2G19920 species:3702 "Arabi... 132 2.2e-09 4
>TAIR|locus:2114633 [details] [associations]
symbol:RDR6 "AT3G49500" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0016441
"posttranscriptional gene silencing" evidence=TAS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=TAS]
[GO:0048366 "leaf development" evidence=IGI] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IMP] [GO:0009616 "virus induced gene silencing"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048467
"gynoecium development" evidence=IMP] [GO:0048544 "recognition of
pollen" evidence=IMP] InterPro:IPR007855 Pfam:PF05183 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC012329 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
GO:GO:0048544 GO:GO:0003887 GO:GO:0009616 EMBL:AL132964
GO:GO:0003968 eggNOG:NOG307726 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 EMBL:AF239718
EMBL:AF268093 IPI:IPI00524423 RefSeq:NP_190519.1 UniGene:At.65263
ProteinModelPortal:Q9SG02 SMR:Q9SG02 MINT:MINT-7014695
STRING:Q9SG02 PaxDb:Q9SG02 PRIDE:Q9SG02 EnsemblPlants:AT3G49500.1
GeneID:824112 KEGG:ath:AT3G49500 TAIR:At3g49500 InParanoid:Q9SG02
OMA:SCAEQGN PhylomeDB:Q9SG02 Genevestigator:Q9SG02 Uniprot:Q9SG02
Length = 1196
Score = 1539 (546.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 317/504 (62%), Positives = 380/504 (75%)
Query: 268 QRVQEDCLSQPVTIRXXXXXXXXXXXXXXCMHYKEGVSFEIMFLVNAVMHKGILNQHQLS 327
+RVQE+ + P IR C+H+KEG+SFEIMFLVN+V+H+G+ NQ QL+
Sbjct: 290 RRVQEERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLT 349
Query: 328 DSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIA 387
+ FFDLLR QP++V + +LKH+ +YKRPVFDAY++LK VQE + KNPKL + +DI+
Sbjct: 350 ERFFDLLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDIS 409
Query: 388 EVRRLVITPTKAYWF-----LES------KDVADRFLRVTFMDEGLQTMNANVLSYYVAP 436
E+RRLVITPT+AY L + K VA+RFLRVTFMDE +QT+N+NVLSY+VAP
Sbjct: 410 EIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAP 469
Query: 437 IVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS 496
IVKD+TS+SFSQKT VFKRVKSIL+DGF LCGR+YSFLAFS+NQLRD SAWFF++ G+T
Sbjct: 470 IVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTR 529
Query: 497 VLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
V DIK WMG+F KN+AK AARMGLCFSST+ATV++ P EVD E+PDI+RNGYVFSDGIG
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIG 589
Query: 557 KITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC 616
ITPDLA EV + LKLD P AYQIRYAG+KGVVA WP+K DGIR++LR SMKKF S
Sbjct: 590 TITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSK 649
Query: 617 HTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
HT LEICSWTRFQPGFLNRQIITLLS L V DEIFW +Q SM KLN +L +DVAFEVL
Sbjct: 650 HTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL 709
Query: 677 TASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY----ELGELKECQCFIQVSESSLENCF 732
TASCAEQGNTAAIMLSAGFKP+TEPHL+GML+ +L L+E S L C
Sbjct: 710 TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCL 769
Query: 733 SK-----HGSRFAETKKLQVINGF 751
+ HG F + K + N F
Sbjct: 770 DEAGILEHGQCFIQVSKPSIENCF 793
Score = 1413 (502.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 278/433 (64%), Positives = 328/433 (75%)
Query: 703 LQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLR 761
L G L E G L+ QCFIQVS+ S+ENCFSKHGSRF ETK L+V+ G+V IAKNPCL
Sbjct: 765 LMGCLD-EAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLH 823
Query: 762 PGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK 821
PGDVRILEAVD P+LHH+ DCL+FPQKGDRPHTNEASGSDLDGDLY+V WD+ LIPP++K
Sbjct: 824 PGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRK 883
Query: 822 SCPPMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENC 868
S P M AE K L VNHQ+ LG ICNAHVVHADRSEYGA DE C
Sbjct: 884 SYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEEC 943
Query: 869 ILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAY 928
+LLA+LAATAVD PKTGKIV+MP HLKPK YPDFM E+YQTYKSNKILGRLYR++K Y
Sbjct: 944 LLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVY 1003
Query: 929 DENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE- 987
DE+ SSE +P I YD LE+PG D +A KC YDGQL GLLGQY V ++E
Sbjct: 1004 DEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEE 1063
Query: 988 --FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQ 1044
HIWSMPKY S+KQGEL+ERLKHSY++ +KEFR+VFE+ D E LS+ EKN+LYE+
Sbjct: 1064 IVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEK 1123
Query: 1045 KASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSK 1104
KASAWY VTYH EWVKKSL+L + + +LSFAWIA DYLARIKI+ +EM +I +K
Sbjct: 1124 KASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAK 1183
Query: 1105 PVNNLARYVADRI 1117
PV++LA+++A R+
Sbjct: 1184 PVDSLAKFLAQRL 1196
Score = 758 (271.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 152/266 (57%), Positives = 183/266 (68%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E K SV TQVS+GGF A L YLE+EVG VWRCRLKTS TP SYPNF I +
Sbjct: 4 EGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADT 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
+ + D+Y+KVEPHAFVHFA RAMDAA L L+G+ LKVSLGP+NP+ LNQR
Sbjct: 64 SNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P KL + +EIG+LV++D+FFVSWR A G DFLVDPFD TCKFCF K TAF+ K
Sbjct: 124 RRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAFSFK 181
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ HAVI C++K+ LVR+I V+QY L ++L LASSPR+ YRTA DDI VP
Sbjct: 182 DAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPG 241
Query: 241 XXXXXXXPWIRTTDFSPSGAIGQCNS 266
PWIRTTDF+ GAIG+C+S
Sbjct: 242 DLLDDDDPWIRTTDFTQVGAIGRCHS 267
Score = 41 (19.5 bits), Expect = 1.7e-72, Sum P(2) = 1.7e-72
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 886 KIVTMPSHLKPKKYPD--FMEIEEYQTYKSNKIL 917
+I+T+ S L PD F +++E YK N+IL
Sbjct: 669 QIITLLSVLG---VPDEIFWDMQESMLYKLNRIL 699
>UNIPROTKB|Q8LHH9 [details] [associations]
symbol:SHL2 "Probable RNA-dependent RNA polymerase SHL2"
species:39947 "Oryza sativa Japonica Group" [GO:0010492
"maintenance of shoot apical meristem identity" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] InterPro:IPR007855
Pfam:PF05183 GO:GO:0005634 GO:GO:0016246 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
EMBL:AP008207 GO:GO:0048544 GO:GO:0009616 GO:GO:0003968
eggNOG:NOG307726 HOGENOM:HOG000239464 PANTHER:PTHR23079 OMA:SCAEQGN
EMBL:AB353923 EMBL:AP004357 RefSeq:NP_001043229.1 UniGene:Os.30747
EnsemblPlants:LOC_Os01g34350.1 GeneID:4323938 Gramene:Q8LHH9
ProtClustDB:CLSN2691477 BRENDA:2.7.7.48 Uniprot:Q8LHH9
Length = 1218
Score = 1253 (446.1 bits), Expect = 7.7e-315, Sum P(3) = 7.7e-315
Identities = 251/422 (59%), Positives = 315/422 (74%)
Query: 297 CMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPV 356
C+ + EG+ F ++F+VNA++HKGI+NQHQL+ FF LL V V AL+ + K PV
Sbjct: 345 CLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPV 404
Query: 357 FDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF---LESK------- 406
FDA +LK + +NPKL K DD AEVRRLVITPT+AY +E
Sbjct: 405 FDACGRLKKALNRVARNPKLLCS-KVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHY 463
Query: 407 -DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
+VADRFLRVTFMDEG+Q +N NVL+ + APIVKD+ SN F QKT V+KRV+ +L++GF+
Sbjct: 464 HEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFH 523
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSS 525
+CGR+YSFLAFSSNQLRD SAWFF++ +T+V I+ WMG FT+KN+AK+AARMG CFSS
Sbjct: 524 MCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSS 583
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRY 585
T+ATV + P EVD D+ N Y+FSDGIGKITPDLA+EVA+ L+L +PP SAYQIR+
Sbjct: 584 TYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPP-SAYQIRF 642
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLN 645
AG+KGV+A W DG R+ LR SM+KF+S H LE+ SWT+FQPGFLNRQII LLS+LN
Sbjct: 643 AGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLN 702
Query: 646 VSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQG 705
V D IFW +Q +M S LN +L DVAFEVLT SCA+ GNTAA+MLSAGF+P+TEPHL+
Sbjct: 703 VPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDGNTAALMLSAGFEPRTEPHLKA 762
Query: 706 ML 707
ML
Sbjct: 763 ML 764
Score = 1231 (438.4 bits), Expect = 7.7e-315, Sum P(3) = 7.7e-315
Identities = 258/433 (59%), Positives = 306/433 (70%)
Query: 703 LQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAET-KKLQVINGFVVIAKNPCLR 761
L G L ELG L++ QCFI+ + SL + F KHGSRF+ T K +VI G VVIAKNPCL
Sbjct: 789 LMGCLD-ELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLH 847
Query: 762 PGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK 821
PGDVRILEAVD PELHHL DCLVFPQKG+RPH NEASGSDLDGDLY+VTWDE LIPP KK
Sbjct: 848 PGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKK 907
Query: 822 SCPPMECTPAEAKPLTCHVN-H------------QNLGQICNAHVVHADRSEYGAFDENC 868
S PM+ +P EAK L V+ H +NLG+ICNAHVVHAD SEYGA DE C
Sbjct: 908 SWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKC 967
