BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048783
(1117 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 1203
Score = 1562 bits (4044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/1201 (66%), Positives = 925/1201 (77%), Gaps = 86/1201 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
+ REK +V TQVS GGFD+D+ A DLV YL+NE+G VWRCRLKTS TP ESYPNF I +
Sbjct: 4 KRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDT 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
A +Q+ D Y +VEPHAFVHFA+ T A +AA H ELF NGR +KVSLGPENPF LNQR
Sbjct: 64 AVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P KL DV+VEIG+LV++DEF V WRGP SG DFLVDPFDG CKFCFT+DTAF+ K
Sbjct: 124 RRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFK 183
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ EHAVI+C+FK+ FLVR+I+ +KQY++ + ILL LAS+P + YRTA DDIEVLVPF
Sbjct: 184 GTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPF 243
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPV 279
DLLDDDDPWIRTTDF+PSGAIG+CNS ++RVQEDCL +P+
Sbjct: 244 DLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPL 303
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
+ EP++E+P+ DPFFC+H++EGV F +MFLVNAVMHKGI NQHQLSDSFFDLLR QP
Sbjct: 304 HVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPL 363
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKA 399
+V + AL+HI SYK PVFDA+++LK VQ+ L+KNPKL K +DDI E+RRL ITPT+A
Sbjct: 364 DVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRA 423
Query: 400 YW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y KD+AD+FLRVTFMDEGLQTMNAN L+YY APIV+DITSNSFSQ
Sbjct: 424 YCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQ 483
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
KT +FKRVKSIL+DGF LCGR+YSFLAFSSNQLRD SAWFF++ G+TSV I+NWMG+FT
Sbjct: 484 KTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFT 543
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
+NIAK AARMG CFSST+ATVE+P E +LPDI+RN Y+FSDGIG ITPDLA EVA+
Sbjct: 544 NRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAE 603
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
LKL+ + PP AYQIRYAG KGVVACWPA DGIR+SLR SM KF S HT+LEICSWTRF
Sbjct: 604 KLKLEVN-PPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRF 662
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
QPGFLNRQIITLLSTL+V DEIFW +Q M SKLN M + +DVAF+V+TASCAEQGNTAA
Sbjct: 663 QPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAA 722
Query: 689 IMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
IMLSAGF P+TEPHL GMLT ELG L+ QCF
Sbjct: 723 IMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCF 782
Query: 721 IQVSESSLENCFSKHGSRFAET-KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
IQVS SLE+CF KHGSRF+E+ KKLQV+ G VV+AKNPCL PGD+RILEAVD PELHHL
Sbjct: 783 IQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHL 842
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DCLVFPQKGDRPHTNEASGSDLDGDLY+VTWDENLIPPSK+S PM+ AEAK L
Sbjct: 843 HDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRP 902
Query: 840 VNHQ-------------NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
VNHQ NLG ICNAHVVHAD SEYGA DENCI LA+LAATAVD PKTGK
Sbjct: 903 VNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGK 962
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENI------SVSSEVDI 940
+VTMP HLKPK YPDFM E+YQ+Y SNKILGRLYRQ+K Y+++ + SSE+++
Sbjct: 963 LVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNL 1022
Query: 941 NPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKY 997
DI YD DLEV GS D+ DA +QKCSYDGQL GLL QY V R+E HIWSMPK
Sbjct: 1023 VRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKC 1082
Query: 998 NSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHR 1056
NSRKQGEL+ERLK SY + +KEFRQVFEKM+SDFE L+++EKN+LYEQKASAWYQV YH
Sbjct: 1083 NSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHP 1142
Query: 1057 EWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADR 1116
+WV KS++L E +A +LSFAWIA DYLARIKI+C+ + SKPVN+L +Y+ADR
Sbjct: 1143 KWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADR 1202
Query: 1117 I 1117
I
Sbjct: 1203 I 1203
>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1200
Score = 1554 bits (4023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 784/1198 (65%), Positives = 931/1198 (77%), Gaps = 83/1198 (6%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E K +V TQVSVGGFD + A DL++YL+ +G VWRCRLKTS TP ESYPNF I ++
Sbjct: 4 EGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDI 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
++++T+DY +V PHAFVHFA T AM+A+ ELFLN +ALKVSLGP+NPF LNQR
Sbjct: 64 TKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P KL DV EIG+LV++DEFFV WRGP SG DFLVDPFDGTCKFCF+++TAF+LK
Sbjct: 124 RRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLK 183
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
S++EHAVIKC+FKV FLVR+I+ + QY+E + +LL LAS+P + YRTA DDIE VPF
Sbjct: 184 STSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPF 243
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS--------------------KQR----VQEDCLS 276
DLLDDDDPWIRTTDF+ SGAIG+C+S K+R +QE+
Sbjct: 244 DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHR 303
Query: 277 QPVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRC 336
+ + I +EPDF +P+ DPFFC+H+KEG++FE++FLVNAVMHKGI NQHQLS+ FFDLLR
Sbjct: 304 RRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 363
Query: 337 QPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITP 396
Q EV V+ALKHI +Y+RPVF+AY +LK VQE L+KNP L + PK + D+ E+RRLVITP
Sbjct: 364 QHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITP 423
Query: 397 TKAYWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNS 445
TKAY + KDVADRFLRVTFMDEGLQ MN+NVL+YYVAPIV+DITSNS
Sbjct: 424 TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNS 483
Query: 446 FSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMG 505
F QKT +FKRV+SIL++GF LCGRRYSFLAFS+NQLRD SAWFFS+ SVLD+K+WMG
Sbjct: 484 FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMG 543
Query: 506 EFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAME 565
+FT +NIAK AARMG CFSST+AT+E+PP EV+ +LPDI+RNGYVFSDGIG ITPDLA E
Sbjct: 544 KFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLARE 603
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW 625
VA+ LKLD PP AYQIRYAG KGVVACWP K DG+R+SLR SM KF+S HT+LEICSW
Sbjct: 604 VAEKLKLDID-PPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSW 662
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN 685
TRFQPGFLNRQIITLLSTLNV D +FW +Q +M SKLN M V SDVAF+VLTASCA+QGN
Sbjct: 663 TRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGN 722
Query: 686 TAAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKEC 717
AAIMLSAGFKP EPHL+GMLT ELG L++
Sbjct: 723 VAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQG 782
Query: 718 QCFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
QCFIQVS SSLE CF KHG++F+E +K LQVI G VVIAKNPCL PGDVR+LEAVD P L
Sbjct: 783 QCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGL 842
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
HHL DCLVFPQKG+RPHTNEASGSDLDGDLY+VTWDENLIPPSK+S PM+ AEAK L
Sbjct: 843 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLL 902
Query: 837 TCHVNHQ-------------NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
VNHQ NLG ICNAHVVHAD SEYGA D+NC+ LA+LAATAVD PK
Sbjct: 903 ARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPK 962
Query: 884 TGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
TGK+V+MP +LKPK YPDFM EEYQ+YKS KILGRLYRQIK AYDE+++ SSE+++ P
Sbjct: 963 TGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPG 1022
Query: 944 DIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSR 1000
DI YD+DLEV G+ D+ +DA +QKCSYDGQLNGLL QY V R+E HIWSMPKY+SR
Sbjct: 1023 DIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSR 1082
Query: 1001 KQGELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWV 1059
KQGEL++RLKHSY++ +KEFRQ+FEKM+ +FE L D EKN LYEQKASAWYQV YH WV
Sbjct: 1083 KQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWV 1142
Query: 1060 KKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
KKSL+L + A + V+LSFAWIA DYLARIKI+ +E N+ +KPVN+LA+Y+ADR+
Sbjct: 1143 KKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200
>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1198
Score = 1537 bits (3980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1196 (65%), Positives = 922/1196 (77%), Gaps = 81/1196 (6%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E K +V TQVS+GGFD + A DL++YLE E+G VWRCRLKTS TP ESYPNF I ++
Sbjct: 4 EGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDI 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
++ +T+DY +VEPHAFVHFA T A+DAA+ ELFLN + LK SLGPENPF LNQR
Sbjct: 64 TKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
+ P KL V VEIG+LV++DEFFV WRGP +G DFLVDPFDGTC+FCF+++TAF+ K
Sbjct: 124 RRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFK 183
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
S+AEHAVIKC+FKV FLVR+I+ +KQY+E + +LL LAS+PR+ YRTA DDIEV VPF
Sbjct: 184 STAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPF 243
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPV 279
DLLDDDDPWIRTTDF+ SGAIG+C+S ++RVQE+ L +P+
Sbjct: 244 DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPI 303
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
IR+EPDF +P+ DPFFC+H+KEG++F+++FLVNAVMHKGI NQHQLS+ FFDLLR QP
Sbjct: 304 RIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPT 363
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKA 399
EV V ALKHIY Y+RPVFDAY+KLK QE L+KNPK + K +DDIAE+RRLVITPTKA
Sbjct: 364 EVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKA 423
Query: 400 YW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y + KDVADRFLRVTFMDEGLQTMN+N L+Y+ APIV+ ITS SF Q
Sbjct: 424 YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQ 483
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
KT +FKRV+SIL++GF LCGRRYSFLAFSSNQLRD SAWFF++ +V+ IK+WMG+FT
Sbjct: 484 KTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFT 543
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
KNIAK AARMG CFSST+AT+E+PP EV+ +LPDIKRNGY FSDGIG ITPDLA EVA+
Sbjct: 544 NKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAE 603
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
LK D PP AYQIRYAG KGVVACWP + DGIR+SLR SM KF+S HT LEICSWTRF
Sbjct: 604 KLKFDFD-PPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRF 662
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
QPGFLNRQIITLLS LNV D +FW +Q M SKLN MLV SDVAF+VLTASCAEQGN AA
Sbjct: 663 QPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAA 722
Query: 689 IMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
IMLSAGFKPQ EPHL+GMLT ELG L++ QCF
Sbjct: 723 IMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCF 782
Query: 721 IQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
IQVS S LENCF KHGS+F+ETKK LQV+ G VVIAKNPCL PGD+RILEAVD P LHHL
Sbjct: 783 IQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHL 842
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DCLVFPQKG+RPH NEASGSDLDGDLY+VTWDENLIPPSK+S PM+ AEAK LT
Sbjct: 843 YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRP 902
Query: 840 VNHQ-------------NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
VNHQ NLG ICNAHVV AD SEYGA DE C+ LA+LAATAVD PKTGK
Sbjct: 903 VNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGK 962
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK-GAYDENISVSSEVDINPVDI 945
IV+MPS LKPK YPDFM EE+Q+YKS KILGRLYRQIK D++++ SSE++ DI
Sbjct: 963 IVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDI 1022
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQ 1002
YD DLEV G+ DF +DA ++KCSYDGQLNGLL QY V R+E H+WSMPK +SRKQ
Sbjct: 1023 PYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQ 1082
Query: 1003 GELQERLKHSYSAFRKEFRQVFEKMNSDF-ELSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
G+L+ERLKHSY+ ++EFRQVFEKM+ DF +L D+EKN+LYE+KASAWYQVTYH W++K
Sbjct: 1083 GDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQK 1142
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
SL+L + A V+LSFAWIA DYLARIKI+ + N+ +KPVN+LA+Y+ADR+
Sbjct: 1143 SLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198
>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
Length = 1196
Score = 1498 bits (3877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 763/1191 (64%), Positives = 894/1191 (75%), Gaps = 81/1191 (6%)
Query: 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQ 65
K +V TQVSVGGFDR +KA DL+KYLENEVG VWRCRLKTS TP ESYPNF I + +Q
Sbjct: 8 KETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQ 67
Query: 66 KTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTS 125
+ D+Y+KVEPHAFVHFA+ +T A+DAA EL N + LKVSLGPENP+ LN+R +
Sbjct: 68 RKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDT 127
Query: 126 APLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAE 185
P KLPDV +EIG+L + DEF V WRGP SG +FLVDPFD TCKFCF++DTAF+ K + E
Sbjct: 128 TPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNE 187
Query: 186 HAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLD 244
HAVIKC+FKV FLVREI+ VKQYSE +LL LASSP + YRTA DD E VPF LLD
Sbjct: 188 HAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLD 247
Query: 245 DDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPVTIRE 283
DDD WIRTTDF+ SGAIG+CN+ ++RV + L + IR+
Sbjct: 248 DDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRD 307
Query: 284 EPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIV 343
EPDF + D F+ + YKEG+ FEIMFLVNAV+HKGI NQHQLS FF LLR Q EV V
Sbjct: 308 EPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNV 366
Query: 344 TALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFL 403
ALKHIYSY+ PV+DAYE+LKDV + L+KNPKL + P +DDI E+RRLVITPTKAY L
Sbjct: 367 AALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLL 426
Query: 404 -----------ESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+ KDVADRFLRVTFMDEG+Q MNANVL+YY A IV+D+TS SFSQKTGV
Sbjct: 427 PEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGV 486
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI 512
FKRVKSIL+DGF LCGR+YSFLAFS+NQLRD +AWFF++ G+ +VL I WMG+FT +NI
Sbjct: 487 FKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNI 546
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL 572
AK AARMG CFSST+ATVE+P +V+ LPDIKRNGY FSDGIGKITPDLAMEVAQ LKL
Sbjct: 547 AKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKL 606
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGF 632
D + PP AYQIRYAG KGVVACWP + D IR+SLR SM KF S HT+LEICSWTRFQPGF
Sbjct: 607 DLN-PPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGF 665
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
LNRQIITLLSTL V DE+FW +Q SM SKL+ +LV +D AFEV+ +SC EQG+T AIMLS
Sbjct: 666 LNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLS 725
Query: 693 AGFKPQTEPHLQGMLTY----------------------------ELGELKECQCFIQVS 724
AGFKPQTEPHL+GMLT ELG L++ QCFIQVS
Sbjct: 726 AGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVS 785
Query: 725 ESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCL 783
SL+NCF KHGSRFAETKK +VI G VVIAKNPCL PGD+RILEAVD P LHHL DCL
Sbjct: 786 NPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 845
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNH- 842
VFPQKG+RPHTNEASGSDLDGDLY+VTW+E LIPPSKKS PM+ + L V H
Sbjct: 846 VFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHK 905
Query: 843 ------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
++LG ICNAHVVH+D SE+GA DE CI LA+LAA AVD PKTGKIV+M
Sbjct: 906 DIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSM 965
Query: 891 PSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTD 950
P+ LKPK YPDFM EE+Q+YKSNKILGRLYR IK AYD+++S SSE++ DI+YD D
Sbjct: 966 PAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDAD 1025
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQE 1007
LE+ GS D+ DA +KCSYDGQL GLL QY V R+E IWSMPKY S+K G+L+E
Sbjct: 1026 LEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKE 1085
Query: 1008 RLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL 1066
+L HSY + RKEFRQ+FE M+S+FE L+++EKN LYE+KASAWYQVTYH EWV+K L+
Sbjct: 1086 KLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQ 1145
Query: 1067 EQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+ VV+LSFAWIA DYLARIK++ Q N+ +KPVN+L RY+ADRI
Sbjct: 1146 KPDGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196
>gi|225430281|ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 1497 bits (3876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1197 (64%), Positives = 903/1197 (75%), Gaps = 84/1197 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E EK V TQ+S+GGFD+ + A +L YLE+ +G V RCRLKTS TP ESYP+F I +
Sbjct: 4 EGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDT 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
A++++T+DY+KVEPHAFVHF + T A+DAA ELFL+G+ LKVSLGPE PF LNQR
Sbjct: 64 AKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P K PDV +EIG LV++DE+F WRGP+SG DFLVDPFDGTCKF FTKDTAF+ K
Sbjct: 124 RRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFK 183
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+HAVIKC FKV FLVREI+ V+Q ++ + +LL L+SSP + YRTA DDIE VPF
Sbjct: 184 GMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPF 243
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS-----------------------KQRVQEDCLSQ 277
DLLDDDDPWIRTTDF+ SGAIG+CNS + V ED
Sbjct: 244 DLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKW 303
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ +R+EPDF +P+ DPFFC+ +KEG+ F +MFLVNAVMHKGI+NQHQLSD FFDLLR Q
Sbjct: 304 QLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQ 363
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
+++ + ALKHI SY+ PVFDAY++LK V + L+KNPKL + PK +DDI EVRRLVITP+
Sbjct: 364 QKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPS 423
Query: 398 KAYWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY K+V+DRFLRVTFMDEG+QT+NANVL+YYVAPIVK ITSNSF
Sbjct: 424 KAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSF 483
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
QKT VFKRVK+IL+DGF LCGR+YSFLAFSSNQLRD SAWFF++ +TSV IK+WMG+
Sbjct: 484 PQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGK 543
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
FT +N+AK AARMG CFSST+ATVE+P EV ELPDIKRNGY FSDGIGKI PDLAMEV
Sbjct: 544 FTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIVPDLAMEV 602
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A+ LKL+G+P SAYQIRYAG KGVVACWP+ +DGIR+S R SM KF S HT LEICSWT
Sbjct: 603 AEKLKLEGTP--SAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
RFQPGFLNRQI+TLLS LNV D+IFW +Q SM SKLN ML +DVAF+VL ASCAEQGNT
Sbjct: 661 RFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNT 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AAIMLSAGFKPQTEPHLQGMLT ELG L++ Q
Sbjct: 721 AAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
CFIQVS SLENCF KHGSRF+ K L+VI G V IAKNPCL PGDVRILEAVD P L H
Sbjct: 781 CFIQVSSPSLENCFLKHGSRFSAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEH 840
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
L DCLVFPQKGDRPH+NEASGSDLDGDLY+VTW+E LIPPSK+S PPM+ AEAK L
Sbjct: 841 LVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAR 900
Query: 839 HVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
V ++NLG ICNAHVVHADRSEYGA DE C+ LA+ AATAVD PKTG
Sbjct: 901 EVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTG 960
Query: 886 KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
K+VT+P +LKPK YPDFM EE+QTY+SNKILG++YRQIK AY+E++S SSE +
Sbjct: 961 KLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKV 1020
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQ 1002
+D DL +PGS DF DA KCSYDGQLNGLLGQY V R+E H+WSMPKY SRKQ
Sbjct: 1021 PFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQ 1080
Query: 1003 GELQERLKHSYSAFRKEFRQVFEKMNSDF-ELSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
GEL ERLKH+YS+ +KEFRQ+FEKMNSDF +L+D+EKN LYEQKASAWYQVTYH WVKK
Sbjct: 1081 GELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKK 1140
Query: 1062 SLDLLEQGSA-RSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
SL+L V+LSFAWI DYLARIKI+ + N+ SKP+N+LAR++ DRI
Sbjct: 1141 SLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197
>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 1456 bits (3769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1205 (61%), Positives = 900/1205 (74%), Gaps = 93/1205 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E EK SV TQ+S+GGF ++KA DL+ YLE+++G V+RCRLKTS TP ESYP F I +
Sbjct: 4 EGSEKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKIIDT 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
A++++T+DY+KVEPHAFVHFA+ +T A++A+ +LFL + LKVS GP+NP+ LNQR
Sbjct: 64 AKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P K+ DV VEIG+LV+ EFFVSWRGP G FLVDPFDG C+FCF++DTAF+ K
Sbjct: 124 RRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFK 183
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ AVIKC+F+V FLVR+I+ +++Y++ + +LL LASSP + YRTA DDIE VPF
Sbjct: 184 GIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPF 243
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCN-----------------------SKQRVQEDCLSQ 277
DLLDDDDPWIRTTDF+PSGAIG+CN + ++QE L Q
Sbjct: 244 DLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQ 303
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ + EPDF +P+ D FF +H+++ ++F+IMFLVNA++HKGI NQH+LSD FF+LLR Q
Sbjct: 304 TLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQ 363
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
P+E+ V ALKH+ SYKRPVFDA ++LK VQE L++NPKL + K +DDI EVRRLV+TP+
Sbjct: 364 PKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVVTPS 423
Query: 398 KAYW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY + ++V+D FLRVTFMDEG+QT+N N L+YYVAPIVK+ITSNSF
Sbjct: 424 KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSF 483
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
SQKT ++KRVK+IL +GF CGR+YSFLAFSSNQLRD SAWFF++ + DI+NWMG+
Sbjct: 484 SQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-DKIRCDDIRNWMGK 542
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
F +N+AK AARMG CFSST+ATVE+ EV+ LPD++RN Y+FSDGIG IT DLA EV
Sbjct: 543 FNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAREV 602
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A+ LKLD PSAYQIRYAG+KGVVA WPAK DG+R+SLR SM KF+S H LEIC+WT
Sbjct: 603 AEKLKLDNV--PSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
RFQPGFLNRQIITLLS L V DEIFW +Q +M KLN MLV +D+AF+VLT SCAE GN
Sbjct: 661 RFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNA 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AAIMLS GF P TEPHL+GMLT ELG L++ Q
Sbjct: 721 AAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
CF+QVS SLENCFSKHGSRF+ETK L V+ GFVVIAKNPCL PGDVR+LEAVD P+LHH
Sbjct: 781 CFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHH 840
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
L DCLVFPQKGDRPHTNEASGSDLDGDLY+VTWDENLIPPSK+S PME P E+K LT
Sbjct: 841 LNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLTR 900
Query: 839 HVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
V +++LG ICNAHVVHAD S+YGA DE CI LA+LAATAVD PKTG
Sbjct: 901 QVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTG 960
Query: 886 KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
K+VTMP HLKPK YPDFM E +Q+Y+SNKILGRLYR IK AYDE+I + ++ DI
Sbjct: 961 KLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDIE-APYLNFVTGDI 1019
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQ 1002
YD DLEVPGS DF ADA QKCSYDGQL+GL+GQY V R+E IWSMPKYNSRKQ
Sbjct: 1020 PYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYNSRKQ 1079
Query: 1003 GELQERLKHSYSAFRKEFRQVFEKMNSDF-ELSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
GEL+ERLKHSYSA +KEFR FEK+NSD ELS+ EKN+LYEQKASAWYQVTYH EWVKK
Sbjct: 1080 GELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPEWVKK 1139
Query: 1062 SLDLLEQGSAR-------SVVLLSFAWIANDYLARIKI--KCQEMANIGKSKPVNNLARY 1112
SLDL ++ S S V+LSF WIA DYLAR KI + Q N +KPV+ LA+Y
Sbjct: 1140 SLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRSGNFDSTKPVDYLAKY 1199
Query: 1113 VADRI 1117
+++R+
Sbjct: 1200 LSERL 1204
>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 1452 bits (3758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/1205 (61%), Positives = 895/1205 (74%), Gaps = 93/1205 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E EK SV TQ+S+GGF ++KA DLV YLE+++G V+RCRLKTS TP ESYP F I +
Sbjct: 4 EGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDT 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
A +++TD+Y+KVEPHAFVHFA+ +T A++A+ +LFL + LKVS GPENP+ LNQR
Sbjct: 64 ANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P K+ DV VEIG+LV+ EFFVSWRGP G FLVDPFDG C+FCF++DTAF+ K
Sbjct: 124 RRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFK 183
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ AVIKC+F+V FLVR+I+ +K+Y++ + +LL LASSP + YRTA DDIE VPF
Sbjct: 184 GIEKKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPF 243
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCN---------------------SKQRV--QEDCLSQ 277
DLLDDDDPWIRTTDF+PSGAIG+CN QRV QE L Q
Sbjct: 244 DLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQ 303
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ EPDF VP+ D FF +H+++ ++F+IMFLVNA++HKGI NQH+LSD FF+LL+ Q
Sbjct: 304 TLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQ 363
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
P+E+ V ALKH+ SYKRPVFDA ++LK VQE L++NPKL + K +DDI EVRRLVITP+
Sbjct: 364 PKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVITPS 423
Query: 398 KAYW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY + ++V+D FLRVTFMDEG+QT+N N L+YYVAPIVK+ITSNSF
Sbjct: 424 KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSF 483
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
SQ+T ++KRVK+IL GF CGR+YSFLAFSSNQLRD SAWFF++ + DI+NWMG+
Sbjct: 484 SQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-DKIRCDDIRNWMGK 542
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
F +N+AK AARMG CFSST+ATVE+ EV+ LPD++RN Y+FSDGIG IT DLA EV
Sbjct: 543 FNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAREV 602
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A+ LKLD PSAYQIRYAG+KGVVA WPAK DG+R+SLR SM KF+S H LEIC+WT
Sbjct: 603 AEKLKLDNV--PSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
RFQPGFLNRQIITLLS L V DE+FW +Q +M KLN MLV +D+AF+VLT SCAE GN
Sbjct: 661 RFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNA 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AAIMLS GF P TEPHL+GMLT E G L++ Q
Sbjct: 721 AAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
CF+QVS SLENCFSKHGSRF+ETK L V+ GFV+IAKNPCL PGDVR+LEAVD P+LHH
Sbjct: 781 CFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHH 840
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
L DCLVFPQKGDRPHTNEASGSDLDGDLY+VTWDENLIPPSK+S PME P E+K T
Sbjct: 841 LNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLKTR 900
Query: 839 HVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
V +++LG ICNAHVVHAD S+YGA DE CI LA+LAATAVD PKTG
Sbjct: 901 QVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTG 960
Query: 886 KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
K+VTMP HLKPK YPDFM E +Q+Y+S KILGRLYR+IK AYDE+I + ++ DI
Sbjct: 961 KLVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDEDID-APYLNFVTGDI 1019
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQ 1002
YD DLEVPGS DF ADA QKCSYDGQL+GLLGQY V R+E IWSMPKYNSRKQ
Sbjct: 1020 PYDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQ 1079
Query: 1003 GELQERLKHSYSAFRKEFRQVFEKMNSDF-ELSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
GEL+ERLKHSYSA +KEFR FEK+NSD ELS+ EKN+ YEQKASAWYQVTYH EWVKK
Sbjct: 1080 GELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKK 1139
Query: 1062 SLDLLEQGSAR-------SVVLLSFAWIANDYLARIKI--KCQEMANIGKSKPVNNLARY 1112
SLDL ++ S S V+LSF WIA DYLAR KI + Q N +KPV++LA+Y
Sbjct: 1140 SLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDSTKPVDSLAKY 1199
Query: 1113 VADRI 1117
+++R+
Sbjct: 1200 LSERL 1204
>gi|449499234|ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 1447 bits (3747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1196 (61%), Positives = 891/1196 (74%), Gaps = 82/1196 (6%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
EE EK V TQVS GGFD D+KA DL+ YLE+E+G V RCRLKTS TP ESYP+F + NV
Sbjct: 4 EEGEKIVV-TQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNV 62
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
A V K+DDY+KV PHAFVHF + A+ AA EL N + LK SLGPE+PF +NQR
Sbjct: 63 ANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQR 122
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T P KL DV V+IG+L D F V+WRGP+SG DFLVDPFDGTCKFCFTKDTAF+ K
Sbjct: 123 RRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFK 182
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ +H +KC++K+ F+VR+I+ + +Y++ ILL L SSP I YRTA DDI LVP+
Sbjct: 183 DNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAKLVPY 242
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPV 279
DLLDDDDPWIRTTDF+ SGAIG+CN+ +QRV + L++P
Sbjct: 243 DLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPP 302
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
I EPD+ V + D FFC+ YK+ +SFEI+FLVNAVMHKGI+NQHQ+SD FFDLLR QP
Sbjct: 303 KILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPN 362
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKA 399
EV + AL HI++++RPV DA +KLK VQE L+KNP L + K + DI E+RRLVITP+KA
Sbjct: 363 EVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKA 422
Query: 400 YWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y F KDVADRFLRVTFMDEG++ +N++V +YYVAPIVK+ITS+SF Q
Sbjct: 423 YCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQ 482
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
KT +F R+K IL GF+LCGR+YSFLA+SSNQLRD SAWFF++ SV I WMG+FT
Sbjct: 483 KTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGKFT 542
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
KN+AK AAR+G CFSST+AT+E+P V+H+L D++RNGYVFSDGIG ITPDLA EVA
Sbjct: 543 NKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVAD 602
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
LK+DGS PP AYQIRYAGYKGVVA WP+K DGIR++LR SM KF+S H LEICSWTRF
Sbjct: 603 KLKMDGS-PPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSWTRF 661
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
QPGFLNRQIITLLSTL+V DEIFW++Q +M SKL+ M+ +DVAFEVLTASCAEQGN AA
Sbjct: 662 QPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAAA 721
Query: 689 IMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
IMLSAGF+P+TEPHL+GML E G L+E QCF
Sbjct: 722 IMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCF 781
Query: 721 IQVSESSLENCFSKHGSRFAETK-KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
IQVS LE CFSKHGS FAETK L V+ G VVIAKNPCL PGDVRILEAVD PELHHL
Sbjct: 782 IQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHL 841
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DCLVFP+ G+RPHTNEASGSDLDGDLY+ TWD NLIPPSKKS PPME PAE K L
Sbjct: 842 YDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRK 901
Query: 840 VN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
+ +++LG ICNAHVVHADRS++GA DENCI L++LAATAVD PKTGK
Sbjct: 902 ITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTGK 961
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSS-EVDINPVDI 945
+VTMP HLKPK YPDFM E Q+YKS KILG++YR+I+ AYD++ ++S E++ P D+
Sbjct: 962 LVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDV 1021
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQ 1002
HYD DLEV G+ DF A+A +QKCSYDGQL+GLLGQY VNR+E HIWSMPKY SRKQ
Sbjct: 1022 HYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQ 1081
Query: 1003 GELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
GEL+E+LKHSYS +K+FRQVFE + +FE L+ +E+N LYE+KASAWYQV YH W+KK
Sbjct: 1082 GELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKK 1141
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
SL+L E + +V +LSF WIA DYLARIKIKC+ + +KP+N+LA Y++DR+
Sbjct: 1142 SLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197
>gi|449441914|ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus]
Length = 1197
Score = 1446 bits (3743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 738/1196 (61%), Positives = 891/1196 (74%), Gaps = 82/1196 (6%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
EE EK V TQVS GGFD D+KA DL+ YLE+E+G V RCRLKTS TP ESYP+F + NV
Sbjct: 4 EEGEKIVV-TQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNV 62
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
A V K+DDY+KV PHAFVHF + A+ AA EL N + LK SLGPE+PF +NQR
Sbjct: 63 ANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQR 122
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T P KL DV V+IG+L D F V+WRGP+SG DFLVDPFDGTCKFCFTKDTAF+ K
Sbjct: 123 RRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFK 182
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ +H +KC++K+ F+VR+I+ + +Y++ ILL L +SP I YRTA DDI LVP+
Sbjct: 183 DNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKLVPY 242
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPV 279
DLLDDDDPWIRTTDF+ SGAIG+CN+ +QRV + L++P
Sbjct: 243 DLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPP 302
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
I EPD+ V + D FFC+ YK+ +SFEI+FLVNAVMHKGI+NQHQ+SD FFDLLR QP
Sbjct: 303 KILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPN 362
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKA 399
EV + AL HI++++RPV DA +KLK VQE L+KNP L + K + DI E+RRLVITP+KA
Sbjct: 363 EVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKA 422
Query: 400 YWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y F KDVADRFLRVTFMDEG++ +N++V +YYVAPIVK+ITS+SF Q
Sbjct: 423 YCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQ 482
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
KT +F R+K IL GF+LCGR+YSFLA+SSNQLRD SAWFF++ SV I WMG+FT
Sbjct: 483 KTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGKFT 542
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
KN+AK AAR+G CFSST+AT+E+P V+H+L D++RNGYVFSDGIG ITPDLA EVA
Sbjct: 543 NKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVAD 602
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
LK+DGS PP AYQIRYAGYKGVVA WP+K DGIR++LR SM KF+S H LEICSWTRF
Sbjct: 603 KLKMDGS-PPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSWTRF 661
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
QPGFLNRQIITLLSTL+V DEIFW++Q +M SKL+ M+ +DVAFEVLTASCAEQGN AA
Sbjct: 662 QPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAAA 721
Query: 689 IMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
IMLSAGF+P+TEPHL+GML E G L+E QCF
Sbjct: 722 IMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCF 781
Query: 721 IQVSESSLENCFSKHGSRFAETK-KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
IQVS LE CFSKHGS FAETK L V+ G VVIAKNPCL PGDVRILEAVD PELHHL
Sbjct: 782 IQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHL 841
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DCLVFP+ G+RPHTNEASGSDLDGDLY+ TWD NLIPPSKKS PPME PAE K L
Sbjct: 842 YDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRK 901
Query: 840 VN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
+ +++LG ICNAHVVHADRS++GA DENCI L++LAATAVD PKTGK
Sbjct: 902 ITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTGK 961
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSS-EVDINPVDI 945
+VTMP HLKPK YPDFM E Q+YKS KILG++YR+I+ AYD++ ++S E++ P D+
Sbjct: 962 LVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDV 1021
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQ 1002
HYD DLEV G+ DF A+A +QKCSYDGQL+GLLGQY VNR+E HIWSMPKY SRKQ
Sbjct: 1022 HYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQ 1081
Query: 1003 GELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
GEL+E+LKHSYS +K+FRQVFE + +FE L+ +E+N LYE+KASAWYQV YH W+KK
Sbjct: 1082 GELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKK 1141
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
SL+L E + +V +LSF WIA DYLARIKIKC+ + +KP+N+LA Y++DR+
Sbjct: 1142 SLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197
>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 1437 bits (3721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/1192 (62%), Positives = 888/1192 (74%), Gaps = 82/1192 (6%)
Query: 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQ 65
K SV TQVS+GGF A L YLE+E+G VWRCRLKTS TP SYPNF I + + +
Sbjct: 8 KNSVVTQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEIADTSSIP 67
Query: 66 KTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTS 125
K DDY+KVEPHAFVHFA RAMDAA L L+G+ LKVSLGP+NP+ LNQR T+
Sbjct: 68 KFDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTLNQRRRTT 127
Query: 126 APLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAE 185
P KL + +EIG+LV++DEF VSWR A G DFLVDPFD TCKFCF K TAF+ K +
Sbjct: 128 TPYKLAGISLEIGTLVSRDEFLVSWR--ADGVDFLVDPFDNTCKFCFRKSTAFSFKDAVM 185
Query: 186 HAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLD 244
HAVI C++K+ LVR+I V+QY ++L LASSPR+ YRTA DDI +P DLLD
Sbjct: 186 HAVINCDYKLELLVRDIQTVRQYKNSHGYVLILQLASSPRVWYRTADDDIHDTIPVDLLD 245
Query: 245 DDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPVTIRE 283
DDDPWIRTTDF+ GAIG+C+S +RVQE+ + P IR
Sbjct: 246 DDDPWIRTTDFTQVGAIGRCHSYRVLISPRYEKKLTTALEYLRMRRVQEERVRWPPRIRN 305
Query: 284 EPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIV 343
EP F PV D FFC+H+KEG+SFEIMFLVN+V+H+G+ NQ QL++ FFDLLR QP++V +
Sbjct: 306 EPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNI 365
Query: 344 TALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF- 402
+LKH+ +YKRPVFDAY++LK VQE ++KNPKL G + +DI+E+RRLVITPT+AY
Sbjct: 366 ASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEIRRLVITPTRAYCLP 425
Query: 403 ----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+ + VA+RFLRVTFMDE +QT+N+NVLSY+VAPIVKD+TS+SFSQKT V
Sbjct: 426 PEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYV 485
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI 512
FKRVKSIL+DGF LCGR+YSFLAFS+NQLRD SAWFF++ G+T V DIK WMG+F KN+
Sbjct: 486 FKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSDIKAWMGKFKDKNV 545
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL 572
AK AARMGLCFSST+ATV++ P EV+ ELPDI+RNGYVFSDGIG ITPDLA EV + LKL
Sbjct: 546 AKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNGYVFSDGIGTITPDLADEVMEKLKL 605
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGF 632
D P AYQIRYAG+KGVVA WP+K DGIR++LR SMKKF S HT LEICSWTRFQPGF
Sbjct: 606 DLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSKHTILEICSWTRFQPGF 665
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
LNRQIITLLS L V DEIFW +Q SM KLN +L +DVAFEVLTASCAEQGNTAAIMLS
Sbjct: 666 LNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAAIMLS 725
Query: 693 AGFKPQTEPHLQGMLTY----------------------------ELGELKECQCFIQVS 724
AGFKP+TEPHL+GML+ E G+L+ QCFIQVS
Sbjct: 726 AGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGKLEHGQCFIQVS 785
Query: 725 ESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCL 783
+ S+ENCFSKHGSRF ETK L+V+ G+V IAKNPCL PGDVRILEAVD P+LHH+ DCL
Sbjct: 786 KPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCL 845
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ 843
+FP+KGDRPHTNEASGSDLDGDLY+V WD+ LIPP++KS P M AE K L VNHQ
Sbjct: 846 IFPKKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKTLGRAVNHQ 905
Query: 844 N-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
+ LG ICNAHVVHADRSEYGA DE C+LLA+LAATAVDSPKTGKIV+M
Sbjct: 906 DIIDFFARNMANEHLGTICNAHVVHADRSEYGAMDEECVLLAELAATAVDSPKTGKIVSM 965
Query: 891 PSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTD 950
P HLKPK YPDFM E+YQTYKS+KILGRLYR++K YDE+ SSE +P DI YD D
Sbjct: 966 PFHLKPKLYPDFMGKEDYQTYKSSKILGRLYRRVKEVYDEDAEASSEESSDPSDIPYDID 1025
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQE 1007
LE+PG D +A KCSYD QL GLLGQY V ++E HIWSMPKY S+KQ +L+E
Sbjct: 1026 LEIPGFEDLIPEAWGHKCSYDRQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQCDLKE 1085
Query: 1008 RLKHSYSAFRKEFRQVFEKMNSDF-ELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL 1066
RLKHSY++ +KEFR+VFE+ D ELS+ EKN+LYE+KASAWY VTYH +WVKKSL+L
Sbjct: 1086 RLKHSYNSLKKEFRKVFEETILDHEELSEEEKNILYEKKASAWYHVTYHPKWVKKSLELQ 1145
Query: 1067 EQGSARS-VVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+ S V+LSFAWIA DYLA+IKI+ EM NI +KPV++LA+++A R+
Sbjct: 1146 DPDEPSSHAVMLSFAWIAADYLAKIKIRSGEMGNIDSAKPVDSLAKFLAQRL 1197
>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6; AltName:
Full=Protein SILENCING DEFECTIVE 1; AltName: Full=Protein
SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana]
gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
Length = 1196
Score = 1432 bits (3707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1195 (62%), Positives = 884/1195 (73%), Gaps = 81/1195 (6%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E K SV TQVS+GGF A L YLE+EVG VWRCRLKTS TP SYPNF I +
Sbjct: 4 EGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADT 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
+ + D+Y+KVEPHAFVHFA RAMDAA L L+G+ LKVSLGP+NP+ LNQR
Sbjct: 64 SNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P KL + +EIG+LV++D+FFVSWR A G DFLVDPFD TCKFCF K TAF+ K
Sbjct: 124 RRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAFSFK 181
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ HAVI C++K+ LVR+I V+QY L ++L LASSPR+ YRTA DDI VP
Sbjct: 182 DAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPG 241
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPV 279
DLLDDDDPWIRTTDF+ GAIG+C+S +RVQE+ + P
Sbjct: 242 DLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPP 301
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
IR EP F PV D FFC+H+KEG+SFEIMFLVN+V+H+G+ NQ QL++ FFDLLR QP+
Sbjct: 302 RIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPK 361
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKA 399
+V + +LKH+ +YKRPVFDAY++LK VQE + KNPKL + +DI+E+RRLVITPT+A
Sbjct: 362 DVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRA 421
Query: 400 YWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y K VA+RFLRVTFMDE +QT+N+NVLSY+VAPIVKD+TS+SFSQ
Sbjct: 422 YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 481
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
KT VFKRVKSIL+DGF LCGR+YSFLAFS+NQLRD SAWFF++ G+T V DIK WMG+F
Sbjct: 482 KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFK 541
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
KN+AK AARMGLCFSST+ATV++ P EVD E+PDI+RNGYVFSDGIG ITPDLA EV +
Sbjct: 542 DKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLADEVME 601
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
LKLD P AYQIRYAG+KGVVA WP+K DGIR++LR SMKKF S HT LEICSWTRF
Sbjct: 602 KLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRF 661
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
QPGFLNRQIITLLS L V DEIFW +Q SM KLN +L +DVAFEVLTASCAEQGNTAA
Sbjct: 662 QPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAA 721
Query: 689 IMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
IMLSAGFKP+TEPHL+GML+ E G L+ QCF
Sbjct: 722 IMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCF 781
Query: 721 IQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
IQVS+ S+ENCFSKHGSRF ETK L+V+ G+V IAKNPCL PGDVRILEAVD P+LHH+
Sbjct: 782 IQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHM 841
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DCL+FPQKGDRPHTNEASGSDLDGDLY+V WD+ LIPP++KS P M AE K L
Sbjct: 842 YDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRA 901
Query: 840 VNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
VNHQ+ LG ICNAHVVHADRSEYGA DE C+LLA+LAATAVD PKTGK
Sbjct: 902 VNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGK 961
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH 946
IV+MP HLKPK YPDFM E+YQTYKSNKILGRLYR++K YDE+ SSE +P I
Sbjct: 962 IVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIP 1021
Query: 947 YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQG 1003
YD LE+PG D +A KC YDGQL GLLGQY V ++E HIWSMPKY S+KQG
Sbjct: 1022 YDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQG 1081
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVKKS 1062
EL+ERLKHSY++ +KEFR+VFE+ D E LS+ EKN+LYE+KASAWY VTYH EWVKKS
Sbjct: 1082 ELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKS 1141
Query: 1063 LDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
L+L + + +LSFAWIA DYLARIKI+ +EM +I +KPV++LA+++A R+
Sbjct: 1142 LELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196
>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 1429 bits (3700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1195 (62%), Positives = 884/1195 (73%), Gaps = 81/1195 (6%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E K SV TQVS+GGF A L YLE+EVG VWRCRLKTS TP SYPNF I +
Sbjct: 4 EGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADT 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
+ + D+Y+KVEPHAFVHFA RAMDAA L L+G+ LKVSLGP+NP+ LNQR
Sbjct: 64 SNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P KL + +EIG+LV++D+FFVSWR A G DFLVDPFD TCKFCF K TAF+ K
Sbjct: 124 RRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAFSFK 181
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ HAVI C++K+ LVR+I V+QY L ++L LASSPR+ YRTA DDI VP
Sbjct: 182 DAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPG 241
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPV 279
DLLDDDDPWIRTTDF+ GAIG+C+S +RVQE+ + P
Sbjct: 242 DLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPP 301
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
IR EP F PV D FFC+H+KEG+SFEIMFLVN+V+H+G+ NQ QL++ FFDLLR QP+
Sbjct: 302 RIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPK 361
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKA 399
+V + +LKH+ +YKRPVFDAY++LK VQE + KNPKL + +DI+E+RRLVITPT+A
Sbjct: 362 DVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRA 421
Query: 400 YWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y K VA+RFLRVTFMDE +QT+N+NVLSY+VAPIVKD+TS+SFSQ
Sbjct: 422 YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 481
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
KT VFKRVKSIL+DGF LCGR+YSFLAFS+NQLRD SAWFF++ G+T V DIK WMG+F
Sbjct: 482 KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFK 541
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
KN+AK AARMGLCFSST+ATV++ P EVD E+PDI+RNGYVFSDGIG ITPDLA EV +
Sbjct: 542 DKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLAGEVME 601
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
LKLD P AYQIRYAG+KGVVA WP+K DGIR++LR SMKK S HT LEICSWTRF
Sbjct: 602 KLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKIFSKHTILEICSWTRF 661
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
QPGFLNRQIITLLS L V EIFW +Q SM KL+ +LV +DVAFEVLTASCAEQGNTAA
Sbjct: 662 QPGFLNRQIITLLSVLGVPVEIFWDMQESMLYKLDRILVDTDVAFEVLTASCAEQGNTAA 721
Query: 689 IMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
IMLSAGFKP+TEPHL+GML+ E G L+ QCF
Sbjct: 722 IMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCF 781
Query: 721 IQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
IQVS+ S+ENCFSKHGSRF ETKK L+V+ G+V IAKNPCL PGDVRILEAVD P+LHH+
Sbjct: 782 IQVSKPSIENCFSKHGSRFKETKKDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHM 841
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DCL+FPQKGDRPHTNEASGSDLDGDLY+V WD+ LIPP++KS P M AE K L
Sbjct: 842 YDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRA 901
Query: 840 VNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
VNHQ+ LG ICNAHVVHADRSEYGA DE C+LLA+LAATAVD PKTGK
Sbjct: 902 VNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGK 961
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH 946
IV+MP HLKPK YPDFM E+YQTYKSNKILGRLYR +K YDE+ SSE +P I
Sbjct: 962 IVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRPVKEVYDEDAEASSEESTDPSAIP 1021
Query: 947 YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQG 1003
YD LE+PG D +A KCSYDGQL GLLGQY V ++E HIWSMPKY S+KQG
Sbjct: 1022 YDAVLEIPGFEDLIPEAWGHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQG 1081
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVKKS 1062
EL+ERLKHSY++ +KEFR+VFE+ D E LS+ EKN+LYE+KASAWY VTYH EWVKKS
Sbjct: 1082 ELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKS 1141
Query: 1063 LDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
L+L + + +LSFAWIA DYLARIKI+ +EM +I +KPV++LA+++A R+
Sbjct: 1142 LELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196
>gi|167995454|gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 1411 bits (3652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/1197 (60%), Positives = 872/1197 (72%), Gaps = 84/1197 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E EK V TQ+SVGGFD D+ A L +YLE +VG VWRCRLK S TP +SYP F ++
Sbjct: 4 EGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDVD-A 62
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
VQ+ DYEKV PHAFVHFA+S A+ AA EL L + L VSLGPENP+RLNQR
Sbjct: 63 ERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQR 122
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P K DV +E+G LV++D+F V WRGP +G DFLVDPF+G CK FTKDTAF+ +
Sbjct: 123 RRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFSFR 182
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
A HA+IKC FK+ FLVREI+ +K+ + + ILL LASSP + YRTA DDIE V F
Sbjct: 183 GEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAF 242
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCN---------------------SKQRVQ--EDCLSQ 277
DLLDDDD WIRTTD + SGAIG+CN S RV E C +
Sbjct: 243 DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRK 302
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ +R+EPDF V + DPFFC EG+SF++MFLVNAV+HKGI+NQHQ+++ FF LLR
Sbjct: 303 MLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSH 361
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
EV + ALKH++SYK PV DA +KL +++ L+KNPKL E +DDI EVRRLVITPT
Sbjct: 362 QEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVITPT 421
Query: 398 KAYWFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY + K VADRFLRVTFMDEG++ +N NVL+YY A IV++ITSNS
Sbjct: 422 KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSN 481
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
Q+T +F+RVKSILS GF+LCGR+YSFLAFS+NQLRD SAWFF++ + V I +WMG
Sbjct: 482 PQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
F+ +N+AK AARMG CFSST+ATVE+P +EV+ ELPDI+RNGYVFSDGIG I+ DLA+EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEV 601
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A+ L L + PPSAYQIRYAG KGVVACWP K+DGIR+SLR SMKKF S HT LEICSWT
Sbjct: 602 AEKLHLSVN-PPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
RFQPGFLNRQI+TLLS+L+V D IFW +Q M S L+ MLV SDVAF+V+TASCAE GNT
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNT 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AAIMLSAGFKPQ+EPHL+GML+ ELGEL++ Q
Sbjct: 721 AAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
CFIQVS SLENCF KHG +F++ KK LQV+ G VVIAKNPCL PGDVRILEAVD P LH
Sbjct: 781 CFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
HL DCLVFPQKGDRPH+NEASGSDLDGDLY+VTWDENLIPPSKKS PM PAE K +
Sbjct: 841 HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMG 900
Query: 838 CHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
VNH ++LG+ICNAHVVHAD SE+GA DE C+ LA+LAA AVD PKT
Sbjct: 901 RQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKT 960
Query: 885 GKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
GK+VTMP LKPK YPDFM EE+Q+YKS KILG+LYRQ+K D VS+ +++ P D
Sbjct: 961 GKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPND 1020
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRK 1001
I YD+ LE+PGS F DA N KCSYDGQL+GLLGQY VNR+E HIWSMPKY+++K
Sbjct: 1021 IPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKK 1080
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVK 1060
QGEL+ERLKH+Y+ RKEFR VFE+M DF+ L D+EKN +YE+KASAWYQVTY+ WV
Sbjct: 1081 QGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVA 1140
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+SL+L + S V+LSFAWIA DYLARIKI+ + + +KP+N+L RY+ D I
Sbjct: 1141 RSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>gi|297748117|gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1407 bits (3642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 723/1194 (60%), Positives = 870/1194 (72%), Gaps = 84/1194 (7%)
Query: 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEV 64
EK V TQ+SVGGFD D+ A L +YLE +VG VWRCRLK S TP +SYP + I+ +V
Sbjct: 7 EKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDID-AEKV 65
Query: 65 QKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGT 124
Q+ ++YEKV PHAFVHFA+S A+ AA EL L + L VSLGPENP+RLNQR T
Sbjct: 66 QRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRT 125
Query: 125 SAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSA 184
+ P K DV VE+G LV++D+F V WRGP +G DFLVDPF+GTCK FTKDTAF+ + A
Sbjct: 126 TMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEA 185
Query: 185 EHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLL 243
HA+IKC FK+ FLVREI+ +K+ + + IL LASSP + YRTA DDIE V FDLL
Sbjct: 186 RHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLL 245
Query: 244 DDDDPWIRTTDFSPSGAIGQCN---------------------SKQRVQ--EDCLSQPVT 280
DDDD WIRTTD + SGAIG+CN S +RV E C + +
Sbjct: 246 DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLR 305
Query: 281 IREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPRE 340
+++EPDF V + DPFFC EG+SF ++FLVNAV+HKGI+NQHQ+++ FF LLR E
Sbjct: 306 VKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEE 364
Query: 341 VIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAY 400
V ALKH++SYK PV DA +KL +Q+ L+KNPKL + +DDI EVRRLVITPTKAY
Sbjct: 365 VNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAY 424
Query: 401 WFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQK 449
+ K VADRFLRVTFMDEG++ +N NVL+YY A IV++ITSNS Q+
Sbjct: 425 CLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQR 484
Query: 450 TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA 509
T +F+RVKSILS GF+LCGR+YSFLAFS+NQLRD SAWFF++ + V I +WMG F+
Sbjct: 485 TAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN 544
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQI 569
+N+AK AARMG CFSST+ATVE+P +EV+ ELPDI+RNGYVFSDGIG I+ DLA+EVA+
Sbjct: 545 RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEK 604
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ 629
L L + PPSAYQIRYAG KGVVACWP K+DGIR+SLR SMKKF S HT LEICSWTRFQ
Sbjct: 605 LHLSVN-PPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQ 663
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI 689
PGFLNRQI+TLLS+L+V D IFW +Q M S L+ MLV SDVAF+V+TASCAE GNTAA+
Sbjct: 664 PGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAL 723
Query: 690 MLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCFI 721
MLSAGFKPQ+EPHL+GML+ ELGEL++ QCFI
Sbjct: 724 MLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFI 783
Query: 722 QVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
QVS SLENCF KHG +F++ KK LQV+ G VVIAKNPCL PGDVRILEAVD P L HL
Sbjct: 784 QVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLY 843
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHV 840
DCLVFPQKGDRPH+NEASGSDLDGDLY+VTWDENLIPPSKKS PM PAE K L V
Sbjct: 844 DCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQV 903
Query: 841 NH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
NH ++LG+ICNAHVVHAD SE+GA DE C+ LA+LAA AVD PKTGK+
Sbjct: 904 NHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKL 963
Query: 888 VTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHY 947
VTMP LKPK YPDFM EE+Q+YKS KILG+LYRQ+K D VS+ +++ P DI Y
Sbjct: 964 VTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPY 1023
Query: 948 DTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGE 1004
DT LE+ GS F DA N KCSYDGQLNGLLGQY VNR+E +IWSMPKYN++KQGE
Sbjct: 1024 DTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGE 1083
Query: 1005 LQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVKKSL 1063
L+ERLKH+Y+ RKEFR VFE+M DF+ L D+EKN +YE+KASAWYQVTYH WV +SL
Sbjct: 1084 LKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSL 1143
Query: 1064 DLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+L + + V+LSFAWIA DYLARIKI+ + + +KP+N+L RY+ D I
Sbjct: 1144 ELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>gi|226596555|gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 1406 bits (3639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 724/1197 (60%), Positives = 871/1197 (72%), Gaps = 84/1197 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E EK V TQ+SVGGFD D+ A L +YLE +VG VWRCRLK S TP +SYP + I+
Sbjct: 4 EGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDID-A 62
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
VQ+ ++YEKV PHAFVHFA+S A+ AA EL L + L VSLGPENP+RLNQR
Sbjct: 63 ERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLNQR 122
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P K DV VE+G LV++ +F V WRGP +G DFLVDPF+GTCK FTKDT F+ +
Sbjct: 123 RRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFSFR 182
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
A HA+IKC FK+ FLVREI+ +K+ + + ILL LASSP + YRTA DDIE V F
Sbjct: 183 GEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESVAF 242
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCN---------------------SKQRVQ--EDCLSQ 277
DLLDDDD WIRTTD + SGAIG+CN S RV E C +
Sbjct: 243 DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRK 302
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ +R+EPDF V + DPFFC EG+SF+++FL NAV+HKGI+NQHQ+ + FF LLR
Sbjct: 303 MLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLRSH 361
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
EV + ALKH++SYK PV DA +KL +Q+ L+KNPKL E +DDI EVRRLVITPT
Sbjct: 362 QEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVITPT 421
Query: 398 KAYWFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY + K VADRFLRVTFMDEG++ +N NVL+YY A IV++ITSNS
Sbjct: 422 KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSN 481
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
Q+T +F+RVKSILS GF+LCGR+YSFLAFS+NQLRD SAWFF++ + V I +WMG
Sbjct: 482 PQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
F+ +N+AK AARMG CFSST+ATVE+P +EV+ ELPDI+RNGYVFSDGIG I+ DLA+EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEV 601
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A+ L L + PP+AYQIRYAG KGVVACWP K+DGIR+SLR SMKKF S HT LEICSWT
Sbjct: 602 AEKLHLSVN-PPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
RFQPGFLNRQI+TLLS+L+V D IFW +Q M + L+ MLV SDVAF+V+TASCAE GNT
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGNT 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AA+MLSAGFKPQ+EPHL+GML+ ELGEL++ Q
Sbjct: 721 AALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
CFIQVS SLENCF KHGS+F++ KK LQV+ G VVIAKNPCL PGDVRILEAVD P L
Sbjct: 781 CFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLS 840
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
HL DCLVFPQKGDRPH+NEASGSDLDGDLY+VTWDEN+IPPSKKS PM PAE K L
Sbjct: 841 HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQLG 900
Query: 838 CHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
VNH ++LG+ICNAHVVHAD SE+GA DE C+ LA+LAA AVD PKT
Sbjct: 901 RQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKT 960
Query: 885 GKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
GK+VTMP LKPK YPDFM EE+Q+YKS KILG+LYRQ+K D VS+ +++ P D
Sbjct: 961 GKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKD 1020
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRK 1001
I YDT LE+ GS F DA N KCSYDGQLNGLLGQY VNR+E HIWSMPKY+++K
Sbjct: 1021 IPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAKK 1080
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVK 1060
QGEL+ERLKH+Y+ RKEFR VFE+M DF+ L D+EKN +YE+KASAWYQVTYH WV
Sbjct: 1081 QGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVA 1140
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+SL+L + S V+LSFAWIA DYLARIKI+ + + +KP+N+L RY+AD+I
Sbjct: 1141 RSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197
>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1188
Score = 1404 bits (3635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/1180 (59%), Positives = 864/1180 (73%), Gaps = 88/1180 (7%)
Query: 23 KAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFA 82
K DLV YLE+++G V RCRLKTSCTP ESYP F + + +++ TDDY+KV PHAFVHF
Sbjct: 12 KTSDLVSYLESKIGYVDRCRLKTSCTPPESYPEFTMTDTKQIEITDDYKKVAPHAFVHFT 71
Query: 83 TSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVT 142
T A++AA +L LNG+ LKV GP+NP LNQR T AP K+ DV VEIG+LV+
Sbjct: 72 LPDSATEALNAAGRCDLILNGKVLKVISGPQNPNFLNQRRRTEAPFKMSDVIVEIGTLVS 131
Query: 143 QDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCEFKV-FLVREI 201
+F V+WRG G +FLVDPFD CK CF +DTAF+ K + AVIKC+FKV FL+R+I
Sbjct: 132 PADFTVAWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGIGKQAVIKCDFKVGFLIRDI 191
Query: 202 DIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAI 261
+ +++Y + + +LL LASSP + YRTA DDI+ V DLLDDDDPWIRTTDF+PSGAI
Sbjct: 192 EEIQRYDDTSHLVVLLRLASSPLVWYRTADDDIDESVTIDLLDDDDPWIRTTDFTPSGAI 251
Query: 262 GQCN---------------------SKQRVQEDCLSQPVTIREEPDFEVPVEDPFFCMHY 300
G+CN +QRV L +P I+ EPDF VP+ D FF +
Sbjct: 252 GRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIPLKRPPKIQNEPDFGVPMSDAFFYIDS 311
Query: 301 KEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAY 360
++ +SF+IMFL+NA++H+GI NQ+ LS+ FF+LL+ QP++V V ALKHI +YK PVFDA
Sbjct: 312 QKDISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHPVFDAA 371
Query: 361 EKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------FLESKDVA 409
++L+ VQ+ L++NPK + K DD+ EVRRLV+TPTKAY ++V+
Sbjct: 372 KRLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVS 431
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
DRFLRVTFMDEG QT+N L+YYVAPIVK+ITSNSF QKT ++KRVK+IL DGF CGR
Sbjct: 432 DRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGR 491
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHAT 529
+YSFLAFSSNQLRD SAWFF++ + + DI+NWMG F KN+AK AARMG CFSST+A+
Sbjct: 492 KYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQKNVAKCAARMGQCFSSTYAS 551
Query: 530 VEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYK 589
VE+P EV+ LPD++RN YVFSDGIG IT DLA+EVA+ LKLD + PSAYQIRYAG+K
Sbjct: 552 VEVPANEVNSMLPDVERNNYVFSDGIGIITTDLAVEVAEKLKLDKA--PSAYQIRYAGFK 609
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
GVVACWPAK DGI++SLR SM KF+S HT+LEIC+WTRFQPGFLNRQIITLLS L+V DE
Sbjct: 610 GVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDE 669
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY 709
IFW +Q M S LN MLV DVA++VLT SCAE GN AAIMLS GF P+TEPHL+GML
Sbjct: 670 IFWKMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNS 729
Query: 710 ----------------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAE 741
ELG L++ QCF+QVS SLENCFSKHGSRF+E
Sbjct: 730 IRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSE 789
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSD 801
TK + V+ G VVIAKNPCL PGDVR+LEAVD P+LHHL DC+VFPQKG+RPHT+EASGSD
Sbjct: 790 TKTVHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSD 849
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQN-------------LGQI 848
LDGDLY+VTWD NLIPPSK+S PPME E++ T V Q+ LG I
Sbjct: 850 LDGDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSI 909
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY 908
CNAHVVHAD S+YGA DENC+ LA+LAATAVD PKTGK+VTMPS+LKPK YPDFM E +
Sbjct: 910 CNAHVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHH 969
Query: 909 QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKC 968
Q+YKS KILGRLYR+IK AYD++I + E + DI YDTDLEVPGS +F ADA Q+C
Sbjct: 970 QSYKSKKILGRLYRRIKDAYDKDID-APEFNCVSSDILYDTDLEVPGSSEFIADAWEQRC 1028
Query: 969 SYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFE 1025
SYDGQL+GLLGQY V +E IWSMPKYNSRKQGEL+ERLKHSYSA +KEFRQ+FE
Sbjct: 1029 SYDGQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIFE 1088
Query: 1026 KMNSDF-ELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSAR-------SVVLL 1077
K+ SD ELSD EKN+LYEQKASAWYQVTYH +WVKKSLDL + S ++V+L
Sbjct: 1089 KLKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVML 1148
Query: 1078 SFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
SF WIA DYLA K + + + + +K V++LA+Y+++R+
Sbjct: 1149 SFPWIAVDYLACTKTRHRRVKDFDSTKQVDSLAKYLSERL 1188
>gi|194719815|emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1397 bits (3617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 723/1197 (60%), Positives = 870/1197 (72%), Gaps = 84/1197 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E EK V TQ+SVGGFD D+ A L +YLE +VG VWRCRLK S TP +SYP + I+
Sbjct: 4 EGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDID-A 62
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
V + DYEKV PHAFVHFA+S A+ AA EL L + L VSLGPENP+RLNQR
Sbjct: 63 ERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQR 122
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P K DV VE+G LV++D+F V WRGP +G DFLVDPF+GTCK FTKDTAF+ +
Sbjct: 123 RRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFR 182
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
A HA+IKC FK+ FLVREI+ +K+ + + IL LASSP + YRTA DDIE V F
Sbjct: 183 GEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAF 242
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCN---------------------SKQRVQ--EDCLSQ 277
DLLDDDD WIRTTD + SGAIG+CN S +RV E C +
Sbjct: 243 DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRK 302
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ +++EPDF V + DPFFC EG+SF++MFLVNAV+HKGI+NQHQ+++ FF LLR +
Sbjct: 303 MLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSR 361
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
EV + ALKH++SYK PV DA +KL +Q+ L+KNPKL E +DDI EVRRLVITPT
Sbjct: 362 QEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPT 421
Query: 398 KAYWFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY + K VADRFLRVTFMDEG++ +N NVL+YY A IV++ITSNS
Sbjct: 422 KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSN 481
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
Q+T +F+RVKSILS GF+LCGR+YSFLAFS+NQLRD SAWFF++ + V I +WMG
Sbjct: 482 PQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
F+ +N+AK AARMG CFSST+ATVE+P +EV+ ELPDI+RNGYVFSDGIG I+ DLA+EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEV 601
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A+ L L+ + PPSAYQIRYAGYKGVVACWP K+DGI +SLR SMKKF S HT LEICSWT
Sbjct: 602 AEKLHLNVN-PPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
RFQPGFLNRQI+TLLS+L+V D IFW +Q M S L+ MLV SDVAF+V+TASCAE GNT
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNT 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AA+MLSAGFKPQ+EPHL+GML+ ELGEL++ Q
Sbjct: 721 AALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
CFIQVS SLENCF KHG +F++ KK LQV+ G VVIAKNPCL PGDVRILEAVD P L
Sbjct: 781 CFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLS 840
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
HL DCLVFPQKGDRPH+NEASGSDLDGDLY+VTWDENLIPPSKKS PM PAE K L
Sbjct: 841 HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLG 900
Query: 838 CHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
VNH ++LG+ICNAHVVHAD SE+GA DE C+ LA+LAA AVD PKT
Sbjct: 901 RQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKT 960
Query: 885 GKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
GK+VTMP LKPK YPDFM EE+Q+YKS KILG+LYRQ+K D VS+ +++ P D
Sbjct: 961 GKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKD 1020
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRK 1001
I YDT L +PGS F DA N KCSYDGQL+GLLGQY VNR+E HIWSMPKY+++K
Sbjct: 1021 IPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKK 1080
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKM-NSDFELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
QGEL+ERLKH+Y+ RKEFR VFE+M L D+EKN +YE+KASAWYQVTY+ WV
Sbjct: 1081 QGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVA 1140
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+SL+L + S V+LSFAWIA DYLARIKI+ + + +KP+N+L RY+ D+I
Sbjct: 1141 RSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 1394 bits (3608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/1197 (60%), Positives = 867/1197 (72%), Gaps = 84/1197 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E EK V TQ+SVGGFD D+ A L +YLE +VG VWRCRLK S TP +SYP + ++
Sbjct: 4 EGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDVD-A 62
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
A V + DYEKV PHAFVHFA+S A+ AA L L + L VSLGPENP+RLNQR
Sbjct: 63 ARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLNQR 122
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P K DV VE+G LV++D+F V WRGP +G DF VDPF+G CK FTKDTAF+ +
Sbjct: 123 RRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFSFR 182
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
A+HA+IKC FK+ F+VREI+ +K++ + + ILL LASSP + YRTA DDIE V F
Sbjct: 183 GEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESVAF 242
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCN---------------------SKQRVQ--EDCLSQ 277
DLLDDDD WIRTTD + SGAIG+CN S RV E C +
Sbjct: 243 DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRK 302
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ +R+EPDF V + DPFFC EG+SF++MFLVNAV+HKGI+NQHQ+++ FF LLR
Sbjct: 303 MLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSH 361
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
EV + ALKH++SYK PV DA +KL +Q+ L+KNPKL E +DDI EVRRLVITPT
Sbjct: 362 QEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPT 421
Query: 398 KAYWFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY + K VADRFLRVTFMDEG++ +N NVL+YY A IV++ITSNS
Sbjct: 422 KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSN 481
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
Q+T +F+RVKSILS GF+LCGR+YSFLAFS+NQLRD SAWFF++ + V I +WMG
Sbjct: 482 PQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
F+ +N+AK AARMG CFSST+ATVE+P +EV+ ELPDI+RNGYVFSDGIG I+ DLA+EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLALEV 601
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A+ L L + PPSAYQIRYAG KGVVACWP K+DGI +SLR SMKKF S HT LEICSWT
Sbjct: 602 AEKLHLSVN-PPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
RFQPGFLNRQI+TLLS+L+V D IFW +Q M S LN MLV SDVAF+V+TASCAE GNT
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGNT 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AAIMLSAGFKPQ+EPHL+GML+ ELGEL++ Q
Sbjct: 721 AAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
CFIQVS SLENCF KHG +F++ KK LQV+ G VVIAKNPCL PGDVRILEAVD P LH
Sbjct: 781 CFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
HL DCLVFPQKGDRPH+NEASGSDLDGDLY+VTWDENLIPPSKKS PM PAE K L
Sbjct: 841 HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLG 900
Query: 838 CHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
VNH ++LG+ICNAHVVHAD SE+GA DE C+ LA+LAA AVD PKT
Sbjct: 901 RQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKT 960
Query: 885 GKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
GK+VTMP LKPK YPDFM EE+Q+YKS KILG+LYRQ+K D VS+ +++ P D
Sbjct: 961 GKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPND 1020
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRK 1001
I YD+ LE+PGS F DA N KCSYDGQL+GLLGQY VNR+E HIWSMPKY+++K
Sbjct: 1021 IPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKK 1080
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKM-NSDFELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
QGEL+ERLKH+Y+ RKEFR VFE+M L D+EKN +YE+KASAWYQVTY+ WV
Sbjct: 1081 QGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVA 1140
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+SL+L + S V+LSFAWIA DYLARI I+ + + +KP+N+L RY+ D I
Sbjct: 1141 RSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>gi|163930853|dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1389 bits (3595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1197 (60%), Positives = 867/1197 (72%), Gaps = 84/1197 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E EK V TQ+S GGFD D+ A L +YLE +VG VWRCRLK S TP +SYP + I+
Sbjct: 4 EGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDID-A 62
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
+VQ+ ++YEKV PHAFVHFA+S A+ AA EL L + L VSLGPENP+RLNQR
Sbjct: 63 EKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQR 122
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P K DV VE+G LV++D+F V WRGP +G DF VDPF+GTCK FTKDTAF+ +
Sbjct: 123 RRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFSFR 182
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
A HA+IKC FK+ F+VREI+ +K+ + + ILL LASSP + YRTA DDIE V F
Sbjct: 183 GEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAF 242
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCN---------------------SKQRVQ--EDCLSQ 277
DLLDDDD WIRTTD + SGAIG+CN S RV E C +
Sbjct: 243 DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRK 302