Query: 869 ILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAY 928
I LA+LAATAVD PKTGK+ MP HLKPK YPDFM E+ Q+YKS KILGRLYR I+ A
Sbjct: 968 IHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEAS 1027
Query: 929 DENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-E 987
+ ++ VS EV P D+ YD DLEVPG+ DF A A KCSYD QL+ LL QY V + E
Sbjct: 1028 NGDV-VSQEV-CTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAE 1085
Query: 988 F--RHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD-FELSDNEKNVLYEQ 1044
HI + K +S+KQG++++RLK +YSA RKEF+ FE + SD E+ D+EKN+LYE
Sbjct: 1086 LVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEM 1145
Query: 1045 KASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSK 1104
KASAWYQVTYH +WV+KS +L LSFAWI DYLARIK++C + K
Sbjct: 1146 KASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQK 1205
Query: 1105 PVNNLARYVADRI 1117
PV LA Y+++RI
Sbjct: 1206 PVERLAAYISERI 1218
Score = 578 (208.5 bits), Expect = 7.7e-315, Sum P(3) = 7.7e-315
Identities = 120/261 (45%), Positives = 162/261 (62%)
Query: 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIE----NVAEV 64
V TQVS+GGFD + A DL +LE+EVG VWRCR+KTS TP +SYP+F + + +
Sbjct: 28 VTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASAA 87
Query: 65 QKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGT 124
Y++V PHAFVHFA RA D A L L G+ L+V+ P++ R+++R
Sbjct: 88 AAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSSI 147
Query: 125 SAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSA 184
AP + PDV +E+G+L + F +WRGP +G D VDPFDG C+ FT+DTAF
Sbjct: 148 -APFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFR 206
Query: 185 EHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFXXX 243
E A I+C+ K+ F VR++ V+ Y L ++LL LA++P + YRTA DD VPF
Sbjct: 207 EVAAIRCDVKLEFPVRDVLEVRLY-RLD-CSLLLRLAAAPLVHYRTADDDFHEPVPFDLL 264
Query: 244 XXXXPWIRTTDFSPSGAIGQC 264
PWIRTTD +PSGAIG+C
Sbjct: 265 DDDDPWIRTTDITPSGAIGRC 285
Score = 45 (20.9 bits), Expect = 2.9e-187, Sum P(3) = 2.9e-187
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 487 WFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEI 532
W + E VL+ T ++ Y + G FSST E+
Sbjct: 788 WLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEV 833
Score = 40 (19.1 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 597 AKDDGIRMSLRGSMKKFKSCHTSLEI 622
A D +R+S R S+ F+ LE+
Sbjct: 134 APDSSLRVSRRSSIAPFRFPDVRLEV 159
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 960 (343.0 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
Identities = 245/638 (38%), Positives = 353/638 (55%)
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEV----DHELPDIKRNGYVFSDGIGKITPDLAME 565
+N+AKYAAR+G FSS+ T+ + E+ D E+ + YVFSDGIGKI+ + A +
Sbjct: 490 RNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR-YVFSDGIGKISAEFARK 548
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW 625
VA+ L P SA+QIRY GYKGVVA P + ++SLR SM KF+S +T L++ +W
Sbjct: 549 VARKCGLTEFSP-SAFQIRYGGYKGVVAVDP--NSSKKLSLRKSMSKFESENTKLDVLAW 605
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC-AEQG 684
+++QP ++NRQ+ITLLSTL V+D +F Q + +L+ +L A E L E
Sbjct: 606 SKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENT 665
Query: 685 NTAAIMLSAGFKPQTEPHLQGML-TYELGELKECQCFIQVSES---SLENCFSK-----H 735
N ++ G+KP EP L ML + +L E + ++ S S+ C + +
Sbjct: 666 NILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEY 725
Query: 736 GS---RFAETKKLQ---VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKG 789
G ++++ + +I G VV+AKNPCL PGDVR+L+AV+ P L+H+ DC+VFPQKG
Sbjct: 726 GQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKG 785
Query: 790 DRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-------- 841
RPH NE SGSDLDGD+Y+V WD+ L+PP ++ PM+ TP + L V
Sbjct: 786 LRPHPNECSGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPEPTQILDHDVTIEEVEEYF 843
Query: 842 -----HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKP 896
+ +LG I NAH AD+ AF + CI LAK +TAVD PKTG +P HL
Sbjct: 844 ANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYV 903
Query: 897 KKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGS 956
K+YPDFME + TY+S ++G+L+R++K IS+ S ++ YD D+EV G
Sbjct: 904 KEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVASKSYDKDMEVDGF 962
Query: 957 VDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRH--IWSMPKYNSRKQGELQERLKHSY 1013
++ +A QK +YD +L L+ Y + + E I M K ++++ E + +
Sbjct: 963 EEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDA--ESIGRAV 1020
Query: 1014 SAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARS 1073
A RKE +F N+ S+ E+N KASAWY VTYH + L +G R
Sbjct: 1021 RALRKETLSLF---NA----SEEEENE--SAKASAWYHVTYHSSY----WGLYNEGLNRD 1067
Query: 1074 VVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
LSFAW D L RIK N+G+ + L R
Sbjct: 1068 H-FLSFAWCVYDKLVRIK-----KTNLGRRQRQETLER 1099
Score = 592 (213.5 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 163/483 (33%), Positives = 263/483 (54%)
Query: 306 FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQP--REVIVTALKHIYSYKRPVFDAYEKL 363
FEI+F +N ++ L+ L F+ LL + R +I L+ ++ ++ L
Sbjct: 280 FEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWL 339
Query: 364 KDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR---------- 411
+D + I KL P ++DD + + R+ +TP + Y+ +V++R
Sbjct: 340 RDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYIN 399
Query: 412 -FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
FLRV+F+DE L+ + + LS P +S ++T ++ R+ S+L DG + ++
Sbjct: 400 NFLRVSFVDEDLEKVRSMDLS----P------RSSTQRRTKLYDRIYSVLRDGIVIGDKK 449
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT 529
+ FLAFSS+QLR++SAW F+ + + I+ WMG+F +N+AKYAAR+G FSS+ T
Sbjct: 450 FEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRET 509
Query: 530 VEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRY 585
+ + E++ +PD++ YVFSDGIGKI+ + A +VA+ L P SA+QIRY
Sbjct: 510 LNVRSDEIE-VIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSP-SAFQIRY 567
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLN 645
GYKGVVA P + ++SLR SM KF+S +T L++ +W+++QP ++NRQ+ITLLSTL
Sbjct: 568 GGYKGVVAVDP--NSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLG 625
Query: 646 VSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC-AEQGNTAAIMLSAGFKPQTEPHLQ 704
V+D +F Q + +L+ +L A E L E N ++ G+KP EP L
Sbjct: 626 VTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLS 685
Query: 705 GML-TYELGELKECQCFIQVSES---SLENCFSKHGSRFAETKKLQVINGFVVIAKNPCL 760
ML + +L E + ++ S S+ C ET+ L+ G VV+ + +
Sbjct: 686 MMLQNFRASKLLELRTKTRIFISGGRSMMGCLD-------ETRTLEY--GQVVVQYSDPM 736
Query: 761 RPG 763
RPG
Sbjct: 737 RPG 739
Score = 64 (27.6 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 215 ILLWLASSPRICYRTAKDDIEVL---VPFXXXXXXXPWIRTTDFSPSGAIGQ 263
+++ + +P+I + I +L + F WIRTTDF+ S IGQ
Sbjct: 169 LVIQVIGAPKI-FEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQ 219
Score = 40 (19.1 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 13 VSVGGFDRDIKAVDLVKYLENEVG 36
+ V GF + A ++ K+LE G
Sbjct: 5 IQVFGFPNGVSAEEVKKFLERLTG 28
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 557 (201.1 bits), Expect = 6.4e-97, Sum P(5) = 6.4e-97
Identities = 164/464 (35%), Positives = 241/464 (51%)
Query: 306 FEIMFLVNAVMHKGILNQHQLSD-SFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLK 364
+EI+F +NA++H ++ SD +LR E + LK ++ +D +K
Sbjct: 293 YEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVK 352
Query: 365 DVQECLIKNPKLNEGP--KNIDD--IAEVRRLVITPTKAYWF---LES-----KDVADR- 411
+ ++K K + K + + I +R +TP+K Y LE+ K+ A+
Sbjct: 353 TQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHV 412
Query: 412 --FLRVTFMDEGLQTMNANVLS------YYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
F+RVTF++E + AN LS Y+V P +T ++ RV SIL +G
Sbjct: 413 SDFMRVTFVEEDWSKLPANALSVNSKEGYFVKP-----------SRTNIYNRVLSILGEG 461
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLC 522
+ +R+ FLAFS++QLR +S W F+ + DI+ WMG F ++I+K AARMG
Sbjct: 462 ITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQL 521
Query: 523 FSSTHATVEIPPTEVDHELPDIK--RNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
FS++ T+ + +V+ ++PDI+ +G Y FSDGIGKI+ A +VAQ K S P
Sbjct: 522 FSASRQTLIVRAQDVE-QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQ--KCGLSHVP 578
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
SA+QIRY GYKGV+A + ++SLR SM KF S + L + WT P FLNR+II
Sbjct: 579 SAFQIRYGGYKGVIAV--DRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREII 636
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI-MLSAGFKP 697
LLSTL + D +F +QA S L ML D A VL E + ML G+ P
Sbjct: 637 CLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAP 696
Query: 698 QTEPHLQGMLTY----ELGELKECQCFIQVSESS-LENCFSKHG 736
+EP+L ML +L ELK +C I V + L C + G
Sbjct: 697 SSEPYLSMMLRVHHESQLSELKS-RCRILVPKGRILIGCMDEMG 739
Score = 493 (178.6 bits), Expect = 6.4e-97, Sum P(5) = 6.4e-97
Identities = 130/373 (34%), Positives = 192/373 (51%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAET-KKLQVINGFVVIAKNPCLRPGDVRIL 768
E+G L+ Q +++V+ + E S+ S F + ++ V+ G VV+ KNPCL PGD+R+L
Sbjct: 737 EMGILEYGQVYVRVTLTKAE-LKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVL 795
Query: 769 EAVDRPELHH--LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
+A+ DC++FPQKG+RPH NE SG DLDGD ++V+WDE +IP PPM
Sbjct: 796 DAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMD--PPM 853
Query: 827 ECTPAEAK----PLTCHVNHQ---------NLGQICNAHVVHADRSEYGAFDENCILLAK 873
+ + + +T H+ LG I AH+VHADR A + C+ LA
Sbjct: 854 DYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELAN 913
Query: 874 LAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENIS 933
L + AVD KTG MP LKP+++PDF+E E TY S + G+LYR +K + +
Sbjct: 914 LHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKSSLAQRKP 973
Query: 934 VSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV-NRKEFRH-- 990
+ D + YD LE G F A+ + Y +L L+ Y N +E
Sbjct: 974 EAESEDT----VAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTGI 1029
Query: 991 IWSMPKY---NSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKAS 1047
+ + Y ++R+ G++++R+ S KE FEK D + +K L AS
Sbjct: 1030 LKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCED----EQQKKKL----AS 1081
Query: 1048 AWYQVTY---HRE 1057
AWY VTY HR+
Sbjct: 1082 AWYYVTYNPNHRD 1094
Score = 57 (25.1 bits), Expect = 6.4e-97, Sum P(5) = 6.4e-97
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 249 WIRTTDFSPSGAIG 262
WIRTTDFS S +IG
Sbjct: 219 WIRTTDFSGSKSIG 232
Score = 38 (18.4 bits), Expect = 6.4e-97, Sum P(5) = 6.4e-97
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVG 36
E T+ + V + + I A +L+++LE +G
Sbjct: 4 ETTTNRSTVKISNVPQTIVADELLRFLELHLG 35
Score = 37 (18.1 bits), Expect = 6.4e-97, Sum P(5) = 6.4e-97
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 63 EVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVS 109
E+ T D K A V F T +RA + +L L++S
Sbjct: 43 EIPTTRDNWKPRDFARVQFTTLEVKSRAQLLSSQSKLLFKTHNLRLS 89
>UNIPROTKB|G4NJ50 [details] [associations]
symbol:MGG_02748 "RNA-dependent RNA polymerase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007855 Pfam:PF05183 EMBL:CM001237
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 RefSeq:XP_003721007.1
EnsemblFungi:MGG_02748T0 GeneID:5050479 KEGG:mgr:MGG_02748
Uniprot:G4NJ50
Length = 1407
Score = 459 (166.6 bits), Expect = 1.3e-75, Sum P(2) = 1.3e-75
Identities = 133/437 (30%), Positives = 226/437 (51%)
Query: 301 KEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLL-RCQPREVIVTALKHIYSYKRPVFDA 359
K +++E+ + + A + +L + ++ F + L +P + + L+++ +++
Sbjct: 370 KVQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIM-LEYVVDRNVKLYNP 428
Query: 360 YEKLKDVQECLIKNPKLNEGPKNIDDIAEV-RRLVITPTKAYW---FLES--------KD 407
+ KD + P + P+ + + R++ +TP+ Y +E+ +
Sbjct: 429 MQLFKD-EGASTYWPDIT--PEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRHYNE 485
Query: 408 VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
DRFLRV F DE L T + AP N +F RV +L +G ++
Sbjct: 486 HKDRFLRVQFTDE-LPTGRLH------AP-------NDLGADDEIFSRVYRVLKNGIHIG 531
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSST 526
R Y FLAF S+Q+R++S +FF G+ + I+ WMG F+ +N+ KYAAR+G CFS+T
Sbjct: 532 DRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTT 591
Query: 527 HATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA 586
+ + + +PDI++NGY F+DG+GKI+ A+ +++ LKLD P SA+Q R
Sbjct: 592 RSIDRVAMPWIK-TIPDIEKNGYCFTDGVGKISSLWAVVISENLKLDYIP--SAFQFRMG 648
Query: 587 GYKGVVACWPAKD-DGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLN 645
G KGV+ W +D G + +R S KF++ H+ LE+ + F LNRQ I++L++L
Sbjct: 649 GCKGVLVVW--EDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLG 706
Query: 646 VSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQG--NTAAIMLSAGFKPQTEPHL 703
V +E+F ++ A +K N + + A +LT E NT A ++ AGF EP +
Sbjct: 707 VKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFV 766
Query: 704 QGML----TYELGELKE 716
ML T+ + LKE
Sbjct: 767 CTMLRLWRTWSVKTLKE 783
Score = 398 (145.2 bits), Expect = 1.3e-75, Sum P(2) = 1.3e-75
Identities = 118/376 (31%), Positives = 189/376 (50%)
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSD 801
++ +VI G ++ +NP L PGD+R+++A+D P+L H+ D +VF Q GDR SG D
Sbjct: 840 SRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGD 899
Query: 802 LDGDLYYVTWDENLIP-PSKKSCPPMECTPAEAKPLT--------C-----HVNHQNLGQ 847
LDGD ++V WDE L+P PS+++ P P A+ L C ++ + +L +
Sbjct: 900 LDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPR 959
Query: 848 ICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEE 907
I +AH+ AD+ YGA DE C+ LA L + AVD PKTG + L P ++P FME +
Sbjct: 960 IAHAHLAQADK--YGAKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFME-KA 1016
Query: 908 YQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVD--FTADARN 965
Y S KILG+LY Q+K N + E+ + + +L G + +AR
Sbjct: 1017 RGRYHSRKILGKLYDQVKPV---NFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARK 1073
Query: 966 QKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVF- 1024
K YD + ++GQ+ + EF ++S +SR+ G Q +L + VF
Sbjct: 1074 LKTLYDQSIMRIMGQHEI-ATEFE-VFSAFVLSSRRVGS-QYKLGEIVGQQSATLKTVFR 1130
Query: 1025 EKMNSDFELSDNEKNV------LYEQKASAWYQVTYHREWVKKSL-DLLEQG---SARSV 1074
EK + E + + A Y+VT E +K +L + +G + +S+
Sbjct: 1131 EKCIAALETVSGRTGIKPRDIEAFGPFVVAMYKVT--DEEIKIALHECKTRGVKANPKSM 1188
Query: 1075 VLLSFAWIANDYLARI 1090
L++F WI + L ++
Sbjct: 1189 PLITFPWIFDQILVQL 1204
Score = 47 (21.6 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 675 VLTASCAEQGN-TAAIMLSAGFKPQTEPHLQGMLTYELGELKECQ 718
++T+ C+ G TAA L+ P+ L+ T E+G+L E +
Sbjct: 1342 IMTSICSASGKQTAASSLATSTTPRVM-RLEIESTNEIGDLIELE 1385
Score = 43 (20.2 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 115 PFRLNQRGGTSAPLKLPDVYVEI 137
P NQR + +KLP++++++
Sbjct: 813 PASPNQRPRLNGNMKLPEIFLQV 835
>POMBASE|SPAC6F12.09 [details] [associations]
symbol:rdp1 "RNA-directed RNA polymerase Rdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0005724
"nuclear telomeric heterochromatin" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0030702 "chromatin silencing at
centromere" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0031048 "chromatin silencing by small RNA"
evidence=IDA] [GO:0031060 "regulation of histone methylation"
evidence=IMP] [GO:0031380 "nuclear RNA-directed RNA polymerase
complex" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0034613 "cellular protein
localization" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0071276 "cellular response to cadmium
ion" evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] InterPro:IPR007855 Pfam:PF05183 PomBase:SPAC6F12.09
GO:GO:0005829 EMBL:CU329670 GO:GO:0034613 GenomeReviews:CU329670_GR
GO:GO:0071276 GO:GO:0071585 GO:GO:0003723 GO:GO:0030702
GO:GO:0000070 GO:GO:0031048 GO:GO:0005721 GO:GO:0031934
GO:GO:0005724 GO:GO:0045141 GO:GO:0031060 GO:GO:0031380
GO:GO:0003968 eggNOG:NOG307726 KO:K11699 PANTHER:PTHR23079
PIR:T11660 RefSeq:NP_593295.1 IntAct:O14227 STRING:O14227
EnsemblFungi:SPAC6F12.09.1 GeneID:2542198 KEGG:spo:SPAC6F12.09
OMA:RISAQNT OrthoDB:EOG44QX81 NextBio:20803268 Uniprot:O14227
Length = 1215
Score = 397 (144.8 bits), Expect = 1.8e-66, Sum P(3) = 1.8e-66
Identities = 110/342 (32%), Positives = 178/342 (52%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
+++L +TPT +S + +R +R F D + M + Y ++ S+ F
Sbjct: 454 IKKLYVTPTTLRIVEDSLEAGNRVIR-NFKDFANRFMRVQITDEYYKQKIRG-GSDGFRN 511
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
+ ++ R++ +L+ G + + Y FLAF ++QLR+H A+FF+ + + I+ WMG+F+
Sbjct: 512 EK-LYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIREWMGDFS 570
Query: 509 AKN-IAKYAARMGLCFSSTHATVEIPPTEVDHELPD-IKRNGYVFSDGIGKITPDLAMEV 566
N ++KYAARMG CFS+T EI VD L D I RN + F+DG+G + + +
Sbjct: 571 EINSVSKYAARMGQCFSTTK---EINRFCVDISLQDDIVRNNHCFTDGVGMASLSVIRRL 627
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD----DGIRMSLRGSMKKFKSCHTSLEI 622
+ +K + PSA+Q R GYKGV++ P G + R S KFKS H++LE+
Sbjct: 628 SLEVK-NHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHSTLEV 686
Query: 623 CSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAE 682
+RF LN Q+ITLL L V +F + S SK+N + + + +L + E
Sbjct: 687 IKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDNVDE 746
Query: 683 QGNTAAI--MLSAGFKPQTEPHLQGMLT--YE--LGELKECQ 718
+T I + AGF + + + +L YE L +KE Q
Sbjct: 747 YHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQ 788
Score = 217 (81.4 bits), Expect = 1.8e-66, Sum P(3) = 1.8e-66
Identities = 58/157 (36%), Positives = 81/157 (51%)
Query: 709 YELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRIL 768
Y+ L + FIQ++++S + GS K +VI G ++A+NP L PGDVR+
Sbjct: 812 YDDAVLSVPEIFIQITDTS-----TSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVC 866
Query: 769 EAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC 828
+AV EL HL + +VFP GDR SG DLDGD Y V WD+ L+P P +E
Sbjct: 867 KAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLES 926