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ +++EPDF V + DPFFC EG+SF++MFLVNAV+HKGI+NQHQ+++ FF LLR +
Sbjct: 303 MLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSR 361
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
EV ALKH++SYK PV DA +KL +Q+ L+KNPKL + +DDI EVRRLVITPT
Sbjct: 362 QEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPT 421
Query: 398 KAYWFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY + K VADRFLRVTFMDEG++ +N NVL+YY A IV++ITSNS
Sbjct: 422 KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSN 481
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
Q+T +F+RVKSILS GF+LCGR+YSFLAFS+NQLRD SAWFF++ + V I +WMG
Sbjct: 482 PQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
F+ +N+AK AARMG CFSST+ATVE+P EV+ ELPDI+RNGYVFSDGIG I+ DLA+EV
Sbjct: 542 FSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIEV 601
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A+ L L + PPSAYQIRYAG KGVVACWP K+DGIR+SLR SMKKF S HT LEICSWT
Sbjct: 602 AEKLHLSVN-PPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
RFQPGFLNRQI+TLLS+L+V D IFW +Q M S L+ MLV SDVAF+V+TASCAE GNT
Sbjct: 661 RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNT 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AAIMLSAGFKPQ+EPHL+GML+ ELGEL++ Q
Sbjct: 721 AAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
CFIQVS SLENCF KHG +F++ K+ LQV+ G VVIAKNPCL PGDVRILEAVD P L
Sbjct: 781 CFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLS 840
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
HL DCLVFPQKGDRPH+NEASGSDLDGDLY+VTWDENLIPPSKKS PM PAE K L
Sbjct: 841 HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLG 900
Query: 838 CHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
VNH ++LG+ICNAHVVHAD SE+GA DE C+ LA+LAA AVD PKT
Sbjct: 901 RQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKT 960
Query: 885 GKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
GK+VTMP LKPK YPDFM EE+Q+YKS KILG+LYRQ+K D VS+ +++ P D
Sbjct: 961 GKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKD 1020
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRK 1001
I YD+ LE+ GS F DA N KCSYDGQL+GLLGQY VNR+E HIWSMPKY+++K
Sbjct: 1021 IPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKK 1080
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKM-NSDFELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
QGEL+ERLKH+Y+ RKEFR VFE+M L D+EKN +YE+KASAWYQVTYH WV
Sbjct: 1081 QGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVA 1140
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+SL+L + + V+LSFAWIA DYLARIKI+ + + +KP+N+L RY+ D I
Sbjct: 1141 RSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
Length = 1197
Score = 1368 bits (3542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/1197 (59%), Positives = 853/1197 (71%), Gaps = 84/1197 (7%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E+ + V TQ+SVGGF D+ A L +YLE +VG VWRCRLKTS TP +SYP + I+ V
Sbjct: 4 EDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDID-V 62
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
+V++ ++Y KVEPHAFVHFA+S A+ AA ELFL + LKVSLGPEN F +N+R
Sbjct: 63 EKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMNER 122
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T P K DV VEIG LV+ D+F V WRGP SG +FLVDPF+G CK FT+DTAF K
Sbjct: 123 RRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFCFK 182
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+HAVIKC FK+ FL+REI+ + + + + +LL LASSP + YRTA DDIE V F
Sbjct: 183 GEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESVAF 242
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCN-----------------------SKQRVQEDCLSQ 277
DLLDDDD WIRTTD + SGAIG+ N S+ V E Q
Sbjct: 243 DLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQG-EQ 301
Query: 278 PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ 337
+ +R EPDF V +PFFC EG+SF+++FLVNAV+HKGI+NQHQ++ FF LLR
Sbjct: 302 MLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRKH 361
Query: 338 PREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
V + ALKHI+SYKRPV DA KL VQ+ L NP L E +DD+ EVRRLVITPT
Sbjct: 362 QEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITPT 421
Query: 398 KAYWFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
KAY + K ++DRFLRVTFMDEG++ +N N L+YY A IV++ITS+S
Sbjct: 422 KAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSSN 481
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
Q+TG+F+RVK I++ GF LCGRRYSFLAFS+NQLRD SAWFF++ E V I NWMG+
Sbjct: 482 PQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMGK 541
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
F +N+AK AARMG CFSST+ATVE+ P+EV+ ELPDI+RNGYVFSDGIG +T DL++EV
Sbjct: 542 FGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIEV 601
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A L+L + PP AYQIRYAG KGVVACWPA+ DGIR+SLR SMKKF S HT LEICSWT
Sbjct: 602 AAKLQLSVN-PPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
R QPGFLNRQIITLLS+L V DE+FW +Q M SKL+ +LV SDVAF+V+TASCAE GNT
Sbjct: 661 RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNT 720
Query: 687 AAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQ 718
AAIMLSAGFKPQ+EPHL+GML ELGEL++ Q
Sbjct: 721 AAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQ 780
Query: 719 CFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
CFIQVS SLE CF KHG F+E KK LQV+ G VVIAKNPCL PGDVRILEAVD P LH
Sbjct: 781 CFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
HL DCLVFPQKGDRPH+NEASGSDLDGDLY+VTWDENLIPPSKKS PM PAEAK L
Sbjct: 841 HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLG 900
Query: 838 CHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
V H ++LG+ICNAHVVHAD SE+GA DE C+ LA+LAA AVD PKT
Sbjct: 901 RQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKT 960
Query: 885 GKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
GK+VTMP LKPK YPDFM E +Q+Y+S KILG+LYRQ+ YD SS ++ P D
Sbjct: 961 GKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKD 1020
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRK 1001
I YDT+LE+PG DF DA N KCSYDGQLNGLLGQY VN +E HIWSMPKY+++K
Sbjct: 1021 IPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKK 1080
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKMNSDFELSD-NEKNVLYEQKASAWYQVTYHREWVK 1060
QGEL+ERLKH+Y+ RKEFR VFE+M DF+L +EKN +YE+KA AWY+VTYH WV
Sbjct: 1081 QGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWVT 1140
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+SL+L + + V+LSFAWIA DY+ARIKI+ + M N +KP+++L RY+ ++I
Sbjct: 1141 RSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197
>gi|296082033|emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 1248 bits (3229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/986 (65%), Positives = 743/986 (75%), Gaps = 83/986 (8%)
Query: 212 RVAILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS----- 266
R+ I + L+SSP + YRTA DDIE VPFDLLDDDDPWIRTTDF+ SGAIG+CNS
Sbjct: 53 RLEIGILLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISI 112
Query: 267 ------------------KQRVQEDCLSQPVTIREEPDFEVPVEDPFFCMHYKEGVSFEI 308
+ V ED + +R+EPDF +P+ DPFFC+ +KEG+ F +
Sbjct: 113 PPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRV 172
Query: 309 MFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQE 368
MFLVNAVMHKGI+NQHQLSD FFDLLR Q +++ + ALKHI SY+ PVFDAY++LK V +
Sbjct: 173 MFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHK 232
Query: 369 CLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF-----------LESKDVADRFLRVTF 417
L+KNPKL + PK +DDI EVRRLVITP+KAY K+V+DRFLRVTF
Sbjct: 233 WLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTF 292
Query: 418 MDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFS 477
MDEG+QT+NANVL+YYVAPIVK ITSNSF QKT VFKRVK+IL+DGF LCGR+YSFLAFS
Sbjct: 293 MDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFS 352
Query: 478 SNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEV 537
SNQLRD SAWFF++ +TSV IK+WMG+FT +N+AK AARMG CFSST+ATVE+P EV
Sbjct: 353 SNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV 412
Query: 538 DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPA 597
ELPDIKRNGY FSDGIGKI PDLAMEVA+ LKL+G+P SAYQIRYAG KGVVACWP+
Sbjct: 413 -KELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLEGTP--SAYQIRYAGCKGVVACWPS 469
Query: 598 KDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQAS 657
+DGIR+S R SM KF S HT LEICSWTRFQPGFLNRQI+TLLS LNV D+IFW +Q S
Sbjct: 470 DNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQES 529
Query: 658 MASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------- 709
M SKLN ML +DVAF+VL ASCAEQGNTAAIMLSAGFKPQTEPHLQGMLT
Sbjct: 530 MISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWG 589
Query: 710 --------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVIN 749
ELG L++ QCFIQVS SLENCF KHGSRF+ K L+VI
Sbjct: 590 LREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSAQKNLKVIK 649
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
G V IAKNPCL PGDVRILEAVD P L HL DCLVFPQKGDRPH+NEASGSDLDGDLY+V
Sbjct: 650 GIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFV 709
Query: 810 TWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHVVHA 856
TW+E LIPPSK+S PPM+ AEAK L V ++NLG ICNAHVVHA
Sbjct: 710 TWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHA 769
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKI 916
DRSEYGA DE C+ LA+ AATAVD PKTGK+VT+P +LKPK YPDFM EE+QTY+SNKI
Sbjct: 770 DRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKI 829
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNG 976
LG++YRQIK AY+E++S SSE + +D DL +PGS DF DA KCSYDGQLNG
Sbjct: 830 LGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNG 889
Query: 977 LLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDF-E 1032
LLGQY V R+E H+WSMPKY SRKQGEL ERLKH+YS+ +KEFRQ+FEKMNSDF +
Sbjct: 890 LLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQ 949
Query: 1033 LSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSA-RSVVLLSFAWIANDYLARIK 1091
L+D+EKN LYEQKASAWYQVTYH WVKKSL+L V+LSFAWI DYLARIK
Sbjct: 950 LTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIK 1009
Query: 1092 IKCQEMANIGKSKPVNNLARYVADRI 1117
I+ + N+ SKP+N+LAR++ DRI
Sbjct: 1010 IRRKGTGNVDSSKPINSLARFLVDRI 1035
>gi|357119219|ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 1203 bits (3113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/1206 (53%), Positives = 808/1206 (66%), Gaps = 95/1206 (7%)
Query: 1 PEEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIEN 60
PE V TQVS+GGF + A +L +LE E G VWRCR+KTS TP +S+P+F
Sbjct: 9 PEPAPGDLVTTQVSLGGFGAGVSASELADFLEYEAGLVWRCRVKTSWTPPDSFPDFLRST 68
Query: 61 V-AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLN 119
A Y++V PHAFVHFA RA DAA EL G+ L ++ ++ R +
Sbjct: 69 ASASGAPPPPYDRVPPHAFVHFARPEAARRATDAAGKSELLFGGKPLLIASASDSSLRAS 128
Query: 120 QRGGTSAPLKLPDVYVEIGS-LVTQDE----FFVSWRGPASGTDFLVDPFDGTCKFCFTK 174
+R P + D +E+GS L DE F +WRGPA+G +FLVDPFD C+ FT+
Sbjct: 129 RRQNIK-PFRFADAVLEVGSFLAPGDEAPEAFLAAWRGPAAGLEFLVDPFDACCRLIFTR 187
Query: 175 DTAFALKSSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDD 233
DTAFA E V+ C+ K+ F V ++ V+ Y ++LL L ++PR+ YRTA DD
Sbjct: 188 DTAFAFPGYREVPVMGCDVKLEFSVGDVAAVRVYRN--DCSLLLRLTAAPRVYYRTADDD 245
Query: 234 IEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCN---------------------SKQRV-- 270
I V VPFDLLDDDDPWIRTTD + SGAIG+C QRV
Sbjct: 246 IHVSVPFDLLDDDDPWIRTTDITMSGAIGRCGMYRIKVAPRKWIMMDRALAYMKGQRVLI 305
Query: 271 -QEDCLSQP---VTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQL 326
+ S P + +R+EP+FE P++D FFC+ + EG+ F ++FLVNA++HKGI+NQHQL
Sbjct: 306 VESTVWSGPRRGLKVRDEPEFEEPMQDLFFCVQHAEGLKFPVLFLVNALVHKGIINQHQL 365
Query: 327 SDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDI 386
+ F LL + +V V ALK + K PVF+A ++L+ + NPKL K DD
Sbjct: 366 TPEFLSLLSGRDDDVNVAALKEFWGDKFPVFNARKRLEHAHRRVASNPKLLRSGKVGDDN 425
Query: 387 AEVRRLVITPTKAYWF-----LESK------DVADRFLRVTFMDEGLQTMNANVLSYYVA 435
EVRRLVITPT A L ++ +VADRFLRVTFMDEG+Q++N NVL++Y A
Sbjct: 426 VEVRRLVITPTSASCLPPQIELSNRVLRHYHEVADRFLRVTFMDEGMQSLNNNVLNFYTA 485
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET 495
PIVK + NSF QKT V+KRVK L++GF++CGR+YSFLAFSSNQLRD SAWFF++ +T
Sbjct: 486 PIVKALRPNSFQQKTAVYKRVKMFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDSKT 545
Query: 496 SVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGI 555
+V I+ WMG FT+KN+AK+AARMG CFSST+ATV + P EV+ L D++RN Y FSDGI
Sbjct: 546 TVESIRKWMGRFTSKNVAKHAARMGQCFSSTYATVMVKPDEVNESLEDVERNNYTFSDGI 605
Query: 556 GKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS 615
GKITPDLAMEVA+ L+L S PPSAYQIRYAGYKGV+A W ++GIR+SLR SMKKF+S
Sbjct: 606 GKITPDLAMEVAEKLQLMDS-PPSAYQIRYAGYKGVIAVWQGNNNGIRLSLRPSMKKFES 664
Query: 616 CHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV 675
H+ LE+ SWTRFQPGFLNRQII LLS+LNVSD+IF +Q SM LN +L+ SDVAFEV
Sbjct: 665 KHSVLEVVSWTRFQPGFLNRQIILLLSSLNVSDDIFSQMQESMLFNLNKILLDSDVAFEV 724
Query: 676 LTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------------------------- 709
+T SCAEQGNTAA+MLSAGF P TEPHL+GML
Sbjct: 725 VTTSCAEQGNTAALMLSAGFGPGTEPHLRGMLLAIRSAQLQDLLEKTRIFVPKGRWLMGC 784
Query: 710 --ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRI 767
ELG L++ QCF+Q S +SL+ CF KHGSRF+ K +I G VVIAKNPCL PGDVRI
Sbjct: 785 LDELGVLEQGQCFVQASAASLDRCFLKHGSRFSANKNTDIIVGTVVIAKNPCLHPGDVRI 844
Query: 768 LEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME 827
LEAVD PELHHL DCLVFPQKG+RPH NEASGSDLDGDLY+VTWDE L+PP KKS PM+
Sbjct: 845 LEAVDVPELHHLVDCLVFPQKGERPHPNEASGSDLDGDLYFVTWDEKLVPPGKKSWNPMD 904
Query: 828 CTPAEAKPLTCHVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKL 874
+PAEAK V+ ++NLG ICNAHVVHAD SEYGA DE CI LA+L
Sbjct: 905 YSPAEAKQQQRQVSQHDIVDFFLKNMVNENLGPICNAHVVHADLSEYGAMDEKCIRLAEL 964
Query: 875 AATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISV 934
AATAVD PKTGK+VTMP L+PK YPDFM EE ++YKS KILGRLYR I+ A ++
Sbjct: 965 AATAVDFPKTGKLVTMPPELRPKIYPDFMLKEESRSYKSEKILGRLYRSIQEASGGDLVS 1024
Query: 935 SSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV-NRKEF--RHI 991
+N D+ YDTDLEVPG+ F A KC+Y+GQLN LL Q V E H+
Sbjct: 1025 EEACTLN--DLLYDTDLEVPGASRFLTSAWECKCNYEGQLNVLLNQSRVCTEAELVTGHV 1082
Query: 992 WSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQ 1051
WS+PKYNSRKQGE++ER+K++Y+A +KE+R VFE + +++D+EKN+LYE+KASAWYQ
Sbjct: 1083 WSLPKYNSRKQGEIRERIKNAYAALQKEYRSVFESLTDQCQITDDEKNLLYERKASAWYQ 1142
Query: 1052 VTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
VTYH +WV+K +L++ LSFAWIA DYL RIK++ KPV LA
Sbjct: 1143 VTYHPKWVEKLRAMLDEDGEERPARLSFAWIAVDYLVRIKLRSHGGVKAEGRKPVERLAA 1202
Query: 1112 YVADRI 1117
Y+++RI
Sbjct: 1203 YISERI 1208
>gi|75330108|sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2
gi|21328146|dbj|BAC00725.1| putative RNA-dependent RNA polymerase [Oryza sativa Japonica Group]
gi|157279691|dbj|BAF80151.1| SHOOTLESS2 [Oryza sativa Japonica Group]
Length = 1218
Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1198 (53%), Positives = 801/1198 (66%), Gaps = 96/1198 (8%)
Query: 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTD 68
V TQVS+GGFD + A DL +LE+EVG VWRCR+KTS TP +SYP+F +
Sbjct: 28 VTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASAA 87
Query: 69 D----YEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGT 124
Y++V PHAFVHFA RA D A L L G+ L+V+ P++ R+++R
Sbjct: 88 AAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSSI 147
Query: 125 SAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSA 184
AP + PDV +E+G+L + F +WRGP +G D VDPFDG C+ FT+DTAF
Sbjct: 148 -APFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFR 206
Query: 185 EHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLL 243
E A I+C+ K+ F VR++ V+ Y ++LL LA++P + YRTA DD VPFDLL
Sbjct: 207 EVAAIRCDVKLEFPVRDVLEVRLYRL--DCSLLLRLAAAPLVHYRTADDDFHEPVPFDLL 264
Query: 244 DDDDPWIRTTDFSPSGAIGQCN---------------------SKQRVQ-EDCLS----- 276
DDDDPWIRTTD +PSGAIG+C ++RV DC
Sbjct: 265 DDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGPR 324
Query: 277 QPVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRC 336
+ +T+R+E +F P++D FFC+ + EG+ F ++F+VNA++HKGI+NQHQL+ FF LL
Sbjct: 325 RGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGR 384
Query: 337 QPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITP 396
V V AL+ + K PVFDA +LK + +NPKL K DD AEVRRLVITP
Sbjct: 385 SEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKL-LCSKVGDDHAEVRRLVITP 443
Query: 397 TKAYWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNS 445
T+AY +VADRFLRVTFMDEG+Q +N NVL+ + APIVKD+ SN
Sbjct: 444 TRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNF 503
Query: 446 FSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMG 505
F QKT V+KRV+ +L++GF++CGR+YSFLAFSSNQLRD SAWFF++ +T+V I+ WMG
Sbjct: 504 FQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMG 563
Query: 506 EFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAME 565
FT+KN+AK+AARMG CFSST+ATV + P EVD D+ N Y+FSDGIGKITPDLA+E
Sbjct: 564 RFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLALE 623
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW 625
VA+ L+L + PPSAYQIR+AG+KGV+A W DG R+ LR SM+KF+S H LE+ SW
Sbjct: 624 VAERLQLTDN-PPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSW 682
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN 685
T+FQPGFLNRQII LLS+LNV D IFW +Q +M S LN +L DVAFEVLT SCA+ GN
Sbjct: 683 TKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDGN 742
Query: 686 TAAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKEC 717
TAA+MLSAGF+P+TEPHL+ ML ELG L++
Sbjct: 743 TAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQG 802
Query: 718 QCFIQVSESSLENCFSKHGSRFAET-KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
QCFI+ + SL + F KHGSRF+ T K +VI G VVIAKNPCL PGDVRILEAVD PEL
Sbjct: 803 QCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPEL 862
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
HHL DCLVFPQKG+RPH NEASGSDLDGDLY+VTWDE LIPP KKS PM+ +P EAK L
Sbjct: 863 HHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQL 922
Query: 837 TCHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
V+ +NLG+ICNAHVVHAD SEYGA DE CI LA+LAATAVD PK
Sbjct: 923 PRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPK 982
Query: 884 TGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
TGK+ MP HLKPK YPDFM E+ Q+YKS KILGRLYR I+ A + ++ VS EV P
Sbjct: 983 TGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDV-VSQEV-CTPN 1040
Query: 944 DIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSR 1000
D+ YD DLEVPG+ DF A A KCSYD QL+ LL QY V + HI + K +S+
Sbjct: 1041 DLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSK 1100
Query: 1001 KQGELQERLKHSYSAFRKEFRQVFEKMNSD-FELSDNEKNVLYEQKASAWYQVTYHREWV 1059
KQG++++RLK +YSA RKEF+ FE + SD E+ D+EKN+LYE KASAWYQVTYH +WV
Sbjct: 1101 KQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWV 1160
Query: 1060 KKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+KS +L LSFAWI DYLARIK++C + KPV LA Y+++RI
Sbjct: 1161 EKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218
>gi|242057591|ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 1162 bits (3005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/1192 (51%), Positives = 805/1192 (67%), Gaps = 93/1192 (7%)
Query: 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV-AEVQKT 67
V TQVS+GGFD +KA+DL +LE + G VWRCR+KTS TP ++YP+F + V + +
Sbjct: 20 VTTQVSLGGFDATVKALDLADFLELKAGLVWRCRVKTSWTPPDAYPDFLLPTVTSAAAQP 79
Query: 68 DDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAP 127
Y++V PHAFVHFA A DAA EL L+G+ L+ + E+ R + +P
Sbjct: 80 PQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAASAQES-SLRASRRRSVSP 138
Query: 128 LKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHA 187
+ P +E+G L +D F +WRGPASG +F VDPFDG+C+ F +DTAF ++ E
Sbjct: 139 FRFPGSRLEVGDLPAKDAFLAAWRGPASGLEFSVDPFDGSCRLIFARDTAFKVREFRESV 198
Query: 188 VIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLDDD 246
V++C+ K+ F VR++ V+ + ++L+ L+++P + YRTA DDI VPFDLLDDD
Sbjct: 199 VMRCDVKLEFPVRDVAEVRVFRL--DCSLLIRLSAAPLVYYRTADDDIHESVPFDLLDDD 256
Query: 247 DPWIRTTDFSPSGAIGQCNS---------------------KQRVQ-EDC-----LSQPV 279
DPWIRTTD +PSGAIG+C + +RV DC + +
Sbjct: 257 DPWIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALAYMRDRRVPIVDCGGGWGARRGL 316
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
T+R+EP+F ++D FFC+ + EG+ F ++FLVNA++HKG++NQH L+ FF LL+ +
Sbjct: 317 TVRDEPEFGERMQDLFFCVQHSEGLKFPVLFLVNALVHKGVINQHHLTPEFFGLLQRKED 376
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKA 399
+V V AL+ + K PVFDA +LK++Q+ + + PKL K DD +EVRRLV+TPTKA
Sbjct: 377 DVNVAALREFWGDKFPVFDACGRLKNLQDRVARYPKLLRN-KIGDDNSEVRRLVVTPTKA 435
Query: 400 YWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y ++V DRFLRVTFMDEG+Q +N+NVL++ A IVKD+ SNSF
Sbjct: 436 YCLPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNVLNFSAAQIVKDLMSNSFLH 495
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
KT V+KR+K+ L++GF++CGR+YSFLAFSSNQLRD SAWFF++ +V I+ WMG FT
Sbjct: 496 KTTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRMRTVETIRKWMGRFT 555
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
+KN+AK+AARMG CFSST+ATV + P EV+ L +++RNGY+FSDGIGKIT DLA+EVAQ
Sbjct: 556 SKNVAKHAARMGQCFSSTYATVVMQPHEVNECLEEVERNGYIFSDGIGKITCDLALEVAQ 615
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
L+L + PPSAYQIRYAG+KGV+A W ++DGIR+SLR SM KF+S H LE+ SWT+F
Sbjct: 616 KLRLTDN-PPSAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMHKFESNHNVLEVVSWTKF 674
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
QPGFLNRQIITLLS+LNV D IF +Q +M S LN +L +DVAF+++T SCAEQGNTAA
Sbjct: 675 QPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDIVTTSCAEQGNTAA 734
Query: 689 IMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
+MLSAG P TEPHL+ ML ELG L++ QCF
Sbjct: 735 LMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQCF 794
Query: 721 IQVSESSLENCFSKHGSRFAET-KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
I+ S SL NC KHG RF+ K + I G +V+AKNPCL PGDVRILEAVD PELHHL
Sbjct: 795 IRASSPSLNNCLVKHGPRFSSANKNAETIVGTIVMAKNPCLHPGDVRILEAVDVPELHHL 854
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DCLVFP+KG+RPH NEASGSDLDGDLY+VTWDENLIPP KKS PM+ +P EAK L
Sbjct: 855 VDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPTEAKQLPRA 914
Query: 840 VN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
V+ ++ LG I NAHVVHAD SEYGA DE CI LA+LAATAVD PKTGK
Sbjct: 915 VSPHDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQLAELAATAVDFPKTGK 974
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH 946
IV+MP L+PK YPDFM E+ +YKS KILGRLYR I+ A ++ +N D+
Sbjct: 975 IVSMPPSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQEASSGDLVPEETCTLN--DLP 1032
Query: 947 YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQG 1003
YD D+EVPG+ DF + A KCSY+ QLN LL QY V + HIWS+PKY+SRKQG
Sbjct: 1033 YDADMEVPGATDFLSSAWECKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKYSSRKQG 1092
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSD-FELSDNEKNVLYEQKASAWYQVTYHREWVKKS 1062
+++ERLK++YSA K+FR +FE +D E+SD+EK YE KASAWYQVTYH +WV+KS
Sbjct: 1093 DIKERLKNAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMKASAWYQVTYHPKWVQKS 1152
Query: 1063 LDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVA 1114
++L+ LSFAWI ++LARIKI+C + +PV LA Y++
Sbjct: 1153 REMLKPDFEDMPARLSFAWIGVEHLARIKIRCHGEVKVDSRRPVERLAAYIS 1204
>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 1160 bits (3002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/985 (61%), Positives = 726/985 (73%), Gaps = 77/985 (7%)
Query: 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQ 65
K SV TQVS+GGF + A +L YLE+EVG +WRCRLK S TP SYPNF I + + ++
Sbjct: 8 KNSVVTQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEIADTSNIR 67
Query: 66 KTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTS 125
+DY++VEPHAFVHF + AMDAA +L L+G+ LKVSLGPENP+ LNQR T+
Sbjct: 68 NFNDYKRVEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSLGPENPYTLNQRRRTT 127
Query: 126 APLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAE 185
PLKL + VEIG+LV++DEF VSWR A DFLVDPFD TC+FCFTK TAF+LK +
Sbjct: 128 TPLKLSGISVEIGTLVSRDEFLVSWR--AEKVDFLVDPFDNTCRFCFTKSTAFSLKDTMR 185
Query: 186 HAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLD 244
HAVI C++K+ LVR+I V+QY +LL LASSPR+ YRTA DDI P DLLD
Sbjct: 186 HAVINCDYKLELLVRDIRTVRQYRASDGFVLLLQLASSPRVWYRTADDDIYETCPVDLLD 245
Query: 245 DDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPVTIRE 283
DDDPWIRTTDF+ +GAIG+C S +QRV+E+ + P IR+
Sbjct: 246 DDDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDYLRRQRVKEERVRWPPRIRD 305
Query: 284 EPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIV 343
EP F V D FFC+H+KEG+SFEIMFLVN+V+H+G+LNQ QL++ FFDLLR QP++V +
Sbjct: 306 EPGFGEAVSDHFFCIHHKEGISFEIMFLVNSVLHRGVLNQFQLTERFFDLLRNQPKDVNI 365
Query: 344 TALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF- 402
+LKH+ +Y RPVFDAY++LK VQE ++KNPKL + DDI+E+RRLVITPT+AY
Sbjct: 366 ASLKHLCTYNRPVFDAYKRLKLVQEWVLKNPKLLVSHERSDDISEIRRLVITPTRAYCLP 425
Query: 403 ----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+ K V++RFLRVTFMDE +QTMN+NVLSY+VAPIVKD+TS+SFSQKT V
Sbjct: 426 PEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLSYFVAPIVKDLTSSSFSQKTHV 485
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI 512
FKRVK++L+DGF LCGR+YSFLAFSSNQLRD SAWFFS+ G T V DIK WMG+F KN+
Sbjct: 486 FKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSEDGNTRVSDIKIWMGKFKDKNV 545
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL 572
AK AARMGLCFSST+ATV++ P EVD ELP+I+RNGY FSDGIG I+PDLA EV + LKL
Sbjct: 546 AKCAARMGLCFSSTYATVDVMPHEVDTELPEIERNGYTFSDGIGTISPDLADEVMEKLKL 605
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGF 632
D P AYQIRYAG+KGVVA WP+K DGIR++LR SM KF S HT LEICSWTRFQPGF
Sbjct: 606 DVHYTPCAYQIRYAGFKGVVARWPSKGDGIRLALRHSMNKFHSKHTILEICSWTRFQPGF 665
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
LNRQII+LLS L V DEIFW +Q SM KLN +L DVAFEVLT SCAEQGNTAAIMLS
Sbjct: 666 LNRQIISLLSVLGVPDEIFWDMQESMLCKLNRILDDIDVAFEVLTTSCAEQGNTAAIMLS 725
Query: 693 AGFKPQTEPHLQGMLTY----------------------------ELGELKECQCFIQVS 724
AGFKP+ EPHL+GML+ E G L++ QCFIQVS
Sbjct: 726 AGFKPKIEPHLRGMLSSVRTAQLWGLREKSRIFVSSGRWLMGCLDEAGILEQGQCFIQVS 785
Query: 725 ESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCL 783
+ S+ENCFS+HGSRF E+K +QV+ G+V IAKNPCL PGDVRILEAVD P+LH + DCL
Sbjct: 786 KPSIENCFSRHGSRFKESKADMQVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHDMYDCL 845
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ 843
+FPQ GDRPHTNEASGSDLDGDLY+V WD+ LIPPS++S M+ A+ K L VNHQ
Sbjct: 846 IFPQNGDRPHTNEASGSDLDGDLYFVAWDQKLIPPSRESWHAMQYDAAKEKTLGRPVNHQ 905
Query: 844 N-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
+ LG ICNAHVVHADRSEYGA DE C+LLA+LAATAVD PKTGKIV+M
Sbjct: 906 DIIDFFVKNMANEHLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSM 965
Query: 891 PSHLKPKKYPDFMEIEEYQTYKSNK 915
P HLKPK YPDFM E+YQTY S K
Sbjct: 966 PFHLKPKLYPDFMGKEDYQTYLSKK 990
>gi|206598331|gb|ACI16098.1| RNA-directed RNA polymerase 6a [Hordeum vulgare]
Length = 1047
Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/1054 (52%), Positives = 713/1054 (67%), Gaps = 110/1054 (10%)
Query: 161 VDPFDGTCKFCFTKDTAFALKSSAEHAVI-KCEFKV-FLVREIDIVKQYSELPRVAILLW 218
VDPFDG+C+ F +DTAFA K E AV+ +C+ K+ F VR++ V+ + ++LL
Sbjct: 1 VDPFDGSCRLVFARDTAFAFKELREAAVVMRCDVKLEFPVRDVAEVRVFKL--DCSLLLR 58
Query: 219 LASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCN------------- 265
L++ P + YRTA DDI VPFDLLDDDDPWIRTTD +PSGAIG+C
Sbjct: 59 LSAVPLVYYRTADDDIHDSVPFDLLDDDDPWIRTTDITPSGAIGRCRVYRIAFPARFWSK 118
Query: 266 --------SKQRVQ-EDCLS-----QPVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFL 311
++RV +C + +T+R+EP+F ++D FFC+ + +G+ F ++FL
Sbjct: 119 MERALAYMGERRVTIVECGGGWGPRRGLTVRDEPEFGERMQDLFFCVQHAQGLKFPVLFL 178
Query: 312 VNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLI 371
VNA++HKG+++QHQL+ F+ LL+ + +V V ALK + K PVFDA +LK++Q+ +
Sbjct: 179 VNALVHKGVVSQHQLTPEFYGLLQRREDDVNVAALKEFWGIKFPVFDACRRLKNLQDRVA 238
Query: 372 KNPKLNEGPKNIDDIAEVRRLVITPTKAYWF-----------LESKDVADRFLRVTFMDE 420
+NPKL K DD +EVRRLVITPT AY +D ADRFL+VTFMDE
Sbjct: 239 RNPKLLHS-KIGDDHSEVRRLVITPTTAYCLPPQVERSNRVVRHYRDAADRFLKVTFMDE 297
Query: 421 GLQTMNANVLSYYVAPIVKDITSNSFSQ-KTGVFKRVKSILSDGFNLCGRRYSFLAFSSN 479
G+Q +N+NVL++ A IVKD+ SNSF Q KT V+KRVK+ L++GF++CGR+YSFLAFSSN
Sbjct: 298 GMQQLNSNVLNFSAAQIVKDLMSNSFLQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSN 357
Query: 480 QLRDHSAWFFS--KVGET-SVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTE 536
QLRD SAWFF+ + T +V I+ WMG FT+KN+AK+ ARMG CFSST+ATV + P E
Sbjct: 358 QLRDRSAWFFAEDRTDRTRTVESIRKWMGRFTSKNVAKHTARMGQCFSSTYATVVMHPHE 417
Query: 537 VDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWP 596
V+ L D++RNGYVFSDGIGKIT +LA+EVA+ L+L +PP SAYQIRYAG+KGV+A W
Sbjct: 418 VNECLEDVERNGYVFSDGIGKITQELALEVAKKLQLTDNPP-SAYQIRYAGFKGVIAVWE 476
Query: 597 AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA 656
++DGI++SLR SM KF+S HT LE+ SWT+FQPGFLNRQIITLLS+LNV D IF +Q
Sbjct: 477 GENDGIQLSLRPSMHKFESPHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQK 536
Query: 657 SMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY------- 709
M S LN +L +DVAF+V+T SCA++GNTAA+MLSAG P TEPHL+ +L
Sbjct: 537 DMLSNLNNILTDTDVAFDVVTTSCADEGNTAALMLSAGILPGTEPHLKALLLAIRSTQLL 596
Query: 710 ---------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAET-KKLQV 747
ELG L++ QCFI+ S L N KHG RF+ +
Sbjct: 597 GLLEKSRIFVPKGRWLMGCLDELGILEQGQCFIRASSPVLNNSLVKHGPRFSSANNNAET 656
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
I G VV+AKNPCL PGDVRILEA+D P LHHL DCLVFP+ G+RPH NEASGSDLDGDLY
Sbjct: 657 IVGTVVMAKNPCLHPGDVRILEAIDVPALHHLVDCLVFPKNGERPHANEASGSDLDGDLY 716
Query: 808 YVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHVV 854
+VTWDE LIPP KKS PM+ +PAEAK L V ++ LG I NAHVV
Sbjct: 717 FVTWDEKLIPPGKKSWNPMDYSPAEAKQLPRQVTQSDIVDFFLKNMVNEKLGPISNAHVV 776
Query: 855 HADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSN 914
HAD SEYGA DE CI LA+LAA AVD PKTGKIV+MP L+PK YPDFM ++ +YKS
Sbjct: 777 HADMSEYGAMDEKCIQLAELAAFAVDFPKTGKIVSMPPALRPKLYPDFMGKDDAISYKSE 836
Query: 915 KILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQL 974
KILGRLYR I+ A ++ +N D+ YDTD+EVPG+ DF + A KCSY+ QL
Sbjct: 837 KILGRLYRSIQEASSSDLVPEETCTLN--DLPYDTDMEVPGAADFLSSAWQCKCSYEAQL 894
Query: 975 NGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDF 1031
+ LL QY V + HIWS+PKYNSRKQG+++ERLK++YSA RKE+R +FE + +
Sbjct: 895 DALLKQYGVRTEAELVTEHIWSLPKYNSRKQGDIKERLKNAYSALRKEYRAIFESVEAPG 954
Query: 1032 E-----LSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL------EQGSARSVVLLSFA 1080
+ L D+E+N +YE KASAWYQVTYH +WV++S + L E AR LSFA
Sbjct: 955 QAKAVALDDDERNRVYEMKASAWYQVTYHPKWVERSREALLEPDREEDTPAR----LSFA 1010
Query: 1081 WIANDYLARIKIKCQEMANIGKSKPVNNLARYVA 1114
WI ++LARIK++C+ + + +PV LA Y++
Sbjct: 1011 WIPVEHLARIKLRCRGGVKVDRRRPVERLAAYMS 1044
>gi|242080895|ref|XP_002445216.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
gi|241941566|gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
Length = 1220
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1219 (46%), Positives = 749/1219 (61%), Gaps = 140/1219 (11%)
Query: 9 VDTQVSVGGFD-RDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKT 67
V T+VSVGGFD R +L YLE G VWRCR+KTSCTP SYP+F +
Sbjct: 9 VTTRVSVGGFDSRFTSPRELADYLEAVAGRVWRCRVKTSCTPPNSYPDFQCLPLLPAANA 68
Query: 68 --------------------DD-----------YEKVEPHAFVHFATSTYITRAMDAAEH 96
DD Y V PHAFVHF RA +
Sbjct: 69 HQPPPHYSSRARRRRAPDGEDDGALAFQAAPTPYNLVPPHAFVHFVHPEAARRAARSGIL 128
Query: 97 MELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASG 156
+ + + + + R + P + + VE+G+L D F VSWR P +
Sbjct: 129 VRASSSSQNKSSAAVRDRAVRRQ----NAKPFRFTNARVEVGNLWAPDAFVVSWRCPGNS 184
Query: 157 T-------DFLVDPFDGTCKFCFTKDTAFALKSSAEHAVI-KCEFKVFLVREIDIVKQYS 208
DF+VDP DG+C+ F++DTAFA +S E AV+ +C+FKV +D + +
Sbjct: 185 GSSASSGLDFVVDPLDGSCRLLFSRDTAFAFPASREAAVVLRCDFKVEFF--VDDIAELL 242
Query: 209 ELPRV-AILLWLASSPRICYRTAKDDIEVLVPFDLLDDDD--PWIRTTDFSPSGAIGQC- 264
P ++LL L+++P + YRTA D + VPFDLLDDDD PWIRTTD + SGAIG+C
Sbjct: 243 VFPTDDSLLLRLSAAPLLYYRTAADGVHQSVPFDLLDDDDDDPWIRTTDITASGAIGRCW 302
Query: 265 --------------------NSKQRVQE---DCLSQPVTIREEPDFEVPVEDPFFCMHYK 301
++RV D S + +EP+F P++D F C+ +
Sbjct: 303 MYRISFKTWFWPKMKDALAYMKEKRVPAVVCDIGSPGFRVHDEPEFGKPMQDLFLCVQHV 362
Query: 302 EGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYE 361
E + F ++FLVN ++HKGI+N+HQL+ FF LL+ + +V V AL + VFD
Sbjct: 363 EELQFSVLFLVNVLVHKGIVNEHQLTSKFFSLLKREEEQVNVAALTELLGENSQVFDVCW 422
Query: 362 KLKDVQECLIKNPKL----NEGPKNIDDIAEVRRLVITPTKAYWF---LESKD------- 407
+LK+VQ+ + KNPKL + G D A VRRLVITPT+AY +E +
Sbjct: 423 RLKNVQDWVAKNPKLIHPRSRGKVAGDYNAVVRRLVITPTRAYCMPPQVERSNRVIRHYH 482
Query: 408 -VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
VADRFLRVTFMDEG+Q +N N LS++ APIV+ + S F KT +++RV ++++ GF+L
Sbjct: 483 HVADRFLRVTFMDEGMQLLNNNALSFHAAPIVQSMMSKLFQHKTRIYRRVHTLMTKGFHL 542
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSST 526
CGR+YSFLAFSSNQ++D SAWFF++ G T+ I+ WMG+F ++N+AK+AARMGLCF+S+
Sbjct: 543 CGRKYSFLAFSSNQMKDRSAWFFAEEGTTTAATIREWMGQFPSRNVAKHAARMGLCFTSS 602
Query: 527 HATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA 586
+ATV P EV+ L DI+RNGY FSDGIGKITPDLA+EVA L L PPSAYQIRYA
Sbjct: 603 YATVVTRPNEVNELLEDIERNGYNFSDGIGKITPDLAIEVAARLPLIDRYPPSAYQIRYA 662
Query: 587 GYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNV 646
G+KGV+A WP ++DGIR+SLR SM+KF+S H+ +E+ SWT+FQP FLNRQII LL +L V
Sbjct: 663 GFKGVIAVWPGQNDGIRLSLRPSMRKFESTHSVIEVVSWTKFQPAFLNRQIIILLMSLGV 722
Query: 647 SDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM 706
+ IFW +Q +M L+ +L ++A++V+T SC E+G A +MLSAGF P TEPHL+ M
Sbjct: 723 PEAIFWEMQEAMLKNLDRILSDREIAYKVVTNSCPERGTIARLMLSAGFSPATEPHLKAM 782
Query: 707 LTY----------------------------ELGELKECQCFIQVSESSLENCFSKHGSR 738
L ELG L++ QCFIQ S S+ N F KHGSR
Sbjct: 783 LLAIKSSQLKGLLKKTKIFVPKGRWLMGCLDELGILEQGQCFIQASSLSINNHFMKHGSR 842
Query: 739 FAETKKLQV-INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
F+ K V I G VV+AKNPCL PGDVR+LEAVD PELHHL DCLVFP+KG+RPH NEA
Sbjct: 843 FSSANKNAVTIVGTVVVAKNPCLHPGDVRVLEAVDVPELHHLVDCLVFPKKGERPHPNEA 902
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHV-------------NHQN 844
SGSDLDGD+Y+VTWD+NL+PP K+S M+ +PAEAK L V +N
Sbjct: 903 SGSDLDGDVYFVTWDKNLVPPGKRSWKAMDYSPAEAKQLQRRVLQHDLIDFFLKNMASEN 962
Query: 845 LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME 904
+G+I NAHVVHAD SEYGA DE CI LA+LAATAVD PKTGKIV MP L+P KYPDFME
Sbjct: 963 IGRISNAHVVHADISEYGAMDEKCIQLAELAATAVDFPKTGKIVRMPPSLRPTKYPDFME 1022
Query: 905 IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEV-DINPVDIHYDTDLEVPGSVDFTADA 963
++ +YKS KI+G+LYR ++ Y + + S + D P YD DLEVPG+ F DA
Sbjct: 1023 KDDAISYKSEKIIGKLYRTVR-YYILGMPLESLIKDGMPA---YDIDLEVPGASHFFLDA 1078
Query: 964 RNQKCSYDGQLNGLLGQYN-VNRKEFRH--IWSMPKYNSRKQGELQERLKHSYSAFRKEF 1020
KC+Y+ +LN LL QY+ E IWS+ RK+ E E+ H+Y +EF
Sbjct: 1079 WQWKCAYESRLNALLNQYSGCTEAELVTGVIWSLADGRKRKKHEANEKFSHAYPELHQEF 1138
Query: 1021 RQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSF 1079
R+VFE + +D + +SD +KN++YE KASAWYQVTYH EW++ S + G R LSF
Sbjct: 1139 RRVFENIAADQDRMSDEKKNLVYEMKASAWYQVTYHPEWIRFSREKEPHGEERP-ARLSF 1197
Query: 1080 AWIANDYLARIKIKCQEMA 1098
WIA DYLA IK++C+ A
Sbjct: 1198 PWIAIDYLACIKMRCRGQA 1216
>gi|222618586|gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
Length = 1571
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/1100 (51%), Positives = 711/1100 (64%), Gaps = 127/1100 (11%)
Query: 103 GRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVD 162
G AL+V+ P++ R+++R AP + PDV +E+G+L F +WRGP +G D VD
Sbjct: 514 GEALRVASAPDSSLRVSRRSSI-APFRFPDVRLEVGALPWPGAFLAAWRGPDAGLDLSVD 572
Query: 163 PFDGTCKFCFTKDTAFALKSSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLAS 221
PFDG C+ FT+DTAF E A I+C+ K+ F VR++ V+ Y ++LL LA+
Sbjct: 573 PFDGCCRLVFTRDTAFTFPGFREVAAIRCDVKLEFPVRDVLEVRLYRL--DCSLLLRLAA 630
Query: 222 SPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCN---------------- 265
+P + YRTA DD VPFDLLDDDDPWIRTTD +PSGAIG+C
Sbjct: 631 APLVHYRTADDDFHEPVPFDLLDDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDR 690
Query: 266 -----SKQRVQ-EDCLS-----QPVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNA 314
++RV DC + +T+R+E +F P++D FFC+ + EG+ F ++F+VNA
Sbjct: 691 ALDYMRERRVAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNA 750
Query: 315 VMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNP 374
++HKGI+NQHQL+ FF LL V V AL+ + K PVFDA +LK + +NP
Sbjct: 751 LVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNP 810
Query: 375 KLNEGPKNIDDIAEVRRLVITPTKAYWF-----------LESKDVADRFLRVTFMDEGLQ 423
KL K DD AEVRRLVITPT+AY +VADRFLRVTFMDEG+Q
Sbjct: 811 KL-LCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQ 869
Query: 424 TMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRD 483
+N NVL+ + APIVKD+ SN F QKT V+KRV+ +L++GF++CGR+YSFLAFSSNQLRD
Sbjct: 870 VLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRD 929
Query: 484 HSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD 543
SAWFF++ +T+V I+ WMG FT+KN+AK+AARMG CFSST+ATV + P EVD D
Sbjct: 930 KSAWFFAEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDD 989
Query: 544 IKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR 603
+ N Y+FSDGIGKITPDLA+EVA+ L+L + PPSAYQIR+AG+KGV+A W DG R
Sbjct: 990 VVHNEYIFSDGIGKITPDLALEVAERLQLTDN-PPSAYQIRFAGFKGVIAVWQGHGDGTR 1048
Query: 604 MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
+ LR SM+KF+S H LE+ SWT+FQPGFLNRQII LLS+LNV D IFW +Q +M S LN
Sbjct: 1049 LFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLN 1108
Query: 664 LMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------------- 709
+L DVAFEVLT SCA+ GNTAA+MLSAGF+P+TEPHL+ ML
Sbjct: 1109 NILSDRDVAFEVLTTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKAR 1168
Query: 710 --------------ELGELKECQCFIQVSESSLENCFSKHGSRFAET-KKLQVINGFVVI 754
ELG L++ QCFI+ + SL + F KHGSRF+ T K +VI G V
Sbjct: 1169 IFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTV-- 1226
Query: 755 AKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
KG+RPH NEASGSDLDGDLY+VTWDE
Sbjct: 1227 ---------------------------------KGERPHANEASGSDLDGDLYFVTWDEK 1253
Query: 815 LIPPSKKSCPPMECTPAEAKPLTCHVNH-------------QNLGQICNAHVVHADRSEY 861
LIPP KKS PM+ +P EAK L V+ +NLG+ICNAHVVHAD SEY
Sbjct: 1254 LIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEY 1313
Query: 862 GAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLY 921
GA DE CI LA+LAATAVD PKTGK+ MP HLKPK YPDFM E+ Q+YKS KILGRLY
Sbjct: 1314 GAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLY 1373
Query: 922 RQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY 981
R I+ A + ++ VS EV P D+ YD DLEVPG+ DF A A KCSYD QL+ LL QY
Sbjct: 1374 RSIQEASNGDV-VSQEV-CTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQY 1431
Query: 982 NVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD-FELSDNE 1037
V + HI + K +S+KQG++++RLK +YSA RKEF+ FE + SD E+ D+E
Sbjct: 1432 RVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDE 1491
Query: 1038 KNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEM 1097
KN+LYE KASAWYQVTYH +WV+KS +L LSFAWI DYLARIK++C
Sbjct: 1492 KNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGK 1551
Query: 1098 ANIGKSKPVNNLARYVADRI 1117
+ KPV LA Y+++RI
Sbjct: 1552 VRVEGQKPVERLAAYISERI 1571
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 233/527 (44%), Positives = 306/527 (58%), Gaps = 84/527 (15%)
Query: 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTD 68
V TQVS+GGFD + A DL +LE+EVG VWRCR+KTS TP
Sbjct: 28 VTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTP------------------- 68
Query: 69 DYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPL 128
P ++ FA T A AA R + AP
Sbjct: 69 ------PDSYPDFALPTAPASASAAAAPPRSLRVSRRSSI-----------------APF 105
Query: 129 KLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAV 188
+ PDV +E+G+L + F +WRGP +G D VDPFDG C+ FT+DTAF E A
Sbjct: 106 RFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFREVAA 165
Query: 189 IKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLDDDD 247
I+C+ K+ F VR++ V+ Y ++LL LA++P + YRTA DD VPFDLLDDDD
Sbjct: 166 IRCDVKLEFPVRDVLEVRLYRL--DCSLLLRLAAAPLVHYRTADDDFHEPVPFDLLDDDD 223
Query: 248 PWIRTTDFSPSGAIGQCN---------------------SKQRVQ-EDCLS-----QPVT 280
PWIRTTD +PSGAIG+C ++RV DC + +T
Sbjct: 224 PWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGPRRGLT 283
Query: 281 IREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPRE 340
+R+E +F P++D FFC+ + EG+ F ++F+VNA++HKGI+NQHQL+ FF LL
Sbjct: 284 VRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEEN 343
Query: 341 VIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAY 400
V V AL+ + K PVFDA +LK + +NPKL K DD AEVRRLVITPT+AY
Sbjct: 344 VNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKL-LCSKVGDDHAEVRRLVITPTRAY 402
Query: 401 WF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQK 449
+VADRFLRVTFMDEG+Q +N NVL+ + APIVKD+ SN F QK
Sbjct: 403 CLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQK 462
Query: 450 TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS 496
T V+KRV+ +L++GF++CGR+YSFLAFSSNQLRD SAWFF++ +T+
Sbjct: 463 TTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTT 509
>gi|242093792|ref|XP_002437386.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
gi|241915609|gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
Length = 1239
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/1199 (46%), Positives = 725/1199 (60%), Gaps = 139/1199 (11%)
Query: 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV--AEV 64
T + T+ + GFD + A L LE+ G VWRCR+KTS TP +SYP+F + + A V
Sbjct: 56 TGLATRAILTGFDAGLSARGLADDLEHVAGTVWRCRVKTSITPPKSYPDFHLPAILAAAV 115
Query: 65 QKTDD---YEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
D + +V PHAFVHF + AA H G K+ + +N + L+ R
Sbjct: 116 LHPDGPSRHGRVAPHAFVHF-------EQLKAANHA-----GDFFKMRISAQNTYLLHGR 163
Query: 122 ------GGTSA--PLKLPDVYVEIGSLVTQDEFFVSWRG---PASGTDFLVDPFDGTCKF 170
GGT P+ PD VE G +V D FFV+WRG AS DF+VDP G C+
Sbjct: 164 AACPRDGGTDMRRPMLFPDSCVEFGDIVPPDTFFVAWRGTDHSASAVDFIVDPSVGCCRL 223
Query: 171 CFTKDTAFALKSSAEHAV------IKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPR 224
F++DTAF IK EF V V E+ + + L +L L+++P
Sbjct: 224 LFSRDTAFTFPDLCRRPTVVLCCDIKLEFSVSNVAEVLVFEADDSL-----ILRLSAAPL 278
Query: 225 ICYRTAKDDIEVLVPFDLLD-DDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPV---- 279
+ YRTA DD++ VPF L+D DDDPWIRTTD +PSGAIG+C S RV + P
Sbjct: 279 VYYRTAGDDVQDRVPFHLIDTDDDPWIRTTDVTPSGAIGRC-SAYRVSFGAMFWPTMRTA 337
Query: 280 ---------------------TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHK 318
T+ EEPDF P++ FF + E + F ++LVN ++H
Sbjct: 338 LKYMERQGVPVDVRDSRWLGFTVLEEPDFGRPMQHVFFSLRQDEDLWFPELYLVNVLIHN 397
Query: 319 GILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVF-DAYEKLKDVQECLIKNPKL- 376
I+N HQL+ FF LLR +V V AL ++ K V + +LK+ Q+ KN L
Sbjct: 398 RIVNLHQLTSEFFSLLRRAHEDVNVAALTELFGAKLQVCSNPCSRLKNAQDRATKNLNLL 457
Query: 377 -NEGPKNIDDI-AEVRRLVITPTKAYWF---LESKD--------VADRFLRVTFMDEGLQ 423
+ + + D AEVRRL+ITPT+ Y LE + ++DRFLRV F+DEG+
Sbjct: 458 FHGSSRKLGDFNAEVRRLIITPTRTYCMPPQLERSNRVTRHYHQLSDRFLRVAFVDEGML 517
Query: 424 TMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRD 483
+NAN LS V P+VKD+ S+ Q T V++RV++IL++GF +CGR+YSFLAFS++QL+
Sbjct: 518 PLNANALSLQVVPLVKDLMSSPTQQMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQ 577
Query: 484 HSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD 543
SAWFF++ G T+V +K WMG+F +N AK+AARMGLCF+S++ATV + P EVD L D
Sbjct: 578 KSAWFFAEDGTTTVASMKEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPCEVDEYLED 637
Query: 544 IKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR 603
+ NGY FSDGIG IT DLA+EVA+ L+L PS YQIRYAG+KGVVA ++DG+R
Sbjct: 638 VIHNGYNFSDGIGMITQDLALEVAKRLQLTDIYAPSTYQIRYAGFKGVVAVSTGQNDGMR 697
Query: 604 MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
MSLR SM+KF+S H+ LE+ SWT+FQP FLNRQIITLL++L V D +FW +Q +M L
Sbjct: 698 MSLRPSMRKFESAHSVLEVLSWTKFQPSFLNRQIITLLTSLGVPDAVFWQMQEAMLGNLK 757
Query: 664 LMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------------- 709
+L ++VA+EV+T SC E G+TA +MLSAGF P TEPHL+ ML
Sbjct: 758 RILSDNNVAYEVVTNSCPEHGSTAGLMLSAGFAPATEPHLRAMLLAICASQMQGLLDKTR 817
Query: 710 --------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKK--LQVINGFVV 753
ELG L++ QCFIQVS SL NC+ GS F K ++I G VV
Sbjct: 818 IFVPKGRWLMGCLDELGILEQGQCFIQVSTPSLNNCYVNRGSIFPSEYKNNAEIIVGTVV 877
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
+AKNPCL PGDVRILEAVD PELHHL DCLVFPQKG+RPH NEASGSDLDGD+Y+VTWDE
Sbjct: 878 MAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDIYFVTWDE 937
Query: 814 NLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-------------NLGQICNAHVVHADRSE 860
NL+PP ++S PM+ PA+ K L V+ NLG+ICNAHVVHADRS+
Sbjct: 938 NLVPPGRQSGTPMDYFPAKTKQLPREVHQSDIIDFYLESMVNDNLGRICNAHVVHADRSD 997
Query: 861 YGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRL 920
GA D CI LAKLAA AVDS KTG+IV MP L PK+YPDFM + +YKS KILGRL
Sbjct: 998 DGAMDPKCIQLAKLAAIAVDSAKTGEIVRMPPSLSPKEYPDFMGKGDAISYKSKKILGRL 1057
Query: 921 YRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQ 980
YR I ++ N + YD DLEVPG++ F DA KC Y+ QLN LL Q
Sbjct: 1058 YRSILRENGDDFVSQGTCISN--ETPYDIDLEVPGALSFLEDAWQCKCLYEAQLNTLLSQ 1115
Query: 981 YNVNRKEFR----HIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDN 1036
Y + R E IW + YN + Q +L+ER+ ++YS +EFR +FE + D DN
Sbjct: 1116 YGL-RSEAELVTGEIWPLVGYN-KYQYQLKERINYAYSKLHQEFRSIFESI--DISYCDN 1171
Query: 1037 EKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQ 1095
KN+ YE KASAWYQVTYH E+++ L E ++ LSFAWIA DYLA+IK KC
Sbjct: 1172 -KNLAYEMKASAWYQVTYHPEFIR----LREPDDEKTPARLSFAWIAVDYLAQIKKKCH 1225
>gi|242093794|ref|XP_002437387.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
gi|241915610|gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
Length = 1251
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/1203 (45%), Positives = 729/1203 (60%), Gaps = 136/1203 (11%)
Query: 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFI-------E 59
T T+V + GFD + A L LE+ G VWRCR+KTS TP ESYP+F + +
Sbjct: 62 TEPATRVVLTGFDAGLSARGLADDLEHLAGTVWRCRVKTSVTPPESYPDFQLPVHPADDD 121
Query: 60 NVAEVQKTDDYEK---VEPHAFVHFATSTYITRA-----MDAAEHMELFLNGRALKVSLG 111
+ A D+ + V PHAFVHF RA L+GRA +
Sbjct: 122 DAAVFHHQDEPSRHGVVAPHAFVHFEHPNAADRAGHFFRKRVPAQSSYLLHGRAAR---P 178
Query: 112 PENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQDEFFVSWRG------PASGTDFLVDPFD 165
P + + RG P+ PD +VE+G +V F V+WRG AS DF+VDP
Sbjct: 179 PRDGGTDDTRG---RPMLFPDSHVEVGDVVAPGTFLVAWRGTDDDSASASALDFVVDPSA 235
Query: 166 GTCKFCFTKDTAFALKSSAEHAVI------KCEFKVFLVREIDIVKQYSELPRVAILLWL 219
G C+ F +DTAF + K EF V V E+ + L LL L
Sbjct: 236 GCCRLLFARDTAFTFPDFHRRPAVLLCCDVKVEFSVADVAEVLAFEADDSL-----LLRL 290
Query: 220 ASSPRICYRTAKDDIEVLVPFDLLD-DDDPWIRTTDFSPSGAIGQCNS------------ 266
+++P + YRTA DD+ VPF +D DDDPWIRTTD +PSGAIG+C++
Sbjct: 291 SAAPLVYYRTAGDDVHDRVPFHQIDVDDDPWIRTTDVTPSGAIGRCSAYRVSFAARFWPT 350
Query: 267 ---------KQRVQED-CLSQ--PVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNA 314
KQ V D C S+ VT+ EEPDF P+ D FF + + EG+ F ++LVN
Sbjct: 351 MRAALEYMKKQGVPVDVCDSRCRGVTVLEEPDFGRPMLDVFFSLRHDEGLRFPELYLVNV 410
Query: 315 VMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYK--RPVFDAYEKLKDVQECLIK 372
++H GI+N HQL+ FF LLR +V V AL ++ K + D +LK+ Q K
Sbjct: 411 LIHNGIVNPHQLTSEFFSLLRRAQEDVNVAALTELFGTKLHQVCNDPCSRLKNAQVRAAK 470
Query: 373 NPKLNEGP--KNIDD--IAEVRRLVITPTKAYWF-----------LESKDVADRFLRVTF 417
N L + D + EVRRL+ITPT+AY + V+DRFLRVTF
Sbjct: 471 NLNLLSNSSSRKFGDYNVFEVRRLIITPTRAYCMPPQVERSNRVTRHYRQVSDRFLRVTF 530
Query: 418 MDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFS 477
+DEG+ +N++ LS +V P VKD S+S Q T V++RV++IL++GF +CGR+YSFLAFS
Sbjct: 531 VDEGMLPLNSHALSLHVVPFVKDSMSSSSQQMTTVYRRVQTILTEGFTMCGRKYSFLAFS 590
Query: 478 SNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEV 537
++QL+ SAWFF++ G T+V +K WMG+F +N AK+AARMGLCF+S++ATV + P EV
Sbjct: 591 TSQLKQKSAWFFAEDGTTTVASMKEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPCEV 650
Query: 538 DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPA 597
+ L D+ NGY FSDGIG IT DLA+EVA+ L L PSAYQIRYAG+KGVVA P
Sbjct: 651 NEYLEDVIHNGYNFSDGIGIITQDLALEVAKRLPLTDIYAPSAYQIRYAGFKGVVAVSPR 710
Query: 598 KDDGIRM-SLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA 656
+DG+RM SLR SM+KF+S H +E+ SWT+FQP FLNRQIITLL++L V D++FW +Q
Sbjct: 711 HNDGMRMMSLRPSMRKFESVHPVIEVVSWTKFQPAFLNRQIITLLTSLGVPDDVFWQMQE 770
Query: 657 SMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY------- 709
+M L +L +DVA++++T+SC E G+TA +ML+AGF P TEPHL+ ML
Sbjct: 771 AMLGNLKRILSNTDVAYKIVTSSCPEHGSTAGLMLTAGFAPATEPHLRAMLLAICASQMK 830
Query: 710 ---------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKK--LQ 746
ELG L++ QCFI+VS SL N + GS K +
Sbjct: 831 GLLDKTWIFVPKGRWLMGCLDELGILEQGQCFIRVSTPSLNNHYMNRGSISPSEYKNNAE 890
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
+I G VV+AKNPCL PGDVRILEAVD PELHHL DCLVFP+KG+RPH+NEASGSDLDGD+
Sbjct: 891 IIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHSNEASGSDLDGDV 950
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-------------NLGQICNAHV 853
Y+VTWDENL+PP +KSC PM+ +P+++K L V+ Q NLG+ICNAHV
Sbjct: 951 YFVTWDENLVPPGRKSCTPMDYSPSKSKQLPREVHQQDTIDFYLESMVNDNLGRICNAHV 1010
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKS 913
HADRS+ GA D C+ LA+LAA AVDS KTG+IV MP L PK+YPDFM E+ +YKS
Sbjct: 1011 AHADRSDDGAMDTKCVELAELAAIAVDSAKTGEIVKMPPSLSPKEYPDFMGKEDAISYKS 1070
Query: 914 NKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQ 973
KILGRLYR I + + + S+V + YDTDLEVPG++ F DA KC Y+ Q
Sbjct: 1071 KKILGRLYRSI--LMENSGDLLSQVTCISNENQYDTDLEVPGALSFLEDAWKCKCLYEAQ 1128
Query: 974 LNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD 1030
LN LL Q+ V+ + IWS+ YN + Q +L+ERL ++YS +EFR +FE ++
Sbjct: 1129 LNTLLNQFGVHSEAELVTGEIWSLVGYNKKYQYQLKERLNYAYSKLHQEFRSIFESIDVS 1188
Query: 1031 FELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARI 1090
+ + KN+ YE KASAWYQVTYH E+++ L E ++ LSFAWI DYLA+I
Sbjct: 1189 Y---GDSKNLAYEMKASAWYQVTYHPEFIR----LRELDDEKTPARLSFAWIPVDYLAQI 1241
Query: 1091 KIK 1093
K K
Sbjct: 1242 KKK 1244
>gi|413955011|gb|AFW87660.1| hypothetical protein ZEAMMB73_096378 [Zea mays]
Length = 1901
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1209 (44%), Positives = 711/1209 (58%), Gaps = 143/1209 (11%)
Query: 3 EREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIE--- 59
E T T+ + GFD + A L LE G VWRCR+KTS TP ESYP+F +
Sbjct: 714 EEWPTGPATRAILTGFDAGLSARGLADELERLAGTVWRCRIKTSVTPPESYPDFQLSVHA 773
Query: 60 ----NVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENP 115
V + +V PHAFVHF RA D F R L S +
Sbjct: 774 AAAAAVFHQDEPPRDGRVAPHAFVHFEHRNAADRAGD-------FFTTRILAQSRHLLHG 826
Query: 116 FRLNQRGGTS---APLKLPDVYVEIGSLVTQDEFFVSWRG---PASGTDFLVDPFDGTCK 169
+R G + P+ PD +EIG +V D F V+WRG AS DF+VDP G+C+
Sbjct: 827 HAARRRDGVTDAAKPMLFPDSRIEIGDVVAPDTFLVAWRGTDDSASALDFVVDPSGGSCR 886
Query: 170 FCFTKDTAFALKSSAEHAVIKC-----EFKVFLVREIDIVKQYSELPRVAILLWLASSPR 224
F + TAF A + C EF + V E + Q + +++L L+++P
Sbjct: 887 LLFARYTAFTCPDRRRPAALLCCDVKLEFALAHVAEA-LAFQADD----SLVLRLSAAPL 941
Query: 225 ICYRTAKDDIEVLVPFDLLD-DDDPWIRTTDFSPSGAIGQCNSKQ-----------RVQE 272
+ YRT+ DD+ VPF L+D DDDPWIRTTD + SGAIG+C + + RV
Sbjct: 942 VYYRTSGDDVHGRVPFQLVDADDDPWIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRVAL 1001
Query: 273 DCLSQ---PVTIR----------EEPDFEVPVEDPFFCMHYKE----GVSFEIMFLVNAV 315
+C+ + PV +R EE P+ D FF + + G+ F ++LVN +
Sbjct: 1002 ECMQRQGVPVHVRDRRCQGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPELYLVNVL 1061
Query: 316 MHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFD-AYEKLKDVQECLIKNP 374
MH G++N HQ++ FF LL +V V AL ++ K V D +LK+ Q+ KN
Sbjct: 1062 MHNGVVNPHQMTPEFFGLLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDKAAKNL 1121
Query: 375 KL-----NEGPKNIDDIAEVRRLVITPTKAYWF-----------LESKDVADRFLRVTFM 418
L + K D AEVRRL++TPT+ Y +++DRFLRVTF
Sbjct: 1122 DLVCRSSSSRRKASDCDAEVRRLIVTPTREYCMPPQVERSNRVIRHYHELSDRFLRVTFT 1181
Query: 419 DEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSS 478
DEG+ +N N L+ P T ++ Q T V++RV++ L++G +CGRRYSFLAFS+
Sbjct: 1182 DEGMLPLNPNALTLRAVPSTS--TPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSA 1239
Query: 479 NQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVD 538
+QL+ SAWFF++ G T+V IK WMG+F +N AK+AARMGLCF+S++ATV + P EVD
Sbjct: 1240 SQLKQKSAWFFAEDGATTVAGIKEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPGEVD 1299
Query: 539 HELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPA- 597
+L D+ RNGY FSDGIG IT DLA+EVA++L L PSAYQIRYAG+KGVVA P
Sbjct: 1300 EDLEDVTRNGYNFSDGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVSPPG 1359
Query: 598 ---KDDGIR-MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWT 653
+D G R MSLR SM+KF+S H LE+ SWT+FQP FLNRQIITLL+TL V D+ FW
Sbjct: 1360 PGQEDRGTRRMSLRPSMRKFESTHNVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDSFWQ 1419
Query: 654 VQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY---- 709
+Q +M KL +L SDVA+EV+T SC EQG+TA +ML AGF P TEPHL+ ML
Sbjct: 1420 LQEAMLGKLRRVLSDSDVAYEVVTNSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTS 1479
Query: 710 ------------------------ELGELKECQCFIQVSESSL-ENCFSKHG---SRFAE 741
E G L++ QCF++VS SL C ++ S +
Sbjct: 1480 QMQGLLNKTWIFVPKGRWLMGCLDEFGILEQGQCFLRVSTPSLGSRCVNRSPIFPSEYKG 1539
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSD 801
QVI G VV+AKNPCL PGDVRILEAVD P+L+HL DC VFP+KG+RPH +EASGSD
Sbjct: 1540 DANAQVITGTVVMAKNPCLHPGDVRILEAVDVPDLYHLVDCFVFPKKGERPHADEASGSD 1599
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-------------NLGQI 848
LDGD+Y+VTWDE+L+PP +KSC PM+ +PA+ K L V+ Q NLG+I
Sbjct: 1600 LDGDVYFVTWDESLVPPGRKSCTPMDYSPAKTKQLPHDVHQQDTIDFYLESMVYDNLGRI 1659
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY 908
CNAH HADRS+ GA D CI LA+LA+ AVDS KTG+IV MP L PK+YPDFM E+
Sbjct: 1660 CNAHAAHADRSDDGAMDPKCIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDA 1719
Query: 909 QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKC 968
+Y+S KILGRLYR + G D + +S I+ +I YD DLEVPG+ DF DA +C
Sbjct: 1720 ISYRSEKILGRLYRSVLGENDGDF-LSRGACISD-EIRYDADLEVPGASDFLQDAWRCRC 1777
Query: 969 SYDGQLNGLLGQYNVNRKEFR----HIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVF 1024
Y+ +LN LL QYNV R E IWS+ + + Q +L+ER+ ++YS +EFR +F
Sbjct: 1778 LYEARLNALLDQYNV-RSEAELVTGEIWSLAGCSKKYQHQLKERINYAYSKVHQEFRIIF 1836
Query: 1025 EKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIAN 1084
E + + S + KN+ YE KASAWYQVTYH E ++ E G + LSFAWIA
Sbjct: 1837 ESIGA----STDNKNLAYEMKASAWYQVTYHPEIIRSR----EPGDEDAPTRLSFAWIAV 1888
Query: 1085 DYLARIKIK 1093
DYLA+IK+K
Sbjct: 1889 DYLAQIKMK 1897
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/634 (38%), Positives = 338/634 (53%), Gaps = 97/634 (15%)
Query: 3 EREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIE--- 59
E T T+ + GFD + A L LE G VWRCR+KTS TP ESYP+F +
Sbjct: 65 EEWPTGPATRAILTGFDAGLSARGLADELERLAGTVWRCRIKTSVTPPESYPDFQLSVHA 124
Query: 60 ----NVAEVQKTDDYEKVEPHAFVHF--------ATSTYITRAMDAAEHMELFLNGRALK 107
V + +V PHAFVHF A + TR + + HM L+G A +
Sbjct: 125 AAAAAVFHQDEPPRDGRVAPHAFVHFEHRNAADRAGDFFTTRILAQSRHM---LHGHAAR 181
Query: 108 VSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQDEFFVSWRG---PASGTDFLVDPF 164
R + + P+ P+ +EIG +V D F V+WRG AS DF+VDP
Sbjct: 182 ---------RRDGVTDAAKPMLFPNSCIEIGDVVAPDTFLVAWRGTDDSASALDFVVDPS 232
Query: 165 DGTCKFCFTKDTAFALKSSAEHAVIKC-----EFKVFLVREIDIVKQYSELPRVAILLWL 219
G+C+ F + TAF A + C EF + V E + Q + +++L L
Sbjct: 233 GGSCRLLFARYTAFTCPDRRRPAALLCCDVKLEFALAHVAEA-LAFQADD----SLVLRL 287
Query: 220 ASSPRICYRTAKDDIEVLVPFDLLD-DDDPWIRTTDFSPSGAIGQCNSKQ---------- 268
+++P + YRT+ DD+ VPF L+D DDDPWIRTTD + SGAIG+C + +
Sbjct: 288 SAAPLVYYRTSGDDVHGRVPFQLVDADDDPWIRTTDVTRSGAIGRCLAYRVSFAVQFWPT 347
Query: 269 -RVQEDCLSQ---PVTIR----------EEPDFEVPVEDPFFCMHYKE----GVSFEIMF 310
RV +C+ + PV +R EE P+ D FF + + G+ F +++
Sbjct: 348 MRVALECMQRQGVPVHVRDRRCRGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPVLY 407
Query: 311 LVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECL 370
LVN +MH G++N HQ++ FF LL +V V AL ++ K V D
Sbjct: 408 LVNVLMHNGVVNPHQMTPEFFGLLMRTREDVNVAALTELFGAKLGVCD------------ 455
Query: 371 IKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVL 430
NP E ++ V R +++DRFLRVTF DEG+ +N N L
Sbjct: 456 --NPCWREYCMPVERSNRVIR------------HYHELSDRFLRVTFTDEGMLPLNPNAL 501
Query: 431 SYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS 490
+ P T ++ Q T V++RV++ L++G +CGRRYSFLAFS++QL+ SAWFF+
Sbjct: 502 TLRAVPSTS--TPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFA 559
Query: 491 KVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV 550
+ G T+V IK WMG+F +N AK+AARMGLCF+S++ATV + P EVD +L D+ RNGY
Sbjct: 560 EDGATTVAGIKEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPGEVDEDLEDVTRNGYN 619
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
FSDGIG IT DLA+EVA++L L PSAYQIR
Sbjct: 620 FSDGIGVITEDLALEVAEMLPLADRFAPSAYQIR 653
>gi|413954935|gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Zea mays]
Length = 1241
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1211 (44%), Positives = 714/1211 (58%), Gaps = 144/1211 (11%)
Query: 3 EREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIE--- 59
E T T+ + GFD + A L LE G VWRCR+KTS TP ESYP+F +
Sbjct: 51 EEWPTGPATRAILTGFDAGLSARGLADELERVAGTVWRCRIKTSVTPPESYPDFQLSVHT 110
Query: 60 NVAEVQKTDDYE-----KVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPEN 114
A V D E +V PHAFVHF RA D F R L S +
Sbjct: 111 AAAAVFHQDQDEPPRDGRVAPHAFVHFEHRNAADRAGD-------FFTTRILAQSRHLVH 163
Query: 115 PFRLNQRGGTS---APLKLPDVYVEIGSLVTQDEFFVSWRG---PASGTDFLVDPFDGTC 168
+R G + P+ PD +EIG +V D F V+WRG AS DF+VDP G+C
Sbjct: 164 GHAARRRDGVTDAAKPMLFPDSRIEIGDVVAPDTFLVAWRGTDDSASALDFVVDPSGGSC 223
Query: 169 KFCFTKDTAFALKSSAEHAVIKC-----EFKVFLVREIDIVKQYSELPRVAILLWLASSP 223
+ F + TAF A + C EF + V E + Q + +++L L+++P
Sbjct: 224 RLLFARYTAFTCPDRRRPAALLCCDVKLEFALAHVTEA-LAFQADD----SLVLRLSAAP 278
Query: 224 RICYRTAKDDIEVLVPFDLLD-DDDPWIRTTDFSPSGAIGQCNSKQ-----------RVQ 271
+ YRT+ DD+ VPF L+D DDDPWIRTTD + SGAIG+C + + RV
Sbjct: 279 LVYYRTSGDDVHGRVPFQLVDADDDPWIRTTDVTQSGAIGRCLAYRVSFAVQFWPTMRVA 338
Query: 272 EDCLSQ---PVTIR----------EEPDFEVPVEDPFFCMHYKE----GVSFEIMFLVNA 314
+C+ + PV +R EE P+ D FF ++ G+ F ++LVN
Sbjct: 339 LECMQRQGVPVHVRDRRCRGFTVLEEAGLVQPMRDAFFSPRHEHDDDAGLRFPELYLVNV 398
Query: 315 VMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFD-AYEKLKDVQECLIKN 373
+MH G++N HQ++ FF LL +V V AL ++ K V D +LK+ Q+ KN
Sbjct: 399 LMHNGVVNPHQMTPEFFGLLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDRAAKN 458
Query: 374 PKL-------NEGPKNIDDIAEVRRLVITPTKAYWF-----------LESKDVADRFLRV 415
L + K D AEVRRL++TPT+ Y +++DRFLRV
Sbjct: 459 LDLVCRSSSSSRRRKASDCDAEVRRLIVTPTREYCIPPQVERSNRVIRHYHELSDRFLRV 518
Query: 416 TFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLA 475
TF DEG+ +N N L+ P T ++ Q T V++RV++ L++G +CGRRYSFLA
Sbjct: 519 TFTDEGMLPLNPNALTLRAVPSTS--TPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLA 576
Query: 476 FSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPT 535
FS++QL+ SAWFF++ G T+V IK WMG+F +N AK+AARMGLCF+S++ATV + P
Sbjct: 577 FSASQLKQKSAWFFAEDGATTVAGIKEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPG 636
Query: 536 EVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACW 595
EVD +L D+ RNGY FSDGIG IT DLA+EVA++L L PSAYQIRYAG+KGVVA W
Sbjct: 637 EVDEDLEDVTRNGYNFSDGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVW 696
Query: 596 PA----KDDGIR-MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEI 650
P +D G R MSLR SM+KF+S HT LE+ SWT+FQP FLNRQIITLL+TL V D+
Sbjct: 697 PPGPGQEDRGTRRMSLRPSMRKFESTHTVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDA 756
Query: 651 FWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY- 709
FW +Q +M KL +L SDVA+EV+ SC EQG+TA +ML AGF P TEPHL+ ML
Sbjct: 757 FWQLQEAMLGKLRRVLSDSDVAYEVVINSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAI 816
Query: 710 ---------------------------ELGELKECQCFIQVSESSL-ENCFSKHG---SR 738
E G L++ QCF++VS S+ C ++ S
Sbjct: 817 CTSQMQGLLNKTWIFVPKGRWLMGCLDEFGILEQGQCFLRVSTPSVGSRCVNRSPIFPSE 876
Query: 739 FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS 798
+ QVI G VV+AKNPCL PGDVRILEAVD P+L+HL DC VFP+KG+RPH +EAS
Sbjct: 877 YKGDADAQVITGTVVMAKNPCLHPGDVRILEAVDVPDLYHLVDCFVFPKKGERPHADEAS 936
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-------------NL 845
GSDLDGD+Y+VTWDE+L+PP +KSC PM+ +PA+ K L V+ Q NL
Sbjct: 937 GSDLDGDVYFVTWDESLVPPGRKSCTPMDYSPAKTKQLPRDVHQQDTIDFYLESMVYDNL 996
Query: 846 GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEI 905
G+ICNAH HADRS+ GA D CI LA+LA+ AVDS KTG+IV MP L PK+YPDFM
Sbjct: 997 GRICNAHAAHADRSDDGAMDPKCIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGK 1056
Query: 906 EEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARN 965
E+ +Y+S KILGRLYR + G D + +S + I+ +I YD DLEV G+ DF DA
Sbjct: 1057 EDAISYRSEKILGRLYRSVLGENDGDF-LSRDACISD-EIRYDADLEVLGASDFLQDAWR 1114
Query: 966 QKCSYDGQLNGLLGQYNV-NRKEF--RHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQ 1022
+C Y+ +LN LL QY+V + E IWS+ + + +L+ER+ ++YS +EFR
Sbjct: 1115 CRCLYEARLNALLDQYDVCSEAELVTGEIWSLAGCSKKYHHQLKERINYAYSNLHQEFRS 1174
Query: 1023 VFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWI 1082
+FE +++ S + KN+ YE KASAWYQVTYH E ++ E G + LSFAWI
Sbjct: 1175 IFESIDA----STDNKNLAYEMKASAWYQVTYHPEIIRSR----EPGDEDAPTRLSFAWI 1226
Query: 1083 ANDYLARIKIK 1093
A DYLA+IK+K
Sbjct: 1227 AVDYLAQIKMK 1237
>gi|414877742|tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/898 (52%), Positives = 610/898 (67%), Gaps = 76/898 (8%)
Query: 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV-AEVQKT 67
V TQVS+GGFD +KA+DL +LE G VWRCRLKTS TP ++YP+F + V +
Sbjct: 20 VTTQVSLGGFDATVKALDLADFLELNAGSVWRCRLKTSWTPPDAYPDFLLPTVTSAAAPP 79
Query: 68 DDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAP 127
Y++V PHAFVHFA A DAA EL L+G+ L+ + ++ R + +P
Sbjct: 80 PQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAA-SAQDSSLRASRRRSVSP 138
Query: 128 LKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHA 187
+ P +E+G L D F +WRGPASG +F VDPFDG+C F F +DTAF ++ E
Sbjct: 139 FRFPGSRLEVGDLPASDAFIAAWRGPASGLEFSVDPFDGSCHFIFARDTAFKVREFRESV 198
Query: 188 VIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLDDD 246
V++C+ K+ F VR++ V+ + ++L+ L+++P +CYRTA DDI V VPFDLLDDD
Sbjct: 199 VMRCDVKLQFPVRDVAEVRVFRL--DCSLLIRLSAAPLVCYRTADDDIHVSVPFDLLDDD 256
Query: 247 DPWIRTTDFSPSGAIGQCNS---------------------KQRVQ-EDCLS-----QPV 279
DPWIRTTD +PSGAIG+C + +RV DC+ + +
Sbjct: 257 DPWIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALTYMRDRRVAILDCVGGWGARRGL 316
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
T+R+EP+F ++D FFC+ + EG+ F ++FLVNA++HKG+++QH L+ FF LL+ +
Sbjct: 317 TVRDEPEFGERMQDLFFCVQHAEGLKFPVLFLVNALVHKGVISQHHLTPEFFGLLQRKED 376
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDI-AEVRRLVITPTK 398
+V V AL+ + K PVFDA +LK++Q+ + + L I D+ +EVRRLVITPTK
Sbjct: 377 DVNVAALREFWGDKFPVFDACGRLKNLQDRVAR--YLKHLRNKIGDVNSEVRRLVITPTK 434
Query: 399 AYWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFS 447
AY +V+DRFLRVTFMDE +Q +N+NVL++ A IVKD+ SNSF
Sbjct: 435 AYCMPPEVERSNRVIRHYSEVSDRFLRVTFMDERMQMLNSNVLNFSAAQIVKDLMSNSFL 494
Query: 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF 507
KT V+KRVK+ L++GF++CGR+YSFLAFSSNQLRD SAWFF++ T+V I+ WMG F
Sbjct: 495 HKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTTTVETIRKWMGRF 554
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVA 567
T+KN+AK+AARMG CFSST+ATV + P EV+ L +++ NGY+FSDGIGKIT DLA+EVA
Sbjct: 555 TSKNVAKHAARMGQCFSSTYATVVLQPHEVNECLDEVEHNGYIFSDGIGKITCDLALEVA 614
Query: 568 QILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTR 627
Q L+L + PPSAYQIRYAG+KGV++ W K+DGIR+SLR SM KF+S HT LE+ SWT+
Sbjct: 615 QKLQLTDN-PPSAYQIRYAGFKGVISVWEGKNDGIRLSLRPSMHKFESNHTVLEVVSWTK 673
Query: 628 FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA 687
FQPGFLNRQIITLLS+LNV D IF +Q +M S LN +L SDVAF+++TASCAEQG TA
Sbjct: 674 FQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSDVAFDIVTASCAEQGTTA 733
Query: 688 AIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQC 719
A+MLSAG P TEPHL+ ML ELG L++ QC
Sbjct: 734 ALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQC 793
Query: 720 FIQVSESSLENCFSKHGSRF-AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
FI+ S SL NC K+GSR A + I G +V+AKNPCL PGDVRILEAVD PELHH
Sbjct: 794 FIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPCLHPGDVRILEAVDVPELHH 853
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
L DCLVFP+KG+RPH NEASGSDLDGDLY+VTWDENLIPP KKS PM+ +PAEAK L
Sbjct: 854 LVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPAEAKQL 911
>gi|106733035|gb|ABF82437.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
gi|106733051|gb|ABF82438.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
Length = 1152
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/1182 (37%), Positives = 626/1182 (52%), Gaps = 143/1182 (12%)
Query: 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDY 70
T+V V F +A DL YL + +G V R ++K
Sbjct: 4 TEVIVSNFPSSAEAADLAAYLRSVLGIVDRVKVK-------------------------- 37
Query: 71 EKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALK-VSLGPENPFRLNQRGGTSAPLK 129
+ P+AFV F ++T +A AE L LK V + + QRG ++
Sbjct: 38 QITRPYAFVKFLSATVAKQACHDAECGRLIFQDCKLKIVPCTSQGSSEVCQRGEV---IE 94
Query: 130 LPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVI 189
L V +++G+L+ +F +SWR P + G F+ D S
Sbjct: 95 LRRVQLQLGTLIGPQDFLLSWRVPGYECSLRISKKRGKTFLFFSYDKVM---SPNLQDTE 151
Query: 190 KCEFKVFL-VREI-DIVKQYSELPRVAILLWLASSPRICYRTAKDD-IEVLVPFDLLDDD 246
CEFK+ L V+E+ I Q +P + I++ L S P I YRT++ D + P L DD+
Sbjct: 152 PCEFKLELSVKEVRKIQTQRGRMPEMMIVMQLFSPPLISYRTSQGDGVYCTTPVPLPDDE 211
Query: 247 DPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPVTIREEP 285
DPWIRT DFSP +IG+C + +QR+ L + EE
Sbjct: 212 DPWIRTVDFSPHRSIGRCLTYIISVRPTEYTPFRRMMDFFMEQRLCGSVLQNLNFLYEEI 271
Query: 286 DFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTA 345
D + +F +H+++GV FE+MFLVNA++H+GI+N L+ F++ + R V + A
Sbjct: 272 DCKK--GQNYFFVHHQKGVPFELMFLVNALVHRGIINMTSLTQEFYETVMSD-RAVSLFA 328
Query: 346 LKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNID-DIAEVRRLVITPTKAYWFL- 403
L+H+ +Y PVF+A +++ VQE KN K +G K + + R++ TPT+ L
Sbjct: 329 LQHMLTYTHPVFNAVLRVQQVQEWTRKNDKFRQGEKALAFGSILMYRVLFTPTRGICTLP 388
Query: 404 ----------ESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVF 453
++DRFLRV+F+DE L ++ L+ V+ V+ ++S +T +
Sbjct: 389 VVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGSLTVPVSRSVRCLSSTYEYNRTEIH 448
Query: 454 KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIA 513
+R+ I+ +GF LCGR+YSFLAFSS+Q+R SAWFF+ G + I+ WMG+F ++N+A
Sbjct: 449 RRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFFASTGNVNTHLIRQWMGKFPSQNVA 508
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
KYAARMG CFS + T+ + V +LPD+ RNGY+FSDG G I PD A+ V+ LKLD
Sbjct: 509 KYAARMGQCFSCSFPTLPVLKAMV-RKLPDVVRNGYIFSDGCGMIAPDFALRVSLSLKLD 567
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFL 633
+P S YQIRYAGYKGVV+ WP + LR SMKKF+S HT LE+ +W+++ P +L
Sbjct: 568 YTP--SVYQIRYAGYKGVVSTWPIPGRHSHLGLRDSMKKFESGHTELEVVNWSKYLPCYL 625
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSA 693
NRQII LLSTL V + +F ++Q + ++L ML + A+E++T SC++ +TAA ML
Sbjct: 626 NRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPNQAYEIVTTSCSDSHSTAATMLRG 685
Query: 694 GFKPQTEPHLQGMLTY----------------------------ELGELKECQCFIQVSE 725
GF P EPHL +L E G L QCFI VS
Sbjct: 686 GFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMDETGLLNYGQCFIHVSG 745
Query: 726 SSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
+ C G+ + LQVI G V++ KNPCL PGD+RILEAVD PELH + DCLV
Sbjct: 746 PVSKACLGGDGNNLGHSGLLQVITGKVIMVKNPCLHPGDIRILEAVDLPELHSMVDCLVL 805
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN---- 841
PQ G RPH NE SGSDLDGD+Y+ WD NLIPPS +S PME ++K L N
Sbjct: 806 PQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWEPMEYAAHDSKILYRPANIKDV 865
Query: 842 ---------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
+ LG I NAHV AD+S GA D +C+ LA LA+ AVD PKTGK TMP
Sbjct: 866 KNFFVNSMMNDKLGFISNAHVARADKSPEGALDSDCLRLAHLASIAVDFPKTGKNATMPH 925
Query: 893 HLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH--YDTD 950
L+ ++PDFME E TY+SNK++G LYR + + D N VD+ YD D
Sbjct: 926 DLRVNEWPDFMEKEGAVTYQSNKVIGELYRSVTKFLKAEVEQHQHAD-NAVDLDSIYDYD 984
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNS-------RKQG 1003
L+VPG + DA +K SYD QL ++ +NV R E I S K S R +G
Sbjct: 985 LQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNVQR-EAALIASWLKRGSPGLRSVNRNRG 1043
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVL------------YEQKASAWYQ 1051
+ SY +EFR FE + + ++++ + KASAWY
Sbjct: 1044 ---DAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDMVESSSSEIKGPTDFAAKASAWYH 1100
Query: 1052 VTYHREWVKKSLDLLEQ-GSARSVVLLSFAWIANDYLARIKI 1092
VTYH EW +K+L++ E G + LLSF WI L+ IK+
Sbjct: 1101 VTYHPEWKQKALEIFENSGESSPRPLLSFPWITASVLSNIKL 1142
>gi|168067479|ref|XP_001785643.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162662723|gb|EDQ49541.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1049
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/1065 (39%), Positives = 587/1065 (55%), Gaps = 117/1065 (10%)
Query: 129 KLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAV 188
+L V +++G+L+ +F +SWR P + G F+ D S
Sbjct: 1 ELRRVQLQLGTLIGPQDFLLSWRVPGYECSLRISKKRGKTFLFFSYDKVM---SPNLQDT 57
Query: 189 IKCEFKVFL-VREI-DIVKQYSELPRVAILLWLASSPRICYRTAKDD-IEVLVPFDLLDD 245
CEFK+ L V+E+ I Q +P + I++ L S P I YRT++ D + P L DD
Sbjct: 58 EPCEFKLELSVKEVRKIQTQRGRMPEMMIVMQLFSPPLISYRTSQGDGVYCTTPVPLPDD 117
Query: 246 DDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPVTIREE 284
+DPWIRT DFSP +IG+C + +QR+ L + EE
Sbjct: 118 EDPWIRTVDFSPHRSIGRCLTYIISVRPTEYTPFRRMMDFFMEQRLCGSVLQNLNFLYEE 177
Query: 285 PDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVT 344
D + +F +H+++GV FE+MFLVNA++H+GI+N L+ F++ + R V +
Sbjct: 178 IDCKK--GQNYFFVHHQKGVPFELMFLVNALVHRGIINMTSLTQEFYETVMSD-RAVSLF 234
Query: 345 ALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNID-DIAEVRRLVITPTKAYWFL 403
AL+H+ +Y PVF+A +++ VQE KN K +G K + + R++ TPT+ L
Sbjct: 235 ALQHMLTYTHPVFNAVLRVQQVQEWTRKNDKFRQGEKALAFGSILMYRVLFTPTRGICTL 294
Query: 404 -----------ESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
++DRFLRV+F+DE L ++ L+ V+ V+ ++S +T +
Sbjct: 295 PVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGSLTVPVSRSVRCLSSTYEYNRTEI 354
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI 512
+R+ I+ +GF LCGR+YSFLAFSS+Q+R SAWFF+ G + I+ WMG+F ++N+
Sbjct: 355 HRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFFASTGNVNTHLIRQWMGKFPSQNV 414
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL 572
AKYAARMG CFS + T+ + V +LPD+ RNGY+FSDG G I PD A+ V+ LKL
Sbjct: 415 AKYAARMGQCFSCSFPTLPVLKAMV-RKLPDVVRNGYIFSDGCGMIAPDFALRVSLSLKL 473
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGF 632
D +P S YQIRYAGYKGVV+ WP + LR SMKKF+S HT LE+ +W+++ P +
Sbjct: 474 DYTP--SVYQIRYAGYKGVVSTWPIPGRHSHLGLRDSMKKFESGHTELEVVNWSKYLPCY 531
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
LNRQII LLSTL V + +F ++Q + ++L ML + A+E++T SC++ +TAA ML
Sbjct: 532 LNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPNQAYEIVTTSCSDSHSTAATMLR 591
Query: 693 AGFKPQTEPHLQGMLTY----------------------------ELGELKECQCFIQVS 724
GF P EPHL +L E G L QCFI VS
Sbjct: 592 GGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMDETGLLNYGQCFIHVS 651
Query: 725 ESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
+ C G+ + LQVI G V++ KNPCL PGD+RILEAVD PELH + DCLV
Sbjct: 652 GPVSKACLGGDGNNLGHSGLLQVITGKVIMVKNPCLHPGDIRILEAVDLPELHSMVDCLV 711
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN--- 841
PQ G RPH NE SGSDLDGD+Y+ WD NLIPPS +S PME ++K L N
Sbjct: 712 LPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWEPMEYAAHDSKILYRPANIKD 771
Query: 842 ----------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
+ LG I NAHV AD+S GA D +C+ LA LA+ AVD PKTGK TMP
Sbjct: 772 VKNFFVNSMMNDKLGFISNAHVARADKSPEGALDSDCLRLAHLASIAVDFPKTGKNATMP 831
Query: 892 SHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI----KGAYDENISVSSEVDINPVDIHY 947
L+ ++PDFME E TY+SNK++G LYR + K +++ + VD++ + Y
Sbjct: 832 HDLRVNEWPDFMEKEGAVTYQSNKVIGELYRSVTKFLKAEVEQHQHADNAVDLDSI---Y 888
Query: 948 DTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNS-------R 1000
D DL+VPG + DA +K SYD QL ++ +NV R E I S K S R
Sbjct: 889 DYDLQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNVQR-EAALIASWLKRGSPGLRSVNR 947
Query: 1001 KQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVL------------YEQKASA 1048
+G + SY +EFR FE + + ++++ + KASA
Sbjct: 948 NRG---DAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDMVESSSSEIKGPTDFAAKASA 1004
Query: 1049 WYQVTYHREWVKKSLDLLEQ-GSARSVVLLSFAWIANDYLARIKI 1092
WY VTYH EW +K+L++ E G + LLSF WI L+ IK+
Sbjct: 1005 WYHVTYHPEWKQKALEIFENSGESSPRPLLSFPWITASVLSNIKL 1049
>gi|226490831|ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
gi|194707104|gb|ACF87636.1| unknown [Zea mays]
Length = 552
Score = 587 bits (1514), Expect = e-164, Method: Compositional matrix adjust.