Query: 829 TPA------EAKPL--------TCHVNHQNLGQICNA 851
+P E KPL ++ + +LG I NA
Sbjct: 927 SPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNA 963
Score = 207 (77.9 bits), Expect = 1.8e-66, Sum P(3) = 1.8e-66
Identities = 77/305 (25%), Positives = 141/305 (46%)
Query: 817 PPSKKSCPPMECTPAEAKPL--------TCHVNHQNLGQICNAHVVHA---DRSEYGAFD 865
PP +S P E KPL ++ + +LG I NA A D + G F
Sbjct: 921 PPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFG 980
Query: 866 ENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK 925
C+ LA++ + AVD K+G M + PK+YPDFM+ + ++++S +G+++R
Sbjct: 981 NVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIFRYAA 1040
Query: 926 GAYDENISVSSEVDINPV-DIHYDTDLEVPG-SVDFTADARNQKCSYDGQLNGLLGQYNV 983
E+ NP+ + YD +++P ++ A K YD L ++ ++++
Sbjct: 1041 RFQRES---GRPATYNPIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMARFDI 1097
Query: 984 NRK-EFRHIWSMPKYNSRKQ-GE--LQERLKHSYSAFRKEFRQVF-EKM----NSDFELS 1034
+ + E + + K + K E L+E + + +K++ Q + EK S F+ S
Sbjct: 1098 STEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCALSNQSAFDSS 1157
Query: 1035 DNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKC 1094
+ E+ + +A Y VTY + KS+ G+ + VL+SF ++ + L ++ K
Sbjct: 1158 EYEERI--NSAVAATYDVTYDQR--VKSV-----GNGTTEVLISFPYLFSSRLCQLSRKA 1208
Query: 1095 QEMAN 1099
AN
Sbjct: 1209 MLTAN 1213
>WB|WBGene00004510 [details] [associations]
symbol:rrf-3 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007855 Pfam:PF05183 EMBL:Z48334 GO:GO:0003968
PANTHER:PTHR23079 EMBL:Z66500 GeneTree:ENSGT00390000016620
RefSeq:NP_495713.2 IntAct:G5EE53 EnsemblMetazoa:F10B5.7
GeneID:174315 KEGG:cel:CELE_F10B5.7 CTD:174315 WormBase:F10B5.7
OMA:HISKAKI Uniprot:G5EE53
Length = 1765
Score = 307 (113.1 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 97/323 (30%), Positives = 152/323 (47%)
Query: 650 IFWTVQASMAS-KLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLT 708
I W + A +L++ + D+ F + + + A I L P + G++
Sbjct: 998 IDWNAASKRAGFELSVDPLIRDMLFSIYRYNIIHHISKAKIFLP----PSLGRSMYGVVD 1053
Query: 709 YELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVIN-GFVVIAKNPCLRPGDVRI 767
E G L+ Q FIQ S S +T ++ G V+I KNPC PGDVR+
Sbjct: 1054 -ETGLLQYGQVFIQYSPS------------IRQTSNRPILKTGKVLITKNPCHVPGDVRV 1100
Query: 768 LEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSC---P 824
+AV +P L HL D +VFPQ G RPH +E +GSDLDGD Y + WD+ ++ + P
Sbjct: 1101 FDAVWQPALAHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMVFP 1160
Query: 825 PMECTPAEAKPLTC--------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAA 876
+ +P T ++ ++G++ +AH+ +AD +G F ENC +A A
Sbjct: 1161 SSSAAEEDKEPTTDDMVEFFLRYLQQDSIGRMSHAHLAYADL--HGLFHENCHAIALKCA 1218
Query: 877 TAVDSPKTG-KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVS 935
AVD PK+G + S + + PD+M Y S ++ G+L+R+ + E +
Sbjct: 1219 VAVDFPKSGVPAEPLSSFEQCEMTPDYMMSGGKPMYYSTRLNGQLHRKARKV--EEVLEE 1276
Query: 936 SEVDINPVDIHYDTDLEVPGSVD 958
E + + YD L P VD
Sbjct: 1277 FETRGSVFEREYDK-LICPEDVD 1298
Score = 302 (111.4 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 112/437 (25%), Positives = 211/437 (48%)
Query: 307 EIMFLVNAVMHKGILNQHQLSDSFFD-LLRC--QPREV-IVTALKHIYSYKRPVFDAYEK 362
E +FL ++ +G+ Q ++ + LL + R++ +VTA +Y ++ ++ K
Sbjct: 602 EPLFL--KLVRRGMKECSQATEETLEQLLNAFDERRQIDVVTAFTTMYQSRKIQYERLLK 659
Query: 363 LKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGL 422
+ +Q+ + P PKN +A+V ++TP++ + +R +R D L
Sbjct: 660 GESLQDVGLAKPL----PKNCVSVAKV---IVTPSRILLMAPEVMMVNRVVRRFGPDYAL 712
Query: 423 QTMNANVLSYYVAPIVKDITSNSFSQKTGVFKR-VKSILSDGFNLCGRRYSFLAFSSNQL 481
+ + + +A ++D + N+ + + + L +G + R YSFL +S++Q+
Sbjct: 713 RCVFRDDNLGRLA--IRDFSINNIDHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSNSQM 770
Query: 482 RDHSAWFFSK-----VGETS--VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIP 533
RD + ++ GE + V DI+ WMG+F A ++ K +RMG CF+ TV +
Sbjct: 771 RDQGCYLYAPRVNALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTVRL- 829
Query: 534 PTEVDHEL--PDIK---RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGY 588
E H + PDI+ N Y FSDG G+I+ LA +++IL+L P+ +Q+R+ G+
Sbjct: 830 --ERHHWIVEPDIEGGVENKYCFSDGCGRISIKLATHISKILQL--KEVPACFQVRFKGF 885
Query: 589 KGVVACWPAKDDGIRMS---LRGSMKKF-----KSCHTSLEICSWTRFQPGFLNRQIITL 640
KG++ P DD I M R S +KF + LE+ + P LNR IT+
Sbjct: 886 KGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFITI 945
Query: 641 LSTLN----------VSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIM 690
L ++ +++ + + ++ + S N+++ + A E++ + AA
Sbjct: 946 LDQVSEKQSASSHRRITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAASK 1005
Query: 691 LSAGFKPQTEPHLQGML 707
AGF+ +P ++ ML
Sbjct: 1006 -RAGFELSVDPLIRDML 1021
Score = 38 (18.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAY 928
ME ++Y Y ++K++ Y ++ +
Sbjct: 1350 MERDDYSFYHTDKVVELRYEKLYAVF 1375
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 546 (197.3 bits), Expect = 8.0e-46, Sum P(3) = 8.0e-46
Identities = 195/643 (30%), Positives = 304/643 (47%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETSVLDIKNWMGEFTAKNIA 513
R+K IL G + G+ YS+ S++QLR++S+WF S ++G +V K W G N+
Sbjct: 1266 RIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTV---KIWSGIEHVDNVR 1322
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K+ +GL FS+T TV +P + + + DI RN +VF++G G+I P+LA + + +
Sbjct: 1323 KFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHVFTEGCGEIGPELAKHLNE--NYN 1379
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS--C---HTSLEICSWTRF 628
P AYQ+R G KG++ D + +R SM KF C H +LEICS +
Sbjct: 1380 FRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDEHRTLEICSVSTT 1439
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQ-------ASMASKLNLMLVASDVAFEVLTASCA 681
LNRQ+I+LLSTL D +F+ +Q A + + N A F +T
Sbjct: 1440 SRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAIVEFFPDITEGEL 1499
Query: 682 EQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE----LKECQCFIQVSESSLENCFSKHGS 737
Q +L + +K + E +Q E+ + L C + +++ +
Sbjct: 1500 YQDPYIRRILISLYKLKME-RIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQLEEEDE 1558
Query: 738 RFAETKKLQ-VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNE 796
+ +K + VI G V++ KNPC PGDVR L+AVD L HL + LVF KGD P+ E
Sbjct: 1559 DDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHLRNVLVFSTKGDVPNFKE 1618
Query: 797 ASGSDLDGDLYYVTWDENLIPPSKKSCPPM---ECTPAEAK-------PL------TCHV 840
SGSDLDGD Y+ +D++LI KS E K P + +V
Sbjct: 1619 ISGSDLDGDRYFFCYDKSLIGNRSKSETAYLGDETVSNNDKKANVFNDPFALSSMYSTNV 1678
Query: 841 NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYP 900
Q LG++ N+H+ +D +GA E I ++K +D PKTG T+P K+
Sbjct: 1679 ERQELGKMYNSHLAISDL--FGANHEFSIQISKECFKEIDYPKTGIHGTIP-----KEAN 1731
Query: 901 DFMEIEEYQTYKSNKILGRLYRQIK---GA-YDENISVSSEVDINPVDIHYDTDLEVPGS 956
+++ + Y Y + R+Y Q K G YD+ + D P +I D V
Sbjct: 1732 VWLKTKGYPHYMQRENSTRVYYQSKTIMGKMYDQIDQLVYIGDFLP-NISLDKSNLVDDY 1790
Query: 957 VDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPK-YNSRKQG-ELQERLKHSYS 1014
+ A+ Y Q++ LL Y+ +E I + + + S K +++ +K+ Y
Sbjct: 1791 EIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYI 1850
Query: 1015 AFRKEFRQVFEKMNSDFELSDN---EKNVLYEQKASAWYQVTY 1054
++ F F K + + +N V E+K SAWY V Y
Sbjct: 1851 KIQQTFENEFLKEFGE-QHKENCLLIHRVNIEKKVSAWYHVAY 1892
Score = 46 (21.3 bits), Expect = 8.0e-46, Sum P(3) = 8.0e-46
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 179 ALKSSAEHAVIK---CEFKVFLVREIDIVKQYSEL 210
+ K+S + ++I+ CEF V +E+ I YS++
Sbjct: 486 SFKTSGQESLIETSICEFLVSNSKELQIFLNYSDV 520
Score = 42 (19.8 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 9 VDTQVSVGGFDRDIKAVDL-VKYLENEV 35
++ Q+ G D+DIK V L + ++E ++
Sbjct: 807 INNQLDGGPLDKDIKCVILSIYHIEIDI 834
Score = 37 (18.1 bits), Expect = 8.0e-46, Sum P(3) = 8.0e-46
Identities = 21/115 (18%), Positives = 47/115 (40%)
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSD---FELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
+L++ +K S S E + K+ D F+ ++ L + S W++ ++++
Sbjct: 2013 QLKDEIKTS-SFISAEACSII-KIQGDIPLFKFKIDKIQCLIGLETSKWHETLVQQQYIT 2070
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVAD 1115
K+ +L S++ W N + + E+ N K NL + + +
Sbjct: 2071 KNPSIL------SILFSIIDWSINSLF--VDSETGEIINNSKVYSSLNLQKVIVE 2117
>WB|WBGene00004508 [details] [associations]
symbol:rrf-1 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS;IDA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] [GO:0005844
"polysome" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] InterPro:IPR007855 Pfam:PF05183
GO:GO:0005634 GO:GO:0048471 GO:GO:0005844 GO:GO:0030422 EMBL:Z78419
GO:GO:0003968 PANTHER:PTHR23079 UniGene:Cel.19452 GeneID:172523
KEGG:cel:CELE_F26A3.8 CTD:172523 GeneTree:ENSGT00390000016620
EMBL:AF159144 RefSeq:NP_001250555.1 ProteinModelPortal:G5ECM1
EnsemblMetazoa:F26A3.8a WormBase:F26A3.8a OMA:QIQIPKE
NextBio:875887 Uniprot:G5ECM1
Length = 1601
Score = 302 (111.4 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 72/189 (38%), Positives = 106/189 (56%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+ Q F+Q +++ + + + + +++ G V++ KNPC+ PGDVRI E
Sbjct: 858 ETGRLQYGQIFVQYTKNYKKKLPPRDSNN--KVHGSEIVTGTVLLTKNPCIVPGDVRIFE 915
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI-----PPS----K 820
AVD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y V WD+ L+ P +
Sbjct: 916 AVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDFAVE 975
Query: 821 KSCPPMECTPAEAKPLTCHVNHQNL---GQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
K P + + +V + L GQI N+H+ ++D +YG C+ LAK
Sbjct: 976 KIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSD--QYGLNSRVCMDLAKKNCQ 1033
Query: 878 AVDSPKTGK 886
AVD K+G+
Sbjct: 1034 AVDFTKSGQ 1042
Score = 163 (62.4 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 67/226 (29%), Positives = 108/226 (47%)
Query: 406 KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
KD R LRVTF D+ + M +NV + D T+N + + GV R+ + GF
Sbjct: 493 KD-GTRVLRVTFRDDNNKKMRSNVTGKLL-----DRTANKYLEH-GV--RIAN-REYGFL 542
Query: 466 LCGRR-------YSFLAFSSNQL-RDHSAW-FFSKVGETSVLD-IKNWMGEFTA-KNIAK 514
C Y + F+ QL R + S + +D ++ +G F+ +N+ K
Sbjct: 543 GCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPK 602
Query: 515 YAARMGLCFSSTHAT-VEIPPTEV--DHELPDIKR-NG--YVFSDGIGKITPDLAMEVAQ 568
AR+G CF+ + T V + + ++L + NG Y FSDG+G ++ A EV+Q
Sbjct: 603 LMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQ 662
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
++ G PS +QIR+ G KGV+A P D+ + +L + K
Sbjct: 663 AMQF-GKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMK 707
Score = 144 (55.7 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 65/248 (26%), Positives = 107/248 (43%)
Query: 882 PKTGKIVTMPSHLKPKKYPDF-MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDI 940
P T +++ P + P++ PDF M E Y S ++ G+L+R+ + A D I +S E D
Sbjct: 1055 PVTFEVIP-PEN--PERIPDFHMGNERSPMYVSPRLCGKLFREFQ-AIDNVIKISEERD- 1109
Query: 941 NPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK---------EFRHI 991
+I D + V G + A+ Q SY+GQL ++ Y + + E R+
Sbjct: 1110 EQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEGEIMSGCIVEMRNR 1169
Query: 992 WS------MPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDN---EKNVLY 1042
S M YN+ + ++ ++ FR+ F + F L N N L
Sbjct: 1170 ISDKDQDDMSFYNTNQM--IETKMTSLVCKFRETFFEEFGGFTVKCTLLPNAYDNGNCLN 1227
Query: 1043 EQKASAWYQVTYHR-EWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK---IKCQEMA 1098
+ +V W + + + S R V LSFAWIA D +A++K + E
Sbjct: 1228 YRCEDPDQEVRKKAVAWYRACYECAQ--STREVRKLSFAWIAYDVIAKVKETNVLNNERM 1285
Query: 1099 NIGKSKPV 1106
IG + P+
Sbjct: 1286 QIGGANPM 1293
Score = 98 (39.6 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 46/225 (20%), Positives = 96/225 (42%)
Query: 306 FEIMFLVNAVMHKGILNQHQLS------DSFFDLLRCQPR---EVIVTALKHIYSYKRPV 356
F I +L+ ++ +G + + QL +F +++ R ++ AL+ + +
Sbjct: 367 FSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLVH----L 422
Query: 357 FDAYEKLKDVQECLIKNPKLNEGPKNIDDIAE---------VRRLVITPTKAYWFLESKD 407
D +++ + +CL K + E K ++ + E VR+++ TPT+ +
Sbjct: 423 IDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPETI 482
Query: 408 VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
+ +R LR F +G + + + ++T + + L G +
Sbjct: 483 MGNRVLR-KFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKY------LEHGVRIA 535
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI 512
R Y FL S++Q+RD+ A+F + + LD + + TA NI
Sbjct: 536 NREYGFLGCSNSQMRDNGAYFMMRFTDKQ-LD-RFYKCNPTASNI 578
Score = 37 (18.1 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 722 QVSESSLENCFSKHGSRFAETKKLQVIN 749
QVSE +C + SR E Q+++
Sbjct: 753 QVSEMQSLDCHKRITSRIEELMDRQILS 780
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 468 (169.8 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 187/649 (28%), Positives = 296/649 (45%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETSVLDIKNWMGEFTAKNIA 513
R+K IL G + G YS+ S++QLR++S+WF S ++G +V K W G N+
Sbjct: 1251 RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTV---KIWSGIEHVDNVR 1307
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K+ +GL FS+T TV +P + + + DI RN + F++G G+I P+LA + +
Sbjct: 1308 KFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHEFTEGCGEIGPELAKHLNENYNFR 1366
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGI--RMSL-RGSMKKFKSCHTSLEICSWTRFQP 630
S +I VV GI R S+ + + H +LEICS +
Sbjct: 1367 PSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDEHRTLEICSVSTTSR 1426
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQ-------ASMASKLNLMLVASDVAFEVLTASCAEQ 683
LNRQ+I+LLSTL D +F+ +Q A + + N A F +T Q
Sbjct: 1427 CKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAIVEFFPDITEGELYQ 1486
Query: 684 GNTAAIMLSAGFKPQTEPHLQGMLTYELGE----LKECQ---------CFIQVSESSLEN 730
+L + +K + E +Q E+ + L C F+Q+ E ++
Sbjct: 1487 DPYIRRILISLYKLKME-RIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQLEEEDEDD 1545
Query: 731 CFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD 790
G ++ + VI G V++ KNPC PGDVR L+AVD L HL + LVF KGD
Sbjct: 1546 --DDDGRKYEK-----VIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHLRNVLVFSTKGD 1598
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLI---PPSKKSCPPMECTPAEAK-------PL---- 836
P+ E SGSDLDGD Y+ +D++LI S+ + +E K P
Sbjct: 1599 VPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVSNNDKKANVFNDPFALSS 1658
Query: 837 --TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
+ + Q LG++ ++H+ +D +YGA + I ++K +D PKTG T+P +
Sbjct: 1659 MYSTNAERQELGKLYHSHLAISD--QYGANHKYSIQISKECFKEIDYPKTGIHGTIPKEV 1716
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIK---GA-YDENISVSSEVDINPVDIHYDTD 950
+ ++ Y Y + R+Y Q K G YD+ + D P +I D
Sbjct: 1717 NIR-----LQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQIDQLVYIGDFLP-NISLDKS 1770
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPK-YNSRKQG-ELQER 1008
V G + A+ Y Q++ LL Y+ +E I + + + S K +++
Sbjct: 1771 NLVDGYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLDQGFISDKVSKDIKGE 1830
Query: 1009 LKHSYSAFRKEFRQVFEKMNSDFELSDN---EKNVLYEQKASAWYQVTY 1054
+K+ Y ++ F F K + + +N V E+K SAWY V Y
Sbjct: 1831 MKNDYIKIQQTFENEFLKEFGE-QHKENCLLIHRVNIEKKVSAWYHVAY 1878
Score = 46 (21.3 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 179 ALKSSAEHAVIK---CEFKVFLVREIDIVKQYSEL 210
+ K+S + ++I+ CEF V +E+ I YS++
Sbjct: 497 SFKTSGQESLIETSICEFLVSNSKELQIFLNYSDV 531
Score = 42 (19.8 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 22/115 (19%), Positives = 47/115 (40%)
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSD---FELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
+L++ +K S S E + K+ D F+ ++ L + S WY+ ++++
Sbjct: 1999 QLKDEIKTS-SFISAEACSII-KIQGDIPLFKFKIDKIQCLIGLETSKWYETLVQQQYIT 2056
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVAD 1115
K+ +L S++ W N + + E+ N K NL + + +
Sbjct: 2057 KNPSIL------SILFSIIDWSINSLF--VDSETGEIINNSKVYSSLNLQKVIVE 2103
Score = 39 (18.8 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 10 DTQVSVGGFDRDIKAVDL-VKYLENEV 35
+ Q+ G D+DIK V L + ++E ++
Sbjct: 819 NNQLDGGPLDKDIKCVILSIYHIEIDI 845
>ASPGD|ASPL0000040001 [details] [associations]
symbol:rrpC species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR007855 Pfam:PF05183
EMBL:BN001306 GO:GO:0003968 eggNOG:NOG307726 KO:K11699
PANTHER:PTHR23079 EMBL:AACD01000048 RefSeq:XP_660321.1
EnsemblFungi:CADANIAT00010398 GeneID:2874470 KEGG:ani:AN2717.2
HOGENOM:HOG000166092 OMA:KHKARIP OrthoDB:EOG4VMJPG Uniprot:Q5B9R3
Length = 1203
Score = 306 (112.8 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 106/378 (28%), Positives = 186/378 (49%)
Query: 306 FEIMFLVNAVMHKGILNQH---QLSDSFFDLLRCQP----REVIVTALKHIYS---YKRP 355
F I+F + A+++ G L + +L+ + + + R + V ++K +++ + P
Sbjct: 288 FGILFQLQALVYNGYLPPNIVLRLTRKLASITKTRKVQGRRPISVNSMKRLFNLIDWPSP 347
Query: 356 VFDAYE-KLKDVQECLIKNPK-LNEGPKNID-------DIAEVRRLVITPTKAYWFLESK 406
D E +K + E + N K L EG + +A + R+V+TP++
Sbjct: 348 FGDPEEFSIKRLLEVITGNDKDLGEGASEAEALFQPAPHLAHIHRVVVTPSRITLHGPET 407
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
+ +R LR F + + + +DI N + +F R K++ ++GF +
Sbjct: 408 EPLNRILR-RFPNHHEYFIRVQ----FCDENGEDIYFNPRINNSLIFARFKNVFANGFQI 462
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKV----GET-SVLDIKNWMGEFTA-KNIAKYAARMG 520
GR Y+FL FS + LR SAWF + G S I +G F+ + A+ AAR+G
Sbjct: 463 AGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFSEITSPARCAARIG 522
Query: 521 LCFSSTHATVEIPPTEVDH-ELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPS 579
FS T V + + +PD++ G VFSDG+G I+ A+++ + + P+
Sbjct: 523 QAFSETPFAVNLKENGIRVLRIPDVQVGGRVFSDGVGTISAK-AVDIIHGVLPPRNGAPT 581
Query: 580 AYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEIC-SWTRFQPGFLNRQI 637
+QIR G KG+++ P + G ++ +R SM KF++ ++EIC S ++ P FLNRQ+
Sbjct: 582 CFQIRLGGAKGMLSLDP-RLRGSKICIRPSMTKFQTDDQVNVEICGSGSKPIPLFLNRQV 640
Query: 638 ITLLSTLNVSDEIFWTVQ 655
I +L + V E F T+Q
Sbjct: 641 IKILEDMGVDREWFMTLQ 658