Identities = 304/551 (55%), Positives = 374/551 (67%), Gaps = 48/551 (8%)
Query: 610 MKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS 669
M KF+S HT LE+ SWT+FQPGFLNRQIITLLS+LNV D IF +Q +M S LN +L S
Sbjct: 1 MHKFESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDS 60
Query: 670 DVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------------------- 709
DVAF+++TASCAEQG TAA+MLSAG P TEPHL+ ML
Sbjct: 61 DVAFDIVTASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKG 120
Query: 710 --------ELGELKECQCFIQVSESSLENCFSKHGSRF-AETKKLQVINGFVVIAKNPCL 760
ELG L++ QCFI+ S SL NC K+GSR A + I G +V+AKNPCL
Sbjct: 121 RWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPCL 180
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
PGDVRILEAVD PELHHL DCLVFP+KG+RPH NEASGSDLDGDLY+VTWDENLIPP K
Sbjct: 181 HPGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGK 240
Query: 821 KSCPPMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDEN 867
KS PM+ +PAEAK L V+ + LG I NAHVVHAD SEYGA DE
Sbjct: 241 KSWNPMDYSPAEAKQLPRAVSQHDIVGFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEK 300
Query: 868 CILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGA 927
CI LA+LAATAVD PKTGKIV+MP+ L+PK YPDFM E+ +Y+S KILGRLYR I+ A
Sbjct: 301 CIQLAELAATAVDFPKTGKIVSMPASLRPKLYPDFMGKEDAISYRSEKILGRLYRSIQEA 360
Query: 928 YDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE 987
+++ N ++ YD D+EV G+ DF + A KCSY+ QLN LL QY V +
Sbjct: 361 SSDDLVPEETCTSN--NLPYDADMEVAGAADFLSSAWQCKCSYETQLNALLNQYGVRTEA 418
Query: 988 ---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD-FELSDNEKNVLYE 1043
HIWS+PKY+SR+QG+++ERLK++Y A KEFR +FE + +D E+SD+EK+ YE
Sbjct: 419 ELVTEHIWSLPKYSSRRQGDIKERLKNAYYALHKEFRSIFESIVTDQTEISDDEKSRFYE 478
Query: 1044 QKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKS 1103
KASAWYQVTYH EWV+KS ++ + LSFAWIA ++LARIKI+C+ +
Sbjct: 479 MKASAWYQVTYHPEWVQKSREMFKSDCEDMPARLSFAWIAVEHLARIKIRCRGEVKVDSP 538
Query: 1104 KPVNNLARYVA 1114
+PV LA Y++
Sbjct: 539 RPVERLAAYIS 549
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 367/1072 (34%), Positives = 555/1072 (51%), Gaps = 146/1072 (13%)
Query: 133 VYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCE 192
+ + G ++ + F V W+ F G KF F F S E+ K E
Sbjct: 100 ITLHFGCQMSDERFCVLWKAINVSVKF----GSGLRKFYF-----FLSHGSEEY---KLE 147
Query: 193 FKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRT 252
+ +I + ++ + +L+ L +P+I + D+ VL + DD W+R
Sbjct: 148 LSYENIWQIQLQHPRGQITKF-LLIQLLGAPQI----YEKDVPVLSYYFKEAPDDQWVRE 202
Query: 253 TDFSPSGAIGQCNSKQRVQEDCLSQPV-----TIRE------EPDFEVPVED-------- 293
DF+PS IGQ + CL P RE E D + +E
Sbjct: 203 IDFTPSCFIGQSFAL------CLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNL 256
Query: 294 ---PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ--PREVIVTALKH 348
P + F+I+F +N ++ G L+ L SFF L+ + P I AL+
Sbjct: 257 HLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEK 316
Query: 349 IYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNID-DIAEVRRLVITPTKAYWFLESKD 407
+Y K ++ L + +K P ++D + VRR+ ITP K Y+ +
Sbjct: 317 LYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVN 376
Query: 408 VADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRV 456
V++R FLRV+F+DE L+ +++ V+S ++ ++TGV++R+
Sbjct: 377 VSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMS---------KEGRRTGVYRRI 427
Query: 457 KSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKY 515
SIL +G + +++ FLAFSS+QLRD+SAW F+ + +I++WMG+F+ +N+AKY
Sbjct: 428 LSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKY 487
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILK 571
AAR+G FSS+ T+++ E+++ +PDI+ R YVFSDGIGKI+P LA VA
Sbjct: 488 AARLGQSFSSSKETLKVAKDEIEN-IPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCG 546
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPG 631
S P SA+QIRY GYKGVVA P ++SLR SM K++S +T+L++ +W+++QP
Sbjct: 547 CKSSTP-SAFQIRYGGYKGVVAVDPTSSR--KLSLRKSMFKYESDNTNLDVLAWSKYQPS 603
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML---VASDVAFEVLTASCAEQGNTAA 688
FLNRQ+ITLLSTL V D +F Q + +L+ +L VA+ A E++ S E N
Sbjct: 604 FLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELM--SPGENTNVLK 661
Query: 689 IMLSAGFKPQTEPHLQGML-TYELGELKECQCFIQV---SESSLENCF------------ 732
ML G+KP EP L ML T+ +L E + ++ + S+ C
Sbjct: 662 EMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVF 721
Query: 733 ---SKHGSR--FAETKKLQ---------VINGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
S G R F ++ + ++ G +V+AKNPCL PGDVR+L AV+ P LHH
Sbjct: 722 VQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHH 781
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-- 836
+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD +LIPP + + PM+ TPA K L
Sbjct: 782 MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQIN--PMDYTPAPTKVLDH 839
Query: 837 -----------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
T ++ + +LG I NAH V AD+ A+ + C LAKL + AVD PKTG
Sbjct: 840 DVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTG 899
Query: 886 KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
+P +L+ K+YPDFME + TY+S ++G+L+R++K N ++ S +
Sbjct: 900 VPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRS-FTRDVARQ 958
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQ 1002
YD D+EV G D+ +DA K YD +L L+ Y + + I M K R++
Sbjct: 959 SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRK 1018
Query: 1003 GELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKS 1062
E + + + RKE R F KM S+ +D+E + +Y KASAWY VTYH ++
Sbjct: 1019 D--AEAIGLAVKSLRKEARTWFNKMGSE---TDSEADDVY-AKASAWYHVTYHPDY---- 1068
Query: 1063 LDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVA 1114
+G R LSF W D L I K ++M+ G+S +++L R ++
Sbjct: 1069 WGCYNEGMDRD-HFLSFPWCVYDKL--IHTKRKKMS--GRSLHLSSLERRLS 1115
>gi|168044164|ref|XP_001774552.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162674107|gb|EDQ60620.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 843
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 321/862 (37%), Positives = 472/862 (54%), Gaps = 105/862 (12%)
Query: 309 MFLVNAVMHKGILNQHQLSDSFFDLLR--CQPREVIVTALKHIYSYKRPVFDAYEKLKDV 366
MF VN ++ L L F+ LL+ P E L+ + P +D +K++
Sbjct: 1 MFQVNQLLQTSKLIGETLDSRFYHLLQPDVTPHEQAKLVLERLGKRVGPCWDP---VKEI 57
Query: 367 QECLIKNPKLNEGPKNID-----DIAEVRRLVITPTKAYWFLESKDVA-----------D 410
QE L + P+++ + VRR+++TPTK Y D + D
Sbjct: 58 QEELGNMKETLSSPRSVSIKLASGMTWVRRVLVTPTKVYCTGPEVDTSNRVTRQFASHSD 117
Query: 411 RFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
RF+R++F+DE L+ +++ LS P ++++ ++ RV L +G + +
Sbjct: 118 RFMRMSFVDENLEPLSSVALS---VPRRGGAQDGVDAERSLLYNRVLKTLKEGIVIGDHK 174
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHAT 529
+ FLAFSS+QLR+HS W F+ + + I+ WMG+F T +N+AK AARMG CFSS+ T
Sbjct: 175 FEFLAFSSSQLREHSVWMFASYAQLTATMIRAWMGDFLTIRNVAKCAARMGQCFSSSKPT 234
Query: 530 VEIPPTEVDHELPDIKR------NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQI 583
+E+P EV+ ++PDI+R + Y FSDGIGKI+ + A EVA+ L+++ P SA+QI
Sbjct: 235 LEVPEQEVE-QIPDIEREDEFGMSKYCFSDGIGKISKEFAKEVAKRLQMEVVP--SAFQI 291
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
RY GYKGVVA P D ++SLR SM+KF S H L+I + +RF P +LNRQII LLST
Sbjct: 292 RYGGYKGVVAVDPHSD--FKISLRPSMRKFASKHVGLDILASSRFLPSYLNRQIILLLST 349
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI-MLSAGFKPQTEPH 702
L + D +F +Q M S+LN ML DVA ++L + A + +T I ML+AG++PQTEP
Sbjct: 350 LGIEDSVFEQMQHRMVSELNDMLKDGDVARDMLQINHAGEMHTRLIDMLAAGYQPQTEPF 409
Query: 703 LQGMLTY----------------------------ELGELKECQCFIQVSES-------- 726
++ +L E L + F+QV+ +
Sbjct: 410 VKMLLEAFRASQLVDLRKRSRILEPKGRVLMGCLDETKSLSYGEIFLQVTPALGRRKGLR 469
Query: 727 -SLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
LE S A V+ G+V++AKNPCL PGD+R L+AVD P L H+ DCLVF
Sbjct: 470 DGLETFDSYPIGSAANQNIAYVVTGWVIVAKNPCLHPGDIRKLKAVDGPGLRHMVDCLVF 529
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-- 843
PQKG RPH NE SGSDLDGDLY+V+WDE+LIP + PM+ T A L HV +
Sbjct: 530 PQKGHRPHPNECSGSDLDGDLYFVSWDEDLIPLNTDE--PMDYTSPGAMTLDHHVTIEEI 587
Query: 844 -----------NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
+LG I NAHVV+AD A C LAKL + AVD PKTG +P
Sbjct: 588 QEFFVKYMVTDSLGVISNAHVVNADIEPAMARSTACQELAKLVSLAVDFPKTGVPAIIPQ 647
Query: 893 HLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLE 952
+L+P KYPDFME + +TYKS ++LG+L+RQ+K A E + E+ ++ +D +
Sbjct: 648 NLRPTKYPDFMEKGDKETYKSERVLGKLFRQVKDASLEKLPC--EIPREDIERAFDPVMV 705
Query: 953 VPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERL 1009
+ G +F A+ K YD +L GL+ QY + + ++ ++ + +++ ++ ER+
Sbjct: 706 ITGYEEFIDMAKFHKNEYDRKLIGLMNQYGIETEAEAVSGYMLNLARQYVKRREDVVERI 765
Query: 1010 KHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQG 1069
+ + + E RQ F++ N+D + D+ +Y KASAWY VTYH E +K S
Sbjct: 766 RDAVRSLINEARQRFDE-NADDMVDDD----IY-AKASAWYHVTYHPEHIKVS-----AT 814
Query: 1070 SARSVVLLSFAWIANDYLARIK 1091
R V L+SF W+ + L +IK
Sbjct: 815 GRREVHLISFPWVIYNVLLQIK 836
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 336/922 (36%), Positives = 477/922 (51%), Gaps = 105/922 (11%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQP-----VTIRE--------------E 284
D DD W RTTDF+PS +IGQ CL P IRE +
Sbjct: 206 DTDDQWTRTTDFTPSASIGQSYIL------CLELPHICYLPNIREYFVYYEVHNDIFNLQ 259
Query: 285 PDFEVPVED---PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV 341
P + P HY V +EI+F +N ++ G L+ L D+F+ L+ +
Sbjct: 260 PGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYERI 319
Query: 342 --IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDD--IAEVRRLVITPT 397
I AL+ + K+ + L + + + ++ L +DD + V R+ ITP
Sbjct: 320 DRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTSPNITLDDDGLVYVYRVQITPA 379
Query: 398 KAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
K Y++ +V++R FLR++F+DE + + + LS AP +
Sbjct: 380 KVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDLSQRSAP-------GNN 432
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
+++T ++ RV S+LS+G + + + FLAFSS+QLRD+SAW F+ S DI+ WMG
Sbjct: 433 TRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGLSASDIREWMGN 492
Query: 507 F-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLA 563
F +N+AKYAAR+G FSS+ T+++ EV E PD+ NG YVFSDGIG I+ D A
Sbjct: 493 FRNIRNVAKYAARLGQSFSSSTETLKVHKYEVK-EAPDVT-NGTEYVFSDGIGTISADFA 550
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEIC 623
EV++ L P SA+QIRY GYKGVVA P ++SLR SM KF+S + +L++
Sbjct: 551 DEVSKKCNLTRFTP-SAFQIRYGGYKGVVAIDPTSQ--WKLSLRKSMSKFQSDNITLDVL 607
Query: 624 SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAE 682
+++++QP FLNRQ+ITLLSTL V D IF Q +LN M+ A + + E
Sbjct: 608 AYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAIDAIELMPMGE 667
Query: 683 QGNTAAIMLSAGFKPQTEPH----LQGMLTYELGELKECQCFIQVSESSLENCFS----- 733
N +L G++P EP+ LQ +L ELK ++ C
Sbjct: 668 ITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCLDETRTL 727
Query: 734 KHGSRF------AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
K+G F A+ + V+ G V++AKNPC+ PGD+RIL+AV P L H+ +C+VFPQ
Sbjct: 728 KYGQVFIQASNSADDRGKSVVTGKVIVAKNPCIHPGDIRILQAVHSPLLGHMVNCVVFPQ 787
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL----------- 836
G RPH NE SGSDLDGD+Y+V+WD +LIP + PM+ TPA + L
Sbjct: 788 LGPRPHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYTPAPTETLDHDVMIEEVHE 845
Query: 837 --TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
T ++ +++LG I NAHVV ADR A CI LA+L + AVD PKTG +P L
Sbjct: 846 YFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVPAQIPHEL 905
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVP 954
K+YPDFME + TY S ++G+LYR+IK + +V + YDTDL V
Sbjct: 906 HVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNPHIRHFTKDV----ATLSYDTDLIVD 961
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKH 1011
G D+ +A K YD +L L+ Y +N + I M K ++K RL
Sbjct: 962 GYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSDADAIRL-- 1019
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSA 1071
+ + RKE R F +M SD E D K ++ KASAWY VTYH ++ +G
Sbjct: 1020 AVKSLRKEARSWFSEMGSD-ESGDGHKALV--AKASAWYHVTYHPQY----WGCYNKGYD 1072
Query: 1072 RSVVLLSFAWIANDYLARIKIK 1093
L+SF W D L IK K
Sbjct: 1073 HRPHLISFPWCVYDKLILIKQK 1094
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 334/917 (36%), Positives = 475/917 (51%), Gaps = 95/917 (10%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIRE--------------EPDFEV 289
D DD W RTTDF+PS +IGQ P IRE +P +
Sbjct: 206 DTDDQWTRTTDFTPSASIGQSYILSLELPHICYLP-NIREYFVYYEVHNDIFNLQPGYSY 264
Query: 290 PVED---PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVT 344
P HY V +EI+F +N ++ G L+ L D+F+ L+ + I
Sbjct: 265 SSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYERIDRIKR 324
Query: 345 ALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDD--IAEVRRLVITPTKAYWF 402
AL+ + K+ + L + + + ++ L +DD + V R+ ITP K Y++
Sbjct: 325 ALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTSPNITLDDDGLVYVYRVQITPAKVYFY 384
Query: 403 LESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTG 451
+V++R FLR++F+DE + + + LS AP + +++T
Sbjct: 385 GPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDLSQRSAP-------GNNTRRTA 437
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAK 510
++ RV S+LS+G + + + FLAFSS+QLRD+SAW F+ S DI+ WMG F +
Sbjct: 438 LYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGLSASDIREWMGNFRNIR 497
Query: 511 NIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQ 568
N+AKYAAR+G FSS+ T+++ EV E PD+ NG YVFSDGIG I+ D A EV++
Sbjct: 498 NVAKYAARLGQSFSSSTETLKVHKYEVK-EAPDVT-NGTEYVFSDGIGTISADFADEVSK 555
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
L P SA+QIRY GYKGVVA P ++SLR SM KF+S + +L++ +++++
Sbjct: 556 KCNLTRFTP-SAFQIRYGGYKGVVAIDPTSQ--WKLSLRKSMSKFQSDNITLDVLAYSKY 612
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTA 687
QP FLNRQ+ITLLSTL V D IF Q +LN M+ A + + E N
Sbjct: 613 QPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAIDAIELMPMGEITNIV 672
Query: 688 AIMLSAGFKPQTEPH----LQGMLTYELGELKECQCFIQVSESSLENCFS-----KHGSR 738
+L G++P EP+ LQ +L ELK ++ C K+G
Sbjct: 673 KELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCLDETRTLKYGQV 732
Query: 739 F------AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRP 792
F A+ + V+ G V++AKNPC+ PGD+RIL+AV P L H+ +C+VFPQ G RP
Sbjct: 733 FIQASNSADDRGKSVVTGKVIVAKNPCIHPGDIRILQAVHSPLLGHMVNCVVFPQLGPRP 792
Query: 793 HTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCH 839
H NE SGSDLDGD+Y+V+WD +LIP + PM+ TPA + L T +
Sbjct: 793 HPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNY 850
Query: 840 VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY 899
+ +++LG I NAHVV ADR A CI LA+L + AVD PKTG +P L K+Y
Sbjct: 851 IVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVPAQIPHELHVKEY 910
Query: 900 PDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDF 959
PDFME + TY S ++G+LYR+IK + +V + YDTDL V G D+
Sbjct: 911 PDFMEKLDRATYVSEGVIGKLYREIKKQNPHIRHFTKDV----ATLSYDTDLIVDGYQDY 966
Query: 960 TADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAF 1016
+A K YD +L L+ Y +N + I M K ++K RL + +
Sbjct: 967 ITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSDADAIRL--AVKSL 1024
Query: 1017 RKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVL 1076
RKE R F +M SD E D K ++ KASAWY VTYH ++ +G L
Sbjct: 1025 RKEARSWFSEMGSD-ESGDGHKALV--AKASAWYHVTYHPQY----WGCYNEGYDHRPHL 1077
Query: 1077 LSFAWIANDYLARIKIK 1093
+SF W D L IK K
Sbjct: 1078 ISFPWCVYDKLILIKQK 1094
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 371/1105 (33%), Positives = 543/1105 (49%), Gaps = 154/1105 (13%)
Query: 77 AFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVE 136
A V F T + + ++AA L LKV E L R +A L D +
Sbjct: 52 AIVQFETEAHASLVVNAARGNALRSGSNYLKVRPA-ERDIILKPR---TALFNLEDATLH 107
Query: 137 IGSLVTQDEFFVSWRGPASGTDF--LVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCEFK 194
G L+ + V W G +F + D FC T + LK K E
Sbjct: 108 FGCLLRERVLSVLWSGTGVSVEFGFAMKKID----FCLT----YNLKK------YKLELS 153
Query: 195 VFLVREIDIVKQYSELPRVAILLWLASSPRI----CYRTAKDDIEVLVPFDLLDDDDPWI 250
+ EI + + +L+ + ++P+I + + + L + D DD W
Sbjct: 154 YESIWEIQLYHPPGSQKKF-LLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWT 212
Query: 251 RTTDFSPSGAIGQCNSKQRVQEDCLSQPV-----TIREEPDFEVPVEDPFFCM------- 298
RTTDF+P +IGQ CL P IRE + F CM
Sbjct: 213 RTTDFTPLASIGQSYIL------CLELPADCYLPNIREYFVYYKNHNHDFHCMRGHSYSS 266
Query: 299 ----------HYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKH 348
Y V +EI+F +N ++ GIL+ L D+F+ L+ P V + +KH
Sbjct: 267 NSCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYSLV--SPGYVCIDHIKH 324
Query: 349 IY---SYKR-----PVFDAYEKLKDVQ--ECLIKNPKLNEGPKNIDDIAEVRRLVITPTK 398
SY + P+ EK K++Q ++ +P + + D +A V R+ ITP K
Sbjct: 325 ALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNI---ALDDDGLAYVYRVQITPAK 381
Query: 399 AYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFS 447
Y++ +V++R FLR++F+DE + + + LS AP + +
Sbjct: 382 VYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLRSTDLSPRSAP-------GNNA 434
Query: 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF 507
+T ++ R+ S+LS+G + + + FLAFSS+QLRD+SAW F+ S DI+ WMG F
Sbjct: 435 SRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRTGLSASDIREWMGNF 494
Query: 508 -TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAM 564
+N+AKYAAR+G FS++ T+++ EV LP++ NG YVFSDGIG I+ D A
Sbjct: 495 RNIRNVAKYAARLGQSFSASTETLKVHKYEV-QALPEVT-NGTKYVFSDGIGTISADFAD 552
Query: 565 EVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICS 624
EV++ KL PSA+QIRY GYKGVVA P ++SLR SM KF S + +L++ +
Sbjct: 553 EVSRKCKL-ARFTPSAFQIRYGGYKGVVAIDPRSH--WKLSLRSSMSKFPSENITLDVLA 609
Query: 625 WTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQ 683
++++QP FLNRQ+ITLLSTL V D IF Q + +LN ++ A + + E
Sbjct: 610 YSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEI 669
Query: 684 GNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLENCFS-----K 734
N +L G++P EP+L +L +L ELK ++ C K
Sbjct: 670 TNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCLDETRTLK 729
Query: 735 HGSRFAETKKLQ------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
+G F + V+ G VV+AKNPCL PGD+RILEAV P L H+ +C+VFPQ+
Sbjct: 730 YGEVFIQASNSANESDKFVVTGKVVVAKNPCLHPGDIRILEAVYTPVLDHMVNCVVFPQQ 789
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL------------ 836
G RPH NE SGSDLDGD+Y+V+WD +LIP + PM+ TPA + L
Sbjct: 790 GPRPHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYTPAPTETLDHDVVIEEVHEY 847
Query: 837 -TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
++ +++LG I NAHVV AD+ A CI LA+L + AVD PKTG +PS L
Sbjct: 848 FANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSKLH 907
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIK------GAYDENISVSSEVDINPVDIHYDT 949
++YPDFME + TY S ++G+LYR+IK G + ++++ S YDT
Sbjct: 908 VREYPDFMEKLDRATYISKGVIGKLYREIKKQSPHIGHFTKDVARRS----------YDT 957
Query: 950 DLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQ 1006
DL V G D+ +A K YD +L L+ Y + + I M K N K +
Sbjct: 958 DLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAK-NFTKSSD-A 1015
Query: 1007 ERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL 1066
+ ++ + + RKE R F M++D +E + KASAWY VTYH E+ +
Sbjct: 1016 DAIRLAVKSLRKEARSWFSDMSADESGDVHEASY---AKASAWYHVTYHPEYYGCYNKIY 1072
Query: 1067 EQGSARSVVLLSFAWIANDYLARIK 1091
E+ L+SF W D L IK
Sbjct: 1073 ERPH-----LISFPWCVYDKLLHIK 1092
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 481 bits (1238), Expect = e-132, Method: Compositional matrix adjust.
Identities = 370/1105 (33%), Positives = 543/1105 (49%), Gaps = 154/1105 (13%)
Query: 77 AFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVE 136
A V F T + + ++AA L LKV E L R +A L D +
Sbjct: 52 AIVQFETEAHASLVVNAARGNALRSGSNYLKVRPA-ERDIILKPR---TALFNLEDATLH 107
Query: 137 IGSLVTQDEFFVSWRGPASGTDF--LVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCEFK 194
G L+ + V W G +F + D FC T + LK K E
Sbjct: 108 FGCLLRERVLSVLWSGTGVSVEFGFAMKKID----FCLT----YNLKK------YKLELS 153
Query: 195 VFLVREIDIVKQYSELPRVAILLWLASSPRI----CYRTAKDDIEVLVPFDLLDDDDPWI 250
+ EI + + +L+ + ++P+I + + + L + D DD W
Sbjct: 154 YESIWEIQLYHPPGSQKKF-LLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWT 212
Query: 251 RTTDFSPSGAIGQCNSKQRVQEDCLSQPV-----TIREEPDFEVPVEDPFFCM------- 298
RTTDF+P +IGQ CL P IRE + F CM
Sbjct: 213 RTTDFTPLASIGQSYIL------CLELPADCYLPNIREYFAYYKNHNHDFHCMRGHSYSS 266
Query: 299 ----------HYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKH 348
Y V +EI+F +N ++ GIL+ L D+F+ L+ P V + +KH
Sbjct: 267 NSCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYRLV--SPGYVCIDHIKH 324
Query: 349 I---YSYKR-----PVFDAYEKLKDVQ--ECLIKNPKLNEGPKNIDDIAEVRRLVITPTK 398
SY + P+ EK K++Q ++ +P + + D +A V R+ ITP K
Sbjct: 325 ALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNI---ALDDDGLAYVYRVQITPAK 381
Query: 399 AYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFS 447
Y++ +V++R FLR++F+DE + + + LS AP + +
Sbjct: 382 VYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLRSTDLSPRYAP-------GNNA 434
Query: 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF 507
+T ++ R+ S+LS+G + + + FLAFSS+QLRD+SAW F+ S DI+ WMG F
Sbjct: 435 SRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRTGLSASDIREWMGNF 494
Query: 508 -TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAM 564
+N+AKYAAR+G FS++ T+++ EV LP++ NG YVFSDGIG I+ D A
Sbjct: 495 RNIRNVAKYAARLGQSFSASTETLKVHKYEV-QALPEVT-NGTKYVFSDGIGTISADFAD 552
Query: 565 EVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICS 624
EV++ KL PSA+QIRY GYKGVVA P ++SLR SM KF S + +L++ +
Sbjct: 553 EVSRKCKL-ARFTPSAFQIRYGGYKGVVAIDPRSH--WKLSLRSSMSKFPSENITLDVLA 609
Query: 625 WTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQ 683
++++QP FLNRQ+ITLLSTL V D IF Q + +LN ++ A + + E
Sbjct: 610 YSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEI 669
Query: 684 GNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLENCFS-----K 734
N +L G++P EP+L +L +L ELK ++ C K
Sbjct: 670 TNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCLDETRTLK 729
Query: 735 HGSRFAETKKLQ------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
+G F + V+ G VV+AKNPCL PGD+RIL+AV P L H+ +C+VFPQ+
Sbjct: 730 YGEVFIQASNSANESDKFVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHMVNCVVFPQQ 789
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL------------ 836
G RPH NE SGSDLDGD+Y+V+WD +LIP + PM+ TPA + L
Sbjct: 790 GPRPHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYTPAPTETLDHDVVIEEVHEY 847
Query: 837 -TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
++ +++LG I NAHVV AD+ A CI LA+L + AVD PKTG +PS L
Sbjct: 848 FANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSELH 907
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIK------GAYDENISVSSEVDINPVDIHYDT 949
++YPDFME + TY S ++G+LYR+IK G + ++++ S YDT
Sbjct: 908 VREYPDFMEKLDRATYISKGVIGKLYREIKKQSPHIGHFTKDVARRS----------YDT 957
Query: 950 DLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQ 1006
DL V G D+ +A K YD +L L+ Y + + I M K N K +
Sbjct: 958 DLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAK-NFTKSSD-A 1015
Query: 1007 ERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL 1066
+ ++ + + RKE R F M++D +E + KASAWY VTYH E+ +
Sbjct: 1016 DAIRLAVKSLRKEARSWFSDMSADESGDVHEASY---AKASAWYHVTYHPEYYGCYNKIY 1072
Query: 1067 EQGSARSVVLLSFAWIANDYLARIK 1091
E+ L+SF W D L IK
Sbjct: 1073 ERPH-----LISFPWCVYDKLLHIK 1092
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 481 bits (1238), Expect = e-132, Method: Compositional matrix adjust.
Identities = 370/1126 (32%), Positives = 550/1126 (48%), Gaps = 175/1126 (15%)
Query: 75 PHAF--VHFATSTYITRAMDAAEHM-------ELFLNGRALKVSLGPENPFRLNQRGGTS 125
P AF + F T+ T M A ++ +L R ++ + P L+
Sbjct: 45 PRAFAIIQFTTANSATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHS----- 99
Query: 126 APLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAE 185
L DV + G +++ F V W+ D +V+ G K F S
Sbjct: 100 ----LDDVKLSFGCQISKGRFSVLWKK----QDVIVNFGSGMRKMHFL--------FSHN 143
Query: 186 HAVIKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVP--FDLL 243
+ K E + +I++ + +E R +L+ L +PR+ + F+
Sbjct: 144 NVQYKLELSYENIWKIELHRPRNETTRY-LLIQLLGAPRVFENDVPTSTNIFDDPLFNFF 202
Query: 244 DD--DDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFE------------- 288
D D+ WIR DF+P IGQ ++ CL P R+ P+F
Sbjct: 203 KDAPDEQWIRAIDFTPESRIGQSSAI------CLELP-NGRQLPNFRENFAYYEESERQY 255
Query: 289 -----VPVED-----PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLL--RC 336
VP P +S++I+F VN+++ L L F+ L+ R
Sbjct: 256 TLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAGPALDGDFYRLVDPRR 315
Query: 337 QPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDD--IAEVRRLVI 394
PRE I AL+ IY K ++ + L D + +++ P D + VRR+ I
Sbjct: 316 MPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAISLDTGLVYVRRVQI 375
Query: 395 TPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITS 443
TP K Y+ +V++R FLRV+F+DE L + + D++S
Sbjct: 376 TPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFST-----------DLSS 424
Query: 444 NSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF--SKVGETSVLDIK 501
S ++KT ++ R+ SIL +G + +++ FLAFSS+QLR++S W F ++ G T+ I+
Sbjct: 425 RSQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETGCTAAY-IR 483
Query: 502 NWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKR-----NGYVFSDGI 555
WMG F+ +N+AKYAAR+G F S+ T+ + EV+ +PD+K+ N YVFSDGI
Sbjct: 484 KWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEI-IPDVKKLTYDGNEYVFSDGI 542
Query: 556 GKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS 615
GKI+ + A +VA+ D + PSA+QIRY GYKGVVA P ++SLR SM+K+ S
Sbjct: 543 GKISLEFAQKVAKKCGYDCT--PSAFQIRYGGYKGVVAVDPK--SCYKLSLRKSMRKYDS 598
Query: 616 CHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV 675
+T L++ + ++FQP +LNRQ+I+LLSTL + D++F Q ++LN +L S A EV
Sbjct: 599 DNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKAQEV 658
Query: 676 L-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGELKEC---------------- 717
L S E N ML G+KP EP L ML T+ +L E
Sbjct: 659 LDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMG 718
Query: 718 -----------QCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVR 766
Q F+Q S + L+N S + K ++ G VV+AKNPCL PGDVR
Sbjct: 719 CLDETRTLEYGQVFVQFSNNRLQNLSDDFFS--YDLPKNYMVKGKVVVAKNPCLHPGDVR 776
Query: 767 ILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
+L+AVD P+L+H+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD LIP + PM
Sbjct: 777 VLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIP--SRPIDPM 834
Query: 827 ECTPAEAKPLTCHVNH-----------------QNLGQICNAHVVHADRSEYGAFDENCI 869
+ T P T ++H +LG I NAH V AD+ A + C+
Sbjct: 835 DYT----APATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCV 890
Query: 870 LLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYD 929
LA+L +TAVD PKTG +P L K+YPDFME + TYKS+ ++G+L+R++K
Sbjct: 891 KLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEIST 950
Query: 930 ENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE-- 987
S++S + D YD ++EV G +D+ DA K +YD +L L+ Y + +
Sbjct: 951 SAGSITSFTKLVARD-SYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEI 1009
Query: 988 -FRHIWSMPK-YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQK 1045
+I M K +N R+ E + + + RKE R F N + + + K
Sbjct: 1010 LGGNIMKMSKSFNKRRDAEA---INMAVRSLRKEARAWF---NENSSGDVDSGSSDVYAK 1063
Query: 1046 ASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
ASAWY VTYH + +G R LSF+W L +IK
Sbjct: 1064 ASAWYHVTYHPSY----WGCYNEGMNRD-HYLSFSWCVYPLLVQIK 1104
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 348/1032 (33%), Positives = 535/1032 (51%), Gaps = 119/1032 (11%)
Query: 133 VYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCE 192
V V G V++++F+V W+ +F GT + F L + + K E
Sbjct: 99 VTVNFGCQVSEEKFYVLWKADNVTLNF------GTG----MRKLEFLLSYCS--SKYKLE 146
Query: 193 FKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLD-----DDD 247
+ +I++ +S+ + +L+ L +PRI Y E + LL+ DD
Sbjct: 147 LFYENIWQIELRCPHSQTSK-HLLIQLFGAPRI-YEKEVPASECVFDDPLLNYFKDMPDD 204
Query: 248 PWIRTTDFSPSGAIGQCNS-----KQRVQEDCLSQPVTIREEPDFEVPVED--------- 293
W+RTTDF+ S IGQ + +Q + +E + + +E
Sbjct: 205 QWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLS 264
Query: 294 --PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR-CQPREVIVT-ALKHI 349
P C + FEI+F VN ++ G + L D+F+ L+ C+ +V + AL+ +
Sbjct: 265 LVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKL 324
Query: 350 YSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKD 407
Y + ++ L + + ++ K P ++D+ + VRR+ ITP++ Y+ +
Sbjct: 325 YYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEIN 384
Query: 408 VADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRV 456
V++R FLR++F+DE L+ +++ + ++TG++KR+
Sbjct: 385 VSNRVLRQFHNDIDNFLRISFVDEELEKIHST-------------NVQARGRRTGIYKRI 431
Query: 457 KSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKY 515
S L +G + +R+ FLAFSS+QLR++SAW F+ + DI++WMG F+ +N+AKY
Sbjct: 432 LSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKY 491
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIK--RNG--YVFSDGIGKITPDLAMEVAQILK 571
AAR+G FSS+ T+ + E++ +PDI+ ++G YVFSDGIGKI+ + A +VA +
Sbjct: 492 AARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCR 550
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPG 631
L G P SA+QIR G+KGVVA P ++SLR SM+K++S +T L++ +W+++QP
Sbjct: 551 LKGCTP-SAFQIRIGGFKGVVAIDPT--SSWKLSLRKSMEKYESENTKLDVLAWSKYQPC 607
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIM 690
FLNRQ+ITLLSTL V D F Q + +LN +L A E L S E N M
Sbjct: 608 FLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEM 667
Query: 691 LSAGFKPQTEPHLQGML-TYELGELKE----CQCFIQVSESSLENCFSK-----HGSRFA 740
L G+KP EP L ML T+ +L E + F+Q S + C + +G F
Sbjct: 668 LLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM-GCLDETRTLNYGQVFV 726
Query: 741 E-----TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTN 795
+ +++ ++ G V++AKNPCL PGDVR+L AV+ P+LHH+ DC+VFPQKG RPH N
Sbjct: 727 QFSGSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPN 786
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNH 842
E SGSDLDGD+Y+V WD LIP K PM+ +PA L T ++ +
Sbjct: 787 ECSGSDLDGDVYFVCWDPELIP--YKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVN 844
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
+LG I NAH ADR A C+ LAKL + AVD PKTG +P L+ K+YPDF
Sbjct: 845 DSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDF 904
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTAD 962
ME + +Y+S+ ++G+L+R++K S+ + + YD D+EV G D+ D
Sbjct: 905 MEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKF-LTREKMQRFYDPDMEVEGFEDYIDD 963
Query: 963 ARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKE 1019
A K YD +L L+ Y V + I M + ++K+ E + + + RKE
Sbjct: 964 AFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRD--AEAISMAVRSLRKE 1021
Query: 1020 FRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSF 1079
R F + S+ D E + Y KASAWY VTYH + + +G R LSF
Sbjct: 1022 ARSWFNEKGSEL---DEEIDDAY-AKASAWYYVTYHPSYWGQ----YNEGMNRD-HFLSF 1072
Query: 1080 AWIANDYLARIK 1091
W D L +IK
Sbjct: 1073 PWCVYDKLIQIK 1084
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 322/912 (35%), Positives = 484/912 (53%), Gaps = 96/912 (10%)
Query: 246 DDPWIRTTDFSPSGAIGQCNS-----KQRVQEDCLSQPVTIREEPDFEVPVED------- 293
DD W+RTTDF+ S IGQ + +Q + +E + + +E
Sbjct: 203 DDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCN 262
Query: 294 ----PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR-CQPREVIVT-ALK 347
P C + FEI+F VN ++ G + L D+F+ L+ C+ +V + AL+
Sbjct: 263 LSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALE 322
Query: 348 HIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLES 405
+Y + ++ L + + ++ K P ++D+ + VRR+ ITP++ Y+
Sbjct: 323 KLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPE 382
Query: 406 KDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFK 454
+V++R FLR++F+DE L+ +++ + ++TG++K
Sbjct: 383 INVSNRVLRQFHNDIDNFLRISFVDEELEKIHST-------------NVQARGRRTGIYK 429
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIA 513
R+ S L +G + +R+ FLAFSS+QLR++SAW F+ + DI++WMG F+ +N+A
Sbjct: 430 RILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVA 489
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIK--RNG--YVFSDGIGKITPDLAMEVAQI 569
KYAAR+G FSS+ T+ + E++ +PDI+ ++G YVF DGIGKI+ + A +VA
Sbjct: 490 KYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAK 548
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ 629
+L G P SA+QIR G+KGVVA P ++SLR SM+K++S +T L++ +W+++Q
Sbjct: 549 CRLKGCTP-SAFQIRIGGFKGVVAIDPT--SSWKLSLRKSMEKYESENTKLDVLAWSKYQ 605
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAA 688
P FLNRQ+ITLLSTL V D F Q + +LN +L A E L S E N
Sbjct: 606 PCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILK 665
Query: 689 IMLSAGFKPQTEPHLQGML-TYELGELKE----CQCFIQVSESSLENCFSK-----HGSR 738
ML G+KP EP L ML T+ +L E + F+Q S + C + +G
Sbjct: 666 EMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM-GCLDETRTLNYGQV 724
Query: 739 FAE-----TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPH 793
F + +++ ++ G V++AKNPCL PGDVR+L AV+ P+LHH+ DC+VFPQKG RPH
Sbjct: 725 FVQFSGSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPH 784
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHV 840
NE SGSDLDGD+Y+V WD LIP K PM+ +PA L T ++
Sbjct: 785 PNECSGSDLDGDVYFVCWDPELIP--YKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYI 842
Query: 841 NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYP 900
+ +LG I NAH ADR A C+ LAKL + AVD PKTG +P L+ K++P
Sbjct: 843 VNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFP 902
Query: 901 DFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFT 960
DFME + +Y+S ++G+L+R++K S+ + + YD D+EV G VD+
Sbjct: 903 DFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKL-LTREKMKRFYDPDMEVEGFVDYI 961
Query: 961 ADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKE 1019
DA K YD +L L+ Y V + E M S + E + + + RKE
Sbjct: 962 DDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAESISMAVRSLRKE 1021
Query: 1020 FRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSF 1079
R F + S+ D E + Y KASAWY VTYH + + +G R LSF
Sbjct: 1022 ARSWFNEKGSEL---DEEIDDAY-AKASAWYYVTYHHSYWGQ----YNEGMNRD-HFLSF 1072
Query: 1080 AWIANDYLARIK 1091
W D L +IK
Sbjct: 1073 PWCVYDKLIQIK 1084
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName:
Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 335/992 (33%), Positives = 501/992 (50%), Gaps = 156/992 (15%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLD-----DDDPWIRTTDFSPSGAIGQCNSKQR 269
+++ + +P+I K+D + + F ++D D+ WIRTTDF+ S IGQ +
Sbjct: 169 LVIQVIGAPKIF---EKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAF-- 223
Query: 270 VQEDCLSQPVTIREEPDFE-----------------------------VPVEDPFFCMHY 300
CL PV + PDF VPV DP
Sbjct: 224 ----CLELPVHL-NVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDP------ 272
Query: 301 KEGVS--FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQP--REVIVTALKHIYSYKRPV 356
G S FEI+F +N ++ L+ L F+ LL + R +I L+ ++
Sbjct: 273 PPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECC 332
Query: 357 FDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR--- 411
++ L+D + I KL P ++DD + + R+ +TP + Y+ +V++R
Sbjct: 333 YEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLR 392
Query: 412 --------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
FLRV+F+DE L+ + + LS +S ++T ++ R+ S+L DG
Sbjct: 393 HYSKYINNFLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDG 442
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLC 522
+ +++ FLAFSS+QLR++SAW F+ + + I+ WMG+F +N+AKYAAR+G
Sbjct: 443 IVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQS 502
Query: 523 FSSTHATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
FSS+ T+ + E++ +PD++ YVFSDGIGKI+ + A +VA+ L P
Sbjct: 503 FSSSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLT-EFSP 560
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
SA+QIRY GYKGVVA P + ++SLR SM KF+S +T L++ +W+++QP ++NRQ+I
Sbjct: 561 SAFQIRYGGYKGVVAVDP--NSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLI 618
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKP 697
TLLSTL V+D +F Q + +L+ +L A E L + E N ++ G+KP
Sbjct: 619 TLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKP 678
Query: 698 QTEPHLQGML----TYELGELKECQCFIQVSESSLENCFS------------------KH 735
EP L ML +L EL+ S+ C +
Sbjct: 679 DAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP 738
Query: 736 GSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTN 795
G RF +I G VV+AKNPCL PGDVR+L+AV+ P L+H+ DC+VFPQKG RPH N
Sbjct: 739 GRRF-------IITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPN 791
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNH 842
E SGSDLDGD+Y+V WD+ L+PP ++ PM+ TP + L ++ +
Sbjct: 792 ECSGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVN 849
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
+LG I NAH AD+ AF + CI LAK +TAVD PKTG +P HL K+YPDF
Sbjct: 850 DSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDF 909
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTAD 962
ME + TY+S ++G+L+R++K IS+ S ++ YD D+EV G ++ +
Sbjct: 910 MEKPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVASKSYDKDMEVDGFEEYVDE 968
Query: 963 ARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKE 1019
A QK +YD +L L+ Y + + I M K ++++ E + + A RKE
Sbjct: 969 AFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKE 1026
Query: 1020 FRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSF 1079
+F KASAWY VTYH + L +G R LSF
Sbjct: 1027 TLSLFNASEE---------EENESAKASAWYHVTYHSSY----WGLYNEGLNRD-HFLSF 1072
Query: 1080 AWIANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
AW D L RIK N+G+ + L R
Sbjct: 1073 AWCVYDKLVRIK-----KTNLGRRQRQETLER 1099
>gi|302786286|ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
gi|300157073|gb|EFJ23699.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
Length = 834
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 312/838 (37%), Positives = 454/838 (54%), Gaps = 91/838 (10%)
Query: 306 FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKD 365
E+ F VN ++ G ++ L+ FF LL ++AL ++ ++ + ++++
Sbjct: 29 LEVEFKVNYLIQNGHVSPAGLTREFFGLLSENTPAWCLSALSNLERCEKTCLNPASQIRN 88
Query: 366 VQECLIKNPKLNEGPKNIDDIA-EVRRLVITPTKAYWF----LESKDVA-------DRFL 413
+ + G D+ V+RL++TP K Y+ ES V D FL
Sbjct: 89 YMRTSNRRRERYLGAVAADESQIYVKRLLVTPLKVYFLGPELEESNRVTRHFSHKLDNFL 148
Query: 414 RVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSF 473
RVTF+DE ++N+ VLS S+ KT V+ R+ +IL G LCG+ + F
Sbjct: 149 RVTFVDEDFDSLNSYVLS-----------SSRGRTKTEVYYRLLAILRLGIKLCGKDFQF 197
Query: 474 LAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEI 532
LAFS++QLR++S W F+ E + I+ WMG+F + +N+AK AARMG FS++ T+++
Sbjct: 198 LAFSASQLRENSLWMFADDDEVTGEYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTLDV 257
Query: 533 PPTEVDHELPDIKR-----NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAG 587
P EV +L D++ + Y FSDGIG I+ + A VA+ + S PSA+QIRY G
Sbjct: 258 PRGEV-RQLSDVETFTMDGHKYCFSDGIGTISREFATRVAR--RCRASTVPSAFQIRYGG 314
Query: 588 YKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVS 647
YKGVVA PA ++SLR SM KF S T+L++ TR+ P +LNR+II+LLSTL V
Sbjct: 315 YKGVVAVDPA--SCFKLSLRPSMSKFPSEQTTLDVLEKTRYIPSYLNREIISLLSTLEVP 372
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI-MLSAGFKPQTEPHLQGM 706
D +F +QA L+ ML+ S ++VL A + + + M+ AGF P TEP+++ +
Sbjct: 373 DGVFERMQAHQVELLDRMLLDSAATYDVLRVLYAGECHKLLVSMVLAGFSPVTEPYMRSL 432
Query: 707 L-TYELGEL----KECQCFIQVSESSLENCFS-----KHGSRFAETKKLQV--------I 748
L + +L K+ + F+ L C ++G F + LQV +
Sbjct: 433 LQAFRAAQLLSLEKKSRIFVPKGRL-LMGCLDEQRVLRYGQCFVQVSPLQVTARNQAFVV 491
Query: 749 NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
G VV+AKNPCL PGDV +LEAVD PELHH+ DC+VFPQ+G RPH NE SGSDLDGD Y+
Sbjct: 492 TGSVVVAKNPCLHPGDVLVLEAVDVPELHHMVDCIVFPQQGPRPHPNECSGSDLDGDQYF 551
Query: 809 VTWDENLIPPSKKSCPPM--ECTPA----------EAKPLTCH-VNHQNLGQICNAHVVH 855
V+WD LIPP + PPM E PA E + + + +LG I +AH+
Sbjct: 552 VSWDSALIPPKRH--PPMNYEAPPAVELDHSVRLEEIQEFFVNWITSDSLGVIAHAHLAL 609
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
+D S+ A D C+ LA+L + AVD PKTG MP L+P++YPDFME +TY S +
Sbjct: 610 SDWSDLQARDPKCMELARLYSVAVDFPKTGVPAVMPPELRPEQYPDFMEKRNKRTYISTR 669
Query: 916 ILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLN 975
++G+LYR I+ ++ + + S V D YD L V G +A+ K YD +L
Sbjct: 670 VIGKLYRSIRESH-RDTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFKECYDSKLT 728
Query: 976 GLLGQYNVNRKEFR--HIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFEL 1033
+L Y V+ E + S+ +Y+ R+QG+ R+ + A KE R F+ E+
Sbjct: 729 SILNHYKVSEAEIMSGSVRSLARYSRRRQGDAMARVVLAAKALVKEARGWFDDGG---EI 785
Query: 1034 SDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
++NE KA AWY VTYH E KKS LLSF W+ +D L IK
Sbjct: 786 TENEACA----KAFAWYHVTYHPEARKKS------------DLLSFPWVVSDKLVAIK 827
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 337/930 (36%), Positives = 491/930 (52%), Gaps = 127/930 (13%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCN------------------------------SKQRVQED 273
D D+ W RT DF+PS +IGQ + +
Sbjct: 33 DTDEQWTRTIDFTPSASIGQSSILCLEVPQQCELPRIGDYFVYYKEQNLDFECRNGYSYS 92
Query: 274 CLSQPVTIREEPDF-EVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFD 332
C S V I + PD+ EVP +EI+F +N ++ G L+ + SFF
Sbjct: 93 CGSNLVPIVKSPDYIEVP---------------YEILFKINHLVQNGTLSGPTVDHSFFR 137
Query: 333 LL--RCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNI---DDIA 387
+ + +P + I AL + K + + L + K+ ++ NI D +
Sbjct: 138 HVSPKFEPIDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKSRHASQKLSNISLDDGLV 197
Query: 388 EVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAP 436
V R+ +TP K Y++ +V++R FLR++F+DE + + + LS
Sbjct: 198 YVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDEDCEKLRSADLS----- 252
Query: 437 IVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS 496
TS + +++T ++ RV S+LS+G N+ + + FLAFSS+QLRD+SAW F+ +
Sbjct: 253 --PRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLT 310
Query: 497 VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSD 553
DI+ WMG+F +N+AKYAAR+G FSS+ T+++ +EV+ +PDI NG Y+FSD
Sbjct: 311 ASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLKVHKSEVE-RIPDIT-NGTKYIFSD 368
Query: 554 GIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF 613
G+GKI+ + A+EVA KL P S +QIRY GYKGVVA + ++SLR SM KF
Sbjct: 369 GVGKISANFAVEVAMKCKLKRFAP-SVFQIRYGGYKGVVAVDTRSNH--KLSLRKSMSKF 425
Query: 614 KSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAF 673
+S + +L++ +++++QP FLNRQ+ITLLSTL VSD +F Q +LN M+ A
Sbjct: 426 QSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTEPQAAR 485
Query: 674 E-VLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELK-ECQCFIQVSESS 727
E V E N +LS G++P EP+L +L +L ELK + + FI +
Sbjct: 486 EAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRAM 545
Query: 728 L----ENCFSKHGSRF------AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
+ E C K+G F A+ + V+ G VV+AKNPCL PGD+R+L+AVD P LH
Sbjct: 546 MGCLDETCTLKYGQVFVQASYSADDHRKVVVTGKVVVAKNPCLHPGDIRVLQAVDVPALH 605
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL- 836
HL DC+VFPQ+G RPH NE SGSDLDGD+Y+V+WD +LIP + PM+ TPA A+ L
Sbjct: 606 HLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIP--SRLVDPMDYTPASAETLD 663
Query: 837 ------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
T ++ +++LG I NAHVV AD+ A C+ LAKL + AVD PKT
Sbjct: 664 HDVTIEEIQEYFTNYIVNESLGIIANAHVVFADQERMKAESPPCVQLAKLFSIAVDFPKT 723
Query: 885 GKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
G +P L K+YPDFME + TY+S ++G+LYR+IK + EV
Sbjct: 724 GVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREV----AR 779
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRK 1001
YDTDL V G D+ +A K YD +L L+ Y + + I M K N K
Sbjct: 780 RSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAK-NFTK 838
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
+ + ++ + + RKE R F +M++ + D E KASAWY VTYH+++
Sbjct: 839 SSD-ADAIRMAVRSLRKEARSWFNEMSTGEDGQD-----AMEAKASAWYHVTYHQQYWGS 892
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
+G R L+SF W D L IK
Sbjct: 893 ----YNEGYDRP-HLISFPWCVYDKLVAIK 917
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 331/920 (35%), Positives = 487/920 (52%), Gaps = 107/920 (11%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQP------------VTIREEP-DFEVP 290
D D+ W RT DF+PS +IGQ + CL P V +E DFE
Sbjct: 208 DTDEQWTRTIDFTPSVSIGQSSIF------CLEVPQQCELPRIGDYFVYYKERNLDFECR 261
Query: 291 VEDPFFCMH----------YKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLL--RCQP 338
+ C + Y E V +EI+F +N ++ G L+ + SFF + +P
Sbjct: 262 NGYSYSCGNCLVPIVKSPDYIE-VPYEILFKINHLVQNGTLSGPTVDHSFFCHVSPEFEP 320
Query: 339 REVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNI---DDIAEVRRLVIT 395
+ I AL + K + L + ++ ++ NI D + V R+ +T
Sbjct: 321 IDHIKRALLKMSYLKSTCLNPTNWLSVQYSRIRRSRHASQRSSNISLDDGLVYVHRVQVT 380
Query: 396 PTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSN 444
P K Y++ +V++R FLR++F+DE + + + LS TS
Sbjct: 381 PAKVYFYGPEINVSNRVVRNFSADIDNFLRISFVDEDCEKLRSLDLS-------PRSTSG 433
Query: 445 SFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWM 504
+ +++T ++ RV S+LS+G N+ + + FLAFSS+QLRD+SAW F+ + DI+ WM
Sbjct: 434 NDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWM 493
Query: 505 GEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPD 561
G+F +N+AKYAAR+G FSS+ T+ + EV+ ++PDIK NG Y+FSDG+GKI+ +
Sbjct: 494 GDFRDIRNVAKYAARLGQSFSSSTETLIVRKHEVE-QIPDIK-NGTNYIFSDGVGKISAN 551
Query: 562 LAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLE 621
A EVA KL P S +QIRY GYKGVVA P + ++SLR SM KF+S + +L+
Sbjct: 552 FAKEVAMKCKLRRFAP-SVFQIRYGGYKGVVAVDPRSNR--KLSLRRSMLKFQSENITLD 608
Query: 622 ICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE-VLTASC 680
+ +++++QP FLNRQ+ITLLSTL V D +F Q +LN M+ A E V
Sbjct: 609 VLAYSKYQPCFLNRQLITLLSTLGVGDNVFELKQKEAIKQLNRMVTEPQAAREAVELMPM 668
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLENCFS--- 733
E N +LS G++P EP+L +L +L ELK ++ C
Sbjct: 669 GEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETR 728
Query: 734 --KHGSRF------AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
K+G F A+ V+ G VV+AKNPCL PGD+R+L+AVD P LHH+ DC+VF
Sbjct: 729 TLKYGQVFIQASYCADDHHKIVVTGKVVVAKNPCLHPGDIRVLQAVDVPSLHHMFDCVVF 788
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL--------- 836
PQ+G RPH NE SGSDLDGD+Y+V+WD +LIP + PM+ TPA A+ L
Sbjct: 789 PQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPSHMED--PMDYTPAPAETLDHDVTIEEI 846
Query: 837 ----TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
T ++ +++LG I NAHVV+AD+ + A C+ LAKL + AVD PKTG +P
Sbjct: 847 QEYFTNYIVNESLGIIANAHVVYADKEDLKAKSRPCLELAKLFSIAVDFPKTGVPALIPP 906
Query: 893 HLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLE 952
L K+YPDFME + TY+S ++G+LYR+IK + EV YDTDL
Sbjct: 907 ELHVKEYPDFMEKLDKATYESKGVIGKLYREIKKHTPHIRHFTREV----AKRSYDTDLI 962
Query: 953 VPGSVDFTADARNQKCSYDGQLNGLLGQYNV-NRKEFRHIWSMPKYNSRKQGELQERLKH 1011
V G D+ +A K YD +L L+ Y + + E + + + + ++
Sbjct: 963 VDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCFLKMAKNFTKSSDADAIRM 1022
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSA 1071
+ + RKE R F +M++ S+++++ E KASAWY VTY ++ +G
Sbjct: 1023 AVRSLRKEARSWFNEMST----SEDDQDAT-EAKASAWYHVTYDPQYWGN----YNEGYD 1073
Query: 1072 RSVVLLSFAWIANDYLARIK 1091
R L+SF W D L IK
Sbjct: 1074 RP-HLISFPWCVYDKLVIIK 1092
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 471 bits (1212), Expect = e-129, Method: Compositional matrix adjust.
Identities = 334/992 (33%), Positives = 500/992 (50%), Gaps = 156/992 (15%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLD-----DDDPWIRTTDFSPSGAIGQCNSKQR 269
+++ + +P+I K+D + + F ++D D+ WIRTTDF+ S IGQ +
Sbjct: 169 LVIQVIGAPKIF---EKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAF-- 223
Query: 270 VQEDCLSQPVTIREEPDFE-----------------------------VPVEDPFFCMHY 300
CL PV + PDF VPV DP
Sbjct: 224 ----CLELPVHL-NVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDP------ 272
Query: 301 KEGVS--FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQP--REVIVTALKHIYSYKRPV 356
G S FEI+F +N ++ L+ L F+ LL + R +I L+ ++
Sbjct: 273 PPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECC 332
Query: 357 FDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR--- 411
++ L+D + I KL P ++DD + + R+ +TP + Y+ +V++R
Sbjct: 333 YEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLR 392
Query: 412 --------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
FLRV+F+DE L+ + + LS +S ++T ++ R+ S+L DG
Sbjct: 393 HYSKYINNFLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDG 442
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLC 522
+ +++ FLAFSS+QLR++SAW F+ + + I+ WMG+F +N+AKYAAR+G
Sbjct: 443 IVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQS 502
Query: 523 FSSTHATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
FSS+ T+ + E++ +PD++ YVFSDGIGKI+ + A +VA+ L P
Sbjct: 503 FSSSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLT-EFSP 560
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
SA+QIRY GYKGVVA P + ++SLR SM KF+S +T L++ +W+++QP ++NRQ+I
Sbjct: 561 SAFQIRYGGYKGVVAVDP--NSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLI 618
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKP 697
TLLSTL V+D +F Q + +L+ +L A E L + E N ++ G+KP
Sbjct: 619 TLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKP 678
Query: 698 QTEPHLQGML----TYELGELKECQCFIQVSESSLENCFS------------------KH 735
EP L ML +L EL+ S+ C +
Sbjct: 679 DAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP 738
Query: 736 GSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTN 795
G RF +I G VV+AKNPCL GDVR+L+AV+ P L+H+ DC+VFPQKG RPH N
Sbjct: 739 GRRF-------IITGPVVVAKNPCLHSGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPN 791
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNH 842
E SGSDLDGD+Y+V WD+ L+PP ++ PM+ TP + L ++ +
Sbjct: 792 ECSGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVN 849
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
+LG I NAH AD+ AF + CI LAK +TAVD PKTG +P HL K+YPDF
Sbjct: 850 DSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDF 909
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTAD 962
ME + TY+S ++G+L+R++K IS+ S ++ YD D+EV G ++ +
Sbjct: 910 MEKPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVASKSYDKDMEVDGFEEYVDE 968
Query: 963 ARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKE 1019
A QK +YD +L L+ Y + + I M K ++++ E + + A RKE
Sbjct: 969 AFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKE 1026
Query: 1020 FRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSF 1079
+F KASAWY VTYH + L +G R LSF
Sbjct: 1027 TLSLFNASEE---------EENESAKASAWYHVTYHSSY----WGLYNEGLNRD-HFLSF 1072
Query: 1080 AWIANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
AW D L RIK N+G+ + L R
Sbjct: 1073 AWCVYDKLVRIK-----KTNLGRRQRQETLER 1099
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 335/944 (35%), Positives = 476/944 (50%), Gaps = 142/944 (15%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFEVPVEDPFFCMHYKEG 303
D DD W+R DFSPS IGQ ++ CL P + + P+F+ + F C EG
Sbjct: 213 DTDDQWVRDVDFSPSYCIGQSSAL------CLELPRS-GQLPNFQ----ENFPCYKEDEG 261
Query: 304 ---------------------------VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRC 336
+ ++I+F VN+++ G L L SF+ L+
Sbjct: 262 RFFLEVGSTFCRVSDLVPILREAQGIELPYDIVFKVNSLVQHGYLPGPALDASFYRLI-- 319
Query: 337 QPREV----IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVR 390
P V I AL+ ++ +D L++ I +L P +DD + VR
Sbjct: 320 NPSRVNIAHIQNALEKLHHSMECCYDPVRWLREEYRKCISTGRLPTPPAVAVDDGLVHVR 379
Query: 391 RLVITPTKAYW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVK 439
R+ ITPTK Y+ + D D FLRV+F+DE L + +
Sbjct: 380 RVQITPTKVYFRGPEVNLSNRVLRKYPDDIDNFLRVSFVDEDLDKLFST----------- 428
Query: 440 DITSNSFS----QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET 495
+I+ +FS ++T +++R+ S +G + +++ FL FSS+QLR+ S W F+
Sbjct: 429 NISPRTFSAIEGRQTKIYQRILSTQRNGIVIGSKKFEFLGFSSSQLRESSLWMFASRTGL 488
Query: 496 SVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIK-RNG---YV 550
DI+ WMG+F KN+AKYAAR+G F S+ + I E++ ++PDI+ R+G YV
Sbjct: 489 RAADIRRWMGDFREIKNVAKYAARLGQSFGSSRESFNIDEKEIE-KIPDIEVRSGGVDYV 547
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSM 610
FSDGIGKI+ LA +AQ S PSA+QIRY GYKGVVA P ++SLR SM
Sbjct: 548 FSDGIGKISAALAHSIAQKFGF-LSFTPSAFQIRYGGYKGVVAVDPTSLK--KLSLRRSM 604
Query: 611 KKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD 670
K+KS +TSL+I W+++Q +LNR++ITLLSTL V D IF Q ++LN +L
Sbjct: 605 SKYKSTNTSLDILGWSKYQACYLNREVITLLSTLGVRDHIFQRKQKEAIAQLNAILTDPS 664
Query: 671 VAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------------------- 709
A E L + E N ML+ G+KP EP L ML
Sbjct: 665 SAQEALELMAPGESTNVLKEMLACGYKPGAEPFLAMMLQTFCASKLLDLRTRARIFIPKG 724
Query: 710 --------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLR 761
E L Q F+Q S S+ F H + Q++ G +++AKNPCL
Sbjct: 725 RAMMGCLDETRTLGYGQAFVQYS-SARHGQFRDHSRGGEAVRNTQILKGKLIVAKNPCLH 783
Query: 762 PGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK 821
PGDVR+LEAV+ P LHH+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD +LIPP +
Sbjct: 784 PGDVRVLEAVNVPALHHMVDCIVFPQKGKRPHANECSGSDLDGDVYFVCWDPDLIPP--R 841
Query: 822 SCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENC 868
+ PPM+ T A L T ++ + +LG ICNAH V ADR A + C
Sbjct: 842 TFPPMDYTAAPTTILDHDVTIEEVQEYFTDYLLNDSLGIICNAHTVFADRDPLMARSKEC 901
Query: 869 ILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME-IEEYQTYKSNKILGRLYRQIKGA 927
I LA+L++ AVD PKTG +P L+ K+YPDFME + +TY+S ++LG+L+R ++
Sbjct: 902 IELARLSSIAVDFPKTGVPAKIPRELRVKEYPDFMEKAADKRTYESQRVLGKLFRDVRDI 961
Query: 928 YDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK- 986
+ V S YD D+EV G +A + K YD +L ++ Y + +
Sbjct: 962 APDTSPVRSFTK-EMARRSYDPDMEVDGFQKHIDEAFHYKSVYDNKLGNMMDYYGIKTEA 1020
Query: 987 EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKA 1046
E M S + + + +S + RK+ R F++ SDN + LY KA
Sbjct: 1021 EIISGSIMKVGKSFDKKRDFDSINYSIRSLRKQARAWFDE-------SDNSPDDLY-AKA 1072
Query: 1047 SAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARI 1090
SAWY VTYH + + +G R V LSF W D L I
Sbjct: 1073 SAWYYVTYHPSYWGR----YNEGMNR-VHFLSFPWCFYDKLIDI 1111
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 468 bits (1203), Expect = e-128, Method: Compositional matrix adjust.
Identities = 338/917 (36%), Positives = 494/917 (53%), Gaps = 101/917 (11%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCN-SKQRVQEDCLSQP------VTIREEP-DFEVPVEDPF 295
+ D+ W RT DF+PS +IGQ + R Q+ C P V +E+ DFE +
Sbjct: 208 EKDEQWTRTIDFTPSASIGQSSIYVWRCQQQC-ELPRIGDYFVYYKEQNLDFECRNGYSY 266
Query: 296 FCMH----------YKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLL--RCQPREVIV 343
C Y E V +EI+F +N ++ G L+ + SFF + + +P + I
Sbjct: 267 SCGSSLVPIVKSPDYIE-VPYEILFKINHLVQNGTLSGSTVDHSFFRHVSPKFEPIDHIK 325
Query: 344 TALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNI---DDIAEVRRLVITPTKAY 400
AL + K + + L + K+ ++ NI D + V R+ +TP K Y
Sbjct: 326 RALLKMTYLKSTCLNPTDWLSVQYSRIRKSRHASQKLSNISLDDGLVYVHRVQVTPAKVY 385
Query: 401 WFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQK 449
++ +V++R FLR++F+DE + + + LS TS + +++
Sbjct: 386 FYGPEINVSNRVVRHFSADIDNFLRISFVDEDCEKLRSADLS-------PRSTSGNDARR 438
Query: 450 TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT- 508
T ++ RV S+LS+G N+ + + FLAFSS+QLRD+SAW F+ + DI+ WMG+F
Sbjct: 439 TALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRD 498
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEV 566
+N+AKYAA +G FSS+ T+++ +EV+ +PDI NG Y+FSDG+GKI+ + A+EV
Sbjct: 499 IRNVAKYAAILGQSFSSSTETLKVHKSEVE-RIPDIT-NGTKYIFSDGVGKISANFAVEV 556
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A KL P S +QIRY GYKGVVA + ++SLR SM KF+S + +L++ +++
Sbjct: 557 AMKCKLKRFAP-SVFQIRYGGYKGVVAVDTRSNH--KLSLRKSMSKFQSENITLDVLAYS 613
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE-VLTASCAEQGN 685
++QP FLNRQ+ITLLSTL VSD +F Q +LN M+ A E V E N
Sbjct: 614 KYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTEPQAAREAVELMPMGEVTN 673
Query: 686 TAAIMLSAGFKPQTEPHLQGML----TYELGELK-ECQCFIQVSESSL----ENCFSKHG 736
+LS G++P EP+L +L +L ELK + + FI + + E C K+G
Sbjct: 674 VVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETCTLKYG 733
Query: 737 SRF------AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD 790
F A+ + V+ G VV+AKNPCL PGD+R+L+AVD P LHHL DC+VFPQ+G
Sbjct: 734 QVFVQASYSADDHRKVVVTGKVVVAKNPCLHPGDIRVLQAVDVPALHHLFDCVVFPQQGP 793
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------T 837
RPH NE SGSDLDGD+Y+V+WD +LIP + PM+ TPA A+ L T
Sbjct: 794 RPHPNECSGSDLDGDIYFVSWDPHLIP--SRLVDPMDYTPASAETLDHDVTIEEIQEYFT 851
Query: 838 CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
++ +++LG I NAHVV D+ A C+ LAKL + AVD PKTG +P L K
Sbjct: 852 NYIVNESLGIIANAHVVFTDQERMKAESPPCVQLAKLFSIAVDFPKTGVPALIPHELHVK 911
Query: 898 KYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSV 957
+YPDFME + TY+S ++G+LYR+IK + EV YDTDL V G
Sbjct: 912 EYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREV----ARRSYDTDLIVDGYE 967
Query: 958 DFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYS 1014
D+ +A K YD +L L+ Y + + I M K N K + + ++ +
Sbjct: 968 DYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAK-NFTKSSD-ADAIRMAVR 1025
Query: 1015 AFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSV 1074
+ RKE R F +M++ + D E KASAWY VTYH+++ +G R
Sbjct: 1026 SLRKEARSWFNEMSTGEDGQD-----AMEAKASAWYHVTYHQQYWGS----YNEGYDRP- 1075
Query: 1075 VLLSFAWIANDYLARIK 1091
L+SF W D L IK
Sbjct: 1076 HLISFPWCVYDKLVAIK 1092
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 334/978 (34%), Positives = 509/978 (52%), Gaps = 124/978 (12%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS-----KQR 269
+L+ L +PRI R F DD W+RTTDF PS IG +S ++
Sbjct: 166 LLIQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRG 220
Query: 270 VQEDCLSQPVTIREEPDFEVPVEDPF-FCMHYK----------EGVS--FEIMFLVNAVM 316
V+ + E + + ++ F F + K EG+S ++I+F +++++
Sbjct: 221 VRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLV 280
Query: 317 HKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNP 374
G + L+ FF L+ + R V I AL+ +Y K +D L + + +K
Sbjct: 281 QHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGR 340
Query: 375 KLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEG 421
+ + P +DD + VRR+++TP K Y+ +V++R FLRV+F+DE
Sbjct: 341 QPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEE 400
Query: 422 LQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQL 481
+ + Y ++ ++ S +T +++R+ S L GF + +++ FLAFSS+QL
Sbjct: 401 WEKL-------YSTDLLPKASTGS-GVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQL 452
Query: 482 RDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHE 540
RD+S W F+ + DI+ WMG+F+ KN+AKYAAR+G F S+ T+ + E++
Sbjct: 453 RDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIE-V 511
Query: 541 LPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAK 598
+PD+K +G YVFSDGIGKI+ D A VA L +P SA+QIRY GYKGVV P
Sbjct: 512 IPDVKVHGTSYVFSDGIGKISGDFAHRVASKCGLQYTP--SAFQIRYGGYKGVVGVDP-- 567
Query: 599 DDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASM 658
D +++SLR SM K++S + L++ W+++QP +LNRQ+ITLLSTL V DE+ Q
Sbjct: 568 DSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEA 627
Query: 659 ASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGELKE 716
+L+ +L S A E L S E N ML+ G+KP EP L ML T+ +L +
Sbjct: 628 VDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLD 687
Query: 717 C---------------------------QCFIQVSESSLENCFSKHGSRFAETKKLQ--- 746
Q F+Q + + FS F ++
Sbjct: 688 LRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAG-HGEFSDDLHPFNNSRSTNSNF 746
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
++ G VV+AKNPCL PGD+R+L+AV+ LHH+ DC+VFPQKG RPH NE SGSDLDGD+
Sbjct: 747 ILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 806
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHV 853
Y+V WD+++IPP + PME PA + L T ++ + +LG I NAHV
Sbjct: 807 YFVCWDQDMIPP--RQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHV 864
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKS 913
V ADR A + C LA+L + AVD PKTG +PS L+PK+YPDFM+ + +Y S
Sbjct: 865 VFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYIS 924
Query: 914 NKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQ 973
+++G+L+R++K + S+++ + YD D+EV G D+ +A + K YD +
Sbjct: 925 ERVIGKLFRKVKDKAPQASSIAT-FTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNK 983
Query: 974 LNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFE 1032
L L+ Y + + E M + + + E + + A RKE R F++ N +
Sbjct: 984 LGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRN---D 1040
Query: 1033 LSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKI 1092
+ D KASAWY VTYH + QG R+ +SF W D L +IK
Sbjct: 1041 IDD------MLPKASAWYHVTYHPTY----WGCYNQGLKRA-HFISFPWCVYDQLIQIK- 1088
Query: 1093 KCQEMANIGKSKPVNNLA 1110
+ +++PV NL+
Sbjct: 1089 -----KDKARNRPVLNLS 1101
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 334/951 (35%), Positives = 498/951 (52%), Gaps = 127/951 (13%)
Query: 246 DDPWIRTTDFSPSGAIGQCNS-----KQRVQEDCLSQPVTIREEPDFEVPVEDPF-FCMH 299
DD W+RTTDF+PS IG +S ++ V + E + + ++ F F +
Sbjct: 41 DDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQEKFFHYAERENNITLQTGFTFFIS 99
Query: 300 YK----------EGVS--FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTA 345
K EG++ ++I+F +++++ G + L+ FF L+ Q R V I A
Sbjct: 100 QKSSLVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQA 159
Query: 346 LKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFL 403
L+ +Y K +D L + + +K + + P +DD + VRR+++TP K Y+
Sbjct: 160 LEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCG 219
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+V++R FLRV+F+DE + + + L + K T N +T +
Sbjct: 220 PEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNI 271
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KN 511
++R+ S L GF + ++ FLAFSS+QLRD+S W F+ + DI+ WMG+F+ KN
Sbjct: 272 YERILSTLRKGFVIGDKKIEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKN 331
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQI 569
+AKYAAR+G F S+ T+ + E++ +PD+K +G YVFSDGIGKI+ D A VA
Sbjct: 332 VAKYAARLGQSFGSSKETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASK 390
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ 629
L +P SA+QIRY GYKGVVA P +++SLR SM K++S + L++ W+++Q
Sbjct: 391 CGLQYTP--SAFQIRYGGYKGVVAVDPYS--SMKLSLRKSMSKYESDNNKLDVLEWSKYQ 446
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAA 688
P +LNRQ+ITLLSTL V D++ Q +L+ +L S A E L S E N
Sbjct: 447 PCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 506
Query: 689 IMLSAGFKPQTEPHLQGML-TYELGELKEC---------------------------QCF 720
ML+ G+ P EP L ML T+ +L + Q F
Sbjct: 507 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVF 566
Query: 721 IQVSESSLENCFSKHGSRFAETKKLQ---VINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
+Q + + FS+ F ++ ++ G VV+AKNPCL PGD+R+L AVD P LH
Sbjct: 567 VQFTGAGHRE-FSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 625
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL- 836
H+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD+++IPP + PME PA + L
Sbjct: 626 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP--RQVQPMEYPPAPSIQLD 683
Query: 837 ------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
T ++ + +LG I NAHVV ADR A + C LA+L + AVD PKT
Sbjct: 684 HDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKT 743
Query: 885 GKIVTMPSHLKPKKYPDFMEI-EEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
G +PS L+PK+YPDFM+ + TY S +++G+L+R++K + +S I
Sbjct: 744 GVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVK----DKAPQASSTAIFTR 799
Query: 944 DI---HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNS 999
D+ YD DLEV G D+ +A + K YD +L L+ Y + + E M +
Sbjct: 800 DVARRSYDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGIMKTSKT 859
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWV 1059
+ + E + + A RKE R F++ N ++ KASAWY VTYH +
Sbjct: 860 FDRRKDAEAISIAVRALRKEARTWFKRHNDIDDML---------PKASAWYHVTYHPTY- 909
Query: 1060 KKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLA 1110
QG R +SF W D L +IK +E A +++PV NL+
Sbjct: 910 ---WGCYNQGLKRD-HFISFPWCVYDQLIQIK---KEKA---RNRPVLNLS 950
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 360/1066 (33%), Positives = 522/1066 (48%), Gaps = 169/1066 (15%)
Query: 130 LPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCF---TKDTAFALKSSAEH 186
+ ++ + G V++++F V W F V+ KF F + L+ S E+
Sbjct: 101 MDNITLHFGCQVSKEKFSVLWTQKDVSVKFGVE----LRKFHFFLTHLSKNYKLELSYEN 156
Query: 187 AVIKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLDDD 246
F++ L R K+Y +L+ + P+I K D L F DD
Sbjct: 157 I-----FQIELHRPRGKTKKY-------LLVQMLGGPKIF----KKDTSKLSNFKEATDD 200
Query: 247 DPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFEVP-VEDPFFCMHYKEG-- 303
WIR DFSPS IGQ ++ CL P P+ ++P ++ F C EG
Sbjct: 201 Q-WIRDVDFSPSYCIGQSSAL------CLELP------PNSQLPNFQENFVCYKEDEGHF 247
Query: 304 -------------------------VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQP 338
+ ++I+F VN+++ G L L FF L+
Sbjct: 248 ILEKGSTFCCKSDLVPILSAAQVSELPYDIVFKVNSLVQHGCLPGPALDARFFRLINPSK 307
Query: 339 REV----IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRL 392
+ I AL+ + K +D L++ + + +L P +DD + +RR+
Sbjct: 308 IRIAHAYIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDGLVFLRRV 367
Query: 393 VITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDI 441
ITPTK Y+ ++++R FLRV+F+DE L + + A I
Sbjct: 368 QITPTKLYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVDEDLDKL-------FSANISPRT 420
Query: 442 TSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIK 501
S ++T +++R+ S+ +G + +++ FL FS +Q+R+ S W F+ + DI+
Sbjct: 421 FSAIEGRQTNIYQRILSVQRNGITIGSKKFEFLGFSQSQVRESSLWMFASRPGLTAADIR 480
Query: 502 NWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI--KRNG--YVFSDGIG 556
WMG+F KN+AKYAAR+G FSS+ + I E++ +PDI K G YVFSDGIG
Sbjct: 481 EWMGDFREIKNVAKYAARLGQSFSSSRESFNIDRHEIEI-IPDIEVKSGGVNYVFSDGIG 539
Query: 557 KITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC 616
KI+ +LA +A+ L+L S PSA+QIRY GYKGVVA P +++SLR SM K+KS
Sbjct: 540 KISAELADSIARKLRLR-SFTPSAFQIRYGGYKGVVAVDPT--SSMKLSLRRSMSKYKST 596
Query: 617 HTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML---VASDVAF 673
+TSL+I W++++ FLNR++I LLSTL V D++F Q ++L+ +L + + A
Sbjct: 597 NTSLDILDWSKYRACFLNREVIILLSTLGVKDQVFERKQKEAIAQLDAILTDPIKAQEAL 656
Query: 674 EVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY------------------------ 709
E++ E ML+ G+KP EP L ML
Sbjct: 657 ELMAG--GENARVLNGMLACGYKPGAEPFLAMMLETFRALKLLDLRTKSRIFVPNGRAMT 714
Query: 710 ----ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQ---VINGFVVIAKNPCLRP 762
E L+ Q F+Q S + L SK F K Q ++ G +V+AKNPCL P
Sbjct: 715 GCLDETRTLEYGQAFVQYSRARL----SKSHDHFKGGKTDQHTLIVRGKIVVAKNPCLHP 770
Query: 763 GDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
GDV+IL+AVD P LHH+ DC+VFPQKG RPHTNE SGSDLDGD+Y+V WD +LIPP K
Sbjct: 771 GDVQILKAVDVPALHHMVDCIVFPQKGKRPHTNECSGSDLDGDVYFVCWDTDLIPPQK-- 828
Query: 823 CPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHVVHADRSEYGAFDENCI 869
PPM+ T + L V + +LG IC AHVV AD A E CI
Sbjct: 829 FPPMDYTAPQTTILDHDVTIEEVQEYFADYLLNDSLGIICTAHVVFADSEPDMARSEKCI 888
Query: 870 LLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ--TYKSNKILGRLYRQIKGA 927
LA+L++ AVD PKTG +P L+ K+YPDFME Y+ TY S ++LG+L+R ++
Sbjct: 889 ELAQLSSIAVDFPKTGVPAKIPKELRVKEYPDFMEKAAYKHTTYVSQRVLGKLFRAVRDI 948
Query: 928 YDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK- 986
+ V YD D+EV G D+ +A K YD +L ++ Y + +
Sbjct: 949 APDTSPVRPFTK-EAAKRSYDPDMEVDGFKDYINEAFYYKSEYDNKLGNMMDYYGIKTEA 1007
Query: 987 EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKA 1046
E M S + + E + S S+ RK+ R F + S D +Y +KA
Sbjct: 1008 EIIGGCIMRMGRSFDKKKDLEGINFSVSSLRKQARAWFNESGSKESPDD-----VY-RKA 1061
Query: 1047 SAWYQVTYH-REWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
SAWY VTYH R W L +G R V LSF W +D L IK
Sbjct: 1062 SAWYHVTYHPRFW-----GLYNEGMDR-VHFLSFPWCVHDKLFEIK 1101
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 340/982 (34%), Positives = 511/982 (52%), Gaps = 131/982 (13%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS-----KQR 269
+L+ L +PRI R F DD W+RTTDF+PS IG +S ++
Sbjct: 166 LLIQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRG 220
Query: 270 VQEDCLSQPVTIREEPDFEVPVEDPF-FCMHYK----------EGVS--FEIMFLVNAVM 316
V + E + + ++ F F + K EG++ ++I+F +++++
Sbjct: 221 VHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLV 280
Query: 317 HKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNP 374
G + L+ FF L+ Q R V I AL+ +Y K +D L + + +K
Sbjct: 281 QHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGR 340
Query: 375 KLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEG 421
+ + P +DD + VRR+++TP K Y+ +V++R FLRV+F+DE
Sbjct: 341 QPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEE 400
Query: 422 LQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQL 481
+ + + L + K T N +T +++R+ S L GF + +++ FLAFSS+QL
Sbjct: 401 WEKLYSTEL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQL 452
Query: 482 RDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHE 540
RD+S W F+ + DI++WMG+F+ KN+AKYAAR+G F S+ T+ + E++
Sbjct: 453 RDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIE-V 511
Query: 541 LPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAK 598
+PD+K +G YVFSDGIGKI+ D A VA L +P SA+QIRY GYKGVVA P
Sbjct: 512 IPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKGVVAVDPY- 568
Query: 599 DDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASM 658
+++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL V D++ Q
Sbjct: 569 -SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEA 627
Query: 659 ASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGELKE 716
+L+ +L S A E L S E N ML+ G+ P EP L ML T+ +L +
Sbjct: 628 VHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLD 687
Query: 717 C---------------------------QCFIQVSESSLENCFSKHGSRFAETKKLQ--- 746
Q F+Q + + FS+ F ++
Sbjct: 688 LRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHRE-FSEDLHPFNNSRSTNCNF 746
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
++ G VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG RPH NE SGSDLDGD+
Sbjct: 747 ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 806
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHV 853
Y+V WD+++IPP + ME PA + L T ++ + +LG I NAHV
Sbjct: 807 YFVCWDQDMIPP--RQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHV 864
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEI-EEYQTYK 912
V ADR A + C LA+L + AVD PKTG +PS L+PK+YPDFM+ + TY
Sbjct: 865 VFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYI 924
Query: 913 SNKILGRLYRQIKGAYDENISVSSEVDINPVDI---HYDTDLEVPGSVDFTADARNQKCS 969
S +++G+L+R++K + +S + I D+ YD DLEV G D+ +A + K
Sbjct: 925 SERVIGKLFRKVK----DKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTE 980
Query: 970 YDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMN 1028
YD +L L+ Y + + E M + + + E + + A RKE R F++ N
Sbjct: 981 YDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARTWFKRRN 1040
Query: 1029 SDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLA 1088
++ D KASAWY VTYH + QG R +SF W D L
Sbjct: 1041 ---DIDD------MLPKASAWYHVTYHPTY----WGCYNQGLKRD-HFISFPWCVYDQLI 1086
Query: 1089 RIKIKCQEMANIGKSKPVNNLA 1110
+IK +E A +++PV NL+
Sbjct: 1087 QIK---KEKA---RNRPVLNLS 1102
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 331/990 (33%), Positives = 496/990 (50%), Gaps = 153/990 (15%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLD-----DDDPWIRTTDFSPSGAIGQCNSKQR 269
+++ + +P+I K+D + + F ++D D+ WIRTTDF+ S IGQ +
Sbjct: 170 LVIQVIGAPKIF---EKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAF-- 224
Query: 270 VQEDCLSQPVTIREEPDFE-----------------------------VPVEDPFFCMHY 300
CL PV + PDF VPV DP
Sbjct: 225 ----CLELPVHL-NVPDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFD- 278
Query: 301 KEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQP--REVIVTALKHIYSYKRPVFD 358
+ FEI+F +N ++ L L + LL + R +I L+ ++ ++
Sbjct: 279 ---LPFEILFKLNTLVQNACLPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYE 335
Query: 359 AYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR----- 411
L+ + L KL P ++DD + + R+ +TP + Y+ +V++R
Sbjct: 336 PARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHY 395
Query: 412 ------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
FLRV+F+DE L+ + + LS +S ++T ++ R+ S+L DG
Sbjct: 396 SKYINNFLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDGIV 445
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
+ +++ FLAFSS+QLR++SAW F+ + + I+ WMG+F +N+AKYAAR+G FS
Sbjct: 446 IGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFS 505
Query: 525 STHATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSA 580
S+ T+ + E++ +PD++ YVFSDGIGKI+ + A VA+ L PSA
Sbjct: 506 SSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLT-EFSPSA 563
Query: 581 YQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITL 640
+QIRY GYKGVVA P + ++SLR SM KF+S +T L++ +W+++QP ++NRQ+ITL
Sbjct: 564 FQIRYGGYKGVVAVDP--NSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITL 621
Query: 641 LSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQT 699
LSTL V D +F Q + +L+ +L A E L + E N ++ G+KP
Sbjct: 622 LSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDA 681
Query: 700 EPHLQGML----TYELGELKECQCFIQVSESSLENCFS------------------KHGS 737
EP L ML +L EL+ S+ C + G
Sbjct: 682 EPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGR 741
Query: 738 RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
RF +I G VV+AKNPCL PGDVR+LEAV+ P L+H+ DC+VFPQKG RPH NE
Sbjct: 742 RF-------IITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNEC 794
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQN 844
SGSDLDGD+Y+V WD+ LIPP ++ PM+ TP A+ L ++ + +
Sbjct: 795 SGSDLDGDIYFVCWDQELIPP--RTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDS 852
Query: 845 LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME 904
LG I NAH AD+ AF + CI LA+ + AVD PKTG +P HL K+YPDFME
Sbjct: 853 LGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFME 912
Query: 905 IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADAR 964
+ TY+S ++G+L+R++K IS+ S ++ YD D+EV G ++ +A
Sbjct: 913 KPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVALKSYDKDMEVDGFEEYVDEAF 971
Query: 965 NQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFR 1021
+ K +YD +L L+ Y + + I M K ++++ E + + A RKE
Sbjct: 972 HYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKETL 1029
Query: 1022 QVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAW 1081
+F + E KASAWY VTYH + L +G R L+ FAW
Sbjct: 1030 SLFNATEEENE----------SAKASAWYHVTYHSSY----WGLYNEGLNRDHFLI-FAW 1074
Query: 1082 IANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
D L RIK N G+ + L R
Sbjct: 1075 CVYDKLVRIK-----KTNAGRRQRQETLER 1099
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 332/951 (34%), Positives = 500/951 (52%), Gaps = 127/951 (13%)
Query: 246 DDPWIRTTDFSPSGAIGQCNS-----KQRVQEDCLSQPVTIREEPDFEVPVEDPF-FCMH 299
DD W+RTTDF+PS IG +S ++ V + E + + ++ F F +
Sbjct: 41 DDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVS 99
Query: 300 YK----------EGVS--FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTA 345
K EG++ ++I+F +++++ G + L+ FF L+ Q R V I A
Sbjct: 100 QKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQA 159
Query: 346 LKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFL 403
L+ +Y K +D L + + +K + + P +DD + VRR+++TP K Y+
Sbjct: 160 LEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCG 219
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+V++R FLRV+F+DE + + + L + K T N +T +
Sbjct: 220 PEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNI 271
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KN 511
++R+ S L GF + +++ FLAFSS+QLRD+S W F+ + DI++WMG+F+ KN
Sbjct: 272 YERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKN 331
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQI 569
+AKYAAR+G F S+ T+ + E++ +PD+K +G YVFSDGIGKI+ D A VA
Sbjct: 332 VAKYAARLGQSFGSSRETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASK 390
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ 629
L +P SA+QIRY GYKGVVA P +++SLR SM K++S + L++ W+++Q
Sbjct: 391 CGLQYTP--SAFQIRYGGYKGVVAVDPYS--SMKLSLRKSMSKYESDNNKLDVLGWSKYQ 446
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAA 688
P +LNRQ++TLLSTL V D++ Q +L+ +L S A E L S E N
Sbjct: 447 PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILK 506
Query: 689 IMLSAGFKPQTEPHLQGML-TYELGELKEC---------------------------QCF 720
ML+ G+ P EP L ML T+ +L + Q F
Sbjct: 507 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 566
Query: 721 IQVSESSLENCFSKHGSRFAETKKLQ---VINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
+Q + + FS+ F ++ ++ G VV+AKNPCL PGD+R+L AVD P LH
Sbjct: 567 VQFTGAGHRE-FSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 625
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL- 836
H+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD+++IPP + ME PA + L
Sbjct: 626 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP--RQVQAMEYPPAPSIQLD 683
Query: 837 ------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
T ++ + +LG I NAHVV ADR A + C LA+L + AVD PKT
Sbjct: 684 HNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKT 743
Query: 885 GKIVTMPSHLKPKKYPDFMEI-EEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
G +PS L+PK+YPDFM+ + TY S +++G+L+R++K + +S + I
Sbjct: 744 GVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVK----DKAPQASSIAIFTR 799
Query: 944 DI---HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNS 999
D+ YD DLEV G D+ +A + K YD +L L+ Y + + E M +
Sbjct: 800 DVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKT 859
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWV 1059
+ + E + + A RKE R F++ N ++ KASAWY VTYH +
Sbjct: 860 FDRRKDAEAISVAVRALRKEARTWFKRRNDIDDML---------PKASAWYHVTYHPTY- 909
Query: 1060 KKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLA 1110
QG R +SF W D L +IK +E A +++PV NL+
Sbjct: 910 ---WGCYNQGLKRD-HFISFPWCVYDQLIQIK---KEKA---RNRPVLNLS 950
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 331/990 (33%), Positives = 496/990 (50%), Gaps = 153/990 (15%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLD-----DDDPWIRTTDFSPSGAIGQCNSKQR 269
+++ + +P+I K+D + + F ++D D+ WIRTTDF+ S IGQ +
Sbjct: 170 LVIQVIGAPKIF---EKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAF-- 224
Query: 270 VQEDCLSQPVTIREEPDFE-----------------------------VPVEDPFFCMHY 300
CL PV + PDF VPV DP
Sbjct: 225 ----CLELPVHL-NVPDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFD- 278
Query: 301 KEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQP--REVIVTALKHIYSYKRPVFD 358
+ FEI+F +N ++ L L + LL + R +I L+ ++ ++
Sbjct: 279 ---LPFEILFKLNTLVQNACLPGPALDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYE 335
Query: 359 AYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR----- 411
L+ + L KL P ++DD + + R+ +TP + Y+ +V++R
Sbjct: 336 PARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHY 395
Query: 412 ------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
FLRV+F+DE L+ + + LS +S ++T ++ R+ S+L DG
Sbjct: 396 SKYINNFLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDGIV 445
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
+ +++ FLAFSS+QLR++SAW F+ + + I+ WMG+F +N+AKYAAR+G FS
Sbjct: 446 IGDKKFEFLAFSSSQLRENSAWMFAPIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFS 505
Query: 525 STHATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSA 580
S+ T+ + E++ +PD++ YVFSDGIGKI+ + A VA+ L PSA
Sbjct: 506 SSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLT-EFSPSA 563
Query: 581 YQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITL 640
+QIRY GYKGVVA P + ++SLR SM KF+S +T L++ +W+++QP ++NRQ+ITL
Sbjct: 564 FQIRYGGYKGVVAVDP--NSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITL 621
Query: 641 LSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQT 699
LSTL V D +F Q + +L+ +L A E L + E N ++ G+KP
Sbjct: 622 LSTLGVEDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDA 681
Query: 700 EPHLQGML----TYELGELKECQCFIQVSESSLENCFS------------------KHGS 737
EP L ML +L EL+ S+ C + G
Sbjct: 682 EPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGR 741
Query: 738 RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
RF +I G VV+AKNPCL PGDVR+LEAV+ P L+H+ DC+VFPQKG RPH NE
Sbjct: 742 RF-------IITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNEC 794
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQN 844
SGSDLDGD+Y+V WD+ LIPP ++ PM+ TP A+ L ++ + +
Sbjct: 795 SGSDLDGDIYFVCWDQELIPP--RTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDS 852
Query: 845 LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME 904
LG I NAH AD+ AF + CI LA+ + AVD PKTG +P HL K+YPDFME
Sbjct: 853 LGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFME 912
Query: 905 IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADAR 964
+ TY+S ++G+L+R++K IS+ S ++ YD D+EV G ++ +A
Sbjct: 913 KPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVALKSYDKDMEVDGFEEYVDEAF 971
Query: 965 NQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFR 1021
+ K +YD +L L+ Y + + I M K ++++ E + + A RKE
Sbjct: 972 HYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKETL 1029
Query: 1022 QVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAW 1081
+F + E KASAWY +TYH + L +G R LSFAW
Sbjct: 1030 SLFNATEEENE----------SAKASAWYHITYHSSY----WGLYNEGLNRD-HFLSFAW 1074
Query: 1082 IANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
D L RIK N G+ + L R
Sbjct: 1075 CVYDKLVRIK-----KTNAGRRQRQETLER 1099
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 325/954 (34%), Positives = 479/954 (50%), Gaps = 145/954 (15%)
Query: 246 DDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFE----------------- 288
D+ WIRTTDF+ S IGQ + CL PV + PDF
Sbjct: 193 DEQWIRTTDFTSSSCIGQSTAF------CLELPVHL-NVPDFRENFANYAEHRASPFLIE 245
Query: 289 ------------VPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRC 336
VPV DP + FEI+F +N ++ L L + LL
Sbjct: 246 SGSSYSSNANKLVPVVDPPPGFD----LPFEILFKLNTLVQNACLPGPALDLDVYQLLNP 301
Query: 337 QP--REVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRL 392
+ R +I L+ ++ ++ L+ + L KL P ++DD + + R+
Sbjct: 302 KKIDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRV 361
Query: 393 VITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDI 441
+TP + Y+ +V++R FLRV+F+DE L+ + + LS
Sbjct: 362 QVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLS---------- 411
Query: 442 TSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIK 501
+S ++T ++ R+ S+L DG + +++ FLAFSS+QLR++SAW F+ + + I+
Sbjct: 412 PRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSAHIR 471
Query: 502 NWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIK----RNGYVFSDGIG 556
WMG+F +N+AKYAAR+G FSS+ T+ + E++ +PD++ YVFSDGIG
Sbjct: 472 AWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDGIG 530
Query: 557 KITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC 616
KI+ + A VA+ L PSA+QIRY GYKGVVA P + ++SLR SM KF+S
Sbjct: 531 KISAEFARRVAKKCGLT-EFSPSAFQIRYGGYKGVVAVDP--NSSKKLSLRKSMSKFESE 587
Query: 617 HTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
+T L++ +W+++QP ++NRQ+ITLLSTL + D +F Q + +L+ +L A E L
Sbjct: 588 NTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVVDRLDAILTDPLEAHEAL 647
Query: 677 -TASCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLENC 731
+ E N ++ G+KP EP L ML +L EL+ S+ C
Sbjct: 648 GLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGC 707
Query: 732 FS------------------KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDR 773
+ G RF +I G VV+AKNPCL PGDVR+LEAV+
Sbjct: 708 LDETRTLEYGQVVVQYSDPMRPGRRF-------IITGPVVVAKNPCLHPGDVRVLEAVNV 760
Query: 774 PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA 833
P L+H+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD+ LIPP ++ PM+ TP A
Sbjct: 761 PALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPP--RTSEPMDYTPEPA 818
Query: 834 KPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVD 880
+ L ++ + +LG I NAH AD+ AF + CI LA+ + AVD
Sbjct: 819 QILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVD 878
Query: 881 SPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDI 940
PKTG +P HL K+YPDFME + TY+S ++G+L+R++K IS+ S +
Sbjct: 879 FPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTL 937
Query: 941 NPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKY 997
+ YD D+EV G ++ +A + K +YD +L L+ Y + + I M K
Sbjct: 938 DVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKS 997
Query: 998 NSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHRE 1057
++++ E + + A RKE +F + E KASAWY VTYH
Sbjct: 998 FTKRRD--AESIGRAVRALRKETLSLFNATEEENE----------SAKASAWYHVTYHSS 1045
Query: 1058 WVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
+ L +G R LSFAW D L RIK N G+ + L R
Sbjct: 1046 Y----WGLYNEGLNRD-HFLSFAWCVYDKLVRIK-----KTNAGRRQRQETLER 1089
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 461 bits (1186), Expect = e-126, Method: Compositional matrix adjust.