Score = 193 (73.0 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 62/213 (29%), Positives = 99/213 (46%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLC---DCLVFPQKGDRPHTNEASGSDLDGDLYY 808
+++ ++P L GD++ V P+ H L +C+VF QKG R ++ SG DLDGDLY
Sbjct: 773 LLVTRSPALHNGDIQYPYNVVPPKGHPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYN 832
Query: 809 VTWDENLIP-----PSK-KSCPPMECTPA-EAKPLTCH----VNHQNLGQICNAHVVHAD 857
+ WD P P+ PP++ E + + + LG I H++ AD
Sbjct: 833 IIWDPAAAPKRVFTPANYPRNPPLDIKRVVEREDMANFFVEFMQSDRLGVIATKHMILAD 892
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKIL 917
+ E G +C LA+L +TAVD KTG +P LK + + + KI
Sbjct: 893 QMELGTSHSDCKKLAQLHSTAVDFSKTG----IPVRLKEMPFVNRSRPDFLAPGPLAKIH 948
Query: 918 GRLYRQIKGAYDENISVSSEVDINPVDIHYDTD 950
R Q++ Y ++D +PV +Y ++
Sbjct: 949 DRQNIQLEARYVHPYP-DDDIDFSPVHKYYRSE 980
Score = 69 (29.3 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 893 HLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
H P DF + +Y Y+S KILG+LYR I + + V+ NP +
Sbjct: 961 HPYPDDDIDFSPVHKY--YRSEKILGKLYRAINEHEIWTKDIHTTVNSNPTAV 1011
Score = 46 (21.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 113 ENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQD 144
E PF +N + L++PDV ++G V D
Sbjct: 527 ETPFAVNLKENGIRVLRIPDV--QVGGRVFSD 556
Score = 39 (18.8 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 982 NVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD 1030
N +R +F + K + R+ +L+ R H Y +F V + S+
Sbjct: 932 NRSRPDFLAPGPLAKIHDRQNIQLEARYVHPYPDDDIDFSPVHKYYRSE 980
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 330 (121.2 bits), Expect = 3.6e-33, Sum P(4) = 3.6e-33
Identities = 121/395 (30%), Positives = 195/395 (49%)
Query: 454 KRVKSILSDGFNLC---GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMG-EFTA 509
K ++ I ++G + G++Y F+ S +Q+R++SAWF + T+ NW G ++ +
Sbjct: 1130 KTIERIFNNGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLEDKVTNEKSALNWSGIKYES 1189
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQ 568
+ K + L FS+T + I E+ +PDI + G+ F++G G I L + Q
Sbjct: 1190 LQMIKVFRNLCLLFSTTLKSQVIYKIEM---IPDIISKEGHNFTEGCGFIGSKLVELINQ 1246
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF----KSC-----HTS 619
+ S AYQIR G KGV+ D+ + + +R SM KF KS H +
Sbjct: 1247 QNNYNSST--CAYQIRLGGSKGVLVLNENIDE-MSLQIRPSMSKFELDYKSGQLDEEHKT 1303
Query: 620 LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTAS 679
LEI S + LNRQ ITLLS V D F + ++ LV +++ E+L
Sbjct: 1304 LEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEVELNQNAQTLVDVNLSKELL--- 1360
Query: 680 CAEQGNTAAIMLSAGFKPQTEPHLQGMLT--YELGELK-ECQCFIQVSESS--LENCFSK 734
G+ + ++ + +++ +L Y+ +K + +C+I+V ES L C +
Sbjct: 1361 ----GDFFQHITE--YELFNDYYIRSILLKLYKSKLIKIQDKCWIEVKESRNLLGVCDTS 1414
Query: 735 ----HGSRFAETKKL---------QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD 781
+ + E ++L +VI G V + KNPC PGDVR L+A+D P L+ +
Sbjct: 1415 GTLPEDTVYIEVEELDPIDNLMKPKVIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRN 1474
Query: 782 CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
L F G P+ + SGSDLDGD Y+V +D+ LI
Sbjct: 1475 VLFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLI 1509
Score = 149 (57.5 bits), Expect = 3.6e-33, Sum P(4) = 3.6e-33
Identities = 66/265 (24%), Positives = 109/265 (41%)
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC-HVNHQN 844
P G+ N G + D Y D ++ P+ + TP + + +V+
Sbjct: 1518 PYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKLSDIYLKNVDKSK 1577
Query: 845 LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP----SHLKPKKYP 900
LG I N H+ +D + + N I +A A VDS KT +P S LK K YP
Sbjct: 1578 LGTISNTHLAISDIEKVSSI--NSIKVAIQCAIEVDSVKTSVHGIIPRDVKSILKEKGYP 1635
Query: 901 DFMEIEEYQTYKSNKILGRLY----RQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGS 956
FM+I+ T++ R Y R I YD ++ D P + D L V G
Sbjct: 1636 HFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDSAENLLWFGDFLP-EAKVDESLLVQGY 1694
Query: 957 VDFTADAR-NQKCSYDGQLNGLLGQYNVNRKEFRHIWSM-PKYNSRKQGELQERLKHSYS 1014
++ Y ++N +L ++ +E I M P+++ + E + K +Y+
Sbjct: 1695 KEYLNHENFTTYMDYKSKINSILRRFGAQSEEDLLIGFMDPQFSEKLSIEAKAHFKSNYN 1754
Query: 1015 AFRKEFRQVFEKMNSDFELSDNEKN 1039
+ +K F F +N + S+N N
Sbjct: 1755 SIQKLFYHNF--LNEFRKKSNNNNN 1777
Score = 49 (22.3 bits), Expect = 3.6e-33, Sum P(4) = 3.6e-33
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1024 FEKMNSDFELSDNEKNVL-YE 1043
FE+ + +FELS+N N+ YE
Sbjct: 2102 FEESDIEFELSNNNNNIYSYE 2122
Score = 46 (21.3 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 1005 LQERLKHSY-SAFRKEFRQVFEKMN--SDFELSDNEK--NVLY---EQKASAWYQVTY 1054
+Q+ H++ + FRK+ N S ++ + E+ N Y E+K AWY ++Y
Sbjct: 1756 IQKLFYHNFLNEFRKKSNNNNNNNNNLSMLQIEEEEELINENYTEIEKKVCAWYFISY 1813
Score = 39 (18.8 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVF 551
++ ++YA + LC S T ++E P + + D NG ++
Sbjct: 298 RDSSEYATIVNLCNSLTTLSIE-GPQQCLTSITDGFVNGIIY 338
Score = 37 (18.1 bits), Expect = 3.6e-33, Sum P(4) = 3.6e-33
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 402 FLESKDVADRFLRVTFMDEGLQTMNANVL 430
F+E++D + L + ++ + +N ++
Sbjct: 400 FVETRDTGKKLLNLLISEKEISKLNPKLI 428
>WB|WBGene00001214 [details] [associations]
symbol:ego-1 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IGI] [GO:0031081
"nuclear pore distribution" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] InterPro:IPR007855 Pfam:PF05183 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0010171
GO:GO:0048477 GO:GO:0007283 GO:GO:0000910 GO:GO:0007281
GO:GO:0000794 GO:GO:0043186 GO:GO:0031081 EMBL:Z78419 GO:GO:0003968
PANTHER:PTHR23079 BRENDA:2.7.7.48 GeneTree:ENSGT00390000016620
EMBL:AF159143 PIR:T21381 RefSeq:NP_492132.1 UniGene:Cel.23243
ProteinModelPortal:G5EBQ3 IntAct:G5EBQ3 EnsemblMetazoa:F26A3.3
GeneID:172524 KEGG:cel:CELE_F26A3.3 CTD:172524 WormBase:F26A3.3
OMA:LRSMMEN NextBio:875891 GO:GO:0070090 Uniprot:G5EBQ3
Length = 1632
Score = 295 (108.9 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
Identities = 75/191 (39%), Positives = 106/191 (55%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+ Q F+Q +++ K+ +R QV+ G V++ KNPC+ GDVRI E
Sbjct: 890 ETGRLQYGQIFVQYTKNLALKLPPKNAAR-------QVLTGTVLLTKNPCIVAGDVRIFE 942
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT 829
AVD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y + WD+ L+ K+ P + T
Sbjct: 943 AVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDPYDFT 1000
Query: 830 PAEAKPL-----------TCHVNHQNL---GQICNAHVVHADRSEYGAFDENCILLAKLA 875
+ K +V + L GQI N+H+ ++D +YG C+ LAK
Sbjct: 1001 SEKQKASFKEDEIDDLMREFYVKYLKLDSVGQISNSHLHNSD--QYGLNARVCMDLAKKN 1058
Query: 876 ATAVDSPKTGK 886
AVD K+G+
Sbjct: 1059 CQAVDFTKSGQ 1069
Score = 165 (63.1 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
Identities = 62/237 (26%), Positives = 109/237 (45%)
Query: 411 RFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
R LR+TF D+ Q M N S + V N + F + S S+
Sbjct: 524 RVLRITFRDDDNQKMRTNKTSTMLEKTVNQYLKNGITVAGRNFGYLGS--SNSQMRDNGA 581
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGET---SVLDIKNWMGEF-TAKNIAKYAARMGLCFSST 526
Y +SS+Q R++ + K T + + +G F T NI K AR+G CF+ +
Sbjct: 582 YFMEKYSSSQCREYERIYQIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQS 641
Query: 527 HAT---VEIPPTEVDHELP---DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSA 580
+ +E ++L ++K + Y FSDG+G ++ A V++++ G PS
Sbjct: 642 RLSGVNLERCTYMTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDF-GKGVPSC 700
Query: 581 YQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEI-CSWTRFQPGFLNRQ 636
+Q R+ G KGV++ P D+ + S+ ++ K S +S + C + Q F++++
Sbjct: 701 FQFRFRGMKGVISIEPLLDNLRQWSISYNISK-PSDDSSWSLNCMFRPSQIKFISKR 756
Score = 157 (60.3 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 68/280 (24%), Positives = 130/280 (46%)
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG-----------KIVTMPS 892
++GQI N+H+ ++D +YG C+ LAK AVD K+G K
Sbjct: 1029 SVGQISNSHLHNSD--QYGLNARVCMDLAKKNCQAVDFTKSGQPPDELERKWRKDEETGE 1086
Query: 893 HLKPKK---YPDF-MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYD 948
+ P++ PD+ M + Y S ++ G+L+R+ K A D+ + +S E D V+I D
Sbjct: 1087 MIPPERAERVPDYHMGNDHTPMYVSPRLCGKLFREFK-AIDDVLKISEERD-EQVEISID 1144
Query: 949 TDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE--FRH-IWSMP-KYNSRKQGE 1004
+++ G ++ A A+N Y+ QL ++ Y + + F I M + + + Q +
Sbjct: 1145 ETIKIDGYTEYMASAKNDLARYNAQLRSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDD 1204
Query: 1005 LQ-----ERLKHSYSAFRKEFRQVF-EKMNSDFELSDNEKNVLYEQKASAWYQVTYHR-- 1056
+ + ++ + K++R++F E+ +E + E Y + ++ +
Sbjct: 1205 MSFFNTNQMIETKLTNLFKKYREIFFEEFEGGWE-GNTEAFSRYGRDSNILQRQCRAPTV 1263
Query: 1057 EWVKKSLDLL-----EQGSARSVVLLSFAWIANDYLARIK 1091
+ +KK++ E R LSFAW+A D +A++K
Sbjct: 1264 QMMKKAVAWYRACYEEARITRENKKLSFAWLAYDVIAKVK 1303
Score = 96 (38.9 bits), Expect = 6.8e-26, Sum P(2) = 6.8e-26
Identities = 27/103 (26%), Positives = 53/103 (51%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
VR+++ TPT+ + + +R LR + +G + + +++ K + +N S