Identities = 332/960 (34%), Positives = 499/960 (51%), Gaps = 118/960 (12%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS-----KQR 269
+LL L +PRI Y+ +D F DD W+RTTDF+PS IG +S +
Sbjct: 166 LLLQLFGAPRI-YKRLEDSC---YSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNG 220
Query: 270 VQEDCLSQPVTIREEPDFEVPVEDPFF-----------CMHYKEGVS--FEIMFLVNAVM 316
VQ S+ +E + ++ F +H EG+ ++I+F +++++
Sbjct: 221 VQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLI 280
Query: 317 HKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNP 374
G L+ +FF L+ + R + I AL+ +Y K +D L + + +K
Sbjct: 281 QHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGR 340
Query: 375 KLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEG 421
+L + P +DD + VRR+V+TP K Y+ +V++R FLRV+F+DE
Sbjct: 341 QLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEE 400
Query: 422 LQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQL 481
+ +++ L + + T N +T +++R+ S L +GF + +R+ FLAFSS+QL
Sbjct: 401 WEKIHSTDL------LPRASTGNG--TRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQL 452
Query: 482 RDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHE 540
RD+S W F+ + DI+ WMG+F +N+AKYAAR+G F S+ T+ + EV+
Sbjct: 453 RDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVE-V 511
Query: 541 LPDI----KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWP 596
+PD+ Y+FSDGIGKI+ D A V +K PS++QIRY GYKGVVA P
Sbjct: 512 IPDVACSLHGTNYIFSDGIGKISADFAHRVT--IKCGLQYTPSSFQIRYGGYKGVVAVDP 569
Query: 597 AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA 656
+++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL V D++ Q
Sbjct: 570 YS--SMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQN 627
Query: 657 SMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGEL 714
+L+ +L S A E L S E N ML+ G+ P EP L ML T+ +L
Sbjct: 628 EAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKL 687
Query: 715 KECQCFIQV---SESSLENC---------------FSKHGSR--FAETKKLQ-------- 746
+ + ++ + ++ C FS G R F E+
Sbjct: 688 LDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCD 747
Query: 747 -VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
++ G VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG RPH NE SGSDLDGD
Sbjct: 748 FILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 807
Query: 806 LYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAH 852
+Y+V WD +LIPP + M+ TPA L T ++ + +LG I NAH
Sbjct: 808 IYFVCWDPDLIPP--RQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAH 865
Query: 853 VVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYK 912
VV ADR A + C LA+L + AVD PKTG +PS L+PK+YPDFME + TY
Sbjct: 866 VVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYP 925
Query: 913 SNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDG 972
S K++G+L++++K + S+++ + YD+D+ V G D+ +A K YD
Sbjct: 926 SEKVIGKLFQKVKNKTPQASSIAT-FTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDN 984
Query: 973 QLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDF 1031
+L L+ Y + + E M + + + E + + RKE R F K SD
Sbjct: 985 KLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWF-KRRSDI 1043
Query: 1032 ELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
+ ++L KASAWY VTYH + L +G R +SF W D L +IK
Sbjct: 1044 D------DML--AKASAWYHVTYHHTY----WGLYNEGLKRD-HFISFPWCVYDQLIQIK 1090
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 325/927 (35%), Positives = 484/927 (52%), Gaps = 120/927 (12%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS-----KQR 269
+L+ L +PRI R F DD W+RTTDF+PS IG +S ++
Sbjct: 165 LLIQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRG 219
Query: 270 VQEDCLSQPVTIREEPDFEVPVEDPF-FCMHYK----------EGVS--FEIMFLVNAVM 316
V + E + + ++ F F + K EG++ ++I+F +++++
Sbjct: 220 VHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLV 279
Query: 317 HKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNP 374
G + L+ FF L+ Q R V I AL+ +Y K +D L + + +K
Sbjct: 280 QHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGR 339
Query: 375 KLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEG 421
+ + P +DD + VRR+++TP K Y+ +V++R FLRV+F+DE
Sbjct: 340 QPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEE 399
Query: 422 LQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQL 481
+ + + L + K T N +T +++R+ S + GF + +++ FLAFSS+QL
Sbjct: 400 WEKLYSTEL------LPKASTGNGI--RTNIYERILSTMQKGFVIGDKKFEFLAFSSSQL 451
Query: 482 RDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHE 540
RD+S W F+ + DI+ WMG+F+ KN+AKYAAR+G F S+ T+ + E++
Sbjct: 452 RDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE-V 510
Query: 541 LPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAK 598
+PD+K +G YVFSDGIGKI+ D A VA L +P SA+QIRY GYKGVVA P
Sbjct: 511 IPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKGVVAVDPYS 568
Query: 599 DDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASM 658
+++SLR SM K++S + L++ W+++QP +LNRQ+ITLLSTL V D+I Q
Sbjct: 569 --SMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEA 626
Query: 659 ASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGELKE 716
+L+ +L S A E L S E N ML+ G+ P EP L ML T+ +L +
Sbjct: 627 VDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLD 686
Query: 717 C---------------------------QCFIQVSESSLENCFSKHGSRFAETKKLQ--- 746
Q F+Q + + FS+ F ++
Sbjct: 687 LRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHRE-FSEDLHPFNNSRSTNCNF 745
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
++ G VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG RPH NE SGSDLDGD+
Sbjct: 746 ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 805
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHV 853
Y+V WD+++IPP + PME PA + L T ++ + +LG I NAHV
Sbjct: 806 YFVCWDQDMIPP--RQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHV 863
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEI-EEYQTYK 912
V ADR A + C LA+L + AVD PKTG +PS +PK+YPDFM+ + TY
Sbjct: 864 VFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQWRPKEYPDFMDKPPDKTTYI 923
Query: 913 SNKILGRLYRQIKGAYDENISVSSEVDINPVDI---HYDTDLEVPGSVDFTADARNQKCS 969
S +++G+LYR++K + +S I D+ YD DLEV G D+ +A + K
Sbjct: 924 SERVIGKLYRKVK----DKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTE 979
Query: 970 YDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMN 1028
YD +L L+ Y + + E M + + + E + + A RKE R F++ N
Sbjct: 980 YDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRN 1039
Query: 1029 SDFELSDNEKNVLYEQKASAWYQVTYH 1055
++ KASAWY VTYH
Sbjct: 1040 DIDDML---------PKASAWYHVTYH 1057
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 332/983 (33%), Positives = 507/983 (51%), Gaps = 122/983 (12%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS-----KQR 269
+LL L+ +PRI Y+ +D F DD W+RTTDF+PS IG +S
Sbjct: 166 LLLQLSGAPRI-YKRLEDSC---YSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNG 220
Query: 270 VQEDCLSQPVTIREEPDFEVPVEDPFF------------CMHYKEGVS--FEIMFLVNAV 315
V+ S+ +E +V ++ F +H EG+ ++I+F ++++
Sbjct: 221 VRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSL 280
Query: 316 MHKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECLIKN 373
+ G L+ +FF L+ + R + I AL+ +Y K +D L + + +K
Sbjct: 281 IQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKR 340
Query: 374 PKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDE 420
+L + P +DD + VRR+++TP K Y+ +V++R FLRV+F+DE
Sbjct: 341 RQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 400
Query: 421 GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQ 480
+ +++ L + + T N +T ++ R+ S L +GF + +++ FLAFSS+Q
Sbjct: 401 EWEKIHSTDL------LPRASTGNGV--RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQ 452
Query: 481 LRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDH 539
LRD+S W F+ + DI+ WMG F +N+AKYAAR+G F S+ T+ + EV+
Sbjct: 453 LRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVE- 511
Query: 540 ELPDI----KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACW 595
+PD+ Y+FSDGIGKI+ D A VA +K PS +QIRY GYKGVVA
Sbjct: 512 VIPDVVCSLHGTNYIFSDGIGKISADFARRVA--VKCGLQYTPSCFQIRYGGYKGVVAVD 569
Query: 596 PAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQ 655
P +++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL V D++F Q
Sbjct: 570 PYS--SMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQ 627
Query: 656 ASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGE 713
+L+ +L + A E L S E N ML+ G+ P EP L ML T+ +
Sbjct: 628 NEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASK 687
Query: 714 LKEC---------------------------QCFIQVSESSLENCFSKHGSRFAETKKLQ 746
L + Q F+Q + + F + F ++
Sbjct: 688 LLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQ-FYEESHPFNDSGSTN 746
Query: 747 ---VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
++ G VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG RPH NE SGSDLD
Sbjct: 747 CDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLD 806
Query: 804 GDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICN 850
GD+Y+V WD +L+PP + PM+ TPA + L T ++ + +LG I N
Sbjct: 807 GDIYFVCWDPDLVPP--RQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIAN 864
Query: 851 AHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQT 910
AHVV ADR A + C LA+L + AVD PKTG +PS L+PK+YPDFME + T
Sbjct: 865 AHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPT 924
Query: 911 YKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSY 970
Y S K++G+L++++K + S+++ ++ YD D+ V G D+ +A K Y
Sbjct: 925 YHSEKVIGKLFQKVKDKTPQASSIAN-FTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEY 983
Query: 971 DGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNS 1029
D +L L+ Y + + E M + + + + + + + RKE R F K S
Sbjct: 984 DNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWF-KRRS 1042
Query: 1030 DFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLAR 1089
D + ++L KASAWY VTYH + +G R +SF W D L +
Sbjct: 1043 DID------DML--AKASAWYHVTYHHTY----WGFYNEGLKRD-HFISFPWCIYDQLIQ 1089
Query: 1090 I-KIKCQEMANIGKSKPVNNLAR 1111
I K K ++ + S N L+R
Sbjct: 1090 IKKAKARKKPVLHLSSLGNQLSR 1112
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 357/1077 (33%), Positives = 528/1077 (49%), Gaps = 195/1077 (18%)
Query: 161 VDPFDG-TCKF-CFTKDTAFALKSSAEHAVIKCEFKVFLVREIDIVKQYSELPRVAILLW 218
VD DG T F C D FA+ S E V L R Q+ +L+
Sbjct: 118 VDHMDGITLNFGCQISDDKFAVLGSTE---------VVLHRPYGQNAQF-------LLIQ 161
Query: 219 LASSPRI-------CYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS----- 266
L +PRI CY K+ DD W+RTTDF+PS IG +S
Sbjct: 162 LFGAPRIYKRLENSCYSFFKET-----------PDDQWVRTTDFAPSW-IGLSSSLCLQF 209
Query: 267 KQRVQEDCLSQPVTIREEPDFEVPVEDPF-FCMHYK----------EGVS--FEIMFLVN 313
++ V + E + + ++ F F + K EG++ ++I+F ++
Sbjct: 210 RRGVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKIS 269
Query: 314 AVMHKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECLI 371
+++ G + L FF L+ Q R V I AL+ +Y K +D L + + +
Sbjct: 270 SLVQHGCIPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYL 329
Query: 372 KNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFM 418
K + + P +DD + VRR+++TP K Y+ +V++R FLRV+F+
Sbjct: 330 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 389
Query: 419 DEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSS 478
DE + + + L + K T N +T +++R+ S L GF + +++ FLAFSS
Sbjct: 390 DEEWEKLYSTDL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFLAFSS 441
Query: 479 NQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEV 537
+QLRD+S W F+ + DI+ WMG+F+ KN+AKYAAR+G F S+ T+ + E+
Sbjct: 442 SQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEI 501
Query: 538 DHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACW 595
+ +PD+K +G YVFSDGIGKI+ D A VA L +P SA+QIRY GYKGVVA
Sbjct: 502 E-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKGVVAVD 558
Query: 596 PAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQ 655
P +++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL V D++ Q
Sbjct: 559 PYS--SMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQ 616
Query: 656 ASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGE 713
+L+ +L S A E L S E ML+ G+ P EP L ML T+ +
Sbjct: 617 KEAVDQLDAILHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEPFLSMMLQTFRASK 676
Query: 714 LKEC---------------------------QCFIQVSESSLENCFSKHGSRFAETKKLQ 746
L + Q F+Q + + FS+ F ++
Sbjct: 677 LLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHRE-FSEDLHPFNNSRSTN 735
Query: 747 ---VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKG-------------- 789
++ G VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG
Sbjct: 736 CNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNCLPTSE 795
Query: 790 -------------------DRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP 830
DRPH NE SGSDLDGD+Y+V WD+++IPP + PME P
Sbjct: 796 VEVKSAYTLPSSDPTLCFDDRPHPNECSGSDLDGDIYFVCWDQDMIPP--RQVQPMEYPP 853
Query: 831 AEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
A + L T ++ + +LG I NAHVV ADR A + C LA+L +
Sbjct: 854 APSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSI 913
Query: 878 AVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSE 937
AVD PKTG +PS L+PK+YPDFM+ + TY S +++G+L+R++K + +S
Sbjct: 914 AVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVK----DKAPQASS 969
Query: 938 VDINPVDI---HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWS 993
+ I D+ YD DLEV G D+ +A + K YD +L L+ Y + + E
Sbjct: 970 IAIFTRDVARRSYDVDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1029
Query: 994 MPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVT 1053
M + + + E + + A RKE R F++ N ++ KASAWY VT
Sbjct: 1030 MKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDIDDML---------PKASAWYHVT 1080
Query: 1054 YHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLA 1110
YH + QG R +SF W D L I+IK ++ N +PV NL+
Sbjct: 1081 YHPTY----WGCYNQGLKRD-HFISFPWCVYDQL--IQIKKEKALN----RPVLNLS 1126
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 335/966 (34%), Positives = 485/966 (50%), Gaps = 128/966 (13%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQ----------- 263
+L+ L +P+I + D+ L F DD W+R DF+PS +IGQ
Sbjct: 168 LLIQLLDAPQI----YEKDVSALSYFKETPDDQ-WVREIDFTPSCSIGQSSALCLELPHG 222
Query: 264 ------CNSKQRVQEDCLSQPVTIREEPDFE-----VPVEDPFFCMHYKEGVSFEIMFLV 312
C + R +E+ + + F VP+ P + F+I+F +
Sbjct: 223 SQLPNFCENFARYKEN--DRKFILESGASFSGNLHLVPIVGP----PQGSNLPFKILFKI 276
Query: 313 NAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECL 370
N ++ G L+ L +FF + Q + I AL+ +Y + ++ L +
Sbjct: 277 NTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY 336
Query: 371 IKNPKLNEGPKNID-DIAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFM 418
I ++D + VRR+ ITP K Y+ +V++R FLRV+F+
Sbjct: 337 ISKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFL 396
Query: 419 DEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSS 478
DE + +++ V+S + SN ++TGV++R+ SIL +G + +++ FLA SS
Sbjct: 397 DENSEKIHSTVISPRM--------SNE-GRRTGVYRRILSILQNGIVIGDKKFDFLAVSS 447
Query: 479 NQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEV 537
+QLRD+SAW F+ + DI++ MG+F+ +N+AKYAAR+G FSS+ T+++ E+
Sbjct: 448 SQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEI 507
Query: 538 DHELPDIK--RNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVA 593
+ +PDI+ R+G YVFSDGIGKI+ +LA VA S PSA+QIRY GYKGVVA
Sbjct: 508 E-IIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNS-TPSAFQIRYGGYKGVVA 565
Query: 594 CWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWT 653
P ++SLR SM K++S +T+L++ SW++++P FLNRQ+ITLLSTL V D +F
Sbjct: 566 VDPTSSR--KLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEK 623
Query: 654 VQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYEL 711
Q +L+ +L A E L S E N ML G+KP EP L ML T+
Sbjct: 624 KQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRA 683
Query: 712 GELKEC---------------------------QCFIQVSESSLENCFSKHGSRFAETKK 744
+L E + F+Q+S + F +
Sbjct: 684 AKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSH 743
Query: 745 LQ--VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDL 802
++ G VV+AKNPCL PGDVRIL AVD P LHH+ DC+VFPQKG RPH +E SGSDL
Sbjct: 744 HDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDL 803
Query: 803 DGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQIC 849
DGD+Y+V WD +LIPP + PM+ TPA K L T ++ + LG I
Sbjct: 804 DGDIYFVCWDHDLIPP--RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIA 861
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ 909
NAH V AD+ A C LAKL + A++ PKTG +P HL K+YPDFME
Sbjct: 862 NAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKP 921
Query: 910 TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCS 969
TY+S ++G+L+R++K N V S + YD D+EV G D+ DA K
Sbjct: 922 TYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQ-SYDADMEVDGFEDYVRDAFYYKSQ 980
Query: 970 YDGQLNGLLGQYNVNRKE---FRHIWSMPK-YNSRKQGELQERLKHSYSAFRKEFRQVFE 1025
YD +L L+ + + I M K ++ RK E + + + RKE R F
Sbjct: 981 YDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEA---IALAVRSLRKEARTWFN 1037
Query: 1026 KMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIAND 1085
KM S ++ + ASAWY VTYH + +G LSF W D
Sbjct: 1038 KMGSGTYAGADDVYAI----ASAWYHVTYHPYY----WGCYNEGMYHD-HFLSFPWCVYD 1088
Query: 1086 YLARIK 1091
L +IK
Sbjct: 1089 KLIQIK 1094
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 353/1076 (32%), Positives = 528/1076 (49%), Gaps = 182/1076 (16%)
Query: 127 PLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCF-TKDTAFALKSSAE 185
P ++ D+ V G ++D+ V W P F F + T D + L+ S+E
Sbjct: 93 PHRMDDIVVHFGCQTSKDKLSVLWEHPNVSVKFGSRLRKMYIFFNYLTMD--YKLQISSE 150
Query: 186 HAVIKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLLDD 245
++ + E + D+ K++ +L L +P I + D+ F D
Sbjct: 151 -SISRIELR----HSDDLTKKF-------LLFQLRGAPMI----YEKDVSKSKYFKEACD 194
Query: 246 DDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFE------VPVEDPFFCMH 299
+ W R DF+PS +IGQ ++ C P +I E P F V+D F +
Sbjct: 195 NH-WFRGVDFTPSSSIGQSSTL------CFELPQSI-EVPKFNQHYRNYSEVDDSIFTLE 246
Query: 300 YKEGVS------------------FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV 341
G S ++I+F +N+++ G L + + F L+ PR V
Sbjct: 247 KHLGFSSNFKFVPIVIPPEGFNLPYKILFKINSLIQHGCLPVLAIDINLFHLV--DPRRV 304
Query: 342 IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKN---------------IDD- 385
L++I S A KL ++EC + + E N +DD
Sbjct: 305 ---RLEYIES-------ALHKLDQMKECCYEPAQWLEKQYNKYSTNSLVPLSSAISLDDG 354
Query: 386 IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYV 434
+ V R+ +TP+K Y+ ++++R FLRV+F+DE + +++
Sbjct: 355 LVYVHRVQVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMDKLHS------- 407
Query: 435 APIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGE 494
A +V +S ++T + +RV S L +G + +++ FLAFS +QLRD+S W F+
Sbjct: 408 ADLVPRSSSTDVDRETKLHERVLSTLKNGIAIGDKKFEFLAFSPSQLRDNSVWMFASRTG 467
Query: 495 TSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIK-RNG---Y 549
+ DI+ WMGEF +N+AKYAAR+G FSS+ TV + E++ +PDI+ R G Y
Sbjct: 468 LTASDIRKWMGEFHEIRNVAKYAARLGQSFSSSRETVSVGEHEIE-IIPDIELRRGETKY 526
Query: 550 VFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGS 609
F+DGIGKI+ +LA EVA+ + PSA+QIRY GYKGVVA P ++SLR S
Sbjct: 527 CFTDGIGKISSELAQEVAKKCGCRDNNIPSAFQIRYGGYKGVVAIDPT--SSTKLSLRKS 584
Query: 610 MKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM---- 665
M K+KS +T L++ +W++++P +LNRQIITLLSTL V D +F Q + ++L ++
Sbjct: 585 MFKYKSENTKLDVLAWSKYKPCYLNRQIITLLSTLGVKDRVFRKKQREILNQLKMISTKP 644
Query: 666 LVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY---------------- 709
L+ D+ F E N ML GF EP L ML
Sbjct: 645 LMVLDLMF------TGEITNILREMLICGFHQTKEPFLSMMLQTLCASKLQELQLKTRIL 698
Query: 710 ------------ELGELKECQCFIQVSES---SLENCFSKHGSRFAETKKLQVINGFVVI 754
E LK + F+Q++ + S +R+ K ++ G VV+
Sbjct: 699 VKKGRALLGCLDETRTLKYGEVFVQIAHQRNKQIHAMPSLSSNRYGGNKSKHIVKGKVVV 758
Query: 755 AKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
AKNPCL PGDVRIL AVD P LHH+ DC+VFPQKG RPH NE SGSDLDGD+Y+V+WD +
Sbjct: 759 AKNPCLHPGDVRILRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVSWDPD 818
Query: 815 LIPPSKKSCPPMECTPAEAKPLTCHVNHQ-------------NLGQICNAHVVHADRSEY 861
LIPP +++ PM+ P++ + V Q LG + +AH V AD+
Sbjct: 819 LIPPHQEN--PMDHAPSQVMNVDHDVTLQEVQEYFAHYIVEDRLGIVASAHTVFADKDPE 876
Query: 862 GAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLY 921
A C LAKL + AVD K+G +P HL+ ++YPDFME + +Y+SN I+G+LY
Sbjct: 877 KAMSPACTELAKLHSIAVDFAKSGVPAEIPQHLRVEEYPDFMEKPDKPSYQSNSIIGKLY 936
Query: 922 RQIKG-AYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQ 980
R+++ A +N++ + + YD D+E+ G +TA A K YD +L L+
Sbjct: 937 REVRNVAQHKNLNKTFTRRV--ARQSYDPDMEIDGFEKYTATACEYKNMYDFKLGNLMDY 994
Query: 981 YNVNRKE---FRHIWSMPK-YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDN 1036
Y + + +I M K +N RK E + H+ + RKE R F M + S++
Sbjct: 995 YGIETEAEIISGNILKMSKSFNERKD---LEGINHAVMSLRKETRSWFNVMVNK---SNS 1048
Query: 1037 EKNVLYEQKASAWYQVTYH-REWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
+ Y ASAWY VTYH R W QG R LSF W +D L +IK
Sbjct: 1049 QGRDAY-AIASAWYLVTYHPRYWGS-----YNQGLNRG-HFLSFPWCVHDTLIQIK 1097
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 336/982 (34%), Positives = 493/982 (50%), Gaps = 127/982 (12%)
Query: 215 ILLWLASSPRICYRTAKDDIEV----LVPFDLLDDDDPWIRTTDFSPSGAIGQCNS---- 266
+L+ L +PRI R V L+ + D+ W+RTTDF+PS IG +S
Sbjct: 169 LLIQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLE 228
Query: 267 -----------------KQRVQEDCLSQPVTIREEPDFEVPVEDPFFCMHYKEGVS--FE 307
K+ L +T PD VP+ P GV+ +
Sbjct: 229 LPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDL-VPIVGP------SSGVNLPYN 281
Query: 308 IMFLVNAVMHKGILNQHQLSDSFFDLL--RCQPREVIVTALKHIYSYKRPVFDAYEKLKD 365
I+F VN ++ G L L D F+ L+ P I AL+ +Y K ++ + +
Sbjct: 282 ILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNE 341
Query: 366 VQECLIKNPKLNEGPKNIDD--IAEVRRLVITPTKAYWFLESKDVADR-----------F 412
+ + + P D + V ++ ITP K ++ +V++R F
Sbjct: 342 QYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNF 401
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV+F+DE L+ +++ +S +S + ++T ++ R+ S L +G + +++
Sbjct: 402 LRVSFVDEELEKIHSTDVS-------PRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFE 454
Query: 473 FLAFSSNQLRDHSAWFF-SKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATV 530
FLAFSS+QLR++S W F S++G T+ DI+ WMG F +N+A+YAAR+G F S+ T+
Sbjct: 455 FLAFSSSQLRENSCWMFASRLGLTAA-DIRAWMGSFHKIRNVARYAARLGQSFGSSTETL 513
Query: 531 EIPPTEVDHELPDIK--RNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA 586
+ E++ +PDI+ R G Y+FSDGIGKI+ + A +VA G P SA+QIRYA
Sbjct: 514 SVSSHEIE-IIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTP-SAFQIRYA 571
Query: 587 GYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNV 646
GYKGVVA P ++SLR SM K++S +T L++ + +++QP FLNRQ+ITLLSTL V
Sbjct: 572 GYKGVVAVDPTSSK--KLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGV 629
Query: 647 SDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQG 705
D F Q +L+ ML A E L S E N ML G++P EP L
Sbjct: 630 PDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSM 689
Query: 706 ML-TYELGELKEC---------------------------QCFIQVSESSLENCFSKHGS 737
ML T+ +L E Q F++ S S N +
Sbjct: 690 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDS-SD 748
Query: 738 RFAETKKLQ--VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTN 795
F+E + Q +I G VV+AKNPCL PGD+RIL+AVD P LHH+ DC+VFPQKG RPH N
Sbjct: 749 MFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPN 808
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNH 842
E SGSDLDGD+Y+V WD LIP + S PM+ TP L T ++ +
Sbjct: 809 ECSGSDLDGDIYFVCWDPELIPSQQIS--PMDYTPEPPLQLDHDVTIEEVEEYFTNYIVN 866
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
+LG I NAH HAD+ A E C+ LA+ + AVD PKTG +PS+L+ ++YPDF
Sbjct: 867 DSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDF 926
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTAD 962
ME + +Y+S ++G+L+R++K S+ S + YD D+EV G D+ D
Sbjct: 927 MEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTS-DVARQCYDPDMEVDGFEDYIDD 985
Query: 963 ARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFR 1021
A K +YD +L L+ Y + + E M S + E + + + +KE R
Sbjct: 986 AFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEAR 1045
Query: 1022 QVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAW 1081
F + S + ++ + KASAWY VTYH + +G R LSF W
Sbjct: 1046 SWFNEKGSGLDSQADD----VDAKASAWYHVTYHHNY----WGCYNEGMNRD-HFLSFPW 1096
Query: 1082 IANDYLARIKIKCQEMANIGKS 1103
D L I+IK + A I +S
Sbjct: 1097 CVYDKL--IQIKRRNSARIRRS 1116
>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 324/992 (32%), Positives = 500/992 (50%), Gaps = 151/992 (15%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPF--DLL-----DDDDPWIRTTDFSPSGAIGQCNS 266
AILL L +PRI TA V F D L D W+R DF+P+ + G+C++
Sbjct: 179 AILLQLTYAPRI--HTAFSGPAVYSRFKDDRLHACKEDAKFTWVRALDFTPNQSFGKCST 236
Query: 267 KQ-RVQEDCLSQPVT------------------IREEPDFEVPVED-PFFCMHYKEGVSF 306
++ ED L + + VP+ D P C VS+
Sbjct: 237 LVIKLDEDALMSYILNTLPFSGVLGELAISSMDVVGPSSKAVPLVDCPHGC-----SVSY 291
Query: 307 EIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYE----K 362
E++F +N+++H G + ++ F L P + + + + ++ + +
Sbjct: 292 EVLFRLNSLVHMGKIVAKHVNAKLFAFLEQVPLHISRRIFEKMSKLESTCYEPLQFIESE 351
Query: 363 LKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADR 411
LK L+ + + EG + R+ ITP+K Y ++ A
Sbjct: 352 LKLTHNALLSSKREGEG-----KLMRCYRIHITPSKIYCLGPEEEASNYVVKHHSEYASD 406
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
F+RVTF+DE ++ N +S A I + S F KTG++ R+ SIL +GF + +++
Sbjct: 407 FVRVTFVDEDWSKLSVNAIS---ARIEQGFFSQPF--KTGLYYRILSILKEGFIIGPKKF 461
Query: 472 SFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATV 530
FLAFS++QLR+ S W F+ + I+ WMG F ++++K AARMG FSS+ TV
Sbjct: 462 EFLAFSASQLREGSVWMFASNDSLNAESIRRWMGHFEEIRSVSKCAARMGQLFSSSRQTV 521
Query: 531 EIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA 586
E+ P +V+ E+PDI+ Y+FSDGIGK++ A E+A + LD + PPSA+QIR+
Sbjct: 522 EVRPWDVE-EIPDIEVTTNNTKYIFSDGIGKMSVRFAREIAYRIGLDHTNPPSAFQIRFG 580
Query: 587 GYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNV 646
GYKGV+A P+ +SLR SM+KF+S L I SW++ QP ++NR+II+LLSTL +
Sbjct: 581 GYKGVIAVDPSSFRN--LSLRPSMRKFESDCRMLNITSWSKSQPCYVNREIISLLSTLGI 638
Query: 647 SDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM 706
DE+F +Q +L+ ML +VA VL + + TAA ML G++P +EP+L +
Sbjct: 639 RDEVFELMQQDDMRELDEMLTNKEVALSVLGKIGSAETKTAADMLLQGYEPISEPYLLMI 698
Query: 707 LTY----------------------------ELGELKECQCFIQVSESSLENCFSKHGSR 738
L E G+LK Q +I++++++ E ++
Sbjct: 699 LKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGKLKYGQVYIRITKNNKEQKENEQPYF 758
Query: 739 FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH--HLCDCLVFPQKGDRPHTNE 796
+ K + G V ++KNPCL PGDVR+LEAV P LH L DC+VFPQ+G+RPH NE
Sbjct: 759 SEDDGKTVTLVGKVAVSKNPCLHPGDVRVLEAVYDPGLHAKKLVDCVVFPQRGERPHPNE 818
Query: 797 ASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ------------- 843
SG DLDGDLY+VTWD+ LIP +K+ PM+ T A + + V +
Sbjct: 819 CSGGDLDGDLYFVTWDDKLIP--EKADAPMDYTGARPRIMDHVVTLEEIQQHVVNYMLSD 876
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFM 903
+LG I NAH++HADR A C+ LA L + AVD KTG +P L+P+++PDFM
Sbjct: 877 SLGAISNAHLIHADRDPMKARSPECLQLAALHSMAVDFAKTGAPAELPRSLRPREFPDFM 936
Query: 904 EIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADA 963
E + Y SN +LG+LYR + + +++S+V +P YD +L VPG +F DA
Sbjct: 937 ERWDKPMYISNGVLGKLYRAAVSRMESSHALASQVQSSPT---YDRELAVPGFEEFLEDA 993
Query: 964 RNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFR 1017
Y +L L+ Y ++ R+ + + ++ ++++R+ S +A
Sbjct: 994 EKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRNRLLYLRKDRKRYSDMKDRIFDSVNALH 1053
Query: 1018 KEFRQVFEK-MNSDFELSDNEKNVLYEQKASAWYQVTY---HREWVKKSLDLLEQGSARS 1073
+E R F+ + ++ E S + ASAWY+V Y HR KK
Sbjct: 1054 EEVRGWFKNCLKAEEEAS---------RVASAWYRVAYHPDHRRPEKKQ----------- 1093
Query: 1074 VVLLSFAWIANDYLARIKI----KCQEMANIG 1101
SF WI D L IK +C+++ +
Sbjct: 1094 --FWSFPWIICDKLLAIKATKSNRCRKLVGVA 1123
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 451 bits (1160), Expect = e-123, Method: Compositional matrix adjust.
Identities = 334/994 (33%), Positives = 491/994 (49%), Gaps = 163/994 (16%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDD----------DPWIRTTDFSPSGAIGQC 264
+L+ L +PRI R A+ F L+ +D W R TDF+PS +IGQ
Sbjct: 169 LLIQLFGAPRIYERDARS-------FGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQS 221
Query: 265 NSKQRVQEDCLSQPVTIREEPDFE---------------------------VPVEDPFFC 297
+ CL P R+ P+F VPV P
Sbjct: 222 AAL------CLEIPYG-RQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRT 274
Query: 298 MHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ--PREVIVTALKHIYSYKRP 355
++ + + I+F +N ++ +G L L SF+ ++ Q VI ALK + K
Sbjct: 275 IN----LPYTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHALKKLLHLKEC 330
Query: 356 VFDAYEKLKD--VQECLIKNP------KLNEGPKNIDDIAEVRRLVITPTKAYW------ 401
++ + L + + +KNP LNEG + V R+ +TP K Y+
Sbjct: 331 CYNPSKWLDEEYRKYFKLKNPPQPPILTLNEG------LVYVHRVQVTPCKVYFCGPEVN 384
Query: 402 -----FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRV 456
D D FLRV+F+DE L M + LS + ++D KT +FKR+
Sbjct: 385 ISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLED-------GKTKIFKRI 437
Query: 457 KSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKY 515
S+L DG + +++ FLA+SS+QLR+++AW F+ E + I+ WMG+F +N+AKY
Sbjct: 438 LSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKY 497
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKRNG-----YVFSDGIGKITPDLAMEVAQIL 570
AAR+G F S+ T+ + EV +PDI+ YVFSDGIGKI A +VA+
Sbjct: 498 AARLGQSFGSSTETLSVSRREVK-VIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKC 556
Query: 571 KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQP 630
+ +P SA+QIRYAG+KGV++ P +++SLR SM K++S T L++ SW+++ P
Sbjct: 557 GIRHTP--SAFQIRYAGFKGVISVDPT--SSVKLSLRNSMLKYESTDTKLDVLSWSKYHP 612
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML---VASDVAFEVLTASCAEQGNTA 687
FLNRQ+ITLLSTL V D +F + Q + +L+ + + + A E++ S E
Sbjct: 613 CFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELM--SPGENTKIL 670
Query: 688 AIMLSAGFKPQTEPHLQGML-TYELGELKECQCFIQV---SESSLENCFS-----KHGSR 738
M+ G+KP +EP L+ ML T+ +L E + ++ + ++ C ++G
Sbjct: 671 KEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEV 730
Query: 739 FAETKKLQ------------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
F + Q ++ G VV+AKNPCL PGDVR+L AVD P LHH+
Sbjct: 731 FVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMI 790
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHV 840
DC+VFPQKG RPH NE SGSDLDGD+Y+V WD +LIPP + PM+ TP ++ L V
Sbjct: 791 DCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPP--QQVEPMDYTPVPSQVLDHDV 848
Query: 841 NHQ-------------NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
+ +LG I NAH AD+ A CI LAKL + AVD PKTG
Sbjct: 849 TMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAVDFPKTGVP 908
Query: 888 VTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP--VDI 945
+P++L+ K+YPDFM+ + TY+S +LG+L+R + + NI + P
Sbjct: 909 ALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLD-SIGPNIKNIRSFNYTPEMARQ 967
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGE 1004
YD D+EV G ++ DA K +YD +L L+ + + + E S+ S
Sbjct: 968 DYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKN 1027
Query: 1005 LQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLD 1064
E + + + RKE R F N +L +Y +ASAWY VTYH + S
Sbjct: 1028 EAESIILAVKSLRKEARGWF---NEKADLHYGHHTNVY-ARASAWYFVTYHHTYWGWS-- 1081
Query: 1065 LLEQGSARSVVLLSFAWIANDYLARI---KIKCQ 1095
G LSF W D L RI KI C+
Sbjct: 1082 ---DGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1112
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 361/1123 (32%), Positives = 531/1123 (47%), Gaps = 175/1123 (15%)
Query: 76 HAFVHFATST----YITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLP 131
+A V F ++T I+ A + +L RA +V + P+ + L
Sbjct: 48 YAIVQFTSATQAELIISLANQRLWYGSSYLKARATEVDIVPK---------PRTYMYTLE 98
Query: 132 DVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKC 191
++ + G V+ ++F V W G F + + F LK + ++
Sbjct: 99 ELLLCFGCQVSTEKFRVLWEGNVDLVTFGIG----------MRKMNFHLKYKSVEYRLEL 148
Query: 192 EFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEV----LVPFDLLDDDD 247
+++ ++ + S +L+ L+ +PRI + A + ++ L+ F DD
Sbjct: 149 SYEIIWQIQLHCPRDQS---MKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDD 205
Query: 248 PWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEP-------------DFEVPVEDP 294
W+RTTDF+ S + CL P + P +F + ED
Sbjct: 206 QWVRTTDFT------SSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHEFRLIDEDA 259
Query: 295 FFCM---------HYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR---CQPREVI 342
F + ++I+F +NA++ G + L SF+ L+ E +
Sbjct: 260 NFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRIEFV 319
Query: 343 VTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDD-IAEVRRLVITPTKAYW 401
AL+ ++ K +D L + ++P N ++DD + VRR+ ITP K ++
Sbjct: 320 EHALEKLFHLKECNYDPSNFLTEQYRKYSRHPP-NSPVISLDDGLVYVRRVQITPCKVFF 378
Query: 402 FLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKT 450
+V++R FLRV+F+DE M + L + ++S S KT
Sbjct: 379 CGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDL-------LPRMSSKSEDGKT 431
Query: 451 GVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-A 509
+++R+ S+L +G + + + FLAFSS+QLRD+S W F+ + I+ WMG+F
Sbjct: 432 DIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHI 491
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIK-RNG---YVFSDGIGKITPDLAME 565
KN AKYAAR+G F S+ + + E + +PDI+ + G YVFSDGIGKI+ A E
Sbjct: 492 KNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGEIKYVFSDGIGKISSKFAKE 550
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW 625
VA K PSA+QIRY GYKGVVA P I++SLR SM KF+S +T L++
Sbjct: 551 VAA--KCGFQAVPSAFQIRYGGYKGVVAVDPYST--IKLSLRKSMCKFESDNTKLDVLGH 606
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQG 684
+++QP FLNRQ+ITL+STL V DEIF Q+ +L+ +L A E L S E
Sbjct: 607 SKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENT 666
Query: 685 NTAAIMLSAGFKPQTEPHLQGML-TYELGELKEC-------------------------- 717
N ML G++P EP+L ML T+ +L E
Sbjct: 667 NILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEY 726
Query: 718 -QCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
Q F+Q+S N + VI G V +AKNPCL PGDVR+L+AV+ P L
Sbjct: 727 GQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGL 786
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
+H+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD LIP + PPM+ TPA L
Sbjct: 787 YHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP--SRQIPPMDYTPAPPNEL 844
Query: 837 TCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
V ++ LG I NAH AD+ + A C+ LAKL + AVD PK
Sbjct: 845 DRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPK 904
Query: 884 TGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
TG +PSHL K++PDFME + +Y+SNK++G+L+R +K DI P
Sbjct: 905 TGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVK-------------DIAPT 951
Query: 944 DIH------------YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---F 988
H YD D+EV G D+ DA K +YD +L LL Y + +
Sbjct: 952 LSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLS 1011
Query: 989 RHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASA 1048
I M K +R++ E + + + RKE R F E +D+ + L+ KASA
Sbjct: 1012 GSIMRMSKSFTRRRD--AEAINLAVRSLRKEARTWFNAR----EGADSNSDDLF-AKASA 1064
Query: 1049 WYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
WY VTYH + +G R LSF W D L +IK
Sbjct: 1065 WYYVTYHHSY----WGCYNEGMKRD-HYLSFPWCVYDKLMQIK 1102
>gi|75327281|sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
Length = 1136
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 323/977 (33%), Positives = 476/977 (48%), Gaps = 133/977 (13%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNS-- 266
AILL L +PRI + + D D W+R DF+P+ + G+C++
Sbjct: 177 AILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLV 236
Query: 267 ----KQRVQEDCLSQPVTIREEPDFEVPVED---------PFFCMHYKEGVSFEIMFLVN 313
K + D L + + D P V +E++F +N
Sbjct: 237 LKLGKSALVSDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLN 296
Query: 314 AVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVF--------DAYEKLKD 365
++MH G + ++ F L+ P +V + ++ + + +AY +K
Sbjct: 297 SLMHMGKIVAKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYS-MKR 355
Query: 366 VQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRFLR 414
L+ N EG + + + R+ ITP+K + F ++V A F+R
Sbjct: 356 SHNVLLSNEGEGEGERKL---MKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVR 412
Query: 415 VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFL 474
VTF+DE +++N +S A I + S F KTG++ R+ SIL GF++ + + FL
Sbjct: 413 VTFVDEDWSKLSSNAIS---ARIEQGFFSKPF--KTGLYYRILSILKKGFSIGPKNFEFL 467
Query: 475 AFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIP 533
AFS++QLR +S W F+ + I+ WMG F ++++K AARMG FSS+ T E+
Sbjct: 468 AFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVL 527
Query: 534 PTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYK 589
+V+ +PDI+ + Y+FSDGIGKI+ A VA + LD + PSA+QIRY GYK
Sbjct: 528 RWDVE-VIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYK 586
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
GV+A P I +SLR SMKKF+S L I SW++ QP ++NR+II+LLSTL + DE
Sbjct: 587 GVIAIDPMS--SIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDE 644
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY 709
IF +Q + ML +VA VL + TA ML G++P +EP+L +L
Sbjct: 645 IFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKA 704
Query: 710 ----------------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAE 741
E G L+ Q +I+++++S E S + +
Sbjct: 705 HQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYND 764
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSD 801
K + G V I KNPCL PGD+R+LEA+ P+L + DCLVFPQ+G+RPH NE SG D
Sbjct: 765 DGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGD 824
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAE-------------AKPLTCHVNHQNLGQI 848
LDGDLY++TWD+ LIP +K PM+ T K ++ + +LG I
Sbjct: 825 LDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAI 882
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY 908
AH++HADRS A C+ LA L + AVD KTG MP L+P++YPDFME E
Sbjct: 883 STAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEK 942
Query: 909 QTYKSNKILGRLYRQIKG----AYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADAR 964
Y SN +LG+LYR G + D SS +P YD DLEVPGS +F A
Sbjct: 943 PMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT---YDPDLEVPGSDEFLQAAE 999
Query: 965 NQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFRK 1018
Y+ +L L+ Y ++ R+ K ++++ E+++R+ + A +
Sbjct: 1000 EYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHR 1059
Query: 1019 EFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLS 1078
E R L + K + ASAWY+VTYH + R S
Sbjct: 1060 EARGW---------LLSSRKEEDASRMASAWYRVTYHPD------------RRRGKRFWS 1098
Query: 1079 FAWIANDYLARIKIKCQ 1095
F WIA D L IK Q
Sbjct: 1099 FPWIACDNLLAIKASSQ 1115
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 360/1123 (32%), Positives = 532/1123 (47%), Gaps = 170/1123 (15%)
Query: 76 HAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYV 135
+AFV FAT+ A A L GRAL++ +G T P++ D V
Sbjct: 47 YAFVQFATAEASQLASQLAAENALLFYGRALRIQ---------AHKGVTHGPIR-GDERV 96
Query: 136 EIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCEFKV 195
E G ++T + + SG D L +FCF + L +H + + ++
Sbjct: 97 E-GIVLT-----MGFARGESGIDCLWSCSGVAAEFCFG---SCQLNLLLQHDGVDYKLEL 147
Query: 196 FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIE----VL-VPFDLLD------ 244
L R + V + E + + LL P + ++ E VL P +L
Sbjct: 148 -LFRNLRFVDAFVETSQASHLLLQLFRPPLVFQGLPSPSEQGNPVLDTPLAILRHFKAVR 206
Query: 245 ------------DDDPWIRTTDFSPSGAIGQC--------------------NSKQRVQE 272
+ W R+TDF+P AI Q S
Sbjct: 207 ANSYNYKYSKFAKEPTWTRSTDFTPGKAISQSLVYCLEFPSDLSDEQALKISKSLSGYDT 266
Query: 273 DCLSQPVTIREEPDFEVPVE-DPFFCMHYKEG--VSFEIMFLVNAVMHKGILNQHQLSDS 329
+ + +T+ + + E P + +G + F+I++ +N ++ G ++ ++
Sbjct: 267 SSMDRALTLVAGESYALQQELSPILSITEDDGAPLPFDIVYKINFLVQSGYMSPASVTRE 326
Query: 330 FFDLLRCQPREVIVTALKHIYSYKRPV-FDAYEKLKDVQECLIKNPKLNEGPKNIDDIAE 388
F LL+ P ++ ++AL + S V DA+ ++ +C + +L E P
Sbjct: 327 LFTLLQGFPEKLCLSALDKLVSPAGNVSLDAFSTIESYLKCHHRRSELVE-PDG--GYTY 383
Query: 389 VRRLVITPTKAYWF---LES--------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
V+RLV+TP K Y LE KD A FLRV+F+DE +T+ A+ + P
Sbjct: 384 VKRLVVTPAKVYCTGPELERSNGVTRRYKDFAANFLRVSFVDENFETLYADAVRL---PT 440
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+ + + V+ RV +++ DG + G+++ FL FS++QLR+HS W F+ G +
Sbjct: 441 KVSVQIGLLPEPSSVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWMFAGAGSVTA 500
Query: 498 LDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
I+ WMG+F NIAK AAR+G FSS+ +++E+ E+ Y FSDGIG
Sbjct: 501 ESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYCGTRYCFSDGIG 560
Query: 557 KITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC 616
KI+ A VA+ + PSA QIRYAGYKGVVA P ++SLR SM KF S
Sbjct: 561 KISKAFATSVARACNM--PVVPSALQIRYAGYKGVVAVDPTCS--TKLSLRPSMLKFPSE 616
Query: 617 HTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
T L++ +++ P +LNRQ I L++TL V DE+F +Q L+ ML A EVL
Sbjct: 617 RTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVFERMQNEELKILDEMLRDPQTAIEVL 676
Query: 677 --TASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY------------------------- 709
++S E + ML AG+KP EP L+ +L
Sbjct: 677 RSSSSGGEVHSIMVAMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIYVPKGRCLLG 736
Query: 710 ---ELGELKECQCFIQVS---------ESSLENCFSKHGSRFAETKKLQVINGFVVIAKN 757
E G L Q F+QVS + L++ + G +E+ V+ G VV+ KN
Sbjct: 737 CLDETGVLDYGQVFVQVSPTPGTRRVVDDGLDDARPRRGVTRSESA--CVVLGKVVVTKN 794
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
PCL PGD+ +LEAVD P LHH+ DC+VFPQ+G RPH NE SGSDLDGDLY+VTWD++L+P
Sbjct: 795 PCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKRPHPNECSGSDLDGDLYFVTWDKSLVP 854
Query: 818 PSKKSCPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHVVHADRSEYGAF 864
P PM+ P A L V H +LG I NAH+VHAD+ A
Sbjct: 855 PVTHE--PMDYEPGTAAKLDHSVTLEEIQQFFVDSMVHDSLGVISNAHLVHADKELERAK 912
Query: 865 DENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
D C+ LA+LA+TAVD KTG +P L+P+ YPDFME E TY S +LG+LYR +
Sbjct: 913 DPKCLELARLASTAVDFAKTGIPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYRSL 972
Query: 925 KGAYDENISVSSEVDINP--VDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYN 982
+ SS V +P +D +D L V G A+AR K YD +L LL Y
Sbjct: 973 QSNGRIFSQRSSAVAASPKEMDEEFDRSLIVDGYEQHVAEARLLKELYDTKLERLLRHYE 1032
Query: 983 VNRKEF--RHIWSMPKYNSR-KQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKN 1039
+ E ++ + K N + K+ + ++R+ + + KE + FE ++ +L+
Sbjct: 1033 ITEAEIVTGNVLCLGKANEKTKRNDTRDRIACAMKSLAKEAGRWFEAGLNEHQLA----- 1087
Query: 1040 VLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWI 1082
KA AWY VTYH E+ K S +V LSF W+
Sbjct: 1088 -----KACAWYHVTYHPEFRKGS----------NVESLSFPWV 1115
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 348/1085 (32%), Positives = 526/1085 (48%), Gaps = 134/1085 (12%)
Query: 76 HAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYV 135
+AFV FAT+ A A L GRAL++ ++ T P++ D V
Sbjct: 5 YAFVQFATAEASQLASQLAAENALLFYGRALRIQ---------ARKAVTHGPIR-GDERV 54
Query: 136 EIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCEFKV 195
E G ++T + + SG D L +FCF + L +H + + ++
Sbjct: 55 E-GIVLT-----MGFARGESGIDCLWSCSGVAAEFCFG---SCQLNLLLQHDGVDYKLEL 105
Query: 196 FLVREIDIVKQYSELPRVAILLW--LASSPRICYR--TAKDDIEVLVPFDLLDDDDPWIR 251
L R + V + E + + LL + +P R A + + W R
Sbjct: 106 -LFRNLRFVDAFVETSQASHLLLQVMLDTPLAILRHFKAVRSNSYNYKYSKFAKEPTWTR 164
Query: 252 TTDFSPSGAIGQC--------------------NSKQRVQEDCLSQPVTIREEPDFEVPV 291
+TDF+P AI Q S + + +T+ + +
Sbjct: 165 STDFTPGKAISQSLVYCLEFPSDLSDEQALKISKSLSGYDTSSMDRALTLVAGESYALQQ 224
Query: 292 E-DPFFCMHYKEG--VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKH 348
E P + +G + F+I++ +N ++ G ++ ++ F LL+ P ++ ++AL
Sbjct: 225 ELSPILSITEDDGAPLPFDIVYKINFLVQSGYMSPASVTRELFTLLQGFPEKLCLSALDK 284
Query: 349 IYSYKRPV-FDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF---LE 404
+ S V DA+ ++ +C + +L E P V+RLV+TPTK Y LE
Sbjct: 285 LVSPAGNVSLDAFSTIESYLKCHHRRSELVE-PDG--GYTYVKRLVVTPTKVYCTGPELE 341
Query: 405 S--------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRV 456
KD A FLRV+F+DE +T+ A+ + P + + + V+ RV
Sbjct: 342 RSNGVTRRYKDFAANFLRVSFVDENFETLYADAVRL---PTKVSVQIGLLPEPSSVYHRV 398
Query: 457 KSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKY 515
+++ DG + G+++ FL FS++QLR+HS W F+ G + I+ WMG+F NIAK
Sbjct: 399 LAVVRDGVTIGGKKFKFLGFSASQLREHSLWMFADAGSVTAESIRAWMGDFGGFTNIAKC 458
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS 575
AAR+G FSS+ +++E+ E+ Y FSDG+GKI+ A VA+ +
Sbjct: 459 AARIGQSFSSSRSSLEVLEDELSSVEDIYCGTRYCFSDGVGKISKAFATSVARACNM--P 516
Query: 576 PPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNR 635
SA QIRYAGYKGVVA P ++SLR SM KF S T L++ +++ P +LNR
Sbjct: 517 VVLSALQIRYAGYKGVVAVDPTCS--TKLSLRPSMLKFPSERTGLDVLKASQYAPYYLNR 574
Query: 636 QIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL--TASCAEQGNTAAIMLSA 693
Q I L++TL V DE+F +Q L+ ML A EVL ++S E + ML A
Sbjct: 575 QSIILMTTLGVPDEVFERMQKEELKILDEMLSDPQTAIEVLRSSSSGGEAHSIMVAMLQA 634
Query: 694 GFKPQTEPHLQGMLTYELGELKECQCFIQVSESSL-------------ENCFSKHGSRFA 740
G+KP EP L+ +L + Q ++ ++S + E +G F
Sbjct: 635 GYKPAHEPFLRRLLD----NFRSLQLYLLRTKSRIYVPKGRCLLGCLDETGVLDYGQVFV 690
Query: 741 E-----TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTN 795
+ ++ V+ G VV+ KNPCL PGD+ +LEAVD P LHH+ DC+VFPQ+G RPH N
Sbjct: 691 QVGVTRSESACVVLGKVVVTKNPCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKRPHPN 750
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-------------H 842
E SGSDLDGDLY+VTWD++L+PP PM+ P A L V H
Sbjct: 751 ECSGSDLDGDLYFVTWDKSLVPPVTHE--PMDYEPGTAAKLDHSVTLEEIQRFFVDSMVH 808
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
+LG I NAH+VHAD+ A D C+ LA+LA+TAVD KTG +P L+P+ YPDF
Sbjct: 809 DSLGVISNAHLVHADKELERAKDPKCLELARLASTAVDFAKTGIPAVIPVDLRPRDYPDF 868
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP--VDIHYDTDLEVPGSVDFT 960
ME E TY S +LG+LYR ++ SS V +P +D +D L V G
Sbjct: 869 MENEFKSTYTSQSVLGKLYRSLQSNGRIFSQRSSAVAASPKEMDQEFDRSLTVDGYEQHV 928
Query: 961 ADARNQKCSYDGQLNGLLGQYNVNRKEF--RHIWSMPKYNSR-KQGELQERLKHSYSAFR 1017
++AR+ K YD +L LL Y + E ++ + K N + K+ + ++R+ + +
Sbjct: 929 SEARSLKELYDTKLERLLRHYEITEAEIVTGNVLCLGKANEKTKRNDTRDRIACAMKSLA 988
Query: 1018 KEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLL 1077
KE + FE ++ +L+ KA AWY VTYH E+ K S +V L
Sbjct: 989 KEAGRWFEAGLNEHQLA----------KACAWYHVTYHPEFRKGS----------NVESL 1028
Query: 1078 SFAWI 1082
SF W+
Sbjct: 1029 SFPWV 1033
>gi|125548642|gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 320/976 (32%), Positives = 474/976 (48%), Gaps = 131/976 (13%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNS-- 266
AILL L +PRI + + D D W+R DF+P+ + G+C++
Sbjct: 177 AILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLV 236
Query: 267 ----KQRVQEDCLSQPVTIREEPDFEVPVED---------PFFCMHYKEGVSFEIMFLVN 313
K + D L + + D P V +E++F +N
Sbjct: 237 LKLGKSALVSDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLN 296
Query: 314 AVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYE-------KLKDV 366
++MH G + ++ F L+ P +V + ++ + ++ + +K
Sbjct: 297 SLMHMGKIVAKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYEPLQFIQQEAYSMKRS 356
Query: 367 QECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRFLRV 415
L+ N EG + + + R+ ITP+K + ++V A F+RV
Sbjct: 357 HNVLLSNEGEGEGERKL---MKCYRVNITPSKIFCLGPEEEVTNYVVKHHSAYASDFVRV 413
Query: 416 TFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLA 475
TF+DE +++N +S A I + S F KTG++ R+ SIL GF++ + + FLA
Sbjct: 414 TFVDEDWSKLSSNAIS---ARIEQGFFSKPF--KTGLYYRILSILKKGFSIGPKNFEFLA 468
Query: 476 FSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPP 534
FS++QLR +S W F+ + I+ WMG F ++++K AARMG FSS+ T E+
Sbjct: 469 FSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLR 528
Query: 535 TEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKG 590
+V+ +PDI+ + Y+FSDGIGKI+ A VA + LD + PSA+QIRY GYKG
Sbjct: 529 WDVE-VIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKG 587
Query: 591 VVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEI 650
V+A P I +SLR SMKKF+S L I SW++ QP ++NR+II+LLSTL + DEI
Sbjct: 588 VIAIDPMS--SIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEI 645
Query: 651 FWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY- 709
F +Q + ML +VA VL + TA ML G++P +EP+L +L
Sbjct: 646 FVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAH 705
Query: 710 ---------------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAET 742
E G L+ Q +I+++++S E S + +
Sbjct: 706 QENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDD 765
Query: 743 KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDL 802
K + G V I KNPCL PGD+R+LEA+ P+L + DCLVFPQ+G+RPH NE SG DL
Sbjct: 766 GKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDL 825
Query: 803 DGDLYYVTWDENLIPPSKKSCPPMECTPAE-------------AKPLTCHVNHQNLGQIC 849
DGDLY++TWD+ LIP +K PM+ T K ++ + +LG I
Sbjct: 826 DGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAIS 883
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ 909
AH++HADRS A C+ LA L + AVD KTG MP L+P++YPDFME E
Sbjct: 884 TAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKP 943
Query: 910 TYKSNKILGRLYRQIKG----AYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARN 965
Y SN +LG+LYR G + D SS +P YD DLEVPGS +F A
Sbjct: 944 MYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT---YDPDLEVPGSDEFLQAAEE 1000
Query: 966 QKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFRKE 1019
Y+ +L L+ Y ++ R+ K ++++ E+++R+ + A +E
Sbjct: 1001 YYELYEEKLTTLMNYYRAEHEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHRE 1060
Query: 1020 FRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSF 1079
R L + K + ASAWY+VTYH + R SF
Sbjct: 1061 ARGW---------LLSSRKEEDASRMASAWYRVTYHPD------------RRRGKRFWSF 1099
Query: 1080 AWIANDYLARIKIKCQ 1095
WIA D L IK Q
Sbjct: 1100 PWIACDNLLAIKASSQ 1115
>gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 290/778 (37%), Positives = 429/778 (55%), Gaps = 93/778 (11%)
Query: 342 IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKA 399
I AL+ +Y+ K +D L + +K +L + P +DD + VRR+++TP K
Sbjct: 2 IEHALEKLYNLKECCYDPVRWLTKQYDEYLKRRQLPKSPSITLDDGLMYVRRVLVTPCKV 61
Query: 400 YWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y+ +V++R FLRV+F+DE + + S + P +N
Sbjct: 62 YFLGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWE----KIFSMDLLP-----RANRNGI 112
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
+T +++R+ S L +G + +++ FLAFSS+QLRD+S W F+ + DI+ WMG+F
Sbjct: 113 RTDIYERILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQ 172
Query: 509 A-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAME 565
+N+AKYAAR+G F S+ T+ + E+ + +PD++ +G YVFSDGIGKI+ D A
Sbjct: 173 QIRNVAKYAARLGQSFGSSRETLSVGRHEIKY-IPDVEVHGTNYVFSDGIGKISADFAHR 231
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW 625
VA+ L +P SA+QIRY GYKGVVA P +++SLR SM K++S +T L++ W
Sbjct: 232 VAKKCGLQHTP--SAFQIRYGGYKGVVAVDPYSP--MKLSLRKSMLKYESNNTKLDVLGW 287
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQG 684
+++QP +LNRQ++TL+STL V DE+F Q ++L+ +L S A E L S E
Sbjct: 288 SKYQPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENT 347
Query: 685 NTAAIMLSAGFKPQTEPHLQGML-TYELGELKECQCFIQV---SESSLENC--------- 731
N ML+ G+ P EP L ML T+ +L + + ++ S+ C
Sbjct: 348 NILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEY 407
Query: 732 ------FSKHGSR--FAETKKLQ---------VINGFVVIAKNPCLRPGDVRILEAVDRP 774
F+ G R + E+ ++ G VV+AKNPCL PGD+R+L+AVD P
Sbjct: 408 GQVFVQFTGAGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVP 467
Query: 775 ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAK 834
LHH+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD +LIPP + PM+ TPA +
Sbjct: 468 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPP--RQVQPMDYTPAPSI 525
Query: 835 PL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDS 881
L T ++ + LG I NAHVV ADR A + CI LA+L + AVD
Sbjct: 526 QLDHDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDF 585
Query: 882 PKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDIN 941
PKTG +PS L+PK+YPDFME + TY S K++G+L+R++K + S+++ +
Sbjct: 586 PKTGVPAEIPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITT-FTRD 644
Query: 942 PVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPK----Y 997
YDTDLEV G D+ +A + K YD +L L+ Y + + + K +
Sbjct: 645 VARRSYDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTF 704
Query: 998 NSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYH 1055
+ R+ E + + + RKE R F K SD + ++L KASAWY V YH
Sbjct: 705 DRRRDAEA---IGVAVRSLRKEARTWF-KRRSDID------DLL--AKASAWYHVAYH 750
>gi|251765121|sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1
Length = 740
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 290/722 (40%), Positives = 401/722 (55%), Gaps = 64/722 (8%)
Query: 405 SKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGF 464
S D+ + FLR++F+DE + + A LS A S + +T ++KRV S+LSDG
Sbjct: 27 SSDI-ENFLRISFVDEDCEKLRATDLSPRSA-------SGHDANRTALYKRVLSVLSDGI 78
Query: 465 NLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCF 523
+ G+ + FLAFSS+QLRD+SAW F+ + DI+ WMG+F +N+AKYAAR+G F
Sbjct: 79 TIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSF 138
Query: 524 SSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAY 581
SS+ T+++ EV+ E+ DIK NG +VFSDGIGKI+ A EVA L P SA+
Sbjct: 139 SSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAP-SAF 195
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
QIRY GYKGVVA P ++SLR SM KF+S + ++++ +++++QPGFLNRQ+ITLL
Sbjct: 196 QIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLL 253
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTE 700
STL V D +F Q ++LN M+ A E + E N +L G++P E
Sbjct: 254 STLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDE 313
Query: 701 PHLQGML----TYELGELKECQCFIQVSESSLENCFS-----KHGSRFAETKK------L 745
P+L +L +L ELK + ++ C K+G F
Sbjct: 314 PYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDR 373
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
+ G VVIAKNPCL PGD+RIL AVD P LHH+ +C+VFPQ+G RPH NE SGSDLDGD
Sbjct: 374 FTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGD 433
Query: 806 LYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAH 852
+Y+V+WD +LIPP + PM+ TPA + L T ++ +++LG I NAH
Sbjct: 434 IYFVSWDPSLIPP--RMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAH 491
Query: 853 VVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYK 912
VV AD+ + A CI LAKL + AVD PKTG +P L K+YPDFME + TY+
Sbjct: 492 VVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYE 551
Query: 913 SNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDG 972
S ++G+LYR+IK + EV YDTD+ V G D+ +A K YD
Sbjct: 552 SKGVIGKLYREIKKHTPHIKHFTREV----ARRSYDTDMIVDGYEDYITEAMALKDEYDF 607
Query: 973 QLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNS 1029
+L L+ Y + + I M K ++K RL + + RKE R F +M+
Sbjct: 608 KLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRL--AVRSLRKEARSRFSEMSL 665
Query: 1030 DFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLAR 1089
D + + E KASAWY VTYH E+ +G R +SF W + L R
Sbjct: 666 D---DNGHGHDASEAKASAWYHVTYHPEF----WGCYNEGYERP-HFISFPWCIYEKLLR 717
Query: 1090 IK 1091
IK
Sbjct: 718 IK 719
>gi|115437172|ref|NP_001043229.1| Os01g0527600 [Oryza sativa Japonica Group]
gi|113532760|dbj|BAF05143.1| Os01g0527600, partial [Oryza sativa Japonica Group]
Length = 385
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/388 (60%), Positives = 275/388 (70%), Gaps = 21/388 (5%)
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
I G VVIAKNPCL PGDVRILEAVD PELHHL DCLVFPQKG+RPH NEASGSDLDGDLY
Sbjct: 1 ILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLY 60
Query: 808 YVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNH-------------QNLGQICNAHVV 854
+VTWDE LIPP KKS PM+ +P EAK L V+ +NLG+ICNAHVV
Sbjct: 61 FVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVV 120
Query: 855 HADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSN 914
HAD SEYGA DE CI LA+LAATAVD PKTGK+ MP HLKPK YPDFM E+ Q+YKS
Sbjct: 121 HADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSE 180
Query: 915 KILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQL 974
KILGRLYR I+ A + ++ VS EV P D+ YD DLEVPG+ DF A A KCSYD QL
Sbjct: 181 KILGRLYRSIQEASNGDV-VSQEV-CTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQL 238
Query: 975 NGLLGQYNVNRKEFR----HIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD 1030
+ LL QY V R E HI + K +S+KQG++++RLK +YSA RKEF+ FE + SD
Sbjct: 239 SALLSQYRV-RTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASD 297
Query: 1031 -FELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLAR 1089
E+ D+EKN+LYE KASAWYQVTYH +WV+KS +L LSFAWI DYLAR
Sbjct: 298 QCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLAR 357
Query: 1090 IKIKCQEMANIGKSKPVNNLARYVADRI 1117
IK++C + KPV LA Y+++RI
Sbjct: 358 IKLRCHGKVRVEGQKPVERLAAYISERI 385
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 350/1037 (33%), Positives = 516/1037 (49%), Gaps = 161/1037 (15%)
Query: 161 VDPFDG-TCKF-CFTKDTAFALKSSAEHAVIKCEFKVFLVREIDIVKQYSELPRVAILLW 218
VD DG T F C D FA+ S E V L R Q+ +L+
Sbjct: 162 VDHMDGITLNFGCQISDDKFAVLGSTE---------VVLHRPYGQNAQF-------LLIQ 205
Query: 219 LASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS-----KQRVQED 273
L +PRI R F DD W+RTTDF+PS IG +S ++ V
Sbjct: 206 LFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLP 260
Query: 274 CLSQPVTIREEPDFEVPVEDPF-FCMHYK----------EGVS--FEIMFLVNAVMHKGI 320
+ E + + ++ F F + K EG++ ++I+F +++++ G
Sbjct: 261 NFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGC 320
Query: 321 LNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNE 378
+ L+ FF L+ Q R V I AL+ +Y K +D L + + K + +
Sbjct: 321 IPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPK 380
Query: 379 GPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTM 425
P +DD + VRR+++TP K Y+ +V++R FLRV+F+DE + +
Sbjct: 381 SPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKL 440
Query: 426 NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHS 485
+ L + K T N +T +++R+ S L GF + +++ FLAFSS+QLRD+S
Sbjct: 441 YSTEL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 492
Query: 486 AWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI 544
W F+ + DI++WMG+F+ KN+AKYAAR G F S+ T+ + E++ +PD+
Sbjct: 493 VWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIE-VIPDV 551
Query: 545 KRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
K +G YVFSDGIGKI+ D A +VA L +P SA+QIRY GYKGVVA P +
Sbjct: 552 KVHGTSYVFSDGIGKISADFARKVASNCGLQYTP--SAFQIRYGGYKGVVAVDPYS--SM 607
Query: 603 RMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL 662
++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL V D++ Q +L
Sbjct: 608 KLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQL 667
Query: 663 NLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGELKEC--- 717
+ +L S A E L S E N ML+ G+ P EP L ML T+ +L +
Sbjct: 668 DAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTK 727
Query: 718 ------------------------QCFIQVSESSLENCFSKHGSRFAETKKLQ---VING 750
Q F+Q + + FS+ F ++ ++ G
Sbjct: 728 SRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHRE-FSEDLHPFNNSRSTNCNFILKG 786
Query: 751 FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVT 810
VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG RPH NE SGSDLDGD+Y+V
Sbjct: 787 NVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVC 846
Query: 811 WDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHAD 857
WD+++IPP + ME P + L T ++ + LG I NAHVV AD
Sbjct: 847 WDQDMIPP--RQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFAD 904
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEI-EEYQTYKSNKI 916
R A +D PKTG +PS L+PK+YPDFM+ + TY S ++
Sbjct: 905 REPDMAM--------------MDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERV 950
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIH--YDTDLEVPGSVDFTADARNQKCSYDGQL 974
+G+L+R++K D+ SS D YDTDLEV G D+ +A + K YD +L
Sbjct: 951 IGKLFRKVK---DKAPQASSIAIFTRDDARRSYDTDLEVDGFEDYIDEAFDYKTEYDNKL 1007
Query: 975 NGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFEL 1033
L+ Y + + E M + + + E + + A RKE R F++ N ++
Sbjct: 1008 GNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDIDDM 1067
Query: 1034 SDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
KASAWY VTYH + QG R +SF W D L +IK
Sbjct: 1068 L---------PKASAWYHVTYHPTY----WGCYNQGLKRD-HFISFPWCVYDQLIQIK-- 1111
Query: 1094 CQEMANIGKSKPVNNLA 1110
+E A +++PV NL+
Sbjct: 1112 -KEKA---RNRPVLNLS 1124
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 332/994 (33%), Positives = 491/994 (49%), Gaps = 163/994 (16%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDD----------DPWIRTTDFSPSGAIGQC 264
+L+ L +PRI R A+ F L+ +D W R TDF+PS +IGQ
Sbjct: 169 LLIQLFGAPRIYERDARS-------FGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQS 221
Query: 265 NSKQRVQEDCLSQPVTIREEPDFE---------------------------VPVEDPFFC 297
+ CL + + R+ P+F VPV P
Sbjct: 222 AAL------CL-EILYGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRT 274
Query: 298 MHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ--PREVIVTALKHIYSYKRP 355
++ + + I+F +N ++ +G L L SF+ ++ Q VI ALK + K
Sbjct: 275 IN----LPYTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHALKKLLHLKEC 330
Query: 356 VFDAYEKLKD--VQECLIKNP------KLNEGPKNIDDIAEVRRLVITPTKAYW------ 401
++ + L + + +KNP LNEG + V R+ +TP K Y+
Sbjct: 331 CYNPSKWLDEEYRKYFKLKNPPQPPILTLNEG------LVYVHRVQVTPCKVYFCGPEVN 384
Query: 402 -----FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRV 456
D D FLRV+F+DE L M + LS + ++D KT + KR+
Sbjct: 385 ISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLED-------GKTKILKRI 437
Query: 457 KSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKY 515
S+L DG + +++ FLA+SS+QLR+++AW F+ E + I+ WMG+F +N+AKY
Sbjct: 438 LSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKY 497
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKRNG-----YVFSDGIGKITPDLAMEVAQIL 570
AAR+G F S+ T+ + EV +PDI+ YVFSDGIGKI A +VA+
Sbjct: 498 AARLGQPFGSSTETLSVSRREVK-VIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKC 556
Query: 571 KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQP 630
+ +P SA+QIRYAG+KGV++ P +++SLR SM K++S T L++ SW+++ P
Sbjct: 557 GIRHTP--SAFQIRYAGFKGVISVDPT--SSVKLSLRNSMLKYESTDTKLDVLSWSKYHP 612
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML---VASDVAFEVLTASCAEQGNTA 687
FLNRQ+ITLLSTL V D +F + Q + +L+ + + + A E++ S E
Sbjct: 613 CFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELM--SPGENTKIL 670
Query: 688 AIMLSAGFKPQTEPHLQGML-TYELGELKECQCFIQV---SESSLENCFS-----KHGSR 738
M+ G+KP +EP L+ ML T+ +L E + ++ + ++ C ++G
Sbjct: 671 KEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEV 730
Query: 739 FAETKKLQ------------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
F + Q ++ G VV+AKNPCL PGDVR+L AVD P LHH+
Sbjct: 731 FWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMI 790
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHV 840
DC+VFPQKG RPH NE SGSDLDGD+Y+V WD +LIPP + PM+ TP ++ L V
Sbjct: 791 DCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPP--QQVEPMDYTPVPSQVLDHDV 848
Query: 841 NHQ-------------NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
+ +LG I NAH AD+ A CI LAKL + AVD PKTG
Sbjct: 849 TMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAVDFPKTGVP 908
Query: 888 VTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP--VDI 945
+P++L+ K+YPDFM+ + TY+S +LG+L+R + + NI + P
Sbjct: 909 ALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLD-SIGPNIKNIRSFNYTPEMARQ 967
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGE 1004
YD D+EV G ++ DA K +YD +L L+ + + + E S+ S
Sbjct: 968 DYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKN 1027
Query: 1005 LQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLD 1064
E + + + RKE R F N +L +Y +ASAWY VTYH + S
Sbjct: 1028 EAESIILAVKSLRKEARGWF---NEKADLHYGHHTNVY-ARASAWYFVTYHHTYWGWS-- 1081
Query: 1065 LLEQGSARSVVLLSFAWIANDYLARI---KIKCQ 1095
G LSF W D L RI KI C+
Sbjct: 1082 ---DGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1112
>gi|326493668|dbj|BAJ85295.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1127
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 331/987 (33%), Positives = 479/987 (48%), Gaps = 162/987 (16%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNSKQ 268
ILL L +PRIC + + D D W+R DF+P+ + G+C++
Sbjct: 179 GILLQLMYAPRICTTISGPAVYSRFSDDRFHACKEDAKFTWVRALDFTPNHSFGKCSTLA 238
Query: 269 RVQEDCLSQPVTIREEP-------------DF------EVPVED-PFFCMHYKEGVSFEI 308
V ++ + P DF VP+ D P C VS+E+
Sbjct: 239 LVLDEGAPVSFILNSLPLSGELGELVISSMDFFGSSSKVVPLVDCPSGC-----SVSYEV 293
Query: 309 MFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPV-FDAYEKLKDVQ 367
+F +N+++H G L ++ F L E+ V + I+ + F YE L+ +Q
Sbjct: 294 LFRLNSLVHMGKLVAKHVNADLFKALE----EIPVHISRRIFEKMSKLEFTCYEPLQFIQ 349
Query: 368 E----------CLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV--------- 408
+ L+ + EG + R+ ITP+K Y ++V
Sbjct: 350 QEAHSRKRSHDALLSSKTEGEG-----KLMMCYRIHITPSKIYCLGPEEEVSNYVVKHHK 404
Query: 409 --ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ--KTGVFKRVKSILSDGF 464
A F RVTF+DE + + +S FSQ KTG++ R+ SIL +GF
Sbjct: 405 QYASDFTRVTFVDEDWSKLFPDAISARTG-------RGFFSQPLKTGLYYRILSILKEGF 457
Query: 465 NLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCF 523
++ ++Y FLAFS++QLR S W F+ DI+ WMG F ++++K AARMG F
Sbjct: 458 SIGPKKYEFLAFSASQLRGSSVWMFASNDSLKAEDIRRWMGNFEEIRSVSKCAARMGQLF 517
Query: 524 SSTHATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPS 579
SS+ T++I P +V+ E+PDI+ Y+FSDGIGKI+ A E+A + LD + PPS
Sbjct: 518 SSSRQTLDILPRDVE-EIPDIEVTTDGTKYIFSDGIGKISERFAKEMACRIGLDYTNPPS 576
Query: 580 AYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIIT 639
A+QIRY GYKGVVA P D +SLR SMKKF+S I S ++ QP ++NR+II+
Sbjct: 577 AFQIRYGGYKGVVAVDP--DSFRNLSLRPSMKKFESKSRMFNITSTSKSQPCYMNREIIS 634
Query: 640 LLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQT 699
LLSTL + DEIF +Q +L+ ML + A VL + + TA+ +L G++P
Sbjct: 635 LLSTLGIRDEIFELMQQHDMRELDEMLTNREAALSVLGKIGSAETKTASKILLQGYEPSL 694
Query: 700 EPHLQGMLTY----------------------------ELGELKECQCFIQVSESSLE-- 729
EP+L +L E GEL+ Q +I+++++S E
Sbjct: 695 EPYLLMILKAHQDNRLTDIRTRCKIHVPKGRVLIGCLDETGELEYGQVYIRITKNSKEQK 754
Query: 730 -NC---FSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH--HLCDCL 783
NC FS+ + K V+ G V ++KNPCL PGD+R+LEAV L+ +L DC+
Sbjct: 755 DNCQPYFSEDNGK----DKTAVVVGKVAVSKNPCLHPGDIRVLEAVYDHGLYSKNLVDCV 810
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-- 841
VFPQ+G+RPH NE SG DLDGDLY++TWDE LIP +K PM+ T A + + V
Sbjct: 811 VFPQRGERPHPNECSGGDLDGDLYFITWDEKLIP--EKVDSPMDYTAARPRIMDHVVTLE 868
Query: 842 -----------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
+ +LG I AH+VHADR A C+ LA L + AVD K+G M
Sbjct: 869 EIQKYFVDYMINDSLGAISTAHLVHADRHPMKARSPECLQLAALHSMAVDFAKSGAPAEM 928
Query: 891 PSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTD 950
P L+PK+YPDFME + TY SN LG+LYR + SS P +D D
Sbjct: 929 PRSLRPKEYPDFMERWDKPTYISNGPLGKLYRAAASRMQSAPAPSSSAQPIPA---FDPD 985
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGE 1004
LEVPG +F A Y +L+ L+ Y ++ R+ K ++++ E
Sbjct: 986 LEVPGFEEFLVSAEECYDLYAEKLSTLMSYYGTEHEDEILTGNIRNRLLYLKKDNKRYFE 1045
Query: 1005 LQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLD 1064
+++R+ S KE R F + ++ASAWY + YH D
Sbjct: 1046 MKDRIIDSVEGLHKEVRGWFT----------SRPKAEAARRASAWYHMAYHP-------D 1088
Query: 1065 LLEQGSARSVVLLSFAWIANDYLARIK 1091
+ G R SF WI D L IK
Sbjct: 1089 HHQPGKRR---FWSFPWIICDELLTIK 1112
>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 441 bits (1135), Expect = e-120, Method: Compositional matrix adjust.
Identities = 335/1009 (33%), Positives = 499/1009 (49%), Gaps = 185/1009 (18%)
Query: 246 DDPWIRTTDFSPSGAIGQCNS-----KQRVQEDCLSQPVTIREEPDFEVPVEDPF-FCMH 299
DD W+RTTDF+PS IG +S ++ V + E + + ++ F F +
Sbjct: 41 DDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFIS 99
Query: 300 YK----------EGVS--FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTA 345
K EG++ ++I+F +++++ G + L+ FF L+ Q R V I A
Sbjct: 100 QKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQA 159
Query: 346 LKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFL 403
L+ +Y K +D L + + +K + + P +DD + VRR+++TP K Y+
Sbjct: 160 LEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCG 219
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+V++R FLRV+F+DE + + + L + K T N +T +
Sbjct: 220 PEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNI 271
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KN 511
++R+ S L GF + +++ FLAFSS+QLRD+S W F+ + DI+ WMG+F+ KN
Sbjct: 272 YERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKN 331
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQI 569
+AKYAAR+G F S+ T+ + E++ +PD+K +G YVFSDGIGKI+ D A VA
Sbjct: 332 VAKYAARLGQSFGSSKETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASK 390
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ 629
L +P SA+QIRY GYKGVVA P ++++LR SM K++S + L++ W+++Q
Sbjct: 391 CGLQYTP--SAFQIRYGGYKGVVAVDPYS--SMKLTLRKSMSKYESDNNKLDVLGWSKYQ 446
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAA 688
P FLNRQ+ITLLSTL V D+I Q +L+ +L S A E L S E N
Sbjct: 447 PCFLNRQLITLLSTLGVRDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 506
Query: 689 IMLSAGFKPQTEPHLQGML-TYELGELKEC---------------------------QCF 720
ML+ G+ P EP L ML T+ +L + Q F
Sbjct: 507 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVF 566
Query: 721 IQVSESSLENCFSKHGSRFAETKKLQ---VINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
+Q + + FS+ F ++ ++ G VV+AKNPCL PGD+R+L AVD P LH
Sbjct: 567 VQFTGAGHRE-FSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 625
Query: 778 HLCDCLVFPQKGDR---------------------------------PHTNEASGSDLDG 804
H+ DC+VFPQKG R PH NE SGSDLDG
Sbjct: 626 HMVDCVVFPQKGKRLGMYFNCFPTSEVEVKSAYTLPSSDPTLWYLTGPHPNECSGSDLDG 685
Query: 805 DLYYVTWDENLIPPSKKSCPPMECTPAEAKPL---------------------------- 836
D+Y+V WD+++IPP + PME PA + L
Sbjct: 686 DIYFVCWDQDMIPP--RQVQPMEYPPAPSIQLDHDVTIERGDWPVCATTVQVLRNSFSPV 743
Query: 837 ----------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
T ++ + +LG I NAHVV ADR A + C LA+L + AVD PKTG
Sbjct: 744 CLLQEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGV 803
Query: 887 IVTMPSHLKPKKYPDFME-IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
+PS L+PK+YPDFM+ + TY S +++G+L+R++K + +S I D+
Sbjct: 804 PAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVK----DKAPQASSTAIFTRDV 859
Query: 946 ---HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRK 1001
YD DLEV G D+ +A + K YD +L L+ Y + + E M +
Sbjct: 860 ARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFD 919
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
+ + E + + A RKE R F++ N ++ KASAWY VTYH +
Sbjct: 920 RRKDAEAISIAVRALRKEARTWFKRRNDIDDML---------PKASAWYHVTYHPTY--- 967
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLA 1110
QG R +SF W D L +IK +E A +++PV NL+
Sbjct: 968 -WGCYNQGLKRD-HFISFPWCVYDQLIQIK---KEKA---RNRPVLNLS 1008
>gi|357117510|ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1138
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 321/978 (32%), Positives = 489/978 (50%), Gaps = 147/978 (15%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPF--DLL-----DDDDPWIRTTDFSPSGAIGQCNS 266
AILL L +PRI TA V F D L D W+R DF+P+ + G+C++
Sbjct: 176 AILLQLTYAPRI--HTAFSGPAVYSRFTDDRLHACKEDAKFTWVRALDFTPNQSFGKCST 233
Query: 267 KQ-RVQEDC-------------------LSQPVTIREEPDFEVPVEDPFFCMHYKEGVSF 306
++ ED +S + V+ P C VS+
Sbjct: 234 LVIKLDEDAPMLHILNGLPFSGVLGEMAISSMDVVGPSSKVVPLVDCPHGC-----SVSY 288
Query: 307 EIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYE----K 362
E++F +N+++H G + ++ + F L P + + + + ++ + +
Sbjct: 289 EVLFRLNSLVHTGKIVAKHVNANLFTFLEQVPLHISRKIFEKMSKLESTCYEPLQFIESE 348
Query: 363 LKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADR 411
LK Q L+ + + EG + R+ ITP+K Y ++ A
Sbjct: 349 LKLTQNALLSSKREGEG-----KLMRCYRIHITPSKIYCLGPQEEASNYVVKHHSEYASD 403
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
F+RVTF+DE ++ N +S A I + S F KTG++ R+ SIL +GF + +++
Sbjct: 404 FVRVTFVDEDWSKLSVNAIS---ARIEQGFFSQPF--KTGLYYRILSILKEGFIIGPKKF 458
Query: 472 SFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAK-NIAKYAARMGLCFSSTHATV 530
FLAFS++QLR+ S W F+ + I+ WMG F +++K AARMG FSS+ TV
Sbjct: 459 KFLAFSASQLREGSVWMFASNDSLNAEGIRRWMGHFEEICSVSKCAARMGQLFSSSRQTV 518
Query: 531 EIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA 586
E+ P +V+ E+PDI+ Y+FSDGIGK++ A E+A + LD PPSA++IR+
Sbjct: 519 EVRPKDVE-EIPDIEVITNNMKYIFSDGIGKMSVRFAKEIAYRIGLDHKNPPSAFEIRFG 577
Query: 587 GYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNV 646
GYKGV+A P+ +SLR SM+KF+S L I SW++ QP +NR+II+LLSTL +
Sbjct: 578 GYKGVIAVDPSSYRN--LSLRPSMRKFESDCRMLNITSWSKSQPCHVNREIISLLSTLGI 635
Query: 647 SDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM 706
DE+F +Q +L+ ML ++A VL + + TAA ML G+KP +EP+L +
Sbjct: 636 RDEVFELMQQDDMCELDEMLTNKEIALSVLGKIGSAETKTAADMLLQGYKPISEPYLLMI 695
Query: 707 LTY----------------------------ELGELKECQCFIQVSESSLENCFSKHGSR 738
L E G LK Q +I++++++ E ++
Sbjct: 696 LKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGILKYGQVYIRITKNNKEQKENEQPYF 755
Query: 739 FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH--HLCDCLVFPQKGDRPHTNE 796
+ K + G V ++KNPCL PGDVR+LEAV ELH L DC+VFPQ+G+RPH NE
Sbjct: 756 CKDDGKTVTLVGKVAVSKNPCLHPGDVRVLEAVCDLELHATKLVDCVVFPQRGERPHPNE 815
Query: 797 ASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ------------- 843
SG DLDGDLY+VTWD+ LIP +K+ PM+ T A + + V +
Sbjct: 816 CSGGDLDGDLYFVTWDDRLIP--EKADTPMDYTAARPRIMDHVVTLEEIQQHVVNYMLSD 873
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFM 903
+LG I NAH++HADR A C+ LA L + AVD KTG +P L+P+++PDFM
Sbjct: 874 SLGAISNAHLIHADRDPMKARSPECLRLAALHSMAVDFAKTGAPAELPRSLRPREFPDFM 933
Query: 904 EIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADA 963
E + Y S +LG+LYR + + +++S+V +P YD +LEVPG +F DA
Sbjct: 934 ERWDKPMYISTGVLGKLYRAAVSRMESSHALASQVQSSPT---YDRELEVPGFEEFLEDA 990
Query: 964 RNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFR 1017
Y +L L+ ++ R+ + + ++ ++++R+ S +A
Sbjct: 991 DKHYDLYVEKLTTLMNYDGAEHEDEMLTGNIRNRLLYLRKDRKRYSDMKDRIVDSVNALH 1050
Query: 1018 KEFRQVFEK-MNSDFELSDNEKNVLYEQKASAWYQVTY---HREWVKKSLDLLEQGSARS 1073
+E R F + ++ E S + ASAWY+VTY HR KK
Sbjct: 1051 EEVRGWFHSCLKAEEEAS---------RVASAWYRVTYHPDHRRPEKKQ----------- 1090
Query: 1074 VVLLSFAWIANDYLARIK 1091
SF WI D L IK
Sbjct: 1091 --FWSFPWIICDKLLAIK 1106
>gi|302814495|ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
gi|300143268|gb|EFJ09960.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
Length = 755
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 290/764 (37%), Positives = 406/764 (53%), Gaps = 115/764 (15%)
Query: 389 VRRLVITPTKAYW----FLESKDVA-------DRFLRVTFMDEGLQTMNANVLSYYVAPI 437
V+R+++TP K Y+ ES V D FLRVTF+DE ++++ VLS
Sbjct: 24 VKRVLVTPLKVYFIGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLSSYVLSSSRG-- 81
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
T V+ R+ +IL G LCG+ + FLAFS++QLR++S W F+ E +
Sbjct: 82 ---------RTNTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDEVTG 132
Query: 498 LDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKR-----NGYVF 551
I+ WMG+F + +N+AK AARMG FS++ T+++P EV +L D++ + Y F
Sbjct: 133 EYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEV-RQLSDVETFTPEGHKYCF 191
Query: 552 SDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMK 611
SDGIG I+ + A VA+ + S PSA+QIRY GYKGVVA PA ++SLR SM
Sbjct: 192 SDGIGTISTEFATRVAR--RCRASTVPSAFQIRYGGYKGVVAVDPA--SCFKLSLRPSMS 247
Query: 612 KFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDV 671
KF S T+L++ TR+ P +LNR+II+LLSTL V DE+F +QA L+ ML+ S
Sbjct: 248 KFPSEQTTLDVLEKTRYIPSYLNREIISLLSTLEVPDEVFERMQAHQVELLDRMLLDSAA 307
Query: 672 AFEVLTASCAEQGNTAAI-MLSAGFKPQTEPHLQGMLTY--------------------- 709
++VL A + + + M+ AGF P TEP+++ +L
Sbjct: 308 TYDVLRVLYAGECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGR 367
Query: 710 -------ELGELKECQCFIQVS---------ESSLENCFSKHGSRFAETKKLQVINGFVV 753
E L+ QCF+QVS E + + FA + G VV
Sbjct: 368 LLMGCLDEQRVLRYGQCFVQVSPLQGVPVEEEIHCDRGVTARNQAFA-------VTGSVV 420
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
+AKNPCL PGDV +LEAVD PELHH+ DC+VFPQ+G RPH NE SGSDLDGD Y+V+WD
Sbjct: 421 VAKNPCLHPGDVLVLEAVDVPELHHMVDCIVFPQQGPRPHPNECSGSDLDGDQYFVSWDS 480
Query: 814 NLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-------------NLGQICNAHVVHADRSE 860
LIPP + PPM A L V + +LG I +AH+ +D SE
Sbjct: 481 ALIPPKRH--PPMNYEAPPAMELDHSVRLEEIQEFFVNWITSDSLGVIAHAHLALSDWSE 538
Query: 861 YGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRL 920
D C+ LA+L + AVD PKTG MP L+P++YPDFME +TY S +++G+L
Sbjct: 539 LQTRDPKCMELARLYSVAVDFPKTGVPAVMPPELRPEQYPDFMEKRNKRTYISTRVIGKL 598
Query: 921 YRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQ 980
YR I+ ++ + + S V D YD L V G +A+ K Y+ +L +L
Sbjct: 599 YRSIRESH-RDTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFKECYNSKLTSILNH 657
Query: 981 YNVNRKEFR--HIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEK 1038
Y V+ E I S+ +Y+ R+QG+ R+ + A KE R F+ E+++NE
Sbjct: 658 YKVSEAEIMSGSIRSLARYSRRRQGDAMARVVLAAKALVKEARGWFDDGG---EITENEA 714
Query: 1039 NVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWI 1082
KA AWY VTYH E K+S LLSF W+
Sbjct: 715 CA----KAFAWYHVTYHPEARKES------------DLLSFPWV 742
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 327/949 (34%), Positives = 481/949 (50%), Gaps = 134/949 (14%)
Query: 249 WIRTTDFSPSGAIGQCNS---------------KQRVQEDCLSQPVTIREEPDFE----- 288
WIR DF+PS IGQ + + V P +R+ F
Sbjct: 225 WIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNL 284
Query: 289 VPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLL---RCQPREVIVTA 345
VP+ P +S++I+F +NA++ +G L+ L D FF L+ R P + I A
Sbjct: 285 VPIITPPQAFD----ISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHP-DYIEHA 339
Query: 346 LKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFL 403
L+ +++ K + + LKD + +L P ++DD + V R+ ITP K Y+
Sbjct: 340 LEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCG 399
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
++++R FLRV+F+DE L ++ S +AP +N+ +T V
Sbjct: 400 PEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLH----SIDLAPRSSSPENNT---RTRV 452
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKN 511
+ RV S+L +G + +++ FLAFS++QLR++S W F+ S DI+ WMG+F +N
Sbjct: 453 YDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRN 512
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDI----KRNGYVFSDGIGKITPDLAMEVA 567
+AKYAAR+G F S+ T+ + E++ +PD+ K Y FSDGIGKI+ LA +VA
Sbjct: 513 VAKYAARLGQSFGSSRKTLCVKEHEIE-VIPDVEVERKNIMYCFSDGIGKISKTLAKKVA 571
Query: 568 QILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTR 627
+ L G PSA+QIRYAGYKGVVA P + ++SLR SM K+ S T L++ W++
Sbjct: 572 KKCGLTGH-TPSAFQIRYAGYKGVVAIDPTSEK--KLSLRKSMLKYMSLDTQLDVLLWSK 628
Query: 628 FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA 687
+QP FLNRQ+I LLSTL + D++F Q +L+ +L A EVL + +
Sbjct: 629 YQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSI 688
Query: 688 AIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLENCFSKHGSRFAETK 743
L + + P EP L ML +L +LK ++ C ET+
Sbjct: 689 LKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLD-------ETR 741
Query: 744 KLQVINGFV-------------------VIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
L+ FV V+AKNPCL PGDVR+L+A+D LHH+ DC+V
Sbjct: 742 TLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVDCVV 801
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA----------- 833
FPQKG RPH NE SGSDLDGDLY+V WD L K PM PA +
Sbjct: 802 FPQKGKRPHPNECSGSDLDGDLYFVCWDSELT--CIKQVKPMSYEPAPSIQLDHDVTIEE 859
Query: 834 --KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
K ++ + LG I NAH V AD++ A CI LAKL + AVD PKTG +P
Sbjct: 860 VQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLP 919
Query: 892 SHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH----- 946
+L+ +YPDFM+ + TY SN +LG+L+R +K VSS D+N +I
Sbjct: 920 RNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVK-------DVSS--DVNTFEIFTKEVA 970
Query: 947 ---YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSR 1000
YD D+EV G + +A + K YD +L L+ Y + + +I M K +
Sbjct: 971 TKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAK-SFD 1029
Query: 1001 KQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
K+ +L E++ + + RKE R F + S + D E + +ASAWY VTYH ++
Sbjct: 1030 KRNDL-EQIAFAMKSLRKEVRSWFNENESKYTYEDIEDDEY--ARASAWYCVTYHPDYWG 1086
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNL 1109
+ +G+ R LSF W D L +IK +E ++ S P+++L
Sbjct: 1087 R----YNEGTQRD-HFLSFPWCVADKLIQIK---REKMSLRNSSPMSSL 1127
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 305/965 (31%), Positives = 461/965 (47%), Gaps = 124/965 (12%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNSKQ 268
AILL L +PRI + ++ D D W+R DF+P+ + G+C++
Sbjct: 179 AILLQLTYAPRIHIAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLV 238
Query: 269 RVQEDCLSQPVTIREEP------DFEVPVED---------PFFCMHYKEGVSFEIMFLVN 313
S + P + + D P V +E++F +N
Sbjct: 239 LKLSKGASVSYILESLPFSGELGELAIASMDVFGSSSNVVPLVDCPNGFSVPYEVLFRLN 298
Query: 314 AVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKN 373
+++H G L ++ F +L + + + + K ++ + ++ +
Sbjct: 299 SLVHMGKLVARHVNADLFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMR 358
Query: 374 PKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGL 422
K + + R+ ITP+K Y ++V A F RVTF+DE
Sbjct: 359 KKALSNKRESGKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDW 418
Query: 423 QTMNANVLSYYVAPIVKDITSNSFSQ--KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQ 480
++ N LS FS+ KTG++ R+ SIL +GF + ++Y FLAFS++Q
Sbjct: 419 SKLSPNALS-------ARTEQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQ 471
Query: 481 LRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDH 539
LR +S W F+ + +I+ WMG F ++++K AARMG FSS+ T E+ +V+
Sbjct: 472 LRGNSVWMFASNSSLTAENIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVE- 530
Query: 540 ELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACW 595
+PDI+ Y+FSDGIGKI+ A +VA+++ LD + PPSA+QIRY GYKGV+
Sbjct: 531 VIPDIEVTTDGTKYIFSDGIGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGVITID 590
Query: 596 PAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQ 655
P +SLR SMKKF+S T L I +W++ QP ++NR+II+LLSTL + DE+F ++Q
Sbjct: 591 PTS--FFNLSLRPSMKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQ 648
Query: 656 ASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY------ 709
+ + ML + A VL TAA ML G++P +EP+L +L
Sbjct: 649 QDDMHESDGMLTNKEAALSVLGKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAHRANRL 708
Query: 710 ----------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV 747
E +L+ Q +I+++++ E +S+ + K V
Sbjct: 709 TDIRTRCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAV 768
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPEL--HHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
I G V I KNPCL PGDVR+LEAV P L L DC+VFPQ+G+RPH NE SG DLDGD
Sbjct: 769 IVGKVAITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGD 828
Query: 806 LYYVTWDENLIPPSKKSCPPMECTPAE-------------AKPLTCHVNHQNLGQICNAH 852
L+++TWD+ LIP +K PM+ T K ++ + LG I AH
Sbjct: 829 LFFITWDDKLIP--EKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAH 886
Query: 853 VVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYK 912
++HADR A C+ LA L + AVD KTG MP L+P+++PDFME E Y
Sbjct: 887 LIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYV 946
Query: 913 SNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDG 972
SN +LG+LYR A + + P YD DLEV G +F A + +Y
Sbjct: 947 SNGVLGKLYR---AALRHEEDAEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAE 1003
Query: 973 QLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEK 1026
+L L+ Y+ R++ R+ + ++++ E+++R+ + A E R
Sbjct: 1004 RLGALMTYYSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRA 1063
Query: 1027 MNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
D + ASAWY VTYH + +G R SF WI D
Sbjct: 1064 CKEDDA----------SRVASAWYHVTYHPD---------RRGEKR---FWSFPWIICDT 1101
Query: 1087 LARIK 1091
L IK
Sbjct: 1102 LLAIK 1106
>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 312/976 (31%), Positives = 471/976 (48%), Gaps = 145/976 (14%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNSKQ 268
AILL L +PRI + ++ D D W+R DF+P+ + G+C++
Sbjct: 179 AILLQLTYAPRIYTAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNNSFGECST-- 236
Query: 269 RVQEDCLSQPVT-IREEPDFEVPVEDPFFCMHYKEG----------------VSFEIMFL 311
V + PV+ I E F +E+ G V +E++F
Sbjct: 237 LVLKLSKGVPVSDILESLPFSGELEELAISSMLAFGSSSNVVPLVDCPNGFSVPYEVLFR 296
Query: 312 VNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIY----SYKRPVFDAYEKLKDVQ 367
+N+++H G L ++ F +L E+ + L+ I+ K ++ + ++
Sbjct: 297 LNSLVHMGKLVARHVNADLFKVL----EELSIDTLRRIFEKMSKLKSTCYEPLQFIRHEA 352
Query: 368 ECLIKNPK-LNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRFLRV 415
+ K+ K K+ + R+ ITP+K Y ++V A F RV
Sbjct: 353 HSMSKSKKAFLSNKKDGGKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARV 412
Query: 416 TFMDEGLQTMNANVLS------YYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
TF+DE ++ N LS ++ P+ KTG++ R+ SIL +GF + +
Sbjct: 413 TFVDEDWSKLSPNALSARTEQGFFSTPL-----------KTGLYHRILSILKEGFCIGPK 461
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHA 528
+Y FLAFS++QLR +S W F+ + I+ WMG F ++++K AARMG FSS+
Sbjct: 462 KYEFLAFSASQLRGNSVWMFASNNSLTAESIRRWMGHFEDIRSVSKCAARMGQLFSSSRQ 521
Query: 529 TVEIPPTEVDHELPDIKRNG----YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
T EI +V+ +PDI+ Y+FSDGIGKI+ A ++A++ LD + PPSA+QIR
Sbjct: 522 TFEISSYDVE-VIPDIEVTSDGTKYIFSDGIGKISTRFARQIAKLFGLDPAHPPSAFQIR 580
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
Y GYKGV+ P +SLR SMKKF+S T L I +W++ QP ++NR+II+LLSTL
Sbjct: 581 YGGYKGVITIDPTS--FFNLSLRPSMKKFESKSTMLNITNWSKSQPCYVNREIISLLSTL 638
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQ 704
+ DE+F ++Q + + ML + A VL TA+ M+ G++P +EP+L
Sbjct: 639 GIKDEVFESMQQDDMHESDGMLTNKEAALSVLGKIGGADTKTASEMVLQGYEPSSEPYLL 698
Query: 705 GMLTYE----------------------LGELKEC------QCFIQVSESSLENCFSKHG 736
+L +G L E Q +I+++++ E +S+
Sbjct: 699 MILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDETCTLDYGQVYIRITKNRKEQKYSEQP 758
Query: 737 SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL--HHLCDCLVFPQKGDRPHT 794
+ K VI G V + KNPCL PGDVR+LEAV P L L DC+VFPQ+G+RPH
Sbjct: 759 FFCNDDGKTAVIVGKVAVTKNPCLHPGDVRVLEAVYDPALDARGLIDCVVFPQRGERPHP 818
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN------------- 841
NE SG DLDGDL+++TWD+ LIP +K PM+ T + + V
Sbjct: 819 NECSGGDLDGDLFFITWDDKLIP--EKVDAPMDYTATRPRIMDHAVTLEEIQKHFVNYMI 876
Query: 842 HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPD 901
+ LG I AH++HADR+ A C+ LA L + AVD KTG MP L+P+++PD
Sbjct: 877 NDALGVISTAHLIHADRNPLKARSPECLQLAALHSMAVDFAKTGAPAEMPVALRPREFPD 936
Query: 902 FMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTA 961
FME E Y S +LG+LYR A + + + P YD DLEV G F
Sbjct: 937 FMERWERPMYVSTSVLGKLYR---AALRHEENAEALLPAGPPRCVYDPDLEVAGFDKFLD 993
Query: 962 DARNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSA 1015
A Q Y +L L+ Y+ ++ R+ + ++++ E+++R+ + A
Sbjct: 994 TAEEQYEVYAEKLGTLMTYYSAEHEDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDA 1053
Query: 1016 FRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVV 1075
E R D D K ASAWY VTYH + +G R
Sbjct: 1054 LHAEVRGWLRARKED----DASK------LASAWYHVTYHPD---------RRGEKR--- 1091
Query: 1076 LLSFAWIANDYLARIK 1091
SF W+A D L IK
Sbjct: 1092 FWSFPWVACDTLLAIK 1107
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 319/977 (32%), Positives = 482/977 (49%), Gaps = 137/977 (14%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNS-- 266
A+LL L PRI + A ++ D + + W+RTTDFS +IG S
Sbjct: 177 ALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFF 236
Query: 267 ----KQRVQEDCLS---------QPVTIREEPDFEVPVED-PFFCMHYKEGVSFEIMFLV 312
++ D + +++ + F P E P + +E +F +
Sbjct: 237 WEIVEESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQL 296
Query: 313 NAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECL-- 370
N+++H ++ ++D DLL E + ++ YE LK V+ L
Sbjct: 297 NSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNST---CYEPLKYVRTQLHV 353
Query: 371 --IKNPKL--NEGPKNIDD-IAEVRRLVITPTKAYWF---LESKD--------VADRFLR 414
IK + ++ + +D+ I R +ITP+K Y LE+ + A F+R
Sbjct: 354 LSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMR 413
Query: 415 VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ--KTGVFKRVKSILSDGFNLCGRRYS 472
+TF++E + N +S + FS+ +T ++KRV +IL DG + +R+
Sbjct: 414 ITFVEEDWSKLPNNAISI-------TLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFE 466
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVE 531
FLAFS++QLR +S W F+ + DI+ WMG F ++++K AARMG FSS+ T E
Sbjct: 467 FLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFE 526
Query: 532 IPPTEVDHELPDIKRNG----YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAG 587
+ P +VD +PDI+ Y FSDGIGKI+ A ++A+ LKLD + PSA+QIRY G
Sbjct: 527 MAPQDVDL-IPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGG 585
Query: 588 YKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVS 647
YKGV+A + ++SLR SM KF+S + L + W+ P FLNR+II+LLSTL +
Sbjct: 586 YKGVIAV--DRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIK 643
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI-MLSAGFKPQTEPHLQGM 706
DE +Q L ML + A +VL + N+ + ML ++P +EP+L M
Sbjct: 644 DEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMM 703
Query: 707 L----TYELGELK-ECQCFIQ--------VSESSLEN--------CFSKHGSRFAETK-- 743
L TY+L +LK C+ F+ + E+ L N +K +F +
Sbjct: 704 LKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLR 763
Query: 744 ------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH--LCDCLVFPQKGDRPHTN 795
++I G VV+ KNPCL PGD+R+L+AV EL L DCLVFPQKG RPH N
Sbjct: 764 NVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPN 823
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN----HQ-------- 843
E SG DLDGDL++++WD++LIP ++ PM+ T + + V HQ
Sbjct: 824 ECSGGDLDGDLFFISWDKDLIPAQTEN--PMDYTGRRPRIMDHKVTLEEIHQFFVDYMIN 881
Query: 844 -NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
LG I AH+VHADR A C+ LA+L + AVD KTG MP LKP+++PDF
Sbjct: 882 DTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDF 941
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP--VDIHYDTDLEVPGSVDFT 960
ME E Y S +LG+LYR D N+ V ++ ++ YD LEV G F
Sbjct: 942 MERFEKPMYISKGVLGKLYR---ATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFL 998
Query: 961 ADARNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYS 1014
A + + Y ++ L+ Y ++ ++ S + ++R+ G++++R+ S
Sbjct: 999 ETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVK 1058
Query: 1015 AFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSV 1074
+ E ++ FE SD + + Y+ ASAWY VTYH ++ S
Sbjct: 1059 DLQLEAKEWFE---SDCQPHE------YQLMASAWYHVTYHPKYY-----------IESS 1098
Query: 1075 VLLSFAWIANDYLARIK 1091
LSF WI D L IK
Sbjct: 1099 TFLSFPWIVGDILLHIK 1115
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 49/81 (60%)
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFM 903
LG I AH+VHAD A C+ LA+L + AVD KTG + MP LKPK++PDFM
Sbjct: 1132 TLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFAKTGALAEMPRVLKPKEFPDFM 1191
Query: 904 EIEEYQTYKSNKILGRLYRQI 924
E E Y S +LG+LYR +
Sbjct: 1192 ERFEKPMYVSKGVLGKLYRAL 1212
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 316/934 (33%), Positives = 463/934 (49%), Gaps = 127/934 (13%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFE-----VPVED-PFFC 297
D D W+RTTD S +IGQ S + L T R P ++ + +ED FC
Sbjct: 211 DFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTFRNFPYYQEDMNRLDLEDGEEFC 270
Query: 298 MHYK---------EGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKH 348
+ + +++E++F +N+++H ++ + +LR + L+
Sbjct: 271 SASETVPLIRCGSDKLAYEVLFQLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQK 330
Query: 349 IYSYKRPVFDAYEKLKD-VQECLIKNPK-LNEGPKNIDDIAEVRRLVITPTKA------- 399
++ K +D +K ++E L PK L E ++I R +ITP+K
Sbjct: 331 LHKLKMTCYDPLSFVKQSLRESLSSPPKSLTE-----NNIMSCHRALITPSKIFCLGPEY 385
Query: 400 ----YWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKR 455
Y A F+RVTF++E + AN +S I + I + F +TG++ R
Sbjct: 386 ETSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAIS---TSIQRGIFAKPF--RTGIYHR 440
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAK 514
+ SIL DGF + +R+ FLAFS++QLR +S W F+ DI+ WMG F ++++K
Sbjct: 441 ILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSK 500
Query: 515 YAARMGLCFSSTHATVEIPPTEVDHELPDIKRN----GYVFSDGIGKITPDLAMEVAQIL 570
AARMG FSS+ T +P +V+ +PDI+ Y FSDGIGKI+ A +VA
Sbjct: 501 CAARMGQLFSSSLQTFVVPVQDVEI-IPDIEVTTDGIDYCFSDGIGKISLSFAKQVAH-- 557
Query: 571 KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQP 630
K S PSA+QIRY GYKGVVA ++ ++SLR SM KF S + L + W+ P
Sbjct: 558 KCGLSHTPSAFQIRYGGYKGVVAV--DRNSFRKLSLRSSMLKFDSENRMLNVTKWSESMP 615
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAI 689
+LNR+II+LLSTL V+DEIF +Q +L ML + A +VL + A+ N
Sbjct: 616 CYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILVQ 675
Query: 690 MLSAGFKPQTEPHLQGML-TYELGELKECQ--CFIQVSESS-LENCFSKHG--------S 737
ML G++P EP+L ML Y L E + C I V + L C + G
Sbjct: 676 MLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDYGQVYV 735
Query: 738 RFAETK-KLQ---------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHH--L 779
R TK +LQ I G V + KNPCL PGD+R+LEAV EL L
Sbjct: 736 RITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGL 795
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DC++FPQ G RPH NE SG DLDGD ++++WDE L+P ++ PM+ + + +
Sbjct: 796 VDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEA--PMDYVGGRQRIMDHN 853
Query: 840 VN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
V + LG I AH+VHAD A E C+ LA L + AVD KTG
Sbjct: 854 VTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGA 913
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDE---NISVSSEVDINPV 943
MP +LKP+++PDFME E Q Y S+ +LG+LYR I + + N S ++
Sbjct: 914 PAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKI----A 969
Query: 944 DIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKY 997
+ YD DLEV G DF A K Y +++ L+ Y ++ RH + +
Sbjct: 970 EATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQR 1029
Query: 998 NSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHRE 1057
++RK G++++R+ S +KE ++ FE + E ++ ASAWY VTYH
Sbjct: 1030 DNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTE---------HQCMASAWYHVTYHPT 1080
Query: 1058 WVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
+ + ++ LSF WI D L IK
Sbjct: 1081 YFHERMN-----------CLSFPWIVGDILLNIK 1103
>gi|315307478|gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 350/1125 (31%), Positives = 531/1125 (47%), Gaps = 185/1125 (16%)
Query: 79 VHFATSTYITRAMDAAEHMELFLNGRALKVSLGPEN----PFRLNQR--GG--------T 124
V FA ++ A+ + H L +LK+S ++ P R + R GG +
Sbjct: 58 VQFAAPQAMSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSS 117
Query: 125 SAPLKLPDVYVEIGSLVTQD----EFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFAL 180
L++ + + + + + EF+V G DFL D T CF AL
Sbjct: 118 DDCLRVLERWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGSACNAL 177
Query: 181 KSSAEHAVIKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLV-P 239
+++ + R++ S P + + + D +
Sbjct: 178 -------LLRVRYAPRTYRKV-------------------SGPNVASKFSTDRYHICKEK 211
Query: 240 FDLLDDDDPWIRTTDFSPSGAIGQCNSKQR-----------------VQEDCLSQPVTIR 282
FD L W+RTTDFS +IGQ S +ED S + R
Sbjct: 212 FDFL-----WVRTTDFSRIKSIGQSTSFYWEFNAGFSISDMSTYLPCYREDIQSPSLEAR 266
Query: 283 EEPDFEVPVED-PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV 341
E F P E P +++EI+F +NA++H ++ + +L P E
Sbjct: 267 GE--FSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISIAAVDTDLIGILSVLPVET 324
Query: 342 IVTALKHIYSYKRPVFD--AYEKLKDVQECLIKNP-KLNEGPKNIDDIAEVRRLVITPTK 398
V L+ + + P ++ ++ K K + P ++E KN ++ R +ITPTK
Sbjct: 325 AVMILQKLRLLQSPCYNPVSFVKAKLPTGKNFRIPLSVSERLKN-HNVMSCHRALITPTK 383
Query: 399 AYWF---LESK--------DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFS 447
Y LE+ + A F+RVTF++E ++AN +S V + S F
Sbjct: 384 IYCLGPELETANYVVKNFAEYASDFMRVTFVEEDWSKLSANAISTGVH---LGVFSRPF- 439
Query: 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF 507
KT ++ R+ SIL +G + +R+ FLAFS++QLR +S W F+ E DI+ WMG F
Sbjct: 440 -KTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASNDEVKAEDIREWMGCF 498
Query: 508 TA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD---IKRNG--YVFSDGIGKITPD 561
++I+K A+RMG FSS+ T+ +P +V E+ D +K +G Y FSDGIGKI+
Sbjct: 499 KKIRSISKCASRMGQLFSSSMPTLVVPVQDV--EIIDDIEVKTDGINYCFSDGIGKISLP 556
Query: 562 LAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLE 621
A +VA+ L+ P SA+QIRY GYKGVVA ++ +MSLR SM KF+S L
Sbjct: 557 FARQVAEKCGLNHIP--SAFQIRYGGYKGVVAV--DRNSFWKMSLRDSMLKFESKVRMLN 612
Query: 622 ICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCA 681
+ W+ P FLNR+I+TL STL + DE+F +Q L ML + A + L +
Sbjct: 613 VTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGG 672
Query: 682 EQGNTAAIMLSAGFKPQTEPHLQGMLT--YE--LGELK-ECQCF---------------- 720
+ + +P +P+L ML YE L +LK C+ F
Sbjct: 673 VNSKNILVEMLQFDEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGT 732
Query: 721 ---------IQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
I++ ++ LE C + R + + VI G VV+ KNPCL PGDVR+LEAV
Sbjct: 733 LNYGQVYLCIKMKKAELE-CADQSYFRKVDEETAIVI-GKVVVTKNPCLHPGDVRVLEAV 790
Query: 772 DRPELHH--LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT 829
P+L L DCLVFP+KG+RPH NE SG DLDGD ++++WD++LIP + PPM+ T
Sbjct: 791 YEPQLEEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTE--PPMDYT 848
Query: 830 PAEAKPLTCHVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAA 876
+ + V + LG I AH+VHADR Y A ENC+ LA L +
Sbjct: 849 GRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPYKARSENCLALATLHS 908
Query: 877 TAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSS 936
AVD KTG MP LKP+++PDFM+ Y S+ +LG+LYR + + + S
Sbjct: 909 MAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYR---ATINSTVQIRS 965
Query: 937 EV--DINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSM 994
+ ++ YD DLEV G + A K Y+ +++ L+ Y+V ++ I +
Sbjct: 966 KFVWTKEMAELAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYED--EILTG 1023
Query: 995 PKYN--------SRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKA 1046
YN +R+ GE++ER+ S ++E ++ F+ S K +++ A
Sbjct: 1024 NMYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFK--------SSCSKADEHQKLA 1075
Query: 1047 SAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
SAWY VTYH + ++ ++ LSF WI D L RIK
Sbjct: 1076 SAWYYVTYHPNYFEERMN-----------SLSFPWIVGDILLRIK 1109
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 318/955 (33%), Positives = 470/955 (49%), Gaps = 136/955 (14%)
Query: 227 YRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS--KQRVQEDCLSQPVT---I 281
YR K+D E L W+RTTDFSP +IG S + V+E S T +
Sbjct: 204 YRFLKEDFEFL-----------WVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVFTSFPL 252
Query: 282 REEPDFEVPVED-----------PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSF 330
+E ++ +ED P + + +E +F +N+++H ++ + D
Sbjct: 253 YKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLASVDDEL 312
Query: 331 FDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECL--IKNPK--LNEGPKNI--- 383
DLL E + ++ F YE LK V+ L + N K L + P+N
Sbjct: 313 IDLLADLDEETRAVVFQKLHKMS---FTCYEPLKFVKTQLHVLSNKKKGLLQSPQNRLTD 369
Query: 384 DDIAEVRRLVITPTKAYWF---LESKD--------VADRFLRVTFMDEGLQTMNANVLSY 432
+I R +ITPTK Y LE+ + +A F+R+TF++E + N +S
Sbjct: 370 SNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAVS- 428
Query: 433 YVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV 492
+ K I S KT ++KR+ +IL DG + +R+ FLAFS++QLR +S W F+
Sbjct: 429 --TGVQKGIFSKPL--KTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASN 484
Query: 493 GETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--- 548
DI+ WMG F ++++K AARMG FSS+ T E+ +V+ +PDI+
Sbjct: 485 DNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEM-IPDIEVTSDGV 543
Query: 549 -YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLR 607
Y FSDGIGKI+ A +VAQ L LD +P SA+QIRY G+KGV+A + ++SLR
Sbjct: 544 SYCFSDGIGKISQCFARQVAQKLNLDHTP--SAFQIRYGGFKGVIAI--DRHSFRKLSLR 599
Query: 608 GSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLV 667
SM KF+S + L + W+ P FLNR+II+LL+TL V DE+ +Q L ML
Sbjct: 600 SSMLKFESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLT 659
Query: 668 ASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELK-ECQCFI 721
S A +VL + + A+ + ML +P +EP+L ML Y+L +LK C+ F+
Sbjct: 660 DSKAALDVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFV 719
Query: 722 Q--------VSESSLEN--------CFSKHGSRFAETK--------KLQVINGFVVIAKN 757
+ E+ L N +K F + ++I G VV+ KN
Sbjct: 720 PKGRVLVGCLDETGLLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKN 779
Query: 758 PCLRPGDVRILEAVDRPELHH--LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL 815
PCL PGD+R+L+A+ EL L DCLVFPQKG RPH NE SG DLDGDL++++WD++L
Sbjct: 780 PCLHPGDIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKDL 839
Query: 816 IPPSKKSCPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHVVHADRSEYG 862
IP ++ PM+ T + + V + LG I AH+VHADR +
Sbjct: 840 IPCQTEA--PMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDK 897
Query: 863 AFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYR 922
A C+ LA+L + AVD KTG MP LKP+++PDFME + Y S +LG+LY
Sbjct: 898 AKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYH 957
Query: 923 QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYN 982
I + I S + YD LEV G F A K Y +++ L+ Y
Sbjct: 958 AIIES-QMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYG 1016
Query: 983 VNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDN 1036
++ ++ S + ++R+ G++++R+ S ++E ++ FE E
Sbjct: 1017 AETEDEMLLGNVQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPRE---- 1072
Query: 1037 EKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
Y+ ASAWY VTYHR S LSF WI D L +I+
Sbjct: 1073 -----YKPMASAWYHVTYHR----------SHYCQESPCFLSFPWIVGDILLQIR 1112
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 310/937 (33%), Positives = 460/937 (49%), Gaps = 126/937 (13%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCNSK-QRVQEDCLSQPV----TIREEPDFEVPVED----- 293
D D W+RTT+FSP ++GQ S V+ED + + +E ++ +ED
Sbjct: 209 DYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFYKETQKDIVLEDGEEFC 268
Query: 294 ------PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALK 347
P +++E+ + +N+++H ++ + D L + + L+
Sbjct: 269 STSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSAANQDLIDFLCTLDIDTALNVLQ 328
Query: 348 HIYSYKRPVFDAYEKLKDVQECLIKNPKL---NEGPKNIDDIAEVRRLVITPTKAYWF-- 402
++ K +D LK +N K + + +++ R+++TP++ Y
Sbjct: 329 RLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSNNVMNCYRVLVTPSRIYCLGP 388
Query: 403 -LESKDV--------ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVF 453
LE+ + A F+RVTF++E + A ++ I + I S + +T ++
Sbjct: 389 ELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVT---TSIQRGILSKPY--RTEIY 443
Query: 454 KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNI 512
R+ ++L DG + +R+ FLAFS++QLR +S W F+ +I+ WMG F ++I
Sbjct: 444 HRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSI 503
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN----GYVFSDGIGKITPDLAMEVAQ 568
+K AARMG FSS+ T+ +P +V+ +PDI+ N Y FSDGIGKI+ A +VA
Sbjct: 504 SKCAARMGQLFSSSTQTLVVPTRDVEI-IPDIEVNTDGIDYCFSDGIGKISLSFARQVAD 562
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
K + PSA+QIRY GYKGV+A ++ ++SLR SM KF+S + L +
Sbjct: 563 --KCGVNHIPSAFQIRYGGYKGVIAV--DRNSFRKLSLRDSMLKFESKNKMLNVTKCCDS 618
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTA 687
P +LNR+I TLLSTL V DE F +Q L ML DVA VL A+ N
Sbjct: 619 MPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADSNNIL 678
Query: 688 AIMLSAGFKPQTEPHLQGMLTYELGEL-----KECQCF---------------------- 720
ML+ G++P EP+L ML L C+ F
Sbjct: 679 VQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQV 738
Query: 721 ---IQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
I +++S L+N + ETK ++ G VV+ KNPCL PGDVR+LEA+ EL
Sbjct: 739 YACITLTKSELQNRNQNYFHTIDETK--SILLGKVVVTKNPCLHPGDVRVLEAIFHVELE 796
Query: 778 H--LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP 835
L DCL+FPQKG RPHTNE SG DLDGDLY+++WDENLIPP K+ PM+ T +
Sbjct: 797 EKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPP--KTEAPMDYTGRRPRI 854
Query: 836 LTCHVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
+ V + LG I AH+VHADR A C+ LA L + AVD
Sbjct: 855 MDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFA 914
Query: 883 KTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENIS--VSSEVDI 940
KTG MP LKP+++PDFME + Y S+ +LG+LYR + ++ S V SE
Sbjct: 915 KTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRLVWSEEAA 974
Query: 941 NPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK------EFRHIWSM 994
+ YD DLEV G F A K Y +++ L+ Y + + R S
Sbjct: 975 RAI---YDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMGDLRSRASY 1031
Query: 995 PKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTY 1054
+ ++RK G++++R+ S RKE ++ FE NS L+ ASAWY VTY
Sbjct: 1032 LQRDNRKYGDMKDRILLSVKNLRKEVKEWFE--NSCDPLNR-------RMMASAWYHVTY 1082
Query: 1055 HREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
H + K+ + LSF W +D L IK
Sbjct: 1083 HPSYFKEDM-----------FYLSFPWAVSDVLLNIK 1108
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 320/958 (33%), Positives = 476/958 (49%), Gaps = 142/958 (14%)
Query: 227 YRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNSK-QRVQEDCLSQPV----TI 281
YR K+D E L W+RTTDFSP +IG S + E+ L+ V +
Sbjct: 205 YRFCKEDFEFL-----------WVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVFKSFPL 253
Query: 282 REEPDFEVPVED-----------PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSF 330
+E ++ +ED P + + +E +F +N+++H ++ + D
Sbjct: 254 YKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLASVDDEL 313
Query: 331 FDLLRC---QPREVIVTALKHIYSYKRPVFDAYEKLKDVQECL--IKN-----PKLNEGP 380
DLL + R VI L + F YE LK V+ L + N P+ ++
Sbjct: 314 IDLLAGLDEETRAVIFLKLHKM------SFTCYEPLKFVKTQLHVLSNKKKGLPQSSQKR 367
Query: 381 KNIDDIAEVRRLVITPTKAYWF---LESKDV--------ADRFLRVTFMDEGLQTMNANV 429
+I R +ITPTK Y LE+ + A F+R+TF++E + N
Sbjct: 368 LTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNA 427
Query: 430 LSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF 489
+S V K + S KT ++KR+ +IL DG + +R+ FLAFS++QLR +S W F
Sbjct: 428 VSTGVQ---KGLFSKPL--KTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLF 482
Query: 490 SKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIK--R 546
+ DI+ WMG F ++++K AARMG FSS+ T E+ +V+ +PD++
Sbjct: 483 ASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEI-IPDVEVIS 541
Query: 547 NG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRM 604
+G Y FSDGIGKI+ A +VAQ LKLD +P SA+QIRY G+KGV+A + ++
Sbjct: 542 DGVSYCFSDGIGKISQSFARQVAQKLKLDHTP--SAFQIRYGGFKGVIAV--DRRSFRKL 597
Query: 605 SLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNL 664
SLR SM KF+S ++ L + W+ P FLNR+II+LLSTL V DE+ +Q L
Sbjct: 598 SLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDLLGR 657
Query: 665 MLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELK-ECQ 718
ML S A EVL + + A+ + ML +P +EP+L ML Y+L +LK C+
Sbjct: 658 MLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCR 717
Query: 719 CFIQ--------VSESSLEN--------CFSKHGSRFAETKKLQV--------INGFVVI 754
F+ + E+ L N +K +F + +V I G VV+
Sbjct: 718 IFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFGDENLRKVDGDDNTCIIVGKVVV 777
Query: 755 AKNPCLRPGDVRILEAVDRPELHH--LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
KNPCL PGD+R+L+A+ EL L DCLVFPQKG RPH NE SG DLDGDL++++WD
Sbjct: 778 TKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWD 837
Query: 813 ENLIPPSKKSCPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHVVHADRS 859
++LIP ++ PM+ T + + V + LG I AH+VHADR
Sbjct: 838 KDLIPCQTEA--PMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADRE 895
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGR 919
+ A C+ LA+L + AVD KTG MP LKP+++PDFME + Y S +LG+
Sbjct: 896 QDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGK 955
Query: 920 LYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLG 979
LYR I + I S + YD LEV G F A K Y +++ L+
Sbjct: 956 LYRAIIES-QMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMD 1014
Query: 980 QYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFEL 1033
Y ++ ++ S + ++R+ G++++R+ S ++E ++ FE E
Sbjct: 1015 FYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPHE- 1073
Query: 1034 SDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
Y+ ASAWY VTYH + + S LSF WI + L +I+
Sbjct: 1074 --------YKPMASAWYHVTYHPSYYCRE----------SPCFLSFPWIVGEILLQIR 1113
>gi|315307484|gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 347/1124 (30%), Positives = 530/1124 (47%), Gaps = 183/1124 (16%)
Query: 79 VHFATSTYITRAMDAAEHMELFLNGRALKVSLGPEN----PFRLNQR--GG--------T 124
V FA + A+ + H L +LK+S ++ P R + R GG +
Sbjct: 58 VQFAAPQAKSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSS 117
Query: 125 SAPLKLPDVYVEIGSLVTQD----EFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFAL 180
L++ + + + + + EF+V G DFL D T CF AL
Sbjct: 118 DDCLRVLERWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGSACNAL 177
Query: 181 KSSAEHAVIKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLV-P 239
+A PR+ S P + + + D +
Sbjct: 178 LLRVRYA-----------------------PRI---YQKVSGPNVASKFSTDRYHICKEK 211
Query: 240 FDLLDDDDPWIRTTDFSPSGAIGQCNSKQR-----------------VQEDCLSQPVTIR 282
FD L W+RTTDFS +IGQ S +ED S + R
Sbjct: 212 FDFL-----WVRTTDFSRIKSIGQSTSFYWEFNAGFSISDMSTYLPCYREDIQSPSLEAR 266
Query: 283 EEPDFEVPVED-PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV 341
E F P E P +++EI+F +NA++H ++ + +L P E
Sbjct: 267 RE--FSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISIAAVDTDLIGILSGLPVET 324
Query: 342 IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKL----NEGPKNIDDIAEVRRLVITPT 397
V L+ + + P ++ +K + KN ++ +E KN ++ RR +ITPT
Sbjct: 325 AVMILQKLRLLQSPCYNPVSFVK-AKLPTGKNYRIPLSVSERLKN-HNVMSCRRALITPT 382
Query: 398 KAYWF---LESK--------DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
K Y LE+ + A F+RVTF++E ++AN +S + + S F
Sbjct: 383 KIYCLGPELETANYVVKNFVEYASDFMRVTFVEEDWSKLSANAIS---TGVHLGVFSRPF 439
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
KT ++ R+ +L +G + +R+ FLAFS++QLR +S W F+ E DI+ WMG
Sbjct: 440 --KTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDEVKAEDIREWMGC 497
Query: 507 FTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD---IKRNG--YVFSDGIGKITP 560
F ++I+K A+RMG FSS+ T+ +P +V E+ D +K +G Y FSDGIGKI+
Sbjct: 498 FKKIRSISKCASRMGQLFSSSMPTLVVPVQDV--EIIDDIEVKTDGINYCFSDGIGKISL 555
Query: 561 DLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSL 620
A +VA+ L+ P SA+QIRY GYKGVVA ++ +MSLR SM KF+S L
Sbjct: 556 PFARQVAEKCGLNHIP--SAFQIRYGGYKGVVAV--DRNSFWKMSLRDSMLKFESKVRML 611
Query: 621 EICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC 680
+ W+ P FLNR+I+TL STL + DE+F +Q L ML + A + L +
Sbjct: 612 NVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLG 671
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLT--YE--LGELK-ECQCF--------------- 720
+ + ++P +P+L ML YE L +LK C+ F
Sbjct: 672 GVNSKNILVEMLQFYEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETG 731
Query: 721 ----------IQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
I++ ++ LE C + R + + VI G VV+ KNPCL PGDVR+LEA
Sbjct: 732 TLNYGQVYLCIKMKKAELE-CADQSYFRKVDEETAIVI-GKVVVTKNPCLHPGDVRVLEA 789
Query: 771 VDRPELHH--LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC 828
V P+L L DCLVFPQKG+RPH NE SG DLDGD ++++WD++LIP + PPM+
Sbjct: 790 VYEPQLEEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTE--PPMDY 847
Query: 829 TPAEAKPLTCHVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLA 875
T + + V + LG I AH+VHADR A ENC+ LA L
Sbjct: 848 TGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALATLH 907
Query: 876 ATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVS 935
+ AVD KTG MP LKP+++PDFM+ Y S+ +LG+LYR + +
Sbjct: 908 SMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYR---ATINSTVQTR 964
Query: 936 SEV--DINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRH 990
S+ ++ YD DLEV G + A K Y+ +++ L+ Y+V ++ +
Sbjct: 965 SKFVWTKEMAELVYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGN 1024
Query: 991 IWSMPKY---NSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKAS 1047
I++ ++ ++R+ GE++ER+ S ++E ++ F+ S K +++ AS
Sbjct: 1025 IYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFK--------SSCSKADEHQKLAS 1076
Query: 1048 AWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
AWY VTYH + ++ ++ LSF WI D L R+K
Sbjct: 1077 AWYYVTYHPNYFQERMN-----------SLSFPWIVGDILLRVK 1109
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 308/937 (32%), Positives = 459/937 (48%), Gaps = 126/937 (13%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCNSK-QRVQEDCLSQPV----TIREEPDFEVPVED----- 293
D D W+RTT+FSP ++GQ S V+ED + + +E ++ +ED
Sbjct: 209 DYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFYKETQKDIVLEDGEEFC 268
Query: 294 ------PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALK 347
P +++E+ + +N+++H ++ + D L + + L+
Sbjct: 269 STSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSAANQDLIDFLCTLDIDTALNVLQ 328
Query: 348 HIYSYKRPVFDAYEKLKDVQECLIKNPKL---NEGPKNIDDIAEVRRLVITPTKAYWF-- 402
++ K +D LK +N K + + +++ R+++TP++ Y
Sbjct: 329 RLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSNNVMNCYRVLVTPSRIYCLGP 388
Query: 403 -LESKDV--------ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVF 453
LE+ + A F+RVTF++E + A ++ I + I S + +T ++
Sbjct: 389 ELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVT---TSIQRGILSKPY--RTEIY 443
Query: 454 KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNI 512
R+ ++L DG + +R+ FLAFS++QLR +S W F+ +I+ WMG F ++I
Sbjct: 444 HRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSI 503
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN----GYVFSDGIGKITPDLAMEVAQ 568
+K AARMG FSS+ T+ +P +V+ +PDI+ N Y FSDGIGKI+ A +VA
Sbjct: 504 SKCAARMGQLFSSSTQTLVVPTRDVEI-IPDIEVNTDGIDYCFSDGIGKISLSFARQVAD 562
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
K + PSA+QIRY GYKGV+A ++ ++SLR SM KF+S + L +
Sbjct: 563 --KCGVNHIPSAFQIRYGGYKGVIAV--DRNSFRKLSLRDSMLKFESKNKMLNVTKCCDS 618
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTA 687
P +LNR+I TLLSTL V DE F +Q L ML DVA VL A+ N
Sbjct: 619 MPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADSNNIL 678
Query: 688 AIMLSAGFKPQTEPHLQGMLTYELGEL-----KECQCF---------------------- 720
ML+ G++P EP+L ML L C+ F
Sbjct: 679 VQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQV 738
Query: 721 ---IQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
I +++S L++ + ETK ++ G VV+ KNPCL PGDVR+LEA+ EL
Sbjct: 739 YACITLTKSELQSRNQNYFHTIDETK--SILLGKVVVTKNPCLHPGDVRVLEAIFHVELE 796
Query: 778 H--LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP 835
L DCL+FPQKG RPHTNE SG DLDGDLY+++WDENLIPP K+ PM+ T +
Sbjct: 797 EKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPP--KTEAPMDYTGRRPRI 854
Query: 836 LTCHVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
+ V + LG I AH+VHADR A C+ LA L + AVD
Sbjct: 855 MDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFA 914
Query: 883 KTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENIS--VSSEVDI 940
KTG MP LKP+++PDFME + Y S+ +LG+LYR + ++ S V SE
Sbjct: 915 KTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRLVWSEEAA 974
Query: 941 NPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK------EFRHIWSM 994
+ YD DLEV G F A K Y +++ L+ Y + + R S
Sbjct: 975 RAI---YDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMGDLRSRASY 1031
Query: 995 PKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTY 1054
+ ++RK G++++R+ S RKE ++ FE NS L+ ASAWY VTY
Sbjct: 1032 LQRDNRKYGDMKDRILLSVKNLRKEVKEWFE--NSCDPLNR-------RMMASAWYHVTY 1082
Query: 1055 HREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
H + K+ + SF W +D L IK
Sbjct: 1083 HPSYFKEDM-----------FYFSFPWAVSDVLLNIK 1108
>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 983
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 322/973 (33%), Positives = 472/973 (48%), Gaps = 132/973 (13%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNSKQ 268
AILL L RI + + DI D D D W+RTTDFS ++GQ S
Sbjct: 23 AILLKLKYGARIYKKISGPDIASKFSADRYHMCKEDFDFIWVRTTDFSSVKSVGQSTSFC 82
Query: 269 RVQEDCLSQPVTIREEPDF-----EVPVED-----------PFFCMHYKEGVSFEIMFLV 312
E+ L + P + EV +ED P + +EI+F +
Sbjct: 83 WEIEEGLEASDIFKSFPYYTEAREEVILEDGEEWGSASEIVPLVKCGSDSKLPYEILFQL 142
Query: 313 NAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIK 372
N+++H ++ + + L + L+ ++ +D +K +
Sbjct: 143 NSLVHTQKISLAAVDTNLITTLGSLTIDTATMILQKLHKLAVTCYDPLAFIKKQLHVPGR 202
Query: 373 NPK--LNEGPKNI--DDIAEVRRLVITPTKAYWF---LESKDV--------ADRFLRVTF 417
N K KN+ +I R +ITP+K Y LES + A F+RVTF
Sbjct: 203 NLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPELESSNYVVKNFASYASDFMRVTF 262
Query: 418 MDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFS 477
++E + AN +S I + I + F +TG++ R+ SIL DG + +++ FLAFS
Sbjct: 263 VEEDWSKLPANAIS---MSIQRGIFAKPF--RTGIYHRILSILRDGIVIGAKKFEFLAFS 317
Query: 478 SNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTE 536
++QLR +S W F+ + +I+ WMG F +I+K AARMG FSS+ T + P +
Sbjct: 318 ASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAARMGQLFSSSKQTFIVSPQD 377
Query: 537 VDHELPDIKRNG----YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVV 592
++ +PDI+ Y FSDGIGKI+ A +VAQ L+ +P SA+QIRY GYKGV+
Sbjct: 378 MEI-IPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCGLNRTP--SAFQIRYGGYKGVI 434
Query: 593 ACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFW 652
A ++ ++SLR SM KF+S + L + W+ P +LNR+IITLL+TL V DEIF
Sbjct: 435 AV--DRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLNREIITLLTTLGVKDEIFE 492
Query: 653 TVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYE 710
+Q LN ML + A VL + A N ML G++P EP+L ML Y
Sbjct: 493 GLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPNVEPYLSMMLQAYH 552
Query: 711 ---LGELK-ECQCF-------------------------IQVSESSLENCFSKHGSRFAE 741
L EL+ C+ F I ++++ L++ R E
Sbjct: 553 ENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQDADQASFHRVDE 612
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH--LCDCLVFPQKGDRPHTNEASG 799
T V+ G V++ KNPCL PGD+R+LEAV EL L DC++FPQKG+RPH NE SG
Sbjct: 613 TT--AVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKGERPHPNECSG 670
Query: 800 SDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-------------HQNLG 846
DLDGD ++++WD+ LIP +S PM+ + + V + LG
Sbjct: 671 GDLDGDQFFISWDKGLIPGETES--PMDYQGRRPRKMDHDVTLEEIQKFFIDYMINDTLG 728
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE 906
I AH+VHADR A C+ LA+L + AVD KTG MP LKPK++PDFME
Sbjct: 729 AISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPKEFPDFMERI 788
Query: 907 EYQTYKSNKILGRLYRQIKGAYDENISVSSEV--DINPVDIHYDTDLEVPGSVDFTADAR 964
+ + Y S +LG+LYR G D S+ N + YD DLEV G +F A
Sbjct: 789 DKKMYISGGVLGKLYR---GTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFEEFVEIAI 845
Query: 965 NQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFRK 1018
+ K Y +L+GL+ Y +++ ++ + ++R+ G+ ++R+ S + +K
Sbjct: 846 SHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILISVKSLQK 905
Query: 1019 EFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLS 1078
E ++ FE EK L ASAWY VTYH + ++ + LS
Sbjct: 906 EAKEWFESC-----CQAKEKQRL----ASAWYHVTYHPSYFQE-----------GITCLS 945
Query: 1079 FAWIANDYLARIK 1091
F WI D L IK
Sbjct: 946 FPWIVADILLNIK 958
>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 347/1127 (30%), Positives = 523/1127 (46%), Gaps = 171/1127 (15%)
Query: 72 KVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPEN----PFRLN---QRGGT 124
K H V F TS +++ +E +L G L ++ ++ P LN Q+G
Sbjct: 51 KSRGHGRVQFETSQSKLQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGIL 110
Query: 125 SAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSA 184
+ L + Y+E+ L T + +F V G C + L+
Sbjct: 111 HTGILLENDYMEV--LETWENVKTLIMPERKSLEFWVSHAKGEC---------YRLEVQF 159
Query: 185 EHAVIKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLL- 243
+ CE + E + A+LL L +P++ R + + D
Sbjct: 160 GDIIETCECSL-------------EDEKTALLLKLKHAPKLYQRVSGPGVASKFSSDRYH 206
Query: 244 ----DDDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFEVPVED------ 293
D + W+RTTDFS +IG +S ED L + P V D
Sbjct: 207 VCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLLSGLPYCNNDVMDLVLDEV 266
Query: 294 ----------PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIV 343
P + +EI+F +N+++H ++ + ++L + +
Sbjct: 267 GDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHKISLGAVKTDLIEVLSKLELDTAM 326
Query: 344 TALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNID-----DIAEVRRLVITPTK 398
L+ ++ + F+ +K L KN K N+ + ++ V R+++TP+K
Sbjct: 327 MILQKMHKLQSTCFEPVPFIKTRLHVLGKNSK-NQPSSSYSRLVNQNMMSVHRVLVTPSK 385
Query: 399 AYWF---LESKDV--------ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFS 447
Y LE+ + A FLRVTF++E ++ N +S V + I + +
Sbjct: 386 VYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAISMSVE---QGIFAKPY- 441
Query: 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF 507
+T ++ R+ SIL DG + +R+ FLAFS++QLR +S W F+ DI+ WMG F
Sbjct: 442 -RTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAEDIREWMGCF 500
Query: 508 TA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG----YVFSDGIGKITPDL 562
++++K AARMG FS++ T+E+ V+ LPDI+ Y FSDGIGKI+
Sbjct: 501 NKIRSVSKCAARMGQLFSTSFQTMEVQSPHVE-ILPDIEVTSDGVSYCFSDGIGKISQAF 559
Query: 563 AMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEI 622
A +VAQ K S PSA+QIRY GYKGV+A ++ ++SLRGSM KF+S + L I
Sbjct: 560 ASQVAQ--KCGLSYTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRGSMLKFESKNRMLNI 615
Query: 623 CSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAE 682
W+ P +LNR+I+ LLSTL V D++F + + L ML ++ A +VL +
Sbjct: 616 TKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLESIGG- 674
Query: 683 QGNTAAI---MLSAGFKPQTEPHLQGMLTY----ELGELK-ECQCFIQVSESSLENCFSK 734
G+ I ML G+ P EP+L ML +L +L+ C+ FI L C +
Sbjct: 675 -GDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRV-LVGCLDE 732
Query: 735 HG--------SRFAETK-KLQ---------------VINGFVVIAKNPCLRPGDVRILEA 770
G +R TK +LQ V+ G VV+ KNPCL PGDVR+LEA
Sbjct: 733 TGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVRVLEA 792
Query: 771 VDRPELHH--LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC 828
V L DC++FPQKG+RPH NE SG DLDGDLY+++WDENLIP +++ PM+
Sbjct: 793 VYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIP--RQTVTPMDY 850
Query: 829 TPAEAKPLTCHVNHQ-------------NLGQICNAHVVHADRSEYGAFDENCILLAKLA 875
T + + V Q LG I AH+VHADR A + C+ LA L
Sbjct: 851 TGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLATLH 910
Query: 876 ATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVS 935
+ AVD KTG MP LKP+++PDF+E + Y S +LG+LYR I N SV
Sbjct: 911 SMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIV-----NSSVR 965
Query: 936 SEVD----INPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK----- 986
S D + + YD L G F A+N K +Y ++N LL Y ++
Sbjct: 966 SNSDDLGSVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILT 1025
Query: 987 -EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQK 1045
R + ++R+ EL++R+ S + +KE + F + E +++
Sbjct: 1026 GNLRQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDE---------HKKL 1076
Query: 1046 ASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKI 1092
ASAWY VTYH + +GSA L F W+ D L IK+
Sbjct: 1077 ASAWYHVTYHPSYC--------EGSANC---LGFPWVVGDILLDIKL 1112
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 345/1086 (31%), Positives = 511/1086 (47%), Gaps = 160/1086 (14%)
Query: 76 HAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYV 135
+A V F T + + +AA+ L LKV + + R S KL DV +
Sbjct: 51 YAIVQFQTEEHASLVKNAAQRKILRRGHYYLKVHPSDRD---IVPRPRVSM-FKLEDVTL 106
Query: 136 EIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCEFKV 195
G L+ + W +F + K F L+ K E
Sbjct: 107 HFGCLLKETILSALWSRTGVSVEFGFN----------LKKIYFYLQLPNSSIEYKLELSY 156
Query: 196 FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAK-DDIEVLVP-FDLLDD--DDPWIR 251
+ EI + + + +L+ + ++P+I +T + + P F+ D DD W R
Sbjct: 157 ESIWEIQLQRPPKSQTKF-LLIQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTR 215
Query: 252 TTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFEVP-VEDPFFCMH----------- 299
TTDF+ S +IGQ CL P ++P + D FF H
Sbjct: 216 TTDFTSSSSIGQSYIL------CLEVPRRC------DLPNIRDYFFYYHEYNHDFECRSG 263
Query: 300 ---------------YKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQ--PREVI 342
+ V +EI+F +N ++ G L+ + DSFF L+ P + I
Sbjct: 264 GYPYSSDTRFVPIVKSRGYVPYEILFKINHLVQNGTLSGPTVDDSFFRLVSPAFVPIDHI 323
Query: 343 VTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAY 400
AL+ + K+ + L + ++ + P ++DD + V R+ +TP K Y
Sbjct: 324 KRALEMMSYLKKTCLNPTSWLSEQYSKFRRSRYVQPSPNISLDDGLVYVYRVQVTPAKVY 383
Query: 401 WFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQK 449
++ +V++R FLR++F+DE + + A LS A S + +
Sbjct: 384 FYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSA-------SGHDANR 436
Query: 450 TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-T 508
T ++KRV +LSDG + G+ + FLAFSS+QLRD+SAW F+ + DI+ WMG+F
Sbjct: 437 TALYKRVLLVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRN 496
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEV 566
+N+AKYAAR+G FSS+ T+++ EV+ E+ DIK NG +VFSDGIGKI+ A EV
Sbjct: 497 IRNVAKYAARLGQSFSSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAFANEV 554
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
A L P SA+QIRY GYKGVVA P ++SLR SM KF+S + ++++ +++
Sbjct: 555 AMKCNLKRFAP-SAFQIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDVLAYS 611
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGN 685
++QPGFLNRQ+ITLLSTL V D +F Q ++LN M+ A E + E N
Sbjct: 612 KYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITN 671
Query: 686 TAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLENCFSKHGSRFAE 741
+L G++P EP+L +L +L ELK + ++ C E
Sbjct: 672 AVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLD-------E 724
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSD 801
T+ L+ F +R V+ DRPH NE SGSD
Sbjct: 725 TRTLKYGQVF-------------IRATSGVN---------------DNDRPHPNECSGSD 756
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQI 848
LDGD+Y+V+WD +LIPP + PM+ TPA + L T ++ +++LG I
Sbjct: 757 LDGDIYFVSWDPSLIPP--RMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMI 814
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY 908
NAHVV AD+ + A CI LAKL + AVD PKTG +P L K+YPDFME +
Sbjct: 815 ANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDK 874
Query: 909 QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKC 968
TY+S ++G+LYR+IK + EV YDTD+ V G D+ +A K
Sbjct: 875 VTYESKGVIGKLYREIKKHTPHIKHFTREV----ARRSYDTDMIVDGYEDYITEAMALKD 930
Query: 969 SYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFE 1025
YD +L L+ Y + + I M K ++K RL + + RKE R F
Sbjct: 931 EYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRL--AVRSLRKEARSRFS 988
Query: 1026 KMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIAND 1085
+M+ D + + E KASAWY VTYH E+ +G R +SF W +
Sbjct: 989 EMSLD---DNGHGHDASEAKASAWYHVTYHPEF----WGCYNEGYERP-HFISFPWCIYE 1040
Query: 1086 YLARIK 1091
L RIK
Sbjct: 1041 KLLRIK 1046
>gi|147853646|emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 265/672 (39%), Positives = 385/672 (57%), Gaps = 70/672 (10%)
Query: 488 FFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIK- 545
F S+ G T+ +I++WMG+F+ +N+AKYAAR+G FSS+ T+++ E+++ +PDI+
Sbjct: 2 FASRPGLTAA-EIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIEN-IPDIEI 59
Query: 546 ---RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
R YVFSDGIGKI+P LA VA S P SA+QIRY GYKGVVA P
Sbjct: 60 HKXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTP-SAFQIRYGGYKGVVAVDPTSSR-- 116
Query: 603 RMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL 662
++SLR SM K++S +T+L++ +W+++QP FLNRQ+ITLLSTL V D +F Q + +L
Sbjct: 117 KLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQL 176
Query: 663 NLML---VASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGELKECQ 718
+ +L VA+ A E++ S E N ML G+KP EP L ML T+ +L E +
Sbjct: 177 DTILKDPVAAQEALELM--SPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELR 234
Query: 719 CFIQV---SESSLENCF---------------SKHGSR--FAETKKLQ---------VIN 749
++ + S+ C S G R F ++ + ++
Sbjct: 235 TKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILE 294
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
G +V+AKNPCL PGDVR+L AV+ P LHH+ DC+VFPQKG RPH NE SGSDLDGD+Y+V
Sbjct: 295 GKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 354
Query: 810 TWDENLIPPSKKSCPPMECTPAEAKPL----TCHVNHQNLGQICNAHVVHADRSEYGAFD 865
WD +LIPP + + PM+ TPA K + T ++ + +LG I NAH V AD+ A+
Sbjct: 355 CWDRDLIPPQQIN--PMDYTPAPTKEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYC 412
Query: 866 ENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK 925
+ C LAKL + AVD PKTG +P +L+ K+YPDFME + TY+S ++G+L+R++K
Sbjct: 413 DPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVK 472
Query: 926 GAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNR 985
N ++ S + YD D+EV G D+ +DA K YD +L L+ Y +
Sbjct: 473 DIAPHNCNIRS-FTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKT 531
Query: 986 KE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLY 1042
+ I M K R++ E + + + RKE R F KM S+ +D+E + +Y
Sbjct: 532 ESEILSGSIMRMSKSFDRRKD--AEAIGLAVKSLRKEARTWFNKMGSE---TDSEADDVY 586
Query: 1043 EQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGK 1102
KASAWY VTYH ++ +G R LSF W D L I K ++M+ G+
Sbjct: 587 -AKASAWYHVTYHPDY----WGCYNEGMDRD-HFLSFPWCVYDKL--IHTKRKKMS--GR 636
Query: 1103 SKPVNNLARYVA 1114
S +++L R ++
Sbjct: 637 SLHLSSLERRLS 648
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2; AltName:
Full=Protein SILENCING MOVEMENT DEFICIENT 1; AltName:
Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 318/965 (32%), Positives = 457/965 (47%), Gaps = 158/965 (16%)
Query: 227 YRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCN------SKQRVQEDCLSQPVT 280
YR K+D FD + WIRTTDFS S +IG D S
Sbjct: 208 YRFCKED------FDFM-----WIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPY 256
Query: 281 IREEPDFEVPVEDPFFCMHYK---------EGVSF--EIMFLVNAVMHKGILNQHQLSD- 328
RE+ V+ F + G+ F EI+F +NA++H ++ SD
Sbjct: 257 YREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAASDM 316
Query: 329 SFFDLLRCQPREVIVTALKHIYSYKR----PVFDAYEKLKDVQECLIKNPKLNEGPKNID 384
+LR E + LK ++ PVF +++ V + + +P
Sbjct: 317 ELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQ 376
Query: 385 DIAEVRRLVITPTKAYWF---LES-----KDVADR---FLRVTFMDEGLQTMNANVLS-- 431
+I +R +TP+K Y LE+ K+ A+ F+RVTF++E + AN LS
Sbjct: 377 NIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVN 436
Query: 432 ----YYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
Y+V P +T ++ RV SIL +G + +R+ FLAFS++QLR +S W
Sbjct: 437 SKEGYFVKP-----------SRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVW 485
Query: 488 FFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKR 546
F+ + DI+ WMG F ++I+K AARMG FS++ T+ + +V+ ++PDI+
Sbjct: 486 MFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE-QIPDIEV 544
Query: 547 N----GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
Y FSDGIGKI+ A +VAQ K S PSA+QIRY GYKGV+A +
Sbjct: 545 TTDGADYCFSDGIGKISLAFAKQVAQ--KCGLSHVPSAFQIRYGGYKGVIAV--DRSSFR 600
Query: 603 RMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL 662
++SLR SM KF S + L + WT P FLNR+II LLSTL + D +F +QA S L
Sbjct: 601 KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 660
Query: 663 NLMLVASDVAFEVLTASCAEQG-NTAAIMLSAGFKPQTEPHLQGMLTY------------ 709
ML D A VL E N ML G+ P +EP+L ML
Sbjct: 661 GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 720
Query: 710 ----------------ELGELKECQCFIQVSESSLENCFSKHGSRFAET-KKLQVINGFV 752
E+G L+ Q +++V+ + E S+ S F + ++ V+ G V
Sbjct: 721 CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAE-LKSRDQSYFRKIDEETSVVIGKV 779
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHH----LCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
V+ KNPCL PGD+R+L+A+ E+H DC++FPQKG+RPH NE SG DLDGD ++
Sbjct: 780 VVTKNPCLHPGDIRVLDAI--YEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFF 837
Query: 809 VTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-------------NLGQICNAHVVH 855
V+WDE +IP PPM+ + + + V + LG I AH+VH