Sbjct: 491 VRKIIFTPTRVIYVAPETLMGNRVLR-RYDHDGTRVLR---ITFRDDDNQK-MRTNKTS- 544
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK 491
T + K V L +G + GR + +L S++Q+RD+ A+F K
Sbjct: 545 -TMLEKTVNQYLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEK 586
Score = 42 (19.8 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 360 YEKLKDVQECLIKNPKLNEGPKNI 383
YE++ ++ + NPK+ KN+
Sbjct: 595 YERIYQIKPPITFNPKIQAARKNL 618
Score = 38 (18.4 bits), Expect = 7.8e-20, Sum P(2) = 7.8e-20
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 431 SYYVAPIVKDITSNSFSQK 449
+++ API +D + +F +K
Sbjct: 359 THFSAPIYRDFITTAFPKK 377
>WB|WBGene00004509 [details] [associations]
symbol:rrf-2 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] InterPro:IPR007855 Pfam:PF05183 GO:GO:0003968
PANTHER:PTHR23079 GeneTree:ENSGT00390000016620 EMBL:AL132848
EMBL:Z81571 RefSeq:NP_493057.1 ProteinModelPortal:G5EFA8
EnsemblMetazoa:M01G12.12 GeneID:173092 KEGG:cel:CELE_M01G12.12
CTD:173092 WormBase:M01G12.12 NextBio:878243 Uniprot:G5EFA8
Length = 1579
Score = 291 (107.5 bits), Expect = 8.5e-33, Sum P(3) = 8.5e-33
Identities = 72/189 (38%), Positives = 103/189 (54%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+ Q F+Q +++ N S + +++ G V++ KNP + PGDVRI E
Sbjct: 839 ETGILQYGQVFVQYTKNH-RNILPPRDSN-RKVLGSEIVTGTVLLTKNPGIVPGDVRIFE 896
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS---------K 820
AVD PELHHLCD +VFPQ G RPH +E +GSDLDGD Y V WD+ L+ +
Sbjct: 897 AVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNEEAFDFAVE 956
Query: 821 KSCPPMECTPAEAKPLTCHVNHQN---LGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
K+ E + +V + +G I N+H+ ++D +YG C+ LAK +
Sbjct: 957 KNLQTYEWEDIDDLMRDVYVEYLKKDLVGLIANSHLHNSD--QYGLTSRVCMNLAKKSCQ 1014
Query: 878 AVDSPKTGK 886
AVD K+GK
Sbjct: 1015 AVDFSKSGK 1023
Score = 180 (68.4 bits), Expect = 8.5e-33, Sum P(3) = 8.5e-33
Identities = 63/229 (27%), Positives = 103/229 (44%)
Query: 389 VRRLVITPTKAYW----FLESKDVADRF-------LRVTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + V F LRVTF D+ + M AN +
Sbjct: 450 VRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELLDIC 509
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
VK + V R L + ++ + R +A + + ++
Sbjct: 510 VKKYLEHGIV----VANRDFGFLGCSSSQMRDNGAYFMVKNTDNRHKNACKMNSKFKPNI 565
Query: 498 LDIKNWMGEFTA-KNIAKYAARMGLCFSSTHAT-VEIPPTE--VDHELPDIKR-NG--YV 550
++N +G F +NI K AR+G CF+ + T V + P + H+L + NG Y
Sbjct: 566 DSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTHDLSGGRSSNGSEYT 625
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD 599
FSDG+G ++ + A EV++++ G PS +Q RY G KGV+A P D
Sbjct: 626 FSDGVGMMSYEFAQEVSRLMSF-GRSVPSCFQFRYRGMKGVLAIDPLLD 673
Score = 156 (60.0 bits), Expect = 4.8e-18, Sum P(4) = 4.8e-18
Identities = 67/277 (24%), Positives = 116/277 (41%)
Query: 845 LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK----IVTM------PSHL 894
+G I N+H+ ++D +YG C+ LAK + AVD K+GK + T +
Sbjct: 984 VGLIANSHLHNSD--QYGLTSRVCMNLAKKSCQAVDFSKSGKPPDELQTTWKTDDATGEM 1041
Query: 895 KP----KKYPDF-MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDT 949
P ++ PD+ + + Y S ++ G+L+R+ +G D + +S E I D
Sbjct: 1042 IPPERAERVPDYHVGSDHMPKYVSPRLCGKLFREFQGI-DNAMKISEEKS-EQYKIEVDE 1099
Query: 950 DLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK---------EFRHIWSMPKYNSR 1000
+ V G ++ DA+ Q SY+GQL + Y + + E R+ S +
Sbjct: 1100 SIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEIMSGCIIEMRNRISDSDQDDM 1159
Query: 1001 KQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
++ +A +FR +F + F+ Y + ++ E ++
Sbjct: 1160 SFYNTNRMIETKMTALVSKFRTIFFQQFGGFQEVCTLLPDAYNESNFFNFRCENPNEEIR 1219
Query: 1061 KSLDLLEQG------SARSVVLLSFAWIANDYLARIK 1091
K + S R LSFAWIA D +A+IK
Sbjct: 1220 KKAVAWYRACYECAKSTREPRKLSFAWIAYDVIAKIK 1256
Score = 114 (45.2 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 60/265 (22%), Positives = 116/265 (43%)
Query: 302 EGVSFEIMFLVNAVMHKGILNQHQ-LSDS-----FFDLLR---CQPREVIVTALKH-IY- 350
+G F I +L+ ++ +G + + Q L+D F L+ + ++ AL+ IY
Sbjct: 349 DGRQFAITYLIECLLSRGAIVKDQVLTDEICWGQFLGLITHYYLENDKLCEAALEDLIYL 408
Query: 351 --SYKR--PVFDAYEKLKDVQECLIKNPKLNEGPKNIDD-IAEVRRLVITPTKAYWFLES 405
KR ++ + K+ Q+ L+ + I++ VR+++ TPT+ +
Sbjct: 409 IDGRKRIGSIWKCFHKI--CQKRLVMQLTNGMSEQEIEEGYQRVRKVIFTPTRVIYTPPE 466
Query: 406 KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
+ +R LR F +G + + + + +N+ + + VK L G
Sbjct: 467 MIMGNRVLR-NFDRDGTHVLRVT----FRDDNNRKMRANATGELLDIC--VKKYLEHGIV 519
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGET--------------SVLDIKNWMGEFTA-K 510
+ R + FL SS+Q+RD+ A+F K + ++ ++N +G F +
Sbjct: 520 VANRDFGFLGCSSSQMRDNGAYFMVKNTDNRHKNACKMNSKFKPNIDSVRNQLGNFLQIE 579
Query: 511 NIAKYAARMGLCFSSTHAT-VEIPP 534
NI K AR+G CF+ + T V + P
Sbjct: 580 NIPKLMARLGQCFTQSRLTGVSLGP 604
Score = 43 (20.2 bits), Expect = 4.8e-18, Sum P(4) = 4.8e-18
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 722 QVSE-SSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLR 761
QVSE SLE C + SR E LQ ++ + C R
Sbjct: 734 QVSEMQSLE-CHRRITSRIEELMDLQTLSFAKQMTDEACFR 773
Score = 40 (19.1 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 98 ELFLNGRALKVSLGPEN 114
+ F R VSLGP+N
Sbjct: 590 QCFTQSRLTGVSLGPDN 606
Score = 37 (18.1 bits), Expect = 8.5e-33, Sum P(3) = 8.5e-33
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 26 DLVKYLENE--VGGVWRC 41
DL+ ++ +G +W+C
Sbjct: 404 DLIYLIDGRKRIGSIWKC 421
>ASPGD|ASPL0000071805 [details] [associations]
symbol:rrpB species:162425 "Emericella nidulans"
[GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA]
[GO:0005721 "centromeric heterochromatin" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0031380 "nuclear RNA-directed
RNA polymerase complex" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0045141 "meiotic telomere
clustering" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031048 "chromatin silencing by
small RNA" evidence=IEA] [GO:0031060 "regulation of histone
methylation" evidence=IEA] [GO:0071585 "detoxification of cadmium
ion" evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] InterPro:IPR007855 Pfam:PF05183 EMBL:BN001303
GO:GO:0003968 PANTHER:PTHR23079 EnsemblFungi:CADANIAT00005632
Uniprot:C8VAM8
Length = 869
Score = 229 (85.7 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 74/237 (31%), Positives = 114/237 (48%)
Query: 454 KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET--SVLD-----IKNWMGE 506
K +L D N RRY+ LA + ++R A ++ T + +D IK +
Sbjct: 239 KNTVLLLPDISNCVIRRYANLADNFLRVRFTDAKHIGRIHATVDNTMDEVLTRIKRALAN 298
Query: 507 FTAKNIAKYA----ARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDL 562
+Y CFS+T A T ++ DI+ NGY+FSDG+G+I+ L
Sbjct: 299 GITIGSTRYEFLAFGNSSSCFSTTRAISGC--TAHVKKIDDIEGNGYIFSDGVGRISKFL 356
Query: 563 AMEVAQILKLDG--SPPPSAYQIRYAGYKGVVACWP-AKDDGIRMSLRGSMKKFKSCHTS 619
A V LK+ PPSAYQ R G KG++ +P A+ + +R S KF +
Sbjct: 357 AQIVKSELKIKTPTKEPPSAYQFRLVGCKGMLIVFPQARPQEVH--IRKSQFKFAALSQG 414
Query: 620 LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
LEI W++F LNRQ+I +LSTL ++D++F +M L+ + + A +L
Sbjct: 415 LEIIRWSQFTVASLNRQLILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLL 471
Score = 209 (78.6 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 36/75 (48%), Positives = 53/75 (70%)
Query: 743 KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDL 802
+K ++I G ++A+NP L PG +R++ AV+ P LHHL D +V P+ GDR + SGSDL
Sbjct: 491 EKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDL 550
Query: 803 DGDLYYVTWDENLIP 817
DGD + V WD++L+P
Sbjct: 551 DGDDFLVIWDQDLLP 565
Score = 61 (26.5 bits), Expect = 8.7e-14, Sum P(2) = 8.7e-14
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
++AD FLRV F D + ++ I + N+ + V R+K L++G +
Sbjct: 258 NLADNFLRVRFTD-----------AKHIGRIHATV-DNTMDE---VLTRIKRALANGITI 302
Query: 467 CGRRYSFLAFSSN 479
RY FLAF ++
Sbjct: 303 GSTRYEFLAFGNS 315
>TAIR|locus:2042808 [details] [associations]
symbol:AT2G05370 "AT2G05370" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 EMBL:AC007289 IPI:IPI00542066 PIR:F84467
RefSeq:NP_178605.1 UniGene:At.41191 PRIDE:Q9SHT7
EnsemblPlants:AT2G05370.1 GeneID:815085 KEGG:ath:AT2G05370
TAIR:At2g05370 ProtClustDB:CLSN2683119 ArrayExpress:Q9SHT7
Genevestigator:Q9SHT7 Uniprot:Q9SHT7
Length = 211
Score = 286 (105.7 bits), Expect = 7.7e-24, P = 7.7e-24
Identities = 67/138 (48%), Positives = 83/138 (60%)
Query: 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGG-VWRCRLKTSCTPSESYPNFFIENVAEV 64
K V +QV++ GF K +L YLEN+VG VWRCRLKTS TP SYPNF I + + +
Sbjct: 2 KNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNI 61
Query: 65 QKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGT 124
K D YE+V PHAFVH + MDAAE +L L G+ LK SL ENP+ LN
Sbjct: 62 PKFDCYERVVPHAFVHCDAHKSL---MDAAEQSKLILGGQPLKFSLSSENPYTLN----- 113
Query: 125 SAPLKLPDVYVEIGSLVT 142
P KL V +EIG+L +
Sbjct: 114 --PYKLTGVSLEIGTLAS 129
Score = 125 (49.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 52/159 (32%), Positives = 70/159 (44%)