Sbjct: 838 VSWDEKIIPSEMD--PPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVH 895
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
ADR A + C+ LA L + AVD KTG MP LKP+++PDF+E E TY S
Sbjct: 896 ADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISES 955
Query: 916 ILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLN 975
+ G+LYR +K + + + D + YD LE G F A+ + Y +L
Sbjct: 956 VFGKLYRAVKSSLAQRKPEAESEDT----VAYDVTLEEAGFESFIETAKAHRDMYGEKLT 1011
Query: 976 GLLGQYNVNRKE--FRHIWSMPKY----NSRKQGELQERLKHSYSAFRKEFRQVFEKMNS 1029
L+ Y +E I + ++R+ G++++R+ S KE FEK
Sbjct: 1012 SLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCE 1071
Query: 1030 DFELSDNEKNVLYEQKASAWYQVTY---HREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
D + +K L ASAWY VTY HR+ + LSF WI D
Sbjct: 1072 D----EQQKKKL----ASAWYYVTYNPNHRD--------------EKLTFLSFPWIVGDV 1109
Query: 1087 LARIK 1091
L IK
Sbjct: 1110 LLDIK 1114
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 321/983 (32%), Positives = 463/983 (47%), Gaps = 152/983 (15%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCN--- 265
A LL L P++ R + I D D D WIRTTDFS +IG
Sbjct: 180 AFLLKLKYGPKVFKRVSGPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSIGTSTCFC 239
Query: 266 ---SKQRVQEDCLSQPVTIREEPDFEVPVEDPFFCMHYK---------EGVSF--EIMFL 311
D S REE V+ F + G+ F EI+F
Sbjct: 240 LEVHNGSTMLDVFSGLPYYREETLSLTFVDGKNFASVSQIVPLLNAAILGLEFPYEILFQ 299
Query: 312 VNAVMHKGILNQHQLSD-SFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECL 370
+NA++H ++ S+ ++ R E + LK ++ +D +K + +
Sbjct: 300 LNALVHAQKISLFAASNMELINIFRGLSLETTLVILKKLHQQSSICYDPLFFVKTQMQSV 359
Query: 371 IKNPKLNEGPKNI------DDIAEVRRLVITPTKAYWF---LES-----KDVADR---FL 413
+K K+ P + +I +R +TP+K Y LE+ K+ A+ F+
Sbjct: 360 VK--KMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFM 417
Query: 414 RVTFMDEGLQTMNANVLS------YYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
RVTF++E + AN L+ Y+V P +T ++ RV SIL +G +
Sbjct: 418 RVTFVEEDWSKLPANALTVNSKEGYFVKPF-----------RTNIYNRVLSILGEGITVG 466
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSST 526
+R+ FLAFS++QLR +S W F+ + DI+ WMG F ++I+K AARMG FS++
Sbjct: 467 PKRFEFLAFSASQLRGNSVWMFASNEKIKAEDIREWMGCFRKIRSISKCAARMGQLFSAS 526
Query: 527 HATVEIPPTEVDHELPDIKRNG----YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
T+ + +V+ ++PDI+ Y FSDGIGKI+ A +VAQ K S PSA+Q
Sbjct: 527 RQTLNVRAQDVE-QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQ--KCGLSHVPSAFQ 583
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
IRY GYKGV+A + +MSLR SM KF S + L + WT P FLNR+II LLS
Sbjct: 584 IRYGGYKGVIAV--DRSSFRKMSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLS 641
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQG-NTAAIMLSAGFKPQTEP 701
TL + D +F +QA S L ML D A VL E N ML G+ P +EP
Sbjct: 642 TLGIEDAVFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEP 701
Query: 702 HLQGMLTY----------------------------ELGELKECQCFIQVSESSLENCFS 733
+L ML E+G L+ Q F++V+ + E S
Sbjct: 702 YLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVFVRVTLTKAE-LKS 760
Query: 734 KHGSRFAET-KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH--LCDCLVFPQKGD 790
+ S F + ++ V+ G VV+ KNPCL PGD+R+L+A+ DC++FPQKG+
Sbjct: 761 REQSYFHKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVNFEEKGFLDCIIFPQKGE 820
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ------- 843
RPH NE SG DLDGD ++V+WDE LIP PPM+ + + + V +
Sbjct: 821 RPHPNECSGGDLDGDQFFVSWDEKLIPSQMD--PPMDYAGSRPRIMDHDVTLEEIHKFFV 878
Query: 844 ------NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
LG I AH+VHADR A + C+ LA L + AVD KTG MP LKP+
Sbjct: 879 DYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPR 938
Query: 898 KYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSV 957
++PDF+E E TY S + G+LYR ++ + + +E D + YD LE G
Sbjct: 939 EFPDFLERFEKPTYISESVFGKLYRAVRSSLAQR-KPEAESDGT---LTYDATLEEAGFE 994
Query: 958 DFTADARNQKCSYDGQLNGLLGQYN-VNRKEFRH--IWSMPKY---NSRKQGELQERLKH 1011
F A+ + Y +L L+ Y VN +E + + Y ++R+ G++++R+
Sbjct: 995 SFIETAKAHRDMYAEKLTSLMIYYGAVNEEEILTGILKTKEMYLARDNRRYGDMKDRITL 1054
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTY---HREWVKKSLDLLEQ 1068
S KE F+K D + +K L ASAWY VTY HR+
Sbjct: 1055 SVKDLHKEAMGWFDKSCED----EQQKKKL----ASAWYYVTYNPSHRD----------- 1095
Query: 1069 GSARSVVLLSFAWIANDYLARIK 1091
+ LSF WI D L IK
Sbjct: 1096 ---EKLTFLSFPWIVGDVLLDIK 1115
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 312/980 (31%), Positives = 476/980 (48%), Gaps = 147/980 (15%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNSKQ 268
A+LL L +P+I + A +I D D + W+RTTDFS ++GQ S
Sbjct: 174 ALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSF- 232
Query: 269 RVQEDCLSQPVTIREE-PDFEVPVEDPFF------CMHYKEG------------------ 303
C I+E P ++ P++ + EG
Sbjct: 233 -----CWE----IKEGFPALDIFASFPYYKDLTELTLEQGEGFCSDSGLVPLVKCESGPK 283
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+++EI+F +N+++H ++ + ++L P + + L+ ++ K +D +
Sbjct: 284 LAYEILFQLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFI 343
Query: 364 KDVQECL---IKN-PKLNEGPKNIDDIAEVRRLVITPTKAYWF---LESKDV-------- 408
K + IKN P + +++ R+++TP+K Y LES +
Sbjct: 344 KAQAHIINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAY 403
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
A F+RV+F++E + +N LS I K ++ F +T ++ R+ SIL +G +
Sbjct: 404 ASDFVRVSFVEEDWSKLPSNALS---MSIRKAFFADPF--RTEIYHRILSILREGIVIGA 458
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTH 527
+R+ FLAFS++QLR +S W F+ + V DI+ WMG F ++++K AARMG FSS+
Sbjct: 459 KRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSV 518
Query: 528 ATVEIPPTEVDHELPDIKRN----GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQI 583
T+ +P +V+ +PDI+ GY FSDGIGKI+ A +VAQ L + PSA+QI
Sbjct: 519 QTLPVPVQDVE-VIPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCGLHQT--PSAFQI 575
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
RY GYKGV+A ++ ++SLR SM KF+S + L + W+ P +LNR+I++LLST
Sbjct: 576 RYGGYKGVIAV--DRNSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLST 633
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPH 702
L V DE F + L+ ML A +VL + + N A ML G++P EP+
Sbjct: 634 LGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPY 693
Query: 703 LQGML-TYELGELKE----CQCFIQVSESSLENCFSKHG--------SRFAETK------ 743
L ML Y +L + C+ F+ + L C + G R TK
Sbjct: 694 LSMMLQAYRESQLSDIRTRCRIFVPKAR-VLIGCLDETGILNYGQVYVRVTMTKAEHKCR 752
Query: 744 ----------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH--LCDCLVFPQKGDR 791
V+ G V++ KNPCL PGD+R+L+AV EL L DC++FPQKG+R
Sbjct: 753 NQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGER 812
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN---------- 841
PH NE SG DLDGD +++ WDE LIP ++ PM+ T + + V
Sbjct: 813 PHPNECSGGDLDGDQFFICWDEGLIPSQTEA--PMDYTSRRPRIMDHDVTLEEIQKFFVD 870
Query: 842 ---HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
+ LG I AH+VHADR A + C+ LA L + AVD KTG MP LKPK+
Sbjct: 871 YMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKE 930
Query: 899 YPDFMEIEEYQTYKSNKILGRLYR-QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSV 957
+PDFME + Y SN LG+LYR I +E S I YD DLEV G
Sbjct: 931 FPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIPGA--AYDHDLEVDGFE 988
Query: 958 DFTADARNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKH 1011
F A+ K Y ++ L+ Y ++ R+ + ++R+ E+++R+
Sbjct: 989 TFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRRFTEMKDRILI 1048
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSA 1071
S + +KE ++ L + K +++ ASAWY VTYH + S+
Sbjct: 1049 SVKSLQKEAKEW---------LYGSCKPHQHQKMASAWYHVTYHSTF-----------SS 1088
Query: 1072 RSVVLLSFAWIANDYLARIK 1091
++ LSF WI + L IK
Sbjct: 1089 QTPNFLSFPWIVGEVLLVIK 1108
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 307/898 (34%), Positives = 439/898 (48%), Gaps = 153/898 (17%)
Query: 246 DDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFEVP-VEDPFFCMH----- 299
DD W RTTDF+ S +IGQ CL P ++P + D FF H
Sbjct: 210 DDQWTRTTDFTSSSSIGQSYIL------CLEVPRRC------DLPNIRDYFFYYHEYNHD 257
Query: 300 ---------------------YKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQP 338
+ V +EI+F +N ++ G L+ + DSFF L+ P
Sbjct: 258 FECRSGGYPYSSDTRFVPIVKSRGYVPYEILFKINHLVQNGTLSGPTVDDSFFRLV--SP 315
Query: 339 REVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDDIAEVRRLVITPT 397
V + +K A E + +++ + GP+ N+ + VR
Sbjct: 316 AFVPIDHIKR----------ALEMMSYLKKTCLNPTMYFYGPEINVSNRV-VRNF----- 359
Query: 398 KAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVK 457
S D+ + FLR++F+DE + + A LS A S + +T ++KRV
Sbjct: 360 -------SSDI-ENFLRISFVDEDCEKLRATDLSPRSA-------SGHDANRTALYKRVL 404
Query: 458 SILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYA 516
S+LSDG + G+ + FLAFSS+QLRD+SAW F+ + DI+ WMG+F +N+AKYA
Sbjct: 405 SVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYA 464
Query: 517 ARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDG 574
AR+G FSS+ T+++ EV+ E+ DIK NG +VFSDGIGKI+ A EVA L
Sbjct: 465 ARLGQSFSSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAFANEVAMKCNLKR 522
Query: 575 SPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLN 634
PSA+QIRY GYKGVVA P ++SLR SM KF+S + ++++ +++++QPGFLN
Sbjct: 523 F-APSAFQIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLN 579
Query: 635 RQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSA 693
RQ+ITLLSTL V D +F Q ++LN M+ A E + E N +L
Sbjct: 580 RQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLC 639
Query: 694 GFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVIN 749
G++P EP+L +L +L ELK + ++ C ET+ L+
Sbjct: 640 GYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLD-------ETRTLKYGQ 692
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
F +R V+ DRPH NE SGSDLDGD+Y+V
Sbjct: 693 VF-------------IRATSGVN---------------DNDRPHPNECSGSDLDGDIYFV 724
Query: 810 TWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHA 856
+WD +LIPP + PM+ TPA + L T ++ +++LG I NAHVV A
Sbjct: 725 SWDPSLIPP--RMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFA 782
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKI 916
D+ + A CI LAKL + AVD PKTG +P L K+YPDFME + TY+S +
Sbjct: 783 DKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGV 842
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNG 976
+G+LYR+IK + EV YDTD+ V G D+ +A K YD +L
Sbjct: 843 IGKLYREIKKHTPHIKHFTREV----ARRSYDTDMIVDGYEDYITEAMALKDEYDFKLGN 898
Query: 977 LLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFEL 1033
L+ Y + + I M K ++K RL + + RKE R F +M+ D
Sbjct: 899 LMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRL--AVRSLRKEARSRFSEMSLD--- 953
Query: 1034 SDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
+ + E KASAWY VTYH E+ +G R +SF W + L RIK
Sbjct: 954 DNGHGHDASEAKASAWYHVTYHPEF----WGCYNEGYERP-HFISFPWCIYEKLLRIK 1006
>gi|260803900|ref|XP_002596827.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
gi|229282087|gb|EEN52839.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
Length = 1922
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 284/904 (31%), Positives = 439/904 (48%), Gaps = 102/904 (11%)
Query: 250 IRTTDFSPSGAIGQ--CNSKQRVQEDCLSQPVTIREEPDFEVPVEDPFFCMHYKEGVSFE 307
+ TD S G++ + + Q+V D +++ P ++ +K+ F
Sbjct: 268 VHITDSSADGSVTEDVLHRLQKVGFDVYFSSTRVKQAPQATADLKI------FKDFADFS 321
Query: 308 IMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQ 367
+ + ++ ++ +G ++ SFF L R V ++ D + D++
Sbjct: 322 VTYALHCLLSRGYKVSDRVQPSFFSNLEAAARHDPVATAAALHQVADGWVDG-DCFCDLE 380
Query: 368 ECLIKNPKL--NEGPKNIDDIAE----VRRLVITPTKAYWF-----LESKDV----ADRF 412
E ++ GP + DD+ + R++V+TPT+ + +E++ V D F
Sbjct: 381 EAFQTELEVARTTGPNDADDLPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREYGVDNF 440
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
+RV F DE + A N S K V RVK +L G + GR +
Sbjct: 441 IRVAFRDEDFNKLTA---------------PNPNSIKC-VTTRVKDVLQRGIRIGGRHFE 484
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKN-IAKYAARMGLCFSSTHATVE 531
+L S++Q+R+H W ++ ET+ DI+ WMG+ + + +A Y +R+G FSS+ V
Sbjct: 485 YLGSSNSQMREHGCWMYAAEDETTTSDIRAWMGDLSHERCVATYVSRLGQFFSSSRDAVN 544
Query: 532 IPPTEVDHELPD---IKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGY 588
+ + L D + Y FSDGIGKI+ LA +VA L + SP PSA+QIRY G
Sbjct: 545 VSVEDRSVALIDDVTSSQRRYTFSDGIGKISVPLAEKVAAALGV--SPVPSAFQIRYGGC 602
Query: 589 KGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSD 648
KGV+A P+ + +RGSMKKF+S H +LE+ S T LNRQ ITLLS L V D
Sbjct: 603 KGVLAQDPSLGHTDLIHIRGSMKKFESEHKTLEVTSVTTPGSLSLNRQAITLLSGLGVPD 662
Query: 649 EIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLT 708
E F+ +Q + ++L ML+ A + L S A G + ++ TEP + ML
Sbjct: 663 EEFFKLQERVLNQLAEMLLLDGAAVKAL--SGARVGINFQALHNSRISLTTEPFFRSMLL 720
Query: 709 Y----ELGEL-KECQCFIQVSESSL------ENCFSKHGSRF----AETKKLQ----VIN 749
++GEL + + + E + E ++G F ET + Q V
Sbjct: 721 AVYRNQMGELLRRTRIQLPAGEGRIMMGTMDETGKLQYGQVFLQYSRETDRPQAEKIVHQ 780
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
G V + KNPC PGD+R AVD PEL H+ DC+VFP +G RPH +E SGSDLDGD+Y+V
Sbjct: 781 GQVTVTKNPCFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFV 840
Query: 810 TWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHA 856
TW E LI P +++ P M+ T K L ++ + LG I NAH+VHA
Sbjct: 841 TWREGLILP-RENIPAMDFTAQPKKVLRRPVQVSDMIEFFAEYIRNDQLGLIANAHLVHA 899
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKI 916
D+ G F E C+ LAKL + AVD PKTG+ + L+P KYPDFM + Y+S KI
Sbjct: 900 DKETKGIFSERCMELAKLHSDAVDFPKTGQCPELKGDLRPDKYPDFMMKSDKPQYRSEKI 959
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPV--DIHYDTDLEVPGSVDFTADARNQKCSYDGQL 974
+G+L+RQ + + + +PV D D DL G +T DA+ Q Y+ ++
Sbjct: 960 IGKLFRQCQA-----LDNAQRFSPDPVVEDDGVDQDLIREGFESYTDDAQTQLNIYNTKI 1014
Query: 975 NGLLGQYNVNRKEFRHIWSMPKYNSR------KQGELQERLKHSY-SAFRKEFRQVFEKM 1027
++ Y ++ + + K R ++ E+ E ++ + + +RK + F +
Sbjct: 1015 RSIMSLYGISSEGEVVSGCILKVKQRLGLLKNERFEVTEYVRARFKTLWRKTRAEFFRQF 1074
Query: 1028 NSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYL 1087
+ E S + + +KASAWY VTY ++ K S LLSF W+ D L
Sbjct: 1075 DEKEESSTDRRREEQLKKASAWYMVTYSDDYNNKP-------HGASPKLLSFPWVVYDVL 1127
Query: 1088 ARIK 1091
+K
Sbjct: 1128 GGLK 1131
>gi|147860348|emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 369 bits (947), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 258/677 (38%), Positives = 352/677 (51%), Gaps = 79/677 (11%)
Query: 488 FFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPP-TEVDHELPDIK 545
F S+ G T+ DI++ MG+F+ +N+AKYAAR+G FSS+ T+++ +I
Sbjct: 2 FASRPGLTAA-DIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIH 60
Query: 546 RNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR 603
R+G YVFSDGIGKI+ +LA VA S P SA+QIRY GYKGVVA P +
Sbjct: 61 RDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTP-SAFQIRYGGYKGVVAVDPTSSR--K 117
Query: 604 MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
+SLR SM K++S +T+L++ SW++++P FLNRQ+ITLLSTL V D +F Q +L+
Sbjct: 118 LSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLD 177
Query: 664 LMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGELKEC---- 717
+L A E L S E N ML G+KP EP L ML T+ +L E
Sbjct: 178 TILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 237
Query: 718 -----------------------QCFIQVSESSLENCFSKHGSRFAETKKLQ--VINGFV 752
+ F+Q+S + F + ++ G V
Sbjct: 238 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKV 297
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
V+AKNPCL PGDVRIL AVD P LHH+ DC+VFPQKG RPH +E SGSDLDGD+Y+V WD
Sbjct: 298 VVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWD 357
Query: 813 ENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRS 859
+LIPP + PM+ TPA K L T ++ + LG I NAH V AD+
Sbjct: 358 HDLIPP--RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKE 415
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGR 919
A C LAKL + A++ PKTG +P HL K+YPDFME TY+S ++G+
Sbjct: 416 YDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGK 475
Query: 920 LYRQIKGAYDENISVSS---EVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNG 976
L+R++K N + S +V + YD D+EV G D+ DA K YD +L
Sbjct: 476 LFREVKDVAPHNYDIRSFTRDVAMQS----YDADMEVDGFEDYVRDAFYYKSQYDFKLGS 531
Query: 977 LLGQYNVNRKEFRHIWSMPK----YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFE 1032
L+ Y + + S+ K ++ RK E + + + RKE R F KM S
Sbjct: 532 LMDCYGIRTESEILSGSLMKMSKSFDKRKDAEA---IALAVRSLRKEARTWFNKMGSGTY 588
Query: 1033 LSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKI 1092
++ + ASAWY VTYH + +G LSF W D L I+I
Sbjct: 589 AGADDVYAI----ASAWYHVTYHPYY----WGCYNEGMYHD-HFLSFPWCVYDKL--IQI 637
Query: 1093 KCQEMANIGKSKPVNNL 1109
K +M+ KP +NL
Sbjct: 638 KRDKMSISHFQKPEDNL 654
>gi|255635133|gb|ACU17923.1| unknown [Glycine max]
Length = 290
Score = 365 bits (938), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 188/289 (65%), Positives = 221/289 (76%), Gaps = 14/289 (4%)
Query: 842 HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPD 901
+++LG ICNAHVVHAD S+YGA DE CI LA+LAATAVD PKTGK+VTMP HLKPK YPD
Sbjct: 3 NEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPD 62
Query: 902 FMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTA 961
FM E +Q+Y+S KILGRLYR+IK AYDE+I + ++ I YD DLEVPGS DF A
Sbjct: 63 FMGKERHQSYRSKKILGRLYRRIKDAYDEDID-APYLNFVTGGIPYDKDLEVPGSADFIA 121
Query: 962 DARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRK 1018
DA QKCSYDGQL+GLLGQY V R+E IWSMPKYNSRKQGEL+ERLKHSYSA +K
Sbjct: 122 DAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKK 181
Query: 1019 EFRQVFEKMNSDF-ELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSAR----- 1072
EFR FEK+NSD ELS+ EKN+ YEQKASAWYQVTYH EWVKKSLDL ++ S
Sbjct: 182 EFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADS 241
Query: 1073 --SVVLLSFAWIANDYLARIKI--KCQEMANIGKSKPVNNLARYVADRI 1117
S V+LSF WIA DYLAR KI + Q N +KPV++LA+Y+++R+
Sbjct: 242 LGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDSTKPVDSLAKYLSERL 290
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 365 bits (937), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 256/732 (34%), Positives = 382/732 (52%), Gaps = 116/732 (15%)
Query: 215 ILLWLASSPRI-------CYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS- 266
+L+ L +PRI CY K+ DD W+RTTDF+PS IG +S
Sbjct: 166 LLIQLFGAPRIYKRLENSCYSFFKET-----------PDDQWVRTTDFTPSW-IGLSSSL 213
Query: 267 ----KQRVQEDCLSQPVTIREEPDFEVPVEDPF-FCMHYK----------EGVS--FEIM 309
++ V + E + + ++ F F + K EG++ ++I+
Sbjct: 214 CLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKIL 273
Query: 310 FLVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQ 367
F +++++ G + L+ FF L+ Q R V I AL+ +Y K +D L +
Sbjct: 274 FKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQY 333
Query: 368 ECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLR 414
+ K + + P +DD + VRR+++TP K Y+ +V++R FLR
Sbjct: 334 DGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLR 393
Query: 415 VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFL 474
V+F+DE + + Y + K T N +T +++R+ S L GF + +++ FL
Sbjct: 394 VSFVDEEWEKL------YSTELLPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFL 445
Query: 475 AFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIP 533
AFSS+QLRD+S W F+ + DI++WMG+F+ KN+AKYAAR G F S+ T+ +
Sbjct: 446 AFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVL 505
Query: 534 PTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
E++ +PD+K +G YVFSDGIGKI+ D A +VA L +P SA+QIRY GYKGV
Sbjct: 506 RHEIE-VIPDVKVHGTSYVFSDGIGKISADFARKVASNCGLQYTP--SAFQIRYGGYKGV 562
Query: 592 VACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIF 651
VA P +++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL V D++
Sbjct: 563 VAVDPY--SSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVL 620
Query: 652 WTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TY 709
Q +L+ +L S A E L S E N ML+ G+ P EP L ML T+
Sbjct: 621 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 680
Query: 710 ELGELKEC---------------------------QCFIQVSESSLENCFSKHGSRFAET 742
+L + Q F+Q + + FS+ F +
Sbjct: 681 RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHRE-FSEDLHPFNNS 739
Query: 743 KKLQ---VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASG 799
+ ++ G VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG RPH NE SG
Sbjct: 740 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 799
Query: 800 SDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLG 846
SDLDGD+Y+V WD+++IPP + ME P + L T ++ + LG
Sbjct: 800 SDLDGDIYFVCWDQDMIPP--RQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGLG 857
Query: 847 QICNAHVVHADR 858
I NAHVV ADR
Sbjct: 858 IIANAHVVFADR 869
>gi|260789117|ref|XP_002589594.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
gi|229274774|gb|EEN45605.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
Length = 1867
Score = 363 bits (932), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 265/767 (34%), Positives = 385/767 (50%), Gaps = 94/767 (12%)
Query: 384 DDIAEVRRLVITPTKAYWF-----LESKDV----ADRFLRVTFMDEG---LQTMNANVLS 431
D R++V+TPT+ + +E++ V D F+RV F DE L N N
Sbjct: 381 DHYVYARKVVVTPTQMLFLKPEPIVENRVVREYGVDNFIRVAFRDEDFSKLAVTNPNS-- 438
Query: 432 YYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK 491
++ +TS RVK +L G + R + +L S++Q+R+H W ++
Sbjct: 439 ------IRCVTS-----------RVKDVLEKGIRIGERNFKYLGSSNSQMREHGCWMYAA 481
Query: 492 VGET--SVLDIKNWMGEFTAKN-IAKYAARMGLCFSSTHATVEIPPTEVDHEL-PDIKRN 547
+T S DI+ WMG+ + + +A Y +R+G FSS+ V + + EL D++ +
Sbjct: 482 ADKTTTSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSWNAVSVSVEDRSVELIADVETS 541
Query: 548 G--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMS 605
+ FSDGIGKI+ LA +VA L + SP PSA+QIRYAG KGV+A P + R+
Sbjct: 542 SGTHTFSDGIGKISVPLAKKVAAALGV--SPVPSAFQIRYAGCKGVLAQDPTLGNTDRIQ 599
Query: 606 LRGSMKKFKSCHTSLEICSWTRFQPGFL--NRQIITLLSTLNVSDEIFWTVQASMASKLN 663
+RGSMKKF+S H +LE+ S T PG L NRQ ITLLS LNV D F +Q + ++L
Sbjct: 600 IRGSMKKFESEHKTLEVTSVT--TPGVLSLNRQAITLLSGLNVPDMEFLKLQERVLNQLA 657
Query: 664 LMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY----ELGEL-KECQ 718
ML+ + A + L S A G + +G TEP + ML +GEL + +
Sbjct: 658 EMLILDEAAVKAL--SGARVGMDIRALHDSGISLTTEPFFRSMLLAVYRNRMGELLRRTR 715
Query: 719 CFIQVSESSL------ENCFSKHGSRFA----ETKKLQ----VINGFVVIAKNPCLRPGD 764
I E + E ++G F E K Q V G V + KNPC PGD
Sbjct: 716 IEIPAGEGRIMMGTMDETGKLQYGQVFIQYSREVDKPQADKVVHQGQVTVTKNPCFHPGD 775
Query: 765 VRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+R AVD PEL H+ DC+VFP +G RPH +E SGSDLDGD+Y+VTW E LI P +++ P
Sbjct: 776 MRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILP-RENRP 834
Query: 825 PMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILL 871
M+ T + L ++ LG I NAH+VHAD+ + G F + CI L
Sbjct: 835 AMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHADKEDQGIFSQKCIDL 894
Query: 872 AKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDEN 931
A+L + AVD+PKTG+ + L+P+ YPDFM + Y+S +I+GRL+R+ + D
Sbjct: 895 AQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKCQ-ELDSA 953
Query: 932 ISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHI 991
S DI D DL G + DA+ Q Y+ + ++ Y + +
Sbjct: 954 NQRSGTDDIVYHTSGIDHDLVREGFDSYIEDAQTQLNIYNNMMMSIMSLYGITSEGEVVS 1013
Query: 992 WSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDF-------ELSDNEKNVLYEQ 1044
+ K R G L+ R F+ ++ K ++F ELS+ + +
Sbjct: 1014 GCILKVKQR-LGLLKNERFEVTEYVRARFKTLWRKTRAEFFKQFDVEELSEERRKEEQLK 1072
Query: 1045 KASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
+ASAWY VTY + +K D S LLSF W+ D LA +K
Sbjct: 1073 RASAWYMVTYSDAYDEKPHD-------PSPKLLSFPWVVYDVLASLK 1112
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 363 bits (931), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 266/770 (34%), Positives = 393/770 (51%), Gaps = 107/770 (13%)
Query: 161 VDPFDG-TCKF-CFTKDTAFALKSSAEHAVIKCEFKVFLVREIDIVKQYSELPRVAILLW 218
VD DG T F C D FA+ S E V L R Q+ +L+
Sbjct: 92 VDHMDGITLNFGCQISDDKFAVLGSTE---------VVLHRPYGQNAQF-------LLIQ 135
Query: 219 LASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS-----KQRVQED 273
L +PRI R F DD W+RTTDF+PS IG +S ++ V
Sbjct: 136 LFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRRGVHLP 190
Query: 274 CLSQPVTIREEPDFEVPVEDPF-FCMHYK----------EGVS--FEIMFLVNAVMHKGI 320
+ E + + ++ F F + K EG++ ++I+F +++++ G
Sbjct: 191 NFQEIFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGC 250
Query: 321 LNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNE 378
+ L FF L+ Q R V I AL+ +Y K +D L + + +K + +
Sbjct: 251 IPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPK 310
Query: 379 GPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTM 425
P +DD + VRR+++TP K Y+ +V++R FLRV+F+DE + +
Sbjct: 311 SPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKL 370
Query: 426 NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHS 485
+ L + K T N +T +++R+ S L GF + +++ FLAFSS+QLRD+S
Sbjct: 371 YSTDL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 422
Query: 486 AWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI 544
W F+ + DI+ WMG+F+ KN+AKYAAR+G F S+ T+ + E++ +PD+
Sbjct: 423 VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE-VIPDV 481
Query: 545 KRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
K +G YVFSDGIGKI+ D A VA L +P SA+QIRY GYKGVVA P +
Sbjct: 482 KVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKGVVAVDPYS--SM 537
Query: 603 RMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL 662
++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL V D++ Q +L
Sbjct: 538 KLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQL 597
Query: 663 NLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TYELGELKEC--- 717
+ +L S A E L S E N ML+ G+ P EP L ML T+ +L +
Sbjct: 598 DAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTR 657
Query: 718 ------------------------QCFIQVSESSLENCFSKHGSRFAETKKLQ---VING 750
Q F+Q + + FS+ F ++ ++ G
Sbjct: 658 SRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHRE-FSEDLHPFNNSRSTNCNFILKG 716
Query: 751 FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVT 810
VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG RPH NE SGSDLDGD+Y+V
Sbjct: 717 NVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVC 776
Query: 811 WDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSE 860
WD+++IPP + PME PA + L V + G + + H RS
Sbjct: 777 WDQDMIPP--RQVQPMEYPPAPSIQLDHDVTIEGCGGVVSTHSSLTKRSR 824
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 142/279 (50%), Gaps = 28/279 (10%)
Query: 836 LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
T ++ + +LG I NAHVV ADR A + C LA+L + AVD PKTG +PS L+
Sbjct: 913 FTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLR 972
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI---HYDTDLE 952
PK+YPDFM+ + TY S +++G+L+R++K + +S + I D+ YD DLE
Sbjct: 973 PKEYPDFMDKPDKTTYISERVIGKLFRKVK----DKAPQASSIAIFTRDVARRSYDADLE 1028
Query: 953 VPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKH 1011
V G D+ +A + K YD +L L+ Y + + E M + + + E +
Sbjct: 1029 VDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISV 1088
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSA 1071
+ A RKE R F++ N ++ D KASAWY VTYH + QG
Sbjct: 1089 AVRALRKEARTWFKRRN---DIDD------MLPKASAWYHVTYHPTY----WGCYNQGLK 1135
Query: 1072 RSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLA 1110
R +SF W D L I+IK ++ N +PV NL+
Sbjct: 1136 RD-HFISFPWCVYDQL--IQIKKEKALN----RPVLNLS 1167
>gi|384245028|gb|EIE18524.1| RdRP-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 723
Score = 360 bits (923), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 259/737 (35%), Positives = 376/737 (51%), Gaps = 89/737 (12%)
Query: 406 KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
+ +DRFLRVTF +E N L + +N + R++ IL DG
Sbjct: 13 RQYSDRFLRVTFCEE-----NGGRLCF----------ANDIPRLEDYMDRMEGILKDGLE 57
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSK--VGETSVLDIKNWMGEFTA-KNIAKYAARMGLC 522
L R + LAFSS Q+R+ SAWF++ G T+ DI+ WMG+F A + +AK+ ARMG C
Sbjct: 58 LADRHFDLLAFSSGQVREQSAWFWAAPDSGPTAA-DIRAWMGDFDAIRCVAKFTARMGQC 116
Query: 523 FSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP----P 578
FSST T+++ V +PD++RNGY FSDG+G+I+ +L+ VA L+ G P P
Sbjct: 117 FSSTVDTLKLQAYTV-QTVPDVERNGYCFSDGVGRISVELSRAVADRLEQLGRCPAGWLP 175
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
AYQIRYAG KG+V+ G R +R SM KF++ LEIC + R+ PG+LNRQI+
Sbjct: 176 RAYQIRYAGCKGMVSLHMGLR-GKRFEVRPSMNKFEASAQMLEICDYARYVPGYLNRQIV 234
Query: 639 TLL--STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSA--- 693
TLL L V + +F +QA A L + + + G+ AAIML A
Sbjct: 235 TLLMQKCLGVPNSVFQRLQARTA----LFNLNKSGQLRCFCLNLIKWGD-AAIMLEAAHI 289
Query: 694 ---GFKPQTEPHLQGML----TYELGELKECQCFIQVSESSL------ENCFSKHGSRFA 740
GF TEP+L+ +L + L +LK + ++V +++L E + G F
Sbjct: 290 IRAGFDVGTEPYLKSILLCLRAHLLQDLK-AKTRVRVPKAALLMGVMDEEGVLEPGQVFL 348
Query: 741 ETKKL------QVINGFVVIAKNPCLRPGDVRILEA---VDRPELHHLCDCLVFPQKGDR 791
L ++ G VV+AKNPC PGDVR +A PELHHL +CLVFPQKG R
Sbjct: 349 SVNSLPTMALPAIVTGTVVVAKNPCFHPGDVRKFQARPLFRSPELHHLVNCLVFPQKGQR 408
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP-------PMECTPAEAKPL-------T 837
PH +E SGSDLDGD Y+V+W+ L+ P P P+ +A +
Sbjct: 409 PHPDECSGSDLDGDQYFVSWEPGLLFPGPNREPMSFHSQDPVLIPEGQASLVGDVAQFFM 468
Query: 838 CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
++ + LG I NAH+ AD GA C+ LA+L + AVD K+G+ L+P
Sbjct: 469 DYIFNDLLGIIANAHLATADIKPDGAQCSQCLQLARLHSNAVDFTKSGRPAEFSRDLRPL 528
Query: 898 KYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENIS-VSSEVDINPVDIHYDTDLEVPGS 956
YPDFM + +T++S+ I+G+L+R I +S ++SE +P D+ V G
Sbjct: 529 SYPDFMMKKNKETHESSTIIGQLFRAITVPTPPLLSDIASETQPDP-------DIMVEGF 581
Query: 957 VDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKY--NSRKQGELQERLKHSYS 1014
F A+ + Y+ L ++ QY V+ + + K+ + RK+G+++ + +
Sbjct: 582 QQFIPAAQEARTRYEHALVQIMNQYGVHNEAEIVSGCISKFAKHRRKKGDVKTMIIDAVR 641
Query: 1015 AFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSV 1074
A RK+ R F L+ + L QKA AWY VTY +
Sbjct: 642 ALRKKNRAEFPG-----PLAARSRRAL--QKACAWYHVTYSPAYSGYGPAAALSTRELDA 694
Query: 1075 VLLSFAWIANDYLARIK 1091
L+SF WI D+LA IK
Sbjct: 695 RLISFPWILTDHLAVIK 711
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 246/697 (35%), Positives = 370/697 (53%), Gaps = 103/697 (14%)
Query: 215 ILLWLASSPRI-------CYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNS- 266
+L+ L +PRI CY K+ DD W+RTTDF+PS IG +S
Sbjct: 166 LLIQLFGAPRIYKRLENSCYSFFKET-----------PDDQWVRTTDFAPS-WIGLSSSL 213
Query: 267 ----KQRVQEDCLSQPVTIREEPDFEVPVEDPF-FCMHYK----------EGVS--FEIM 309
++ V + E + + ++ F F + K EG++ ++I+
Sbjct: 214 CLQFRRGVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKIL 273
Query: 310 FLVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQ 367
F +++++ G + L+ FF L+ Q R V I AL+ +Y K +D L +
Sbjct: 274 FKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQY 333
Query: 368 ECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLR 414
+ +K + + P +DD + VRR+++TP K Y+ +V++R FLR
Sbjct: 334 DGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLR 393
Query: 415 VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFL 474
V+F+DE + + + L + K T N +T +++R+ S L GF + +++ FL
Sbjct: 394 VSFVDEEWEKLYSTDL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFL 445
Query: 475 AFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIP 533
AFSS+QLRD+S W F+ + DI+ WMG+F+ KN+AKYAAR+G F S+ T+ +
Sbjct: 446 AFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVL 505
Query: 534 PTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
E++ +PD+K +G YVFSDGIGKI+ D A VA L +P SA+QIRY GYKGV
Sbjct: 506 RHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKGV 562
Query: 592 VACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIF 651
VA P +++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL V D++
Sbjct: 563 VAVDPYSS--MKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVL 620
Query: 652 WTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML-TY 709
Q +L+ +L S A E L S E N ML+ G+ P EP L ML T+
Sbjct: 621 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 680
Query: 710 ELGELKEC---------------------------QCFIQVSESSLENCFSKHGSRFAET 742
+L + Q F+Q + + FS+ F +
Sbjct: 681 RASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHRE-FSEDLHPFNNS 739
Query: 743 KKLQ---VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASG 799
+ ++ G VV+AKNPCL PGD+R+L AVD P LHH+ DC+VFPQKG RPH NE SG
Sbjct: 740 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 799
Query: 800 SDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
SDLDGD+Y+V WD+++IPP + PME PA + L
Sbjct: 800 SDLDGDIYFVCWDQDMIPP--RQVQPMEYPPAPSIQL 834
>gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 513
Score = 355 bits (910), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 209/525 (39%), Positives = 299/525 (56%), Gaps = 55/525 (10%)
Query: 500 IKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIK----RNGYVFSDG 554
I+ WMG+F +N+AKYAAR+G FSS+ T+ + E++ +PD++ YVFSDG
Sbjct: 1 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDG 59
Query: 555 IGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
IGKI+ + A +VA+ L P SA+QIRY GYKGVVA P + ++SLR SM KF+
Sbjct: 60 IGKISAEFARKVARKCGLTEFSP-SAFQIRYGGYKGVVAVDP--NSSKKLSLRKSMSKFE 116
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
S +T L++ +W+++QP ++NRQ+ITLLSTL V+D +F Q + +L+ +L A E
Sbjct: 117 SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 176
Query: 675 VL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLE 729
L + E N ++ G+KP EP L ML +L EL+ S+
Sbjct: 177 ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 236
Query: 730 NCFS------------------KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
C + G RF +I G VV+AKNPCL GDVR+L+AV
Sbjct: 237 GCLDETRTLEYGQVVVQYSDPMRPGRRF-------IITGPVVVAKNPCLHSGDVRVLQAV 289
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPA 831
+ P L+H+ DC+VFPQKG RPH NE SGSDLDGD+Y+V WD+ L+PP ++ PM+ TP
Sbjct: 290 NVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPE 347
Query: 832 EAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATA 878
+ L ++ + +LG I NAH AD+ AF + CI LAK +TA
Sbjct: 348 PTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTA 407
Query: 879 VDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEV 938
VD PKTG +P HL K+YPDFME + TY+S ++G+L+R++K IS+ S
Sbjct: 408 VDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS-F 466
Query: 939 DINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV 983
++ YD D+EV G ++ +A QK +YD +L L+ Y +
Sbjct: 467 TLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGI 511
>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 353 bits (905), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 295/956 (30%), Positives = 451/956 (47%), Gaps = 182/956 (19%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNSKQRVQEDC 274
+LL L +PRI ++ +D F DD W+RTTDF+PS IG +S C
Sbjct: 166 LLLQLFGAPRI-HKRLEDSCN---SFFKETPDDQWVRTTDFTPSW-IGLSSSL------C 214
Query: 275 LSQPVTIREEPDFE----------------------------VPVEDPFFCMHYKEGVS- 305
L +R P+F VP+ +H EGV
Sbjct: 215 LEFHNGVRL-PNFSGSFFYYKESGPSYFTDWFTFSFVQKLSLVPI------VHLPEGVEL 267
Query: 306 -FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEK 362
++I+F +++++ G L+ +FF L+ + R + I AL+ +Y K +D
Sbjct: 268 PYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRW 327
Query: 363 LKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR--------- 411
L + + +K+ +L + P +DD + VRR+++TP K Y+ +V++R
Sbjct: 328 LTEQYDEYLKHRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDI 387
Query: 412 --FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
FLRV+F+DE + +++ L + + T N +T ++ R+ S L +GF + +
Sbjct: 388 DNFLRVSFVDEEWEKIHSTDL------LPRASTGNGI--RTDIYLRILSTLRNGFVIGDK 439
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHA 528
++ FLAFSS+QLRD+S W F+ + DI+ WMG+F +N+AKYAAR+G F S+
Sbjct: 440 KFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRE 499
Query: 529 TVEIPPTEVDHELPDI----KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
T+ + EV+ +PD+ Y+FSDGIGKI+ D A K+ S + IR
Sbjct: 500 TLSVSRHEVE-VIPDVVCSLHGTNYIFSDGIGKISADFA-------KMRPSVYSIFFSIR 551
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
Y GYKGVVA P +++SLR SM K++S + L++ W+++QP +LNRQ++TLLSTL
Sbjct: 552 YGGYKGVVAVDPY--SSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTL 609
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHL 703
V D++F Q +L+ +L S A E L S E N ML+ G+ P EP L
Sbjct: 610 GVKDDVFEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFL 669
Query: 704 QGML-TYELGELKEC-----------------------QCFIQVSESSLENCFSKHGSRF 739
ML T+ +L + Q F+Q + + F + F
Sbjct: 670 SMMLQTFRASKLLDLRTRSRIFIAKWDAWLNPEPLEYGQVFVQFTGTGRRQ-FYEESHPF 728
Query: 740 AETKKLQ---VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNE 796
++ + G VV+AKNPCL PGD+R+L AVD P LHH
Sbjct: 729 NDSGSTNCNFTLEGNVVVAKNPCLHPGDIRVLRAVDVPALHH------------------ 770
Query: 797 ASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHA 856
ME + T ++ + +LG I NAHVV A
Sbjct: 771 -----------------------------MEV----GEYFTNYIVNGSLGIIANAHVVFA 797
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKI 916
DR A C LA+L + AV PKTG +PS L+P YPDFME + TY S K+
Sbjct: 798 DREPAMAMSAPCKQLAQLFSIAVAFPKTGVPAGIPSQLRPTDYPDFMEKPDKPTYHSEKV 857
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNG 976
+G+L+R++K + S+++ ++ Y D+ V G D+T +A K YD +L
Sbjct: 858 IGKLFRKVKDKTPQATSIAT-FTMDVARKSYAGDMIVNGFEDYTDEAFYYKSEYDNKLGN 916
Query: 977 LLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSD 1035
L+ Y + + E M + + + E + + + RKE R F+K SD +
Sbjct: 917 LMDYYGIKTEAEILSGGVMKASKTFDRRKDAEAIGVAVRSLRKEARTWFKK-RSDID--- 972
Query: 1036 NEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
++L KASAWY VTYH + L +G R +SF W D L +IK
Sbjct: 973 ---DML--AKASAWYHVTYHHTY----WGLYNEGLRRD-HFISFPWCVYDQLIQIK 1018
>gi|291228412|ref|XP_002734181.1| PREDICTED: RNA-dependent RNA polymerase Family family member
(rrf-3)-like [Saccoglossus kowalevskii]
Length = 1491
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 253/774 (32%), Positives = 380/774 (49%), Gaps = 103/774 (13%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR---------VTFMDEGLQTMNANVLSYYVAPIVK 439
+RR+++TP++ + +R LR + F DE Q +
Sbjct: 384 LRRVMVTPSRLIFLQPELMFENRVLRRYSEEYCARLVFKDENYQRL-------------- 429
Query: 440 DITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGE-TSVL 498
SN S + V ++ S L +GF + R Y FLA S++QLR+H WF++K +
Sbjct: 430 ---SNPVSISSDVANKIISTLQNGFQVADRNYEFLACSNSQLREHGCWFYAKDNHGNTAA 486
Query: 499 DIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVD----HELP---DIKRNGYV 550
+I+ WMG+F+ + +A Y +RMG CFS++ TV + +V ++ DI + Y
Sbjct: 487 NIREWMGDFSKIRCVATYMSRMGQCFSTSEETVNVTVEDVTVSNIEDITGGMDINQKPYC 546
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSM 610
FSDGIGKI+ L ++ + K + SAYQIRYAG KG+VA P+ G ++ +R SM
Sbjct: 547 FSDGIGKISKQLIEKICE--KTEKHVVASAYQIRYAGSKGMVALDPSLT-GEQIMIRKSM 603
Query: 611 KKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD 670
KF S H ++EI + T+ LNRQ+IT+LS L + D++F +Q M + L M + D
Sbjct: 604 LKFPSEHDNIEIMNLTKPARLHLNRQVITILSGLGIEDKVFLKLQHRMLNNLANMFLKED 663
Query: 671 VAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML--TYE--LGELKECQCFI---QV 723
VA L+ ++ G M++ G TEP + +L Y+ LGEL+ I Q
Sbjct: 664 VAAAWLSRR-SQIGINFKHMMTCGISLTTEPFFKSLLQAVYKSLLGELRRRARIILPPQF 722
Query: 724 SESSL----ENCFSKHGSRFAE-TKKLQ-------VINGFVVIAKNPCLRPGDVRILEAV 771
+ + + E ++G F + +KKL V +G VV+ K PC PGDVR +AV
Sbjct: 723 ARNMMGVIDETGALQYGQVFIQYSKKLDKPQKEKIVHSGPVVVTKFPCYHPGDVRKFQAV 782
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI--------PPSKKSC 823
D P L+HL DC+VFP++G RPH NE +GSDLDGD Y+VTW L+ P +
Sbjct: 783 DIPALYHLIDCIVFPRQGPRPHPNEMAGSDLDGDEYFVTWLPELLFDRENHEAMPFPAAV 842
Query: 824 PPMECTPAEA----KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAV 879
P E K +T ++ + LG + NAH+ AD+ G F + C+ + KL + AV
Sbjct: 843 KKELTNPVEVADMIKFVTEYIQNDCLGLMANAHLAMADQQSDGIFSDMCLNICKLLSEAV 902
Query: 880 DSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENI------S 933
D KTG T+ + +P YPDFM ++ YKS ILG+LYR I S
Sbjct: 903 DFAKTGNCPTLDKNQQPNTYPDFMGKQDKTNYKSKHILGKLYRHCWSLESATIPKLRAHS 962
Query: 934 VSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS 993
+ D + ++ D L PG + + A Y+ QL L+ QY + +
Sbjct: 963 YHKDSDYDVRNVEVDQSLLYPGYEEHLSFANKSLKKYNNQLRLLMSQYGIESEAEAISGC 1022
Query: 994 MPKYNSRKQGE---------LQERLKHSYSAFRKEFRQVF---EKMNSDFELSDNEKNVL 1041
+ K N R G+ ++ +L H S R+EF F SD + D E+N
Sbjct: 1023 ITKLNKRITGKGERFDAEKVIRAKLAHLRSVTRREFDSSFGDEANGGSDNDDEDEERNDK 1082
Query: 1042 YEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQ 1095
KASA+Y VTY S R L+SF W+ D L +++++ Q
Sbjct: 1083 ILAKASAFYYVTY---------------SQRDTQLISFPWVVADLLRKVRLRGQ 1121
>gi|260801473|ref|XP_002595620.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
gi|229280867|gb|EEN51632.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
Length = 1282
Score = 345 bits (885), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 260/783 (33%), Positives = 372/783 (47%), Gaps = 101/783 (12%)
Query: 389 VRRLVITPTKAYWF---------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVK 439
VRR+ +TPT+ + + K D F+RV+ DE ++A
Sbjct: 257 VRRVFVTPTRLMFMHPEIVRDNRILRKYGEDNFMRVSIRDEDFCKLSA------------ 304
Query: 440 DITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD 499
++ F RVK L DG + R+Y FLA S++QLR+H+ WFF+ G+ +
Sbjct: 305 -----VGGEEETTFTRVKKFLQDGLLVGDRKYVFLAASNSQLREHNVWFFASDGKNTAES 359
Query: 500 IKNWMGEFT-AKNIAKYAARMGLCFSSTHATVE--IPPTEVDHELPDIKR---NGYVFSD 553
I+ MG+F+ K A ARMG CFS+T +V I EV +P++K N Y FSD
Sbjct: 360 IRKDMGDFSDIKCPATVLARMGQCFSNTEPSVTALISAGEV-VRIPEVKGGYPNVYCFSD 418
Query: 554 GIGKITPDLAMEVAQ--ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMK 611
GIGKI+ LA +V + + + PSAYQIRY G KGVVA P+ D + M +R SM
Sbjct: 419 GIGKISQSLAQKVNERRAIGRGETEVPSAYQIRYGGVKGVVAVDPSLDSDV-MEVRPSMM 477
Query: 612 KFKSCHTSLEICSWTRFQPG--FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS 669
KF S +EIC + PG +LNRQ+IT+LS L V D+ F +Q +M L+ MLV
Sbjct: 478 KFLSFDQQIEICMTS--HPGRLYLNRQVITILSALGVPDQTFQQLQEAMLQNLSDMLVRE 535
Query: 670 DVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPH----LQGMLTYELGELKECQCFIQV-- 723
DVAFE + G + G TEP LQ M T LGEL+ + I++
Sbjct: 536 DVAFESMKRRAQPLGLPLGRLSRCGLHVTTEPFFRAMLQKMFTCFLGELRR-RARIEIPP 594
Query: 724 -----------SESSLE--NCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
+LE F ++ + + G VV+ +NPC PGD+R L A
Sbjct: 595 EYGRNMLGVLDETGTLEYGQVFVQYTEDITDKGGQTKVTGDVVVTRNPCFHPGDLRKLRA 654
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP 830
VD P LHH+ D +VFP KG RPH NE SG DLDGD ++VTW LI P K + PM+ T
Sbjct: 655 VDIPSLHHMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWYPGLIFP-KPNQGPMDFTA 713
Query: 831 AEAKPLTC------------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATA 878
K L ++ + LGQI NAH+ A + G F C+ LAK + A
Sbjct: 714 QPKKELPSVETHDIIDFIVEYIANDRLGQIANAHLAFAHTEKEGIFSSKCLGLAKKHSDA 773
Query: 879 VDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQT-YKSNKILGRLYRQIKGAYDENISVSSE 937
VD PKTG T+ +P +YPDFM ++ +T +S + G++YR+ + +
Sbjct: 774 VDFPKTGVCPTLKMEERPLEYPDFMGKKKGKTSRRSEAVQGKMYRECLRIERVCSHLHKD 833
Query: 938 VDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE-------FRH 990
D +I D D + +R K + +L L+ QY ++ + R
Sbjct: 834 KDTGGKNIEIDPDFTHKDRKRYAVSSRQAKDDFYDKLQDLMSQYGIDTEAEAVSGCFVRM 893
Query: 991 IWSMPKYNSRKQGE--LQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASA 1048
M R + E ++R+ H R+EF F +S +L +NV+ KASA
Sbjct: 894 HHHMEDRYERFEAERIAKDRIAHLRKQTRQEFFAEFGGEDS-IDLDHCPENVM--AKASA 950
Query: 1049 WYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNN 1108
WY +Y S + LLSF W+ D LA +K + + I + +
Sbjct: 951 WYHASY---------------STGNPNLLSFPWVVADVLAELKKRATRSSPIVEQPVFDR 995
Query: 1109 LAR 1111
+ R
Sbjct: 996 ITR 998
>gi|212544602|ref|XP_002152455.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
gi|210065424|gb|EEA19518.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
Length = 1359
Score = 343 bits (879), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 279/877 (31%), Positives = 414/877 (47%), Gaps = 138/877 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSD-SFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEK 362
+ F I + + + G ++++ S F L+ +T L+H+ + K+ +DA K
Sbjct: 435 LPFAIRYQLEVCISHGYISEYTASKPEFVQRLKDMEERKALTLLEHVATDKKIYWDAM-K 493
Query: 363 LKDVQECLIKNPKLNEGPKNIDDIA-EVRRLVITPTKAYWFLESKDV-----------AD 410
+ D I PK +NI +R +TP+ YW S ++ AD
Sbjct: 494 IFD-----ILFPK-GVTRRNIPSYCCMIRTATVTPSTIYWNTPSMEITNRVLRRYSEHAD 547
Query: 411 RFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
RFLRV F DE + I S +F R+K +S+G L R+
Sbjct: 548 RFLRVRFKDEKFEGR---------------INSTHHDTMDEIFARIKRTMSNGIILGDRK 592
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHA- 528
Y FLAF ++Q R+H A+FF+ + +I+ WMGEF+ +NIAKYAAR+G CFS+T A
Sbjct: 593 YEFLAFGNSQFREHGAYFFASEAHVTAANIRAWMGEFSEIRNIAKYAARLGQCFSTTRAI 652
Query: 529 ---TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD--GSPPPSAYQI 583
TVE+ +PD++R GY FSDG+G+I+ LA Q LK+ PPSAYQ
Sbjct: 653 NTCTVEL------KRIPDVERGGYTFSDGVGRISRFLAQMTQQELKIKTPDKEPPSAYQF 706
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KG++ G + +R S +KF + H LEI W++F LNRQ+I +LS+
Sbjct: 707 RLGGCKGMLVLSDVP-RGREIQIRPSQEKFPANHQGLEIIRWSQFSSATLNRQLIAVLSS 765
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEP 701
L VSDE+F M S L A +L T + M+S GF +P
Sbjct: 766 LGVSDEVFHEKLRRMVSNLEEATRDDRAAMRLLQKYIDPNEMTLVLSKMVSDGFLQSRDP 825
Query: 702 HLQGMLT----YELGELKE--------CQCFIQVSES-------SLENCFSKHGSR---- 738
+ ++T + + LKE C + V + S E H SR
Sbjct: 826 FVTSIITLWKAWSIKYLKEKAKITIEDGACLLGVLDETATLQGFSYEKVKKPHLSRESKL 885
Query: 739 -----------FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
A+ KK VI G ++A+NP L PGD+R++ AVDRPEL HL D +V PQ
Sbjct: 886 DALPEIFLQVYRADEKKYCVIKGVCILARNPSLHPGDIRVVRAVDRPELAHLKDVVVLPQ 945
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL----------T 837
GDR + SG DLDGD Y V WD++L+ P++ PM+ P + L T
Sbjct: 946 LGDRDIASMCSGGDLDGDDYLVIWDKDLV-PNQWFRAPMDYAPIKGVNLDRSVTVNDITT 1004
Query: 838 CHVNHQ---NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
VN+ +L +I +AH+ +D G CI LA+L + AVD KTG+ +P L
Sbjct: 1005 FFVNYMKNDSLPRIAHAHLAWSDFLMNGVESPKCIRLAQLHSNAVDYNKTGEPAYLPRDL 1064
Query: 895 KPKKYPDFMEIE---EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP-VDIHYDTD 950
+P+++P FME + QTY+S KILG+LY + VD +P D+ +D
Sbjct: 1065 RPRRWPHFMEKNYKPKDQTYQSKKILGQLYDAV-----------DRVDFHPDFDVPFDKR 1113
Query: 951 -LEVPGSV--DFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGE 1004
LE SV + AR K YD L ++ Q+ + R EF +WS + N K +
Sbjct: 1114 VLESGVSVTDNIMQFARELKVDYDLALKRIMAQHEI-RTEF-EVWSTFVLSHANLSKDYK 1171
Query: 1005 LQERLKHSYSAFRKEF-RQVFEKMNS-DFELSDNEKNVLYEQKASAWYQVTYHR------ 1056
E L A ++ F ++ ++K+ DF + A A Y VT
Sbjct: 1172 FHEELGGITKALKERFQKECYDKVGGRDFN--------HIKPMAVAIYSVTNDEVNAALA 1223
Query: 1057 EWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
E+ K + D + ++ ++SFAW+ D L R+ ++
Sbjct: 1224 EFRKNNPDTKIKPEPENLPMISFAWLFPDVLGRVALR 1260
>gi|326522592|dbj|BAK07758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 226/591 (38%), Positives = 316/591 (53%), Gaps = 66/591 (11%)
Query: 541 LPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAK 598
LP++ NG YVFSDGIG I+ D A EV++ KL PSA+QIRY GYKGVVA P
Sbjct: 10 LPEVT-NGTKYVFSDGIGTISADFADEVSRKCKL-ARFTPSAFQIRYGGYKGVVAIDPRS 67
Query: 599 DDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASM 658
++SLR SM KF S + +L++ +++++QP FLNRQ+ITLLSTL V D IF Q +
Sbjct: 68 H--WKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAA 125
Query: 659 ASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGE 713
+LN ++ A + + E N +L G++P EP+L +L +L E
Sbjct: 126 VMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLE 185
Query: 714 LKECQCFIQVSESSLENCFS-----KHGSRFAETKKLQ------VINGFVVIAKNPCLRP 762
LK ++ C K+G F + V+ G VV+AKNPCL P
Sbjct: 186 LKTKSRIFIPEGRAMMGCLDETRTLKYGEVFIQASNSANESDKFVVTGKVVVAKNPCLHP 245
Query: 763 GDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
GD+RIL+AV P L H+ +C+VFPQ+G RPH NE SGSDLDGD+Y+V+WD +LIP +
Sbjct: 246 GDIRILKAVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIP--TRM 303
Query: 823 CPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCI 869
PM+ TPA + L ++ +++LG I NAHVV AD+ A CI
Sbjct: 304 VAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCI 363
Query: 870 LLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK---- 925
LA+L + AVD PKTG +PS L ++YPDFME + TY S ++G+LYR+IK
Sbjct: 364 KLAELFSIAVDYPKTGVPAQIPSELHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSP 423
Query: 926 --GAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV 983
G + ++++ S YDTDL V G D+ +A K YD +L L+ Y +
Sbjct: 424 HIGHFTKDVARRS----------YDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGI 473
Query: 984 NRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNV 1040
+ I M K N K + + ++ + + RKE R F M++D +E +
Sbjct: 474 KSEAEIISGCILKMAK-NFTKSSD-ADAIRLAVKSLRKEARSWFSDMSADESGDVHEASY 531
Query: 1041 LYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
KASAWY VTYH E+ + E+ L+SF W D L IK
Sbjct: 532 ---AKASAWYHVTYHPEYYGCYNKIYERPH-----LISFPWCVYDKLLHIK 574
>gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1]
Length = 1295
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 270/878 (30%), Positives = 410/878 (46%), Gaps = 129/878 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ FE+ + + + +G LN+H+++ F D L P L+ ++ +R + D +
Sbjct: 399 LPFEVRYQLEVCISQGQLNEHKITKEFLDKLASMPSHRAKEYLE--FAAERVLKDGHPTT 456
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAE----VRRLVITPTKAYWFLESKDVA---------- 409
D + K+I I + VRR VITPT + + +V+
Sbjct: 457 IDPMSTFDSQRDSGDNYKSISRIPQYCGLVRRAVITPTTVRYSTPNIEVSNRVMRRFRHI 516
Query: 410 -DRFLRVTF---MDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
DRFLR+ F M++G T+N + Q ++KR+ + +G
Sbjct: 517 QDRFLRIQFTEEMEKGKITVNKD-------------------QNDEIYKRILRTMYEGIR 557
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
+ R Y FLAF ++QLR + A+FF S DI+ WMG+F+ K +AKYAAR+G CFS
Sbjct: 558 IGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWMGQFSHIKVVAKYAARLGQCFS 617
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
+T I ++PD++RNGY F+DG+GKI+ LA V + + +D PSA+Q R
Sbjct: 618 TTRDVRGISSPNC-LQIPDVERNGYCFTDGVGKISVFLAKLVGEDMAIDICADPSAFQFR 676
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
G KGV+A WP G + +R S KKF+S LEI W R+ LN Q I +L L
Sbjct: 677 MGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGLEIIRWARYATATLNLQTILILECL 736
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQT--E 700
V + F T+ + L + +DVA E+L EQ N + + +L A FK +T E
Sbjct: 737 GVPIKSFTTLLDQQLKQYELAMRDNDVAIEMLERFRDEQHNHSCLADLLRADFKTETFQE 796
Query: 701 PHLQGML----TYELGELKECQCFIQVSESSL------------ENCFSKHGSRFAETKK 744
P + ++ ++ + LKE + I V +S+ + F GS+ + +
Sbjct: 797 PFVVNVINLWQSWSIKSLKE-KARIHVPKSAFVLGCVDETGTLRGHSFDTEGSKEKDVHR 855
Query: 745 L----------------QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
L +I G V+ +NP L PGD+R++EAVD LHHL D +VFP
Sbjct: 856 LPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPGDIRVVEAVDCKALHHLTDVVVFPST 915
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN------- 841
GDRP N SG DLDGD ++V WD +L+ PS+ + PPM +P + L VN
Sbjct: 916 GDRPVPNMLSGGDLDGDDFFVIWDPSLM-PSEWNHPPMNYSPLDPIELKRDVNVDDLRNF 974
Query: 842 ------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
+ L I +H AD E G C+ LA+L + AVD PKTG + +
Sbjct: 975 FVKYLKNDKLPLIAMSHRAFAD--ELGPKSSKCLELAELHSKAVDYPKTGNPAVLRQDQQ 1032
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPG 955
P+K+P +M E+ +Y S K LG +Y ++ +V+ NPV +D +
Sbjct: 1033 PRKWPHWM--EKRHSYHSRKALGVIYDKV---------AHKKVEFNPV---WDRPFDKRI 1078
Query: 956 SVDFTAD------ARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQ--E 1007
+ F D AR K YD + +L Q N + EF S P + + E
Sbjct: 1079 TKRFELDNETLGVARKIKAEYDTAVRRILSQ-NSLKTEFELFTSFPLTRPAVGSDYKFAE 1137
Query: 1008 RLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLE 1067
L + + ++ ++ V K D EK E +A Y VT E +K +L+
Sbjct: 1138 DLSCEFRSIKEHYQDVCIKAAGG---KDAEK---LEPFVAAMYTVT--EEQIKNEESILQ 1189
Query: 1068 -QG-SARSVVLLSFAWIANDYLARIKIK--CQEMANIG 1101
QG +S+ L+SF WI + + RI + NIG
Sbjct: 1190 PQGLEPKSMPLISFPWIFHGVMCRIATEGAVDPRTNIG 1227
>gi|408392756|gb|EKJ72076.1| hypothetical protein FPSE_07701 [Fusarium pseudograminearum CS3096]
Length = 1206
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 269/881 (30%), Positives = 410/881 (46%), Gaps = 129/881 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ FE+ + + + +G LN+H+++ F L P L+ ++ +R + D +
Sbjct: 310 LPFEVRYQLEVCISQGQLNEHKITKEFLGKLASMPSHRAKEYLE--FAAERVLKDGHPTT 367
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAE----VRRLVITPTKAYWFLESKDVA---------- 409
D + K+I I + VRR VITPT + + +V+
Sbjct: 368 TDPMSTFDSQRDSGDNYKSISRIPQYCGLVRRAVITPTTVRYSTPNIEVSNRVMRRFRHI 427
Query: 410 -DRFLRVTF---MDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
DRFLR+ F M++G T+N + Q ++KR+ + +G
Sbjct: 428 QDRFLRIQFTEEMEKGKITVNKD-------------------QNDEIYKRILRTMYEGIR 468
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
+ R Y FLAF ++QLR + A+FF S DI+ WMG+F+ K +AKYAAR+G CFS
Sbjct: 469 IGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWMGQFSHIKVVAKYAARLGQCFS 528
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
+T I ++PD++RNGY F+DG+GKI+ LA V + + +D PSA+Q R
Sbjct: 529 TTRDVRGISSPNC-LQIPDVERNGYCFTDGVGKISVFLAKLVGEDMAIDICADPSAFQFR 587
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
G KGV+A WP G + +R S KKF+S LEI W R+ LN Q I +L L
Sbjct: 588 MGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGLEIIRWARYATATLNLQTILILECL 647
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQT--E 700
V F T+ + L + +DVA E+L EQ N + + +L A FK +T E
Sbjct: 648 GVPIRSFTTLLDQQLRQYELAMRDNDVAIEMLERFRDEQHNHSCLADLLRADFKTETFQE 707
Query: 701 PHLQGML----TYELGELKECQCFIQVSESSL------------ENCFSKHGSRFAETKK 744
P + ++ ++ + LKE + I V +S+ + F GS+ + +
Sbjct: 708 PFVVNVINLWQSWSIKSLKE-KARIHVPKSAFVLGCVDETGTLRGHSFDTEGSKEKDVHR 766
Query: 745 L----------------QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
L +I G V+ +NP L PGD+R++EAVD LHHL D +VFP
Sbjct: 767 LPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPGDIRVVEAVDCKALHHLTDVVVFPST 826
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN------- 841
GDRP N SG DLDGD ++V WD +L+ PS+ + PPM +P + L VN
Sbjct: 827 GDRPVPNMLSGGDLDGDDFFVIWDPSLM-PSEWNHPPMNYSPLDPIELKRDVNVDDLRNF 885
Query: 842 ------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
+ L I +H AD E G C+ LA+L + AVD PKTG + +
Sbjct: 886 FVKYLKNDKLPLIAMSHRAFAD--ELGPKSSKCLELAELHSKAVDYPKTGNPAVLRQDQQ 943
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPG 955
P+K+P +M E+ +Y S K LG +Y ++ +V+ NPV +D+ +
Sbjct: 944 PRKWPHWM--EKRYSYHSRKALGVIYDKV---------AHKKVEFNPV---WDSSFDKRI 989
Query: 956 SVDFTAD------ARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQ--E 1007
+ F D AR K YD + +L Q N + EF S P + + E
Sbjct: 990 TKRFELDNETLGVARKIKAEYDTAVRRVLSQ-NALKTEFELFTSFPLTRPAVGSDYKFAE 1048
Query: 1008 RLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLE 1067
L + + ++ ++ V K D EK E +A Y VT E +K +L+
Sbjct: 1049 DLSCEFRSIKEHYQDVCIKAAGG---KDAEK---LEPFVAAMYTVT--EEQIKNEESILQ 1100
Query: 1068 -QG-SARSVVLLSFAWIANDYLARIKIK--CQEMANIGKSK 1104
QG +S+ L+SF WI + + RI + NIG +
Sbjct: 1101 PQGLEPKSMPLISFPWIFHGVMCRIATEGAVDPRTNIGTHR 1141
>gi|350631624|gb|EHA19995.1| hypothetical protein ASPNIDRAFT_179412 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 266/878 (30%), Positives = 412/878 (46%), Gaps = 143/878 (16%)
Query: 304 VSFEIMFLVNAVMHKGILNQ----HQLSDSFFDLLRCQPREVI--VTALKHIYSYKRPVF 357
+ F + + + + G L++ H+ + +L + R+++ V KH Y +F
Sbjct: 375 LPFPVRYQLEVCISNGYLSEFTMTHEFAVKLAELGEAKARKLLENVAGQKHQYYDPMKIF 434
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV--------- 408
D ++ ++ K P +R ITP+ Y+ L S D+
Sbjct: 435 D-LPFVRGIRATKAKIPPY---------CCHMRSATITPSTVYYNLPSVDISNRIIRRYM 484
Query: 409 --ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
ADRFLRV F DE L I + S + +F R+K L++G +
Sbjct: 485 EHADRFLRVRFTDEKL---------------YGRINARSDNSNDEIFTRIKRALANGIVI 529
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
RRY FLAF ++Q R+H A+FF+ + + + +I+ WMG F+ +N+AKYAAR+G CFS+
Sbjct: 530 GDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFST 589
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD--GSPPPSAYQI 583
T A P ++ +PD++RNGY FSDG+GKI+ LA LK+ PPSA+Q
Sbjct: 590 TRAVAGC-PVQI-RNIPDVERNGYTFSDGVGKISRFLAQMAMTELKIKTPTGEPPSAFQF 647
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KG++A + + +R S KF + H LEI W++F LNRQ+I ++ST
Sbjct: 648 RLGGCKGMLAV-SSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQFSMATLNRQLILVMST 706
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEP 701
L V DE+F SM L+ + + A EVL T + M+S GF+ EP
Sbjct: 707 LGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKEP 766
Query: 702 HLQGML----TYELGELKECQCF-------------------------IQVSESSLENCF 732
L +L T+ + LKE I ++SLE
Sbjct: 767 FLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQKL 826
Query: 733 SKHGSRFAETKK---------LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCL 783
+ F + + +VI G ++A+NP L PGD+R++ AV+ PELH L D +
Sbjct: 827 AALPEIFLQIPRSEASEDGATYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHSLRDVV 886
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL------- 836
V PQ GDR + SG DLDGD Y + WD++LI PM T +A+ L
Sbjct: 887 VLPQTGDRDIASMCSGGDLDGDDYLIIWDQDLI-HKDWFLDPMRYTSNKAQDLDHDVTVD 945
Query: 837 ------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
++ + +L I +AHV AD+ E G +E CI LA+L + AVD KTG+ M
Sbjct: 946 EVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTGRPAIM 1005
Query: 891 PSHLKPKKYPDFMEIEEYQ--TYKSNKILGRLYRQIKGAYDENISVSSEVDINP-VDIHY 947
+L+P+++P FME + + Y S KILG+LY ++ VD P +++ +
Sbjct: 1006 TRNLQPRRWPHFMEKPKPKDLIYHSEKILGQLYDAVE-----------RVDFVPSLEMPF 1054
Query: 948 DTDL---EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNS---RK 1001
D + + + D A+N K +D + ++ Q+ + + EF IWS N K
Sbjct: 1055 DERILNCSIEVNEDLYTFAKNLKVEHDTAIRRIMAQHEI-KTEF-EIWSTFILNHSQMSK 1112
Query: 1002 QGELQERLKHSYSAFRKEFR-QVFEKMNS-DFELSDNEKNVLYEQKASAWYQVTYHREWV 1059
+ E + +A R+ FR Q + K+ FE L A A Y+VT+ E +
Sbjct: 1113 DYKFHEEIGAISAAHRETFRKQCYNKVEGRTFE--------LLAPLAVAMYRVTH--EEM 1162
Query: 1060 KKSLDLLEQGSAR-------SVVLLSFAWIANDYLARI 1090
++L + S + + L+SF WI L R+
Sbjct: 1163 TQALRKHREKSPQHGTPKINQLPLISFPWILPHILGRV 1200
>gi|121704872|ref|XP_001270699.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
gi|119398845|gb|EAW09273.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
Length = 1428
Score = 332 bits (852), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 250/789 (31%), Positives = 376/789 (47%), Gaps = 125/789 (15%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R ITPT Y+ S D+ ADRFLRV F DE L
Sbjct: 496 MRSARITPTTIYYNTPSVDISNRVIRHYIEFADRFLRVRFTDEKL--------------- 540
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
I S VF R+K L++G + RRY FLAF ++Q R+H A+FF+ + +
Sbjct: 541 FGRINSTMDDTMDEVFTRIKRALANGIVVGDRRYEFLAFGNSQFREHGAYFFAPLPNLTA 600
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F +N+AK+AAR+G CFS+T A + P ++ H++ D+ RNGY FSDG+G
Sbjct: 601 ANIRAWMGTFNDIRNVAKHAARLGQCFSTTRA-ISGCPVQI-HKIDDVVRNGYTFSDGVG 658
Query: 557 KITPDLAMEVAQILKLDG--SPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA VA LK+ PPSA+Q R G KG++ P + +R S KF
Sbjct: 659 RISRFLAQMVASELKIKTPIDEPPSAFQFRLGGCKGMLTVSPEAQRH-EVHIRKSQYKFA 717
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H LEI W++F LNRQ+I +LS+L + D++F +M LN + + A
Sbjct: 718 AAHNGLEIIRWSQFSMATLNRQLIIVLSSLGIPDQVFHEKLQAMLRSLNEAMESDSQAIY 777
Query: 675 VLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML----TYELGELKE------------ 716
L T + M+ GF+ EP + +L + L LKE
Sbjct: 778 WLKKYVDPNQMTLTVSQMVLDGFRRTQEPFVTSVLRLWRAWHLKYLKEKAKIAIDKGANL 837
Query: 717 --CQCFIQVSESSLENCFSKHGSR---------------FAETKKLQVINGFVVIAKNPC 759
C + + EN +K R E+ K Q+I G ++A+NP
Sbjct: 838 LGCMDETGILKGYFENVPAKDAPREKKLTSLPEVFVQILHPESGKYQIIEGVCILARNPS 897
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
L PGD+R++ AV+ PEL HL D +VFPQ GDR + SG DLDGD Y V WD++LIP
Sbjct: 898 LHPGDIRVVRAVNVPELSHLKDVVVFPQTGDRDVPSMCSGGDLDGDDYLVIWDQDLIPKD 957
Query: 820 KKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDE 866
PM+ T +A+ L ++ + L +I +AH+ ADR EYG +
Sbjct: 958 WFRI-PMKYTSDKAQDLNQDVTVDHITSFFVIYMKNDFLPRIAHAHLAWADRLEYGVNEG 1016
Query: 867 NCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE---EYQTYKSNKILGRLYRQ 923
CI LA+L + AVD KTG+ M L+PK +P FME + + + Y+S KILG+LY
Sbjct: 1017 KCIRLAQLHSDAVDYNKTGRPANMTRSLQPKMWPHFMEKKHKPKERIYRSGKILGQLYDA 1076
Query: 924 IKGAYDENISVSSEVDINP-VDIHYDTDL---EVPGSVDFTADARNQKCSYDGQLNGLLG 979
++ VD P +++ +D + + S D AR+ K YD ++ ++
Sbjct: 1077 VE-----------RVDFVPSLEMPFDERILKCRLQVSDDLMQTARDLKADYDAAMHRIMA 1125
Query: 980 QYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFR-QVFEKMNS-DFELS 1034
Q+ + R EF +WS + N K + E L + R +R + +EK+ FE
Sbjct: 1126 QHEI-RTEF-EVWSTFVLSHANMSKDYKFHEELGMLSLSLRGIYRKKCYEKVGGRSFE-- 1181
Query: 1035 DNEKNVLYEQKASAWYQVTY---------HREWVKKSLDLLEQGSAR--SVVLLSFAWIA 1083
L A A Y+VT+ +R L + + + + +SF W+
Sbjct: 1182 ------LLAPLAVAMYRVTHEEMTTALQKYRAENPHDEKLFHKPTPKIDQLPFISFPWVL 1235
Query: 1084 NDYLARIKI 1092
+ L ++ +
Sbjct: 1236 QNILGKVAM 1244
>gi|145245289|ref|XP_001394912.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus niger CBS 513.88]
gi|134079610|emb|CAK40827.1| unnamed protein product [Aspergillus niger]
Length = 1382
Score = 332 bits (852), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 265/878 (30%), Positives = 415/878 (47%), Gaps = 143/878 (16%)
Query: 304 VSFEIMFLVNAVMHKGILNQ----HQLSDSFFDLLRCQPREVI--VTALKHIYSYKRPVF 357
+ F + + + + G L++ H+ + +L + R+++ V KH Y +F
Sbjct: 384 LPFPVRYQLEVCISNGYLSEFTMTHEFAVKLAELGEAKARKLLENVAGQKHQYYDPMKIF 443
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV--------- 408
D ++ ++ K P +R ITP+ Y+ L S D+
Sbjct: 444 D-LPFVRGIRATKAKIPPY---------CCHMRSATITPSTVYYNLPSVDISNRIIRRYM 493
Query: 409 --ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
ADRFLRV F DE L I + S + +F R+K L++G +
Sbjct: 494 EHADRFLRVRFTDEKL---------------YGRINARSDNSNDEIFTRIKRALANGIVI 538
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
RRY FLAF ++Q R+H A+FF+ + + + +I+ WMG F+ +N+AKYAAR+G CFS+
Sbjct: 539 GDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFST 598
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLA-MEVAQI-LKLDGSPPPSAYQI 583
T A P ++ +PD++RNGY FSDG+GKI+ LA M + ++ +K PPSA+Q
Sbjct: 599 TRAVAGC-PVQI-RNIPDVERNGYTFSDGVGKISRFLAQMAMTELKIKTPTGEPPSAFQF 656
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KG++A + + +R S KF + H L+I W++F LNRQ+I ++ST
Sbjct: 657 RLGGCKGMLAV-SSDAQPQEIHIRESQNKFPTVHNGLDIIRWSQFSMATLNRQLILVMST 715
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEP 701
L V DE+F SM L+ + + A EVL T + M+S GF+ EP
Sbjct: 716 LGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKEP 775
Query: 702 HLQGML----TYELGELKECQCF-------------------------IQVSESSLENCF 732
L +L T+ + LKE I ++SLE
Sbjct: 776 FLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQKL 835
Query: 733 SKHGSRFAETKK---------LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCL 783
+ F + + +VI G ++A+NP L PGD+R++ AV+ PELH L D +
Sbjct: 836 AALPEIFLQIPRSEASEDGATYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHSLRDVV 895
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL------- 836
V PQ GDR + SG DLDGD Y + WD++LI PM T +A+ L
Sbjct: 896 VLPQTGDRDIASMCSGGDLDGDDYLIIWDQDLI-HKDWFLDPMRYTSNKAQDLDHDVTVD 954
Query: 837 ------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
++ + +L I +AHV AD+ E G +E CI LA+L + AVD KTG+ M
Sbjct: 955 EVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTGRPAIM 1014
Query: 891 PSHLKPKKYPDFMEIEEYQ--TYKSNKILGRLYRQIKGAYDENISVSSEVDINP-VDIHY 947
+L+P+++P FME + + Y S KILG+LY ++ VD P +++ +
Sbjct: 1015 TRNLQPRRWPHFMEKPKPKDLIYHSEKILGQLYDAVE-----------RVDFVPSLEMPF 1063
Query: 948 DTDL---EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNS---RK 1001
D + + + D A+N K +D + ++ Q+ + + EF IWS N K
Sbjct: 1064 DERILNCSIEVNEDLYTFAKNLKVEHDTAIRRIMAQHEI-KTEF-EIWSTFILNHSQMSK 1121
Query: 1002 QGELQERLKHSYSAFRKEFR-QVFEKMNS-DFELSDNEKNVLYEQKASAWYQVTYHREWV 1059
+ E + +A R+ FR Q + K+ FE L A A Y+VT+ E +
Sbjct: 1122 DYKFHEEIGAISAAHRETFRKQCYNKVEGRTFE--------LLAPLAVAMYRVTH--EEM 1171
Query: 1060 KKSLDLLEQGSAR-------SVVLLSFAWIANDYLARI 1090
++L + S + + L+SF WI L R+
Sbjct: 1172 TQALRKHREKSPQHGTPKINQLPLISFPWILPHILGRV 1209
>gi|115448543|ref|NP_001048051.1| Os02g0736200 [Oryza sativa Japonica Group]
gi|113537582|dbj|BAF09965.1| Os02g0736200, partial [Oryza sativa Japonica Group]
Length = 476
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 191/433 (44%), Positives = 263/433 (60%), Gaps = 32/433 (7%)
Query: 405 SKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGF 464
S D+ + FLR++F+DE + + A LS A S + +T ++KRV S+LSDG
Sbjct: 54 SSDI-ENFLRISFVDEDCEKLRATDLSPRSA-------SGHDANRTALYKRVLSVLSDGI 105
Query: 465 NLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCF 523
+ G+ + FLAFSS+QLRD+SAW F+ + DI+ WMG+F +N+AKYAAR+G F
Sbjct: 106 TIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSF 165
Query: 524 SSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAY 581
SS+ T+++ EV+ E+ DIK NG +VFSDGIGKI+ A EVA L PSA+
Sbjct: 166 SSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAFANEVAMKCNLK-RFAPSAF 222
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
QIRY GYKGVVA P ++SLR SM KF+S + ++++ +++++QPGFLNRQ+ITLL
Sbjct: 223 QIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLL 280
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTE 700
STL V D +F Q ++LN M+ A E + E N +L G++P E
Sbjct: 281 STLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDE 340
Query: 701 PHLQGML----TYELGELKECQCFIQVSESSLENCFS-----KHGSRFAETKKLQ----- 746
P+L +L +L ELK + ++ C K+G F
Sbjct: 341 PYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDR 400
Query: 747 -VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
+ G VVIAKNPCL PGD+RIL AVD P LHH+ +C+VFPQ+G RPH NE SGSDLDGD
Sbjct: 401 FTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGD 460
Query: 806 LYYVTWDENLIPP 818
+Y+V+WD +LIPP
Sbjct: 461 IYFVSWDPSLIPP 473
>gi|115402503|ref|XP_001217328.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189174|gb|EAU30874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1309
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 263/867 (30%), Positives = 396/867 (45%), Gaps = 122/867 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + + + + G L+++ ++ F L L+H+ + KR +D K+
Sbjct: 369 LPFSVRYQLEVCISNGYLSEYAMTREFAVKLSELGETQATKLLEHVATQKRVYYDPM-KI 427
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
D++ IK + P I R +TP+ Y+ S D+ ADRF
Sbjct: 428 FDLK--FIKGATNAKIPPYCCYIRSAR---VTPSTVYYETPSMDMSNRIIRHYIEYADRF 482
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE L + I S + + VF RVK L++G + RRY
Sbjct: 483 LRVRFTDEKL---------------LGRIYSTTDNTMDEVFTRVKRALANGIVIGDRRYE 527
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q R+H A+FF+ + + +I+ WMG F +N+AK+AAR+G CFS+T A
Sbjct: 528 FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFDDIRNVAKHAARLGQCFSTTRAIFG 587
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYK 589
P E+ DI RNGY FSDG+G+I+ LA V LK+ PPS +Q R G K
Sbjct: 588 CPIKV--QEIDDIVRNGYRFSDGVGRISKFLAQMVMSELKIKTPSGEPPSVFQFRLGGCK 645
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++ P + +R S KF + H LEI W++F LNRQ+I +LSTL + D
Sbjct: 646 GILTVSPQAQRQ-EVHIRKSQAKFTATHNGLEIIRWSQFTAASLNRQLIIVLSTLGIRDR 704
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML 707
IF ++ LN L A +L T I M+ GF+ EP +L
Sbjct: 705 IFHEKLRAVLWGLNEALKNDAKAIHLLRRYVDPNQRTLTISQMVVDGFRRTEEPFATSVL 764
Query: 708 T----YELGELKECQCFIQVSESSLENCFSKHGS------------------RFA----- 740
T + L LK+ + + C + G+ RFA
Sbjct: 765 TLWRAWHLKYLKDKAKITIDKGACVFGCMDETGTLKGYFHEKIPDRDAPFEQRFAALPEI 824
Query: 741 --------ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRP 792
+ K +VI G ++A+NP L GD+R+++AVD P L HL D +V PQ GDR
Sbjct: 825 FLQIPNQDKGGKYEVIQGMCILARNPSLHSGDIRVVKAVDVPALRHLQDVVVLPQTGDRD 884
Query: 793 HTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCH 839
+ SG DLDGD Y V WD++LIP PPM T +A+ L +
Sbjct: 885 IASMCSGGDLDGDDYVVIWDQDLIPKDWFR-PPMNYTTNKARDLDRDVTVDEITSFFVTY 943
Query: 840 VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY 899
+ + L I +AH+ ADR + G +E CI LA+L + AVD K G M +L+PK +
Sbjct: 944 MKNDCLPTIAHAHLAWADRLDNGVDEEKCIRLAQLHSDAVDYNKNGTPAHMTRNLEPKLW 1003
Query: 900 PDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDF 959
P FME + + YKS KILG+LY ++ N S E P D + +P + D
Sbjct: 1004 PHFMEKKTEKVYKSGKILGQLYDAVERV---NFVPSLE---KPFDRRI-LNSRIPVAEDL 1056
Query: 960 TADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAF 1016
AR+ K YD L ++ Q+ + + EF +WS + N K + E + S+
Sbjct: 1057 YQFARDMKKDYDIALRRIMAQHEI-KTEF-EVWSTFVLSHANMSKDYKFHEEIGMLSSSL 1114
Query: 1017 RKEF-RQVFEKMNSD------------FELSDNEKNVLYEQKASAWYQVTYHREWVKKSL 1063
R+ F R+ ++K+ + ++ E N E+ + + + + + +
Sbjct: 1115 REGFKRECYDKVGGRGFDRVAPLALAMYRITHEEMNAALEKHRAGFSEDAKNFQKTGPKM 1174
Query: 1064 DLLEQGSARSVVLLSFAWIANDYLARI 1090
D L L+SF WI L +I
Sbjct: 1175 DQLP--------LISFPWIFPRVLGQI 1193
>gi|159127939|gb|EDP53054.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
A1163]
Length = 1423
Score = 326 bits (835), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 258/803 (32%), Positives = 382/803 (47%), Gaps = 125/803 (15%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R ITPT Y+ S D+ ADRFLRV F DE L
Sbjct: 489 MRSARITPTTIYYNTPSVDISNRVIRYYIEYADRFLRVRFTDEKL--------------- 533
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+ I S + VF R+K L++G + RRY FLAF ++Q R+H A+FF+ + +
Sbjct: 534 LGRINSTIDNTMDEVFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPSLTA 593
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F +N+AK+AAR+G CFS+T A P ++ + D+ RNGY FSDG+G
Sbjct: 594 ANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAIAGC-PVQI-RLIDDVVRNGYTFSDGVG 651
Query: 557 KITPDLAMEVAQILKL--DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA A LK+ PPSA+Q R G KG++ P + +R S KF
Sbjct: 652 RISKFLAQMAASELKIRTPSGDPPSAFQFRLGGCKGMLTVSPEAQRQ-EVHIRKSQYKFA 710
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
S H LEI W+++ LNRQ+I +LS+L + D +F +M LN + + A
Sbjct: 711 SVHNGLEIIRWSQYSMATLNRQLIIVLSSLGIQDSVFHDKLRAMLQSLNESMESDSQALC 770
Query: 675 VLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSL 728
L T + M+ GF+ EP + ++ + L LKE + ++L
Sbjct: 771 WLKKYVDPNQMTLVVSQMVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANL 830
Query: 729 ENCFSKHG-----------------SRFA------------ETKKLQVINGFVVIAKNPC 759
C + G + A +T K +VI G ++A+NP
Sbjct: 831 LGCMDETGILRGYSEWIPAKGASDEEKLAALPEIFVQIHHPDTGKCEVIEGVCILARNPS 890
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
L PGD+R++ AV+ P+L HL D +VFPQ GDR + SG DLDGD Y V WD++L+P
Sbjct: 891 LHPGDIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSTCSGGDLDGDDYLVIWDQDLVPED 950
Query: 820 --KKSCPPMECTPAEAKPL--TCHVNHQN-----------LGQICNAHVVHADRSEYGAF 864
+K PM+ T +A+ L VNH L +I +AH+ ADR E G
Sbjct: 951 WFRK---PMKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVN 1007
Query: 865 DENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE---EYQTYKSNKILGRLY 921
+E CI LA+L + AVD KTGK M L+PK +P FME + + YKSNKILG+LY
Sbjct: 1008 EEKCIRLAQLHSDAVDYNKTGKPANMARSLQPKVWPHFMEKKHKPKEMIYKSNKILGQLY 1067
Query: 922 RQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY 981
+ E I +++ P D T + S D AR+ K YD ++ ++ Q+
Sbjct: 1068 DAV-----ERIDFVPSLEM-PFDERILT-CSLGVSDDLVQFARDLKADYDAAMHRIMAQH 1120
Query: 982 NVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFR-QVFEKMNS-DFELSDN 1036
+ EF +WS + N K + E L S+ R +R + +EK+ FE
Sbjct: 1121 EIT-TEF-EVWSTFVLSHSNMSKDYKFHEELGLISSSLRDMYRKKCYEKVGGRSFE---- 1174
Query: 1037 EKNVLYEQKASAWYQVTYHREWVKKSLD-----------LLEQGSAR--SVVLLSFAWIA 1083
L A A Y+VT+ E + +L+ L + + + + +SF WI
Sbjct: 1175 ----LLAPLAVAMYRVTH--EEMTSALEKCRSENHSDGQLFHKPTPKIDQLPFISFPWIL 1228
Query: 1084 NDYLARIKIKCQEMANIGKSKPV 1106
+ L +I + E + G + V
Sbjct: 1229 YNILGKIALGHYEDSEPGSAPTV 1251
>gi|146323311|ref|XP_754927.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus fumigatus Af293]
gi|129558353|gb|EAL92889.2| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
Af293]
Length = 1423
Score = 325 bits (834), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 258/803 (32%), Positives = 382/803 (47%), Gaps = 125/803 (15%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R ITPT Y+ S D+ ADRFLRV F DE L
Sbjct: 489 MRSARITPTTIYYNTPSVDISNRVIRYYIEYADRFLRVRFTDEKL--------------- 533
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+ I S + VF R+K L++G + RRY FLAF ++Q R+H A+FF+ + +
Sbjct: 534 LGRINSTIDNTMDEVFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPSLTA 593
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F +N+AK+AAR+G CFS+T A P ++ + D+ RNGY FSDG+G
Sbjct: 594 ANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAIAGC-PVQI-RLIDDVVRNGYTFSDGVG 651
Query: 557 KITPDLAMEVAQILKL--DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA A LK+ PPSA+Q R G KG++ P + +R S KF
Sbjct: 652 RISKFLAQMAASELKIRTPSGDPPSAFQFRLGGCKGMLTVSPEAQRQ-EVHIRKSQYKFA 710
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
S H LEI W+++ LNRQ+I +LS+L + D +F +M LN + + A
Sbjct: 711 SVHNGLEIIRWSQYSMATLNRQLIIVLSSLGIQDSVFHDKLRAMLQSLNESMESDSQALC 770
Query: 675 VLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSL 728
L T + M+ GF+ EP + ++ + L LKE + ++L
Sbjct: 771 WLKKYVDPNQMTLVVSQMVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANL 830
Query: 729 ENCFSKHG-----------------SRFA------------ETKKLQVINGFVVIAKNPC 759
C + G + A +T K +VI G ++A+NP
Sbjct: 831 LGCMDETGILRGYSEWIPAKGASDEEKLAALPEIFVQIHHPDTGKCEVIEGVCILARNPS 890
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
L PGD+R++ AV+ P+L HL D +VFPQ GDR + SG DLDGD Y V WD++L+P
Sbjct: 891 LHPGDIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSTCSGGDLDGDDYLVIWDQDLVPED 950
Query: 820 --KKSCPPMECTPAEAKPL--TCHVNHQN-----------LGQICNAHVVHADRSEYGAF 864
+K PM+ T +A+ L VNH L +I +AH+ ADR E G
Sbjct: 951 WFRK---PMKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVN 1007
Query: 865 DENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE---EYQTYKSNKILGRLY 921
+E CI LA+L + AVD KTGK M L+PK +P FME + + YKSNKILG+LY
Sbjct: 1008 EEKCIRLAQLHSDAVDYNKTGKPANMARSLQPKVWPHFMEKKHKPKEMIYKSNKILGQLY 1067
Query: 922 RQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY 981
+ E I +++ P D T + S D AR+ K YD ++ ++ Q+
Sbjct: 1068 DAV-----ERIDFVPSLEM-PFDERILT-CSLGVSDDLVQFARDLKADYDAAMHRIMAQH 1120
Query: 982 NVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFR-QVFEKMNS-DFELSDN 1036
+ EF +WS + N K + E L S+ R +R + +EK+ FE
Sbjct: 1121 EIT-TEF-EVWSTFVLSHSNMSKDYKFHEELGLISSSLRDMYRKKCYEKVGGRSFE---- 1174
Query: 1037 EKNVLYEQKASAWYQVTYHREWVKKSLD-----------LLEQGSAR--SVVLLSFAWIA 1083
L A A Y+VT+ E + +L+ L + + + + +SF WI
Sbjct: 1175 ----LLAPLAVAMYRVTH--EEMTSALEKCRSKNHSDGQLFHKPTPKIDQLPFISFPWIL 1228
Query: 1084 NDYLARIKIKCQEMANIGKSKPV 1106
+ L +I + E + G + V
Sbjct: 1229 YNILGKIALGHYEDSEPGSAPTV 1251
>gi|367042188|ref|XP_003651474.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
gi|346998736|gb|AEO65138.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
Length = 1511
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 256/870 (29%), Positives = 414/870 (47%), Gaps = 103/870 (11%)
Query: 301 KEGVSFEIMFLVNAVMHKGILNQHQLSDSFFD-LLRCQPREVIVTALKHIYSYKRPVFDA 359
K + F++ + + + IL ++ + F + LL P + L++ +++
Sbjct: 421 KISLPFDVRYQLEVCISHEILCEYNIQRDFLEKLLELGPNRARLI-LEYAADKGETIYNP 479
Query: 360 YEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLES-----------KDV 408
E LKD L P P D A VR++++TPT+ Y+ + K V
Sbjct: 480 LELLKD-PGALTYYPTTLHIP---DYCALVRKVIVTPTRIYFNTPTVETTNRIVRRYKQV 535
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
D F+RV F DE L+ I + + ++ RV ++ G +
Sbjct: 536 QDHFIRVQFTDELLEGR---------------IRACEVDRDDELYTRVYRVMMQGIRMGR 580
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKV---GETSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
+ FLAF ++Q+R++ A+FF + + + I+ WMG F+ +AK AAR+G CFS
Sbjct: 581 WHWKFLAFGNSQIRENGAFFFCQAEGYPDITCDTIRQWMGNFSHISTVAKLAARLGQCFS 640
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
+T I + ++PD+++ G+ F+DG+GKI+ LA V+Q K+ PPPSA+Q R
Sbjct: 641 TTRLLRCISSPWI-VKIPDVEKGGFCFTDGVGKISMVLASLVSQDWKI--YPPPSAFQFR 697
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
G KGV+ WP G+ + +R S +KF + + LEI ++F LNRQ I +LS L
Sbjct: 698 MGGCKGVLVTWPDAK-GMEVHIRPSQEKFSAEYNGLEIIRCSQFSCATLNRQTILILSCL 756
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQ--GNTAAIMLSAGFKPQTEPH 702
V D++F ++ S + + D A E+L++ E T A M+ GF EP
Sbjct: 757 GVPDDVFTSMMDEQISNYDAAMTDKDKAVELLSSYVDENMTSTTIARMVLNGFMHTQEPF 816
Query: 703 LQGML----TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQ------------ 746
++ +L ++ + LKE I + + C + GS +K +
Sbjct: 817 VRTLLQLWRSWSIKGLKEKARLIVDQGAFVLGCVDETGSLRGHSKATEGRKKIAQHHLPQ 876
Query: 747 ---------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
VI G ++ +NP L PGD+R++EAVD P+L HL D +VFP GDR
Sbjct: 877 IFLQVPDPRDRGAYKVITGLCLVGRNPSLHPGDIRVVEAVDLPQLRHLRDVVVFPLSGDR 936
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM---------ECTPAEAKPLTC---- 838
+ SG DLDGD ++V WD LIPP + S PPM E + AK L
Sbjct: 937 DIPSMCSGGDLDGDDFFVIWDPKLIPP-EWSHPPMNYSAPKSLTEPRASTAKSLATFFVL 995
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
+ + L I +AH+ AD GA C+ LA+L +TAVD KTG L P+K
Sbjct: 996 FMKNDRLPLIAHAHLATADYEVEGAKHRKCLQLAELHSTAVDYVKTGVPAEWNKKLDPRK 1055
Query: 899 YPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVD 958
YP FME + ++Y S +LG+LY + D + +S+ P D + GS +
Sbjct: 1056 YPHFMEKPKSKSYHSTSVLGKLYDMV----DRVVFDNSDNYKLPFDDRILSRFHPLGS-N 1110
Query: 959 FTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG---ELQERLKHSYSA 1015
+AR K YD + ++GQ + R EF +W+ + + G ++QE++ +
Sbjct: 1111 ILKEARKIKTQYDIAMRRIMGQLEI-RTEF-EVWTAFVLSKPRVGTDYKVQEKVGREAAG 1168
Query: 1016 FRKEFR----QVFEKMNSD-FELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGS 1070
+K+FR +V E+ + D E + V +E+ A Y+ ++ L + S
Sbjct: 1169 LKKQFRDLCLKVAEEHHFDRLEFAAAMYRVTWEETRIALYEARQPHVLPDGTVG-LRRIS 1227
Query: 1071 ARSVVLLSFAWIANDYLARIKIKCQEMANI 1100
ARS+ L+SF W+ + L RI I + ++++
Sbjct: 1228 ARSMPLISFPWLFPNELGRIAIGAERLSSL 1257
>gi|317151427|ref|XP_001824654.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus oryzae RIB40]
Length = 1403
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 253/797 (31%), Positives = 389/797 (48%), Gaps = 109/797 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F++ + + + G L++ ++ F L V L+H+ S K+ V+ Y+ +
Sbjct: 386 LPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHV-SAKKQVY--YDPM 442
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
K IK + P + R ITP+ Y+ + D+ ADRF
Sbjct: 443 KIFDLKFIKGVTQAKIPPYCCYMHSAR---ITPSTIYYNTPTVDISNRVIRRFIEHADRF 499
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE L + I S + S +F R+K L++G + RRY
Sbjct: 500 LRVRFTDEKL---------------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYE 544
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q R+H A+FF+ + + +I+ WMG F + +N+AK+AAR+G CFS+T A
Sbjct: 545 FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAG 604
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLA-MEVAQI-LKLDGSPPPSAYQIRYAGYK 589
P V E D++RNGY FSDG+G+I+ LA M ++++ +K PPSA+Q R G K
Sbjct: 605 CPVDVVKIE--DVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCK 662
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++A ++ + +R S KF + H LEI W++F LNRQ+I +LSTL + D+
Sbjct: 663 GMLAV-SSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQ 721
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML 707
+F +M L+ L + A L T I M+ GF+ EP L +L
Sbjct: 722 VFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVL 781
Query: 708 T----YELGELKECQCFIQVSESS-LENCFSKHG-------------------------- 736
T + L LKE + I V + + L C + G
Sbjct: 782 TLWRAWHLKYLKE-KARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPE 840
Query: 737 -----SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
SR KK +VI G ++A+NP L PGD+R++ AV+ P+L HL D +V PQ GDR
Sbjct: 841 IFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQTGDR 900
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TC 838
+ SG DLDGD Y V WD++L+P PM+ T +A+ L
Sbjct: 901 DIASMCSGGDLDGDDYIVIWDQDLLPKDWFR-EPMKYTSNKAQDLDRDVTVNDITSFFVT 959
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
++ + L +I +AH+ AD E G +E CI LA+L + AVD KTG + +L+P+K
Sbjct: 960 YMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEPRK 1019
Query: 899 YPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDTDLEVP 954
+P FME + + Y SNKILG+LY + E I +++ P D + ++EVP
Sbjct: 1020 WPHFMEKFNKPKDRIYHSNKILGQLYDAV-----ERIDFVPSLEM-PFDKRLLNCEIEVP 1073
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKH 1011
D A+N K YD + ++ Q+ + + EF IWS + N+ K + E +
Sbjct: 1074 D--DLLTFAKNLKGQYDDAMRRIMAQHEI-KTEF-EIWSTFVLGHANTSKDYKFHEEIGA 1129
Query: 1012 SYSAFRKEF-RQVFEKM 1027
+ R F +Q +EK+
Sbjct: 1130 ISATLRDTFKKQCYEKV 1146
>gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1458
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 253/797 (31%), Positives = 389/797 (48%), Gaps = 109/797 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F++ + + + G L++ ++ F L V L+H+ S K+ V+ Y+ +
Sbjct: 441 LPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHV-SAKKQVY--YDPM 497
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
K IK + P + R ITP+ Y+ + D+ ADRF
Sbjct: 498 KIFDLKFIKGVTQAKIPPYCCYMHSAR---ITPSTIYYNTPTVDISNRVIRRFIEHADRF 554
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE L + I S + S +F R+K L++G + RRY
Sbjct: 555 LRVRFTDEKL---------------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYE 599
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q R+H A+FF+ + + +I+ WMG F + +N+AK+AAR+G CFS+T A
Sbjct: 600 FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAG 659
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLA-MEVAQI-LKLDGSPPPSAYQIRYAGYK 589
P V E D++RNGY FSDG+G+I+ LA M ++++ +K PPSA+Q R G K
Sbjct: 660 CPVDVVKIE--DVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCK 717
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++A ++ + +R S KF + H LEI W++F LNRQ+I +LSTL + D+
Sbjct: 718 GMLAV-SSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQ 776
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML 707
+F +M L+ L + A L T I M+ GF+ EP L +L
Sbjct: 777 VFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVL 836
Query: 708 T----YELGELKECQCFIQVSESS-LENCFSKHG-------------------------- 736
T + L LKE + I V + + L C + G
Sbjct: 837 TLWRAWHLKYLKE-KARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPE 895
Query: 737 -----SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
SR KK +VI G ++A+NP L PGD+R++ AV+ P+L HL D +V PQ GDR
Sbjct: 896 IFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQTGDR 955
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TC 838
+ SG DLDGD Y V WD++L+P PM+ T +A+ L
Sbjct: 956 DIASMCSGGDLDGDDYIVIWDQDLLPKDWFR-EPMKYTSNKAQDLDRDVTVNDITSFFVT 1014
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
++ + L +I +AH+ AD E G +E CI LA+L + AVD KTG + +L+P+K
Sbjct: 1015 YMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEPRK 1074
Query: 899 YPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDTDLEVP 954
+P FME + + Y SNKILG+LY + E I +++ P D + ++EVP
Sbjct: 1075 WPHFMEKFNKPKDRIYHSNKILGQLYDAV-----ERIDFVPSLEM-PFDKRLLNCEIEVP 1128
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKH 1011
D A+N K YD + ++ Q+ + + EF IWS + N+ K + E +
Sbjct: 1129 D--DLLTFAKNLKGQYDDAMRRIMAQHEI-KTEF-EIWSTFVLGHANTSKDYKFHEEIGA 1184
Query: 1012 SYSAFRKEF-RQVFEKM 1027
+ R F +Q +EK+
Sbjct: 1185 ISATLRDTFKKQCYEKV 1201
>gi|391863075|gb|EIT72389.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1458
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 253/797 (31%), Positives = 389/797 (48%), Gaps = 109/797 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F++ + + + G L++ ++ F L V L+H+ S K+ V+ Y+ +
Sbjct: 441 LPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHV-SAKKQVY--YDPM 497
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
K IK + P + R ITP+ Y+ + D+ ADRF
Sbjct: 498 KIFDLKFIKGVTQAKIPPYCCYMHSAR---ITPSTIYYNTPTVDISNRVIRRFIEHADRF 554
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE L + I S + S +F R+K L++G + RRY
Sbjct: 555 LRVRFTDEKL---------------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYE 599
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q R+H A+FF+ + + +I+ WMG F + +N+AK+AAR+G CFS+T A
Sbjct: 600 FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAG 659
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLA-MEVAQI-LKLDGSPPPSAYQIRYAGYK 589
P V E D++RNGY FSDG+G+I+ LA M ++++ +K PPSA+Q R G K
Sbjct: 660 CPVDVVKIE--DVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCK 717
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++A ++ + +R S KF + H LEI W++F LNRQ+I +LSTL + D+
Sbjct: 718 GMLAV-SSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQ 776
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML 707
+F +M L+ L + A L T I M+ GF+ EP L +L
Sbjct: 777 VFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVL 836
Query: 708 T----YELGELKECQCFIQVSESS-LENCFSKHG-------------------------- 736
T + L LKE + I V + + L C + G
Sbjct: 837 TLWRAWHLKYLKE-KARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPE 895
Query: 737 -----SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
SR KK +VI G ++A+NP L PGD+R++ AV+ P+L HL D +V PQ GDR
Sbjct: 896 IFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQTGDR 955
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TC 838
+ SG DLDGD Y V WD++L+P PM+ T +A+ L
Sbjct: 956 DIASMCSGGDLDGDDYIVIWDQDLLPKDWFR-EPMKYTSNKAQDLDRDVTVNDITSFFVT 1014
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
++ + L +I +AH+ AD E G +E CI LA+L + AVD KTG + +L+P+K
Sbjct: 1015 YMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEPRK 1074
Query: 899 YPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDTDLEVP 954
+P FME + + Y SNKILG+LY + E I +++ P D + ++EVP
Sbjct: 1075 WPHFMEKFNKPKDRIYHSNKILGQLYDAV-----ERIDFVPSLEM-PFDKRLLNCEIEVP 1128
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKH 1011
D A+N K YD + ++ Q+ + + EF IWS + N+ K + E +
Sbjct: 1129 D--DLLTFAKNLKGQYDDAMRRIMAQHEI-KTEF-EIWSTFVLGHANTSKDYKFHEEIGA 1184
Query: 1012 SYSAFRKEF-RQVFEKM 1027
+ R F +Q +EK+
Sbjct: 1185 ISATLRDTFKKQCYEKV 1201
>gi|238505489|ref|XP_002383969.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
gi|220690083|gb|EED46433.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
Length = 1353
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 252/797 (31%), Positives = 390/797 (48%), Gaps = 109/797 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F++ + + + G L++ ++ F L V L+H+ S K+ V+ Y+ +
Sbjct: 336 LPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHV-SAKKQVY--YDPM 392
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
K IK + P + R ITP+ Y+ + D+ ADRF
Sbjct: 393 KIFDLKFIKGVTQAKIPPYCCYMHSAR---ITPSTIYYNTPTVDISNRVIRRFIEHADRF 449
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE L + I S + S +F R+K L++G + RRY
Sbjct: 450 LRVRFTDEKL---------------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYE 494
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q R+H A+FF+ + + +I+ WMG F + +N+AK+AAR+G CFS+T A
Sbjct: 495 FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAG 554
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLA-MEVAQI-LKLDGSPPPSAYQIRYAGYK 589
P V ++ D++RNGY FSDG+G+I+ LA M ++++ +K PPSA+Q R G K
Sbjct: 555 CPVDVV--KIEDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCK 612
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++A ++ + +R S KF + H LEI W++F LNRQ+I +LSTL + D+
Sbjct: 613 GMLAV-SSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQ 671
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML 707
+F +M L+ L + A L T I M+ GF+ EP L +L
Sbjct: 672 VFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVL 731
Query: 708 T----YELGELKECQCFIQVSESS-LENCFSKHG-------------------------- 736
T + L LKE + I V + + L C + G
Sbjct: 732 TLWRAWHLKYLKE-KARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPE 790
Query: 737 -----SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
SR KK +VI G ++A+NP L PGD+R++ AV+ P+L HL D +V PQ GDR
Sbjct: 791 IFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQTGDR 850
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TC 838
+ SG DLDGD Y V WD++L+P PM+ T +A+ L
Sbjct: 851 DIASMCSGGDLDGDDYIVIWDQDLLPKDWFR-EPMKYTSNKAQDLDRDVTVNDITSFFVT 909
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
++ + L +I +AH+ AD E G +E CI LA+L + AVD KTG + +L+P+K
Sbjct: 910 YMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEPRK 969
Query: 899 YPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDTDLEVP 954
+P FME + + Y SNKILG+LY + E I +++ P D + ++EVP
Sbjct: 970 WPHFMEKFNKPKDRIYHSNKILGQLYDAV-----ERIDFVPSLEM-PFDKRLLNCEIEVP 1023
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKH 1011
D A+N K YD + ++ Q+ + + EF IWS + N+ K + E +
Sbjct: 1024 D--DLLTFAKNLKGQYDDAMRRIMAQHEI-KTEF-EIWSTFVLGHANTSKDYKFHEEIGA 1079
Query: 1012 SYSAFRKEF-RQVFEKM 1027
+ R F +Q +EK+
Sbjct: 1080 ISATLRDTFKKQCYEKV 1096
>gi|407918335|gb|EKG11606.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1511
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 254/834 (30%), Positives = 396/834 (47%), Gaps = 132/834 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ FE+ + + + ILN+H ++ F + L +++ + L+ KR F+ +
Sbjct: 352 LEFEVRYQLEVCLSNNILNEHNVTREFVERLAQMDKKMAKSVLEAAMDKKRRFFEPMDIF 411
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVA-----------DRF 412
K L K L + P + R ITP+ + + +++ DRF
Sbjct: 412 K---LPLRKEAMLKQTPAHC---VYSRSANITPSTITFASPTMEISNRIIREYLRFSDRF 465
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F +E P K I S+ + T +F RV L +G + R Y
Sbjct: 466 LRVKFTEE--------------KPRGK-IRSSRDDKDTELFTRVWRTLRNGIAIGDRHYE 510
Query: 473 FLAFSSNQLRDHSAWFFSKV-------GETSVLDIKNWMGEFTA-KNIAKYAARMGLCFS 524
FLAF ++Q R+H A+FF+ + + DI+ MG+F + +A+YA+RMG CFS
Sbjct: 511 FLAFGNSQFREHGAYFFAPIEDDLCDENNITPSDIRMLMGDFDEIQEVARYASRMGQCFS 570
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSP-----PPS 579
+T + HE DI RNGY+F+DG+GKI+ LA+++AQ G P PPS
Sbjct: 571 TTREATSVKAHVSGHE--DIMRNGYIFTDGVGKISAALAVKIAQEF---GHPTAVEDPPS 625
Query: 580 AYQIRYAGYKGVVACWPAKDDGI-RMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
+Q R G KGV+A +K+ G + +R S KF + LEI W++F LNRQ+I
Sbjct: 626 VFQFRLGGCKGVLAV--SKELGADEIHIRRSQDKFPAPSEGLEIIKWSQFATATLNRQLI 683
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLT--ASCAEQGNTAAIMLSAGFK 696
+L V + +F S L + + VA +L + T A M+ GF
Sbjct: 684 IILDARGVPNGVFMKKLQDQLSDLKKAMTSEVVALRLLQRFVDSNQVSLTLAGMVLDGFM 743
Query: 697 PQTEPHLQGML----TYELGELKECQCFIQVSESS-----LENCFSKHGSRFAET--KKL 745
EP L +L T+ + LKE + + V E + L+ S HG ++E K L
Sbjct: 744 GIKEPFLMSVLHLWRTWSIKYLKE-KARLFVGEGAFLLGCLDETASLHGHFYSEQNWKSL 802
Query: 746 Q---------------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
Q +I G ++A+NP L PGDVR+++AV++P+LHHL + +V
Sbjct: 803 QTNLLPQIFVQVSDINHPGRYKIIEGVCIVARNPSLHPGDVRVVQAVNQPKLHHLKNVVV 862
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE------------ 832
FPQ GDR N SG DLDGD Y V WD+ LIP +K+ PM+ TP +
Sbjct: 863 FPQTGDRDIPNMCSGGDLDGDDYMVVWDKELIP--QKNYKPMDFTPPQKQTVEKVTMEHI 920
Query: 833 AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
K ++ + +LG I NAH+ AD + G + C+ LA++ +TAVD PK+G M
Sbjct: 921 TKFFVEYIKNDSLGVIANAHLAAADFEDEGVMSKRCLELARIHSTAVDYPKSGVAAIMDK 980
Query: 893 HLKPKKYPDFME-----IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP-VDIH 946
L P++YP FM+ +E + Y+S KILG+L+ +K EVD +P D
Sbjct: 981 RLAPRRYPHFMQNNFRNLENGRCYESKKILGQLFDAVK-----------EVDFDPQYDAP 1029
Query: 947 YDTDLEVPGSVDFTADARNQ--KCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRK 1001
+D+ + +++ AR K YD + L+ Q+++ + EF +WS + N +
Sbjct: 1030 FDSRILNAYNLEPATLARAGALKVLYDAAVRRLMAQHDI-QTEF-EVWSTFILKHNNEIR 1087
Query: 1002 QGELQERLKHSYSAFRKEFRQV-FEKMNSDFE-----LSDNEKNVLYEQKASAW 1049
LQE + R+ F+++ FE+ F D EK ++ A+
Sbjct: 1088 DYSLQEDFGRIWDGLRERFQKLCFEEAAGGFREGLYGTDDKEKRAALQETGRAF 1141
>gi|242812975|ref|XP_002486072.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218714411|gb|EED13834.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 1341
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 250/785 (31%), Positives = 377/785 (48%), Gaps = 121/785 (15%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
VR +TP+ YW S ++ ADRFLRV F DE +
Sbjct: 501 VRTATVTPSMIYWNTPSMEITNRVLRRYSEHADRFLRVRFKDEKFEGR------------ 548
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
I S +F R+K +++G L R+Y FLAF ++Q R+H A+FF+ +
Sbjct: 549 ---INSTHHDTMDEIFSRIKRTMTNGIVLGDRKYEFLAFGNSQFREHGAYFFASDAHVTA 605
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT----VEIPPTEVDHELPDIKRNGYVFS 552
+I+ WMGEF+ KN+AKYAAR+G CFS+T A VE+ +PD++R Y FS
Sbjct: 606 SNIRAWMGEFSDIKNVAKYAARLGQCFSTTRAINTCRVEL------KRIPDVERGPYTFS 659
Query: 553 DGIGKITPDLAMEVAQILKLDGS--PPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSM 610
DG+G+I+ LA Q L + + PPSAYQ R G KG++ + G + +R S
Sbjct: 660 DGVGRISRFLAQMTQQELNIRTADQEPPSAYQFRLGGCKGMLVL-SDEPRGREIEIRPSQ 718
Query: 611 KKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD 670
+KF + H LEI W++F LNRQ+I +LS+L + D++F M S L
Sbjct: 719 EKFPANHQGLEIIRWSQFSSATLNRQLIAVLSSLGIEDKVFHGKLQRMVSNLEEATHYDR 778
Query: 671 VAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGMLT----YELGELKE-------- 716
A +L T I ++S GF +P + ++T +++ LKE
Sbjct: 779 AAMHLLQKYIDPNEMTLVISKIVSDGFLQARDPFITSVITLWKAWQIKYLKEKAKITIED 838
Query: 717 CQCFIQVSES-------SLENCFSKHGSR---------------FAETKKLQVINGFVVI 754
C + V + S EN H SR A+ KK V+ G ++
Sbjct: 839 GACVLGVMDETATLKGFSYENVEKVHLSRDSKLDALPEIFLQVYRADEKKYGVVEGVCIL 898
Query: 755 AKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
A+NP L PGD+R++ AV+R EL HL D +V PQ GDR + SG DLDGD Y V WD++
Sbjct: 899 ARNPSLHPGDIRVVRAVNRSELAHLKDVVVLPQVGDRDIASMCSGGDLDGDDYLVIWDQD 958
Query: 815 LIPPSKKSCPPMECTPAEAKPL----------TCHVNHQ---NLGQICNAHVVHADRSEY 861
LI PS+ PM+ T + L T VN+ +L +I +AH+ AD E
Sbjct: 959 LI-PSQWFRTPMDYTAIKGVNLNRAVTVNDITTFFVNYMKNDSLPKIAHAHMAWADYLED 1017
Query: 862 GAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE---EYQTYKSNKILG 918
G CI LA+L + AVD KTG+ +P L+P+K+P FME + Q Y S KILG
Sbjct: 1018 GVESAKCIRLAQLHSNAVDYNKTGEPAYLPRDLRPRKWPHFMEKNYKPKDQIYHSEKILG 1077
Query: 919 RLYRQIKGAYDENISVSSEVDINP-VDIHYDTDLEVPGSVDFTAD----ARNQKCSYDGQ 973
+LY + VD +P D +D + + ++ T + + K YD
Sbjct: 1078 QLYDAV-----------DRVDFHPDFDRPFDKRV-LEAGIEVTDEILQFVKELKVDYDLS 1125
Query: 974 LNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFR-QVFEKMNS 1029
L ++ Q+ + R EF IWS + N K + E L A + F+ + + K+
Sbjct: 1126 LKRIMAQHEI-RTEF-EIWSTFVLGHANLSKDYKFHEELGGITKAIKDRFQGECYAKVGG 1183
Query: 1030 -DFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLA 1088
DF+ +Y + ++ VT E+ KK+ + + + ++ ++SFAW+ D L
Sbjct: 1184 RDFDRIAPVAVAIY--RVTSDEVVTAMGEFRKKNPE--AKPNPENLPMISFAWLFPDVLG 1239
Query: 1089 RIKIK 1093
R+ ++
Sbjct: 1240 RVALR 1244
>gi|119493033|ref|XP_001263772.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
gi|119411932|gb|EAW21875.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
Length = 1599
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 255/805 (31%), Positives = 385/805 (47%), Gaps = 111/805 (13%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R ITPT Y+ S D+ ADRFLRV F DE L
Sbjct: 665 MRSARITPTTIYYNTPSVDISNRVIRYYIEYADRFLRVRFTDEKL--------------- 709
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+ I S + VF R+K L++G + RRY FLAF ++Q R+H A+FF+ + +
Sbjct: 710 LGRINSTVDNTMDEVFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTA 769
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F +N+AK+AAR+G CFS+T A P ++ + D+ +NGY FSDG+G
Sbjct: 770 ANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAIAGC-PVQI-RLIDDVVQNGYTFSDGVG 827
Query: 557 KITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA A LK+ PPSA+Q R G KG++ P + +R S KF
Sbjct: 828 RISKFLAQMAASELKIKTPSDDPPSAFQFRLGGCKGMLTVSPEAQRQ-EVHIRKSQYKFA 886
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H LEI W+++ LNRQ+I +LS+L + D +F +M LN + + A
Sbjct: 887 AVHNGLEIIRWSQYSMATLNRQLIIVLSSLGIQDRVFHDKLRAMLQSLNEAMESDSQALC 946
Query: 675 VLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSL 728
L T + M+ GF+ EP + ++ + L LKE + ++L
Sbjct: 947 WLKKYVDPNQMTLVVSQMVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANL 1006
Query: 729 ENCFSKHG-----------------SRFA------------ETKKLQVINGFVVIAKNPC 759
C + G + A +T K +VI G ++A+NP
Sbjct: 1007 LGCMDETGILRGYSERVPAKGASDEEKLAALPEIFVQIHRPDTGKCEVIEGVCILARNPS 1066
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
L PGD+R++ AV+ P+L HL D +VFPQ GDR + SG DLDGD Y V WD++L+P
Sbjct: 1067 LHPGDIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLVPED 1126
Query: 820 --KKSCPPMECTPAEAKPL--TCHVNHQN-----------LGQICNAHVVHADRSEYGAF 864
+K+ M+ T +A+ L VNH L +I +AH+ ADR E G
Sbjct: 1127 WFRKA---MKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVN 1183
Query: 865 DENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE---EYQTYKSNKILGRLY 921
+E CI LA+L + AVD KTGK M L+PK +P FME + + + YKSNKILG+LY
Sbjct: 1184 EEKCIRLAQLHSDAVDYNKTGKPANMTRSLQPKVWPHFMEKKHKPKERIYKSNKILGQLY 1243
Query: 922 RQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY 981
+ E I +++ P D T + + D AR+ K YD ++ ++ Q+
Sbjct: 1244 DAV-----ERIDFVPSLEM-PFDERILT-CSLGVNDDLVQFARDLKADYDAAMHRIMAQH 1296
Query: 982 NVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFR-QVFEKMNS-DFE---- 1032
+ + EF +WS + N K + E L S+ R +R + +EK+ FE
Sbjct: 1297 EI-KTEF-EVWSTFVLSHSNMSKDYKFHEELGLISSSLRDMYRKKCYEKVGGRTFELLAP 1354
Query: 1033 LSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSAR--SVVLLSFAWIANDYLARI 1090
L+ V +E+ SA + +R L + + R + +SF WI ++ L +I
Sbjct: 1355 LAVAMYRVTHEEMTSA---LVKYRAENPPDGKLFHKPTPRIDHLPFISFPWILHNILGKI 1411
Query: 1091 KIKCQEMANIGKSKPVNNLARYVAD 1115
+ E + V+ LA D
Sbjct: 1412 ALGHYEEPEPDPAPTVSALATASVD 1436
>gi|326471540|gb|EGD95549.1| RNA-directed RNA polymerase [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 230/713 (32%), Positives = 342/713 (47%), Gaps = 118/713 (16%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R +TP+ Y+ + D AD+FLRV F DE + + S Y
Sbjct: 616 MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADKFLRVRFTDEKYE---GRINSTY---- 668
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+N + VF RVK +++G + R Y FLAF ++Q R+H A+FF+ + +
Sbjct: 669 -----NNCMDE---VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTA 720
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F+ K +AK+AAR+G CFS+T A P T E+ +++RNGY+FSDG+G
Sbjct: 721 ANIRAWMGHFSDIKIVAKHAARLGRCFSTTRAVTGCPVTV--REIDEVERNGYIFSDGVG 778
Query: 557 KITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA + KL PPS +Q R G KG++ P + +R S KF
Sbjct: 779 RISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRR-EVHIRKSQYKFA 837
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H LEI W++F LNRQ+I +LS L VSDEIF M + + + A
Sbjct: 838 AIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMS 897
Query: 675 VLTASCAEQGNT--AAIMLSAGFKPQTEPHLQGML----TYELGELKE-CQCFI------ 721
+L T A M+ GF+ +P ++ +L +++ LKE + FI
Sbjct: 898 MLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 957
Query: 722 --------------QVSESSLENCFSKHGSRFAET----------KKLQVINGFVVIAKN 757
+ S+E + + E KK +VI G ++A+N
Sbjct: 958 FGCLDETATLKGYHEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 1017
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R++ AVD P LHHL D +VFPQ GDR + SG DLDGD Y V WD++L+P
Sbjct: 1018 PSLHPGDIRVVRAVDVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 1077
Query: 818 -PSKKSCPPMECTPAEAKPLT-------------CHVNHQNLGQICNAHVVHADRSEYGA 863
P PM+ T + A+ LT ++ + L QI +AH+ AD E G
Sbjct: 1078 LPKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 1137
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ----TYKSNKILGR 919
DE CI LA+L + AVD K+G M L P+K+P FME ++Y+ Y+S KILG+
Sbjct: 1138 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFME-KKYKPKEAQYQSKKILGQ 1196
Query: 920 LYR---------QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSY 970
+Y +++ +DE I + D+ V S D A+ K Y
Sbjct: 1197 IYDIVERVEFRPKLEAPFDERI--------------LNCDISV--SEDMVLAAKKLKALY 1240
Query: 971 DGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEF 1020
D + ++ Q+ + + EF +WS + N K + E L SA R F
Sbjct: 1241 DADMRRIMAQHEI-KTEF-EVWSTFVLGHANMSKDYKFHEELGQISSALRDRF 1291
>gi|342879234|gb|EGU80489.1| hypothetical protein FOXB_08949 [Fusarium oxysporum Fo5176]
Length = 1391
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 264/860 (30%), Positives = 414/860 (48%), Gaps = 116/860 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ FEI + + + +G LN+H + F + L L+ + + V D L
Sbjct: 396 LPFEIRYQLEVCLSRGYLNEHMIGREFLERLANMKPAKARLCLESVADNAQVVIDPMAIL 455
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLR--VTFMDEG 421
++ Q + + ++ P + +R+ VITPT + + ++++R +R + D
Sbjct: 456 EESQ--IDGSIIMSRIPSHC---CLIRKAVITPTTIRYTTPTVEMSNRVMRRYKHYEDRF 510
Query: 422 LQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQL 481
L+ + + KD Q ++KRV + G + R Y FLAF ++QL
Sbjct: 511 LKIQFTEEMEKGRIAVNKD-------QNDEIYKRVLRSMYKGVRIGDRFYEFLAFGNSQL 563
Query: 482 RDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSST---HATVEIPPTEV 537
R + A+FF S DI+ WMG+F+ K +AKYAAR+G CFS+T HA + P T+
Sbjct: 564 RVNGAYFFCPTEHLSCDDIRRWMGQFSHIKVVAKYAARLGQCFSTTRELHA-ISAPATQ- 621
Query: 538 DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPA 597
++PDI+RNGY F+DGIGKI+ LA +++ + LD PSA+Q R G KGV+A WP
Sbjct: 622 --QIPDIERNGYCFTDGIGKISSFLAQLISEDMILDVVARPSAFQFRMGGCKGVLAIWPN 679
Query: 598 KDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQAS 657
+ + +R S KKF+S LEI LNRQ IT+L L V F +
Sbjct: 680 DTKVMEVHIRESQKKFESDSKGLEIIRSAAMATATLNRQTITILECLGVPIASFTNLLDH 739
Query: 658 MASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQ--TEPHLQGML----TYEL 711
L + +DVA ++LT E N + +L AGFK EP + +L ++ L
Sbjct: 740 QLRSYELAMEDNDVAIDMLTKFVDE--NNISDLLRAGFKTDDLQEPFVVNVLKLWRSWSL 797
Query: 712 GELKECQCFIQVSESS-LENCFSKHGS---RFAETK------------------------ 743
LKE + IQV +S+ + C + G+ +ET+
Sbjct: 798 KLLKE-KARIQVQKSAFVLGCVDETGTLRGHSSETEGSEDKATDRLPQIFIQLSDATHYN 856
Query: 744 KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
K QVI+G +I +NP L PGD+R++EAVD P LHHL D +VFP GD+P N SG DLD
Sbjct: 857 KTQVISGVCIIGRNPSLHPGDIRVVEAVDCPALHHLRDVVVFPSTGDQPVPNMLSGGDLD 916
Query: 804 GDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC---------------HVNHQNLGQI 848
GD ++V W+ LI P + + PPM KP+ ++ + L I
Sbjct: 917 GDDFFVIWEPTLI-PRRWNYPPMNYL--APKPIELDRDVTVDDLRNFFVKYLKNDKLPLI 973
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY 908
+H+ +D + G C+ LA+L + AVD PKTG + +P+K+P FM E+
Sbjct: 974 ATSHLAFSD--DLGPMSPKCLELAELHSKAVDYPKTGDPAVLRRDQQPRKWPHFM--EKK 1029
Query: 909 QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDL--EVPGSVDFTADARN 965
+Y S K LG ++ ++KG +V +P+ D +D + + + D AR
Sbjct: 1030 NSYTSRKALGVIFDKVKG---------KQVKFDPIWDSPFDQRIIKKFELNRDTLKSARK 1080
Query: 966 QKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFRQ 1022
K YD + LL Q+ + + EF +W+ M K ++QE L+ Y+ + FRQ
Sbjct: 1081 IKTQYDTSVRRLLSQHAL-KTEFE-LWTGFAMSKPAVGSDYKVQEELRREYNNLKAAFRQ 1138
Query: 1023 VFEKMNSDFELSDNEKNVLYEQKASAWYQVT----------YHREWVKKSLDLLE--QGS 1070
+ D S N + + E +A Y+VT +HR + + LL+ +
Sbjct: 1139 ----LCIDTAGSKNAEKL--EPFVAAMYKVTDEEMKIALYEHHRGVINDAGTLLQPRKLE 1192
Query: 1071 ARSVVLLSFAWIANDYLARI 1090
+S+ L+SF WI + + R+
Sbjct: 1193 PKSMPLISFPWIFHKEMCRM 1212
>gi|302918417|ref|XP_003052653.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
gi|256733593|gb|EEU46940.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
Length = 1250
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 266/876 (30%), Positives = 414/876 (47%), Gaps = 133/876 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFD-LLRCQPREVIVTALKHIYSYKRPVFDAYEK 362
+ FEI + + + + ILN+H ++ F + L PR+ + L+++ PV +
Sbjct: 340 LPFEIRYQLEVCISRDILNEHTITLEFLEKLASMNPRKARLY-LEYLADQGEPVQNPM-- 396
Query: 363 LKDVQECLIKNPKLNEGPKNIDDI----AEVRRLVITPTKAYW-----------FLESKD 407
+ +NP+ E I I A VR++V+TPT + + K
Sbjct: 397 ------SIFQNPEA-EAFSPIARIPQYCALVRKVVVTPTTIRFNSPAVEMSNRVMRQYKH 449
Query: 408 VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
+ DRFLR+ F++E T A I KD Q ++KRV + G +
Sbjct: 450 IQDRFLRIQFVEELENTRIA---------INKD-------QNDEIYKRVLRTMYQGIRIG 493
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSST 526
R Y FLAF S+QLR + A+FF TS DI+ WMG+F+ K +AKYAAR+G CFS+T
Sbjct: 494 DRVYEFLAFGSSQLRVNGAYFFCPTEHTSCDDIRKWMGQFSHIKVVAKYAARLGQCFSTT 553
Query: 527 HATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA 586
I + E+PDI+RNG+ FSDG+GKI+P +A V + + LD PSA+Q R
Sbjct: 554 REVRGISSPAI-REIPDIERNGHCFSDGVGKISPFVAQLVNEDMALDIFDKPSAFQFRMG 612
Query: 587 GYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNV 646
G KGV+ WP G+ + +R S KKF++ LEI F LNRQ I +L +L V
Sbjct: 613 GCKGVLTVWPDA-KGMEVHVRESQKKFEADSKGLEIIRCAGFATATLNRQTIIILESLGV 671
Query: 647 SDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQ--TEPH 702
+ F + + + VA E+L E I +L A FK EP
Sbjct: 672 PIKAFTDLLDQQLGSYEQAMQDNGVAIEMLAKFVDEHQTNLVIAELLKAEFKTDELREPF 731
Query: 703 LQGMLT----YELGELKECQCFIQVSESS-LENCFSKHGSRFAETK-------------- 743
+ +L+ + L LKE + IQV +S+ + C + + +K
Sbjct: 732 VINVLSLWRAWSLKILKE-KARIQVEKSAFVLGCVDETETLRGHSKDSEGSKPKDVNMLP 790
Query: 744 -------------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD 790
K +I G ++ +NP L PGD+R++EAVD +L H+ D +VFP GD
Sbjct: 791 QIFLQITDSRNYNKTHIIQGVCIVGRNPSLHPGDIRVVEAVDCSKLRHIKDVVVFPATGD 850
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN--------- 841
RP N SG DLDGD ++V W+ +LIP + PM+ + K L VN
Sbjct: 851 RPVPNMLSGGDLDGDDFFVIWEPSLIPKTWNYS-PMDYAAPKPKELDRDVNVDDLRNFFV 909
Query: 842 ----HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
+ L I +H+ AD + G C+ LA+L + AVD PKTG+ T+ +P+
Sbjct: 910 KYLKNDKLPLIATSHLGFAD--QLGPMSPKCLELAELHSKAVDYPKTGEPATLRRDQQPR 967
Query: 898 KYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDLEVPGS 956
K+P FME +++ Y S+K LG + YD+ ++ + + NP+ D +D +
Sbjct: 968 KWPHFMEKKQF--YHSDKALGVI-------YDKVVNKAKVIQFNPIWDSPFDDRITKKYK 1018
Query: 957 VD--FTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKH 1011
+D AR K YD + LL Q+++ + EF +W+ M K +LQE L H
Sbjct: 1019 LDNELLKAARKVKSQYDTAVRRLLSQHDL-KTEF-ELWTGFAMSKPAVGTDYKLQESLSH 1076
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVT----------YHREWVKK 1061
Y A + FR + +E + + ++ +A Y VT +HR +
Sbjct: 1077 EYDALKYRFRDIC------YEAAGGKLTDQVDRFVAAMYTVTEEETKIALFEHHRGPIND 1130
Query: 1062 SLDLLE--QGSARSVVLLSFAWIANDYLARIKIKCQ 1095
+ +L+ + +S+ L+SF WI + + R+ + +
Sbjct: 1131 AGHILQPRKLEPKSMPLISFPWIFHWVMCRLALGAK 1166
>gi|296804254|ref|XP_002842979.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
gi|238845581|gb|EEQ35243.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
Length = 1473
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 237/793 (29%), Positives = 374/793 (47%), Gaps = 114/793 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+S+ + + + + G+L+++ ++ F + L+ + L+H+ S ++ V+ K+
Sbjct: 405 ISYTVRYQLEVCISHGLLSEYTITKEFAERLQSLGEDDARDLLEHV-SREKAVYHDPMKI 463
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
D++ + PKN +R +TP+ Y+ + D ADRF
Sbjct: 464 FDIE--FFSGVTGRKIPKNC---CYMRSATVTPSTIYFHTPTVDTSNRVLRYYIEHADRF 518
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE + I S+ + +F RVK +++G + R Y
Sbjct: 519 LRVRFADEKYEGR---------------INSSYNNCMDELFTRVKRTMTNGITVGDRHYE 563
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q R+H A+FF+ + + +I+ WMG F+ K +AK+AAR+G CFS+T A
Sbjct: 564 FLAFGNSQFREHGAYFFASLPTLTAANIRAWMGHFSDIKIVAKHAARLGQCFSATKAVTG 623
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYK 589
P + E+ +I+RNGY+FSDG+G+I+ LA + L + PPS +Q R G K
Sbjct: 624 CP--VIVQEIDEIERNGYIFSDGVGRISNFLAQMIRTELNIQTPSDEPPSVFQFRLGGCK 681
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++ P + +R S KF + H LE+ ++F LNRQ+I +LS L V+DE
Sbjct: 682 GILTVSPEAQHR-EVHIRKSQYKFAAVHNGLEVIRHSKFAGAHLNRQLIMVLSALGVTDE 740
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT--AAIMLSAGFKPQTEPHLQGML 707
IF + + + A +L T A M++ GF+ EP ++ +L
Sbjct: 741 IFLKKLHLVLEDMQDAMTNESKAITLLQKRVDPNQMTFLLAHMVNDGFQASCEPFVKSLL 800
Query: 708 ----TYELGELKE--------CQCFI-----------------QVSESSLENCFSKHGSR 738
+++ LKE C + S++++E
Sbjct: 801 ELWRAWDIKYLKEKAKIHIEKGACLLGCIDETATLKGYYEKERPASDATIEERLDNLPEI 860
Query: 739 FA------ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRP 792
F E K ++I G ++A+NP L PGD+R++ AV+ P LHHL D +VFPQ GDR
Sbjct: 861 FVQVFDTEEETKYKIIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRD 920
Query: 793 HTNEASGSDLDGDLYYVTWDENLIP-PSKKSCPPMECTPAEAKPLT-------------C 838
++ SG DLDGD Y V WD +LIP P C PM+ T + A+ LT
Sbjct: 921 VSSTCSGGDLDGDDYIVIWDPDLIPLPKDWFCEPMDYTASNAQSLTRDVTVNDITSFFVT 980
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
++ + +L QI ++H+ AD E G DE C+ LA+L + AVD KTG M L P+K
Sbjct: 981 YMKNDHLPQIAHSHLAFADYVEDGVNDERCMQLAQLHSAAVDYNKTGIPANMSRDLIPRK 1040
Query: 899 YPDFMEI----EEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP-VDIHYDTDL-- 951
+P FME +E Q Y S KILG++Y + V+ P ++ +D +
Sbjct: 1041 WPHFMEKNHKPKEAQYY-SRKILGQIY-----------DIVERVEFRPKLEAPFDKRILN 1088
Query: 952 -EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQE 1007
+P S D A+ K YD + ++ Q+ V + EF +WS + N K E
Sbjct: 1089 SHIPVSDDLIQIAKKMKVLYDADMRRIMAQHEV-KTEFE-VWSTFALGHANMTKDYRFHE 1146
Query: 1008 RLKHSYSAFRKEF 1020
L S R F
Sbjct: 1147 ELGQISSGLRNRF 1159
>gi|389646751|ref|XP_003721007.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
gi|351638399|gb|EHA46264.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
Length = 1407
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 243/782 (31%), Positives = 379/782 (48%), Gaps = 113/782 (14%)
Query: 389 VRRLVITPTKAYW---FLESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPI 437
R++ +TP+ Y +E+ + DRFLRV F DE P
Sbjct: 456 TRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDE--------------LPT 501
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+ N +F RV +L +G ++ R Y FLAF S+Q+R++S +FF G+ +
Sbjct: 502 GRLHAPNDLGADDEIFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTC 561
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT--VEIPPTEVDHELPDIKRNGYVFSDG 554
I+ WMG F+ +N+ KYAAR+G CFS+T + V +P + +PDI++NGY F+DG
Sbjct: 562 DSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKT---IPDIEKNGYCFTDG 618
Query: 555 IGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+GKI+ A+ +++ LKLD PSA+Q R G KGV+ W G + +R S KF+
Sbjct: 619 VGKISSLWAVVISENLKLDYI--PSAFQFRMGGCKGVLVVW-EDVKGQEIHIRPSQLKFE 675
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H+ LE+ + F LNRQ I++L++L V +E+F ++ A +K N + + A
Sbjct: 676 TDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMT 735
Query: 675 VLTASCAEQ--GNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSL 728
+LT E NT A ++ AGF EP + ML T+ + LKE + + +
Sbjct: 736 LLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFV 795
Query: 729 ENCFSK----HGS------------RFAETKKL---------------QVINGFVVIAKN 757
C + HG R KL +VI G ++ +N
Sbjct: 796 LGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRN 855
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R+++A+D P+L H+ D +VF Q GDR SG DLDGD ++V WDE L+P
Sbjct: 856 PSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLP 915
Query: 818 -PSKKSCPPMECTPAEAKPLTCHVNHQNLGQ-------------ICNAHVVHADRSEYGA 863
PS+++ P P A+ L V +L Q I +AH+ AD+ YGA
Sbjct: 916 LPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQADK--YGA 973
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQ 923
DE C+ LA L + AVD PKTG + L P ++P FME + Y S KILG+LY Q
Sbjct: 974 KDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFME-KARGRYHSRKILGKLYDQ 1032
Query: 924 IKGAYDENISVSSEVDINPVDIHYDTDLEVPGSV--DFTADARNQKCSYDGQLNGLLGQY 981
+K N + E+ + + +L G + +AR K YD + ++GQ+
Sbjct: 1033 VKPV---NFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQH 1089
Query: 982 NVNRKEFRHIWSMPKYNSRKQG---ELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEK 1038
+ EF ++S +SR+ G +L E + + + FR EK + E
Sbjct: 1090 EIA-TEF-EVFSAFVLSSRRVGSQYKLGEIVGQQSATLKTVFR---EKCIAALETVSGRT 1144
Query: 1039 NV------LYEQKASAWYQVTYHREWVKKSLDLLE----QGSARSVVLLSFAWIANDYLA 1088
+ + A Y+VT E +K +L + + + +S+ L++F WI + L
Sbjct: 1145 GIKPRDIEAFGPFVVAMYKVT--DEEIKIALHECKTRGVKANPKSMPLITFPWIFDQILV 1202
Query: 1089 RI 1090
++
Sbjct: 1203 QL 1204
>gi|440466934|gb|ELQ36175.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae Y34]
gi|440478755|gb|ELQ59556.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae P131]
Length = 1977
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 243/782 (31%), Positives = 379/782 (48%), Gaps = 113/782 (14%)
Query: 389 VRRLVITPTKAYW---FLESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPI 437
R++ +TP+ Y +E+ + DRFLRV F DE P
Sbjct: 1026 TRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDE--------------LPT 1071
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+ N +F RV +L +G ++ R Y FLAF S+Q+R++S +FF G+ +
Sbjct: 1072 GRLHAPNDLGADDEIFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTC 1131
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT--VEIPPTEVDHELPDIKRNGYVFSDG 554
I+ WMG F+ +N+ KYAAR+G CFS+T + V +P + +PDI++NGY F+DG
Sbjct: 1132 DSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKT---IPDIEKNGYCFTDG 1188
Query: 555 IGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+GKI+ A+ +++ LKLD PSA+Q R G KGV+ W G + +R S KF+
Sbjct: 1189 VGKISSLWAVVISENLKLDYI--PSAFQFRMGGCKGVLVVW-EDVKGQEIHIRPSQLKFE 1245
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H+ LE+ + F LNRQ I++L++L V +E+F ++ A +K N + + A
Sbjct: 1246 TDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMT 1305
Query: 675 VLTASCAEQ--GNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSL 728
+LT E NT A ++ AGF EP + ML T+ + LKE + + +
Sbjct: 1306 LLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFV 1365
Query: 729 ENCFSK----HGS------------RFAETKKL---------------QVINGFVVIAKN 757
C + HG R KL +VI G ++ +N
Sbjct: 1366 LGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRN 1425
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R+++A+D P+L H+ D +VF Q GDR SG DLDGD ++V WDE L+P
Sbjct: 1426 PSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLP 1485
Query: 818 -PSKKSCPPMECTPAEAKPLTCHVNHQNLGQ-------------ICNAHVVHADRSEYGA 863
PS+++ P P A+ L V +L Q I +AH+ AD+ YGA
Sbjct: 1486 LPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQADK--YGA 1543
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQ 923
DE C+ LA L + AVD PKTG + L P ++P FME + Y S KILG+LY Q
Sbjct: 1544 KDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFME-KARGRYHSRKILGKLYDQ 1602
Query: 924 IKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVD--FTADARNQKCSYDGQLNGLLGQY 981
+K N + E+ + + +L G + +AR K YD + ++GQ+
Sbjct: 1603 VKPV---NFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQH 1659
Query: 982 NVNRKEFRHIWSMPKYNSRKQG---ELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEK 1038
+ EF ++S +SR+ G +L E + + + FR EK + E
Sbjct: 1660 EIA-TEF-EVFSAFVLSSRRVGSQYKLGEIVGQQSATLKTVFR---EKCIAALETVSGRT 1714
Query: 1039 NV------LYEQKASAWYQVTYHREWVKKSLDLLE----QGSARSVVLLSFAWIANDYLA 1088
+ + A Y+VT E +K +L + + + +S+ L++F WI + L
Sbjct: 1715 GIKPRDIEAFGPFVVAMYKVT--DEEIKIALHECKTRGVKANPKSMPLITFPWIFDQILV 1772
Query: 1089 RI 1090
++
Sbjct: 1773 QL 1774
>gi|392864142|gb|EAS35051.2| RNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1403
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 239/796 (30%), Positives = 367/796 (46%), Gaps = 115/796 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLL----RCQPREVI--VTALKHIYSYKRPVF 357
+ F + + + + G+LN++ + F L + RE++ V + KH+Y + +F
Sbjct: 371 LPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASEKHVYYDPKKIF 430
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV--------- 408
D +K PK +R +TP+ Y+ S D+
Sbjct: 431 DI---------LFVKPATSRRIPKYC---CYMRTARVTPSTVYFGTPSVDITNRVIRHYI 478
Query: 409 --ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
ADRFLRV F DE + ++ +N+ + VF RVK + +G L
Sbjct: 479 EYADRFLRVRFTDEKFEGR------------IQPSHNNTMDE---VFTRVKRTMMNGITL 523
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
R Y FLAF ++Q R+H A+FF+ + + +I+ WMG F+ K IA++AAR+G CFS+
Sbjct: 524 GDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFST 583
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPPPSAYQI 583
T A P ++ E+ DI+RNGY FSDG+G+I+ LA V K+ PPS +Q
Sbjct: 584 TRAVTGC-PVQI-REIEDIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVFQF 641
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KG++ P ++ +R S KF + H LE+ + F LNRQ+I +LS+
Sbjct: 642 RLGGCKGILTVSPEAQRQ-QVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSS 700
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEP 701
L V DE+F M L L + + A +L T + M+ GF+ EP
Sbjct: 701 LEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEP 760
Query: 702 HLQGML----TYELGELKECQCFIQVSESSLENCFSKHG--------------------- 736
+ +L +++ LKE I + L C + G
Sbjct: 761 FVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNIPSKDASYEERL 820
Query: 737 ----------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
SR K ++I G +IA+NP L PGD+R+++AV+ P LHHL D +VFP
Sbjct: 821 ACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHLRDVIVFP 880
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT--------- 837
Q GDR + SG DLDGD Y V WD++L+P P +A L+
Sbjct: 881 QTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLSRDVTVNDIT 940
Query: 838 ----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
++ + L QI ++H+ AD E G D CI LA+L + AVD KTG M
Sbjct: 941 SFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKTGIPAKMTKD 1000
Query: 894 LKPKKYPDFMEIEEY---QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTD 950
L P+K+P FME + Y S KILG+LY + E ++ +++ D ++
Sbjct: 1001 LAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIV-----ERVNYRPKLEAPFDDRILNSG 1055
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQE 1007
+EV + D A A K YD + ++ Q+ + + EF +WS + N K + E
Sbjct: 1056 IEV--NDDLLAVAAELKVLYDADMCRIMAQHEI-KTEF-EVWSTFVLSHSNMSKDYKFHE 1111
Query: 1008 RLKHSYSAFRKEFRQV 1023
+ A R+ FR +
Sbjct: 1112 EIGQISCALRERFRNL 1127
>gi|86196450|gb|EAQ71088.1| hypothetical protein MGCH7_ch7g495 [Magnaporthe oryzae 70-15]
Length = 1952
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 243/782 (31%), Positives = 379/782 (48%), Gaps = 113/782 (14%)
Query: 389 VRRLVITPTKAYW---FLESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPI 437
R++ +TP+ Y +E+ + DRFLRV F DE P
Sbjct: 1001 TRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDE--------------LPT 1046
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+ N +F RV +L +G ++ R Y FLAF S+Q+R++S +FF G+ +
Sbjct: 1047 GRLHAPNDLGADDEIFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTC 1106
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT--VEIPPTEVDHELPDIKRNGYVFSDG 554
I+ WMG F+ +N+ KYAAR+G CFS+T + V +P + +PDI++NGY F+DG
Sbjct: 1107 DSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKT---IPDIEKNGYCFTDG 1163
Query: 555 IGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+GKI+ A+ +++ LKLD PSA+Q R G KGV+ W G + +R S KF+
Sbjct: 1164 VGKISSLWAVVISENLKLDYI--PSAFQFRMGGCKGVLVVW-EDVKGQEIHIRPSQLKFE 1220
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H+ LE+ + F LNRQ I++L++L V +E+F ++ A +K N + + A
Sbjct: 1221 TDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMT 1280
Query: 675 VLTASCAEQ--GNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSL 728
+LT E NT A ++ AGF EP + ML T+ + LKE + + +
Sbjct: 1281 LLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFV 1340
Query: 729 ENCFSK----HGS------------RFAETKKL---------------QVINGFVVIAKN 757
C + HG R KL +VI G ++ +N
Sbjct: 1341 LGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRN 1400
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R+++A+D P+L H+ D +VF Q GDR SG DLDGD ++V WDE L+P
Sbjct: 1401 PSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLP 1460
Query: 818 -PSKKSCPPMECTPAEAKPLTCHVNHQNLGQ-------------ICNAHVVHADRSEYGA 863
PS+++ P P A+ L V +L Q I +AH+ AD+ YGA
Sbjct: 1461 LPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQADK--YGA 1518
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQ 923
DE C+ LA L + AVD PKTG + L P ++P FME + Y S KILG+LY Q
Sbjct: 1519 KDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFME-KARGRYHSRKILGKLYDQ 1577
Query: 924 IKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVD--FTADARNQKCSYDGQLNGLLGQY 981
+K N + E+ + + +L G + +AR K YD + ++GQ+
Sbjct: 1578 VKPV---NFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQH 1634
Query: 982 NVNRKEFRHIWSMPKYNSRKQG---ELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEK 1038
+ EF ++S +SR+ G +L E + + + FR EK + E
Sbjct: 1635 EIA-TEF-EVFSAFVLSSRRVGSQYKLGEIVGQQSATLKTVFR---EKCIAALETVSGRT 1689
Query: 1039 NV------LYEQKASAWYQVTYHREWVKKSLDLLE----QGSARSVVLLSFAWIANDYLA 1088
+ + A Y+VT E +K +L + + + +S+ L++F WI + L
Sbjct: 1690 GIKPRDIEAFGPFVVAMYKVT--DEEIKIALHECKTRGVKANPKSMPLITFPWIFDQILV 1747
Query: 1089 RI 1090
++
Sbjct: 1748 QL 1749
>gi|302505092|ref|XP_003014767.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
gi|291178073|gb|EFE33864.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
Length = 1296
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 229/713 (32%), Positives = 342/713 (47%), Gaps = 118/713 (16%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R +TP+ Y+ + D ADRFLRV F DE + + S Y
Sbjct: 306 MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYE---GRINSTY---- 358
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+N + VF RVK +++G + R Y FLAF ++Q R+H A+FF+ + +
Sbjct: 359 -----NNCMDE---VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTA 410
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F+ K +AK+AAR+G CFS+T A P T E+ +++RNGY+FSDG+G
Sbjct: 411 ANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTV--REIDEVERNGYIFSDGVG 468
Query: 557 KITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA + KL PPS +Q R G KG++ P + +R S KF
Sbjct: 469 RISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRR-EVHIRKSQYKFA 527
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H LEI W++F LNRQ+I +LS L VSD IF M L + + A
Sbjct: 528 AIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDNIFIEKLRLMLEDLEQAMTSETKAMS 587
Query: 675 VLTASCAEQGNT--AAIMLSAGFKPQTEPHLQGML----TYELGELKE-CQCFI------ 721
+L T A M+ GF+ +P ++ +L +++ LKE + FI
Sbjct: 588 MLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 647
Query: 722 --------------QVSESSLENCFSKHGSRFAET----------KKLQVINGFVVIAKN 757
+ S+E + + E KK +VI G ++A+N
Sbjct: 648 FGCLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 707
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R++ AV+ P LHHL D +VFPQ GDR + SG DLDGD Y V WD++L+P
Sbjct: 708 PSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 767
Query: 818 -PSKKSCPPMECTPAEAKPLT-------------CHVNHQNLGQICNAHVVHADRSEYGA 863
P PM+ T + A+ LT ++ + L QI +AH+ AD E G
Sbjct: 768 LPKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 827
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ----TYKSNKILGR 919
DE CI LA+L + AVD K+G M L P+K+P FME ++Y+ Y+S KILG+
Sbjct: 828 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFME-KKYKPKEAQYQSKKILGQ 886
Query: 920 LYR---------QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSY 970
+Y +++ +DE I + D+ V S + A+ K Y
Sbjct: 887 IYDIVERVEFRPKLEAPFDERI--------------LNCDISV--SEEMVLAAKKLKGLY 930
Query: 971 DGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEF 1020
D + ++ Q+ + + EF +WS + N K + E L SA R+ F
Sbjct: 931 DADMRRIMAQHEI-KTEF-EVWSTFVLGHANMSKDYKFHEELGQISSALRERF 981
>gi|340975703|gb|EGS22818.1| RNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1626
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 259/874 (29%), Positives = 401/874 (45%), Gaps = 123/874 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR--CQPREVIVTALKHIYSYKRPVFDAYE 361
+ F+I + + + +G+L ++ ++ F D L +P + V+ + I Y D +
Sbjct: 485 LPFDIRYQLEVCLSRGVLCEYNITQEFLDKLLELSKPDGMEVSRARLILEY---AADQGK 541
Query: 362 KLKDVQECLIKNPKLNEGPKNI---DDIAEVRRLVITPTKAYWFLESKDVADR------- 411
++ D L+ P + A VR++ ITPT+ Y+ + + +R
Sbjct: 542 RIWDPMSLFSDQAALSYCPTTLHIPSHCALVRKVTITPTRIYFSTPTVETTNRVVRHYGR 601
Query: 412 ----FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
F+RV F DE M + S Y ++ V+ RV +L G +
Sbjct: 602 FRDYFIRVQFTDE---VMEGRIRSSYT------------DREDNVYARVFRVLRHGIRMG 646
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKV----GETSVLDIKNWMGEFT-AKNIAKYAARMGLC 522
+ FLA+ ++Q+R+ ++FF + G + I+ WMG F+ K+IAK AAR+G C
Sbjct: 647 KWHWKFLAYGNSQIRECGSFFFCEPEEAHGTITCDSIREWMGRFSHIKSIAKLAARLGQC 706
Query: 523 FSSTHATVEI-PPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAY 581
FS+T I PT + + D++RNGY F+DG+GKI+P LA +A+ K+ P PSA+
Sbjct: 707 FSTTRPLPGITAPTIIKTQ--DVERNGYCFTDGVGKISPLLAFFIAEDWKV--YPTPSAF 762
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
Q R G KGV+ WP G + +R S +KF + LEI + F LNRQ IT+L
Sbjct: 763 QFRMGGCKGVLVTWPDAK-GTEVHIRPSQEKFSAEFNGLEIIRCSHFSCATLNRQTITIL 821
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQT 699
S L V +F + + + + D A ++LT E T + M+ GF
Sbjct: 822 SCLGVPSYVFLDMMEEQLANYDAAMEDPDKAIDLLTTYVDENMTTLTMSEMVLDGFMETR 881
Query: 700 EPHLQGML----TYELGELKECQCFIQVSESSLENCFSKHG-----SRFAETKKLQ---- 746
EP ++ +L + + LKE + + + C + G SR E K Q
Sbjct: 882 EPFVRSLLQLWRAWSIKALKEKARLVVKKGAFVLGCVDETGTLRGHSRATEGTKNQPKEV 941
Query: 747 ----------------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
VI G ++ +NP L PGD+R++EAVD P+L HL D +V
Sbjct: 942 RRDQLPQIFLQVPDHENGGTYKVITGLCLVGRNPSLHPGDIRMVEAVDVPQLRHLRDVVV 1001
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC----TPAEAKPLTCH- 839
FP +GDR + SG DLDGD Y+V WDE L P + S PPM P E + + +
Sbjct: 1002 FPLQGDRDVPSMCSGGDLDGDDYFVIWDEKLF-PKEWSYPPMNYEAPKAPEEKEVMVANN 1060
Query: 840 --------VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
+ + L I +AH+ AD+ GA E C+ LA+L +TAVD KTG
Sbjct: 1061 LAEFFVLFMKNDRLPLIAHAHLATADKHPEGAKTEKCLELAQLHSTAVDYVKTGVAAKWE 1120
Query: 892 SHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI-KGAYD--ENISVSSEVDINPVDIHYD 948
L P+ YP FME +TY S +LG+LY + + +D EN + P D
Sbjct: 1121 KRLDPRTYPHFMEKSRARTYYSKSVLGQLYDMVERQVFDIQENYKL-------PFDERII 1173
Query: 949 TDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGEL 1005
E+ + D AR K YD + ++GQ + R EF +W+ M K ++
Sbjct: 1174 KRYEL--NDDLLRQARKLKSQYDIAMRRIMGQLEI-RTEF-EVWTAFVMSKPRVGTDYKV 1229
Query: 1006 QERLKHSYSAFRKEFRQVFEKMNSDFELSDNEK---------NVLYEQKASAWYQVTYHR 1056
QE++ + +K+FR + K + D EK V E+ A Y+
Sbjct: 1230 QEKVGREAACLKKQFRDLCLKAAGASDRGDFEKLGPFVAAMYRVTCEEIRIALYEARQPH 1289
Query: 1057 EWVKKSLDLLEQGSARSVVLLSFAWIANDYLARI 1090
++ L + +ARS+ L+SF W+ L RI
Sbjct: 1290 RRPDGTMG-LRKITARSMPLISFPWLFPAELGRI 1322
>gi|119192036|ref|XP_001246624.1| hypothetical protein CIMG_00395 [Coccidioides immitis RS]
Length = 1492
Score = 319 bits (818), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 239/796 (30%), Positives = 367/796 (46%), Gaps = 115/796 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLL----RCQPREVI--VTALKHIYSYKRPVF 357
+ F + + + + G+LN++ + F L + RE++ V + KH+Y + +F
Sbjct: 460 LPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASEKHVYYDPKKIF 519
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV--------- 408
D +K PK +R +TP+ Y+ S D+
Sbjct: 520 DI---------LFVKPATSRRIPKYC---CYMRTARVTPSTVYFGTPSVDITNRVIRHYI 567
Query: 409 --ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
ADRFLRV F DE + ++ +N+ + VF RVK + +G L
Sbjct: 568 EYADRFLRVRFTDEKFEGR------------IQPSHNNTMDE---VFTRVKRTMMNGITL 612
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
R Y FLAF ++Q R+H A+FF+ + + +I+ WMG F+ K IA++AAR+G CFS+
Sbjct: 613 GDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFST 672
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPPPSAYQI 583
T A P ++ E+ DI+RNGY FSDG+G+I+ LA V K+ PPS +Q
Sbjct: 673 TRAVTGC-PVQI-REIEDIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVFQF 730
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KG++ P ++ +R S KF + H LE+ + F LNRQ+I +LS+
Sbjct: 731 RLGGCKGILTVSPEAQRQ-QVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSS 789
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEP 701
L V DE+F M L L + + A +L T + M+ GF+ EP
Sbjct: 790 LEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEP 849
Query: 702 HLQGML----TYELGELKECQCFIQVSESSLENCFSKHG--------------------- 736
+ +L +++ LKE I + L C + G
Sbjct: 850 FVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNIPSKDASYEERL 909
Query: 737 ----------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
SR K ++I G +IA+NP L PGD+R+++AV+ P LHHL D +VFP
Sbjct: 910 ACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHLRDVIVFP 969
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT--------- 837
Q GDR + SG DLDGD Y V WD++L+P P +A L+
Sbjct: 970 QTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLSRDVTVNDIT 1029
Query: 838 ----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
++ + L QI ++H+ AD E G D CI LA+L + AVD KTG M
Sbjct: 1030 SFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKTGIPAKMTKD 1089
Query: 894 LKPKKYPDFMEIEEY---QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTD 950
L P+K+P FME + Y S KILG+LY + E ++ +++ D ++
Sbjct: 1090 LAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIV-----ERVNYRPKLEAPFDDRILNSG 1144
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQE 1007
+EV + D A A K YD + ++ Q+ + + EF +WS + N K + E
Sbjct: 1145 IEV--NDDLLAVAAELKVLYDADMCRIMAQHEI-KTEF-EVWSTFVLSHSNMSKDYKFHE 1200
Query: 1008 RLKHSYSAFRKEFRQV 1023
+ A R+ FR +
Sbjct: 1201 EIGQISCALRERFRNL 1216
>gi|320036523|gb|EFW18462.1| RNA-directed RNA polymerase Rdp1 [Coccidioides posadasii str.