Query: 123 GTSAPLK-LPDVYVE--IGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKF-CFTK---- 174
G S K L D Y+E +G LV + SW S +F + KF C+ +
Sbjct: 15 GESTKTKELTD-YLENKVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNIPKFDCYERVVPH 73
Query: 175 -----DTAFALKSSAEHAVIKC---EFKVFLVREIDIVKQYSELPRVAILLW-LASSPRI 225
D +L +AE + + K L E +L V++ + LASSPR+
Sbjct: 74 AFVHCDAHKSLMDAAEQSKLILGGQPLKFSLSSENPYTLNPYKLTGVSLEIGTLASSPRV 133
Query: 226 CYRTAKDDIEVLVPFXXXXXXXPWIRTTDFSPSGAIGQC 264
YRTA DDI PWIRTTDF+ SGAI +C
Sbjct: 134 WYRTADDDIYETSAVDLLDDNDPWIRTTDFTQSGAIRRC 172
>TAIR|locus:2052020 [details] [associations]
symbol:AT2G19930 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
initiation" evidence=RCA] [GO:0010075 "regulation of meristem
growth" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 EMBL:AK229381
IPI:IPI00786210 PIR:H84582 RefSeq:NP_179583.3 UniGene:At.39772
EnsemblPlants:AT2G19930.1 GeneID:816512 KEGG:ath:AT2G19930
TAIR:At2g19930 HOGENOM:HOG000082682 OMA:LANYMAR
Genevestigator:O82188 Uniprot:O82188
Length = 977
Score = 153 (58.9 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 66/245 (26%), Positives = 108/245 (44%)
Query: 602 IRMSLRGSMKKFKSCHTSLEICSWTRFQPGF--LNRQIITLLSTLNVSDEIFWTVQASMA 659
I++S S+ F S +LE+ + T P L++ ++ LLS + +E F + +
Sbjct: 473 IKVSKDPSLSNF-STFNALEVVT-TSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTL 530
Query: 660 SKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY----ELGELK 715
+ + A AA M+ G P EPHL+ L+ E +LK
Sbjct: 531 EESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGI-PLDEPHLKNYLSILLKTEKNDLK 589
Query: 716 ECQCFIQVSESS-LENCFSKHGSRFAETKKLQV-----INGFVVIAKNPCLRPGDVRILE 769
+ + V+ES L G+ E + + I+G V++ +NP L GD+ IL+
Sbjct: 590 AGK--LPVTESYYLMGTVDPTGA-LKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILK 646
Query: 770 AVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPP 825
A L + FPQKG R +E +G D DGD+Y+++ + L+ K S P
Sbjct: 647 ATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPW 706
Query: 826 MECTP 830
+ TP
Sbjct: 707 VSLTP 711
Score = 108 (43.1 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 857 DRSEYGA-FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
DR+E A + + L + A+D+PK G V +P+ LKP +P +ME ++ ++S
Sbjct: 768 DRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDK--KFQSTS 825
Query: 916 ILGRLYRQIKGAYDENISVSSEVDINP 942
ILG ++ +K E S SSE+ P
Sbjct: 826 ILGLIFDFVKSQTTEEPSPSSEISKLP 852
Score = 53 (23.7 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 502 NWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPT-----EVD--H-------ELPDIKRN 547
++M A +A Y AR L S T T+E+ T ++D H ++ D +
Sbjct: 336 HFMHVHRAPTLANYMARFSLILSKTK-TLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKK 394
Query: 548 GYVFSDGIGKITPDLA 563
+ SDG G I+ DLA
Sbjct: 395 PCIHSDGTGYISEDLA 410
Score = 51 (23.0 bits), Expect = 7.1e-13, Sum P(3) = 7.1e-13
Identities = 27/100 (27%), Positives = 42/100 (42%)
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSN----QLRD 483
NVL+ A + K ++ S + K I +G + RRY F F + +D
Sbjct: 243 NVLTVKFADVQKSSSTYSIDH----YFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKD 298
Query: 484 HSA----WFFSKVGETSVLDIKNWMGEFTAKNIAKYAARM 519
S +F + T+ D++N T K+I Y ARM
Sbjct: 299 LSTKKVKCYFIRTDSTAFYDMQNPY-ILTGKSI--YEARM 335
Score = 39 (18.8 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 262 GQCNSKQRVQEDCLSQP 278
G+C + +QE C P
Sbjct: 420 GKCLRSESIQEACYQDP 436
Score = 37 (18.1 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 471 YSFLAFSSNQ--LRDHSAWFFSKV-GETSVLDIK---------NWMGE--FTAKNIAKYA 516
Y+F S+ Q L +H+ KV G+ +VL +K + + FT K IAK
Sbjct: 215 YTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSSSTYSIDHYFTYKGIAKNG 274
Query: 517 ARMGL 521
+GL
Sbjct: 275 IMIGL 279
>TAIR|locus:2052040 [details] [associations]
symbol:AT2G19910 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00534018
PIR:F84582 RefSeq:NP_179581.2 UniGene:At.52837 PaxDb:O82190
PRIDE:O82190 EnsemblPlants:AT2G19910.1 GeneID:816510
KEGG:ath:AT2G19910 TAIR:At2g19910 eggNOG:NOG279775
InParanoid:O82190 OMA:IFYSERA PhylomeDB:O82190
Genevestigator:O82190 Uniprot:O82190
Length = 992
Score = 143 (55.4 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 57/226 (25%), Positives = 103/226 (45%)
Query: 615 SCHTSLEICSWTRFQP--GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVA 672
S SLE+ + T P L+R ++ LLS V ++ F + + + + + A
Sbjct: 498 STFNSLEVVT-TSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAA 556
Query: 673 FEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCF 732
F+ + + TA ++L G P EP+L+ L+Y L + ++ ++ +
Sbjct: 557 FKA-AINYGDDQYTADMIL-VGI-PLDEPYLKDRLSYLLKTERNA---LKAGRFPIDESY 610
Query: 733 SKHGS--RFAETKKLQV--------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD- 781
G+ E K+ ++ I+G V++ +NP L GD+ +L+A L
Sbjct: 611 YIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGN 670
Query: 782 ---CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+ FPQKG R +E +G D DGD+Y+++ + L+ K S P
Sbjct: 671 AKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEP 716
Score = 93 (37.8 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 29/104 (27%), Positives = 53/104 (50%)
Query: 866 ENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK 925
+N + L + A+D+PK G V +P L+ K +P +ME + + ++S ILG ++ +
Sbjct: 789 KNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVD 848
Query: 926 GAYDENISVSSEVDINPVDIHYDTDLEVPGS-VD-FTADARNQK 967
+++ SE+ + Y D VP S +D FT+ N +
Sbjct: 849 -SHNAEEPPPSEIS----KLWYFEDEPVPKSHMDKFTSWYENYR 887
Score = 56 (24.8 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPT-----EVD----HELPD---IKRNGY--VFSD 553
T ++ Y +R L S T T+E+ T ++D H+ D + +NG + SD
Sbjct: 346 TLSSLPNYMSRFSLILSKTK-TLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSD 404
Query: 554 GIGKITPDLA 563
G G I+ DLA
Sbjct: 405 GTGYISEDLA 414
Score = 41 (19.5 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSN----QLRDHSA----WFFSKVGETSVLDIKN 502
++ K I +G + RRY F F + +D S +F + T+ +D++N
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQN 325
>TAIR|locus:2052030 [details] [associations]
symbol:AT2G19920 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00546115
PIR:G84582 RefSeq:NP_179582.2 UniGene:At.50085 PRIDE:O82189
EnsemblPlants:AT2G19920.1 GeneID:816511 KEGG:ath:AT2G19920
TAIR:At2g19920 eggNOG:NOG266676 InParanoid:O82189 OMA:MSIHEAR
PhylomeDB:O82189 Genevestigator:O82189 Uniprot:O82189
Length = 927
Score = 132 (51.5 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
Identities = 64/235 (27%), Positives = 110/235 (46%)
Query: 615 SCHTSLEICSWTRFQP--GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVA 672
S SLE+ + T P L++ ++ LLS V ++ F + LN + +
Sbjct: 489 STFNSLEVVT-TSNPPKRAKLSKNLVALLSYGGVPNDFFLDIL------LNTLEKKKTIF 541
Query: 673 FEVLTASCA--EQGN----TAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSES 726
F+V A A GN A M+ AG P EP+L+ L+ +L +L++ ++ +
Sbjct: 542 FKVRAAGKAALHYGNMDDKNALQMIMAGI-PLDEPYLKHYLS-KLLKLEKDD--LKAGKL 597
Query: 727 SLENCFSKHGS--RFAETKKLQVINGF-----VVIAKNPCLRPGDVRILEAVDRPELHHL 779
++ + G+ E K+ +V +G V++ +NP L GD+ IL+A L
Sbjct: 598 PIDESYYLMGTVDPTGELKEDEV-SGLAKSQDVLVYRNPGLHFGDIHILKATYVKSLEQY 656
Query: 780 CDC----LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP 830
+ FPQKG R +E +G D DGD+Y+++ + L+ K S P + +P
Sbjct: 657 VGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSP 711
Score = 89 (36.4 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGR 919
E + + L + A+D+PKTG V +P +K +P +ME +T+KS ILG
Sbjct: 772 EKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYME--RNKTFKSTSILGL 829
Query: 920 LY 921
++
Sbjct: 830 IF 831
Score = 53 (23.7 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 502 NWMGEFTAKNIAKYAARMGLCFSSTHAT----VEIPPTEVD----HELPD---IKRNGY- 549
++M T + A Y AR L S T EI ++D H+ + + +NG
Sbjct: 340 HFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKP 399
Query: 550 -VFSDGIGKITPDLA 563
+ SDG G I+ DLA
Sbjct: 400 RIHSDGTGYISEDLA 414
Score = 47 (21.6 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 1007 ERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL 1066
E+ K + +RKE Q MNSD + S NE Y+Q+ +Y +E KK L+ L
Sbjct: 864 EKCKLWHKDYRKEMCQA---MNSDDDDSCNEVIQKYKQE---FYSAAGFKE-SKKILEEL 916
Score = 45 (20.9 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFS----SNQLRDHSA----WFFSKVGETSVLDIKNWM 504
+ + K I +G + RRY F F + + + +S +F + G T+ D++N
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMEN-- 325
Query: 505 GEFTAKNIAKYAARM 519
+ ++ + ARM
Sbjct: 326 -PYILSGMSIHEARM 339
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1117 1096 0.00087 123 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 632 (67 KB)
Total size of DFA: 538 KB (2245 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 88.43u 0.14s 88.57t Elapsed: 00:00:05
Total cpu time: 88.44u 0.14s 88.58t Elapsed: 00:00:05
Start: Tue May 21 03:04:06 2013 End: Tue May 21 03:04:11 2013