Silveira]
Length = 1444
Score = 319 bits (818), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 240/797 (30%), Positives = 368/797 (46%), Gaps = 117/797 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLL----RCQPREVI--VTALKHIYSYKRPVF 357
+ F + + + + G LN++ + F L + RE++ V + KH+Y + +F
Sbjct: 412 LPFSVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASEKHVYYDPKKIF 471
Query: 358 DAYEKLKDVQECLIKNPKLNEG-PKNIDDIAEVRRLVITPTKAYWFLESKDV-------- 408
D L P ++ PK +R +TP+ Y+ S D+
Sbjct: 472 D----------ILFVKPAMSRRIPKYC---CYMRTARVTPSTVYFGTPSVDITNRVIRHY 518
Query: 409 ---ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
ADRFLRV F DE + ++ +N+ + VF RVK + +G
Sbjct: 519 IEYADRFLRVRFTDEKFEGR------------IQPSHNNTMDE---VFTRVKRTMMNGIT 563
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
L R Y FLAF ++Q R+H A+FF+ + + +I+ WMG F+ K IA++AAR+G CFS
Sbjct: 564 LGDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFS 623
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPPPSAYQ 582
+T A P ++ E+ DI+RNGY FSDG+G+I+ LA V K+ PPS +Q
Sbjct: 624 TTRAVTGC-PVQI-REIEDIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVFQ 681
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R G KG++ P ++ +R S KF + H LE+ + F LNRQ+I +LS
Sbjct: 682 FRLGGCKGILTVSPEAQRQ-QVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLS 740
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTE 700
+L V DE+F M L L + + A +L T + M+ GF+ E
Sbjct: 741 SLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKE 800
Query: 701 PHLQGML----TYELGELKECQCFIQVSESSLENCFSKHG-------------------- 736
P + +L +++ LKE I + L C + G
Sbjct: 801 PFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNIPSKDASYEER 860
Query: 737 -----------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
SR K ++I G +IA+NP L PGD+R+++AV+ P LHHL D +VF
Sbjct: 861 LACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHLRDVIVF 920
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT-------- 837
PQ GDR + SG DLDGD Y V WD++L+P P +A L+
Sbjct: 921 PQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLSRDVTVNDI 980
Query: 838 -----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
++ + L QI ++H+ AD E G D CI LA+L + AVD KTG M
Sbjct: 981 TSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKTGIPAKMTK 1040
Query: 893 HLKPKKYPDFMEIEEY---QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDT 949
L P+K+P FME + Y S KILG+LY + E ++ +++ D ++
Sbjct: 1041 DLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIV-----ERVNYRPKLEAPFDDRILNS 1095
Query: 950 DLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQ 1006
+EV + D A A K YD + ++ Q+ + + EF +WS + N K +
Sbjct: 1096 GIEV--NDDLLAVAAELKVLYDADMCRIMAQHEI-KTEF-EVWSTFVLSHSNMSKDYKFH 1151
Query: 1007 ERLKHSYSAFRKEFRQV 1023
E + A R+ FR +
Sbjct: 1152 EEIGQISCALRERFRNL 1168
>gi|303313157|ref|XP_003066590.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106252|gb|EER24445.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1445
Score = 319 bits (817), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 239/796 (30%), Positives = 366/796 (45%), Gaps = 115/796 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLL----RCQPREVI--VTALKHIYSYKRPVF 357
+ F + + + + G LN++ + F L + RE++ V + KH+Y + +F
Sbjct: 413 LPFTVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASEKHVYYDPKKIF 472
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV--------- 408
D +K PK +R +TP+ Y+ S D+
Sbjct: 473 DI---------LFVKPATSRRIPKYC---CYMRTARVTPSTVYFGTPSVDITNRVIRHYI 520
Query: 409 --ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
ADRFLRV F DE + ++ +N+ + VF RVK + +G L
Sbjct: 521 EYADRFLRVRFTDEKFEGR------------IQPSHNNTMDE---VFTRVKRTMMNGITL 565
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
R Y FLAF ++Q R+H A+FF+ + + +I+ WMG F+ K IA++AAR+G CFS+
Sbjct: 566 GDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFST 625
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPPPSAYQI 583
T A P ++ E+ DI+RNGY FSDG+G+I+ LA V K+ PPS +Q
Sbjct: 626 TRAVTGC-PVQI-REIEDIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVFQF 683
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KG++ P ++ +R S KF + H LE+ + F LNRQ+I +LS+
Sbjct: 684 RLGGCKGILTVSPEAQRQ-QVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSS 742
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEP 701
L V DE+F M L L + + A +L T + M+ GF+ EP
Sbjct: 743 LEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLYKYIDPNQMTLVLAEMIQDGFQSSKEP 802
Query: 702 HLQGML----TYELGELKECQCFIQVSESSLENCFSKHG--------------------- 736
+ +L +++ LKE I + L C + G
Sbjct: 803 FVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNIPSKDASYEERL 862
Query: 737 ----------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
SR K ++I G +IA+NP L PGD+R+++AV+ P LHHL D +VFP
Sbjct: 863 ACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHLRDVIVFP 922
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT--------- 837
Q GDR + SG DLDGD Y V WD++L+P P +A L+
Sbjct: 923 QTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLSRDVTVNDIT 982
Query: 838 ----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
++ + L QI ++H+ AD E G D CI LA+L + AVD KTG M
Sbjct: 983 SFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKTGIPAKMTKD 1042
Query: 894 LKPKKYPDFMEIEEY---QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTD 950
L P+K+P FME + Y S KILG+LY + E ++ +++ D ++
Sbjct: 1043 LAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIV-----ERVNYRPKLEAPFDDRILNSG 1097
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQE 1007
+EV + D A A K YD + ++ Q+ + + EF +WS + N K + E
Sbjct: 1098 IEV--NDDLLAVAAELKVLYDADMCRIMAQHEI-KTEF-EVWSTFVLSHSNMSKDYKFHE 1153
Query: 1008 RLKHSYSAFRKEFRQV 1023
+ A R+ FR +
Sbjct: 1154 EIGQISCALRERFRNL 1169
>gi|260801457|ref|XP_002595612.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
gi|229280859|gb|EEN51624.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
Length = 1207
Score = 319 bits (817), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 241/795 (30%), Positives = 357/795 (44%), Gaps = 150/795 (18%)
Query: 389 VRRLVITPTKAYWF-----LESKDVADR----FLRVTFMDEGLQTMNANVLSYYVAPIVK 439
VRR+++TPT + E++ + D FLRV+F+DEG Q + + +
Sbjct: 287 VRRVIVTPTTLLFLQPEIMFENRMLRDYGEEFFLRVSFLDEGFQKLQGGIATGL------ 340
Query: 440 DITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD 499
++ +F RV+++L G + R Y FLA S++QLR H WFFS G+ +
Sbjct: 341 --------EEEDIFARVRNVLQTGVRVGERYYRFLAASNSQLRQHGVWFFSDDGKNTAES 392
Query: 500 IKNWMGEFTA-KNIAKYAARMGLCFSSTHATVE------IPPTEVDHELPDIKRNGYVFS 552
I+ MG+F+ + A Y ARMG CFS+T TV + +++ + R Y FS
Sbjct: 393 IRAEMGDFSGCRCPATYLARMGQCFSTTEPTVANVGNNAVEISDITGGYDPVNRKPYCFS 452
Query: 553 DGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKK 612
DGIGKI+ DLA + G M R SM K
Sbjct: 453 DGIGKISKDLARK-----------------------------------GEIMQYRSSMNK 477
Query: 613 FKSCHTSLEICSWTRFQPG--FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD 670
F S H +EIC T PG FLNRQ+IT+LS L V D +F +Q +L M +
Sbjct: 478 FWSLHDVIEIC--TTSHPGRLFLNRQVITILSQLGVPDIVFQQLQQERLFELADMFLLET 535
Query: 671 VAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY--------------------- 709
A E L +G +L G + TEP + ML
Sbjct: 536 SAAEALCQRAQMKGLPYRRLLKMGVQLTTEPFFRSMLQKIYKSSVGEIRRRARIGIPPEY 595
Query: 710 ---------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCL 760
E G L+ Q F+Q +E + N + K++V+ G VV+ + PCL
Sbjct: 596 GRIMLGVLDETGTLEYGQVFVQYTED-IAN----------QDGKVRVLEGDVVVTRTPCL 644
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---- 816
PGDVR L+A+D P L+H+ D +VFP KG RPH NE +G DLDGD ++VTW +LI
Sbjct: 645 HPGDVRKLQAIDVPALYHMVDVIVFPAKGPRPHPNEMTGGDLDGDDFFVTWLPDLIFNGP 704
Query: 817 --------PPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENC 868
P+K+ P + + ++ + LG I NAH+V AD G F + C
Sbjct: 705 NEQPMHFRSPTKREVPNVTIKHL-IDFIVDYIKNDRLGLIANAHLVFADTEPMGIFSDVC 763
Query: 869 ILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAY 928
LA + AVD PKTG + +P +YPDFM + T +S ++LG++YR+ +
Sbjct: 764 QRLAVKHSDAVDFPKTGVCPDLDKTERPLEYPDFMGKRDKTTRRSERVLGKMYRECQMI- 822
Query: 929 DENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEF 988
EN+ E +H D L + V + AR + Y+ QL L+ QY + +
Sbjct: 823 -ENVCTQVERKGTVEQVHPDYGLVIGEHVSYVKKARRSRDRYNDQLRSLMAQYGIETESE 881
Query: 989 RHIWSMPKYNSR-----KQGELQERLKHSYSAFRKEFRQ-VFEKMNSDFELSDNEKNVLY 1042
+ K + ++ E++ K RK RQ FE+ + + + +VL
Sbjct: 882 AVSGCIVKLHKHMDDRYERYEIERVAKVRIEDLRKRTRQDFFEEFGGEESVELDHPHVL- 940
Query: 1043 EQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGK 1102
+KASAWY VTY S LLSF W+ D L + +K A
Sbjct: 941 -KKASAWYTVTY---------------SDPDAKLLSFPWVIGDILGILNLKTATTARTAF 984
Query: 1103 SK--PVNNLARYVAD 1115
S+ ++N+ +A+
Sbjct: 985 SECPVIDNITHQLAN 999
>gi|116193483|ref|XP_001222554.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
Length = 1572
Score = 318 bits (816), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 256/883 (28%), Positives = 413/883 (46%), Gaps = 130/883 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLL--RCQPREVIVTALKHIYSYK----RPVF 357
+ +E+ + + + +GIL+++ + F + L +PR++ + + Y +PV+
Sbjct: 403 LPYEVRYQLEVCISRGILSEYNIRRDFLEKLFEMSKPRDLKPNRARLVLEYAADEGKPVY 462
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLES-----------K 406
+ E +D + + P P D A VR++ +TPT+ ++ + K
Sbjct: 463 NPMELFED-RGAMAYYPTTLHIP---DYCALVRKVTVTPTRIFFSTPTVETTNRVVRRYK 518
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
DV D F+RV F DE L I ++ + ++ RV +++ G +
Sbjct: 519 DVQDHFIRVQFTDELLDGR---------------IRASDVDRDDELYARVCRVMTQGIRM 563
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKV--GETSVLDIKNWMGEFT-AKNIAKYAARMGLCF 523
+ FLAF ++Q+R++ A+FF + G T+ I+ WMG F ++AK AAR+G CF
Sbjct: 564 GKWHWKFLAFGNSQIRENGAFFFCEPEDGTTTCHSIREWMGNFDHISSVAKLAARLGQCF 623
Query: 524 SSTHATVEIPPTEVDHELPDIKRN-GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
S+T I + ++PDI+ N G+ F+DG+GKI+ LA V++ K+D P SA+Q
Sbjct: 624 STTRLLNCISAPRI-VKIPDIESNDGFCFTDGVGKISFPLASLVSEAWKIDTRP--SAFQ 680
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R G KGV+ WP G + +R S +KF + + LEI ++F LNRQ I +LS
Sbjct: 681 FRMGGCKGVLVTWPDAK-GTEVHVRPSQEKFSAEYNGLEIIRCSQFSCPTLNRQTILILS 739
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSA----GFKPQ 698
L V D++F + A + + + D A E+L+ GN ++ GF
Sbjct: 740 CLGVPDDVFIDMMAGQIASYDTAMTNQDRAIELLSKYV--DGNMTTTTIATMILNGFMHT 797
Query: 699 TEPHLQGML----TYELGELKECQCFIQVSESSLENCFSKHG-----SRFAETKK----- 744
EP ++ +L ++ + LKE + + L C + G SR E +
Sbjct: 798 REPFVRTLLQLWRSWSIKGLKEKARLVVDQGAFLLGCVDETGTLRGHSRATEGRNGITQN 857
Query: 745 -----------------LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
+V+ G ++ +NP L PGD+R++EAVD PEL HL D +VFP
Sbjct: 858 DLPQIFLQVPDRKDRGAYKVVTGICIVGRNPSLHPGDIRVVEAVDVPELRHLRDVVVFPL 917
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL----------- 836
KGDR + SG DLDGD ++V WD LIPP + S PPM T E PL
Sbjct: 918 KGDRDVPSMCSGGDLDGDDFFVIWDPKLIPP-EWSHPPMNYTAPE--PLNESQESIVNSL 974
Query: 837 ----TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
+ + L I +AH+ AD GA C+ LA L + AVD KTG
Sbjct: 975 AFFFVLFMKNDRLPLIAHAHLATADYEVTGAKHWKCLQLASLHSIAVDYVKTGIPARWNK 1034
Query: 893 HLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI-KGAYDENISVSSEVDINPVDIHYDTDL 951
L P+KYP FME + ++Y+S +LG+LY I K +D + D I +L
Sbjct: 1035 KLDPRKYPHFMEKAKAKSYRSTSVLGKLYDMIDKEVFDNRDNYKLPFDDR---ILKRFEL 1091
Query: 952 EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQER 1008
P +AR K YD + ++GQ + R EF IW+ M K ++QE+
Sbjct: 1092 GHP----LLKEARKIKTQYDISMRRIMGQLEI-RTEF-EIWAAFVMSKPRVGTDYKVQEK 1145
Query: 1009 LKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWV----KKSLD 1064
+ + +K+FR + K+ E ++ +A Y+VT+ + +
Sbjct: 1146 VGRESAGLKKQFRDLCLKVV-------EEHGFNRQEFVAAMYKVTWEETRIALHEARQPH 1198
Query: 1065 LLEQG-------SARSVVLLSFAWIANDYLARIKIKCQEMANI 1100
+L G +ARS+ L+SF W+ D + +I + + + N+
Sbjct: 1199 VLPDGTVGLRRVTARSMPLISFPWLFPDDMGKIALGTERLPNL 1241
>gi|302658845|ref|XP_003021121.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
gi|291185002|gb|EFE40503.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
Length = 1587
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 230/713 (32%), Positives = 342/713 (47%), Gaps = 118/713 (16%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R +TP+ Y+ + D ADRFLRV F DE + + S Y
Sbjct: 597 MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYE---GRINSTY---- 649
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+N + VF RVK +++G + R Y FLAF ++Q R+H A+FF+ + +
Sbjct: 650 -----NNCMDE---VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTA 701
Query: 498 LDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F+ I AK+AAR+G CFS+T A P T E+ +++RNGY+FSDG+G
Sbjct: 702 ANIRAWMGHFSDIKIAAKHAARLGQCFSTTRAVTGCPVTV--REIDEVERNGYIFSDGVG 759
Query: 557 KITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA + KL PPS +Q R G KG++ P + +R S KF
Sbjct: 760 RISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRR-EVHIRKSQYKFA 818
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H LEI W++F LNRQ+I +LS L VSD IF M L + + A
Sbjct: 819 AIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDNIFIEKLRLMLEDLEQAMTSETKAMS 878
Query: 675 VLTASCAEQGNT--AAIMLSAGFKPQTEPHLQGML----TYELGELKE-CQCFI------ 721
+L T A M+ GF+ +P ++ +L +++ LKE + FI
Sbjct: 879 MLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 938
Query: 722 --------------QVSESSLENCFSKHGSRFAET----------KKLQVINGFVVIAKN 757
+ S+E + + E KK +VI G ++A+N
Sbjct: 939 FGCLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 998
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R++ AV+ P LHHL D +VFPQ GDR + SG DLDGD Y V WD++L+P
Sbjct: 999 PSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 1058
Query: 818 PSKKSC-PPMECTPAEAKPLT-------------CHVNHQNLGQICNAHVVHADRSEYGA 863
SK PM+ T + A+ LT ++ + L QI +AH+ AD E G
Sbjct: 1059 LSKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 1118
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ----TYKSNKILGR 919
DE CI LA+L + AVD K+G M L P+K+P FME ++Y+ Y+S KILG+
Sbjct: 1119 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFME-KKYKPKEAQYQSKKILGQ 1177
Query: 920 LYR---------QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSY 970
+Y +++ +DE I + D+ V S + A+ K Y
Sbjct: 1178 IYDIVERVEFRPKLEAPFDERI--------------LNCDISV--SEEMVLAAKKLKGLY 1221
Query: 971 DGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEF 1020
D + ++ Q+ + + EF +WS + N K + E L SA R+ F
Sbjct: 1222 DADMRRIMAQHEI-KTEF-EVWSTFVLGHANMSKDYKFHEELGQISSALRERF 1272
>gi|189202022|ref|XP_001937347.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984446|gb|EDU49934.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1604
Score = 318 bits (814), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 249/809 (30%), Positives = 378/809 (46%), Gaps = 122/809 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + + + A + G L +H ++ F L PR V L+ + + +D E
Sbjct: 574 LDFTVRYQLEACLSNGYLKEHSITSEFLKKLHSDPRHA-VCLLEKVADKQHTYYDPME-- 630
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRR-LVITPTK---AYWFLESKDV--------ADR 411
I ++ K I ++R +VITPT A +E+ + +DR
Sbjct: 631 -------IFGIQIKSLEKKIPSYCTLQRSVVITPTMMHVASPVMETSNRIIRKYAADSDR 683
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
F+RV F DE + + S + VF RV+ + G + GR Y
Sbjct: 684 FIRVKFSDEKTE---------------GQLRSMPNGKSGAVFDRVRRAMRHGIVVAGRYY 728
Query: 472 SFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT- 529
FLAF ++Q R+H A+FF+ S DI+ +G+FT K +AK+ AR+G CFS+T A
Sbjct: 729 DFLAFGNSQFREHGAYFFAPTSSMSANDIRLSLGDFTNVKTVAKFGARLGQCFSTTRAMS 788
Query: 530 --VEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS--PPPSAYQIRY 585
V I P +P+I RNGY F+DG+GK++P +A A+ L L + PPS +Q R
Sbjct: 789 QKVSIKP------IPEIMRNGYTFTDGVGKLSPFVAKMAAEELGLSNAFDDPPSLFQFRL 842
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLN 645
G KGV+A P G + +R S +KF++ LEI + F F NRQII +LS L
Sbjct: 843 GGCKGVLALDPTI-TGTEVHIRPSQQKFQAKFMGLEIIRSSAFATPFFNRQIIVVLSHLG 901
Query: 646 VSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHL 703
V D + Q M + + VA + L T A+ M+ GF +P +
Sbjct: 902 VPDHVIIKKQQEMVNDYETAMTDESVAIQKLRKHIDMNQTTLAMAAMVLDGFMKVQDPFM 961
Query: 704 QGMLTY----ELGELKE-CQCFIQ--------VSESS-LENCFSKHGSRFAETK------ 743
+L + LKE + I+ V E++ L+ + SR T+
Sbjct: 962 MSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHMNDPQSRLDATRDEKLAT 1021
Query: 744 ---------------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
++I G ++A+NP L PGD+R++ AV+ PEL HL + +V PQ
Sbjct: 1022 LPEIFLQVDDTNKKGHYKIIEGVCILARNPSLHPGDLRVVRAVNIPELQHLKNVVVLPQT 1081
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL------------ 836
GDR N SG DLDGD Y V WD LIP + + PPM+ TP + + +
Sbjct: 1082 GDRDLANMCSGGDLDGDDYMVLWDTALIPKT-INAPPMDFTPEKPEEIEGPIGAAHMGEF 1140
Query: 837 -TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
++ + LGQI +AH+ AD + G D+ C+ LA+L + AVD PK+G M L+
Sbjct: 1141 FVTYMKNDTLGQIAHAHLAQADSRDDGVNDQTCLALAELHSKAVDFPKSGLPAEMNRELR 1200
Query: 896 PKKYPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD--IHYDTD 950
PKK+P FME + EY+ Y S KILG LY Q+ + + + + NP D I D
Sbjct: 1201 PKKWPHFMEKKHMPEYKIYHSTKILGMLYDQV-----QLVDFKPQWE-NPFDKRILNAFD 1254
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQE 1007
LE V +A K SYD L L+ ++ + R EF WS + + + + E
Sbjct: 1255 LEETMKV----EAAKIKSSYDDALRRLMAKHGI-RTEFE-AWSVFVLAHNHESRDYKFSE 1308
Query: 1008 RLKHSYSAFRKEFR-QVFEKMNSDFELSD 1035
+ + + ++R + + D EL+D
Sbjct: 1309 EFGRTVATLKDQYRGECRKAAGRDNELAD 1337
>gi|327305981|ref|XP_003237682.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
gi|326460680|gb|EGD86133.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
Length = 1604
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 227/713 (31%), Positives = 341/713 (47%), Gaps = 118/713 (16%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R +TP+ Y+ + D ADRFLRV F DE + + S Y
Sbjct: 615 MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYE---GRINSTY---- 667
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+N + VF RVK +++G + R Y FLAF ++Q R+H A+FF+ + +
Sbjct: 668 -----NNCMDE---VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTA 719
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F+ K +AK+AAR+G CFS+T A P T + +++RNGY+FSDG+G
Sbjct: 720 ANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTV--RTIDEVERNGYIFSDGVG 777
Query: 557 KITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA + KL PPS +Q R G KG++ P + +R S KF
Sbjct: 778 RISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRR-EVHIRKSQYKFA 836
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H LEI W++F LNRQ+I +LS L VSDEIF M + + + A
Sbjct: 837 AIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMS 896
Query: 675 VLTASCAEQGNT--AAIMLSAGFKPQTEPHLQGML----TYELGELKE-CQCFI------ 721
+L T A M+ GF+ +P ++ +L +++ LKE + FI
Sbjct: 897 MLQKRVDPNQMTLLPAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 956
Query: 722 --------------QVSESSLENCFSKHGSRFAET----------KKLQVINGFVVIAKN 757
+ S+E + + E KK +VI G ++A+N
Sbjct: 957 FGCLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 1016
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R++ AV+ P LHHL D +VFPQ GDR + SG DLDGD Y V WD++L+P
Sbjct: 1017 PSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 1076
Query: 818 -PSKKSCPPMECTPAEAKPLT-------------CHVNHQNLGQICNAHVVHADRSEYGA 863
P PM+ T + A+ L ++ + L QI +AH+ AD E G
Sbjct: 1077 LPKDWFREPMDYTASNAQSLNRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 1136
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ----TYKSNKILGR 919
DE CI LA+L + AVD K+G M L P+++P FME ++Y+ Y+S KILG+
Sbjct: 1137 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRRWPHFME-KKYKPKEAQYQSKKILGQ 1195
Query: 920 LYR---------QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSY 970
+Y +++ +DE I + D+ V S D A+ K Y
Sbjct: 1196 IYDIVERVEFRPKLEAPFDERI--------------LNCDISV--SQDMVLAAKKLKALY 1239
Query: 971 DGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEF 1020
D + ++ Q+ + + EF +WS + N K + E L SA R+ F
Sbjct: 1240 DADMRRIMAQHEI-KTEF-EVWSTFVLGHANMSKDYKFHEELGQISSALRERF 1290
>gi|156035913|ref|XP_001586068.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980]
gi|154698565|gb|EDN98303.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1404
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 249/811 (30%), Positives = 383/811 (47%), Gaps = 151/811 (18%)
Query: 390 RRLVITPTKAYWFLESKDVADR-------------FLRVTFMDEGLQ-TMNANVLSYYVA 435
R+ +TP+ Y+ + + +R FLRV F DE + +NA
Sbjct: 452 RKATVTPSSIYFSSPTVETTNRVLRNYSKENKEGRFLRVQFTDEKAEGRINA-------- 503
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET 495
D N G+F RV ++S+G + R Y FLAF ++Q R++ A+FF
Sbjct: 504 --CADKIRND-----GLFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPPAYL 556
Query: 496 SVLDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDG 554
S DI+ WMG F+ N+ AKYAAR+G CFS+T A + ++ ++PDI+RNGY F+DG
Sbjct: 557 SCDDIRQWMGTFSHINVVAKYAARLGQCFSTTRAIRGLSAPDL-VKIPDIERNGYCFTDG 615
Query: 555 IGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWP-AKDDGIRMSLRGSMKKF 613
+GKI+P LA +A+ LKL + PSA+Q R G KG++ P AK++ + +R S +KF
Sbjct: 616 VGKISPFLAQMIAEELKLRTNSAPSAFQFRLGGCKGILVVSPDAKNNEVH--IRKSQQKF 673
Query: 614 KSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAF 673
+ + LEI ++F LNRQ IT+LS+L V DE+F + + S + + +A
Sbjct: 674 TAVYNGLEIIRCSQFSSATLNRQTITILSSLGVKDEVFLNMLSEQLSDYQNAMSNNTIAL 733
Query: 674 EVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML----TYELGELKE----------- 716
+L + T I M+ GF + EP + +L + + LKE
Sbjct: 734 NLLNRYIDDNYMTINIASMILNGFMTEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAF 793
Query: 717 ------------------CQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNP 758
C E L F + +R T + VI G ++ +NP
Sbjct: 794 VLGCVDETNTLRGYTKPTVACGTTYKEDELPQIFIQVPNR-ENTGQYNVIEGICLVGRNP 852
Query: 759 CLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
L PGD+R+++AV+ P LHHL D +VFPQ G+R + SG DLDGD ++V WD+NL P
Sbjct: 853 SLHPGDLRVVQAVNVPALHHLRDVVVFPQSGERDVPSMCSGGDLDGDDFFVIWDKNL-QP 911
Query: 819 SKKSCPPMECTPAEAKPLTC---------------HVNHQNLGQICNAHVVHADRSEYGA 863
S+ +C PM A P+T ++ + +L I +AH+ AD G
Sbjct: 912 SEWNCEPMSY--AALAPVTLKRPVKVRDLLKFFVKYMKNDSLPTIAHAHLAQADLLGNGI 969
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEE---YQTYKSNKILGRL 920
D C+ LA+L + AVD KTG+ M +L P+K+P FME + Y S KILG+L
Sbjct: 970 KDPKCLELAELHSKAVDYVKTGQPANMSRYLAPQKWPHFMEKTHKPLSKQYHSTKILGQL 1029
Query: 921 YRQIKG---------AYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYD 971
Y +++ +D+ I + +++ NP+ LE AR K YD
Sbjct: 1030 YDKVESLHFVPQYEEPFDKRILRAYKLE-NPI-------LEA---------ARQTKTKYD 1072
Query: 972 GQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG---ELQERLKHSYSAFRKEFRQVFEKMN 1028
+ +L Q ++ + EF +WS + K G +LQE + A + FR V
Sbjct: 1073 TAMRRILAQQDI-KTEF-EVWSTFILSKPKVGSDYKLQEEMASITGALKDRFRLVC---- 1126
Query: 1029 SDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLD--LLEQGSAR-------------- 1072
+++ + + +A Y+VT K+ LD L E + R
Sbjct: 1127 --IDIAGGKDFSVLGPFVAAMYKVT------KEELDIALAECRTTRMVNGMEVPKRRMRP 1178
Query: 1073 -SVVLLSFAWIANDYLARIKIKCQEMANIGK 1102
S+ L+SF W+ L RI + + + GK
Sbjct: 1179 DSMPLISFPWLFEKELGRIATGIEAIDDFGK 1209
>gi|451997457|gb|EMD89922.1| hypothetical protein COCHEDRAFT_1138647 [Cochliobolus heterostrophus
C5]
Length = 1228
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 265/886 (29%), Positives = 407/886 (45%), Gaps = 158/886 (17%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYE-- 361
+SF + + + + G + +H ++ F L + V L+ + ++ +D E
Sbjct: 315 LSFPVRYQLEVCLSNGYIKEHNITIGFLKKLEALESQQAVHILEKVADRQKIYYDPMEIF 374
Query: 362 -------KLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTK---AYWFLESKDV--- 408
K K CL++ R + ITPT A +E+ +
Sbjct: 375 DIPIKGIKRKMPSYCLLQ-----------------RSVTITPTMMHVATPVMETSNRIIR 417
Query: 409 -----ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
ADRF+RV F DE + + + + VF RV + +G
Sbjct: 418 KYEADADRFIRVRFTDEKNEGQ---------------LRNQPNGRAEAVFDRVFRAMKNG 462
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLC 522
+ GR Y FLAF ++Q R++ A+F++ S DI+ +GEF K ++K+AAR+G C
Sbjct: 463 IVVAGRYYEFLAFGNSQFRENGAYFYAPTSSKSANDIRISLGEFDHIKTVSKFAARLGQC 522
Query: 523 FSSTHA---TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPP 577
FS+T A TVE+ T PD K N ++F+DG+GK++P LA AQ L L + P
Sbjct: 523 FSTTRAMGVTVELTTT------PDKKHNNFIFTDGVGKLSPFLAQMAAQELGLANAFTDP 576
Query: 578 PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQI 637
PS +Q R G KGV+A P K ++ +R S KF++ +T LEI + F + NRQI
Sbjct: 577 PSLFQFRLGGSKGVLALDP-KLKRNQVKIRPSQYKFRAPYTGLEIIRSSSFATPYFNRQI 635
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC--AEQGNTAAIMLSAGF 695
I +LS L V D +F Q M + + + A + L + + T A M+ GF
Sbjct: 636 ILVLSYLGVQDAVFLRKQEDMMNDYSRAMADETTALQKLRKNIDINQTTLTMAAMVLDGF 695
Query: 696 KPQTEPHLQGMLTY----ELGELKECQCFIQVSESS-----------LENCFSKHGSRFA 740
EP + +L + LKE + I + + L+ F+ SR
Sbjct: 696 MGSREPFIMSLLALWRACTIKNLKE-KARIAIDNGAFLLGCVDETKKLKGHFNDPQSRRD 754
Query: 741 ETKK----------LQV-----------INGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
T+ LQV I G ++A+NP L PGDVR++ AV+ ELHHL
Sbjct: 755 ATRDEKLATLPEIFLQVSDPNSKGHYIIIEGICIVARNPSLHPGDVRVVRAVNVEELHHL 814
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA----KP 835
+ +VFPQ GDR N SG DLDGD Y V WD +L+ P + + PPM+ TP +A P
Sbjct: 815 KNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDTDLL-PERINEPPMDFTPEKAVEIDGP 873
Query: 836 LTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
++ ++ + LG I +AH+ AD +E G D C+ LA+L + AVD PK+G
Sbjct: 874 ISALDMARFFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPKSGI 933
Query: 887 IVTMPSHLKPKKYPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
M L+PKK+P FME + ++Q YKS KILG LY ++K I + + NP
Sbjct: 934 PAEMKRELRPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVK-----LIDFEPQWE-NPF 987
Query: 944 DIH----YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNS 999
D +D D E+ A + K SYD L L+ ++ + + EF ++
Sbjct: 988 DKRILEAFDLDQEL------LDKAASLKLSYDEALRRLMAKHGI-KTEFEAWSVFVLVHN 1040
Query: 1000 RKQGELQ--ERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHRE 1057
+ G+ + E + +A + +FR + ++ ELSDN +A Y VT H
Sbjct: 1041 HESGDYKFAEEFGRTIAALKHQFRS---ECSNAAELSDNNDWARLGPFVAAMYTVTAHE- 1096
Query: 1058 WVKKSLD-------------LLEQGSARSVVLLSFAWIANDYLARI 1090
++ +LD L + L+SF W+ L +I
Sbjct: 1097 -MENALDECTKTKTVGGRTVPLRIKDPEHMPLISFPWLFPSELGKI 1141
>gi|258573507|ref|XP_002540935.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901201|gb|EEP75602.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1521
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 254/869 (29%), Positives = 391/869 (44%), Gaps = 122/869 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ + + + + + G+L+++ + F L L+H+ K +D K+
Sbjct: 492 LPYSVRYQLEVCLSHGLLSEYTIGKDFTTTLAALGETNARELLEHVAGEKLVYYDPM-KI 550
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
D+ +K PK +R +TP+ Y+ S D+ ADRF
Sbjct: 551 FDI--LFVKPATSRRIPKYC---CYMRTARVTPSTVYFNTPSVDISNRVIRHYIEYADRF 605
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE + I+ + + VF R+K + +G L R Y
Sbjct: 606 LRVRFTDERFEGR---------------ISPSHNNTMDEVFTRIKRAMMNGITLGDRHYE 650
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q R+H A+FF+ + + +I+ WMG F+ K IA++AAR+G CFS+T A
Sbjct: 651 FLAFGNSQFREHGAYFFASLPHLTASNIRAWMGHFSDIKEIARHAARLGQCFSTTRAVTG 710
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPPPSAYQIRYAGYK 589
P ++ E+ DI+RNG+ FSDG+G+I+ LA + K+ PPS +Q R G K
Sbjct: 711 C-PVQI-REIEDIERNGHTFSDGVGRISRFLAQMIMTEFKIKTPCGEPPSVFQFRLGGCK 768
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++ P + +R S KF + H LE+ + F LNRQ+I +LS L V DE
Sbjct: 769 GILTVSPEAQRR-EVHIRKSQYKFPAIHNGLEVIRHSHFSMASLNRQLIVVLSALEVPDE 827
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML 707
IF M L L + + A +L T + M+ GF+ EP + +L
Sbjct: 828 IFIEKLRVMLENLELAMSSEAQAIHLLHKYVDPNQMTLVLAEMVQDGFQASKEPFVTSLL 887
Query: 708 ----TYELGELKECQCFIQVSESSLENCFSKHG--------------------------- 736
+++ LKE I + L C + G
Sbjct: 888 ELWRAWQIKYLKEKAKIIIEDGACLFGCLDETGTLKGFFNDKIPAANASYEEKLESLPEV 947
Query: 737 ----SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRP 792
SR K +VI G ++A+NP L PGD+R+++AV+ P LHHL D +VFPQ GD+
Sbjct: 948 FVQISRADNGGKYEVIEGPCIVARNPSLHPGDIRVVKAVNVPALHHLKDVVVFPQTGDKD 1007
Query: 793 HTNEASGSDLDGDLYYVTWDENLIP-----------PSKKS-CPPMECTPAEAKP-LTCH 839
+ SG DLDGD Y + WD++L+P PS K+ C + T + +
Sbjct: 1008 VPSMCSGGDLDGDDYLIIWDQDLLPKNWFRQPMDYVPSTKAHCLSRDVTVNDITSFFVTY 1067
Query: 840 VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY 899
+ + L QI AH+ AD E G D C+ LA+L + AVD KTG M L P+K+
Sbjct: 1068 MKNDRLPQIALAHLAWADYLERGVNDPKCMQLAELHSAAVDYNKTGIPAKMTKDLIPRKW 1127
Query: 900 PDFMEIE---EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP-VDIHYDTDLEVPG 955
P FME + + Y S KILG+LY +++ VD P ++ +D + G
Sbjct: 1128 PHFMEKKHKPKEAQYISQKILGQLYDRLE-----------RVDYRPKLEADFDERILSSG 1176
Query: 956 ---SVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERL 1009
S D A A K YD + ++ Q+ +N EF +WS + N K + E +
Sbjct: 1177 IETSDDLLAMATELKTLYDADMRRIMAQHEIN-TEF-EVWSTFVLSHANMSKDYKFHEEI 1234
Query: 1010 KHSYSAFRKEFRQV-FEKMNS-DFELSDNEKNVLYE------QKASAWYQVTYHREWVKK 1061
SA R+ FR + FEK DFE +Y+ +A A + Y E +
Sbjct: 1235 GQIASALRERFRVLCFEKAGGKDFEHLAPLAVAMYKVTCNEMTQALAASKARYSDETGIQ 1294
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARI 1090
S+ + + + +SF W+ L +I
Sbjct: 1295 SVSIKHE---EKLPFISFPWVLQPVLGKI 1320
>gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa]
Length = 1638
Score = 312 bits (800), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 263/872 (30%), Positives = 396/872 (45%), Gaps = 132/872 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR--CQ--------PREVIVTALKHIYSYK 353
+ F++ + + + +GI+N+H + F + L C +I+ + Y+ K
Sbjct: 444 LPFDVRYQLEVCISQGIINEHNIDRPFLEKLMEFCDNDNSFGKDRARLILEYVADEYAGK 503
Query: 354 RPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------F 402
R +FD E KD L P P + A VRR+ ITPT+ Y+
Sbjct: 504 R-IFDPMELFKD-HAALAYFPTSFMIPNHC---AWVRRVTITPTRIYFSTPCVEPTNRVI 558
Query: 403 LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSD 462
+ K D F+R+ F DE L+ S + +F RV +L
Sbjct: 559 RQWKHAQDYFIRIQFTDEVLEG-----------------RIKSGEAELPLFLRVYRVLEK 601
Query: 463 GFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGL 521
G + + FLAF ++Q+R+ A+ F + + ++ WMG F+ K IAKYAAR+G
Sbjct: 602 GVAMGPWHWKFLAFGNSQIREAGAFMFCEQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQ 661
Query: 522 CFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAY 581
CFS+T IP + +PD++++G+ F+DG+GKI+P LA VA +D PPPSAY
Sbjct: 662 CFSTTRLVPGIPAPRI-VTIPDVEKDGFCFTDGVGKISPLLAKIVAHDWSID--PPPSAY 718
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
Q R G KGV+ WP G+ + +R S +KF + LE+ ++F LNRQII +L
Sbjct: 719 QFRMGGCKGVLVTWPDVK-GMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVL 777
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQT 699
S+L V D++F + S N + A +L E T I ML+ GF
Sbjct: 778 SSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFMGSQ 837
Query: 700 EPHLQGML----TYELGELKECQCFIQVSESS-LENCFSKHGSRFAETKKLQ-------- 746
EP ++ +L ++ + LKE + + V +S+ + C + G+ K ++
Sbjct: 838 EPFVRTLLQLWRSWSIKTLKE-KARLNVEKSAFVLGCVDETGTLKGHMKVIEDWKDVSSE 896
Query: 747 ------------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
VI G V+ +NP L PGD+R++EAVD P L HL D +VFP
Sbjct: 897 KLPQIFLQIPDDVNGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLT 956
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC---------- 838
GDR + SG DLDGD ++V WD LI P ++S PPM P K L
Sbjct: 957 GDRDVPSMCSGGDLDGDDFFVIWDPLLI-PKERSHPPMISEPIAGKELATEPTVNNLITF 1015
Query: 839 ---HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
++ + NL I +AH+ AD G C+ LA L + AVD KTG P L
Sbjct: 1016 FVLYMKYNNLPLIAHAHLATADAEVEGVKSPKCLELASLHSMAVDYVKTGVAAEFPRRLD 1075
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIKG-AYDENISVSSEVDINPVDIHYDTDLEVP 954
PK +P FME + TY S LG+LY +K +D + D N + H
Sbjct: 1076 PKTWPHFME-KNRHTYHSVTALGKLYDMVKRETFDMKENYQLPFD-NRILKHTKCRALRD 1133
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKH 1011
G++ A AR K YD + ++ Q + EF +W+ M K +LQ+ +
Sbjct: 1134 GTL---AKARRIKSQYDTAMRRVMCQLEIA-TEF-EVWTAFVMSKPRVGSDYKLQDNVGR 1188
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSA 1071
SA ++ F+ +K LS SA Y+VTY E V+ +L +Q
Sbjct: 1189 ESSALKQHFKDQCKKEAGGDLLS----------FVSAMYRVTY--EEVRIALFEAKQPHV 1236
Query: 1072 R-------------SVVLLSFAWIANDYLARI 1090
R ++ L+SF W+ D L +
Sbjct: 1237 RPDGRLGTRKITPKTMPLVSFPWLFWDKLGEL 1268
>gi|345566166|gb|EGX49112.1| hypothetical protein AOL_s00079g66 [Arthrobotrys oligospora ATCC
24927]
Length = 1475
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 259/885 (29%), Positives = 408/885 (46%), Gaps = 153/885 (17%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFD-LLRCQPREVIVTALKHIYSYKRPVFDAYEK 362
+++ + + + A + +G ++++ +S F D L+ + RE + A++ + + V D+ ++
Sbjct: 526 LTYPLRYQLEACISQGCVSEYNVSKEFIDELIAIEEREPNL-AVRILET----VVDSGKR 580
Query: 363 LKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW--------------FLESKDV 408
D E L P+ + E R+ ITPT Y+ F KD
Sbjct: 581 YYDPMEILDIKPERRSTAQIPKYCVETRKATITPTMIYYANPVVETSYRVIRHFFNHKD- 639
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
RFLRV F DE L I++ +F RV L++G +
Sbjct: 640 --RFLRVQFTDEKLHG---------------KISATELDTSHELFTRVSKALNNGIKIGD 682
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTH 527
R + FLAF ++QLR H A+FF+ + + DI+ WMG+F K +AK++AR G CFS+T
Sbjct: 683 RHFQFLAFGNSQLRQHGAYFFADGPDLTCDDIRKWMGKFEKIKVVAKFSARYGQCFSTTR 742
Query: 528 ATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG-SPPPSAYQIRYA 586
A ++ +PD++RNG+ F+DG G I+ A +A ++ SP P A+Q R
Sbjct: 743 AMNGFKVKDI--TIPDVERNGFCFTDGCGTISSSAAQLIAAEYRIPRESPLPCAFQFRLG 800
Query: 587 GYKGVVACWP------AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITL 640
G KGV+ P + G ++ +R S +KF + H SLEI ++ F LNRQ+I +
Sbjct: 801 GCKGVLVVDPNIKKVETGEAGFQVCIRPSQRKFDADHNSLEIIRYSDFSVATLNRQLIQV 860
Query: 641 LSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQ 698
LS L + D +F S LNL + + A ++L + G T I +LS GF
Sbjct: 861 LSDLGLEDTVFLDKLHSQLRDLNLAMEDKEAARKILMKNVDANGGTIQIAGLLSDGFMTS 920
Query: 699 TEPHLQGML----TYELGELKECQ-------CFIQ--VSESS-LENCFSKHGSRFAETK- 743
EP +Q +L + + LKE CF+ V E+ L+ F K +++
Sbjct: 921 QEPFVQCLLHLWRAWSIKMLKEKARITIENGCFLLGVVDETGILKGHFDKEHEELKKSRA 980
Query: 744 ------------------------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
++I G ++A+NP L PGD+R++ AVD P+L HL
Sbjct: 981 NGEALRCDLLPEIFVQIPDYENKGHYKIIQGPCLLARNPSLHPGDLRVVNAVDCPDLRHL 1040
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT---PAEAKP- 835
+ +VFPQ GD+P N SG DLDGD Y V WD IPP K + PM+ T P EAK
Sbjct: 1041 RNVVVFPQTGDKPIANMCSGGDLDGDDYIVIWDGTFIPP-KVNESPMDYTPPKPVEAKSG 1099
Query: 836 ----------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
++ + LG I NAH+ ADR G F + C+ LA L + AVD PKTG
Sbjct: 1100 NVTLEDIRKFFVRYMKNDTLGTIANAHLATADRLPAGVFSQECVELAGLHSLAVDFPKTG 1159
Query: 886 KIVTMPSHLKPKKYPDFMEIE---EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP 942
M L+ + +P F E + + Y S++ILG+LY + E ++ E
Sbjct: 1160 VDAKMRKELRIRDWPHFFEKHIGTKKRFYVSSEILGQLYDAV-----EKVAFRPE----- 1209
Query: 943 VDIHYDTDLEVPGSVDFTA----------DARNQKCSYDGQLNGLLGQYNVNRKEFRHIW 992
DL+ G + TA AR+ K YD + L+ Q ++ + EF IW
Sbjct: 1210 ---ECAKDLKFDGRI-LTAFNDINEKHLNMARDLKAKYDAAIRRLMAQNDI-KTEF-EIW 1263
Query: 993 SMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELS-----DNEKNVLYEQKAS 1047
S L L S F ++ +++ + + F+ E + +
Sbjct: 1264 ST--------FALSHALIGSDYKFHEDMKEMRDGLMDRFDQEIRVEIRTEDEYTLGRFVA 1315
Query: 1048 AWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKI 1092
A YQ+T + E+ + +E G + L+SF W+ ++ L +I +
Sbjct: 1316 AIYQIT-NEEYTRA----VENGEP--MPLISFPWVHDELLGKIAM 1353
>gi|330935167|ref|XP_003304850.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
gi|311318353|gb|EFQ87064.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
Length = 1458
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 238/766 (31%), Positives = 360/766 (46%), Gaps = 122/766 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVI-----VTALKHIYSYKRPVFD 358
+ F + + + A + G L +H ++ F + L R I V +HIY +F
Sbjct: 496 LDFTVRYQLEACLSNGYLKEHSITSEFLEKLHSDSRRAICLLEKVVDKQHIYYDPMDIFS 555
Query: 359 AYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTK---AYWFLESKDV------- 408
++K +++ + L R +VITPT A +E+ +
Sbjct: 556 I--RIKSLEKKIPSYCTLQ------------RSVVITPTMMHVASPVMETSNRIIRKYAA 601
Query: 409 -ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
+DRF+RV F DE + + S + VF RV+ + G +
Sbjct: 602 DSDRFIRVKFSDEKTEGQ---------------LRSMPNGKSEAVFDRVRRAMRHGIVVA 646
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSST 526
GR Y FLAF ++Q R+H A+F++ S DI+ +G+FT K +AK+ AR+G CFS+T
Sbjct: 647 GRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRLSLGDFTQIKTVAKFGARLGQCFSTT 706
Query: 527 HAT---VEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS--PPPSAY 581
A V+I P +PDI+RNG+ F+DG+GK++P +A A+ L L + PPS +
Sbjct: 707 RAMREKVKITP------IPDIERNGHTFTDGVGKLSPFVAKMAAKELGLSNAFDDPPSLF 760
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
Q R G KGV+A G + +R S +KF + LEI + F NRQII +L
Sbjct: 761 QFRLGGCKGVLAL-DLNITGTEVHIRPSQQKFHAKFMGLEIIRSSALATPFFNRQIIVVL 819
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA--SCAEQGNTAAIMLSAGFKPQT 699
S L V D + Q M + + +A + L + T A M+ GF
Sbjct: 820 SHLGVPDHVIIKKQQEMVNDYETAMTDESIALQKLRKHIDMNQSTLTMAAMVLDGFMKIQ 879
Query: 700 EPHLQGMLTY----ELGELKE-CQCFIQ--------VSESS-LENCFSKHGSRFAETK-- 743
+P + +L + LKE + I+ V E++ L+ + SR T+
Sbjct: 880 DPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHMNDPQSRLDATRDE 939
Query: 744 -------------------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
++I G ++A+NP L PGD+R++ AV+ PEL HL + +V
Sbjct: 940 KLATLPEIFLQVDDTDKKGHYKIIEGVCILARNPSLHPGDLRVVRAVNIPELRHLKNVVV 999
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAK----PLTC-- 838
PQ GDR N SG DLDGD Y V WD LIP + + PPM+ TP + + P++
Sbjct: 1000 LPQTGDRDLANMCSGGDLDGDDYMVLWDAALIPKT-INVPPMDFTPEKPEEIDGPISAAD 1058
Query: 839 -------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
++ + LGQI +AH+ AD G DE C+ LA+L + AVD PK+G M
Sbjct: 1059 IGEFFVTYMKNDTLGQIAHAHLAQADFRADGVNDETCLALAELHSKAVDFPKSGLPAEMD 1118
Query: 892 SHLKPKKYPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYD 948
L+P+K+P FME I +Y+ Y+S KILG LY Q++ D + D +D +D
Sbjct: 1119 RELRPRKWPHFMEKKHISQYKIYRSTKILGMLYDQVQ-LVDFKPQWENPFDKRVLDA-FD 1176
Query: 949 TDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSM 994
D A A K SYD L L+ ++ + R EF WS+
Sbjct: 1177 LD------ATMKAKAAEIKSSYDDSLRRLMAKHGI-RTEFE-AWSV 1214
>gi|402075074|gb|EJT70545.1| RNA-dependent RNA polymerase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1551
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 234/789 (29%), Positives = 369/789 (46%), Gaps = 122/789 (15%)
Query: 389 VRRLVITPTKAYW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R+ ++TP+ Y D DRF+R+ F DE L N
Sbjct: 428 MRKAIVTPSTVYLNSPTVETTNRVLRHYYDFRDRFMRIQFTDE-LHRGRINA-------- 478
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+D N ++ RV +L +G + R Y FLAF ++Q+R+ SA+FF+ VG+ +
Sbjct: 479 TQDQRVND-----ELYTRVYRVLRNGIFIGDRHYQFLAFGNSQMRESSAYFFAAVGDVTC 533
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
I+ WMG+F +N+ KYAAR+G CFS+T ++ + +PDI+ NGY FSDG+G
Sbjct: 534 DSIRAWMGDFRHIRNVGKYAARLGQCFSTTR-NIDSTSVQWIKSIPDIEENGYCFSDGVG 592
Query: 557 KITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC 616
KI+ + ++Q L L+ PSA+Q R G KG++ WP G+ + +R S +KF++
Sbjct: 593 KISQFWSTRISQRLSLNTY--PSAFQFRMGGRKGILTVWPDV-KGMDIHVRPSQEKFQTE 649
Query: 617 HTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
H+ LE+ +++ LNRQ I +LS L + D +F + A + + + A +L
Sbjct: 650 HSRLEVIRCSQYAVATLNRQTIPILSALGIEDHVFEDMLADQLASYDKAMEDPVAAMSLL 709
Query: 677 TASCAEQGNTAAI--MLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESSLEN 730
E T A+ ++ AG EP + ML T+ + LKE + + +
Sbjct: 710 NLYVDENQMTKALSQLIMAGLMKSQEPFVWTMLRLWRTWSIKSLKEKARIVVEKGAFVLG 769
Query: 731 CFSKHG---SRFAETKK---------------------------LQVINGFVVIAKNPCL 760
C + G +A K +V+ G V+ +NP L
Sbjct: 770 CVDETGKLRGHYARVKTHPDQRPRLNHSELPQIFLQVPDGPNGLYKVVTGTCVVGRNPSL 829
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI-PPS 819
PGD+RI+EAVD PEL HL D +VFP+ GDR + SG DLDGD Y++ WDE L+ PP
Sbjct: 830 HPGDLRIVEAVDVPELRHLRDVVVFPKSGDRDIPSMCSGGDLDGDDYFIIWDERLVPPPE 889
Query: 820 KKSCPPMECTPAEA-------------KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDE 866
++S PPM ++ + H+ + +L I +AH+ HAD G E
Sbjct: 890 ERSYPPMNYEAEKSLDPDRDVTADDLRRFFVLHMKNHSLPTIAHAHLAHAD--CLGVKSE 947
Query: 867 NCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKG 926
CI LA+L + AVD PKTG + L PK+YP FME +TY S +ILG+LY ++
Sbjct: 948 VCIELARLHSQAVDYPKTGIPAVVRRGLIPKQYPHFMEKSTRRTYHSGRILGKLYDKVHQ 1007
Query: 927 AYDENISVSSEVDINPV-DIHYDTDLEVPGSVDFTA--DARNQKCSYDGQLNGLLGQYNV 983
A +P ++ +D+ + +D AR K YD + ++GQ ++
Sbjct: 1008 A-----------TFDPAYEMVFDSRILNKYKLDAATLRKARQMKTKYDQAMRRIMGQGDI 1056
Query: 984 NRKEFR----HIWSMPKY-NSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEK 1038
EF + S P+ N+ K QE + + + FR + ++ D+ K
Sbjct: 1057 G-TEFEVFSSFVLSRPRVGNAYKH---QENVGRESATLKSLFRTKCIEAAAELAEGDDAK 1112
Query: 1039 N----------VLYEQKASAWYQVTYHR---EWVKKSLDLLEQGSAR----SVVLLSFAW 1081
+ + + V +R E V+ +L + AR S+ L++F W
Sbjct: 1113 GGGGVKIPPSLLRHNLDVMGPFVVAMYRVTDEEVRIALHECKSRGARPNPKSMPLITFPW 1172
Query: 1082 IANDYLARI 1090
I + L I
Sbjct: 1173 IFDTVLTEI 1181
>gi|398388269|ref|XP_003847596.1| RNA-directed RNA polymerase, partial [Zymoseptoria tritici IPO323]
gi|339467469|gb|EGP82572.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 959
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 237/761 (31%), Positives = 357/761 (46%), Gaps = 103/761 (13%)
Query: 394 ITPTKAYW---FLES--------KDVADRFLRVTFMDEG----LQTMNANVLSYYVAPIV 438
ITPT Y+ LE+ K DRF+RV F DE LQ+ + ++
Sbjct: 237 ITPTTIYFATPVLETSNRVVRNYKKYEDRFMRVKFTDEKHKGQLQSQDGQAMN------- 289
Query: 439 KDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL 498
VF R+K ++ G + R Y FLAF + Q R+H A+FF+ + +
Sbjct: 290 ------------EVFSRIKQAMTHGIRVADRHYEFLAFGNAQFREHGAYFFASTPDLNAN 337
Query: 499 DIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGK 557
I+ WMG FT KN+AKY +R+G C+++T A IP + +PD++RNGY F+DG+GK
Sbjct: 338 MIRQWMGNFTQIKNVAKYISRLGQCYTTTRA---IPHSVNVERIPDVERNGYCFTDGVGK 394
Query: 558 ITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH 617
I+P LA VA +LD PS YQ R AG KGV+A P+ G+ + +R S +KF +
Sbjct: 395 ISPLLARMVADHFRLDNC--PSVYQFRMAGCKGVLAVDPSL-KGMTVQIRPSQEKFPAEF 451
Query: 618 TSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLT 677
LEIC ++F LN Q+I ++S+L V D +F M + L L + ++A ++L
Sbjct: 452 HGLEICKMSQFSAANLNVQLILVMSSLGVPDNVFVNKYRDMLADLALAMTDEEMALKLLQ 511
Query: 678 ASCAEQGNTA--AIMLSAGFKPQTEPHLQGML----TYELGELKE-CQCFIQVS------ 724
+ T A ++ GF +P L ++ L LKE + F+
Sbjct: 512 KNIDFNQMTIYLATIILDGFMATKDPFTISCLRLWRSWNLKYLKEKARVFVDQGAFVFGV 571
Query: 725 ---ESSLENCFSKHGSR-------------FAETKKLQVINGFVVI------AKNPCLRP 762
+L+ F + F + G+ VI A+NP L P
Sbjct: 572 TDETGTLQGQFDGFKTDEGDMAVPPTLPQIFLQIPDPNAKGGYTVIQGPCLFARNPSLHP 631
Query: 763 GDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
GD+R++EAVD P LHHL DC+V PQ GDR N SG DLDGD Y + WD +L PP +
Sbjct: 632 GDIRMVEAVDVPALHHLKDCVVLPQTGDRDLANMCSGGDLDGDDYLICWDADLFPPVSDT 691
Query: 823 CPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
P ++ + LGQI + H AD+ + G +E C+ LA L + AVD
Sbjct: 692 GP--VTVDDMTSFFVNYIKNNKLGQIASHHRFWADKEDDGVKNEKCLQLANLHSLAVDYV 749
Query: 883 KTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP 942
KTG T+P LK K P + E Q+Y S K+LG+LY ++K +N + E+ +
Sbjct: 750 KTGVPATLPVELKVKARPHWAEARG-QSYTSRKVLGQLYDEVKL---DNFQPAWELPFDA 805
Query: 943 VDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV-NRKEFRHIWSMPKYNSRK 1001
+ DT + + A A K YD + ++ QY + N E + +N
Sbjct: 806 RILTADTP-----TPELIAGATEVKAEYDETMRRIMKQYGITNEFEVFTTFVQSHHNDIN 860
Query: 1002 QGELQERLKHSYSAFRKEFRQV-FEKMNSDFELSDNEKNVLYEQKASAWYQVTYHR--EW 1058
+ E++ R +F+++ + K +D + K + A Y VT +
Sbjct: 861 DYKFYEKIGEVSMNLRDQFKEICYTKAGTDSVQREWSK---LKPFLIAMYTVTADQVTAV 917
Query: 1059 VKKSLDLLEQGSAR---------SVVLLSFAWIANDYLARI 1090
V S + +E+G + +V L+SF WI L RI
Sbjct: 918 VASSHETVERGGRQVPKMSLTFATVPLMSFPWIFASELGRI 958
>gi|336463319|gb|EGO51559.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2508]
gi|350297473|gb|EGZ78450.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2509]
Length = 1633
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 262/875 (29%), Positives = 393/875 (44%), Gaps = 138/875 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR--CQ--------PREVIVTALKHIYSYK 353
+ F++ + + + +GI+N+H + F + L C +I+ + Y+ K
Sbjct: 448 LPFDVRYQLEVCISQGIINEHNIDRPFLEKLMEFCDNDNSFGKDRARLILEYVADEYAGK 507
Query: 354 RPVFDAYEKLKDVQECLIKNPKLNEGPKNI---DDIAEVRRLVITPTKAYW--------- 401
R +FD E KD N L P + + A VRR+ ITPT+ Y+
Sbjct: 508 R-IFDPMELFKD-------NAALTYFPTSFMIPNHCAWVRRVTITPTRIYFSTPCVEPTN 559
Query: 402 --FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSI 459
+ + D F+R+ F DE L+ S + +F RV +
Sbjct: 560 RVIRQWRHAQDYFIRIQFTDEVLEG-----------------RIKSGEAELPLFLRVYRV 602
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAAR 518
L G + + FLAF ++Q+R+ A+ F + + ++ WMG F+ K IAKYAAR
Sbjct: 603 LEKGVAMGPWHWKFLAFGNSQIREAGAFMFCEQSNLTCDMMRAWMGRFSHIKVIAKYAAR 662
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
+G CFS+T IP + +PD++++G+ F+DGIGKI+P LA VA +D PPP
Sbjct: 663 LGQCFSTTRLVPGIPAPRI-ITIPDVEKDGFCFTDGIGKISPLLAKIVAHDWSID--PPP 719
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
SAYQ R G KGV+ WP G+ + +R S +KF + LE+ ++F LNRQII
Sbjct: 720 SAYQFRMGGCKGVLVTWPDVK-GMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQII 778
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFK 696
+LS+L V D++F + S N + A +L E T I ML+ GF
Sbjct: 779 AVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFM 838
Query: 697 PQTEPHLQGML----TYELGELKECQCFIQVSESS-LENCFSKHGSRFAETK-------- 743
EP ++ +L ++ + LKE + + V +S+ + C + G+ K
Sbjct: 839 ESQEPFVRTLLQLWRSWSIKTLKE-KARLNVEKSAFVLGCVDETGTLKGHMKVTEDWKDV 897
Query: 744 ---KL---------------QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
KL +VI G V+ +NP L PGD+R++EAVD P L HL D +VF
Sbjct: 898 PSEKLPQIFLQIPDDVNGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVF 957
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC------- 838
P GDR + SG DLDGD ++V WD LI P ++S PPM P K L
Sbjct: 958 PLAGDRDVPSMCSGGDLDGDDFFVIWDPLLI-PKERSHPPMTSEPIAGKELATEPTVNNL 1016
Query: 839 ------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
++ + NL I +AH+ AD G C+ LA L + AVD KTG P
Sbjct: 1017 ITFFVLYMKYNNLPLIAHAHLATADAEVEGVKSPKCLELASLHSMAVDYVKTGVAAEFPR 1076
Query: 893 HLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLE 952
L PK +P FME + TY S LG+LY +K E + + P D +
Sbjct: 1077 RLDPKTWPHFME-KNRHTYHSVTALGKLYDMVK---RETFDMKENYQL-PFDNRILKHTK 1131
Query: 953 VPGSVDFT-ADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQER 1008
D T AR K YD + ++ Q + EF +W+ M K +LQ+
Sbjct: 1132 CRALRDETLTKARRIKSQYDTAMRRVMCQLEIT-TEF-EVWTAFVMSKPRVGSDYKLQDN 1189
Query: 1009 LKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQ 1068
+ S ++ F+ + NE SA Y+VTY E V+ +L +Q
Sbjct: 1190 VGRESSVLKQHFK----------DQCKNEAGGDLLSFVSAMYRVTY--EEVRIALFEAKQ 1237
Query: 1069 GSAR-------------SVVLLSFAWIANDYLARI 1090
R ++ L+SF W+ D L +
Sbjct: 1238 PHVRPDGRLGTRKITPKTMPLVSFPWLFWDKLGEL 1272
>gi|218188371|gb|EEC70798.1| hypothetical protein OsI_02249 [Oryza sativa Indica Group]
Length = 307
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 170/310 (54%), Positives = 208/310 (67%), Gaps = 21/310 (6%)
Query: 826 MECTPAEAKPLTCHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLA 872
M+ +P EAK L V+ +NLG+ICNAHVVHAD SEYGA DE CI LA
Sbjct: 1 MDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLA 60
Query: 873 KLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENI 932
+LAATAVD PKTGK+ MP HLKPK YPDFM E+ Q+YKS KILGRLYR I+ A + ++
Sbjct: 61 ELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDV 120
Query: 933 SVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFR--- 989
VS EV P D+ YD DLEVPG+ DF A A KCSYD QL+ LL QY V R E
Sbjct: 121 -VSQEV-CTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRV-RTEAELVT 177
Query: 990 -HIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD-FELSDNEKNVLYEQKAS 1047
HI S+ K +S+KQG++++RLK +YSA RKEF+ FE + SD E+ D+EKN+LYE KAS
Sbjct: 178 GHITSLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIDDDEKNLLYEMKAS 237
Query: 1048 AWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVN 1107
AWYQVTYH +WV+KS +L LSFAWI DYLARIK++C + KPV
Sbjct: 238 AWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVE 297
Query: 1108 NLARYVADRI 1117
LA Y+++RI
Sbjct: 298 RLAAYISERI 307
>gi|406868525|gb|EKD21562.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1494
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 262/901 (29%), Positives = 412/901 (45%), Gaps = 160/901 (17%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSY----KRPVFDA 359
+ FE+ + + + + ILN++ ++ F L + V ++I Y ++ V+D
Sbjct: 398 LPFEVRYQLEVCISREILNEYNVTRGFVKKL-SEIASVDAAKARNILEYVAGQEKRVYDP 456
Query: 360 YEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR-------- 411
+D QE L K E P A R+ ITP+ Y+ + + +R
Sbjct: 457 MTIFED-QEALAFTAK-TEIPHYC---AYSRKATITPSTMYFSSPTVETTNRVLRHYARE 511
Query: 412 -----FLRVTFMDEGLQ-TMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
FLRV F DE + +NA V + + +F R+ L +G
Sbjct: 512 NRDGRFLRVQFTDELAEGRINACVDN---------------QKNDELFTRIYRTLFNGIQ 556
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
+ R Y FLAF ++Q R++ A+FF S DI+ WMG F+ K +AKYAAR+G CFS
Sbjct: 557 IGDRHYEFLAFGNSQFRENGAYFFCPTEHLSCDDIRGWMGHFSDIKVVAKYAARLGQCFS 616
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
+T A + ++ ++ D++ NGY F+DG+GKI+P LA ++ L L + PSA+Q R
Sbjct: 617 TTRAINGLSKPDI-VKIADVENNGYTFTDGVGKISPFLAQMISAELGLRTNTAPSAFQFR 675
Query: 585 YAGYKGVVACWP-AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
G KGV+ WP AK+ + +R S +KF + + LEI RF LNRQ IT+LS
Sbjct: 676 LGGCKGVLVVWPDAKEKEVH--IRMSQQKFTAVYNGLEIIRCARFSCATLNRQTITILSA 733
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT--AAIMLSAGFKPQTEP 701
L V DE+F + + + + D A +L + T A M+ GF + +P
Sbjct: 734 LGVPDEVFLKMLSEQLANYQTAMDNDDAAVSLLLRYIDDNQMTINIATMIRNGFMAEKDP 793
Query: 702 HLQGML----TYELGELKECQCFIQVSESSLENCFSK-------------HGSRFAETK- 743
+ +L ++ + LKE I + + + C + HG + AE +
Sbjct: 794 FVLSLLHLWRSWSIKLLKEKAKIIIENGAFVLGCVDETFTLRGYTISTAPHGEQVAEEEL 853
Query: 744 --------------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKG 789
+ +I G ++ +NP L PGD+R+++AVD P LHHL D +VFP G
Sbjct: 854 PQIFLQVPDKSDPNRYNIITGICLVGRNPSLHPGDLRVVQAVDVPALHHLRDVVVFPASG 913
Query: 790 DRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAK----PLTC------- 838
DR + SG DLDGD ++V WDE L P + +C PM + K P+
Sbjct: 914 DRDVPSMCSGGDLDGDDFFVIWDEAL-RPREWNCQPMNYIAPKPKLHNQPVQIVDLMKFF 972
Query: 839 --HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKP 896
+ + +L I +AH+ +D + D CI LA L + AVD KTG+ MP HL+P
Sbjct: 973 VRFMKNDSLPAIAHAHLAQSDALQMSVKDPKCIELASLHSKAVDYVKTGEAAQMPKHLRP 1032
Query: 897 KKYPDFMEIE---EYQTYKSNKILGRLYR---------QIKGAYDENISVSSEVDINPVD 944
+K+P FME + + Y SN+ILG+LY Q +G +D+ I + +D
Sbjct: 1033 RKWPHFMEKKHKPKTAQYHSNEILGQLYDKVETVDFKPQYEGPFDKRILKAYILD----- 1087
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG- 1003
D L+ R K YD + L+ Q + + EF IWS + + G
Sbjct: 1088 ---DAILKT---------VRQIKSKYDTAMKRLMAQQEI-KTEF-EIWSTFVLSRPRVGS 1133
Query: 1004 --ELQERLKHSYSAFRKEFR-QVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
++QE + A + +FR + K S ++ + +A Y++T K
Sbjct: 1134 DYKVQEEIARLSDALKDQFRAECIGKAGS-------KEFAVLGPFVAAMYKIT------K 1180
Query: 1061 KSLDL-LEQGSARSVV----------------LLSFAWIANDYLARIKI---KCQEMANI 1100
+ LD+ L + A VV L+SF W+ L RI +E+ ++
Sbjct: 1181 EELDIALAECRATKVVGDRQVPARRMEPKHMPLISFPWLFEKELGRIATGIDTSEELEDL 1240
Query: 1101 G 1101
G
Sbjct: 1241 G 1241
>gi|154290540|ref|XP_001545863.1| hypothetical protein BC1G_15614 [Botryotinia fuckeliana B05.10]
Length = 1173
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 242/808 (29%), Positives = 386/808 (47%), Gaps = 130/808 (16%)
Query: 301 KEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR-------CQPREVIVTALKHIYSYK 353
K + FE+ + + + + I+N++ + + F + L + R ++ +H YS K
Sbjct: 136 KVNLPFEVRYQLEVCISREIVNEYNIDEKFINSLAELSAQDPAKARNLLEYVAEH-YSSK 194
Query: 354 RPVFD-----------AYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF 402
R ++D ++ L D+ + K P +I + V T +
Sbjct: 195 R-LYDPSSIFTNSEALSFSALTDIPHYCAFSRKATVTPTSILFNSPT---VETTNRVLRH 250
Query: 403 LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKT---GVFKRVKSI 459
++ RFLRV F DE + NS + K +F RV +
Sbjct: 251 YSKENQEGRFLRVQFTDEKFEGR-----------------INSCADKIRNDAIFTRVFRV 293
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI-AKYAAR 518
+S+G + R Y FLAF ++Q R++ A+FF S DI+ WMG F+ N+ AKYAAR
Sbjct: 294 ISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIRQWMGTFSHINVVAKYAAR 353
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
+G CFS+T A + ++ ++PDI+R Y F+DG+GKI+P LA +A LKL P
Sbjct: 354 LGQCFSTTRAIKGLSAPDI-VKIPDIERGRYCFTDGVGKISPYLAQMIASELKLRVDLAP 412
Query: 579 SAYQIRYAGYKGVVACWP-AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQI 637
SA+Q R G KG++ P AKD+ + +R S +KF + + LEI ++F LNRQ
Sbjct: 413 SAFQFRLGGCKGILVVSPDAKDNEVH--IRKSQQKFTAAYNGLEIIRCSQFSSATLNRQT 470
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGF 695
IT+LS L V DE+F + + S + + +A +L + T I M+ GF
Sbjct: 471 ITILSALGVKDEVFLKMLSRQLSDYQSAMSNNAIALGLLNRYIDDNHMTINIAGMILNGF 530
Query: 696 KPQTEPHLQGML----TYELGELKECQCFIQ---------VSESSLENCFSK----HGSR 738
+ EP + +L + + LKE I V E++ ++K +G+
Sbjct: 531 MSEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCVDETNTLRGYTKPTVAYGTT 590
Query: 739 FAETK---------------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCL 783
+ ET+ + VI G ++ +NP L PGD+R+++AV+ P LHHL D +
Sbjct: 591 YKETELPQIFIQVPDRENTTQYNVIEGICLVGRNPSLHPGDLRVVQAVNIPALHHLRDVV 650
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP----AEAKPLTC- 838
VFPQ G+R + SG DLDGD ++V WD++L P++ +C PM A +P+
Sbjct: 651 VFPQSGERDVPSMCSGGDLDGDDFFVIWDKDL-QPTEWNCEPMSYAALDPVALKRPVVVT 709
Query: 839 --------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
++ + +L I +AH+ AD + G D C+ LA+L + AVD KTG+ TM
Sbjct: 710 DLQKFFVKYMKNDSLPSIAHAHLAQADYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATM 769
Query: 891 PSHLKPKKYPDFME-IEE--YQTYKSNKILGRLYRQIKGA---------YDENISVSSEV 938
+L P K+P FME I + + Y S KILG+LY +++ +D+ I + E+
Sbjct: 770 QKYLAPPKWPHFMEKIHQPASKQYHSQKILGQLYDKVESVDFVPQYEEPFDKRILRAYEL 829
Query: 939 DINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYN 998
D + L+ AR K YD + +L Q ++ + EF +WS +
Sbjct: 830 D--------NATLKA---------ARQTKTKYDTAMRRILAQQDI-KTEF-EVWSTFILS 870
Query: 999 SRKQG---ELQERLKHSYSAFRKEFRQV 1023
K G +LQE + A + FR V
Sbjct: 871 KPKVGSDYKLQEDMAVITGALKDRFRSV 898
>gi|451852221|gb|EMD65516.1| hypothetical protein COCSADRAFT_354694 [Cochliobolus sativus ND90Pr]
Length = 1365
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 250/838 (29%), Positives = 387/838 (46%), Gaps = 143/838 (17%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYE-- 361
+SF + + + + G + +H ++ F L + V L+ + ++ ++ E
Sbjct: 404 LSFPVRYQLEVCLSNGYIKEHNITIEFLKNLELLESQQAVQLLEKVADRQKIYYNPMEIF 463
Query: 362 -------KLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTK---AYWFLESKDV--- 408
K K CL++ R + ITPT A +E+ +
Sbjct: 464 DIPIKAMKRKIPSYCLLQ-----------------RSVTITPTMMHVATPVMETSNRIIR 506
Query: 409 -----ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
ADRF+RV F DE + + + + VF RV + +G
Sbjct: 507 KYEADADRFIRVRFTDEKSEG---------------QLRNQPNGRAEAVFDRVFRAMKNG 551
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLC 522
+ GR Y FLAF ++Q R++ A+F++ S DI+ +GEF + ++K+AAR+G C
Sbjct: 552 IVVAGRYYEFLAFGNSQFRENGAYFYAPTASKSANDIRMSLGEFDHIRTVSKFAARLGQC 611
Query: 523 FSSTHA---TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPP 577
FS+T A TV++ +PD++RNG+VF+DG+GK++P LA AQ L L + P
Sbjct: 612 FSTTRAMGVTVKLV------IVPDVERNGFVFTDGVGKLSPFLAQMAAQELGLTNAFTDP 665
Query: 578 PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQI 637
PS +Q R G KGV+A P +G + +R S KF++ HT LEI + F + NRQI
Sbjct: 666 PSLFQFRLGGSKGVLALDP-NLNGNEVHIRRSQYKFRAPHTGLEIIRSSSFATPYFNRQI 724
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTAS--CAEQGNTAAIMLSAGF 695
I +LS L V D +F Q M + + + +A + L + + T A M+ GF
Sbjct: 725 ILVLSYLGVQDAVFLRKQEDMMNDYSSAMTDEIIALQKLRKNIDINQITLTMAAMVLDGF 784
Query: 696 KPQTEPHLQGMLTY----ELGELKECQCFIQVSESSLENCFSKHG----------SRFAE 741
EP + +L + LKE + + L C + G SR
Sbjct: 785 MGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETGTLKGHLNDPQSRRDA 844
Query: 742 TKKLQ---------------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
T+ + +I G ++A+NP L PGDVR++ AV+ P LHHL
Sbjct: 845 TRDEKLATLPEIFLRVSDPESKGHYIIIEGICILARNPSLHPGDVRVVRAVNVPALHHLK 904
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE-------- 832
+ +VFPQ GDR N SG DLDGD Y V WD +L+P PPM+ TP +
Sbjct: 905 NVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDRDLVPELINE-PPMDFTPEKPLEIDGPI 963
Query: 833 -----AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
+K ++ + LG I +AH+ AD +E D C+ LA+L + AVD PK+G
Sbjct: 964 SAMDMSKFFVNYIKNDALGPIAHAHLAQADFNEKCIGDAICLELAELHSRAVDFPKSGIP 1023
Query: 888 VTMPSHLKPKKYPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
M L+P+K+P FME + +Q Y S KILG LY ++K I + + NP D
Sbjct: 1024 AEMKRELRPRKWPHFMEKKYLSPHQIYNSKKILGLLYDEVKL-----IDFEPQWE-NPFD 1077
Query: 945 IH----YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSM-PKYNS 999
+D D E+ A + K SYD L L+ ++ + + EF WS+ ++
Sbjct: 1078 KRILEAFDLDQEL------LDKAASLKLSYDEALRRLMAKHGI-KTEF-EAWSVFVLVHN 1129
Query: 1000 RKQGELQ--ERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYH 1055
+ G+ + E + +A + +FR + + ELSDN +A Y VT H
Sbjct: 1130 HESGDYKFAEEFGRTIAALKHQFRG---ECRTAAELSDNNDWARLGPFVAAMYTVTAH 1184
>gi|169595008|ref|XP_001790928.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
gi|111070612|gb|EAT91732.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
Length = 1523
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 267/920 (29%), Positives = 410/920 (44%), Gaps = 129/920 (14%)
Query: 152 GPASGTDFLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCEFKVFL-----VREIDIVKQ 206
G A G L+ PF+ +F K L + +H + +L RE DIV+
Sbjct: 363 GSAPGQGALIIPFESAPQFFVQKQQVEILSNDNDHTSFSTREETWLDWYTWFRETDIVES 422
Query: 207 YSELPRVAILLWLASSPRICYR-TAKDDIEVLVPFDLLDDDDPWIRT--TDFSPSGA--- 260
+ + P + ++ A DI + +L D+ + + T+F+ + A
Sbjct: 423 -------GVRAAMQERPLMNHKDMAIIDIGRWTTYRILLDNAIFTKPQYTEFASALADYG 475
Query: 261 --IGQCNS---KQRVQEDC--LSQPVTIREEPDFEVPVEDPFFCMHYKEGV--SFEIMFL 311
I C+ K R+ L Q T P E P F + + SF I +
Sbjct: 476 VEIKDCSDYDIKNRMASPLWKLLQEETSGTHPHLEAPTSSSGFDELFAGQIYLSFPIRYQ 535
Query: 312 VNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLI 371
+ A + G L +H ++ F + L PR + K V D E D E
Sbjct: 536 LEACLSNGYLKEHTVTAEFLERLAKNPRRAVYLLEK--------VVDKQETYYDPMEIFE 587
Query: 372 KNPKLNEGPKNIDDIAEVRRLVITPTK---AYWFLESKD--------VADRFLRVTFMDE 420
+ + K R +ITP+ A +E+ + +ADRFLRV F DE
Sbjct: 588 IRTRGSLEKKVPSYCLLQRSAIITPSTIHVASPIMETSNRITREYAAIADRFLRVKFSDE 647
Query: 421 GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQ 480
+ +++ I + + F RV+ + +G + GR Y FLAF ++Q
Sbjct: 648 KTEG------------VLRSIPNG---KADATFDRVRRAMKNGIVVAGRYYEFLAFGNSQ 692
Query: 481 LRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDH 539
R+H A+F++ S DI++ +G F K +AK+ AR+G CFS+T A + + T V
Sbjct: 693 FREHGAYFYAPTSTKSADDIRSSLGRFDHIKTVAKFGARLGQCFSTTRA-MRVKVTIV-- 749
Query: 540 ELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS--PPPSAYQIRYAGYKGVVACWPA 597
++PDI+RNGY F+DG+GK++ LA AQ L L + PPS YQ R G KGV+A P
Sbjct: 750 KIPDIERNGYCFTDGVGKLSLFLAQMAAQELGLSNAFDDPPSLYQFRLGGCKGVLALDP- 808
Query: 598 KDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQAS 657
K G + +R S KF++ LEI + F NRQII +LS L V D + Q
Sbjct: 809 KITGNEVHIRPSQLKFEAKFLGLEIIRSSALATPFFNRQIIVVLSDLGVPDNVLIQKQQE 868
Query: 658 MASKLNLMLVASDVAFEVLTA--SCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYEL 711
M + + D A L + T A M+ GF EP + +L +
Sbjct: 869 MVNDYEQAMTDKDTAIAKLRKHIDMNQTTLTMAGMVIDGFMESREPFMMSLLRLWRAATI 928
Query: 712 GELKECQCFIQVSESS-LENCFSKHG------------SRFAETKKLQ------------ 746
LKE + I + + + + C + G S + K+Q
Sbjct: 929 KNLKE-KARIAIEDGAFVLGCVDESGTLKGHLNDPQSRSDASRQDKMQTLPEIFLQVDDT 987
Query: 747 ---------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
++ G V+A+NP L PGD+R++ AVD P LHHL + +V PQ GDR N
Sbjct: 988 EANKRGHYKIVKGVCVLARNPSLHPGDLRVVRAVDVPALHHLKNVVVLPQTGDRDLANMC 1047
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHAD 857
SG DLDGD Y V WD++LI P + + ++ + +LGQI AH+ AD
Sbjct: 1048 SGGDLDGDDYMVLWDKDLI-------PELITLSDISDFFVTYMQNDSLGQIAYAHLAQAD 1100
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME---IEEYQTYKSN 914
+ G C+ LAKL + AVD PK+G M L+PK++P FME ++ ++ Y+S
Sbjct: 1101 VNHEGVGSGTCLELAKLHSQAVDYPKSGIPAQMSQDLRPKRWPHFMEKKHLQAHKIYRST 1160
Query: 915 KILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQL 974
++LG+LY Q++ D + D +D Y+ D E+ + A + K YD
Sbjct: 1161 RVLGKLYDQVE-LVDFKPQWENAFDFRILDA-YEVDEEL------LSKATDIKALYDEAF 1212
Query: 975 NGLLGQYNVNRKEFRHIWSM 994
L+ ++ + R EF WS+
Sbjct: 1213 KRLMAKHGI-RTEF-EAWSV 1230
>gi|315047102|ref|XP_003172926.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311343312|gb|EFR02515.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1455
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 220/713 (30%), Positives = 340/713 (47%), Gaps = 118/713 (16%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R +TP+ Y+ + D ADRFLRV F DE + + S Y
Sbjct: 475 MRSATVTPSTIYFHTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYE---GRINSTY---- 527
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+N + VF RVK +++G + R Y FLAF ++Q R+H A+FF+ + +
Sbjct: 528 -----NNCMDE---VFTRVKRTMTNGVIVGDRHYEFLAFGNSQFREHGAYFFASLPNLTA 579
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F+ K +AK+AAR+G CFSST A P T E+ +I+RNGY FSDG+G
Sbjct: 580 SNIRAWMGHFSDIKIVAKHAARLGQCFSSTKAVTGCPVTI--REIDEIERNGYTFSDGVG 637
Query: 557 KITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA + KL PPS +Q R G KG++ P + ++ S KF
Sbjct: 638 RISKFLAQMIMTEFKLKTPSEEPPSVFQFRLGGCKGILTVSPEAQRR-EVHIKKSQYKFA 696
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
+ H LEI W++F +LNRQ+I +LS L V+DEIF M + + + A
Sbjct: 697 AVHNGLEIIRWSQFAAAYLNRQLIVVLSALGVTDEIFIKKLRLMLEDMEQAMTSETKAMS 756
Query: 675 VLTASCAEQGNT--AAIMLSAGFKPQTEPHLQGML----TYELGELKE------------ 716
+L T A M+ GF+ ++P + +L +++ LKE
Sbjct: 757 LLQKQVDPNQMTLLLAQMVHDGFQGTSDPFVTSLLELWRAWQIKYLKEKAKICIDGGACL 816
Query: 717 ---------CQCFIQVSESSLENCFSKHGSRFAET----------KKLQVINGFVVIAKN 757
+ + + + S++ + + E + ++I G ++A+N
Sbjct: 817 FGCLDETATLKGYHEKTRPSIDATYEERLGYLPEIFVQVFDAEAERNYKIIEGPCILARN 876
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R++ AV+ P LHHL D +VF Q GDR + SG DLDGD Y V WD++L+P
Sbjct: 877 PSLHPGDIRVVRAVNVPALHHLKDVIVFSQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 936
Query: 818 -PSKKSCPPMECTPAEAKPLT-------------CHVNHQNLGQICNAHVVHADRSEYGA 863
P PM+ T + A+ LT ++ + L QI +AH+ AD E G
Sbjct: 937 LPKDWFRQPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADFLEDGV 996
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ----TYKSNKILGR 919
D+ C+ LA+L + AVD K+G M L P+K+P FME ++Y+ Y S KILG+
Sbjct: 997 NDKRCVQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFME-KKYKPKEAQYHSKKILGQ 1055
Query: 920 LYR---------QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSY 970
+Y +++ +DE I + D+ V S + A+ K Y
Sbjct: 1056 IYDIVERVEFRPKLEAPFDERI--------------LNCDISV--SEEMVLAAKKLKALY 1099
Query: 971 DGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEF 1020
D + ++ Q+ + + EF +WS + N K + E L SA R+ F
Sbjct: 1100 DADMRRIMAQHEI-KTEFE-VWSTFVLGHANMSKDYKFHEELGQISSALRERF 1150
>gi|429860171|gb|ELA34917.1| suppressor of ascus dominance [Colletotrichum gloeosporioides Nara
gc5]
Length = 1353
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 264/876 (30%), Positives = 412/876 (47%), Gaps = 131/876 (14%)
Query: 303 GVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEK 362
+ F++ + + + +GI+ ++ ++ F + L ++ L++ ++ V+D +
Sbjct: 441 ALDFQVHYQLEVCISRGIICEYAITREFLERLAAVNKDRAKWTLEYFADREKRVWDLNDI 500
Query: 363 LKDVQECL-IKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------FLESKDVAD 410
+D + L NP + P+ I R++V+TPT Y+ + + D
Sbjct: 501 FEDEEANLHFPNPLM---PRYCTTI---RKVVVTPTTVYYSSPGVESSNRVLRKFSEYQD 554
Query: 411 RFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
RFLRV F DE Y I D FS RV L+ G + R
Sbjct: 555 RFLRVQFTDE-----------LYYGKIYSDSGEELFS-------RVYRTLAKGITIGSRH 596
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT 529
Y FLAF ++Q+R+ + +FF S I++WMG+F KN+AKYAAR+G CFS+T
Sbjct: 597 YEFLAFGNSQIRECAVYFFCPTDHRSCDCIRDWMGDFGHIKNVAKYAARIGQCFSTTR-- 654
Query: 530 VEIPPTEVDHELP--DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS--PPPSAYQIRY 585
EIP T V + +P D++RNG+ FSDG+GKI+ LA V + D + PSA+Q R
Sbjct: 655 -EIPGTTVANIVPIEDVERNGFCFSDGVGKISQLLAHIVVVEMSSDDACISVPSAFQFRM 713
Query: 586 AGYKGVVACWPAKDDGIR--MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
G KG++A WP D R + +R S +KFK+ LEI + + LNRQ IT+L++
Sbjct: 714 GGCKGMLAVWP---DAKRQEVHIRPSQEKFKATFNGLEIIKYAQHSIATLNRQTITVLTS 770
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGF-KPQT- 699
L V E + + A +L E + I ++ GF P+
Sbjct: 771 LGVRAETILKLAERQIKNYQKAMNDRVAAASLLGQYIDENLTSLTIKDLVGWGFMDPEIQ 830
Query: 700 EPHLQGML----TYELGELKECQCFIQVSESSLENCFSKHG-----SRFAETKK------ 744
EP + +L + + LKE I + L C + G S E KK
Sbjct: 831 EPFVLTILDLWRIWSMKLLKEKARVIVEESAFLLGCLDETGSLRGYSTATEGKKTNNIED 890
Query: 745 -----LQV-----------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
LQV + G ++ +NP L PGD+R++EAVD P+LHHL + +VFP+
Sbjct: 891 LPQVFLQVESPSGSGKFTCVTGLCIVGRNPSLHPGDLRVVEAVDVPQLHHLRNVVVFPRN 950
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM---ECTPA------EAKPLTC- 838
GDR + SG DLDGD ++V W+++LIP PPM + TPA + K L
Sbjct: 951 GDRDVPSMMSGGDLDGDDFFVMWNQDLIPKDWHQ-PPMNYTQPTPAVLRRDVQVKDLRTF 1009
Query: 839 ---HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
++ + +L I AH+ HAD+S G D+ C+ LA L + AVD KTG +P L
Sbjct: 1010 FVRYMQNDSLALIATAHLAHADKSLLGVKDQKCLQLAALHSKAVDYVKTGDPAKLPPALN 1069
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDL--E 952
PK+ P F+ QTY S+ LG+LY I+ +V NP+ + +D +
Sbjct: 1070 PKERPHFLG-SRGQTYHSSTALGKLYDMIQ-----------DVGFNPLYEKRFDNRVLNR 1117
Query: 953 VPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG---ELQERL 1009
+ D + AR K YD + L+GQ +++ EF IW+ + + G + QE +
Sbjct: 1118 FNLTEDLLSKARAVKVQYDMAMRRLMGQRDID-TEF-EIWTGFALSKPRVGSDYKQQEEI 1175
Query: 1010 KHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL--- 1066
S + FR++ + + DN + +A Y+VT ++ V +L
Sbjct: 1176 GRESSLLKHRFREICYQEAGGSRVFDNIGPFV-----AAMYKVT--QDEVNAALAGEYED 1228
Query: 1067 EQGSARSVVLLSFAWIANDYLARI---KIKCQEMAN 1099
E+ +S+ L+SF WI + + RI K+K N
Sbjct: 1229 EEHKRQSMPLISFPWIFHWIMGRIATGKVKTTPTIN 1264
>gi|340521639|gb|EGR51873.1| predicted protein [Trichoderma reesei QM6a]
Length = 1161
Score = 306 bits (784), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 243/777 (31%), Positives = 359/777 (46%), Gaps = 113/777 (14%)
Query: 408 VADRFLRVTFMDE---GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGF 464
+ DRFLRV F++E G M S K V+K++ L G
Sbjct: 370 IQDRFLRVQFVEETEFGRMAM-------------------SCRNKEDVWKKILRTLYQGI 410
Query: 465 NLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCF 523
+ R Y FLAF S+QLR A+FF S DI+ WMGE + +AKYAAR+G CF
Sbjct: 411 QIGDRHYQFLAFGSSQLRQCGAYFFCPTDHISCDDIRRWMGEVGHIRIVAKYAARLGQCF 470
Query: 524 SSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQI 583
S+T +P +V +PD++RNGY F+DG+G I+ +A + + L LD PSA+Q
Sbjct: 471 STTREMRGLPIPDV-RSIPDVERNGYCFTDGVGIISDFMAQMIMEELTLDVYAEPSAFQF 529
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KGV+ WP G + +R S +KFK+ +LEI ++ LNRQ IT+L
Sbjct: 530 RMGGCKGVLVVWPQATKG-EVCIRQSQEKFKAEVKNLEIIKCAKYSSATLNRQTITILEC 588
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI---MLSAGFKPQ-- 698
L V+ + F + + +DVA E+LT +C ++ + I +L AGFK
Sbjct: 589 LGVTKKAFLDILEEQIRLYEEAMGKNDVAIEMLT-NCVDENQSTLILAELLQAGFKTDKV 647
Query: 699 TEPHLQGML----TYELGELKE------------CQCFIQVS---------ESSLENCFS 733
EP + +L ++ L LKE C + S E S + S
Sbjct: 648 QEPFVANLLSLWRSWSLKLLKEKARIPVDKSAFVLGCVDETSTLRGHFIATEGSSDKDIS 707
Query: 734 KHGSRFAET------KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
K F + K V+ G V+ +NP L PGD+R++EAVD P LHHL D +VFP
Sbjct: 708 KLPQIFLQVSDSKIYNKTHVVKGLCVVGRNPSLHPGDIRVVEAVDIPGLHHLKDVVVFPS 767
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQ 847
GDRP N SG DLDGD ++V W+ L+ P + P M T + L VN +L
Sbjct: 768 TGDRPVPNMLSGGDLDGDDFFVIWEPTLL-PEIWNHPAMNYTSPSPETLDREVNVDDLRD 826
Query: 848 -------------ICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
I AH+ ADR G + C+ LA L + AVD PKTG+ + +
Sbjct: 827 FFVKYMKNDVLPLIATAHLALADR--LGPLSKICLHLADLHSQAVDYPKTGQPAEWNAAM 884
Query: 895 -KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEV 953
P+++P FM E+ +Y S K LG +Y ++K S+ + D D
Sbjct: 885 HNPQQWPHFM--EKKNSYISPKALGDIYNRVKQQ-----SIQFQPDWETAFDRRILDRFE 937
Query: 954 PGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHS 1012
P + DAR K YDG + +L +N+ + E W+M K + + QE L
Sbjct: 938 PDNATLR-DARRIKSQYDGAVRRILVHHNLETEFELYTSWAMSKPPLGSEYKRQEDLGKE 996
Query: 1013 YSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVT----------YHREWVKKS 1062
+ A ++ FR ++ E + ++ +A Y++T +HR ++
Sbjct: 997 FDAVKQRFR------DACIEAAGGHDEAKIDRFVAAMYKITEQEVKIALFEHHRGPTNEA 1050
Query: 1063 --LDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+ + ARS+ L+SF WI + RI A GK KP +++ R+
Sbjct: 1051 GVMKPARELQARSMPLISFPWIFPWVMIRI-------ATDGKCKPKDSILAAAHRRV 1100
>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 215/614 (35%), Positives = 326/614 (53%), Gaps = 83/614 (13%)
Query: 246 DDPWIRTTDFSPSGAIGQCNS-----KQRVQEDCLSQPVTIREEPDFEVPVEDPF-FCMH 299
DD W+RTTDF+PS IG +S ++ V + E + + ++ F F +
Sbjct: 41 DDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFIS 99
Query: 300 YK----------EGVS--FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTA 345
K EG++ ++I+F +++++ G + L+ FF L+ Q R V I A
Sbjct: 100 QKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQA 159
Query: 346 LKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFL 403
L+ +Y K +D L + + +K + + P +DD + VRR+++TP K Y+
Sbjct: 160 LEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCG 219
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+V++R FLRV+F+DE + + + L + K T N +T +
Sbjct: 220 PEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNI 271
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KN 511
++R+ S L GF + +++ FLAFSS+QLRD+S W F+ + DI+ WMG+F+ KN
Sbjct: 272 YERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKN 331
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQI 569
+AKYAAR+G F S+ T+ + E++ +PD+K +G YVFSDGIGKI+ D A VA
Sbjct: 332 VAKYAARLGQSFGSSTETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASK 390
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ 629
L +P SA+QIRY GYKGVVA P +++SLR SM K++S + L++ W+++Q
Sbjct: 391 CGLQYTP--SAFQIRYGGYKGVVAVDPYS--SMKLSLRKSMSKYESDNNKLDVLGWSKYQ 446
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAA 688
P FLNRQ+ITLLSTL V D+I Q +L+ +L S A E L S E N
Sbjct: 447 PCFLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 506
Query: 689 IMLSAGFKPQTEPHLQGML-TYELGELKEC---------------------------QCF 720
ML+ G+ P EP L ML T+ +L + Q F
Sbjct: 507 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVF 566
Query: 721 IQVSESSLENCFSKHGSRFAETKKLQ---VINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
+Q + + FS+ F ++ ++ G VV+AKNPCL PGD+R+L AV+ P LH
Sbjct: 567 VQFTGAGHRE-FSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVNVPALH 625
Query: 778 HLCDCLVFPQKGDR 791
H+ DC+VFPQKG R
Sbjct: 626 HMVDCVVFPQKGKR 639
Score = 155 bits (391), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 172/362 (47%), Gaps = 69/362 (19%)
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL--------------- 836
PH NE SGSDLDGD+Y+V WD ++IPP + PME PA + L
Sbjct: 702 PHPNECSGSDLDGDIYFVCWDPDMIPP--RQVQPMEYPPAPSIQLDHDVTIERGDWPVCA 759
Query: 837 -----------------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAK 873
T ++ + +LG I NAHVV ADR A + C LA+
Sbjct: 760 TTVQVLRNSFSPVCLLQEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAE 819
Query: 874 LAATAVDSPKTGKIVTMPSHLKPKKYPDFMEI-EEYQTYKSNKILGRLYRQIKGAYDENI 932
L + AVD PKTG +PS L+PK+YPDFM+ + TY S +++G+L+R++K +
Sbjct: 820 LCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVK----DKA 875
Query: 933 SVSSEVDINPVDI---HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EF 988
+S I D+ YD DLEV G D+ +A + K YD +L L+ Y + + E
Sbjct: 876 PQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMEYYGIKTEAEI 935
Query: 989 RHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASA 1048
M + + + E + + A RKE R F++ N ++ KASA
Sbjct: 936 LSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDIDDML---------PKASA 986
Query: 1049 WYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNN 1108
WY VTYH + QG R +SF W D L +IK +E A +++PV N
Sbjct: 987 WYHVTYHPTY----WGCYNQGLKRD-HFISFPWCVYDQLIQIK---KEKA---RNRPVLN 1035
Query: 1109 LA 1110
L+
Sbjct: 1036 LS 1037
>gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]
Length = 1483
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 257/895 (28%), Positives = 402/895 (44%), Gaps = 122/895 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + + + + G+L+++ + F L + L+ + R F+ E
Sbjct: 473 LDFPVRYQLEVCISHGLLDEYSIGAQFLGRLISFDTDRARMLLEGVAEANRQFFEPMEIF 532
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------FLESKDVADRF 412
D + L P P VRR VITPT Y+ + D+ DRF
Sbjct: 533 DD-PKILHYWPNARTPPY----ATLVRRAVITPTAIYFKSPCVELTNRILRKYSDLNDRF 587
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE K +S ++ +F RV ++ +G + R Y
Sbjct: 588 LRVQFTDEITSG--------------KIFSSQDSTKDDNLFTRVHRVMRNGIVIGDRHYR 633
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVE 531
FLAFS++Q R++ A+FF + I+ WMG+F +++ K+AARMG CF++T
Sbjct: 634 FLAFSNSQFRENGAFFFCNTDHVTCESIREWMGDFRHIRSVGKFAARMGQCFTTTRQVNG 693
Query: 532 IPPTEVDHELPDIKRNG----YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAG 587
I ++ ++ DI++ + F+DG+GKI+P LA +A L +P S +QIR G
Sbjct: 694 ISIPKI-RQIGDIQQQTGDHIWNFTDGVGKISPFLATLIANERNLPETP--SCFQIRMGG 750
Query: 588 YKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVS 647
KGVV WP + +R S +KFK+ + LEI + F LN+Q+I +L L V
Sbjct: 751 CKGVVVTWPDVPPS-EVHVRPSQEKFKAVYNGLEIIKTSAFSHATLNKQVIPVLVALGVD 809
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIM-LSAGFKPQTEPHLQGM 706
+F ++ S ++ L S A E+L + E T + + F EP L +
Sbjct: 810 KSVFVSMLDSELTEYEEALADSMRAGELLRSQVDENQTTLTLAEMVDTFMDSEEPFLWTL 869
Query: 707 LT----YELGELKE---------------------CQCFIQVSESSLENCFSK------- 734
L + L LK+ + Q +E +N
Sbjct: 870 LRLWKCWVLKRLKQKFAISVKNSAMVFGVVDEIGVLRGHSQATEGRRDNNIESLPQIFLQ 929
Query: 735 ---HGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
GS T +VI G V+ +NP L PGDVR++EAVD EL HL + +VFP+ GDR
Sbjct: 930 VPVEGSDGKSTTNYEVITGLCVVGRNPSLHPGDVRVVEAVDALELRHLKNVVVFPRTGDR 989
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME-----CTPAEAKP----------- 835
+ SG D+DGD Y+V WDE LI P + PP++ TP KP
Sbjct: 990 DIPSMCSGGDMDGDDYFVYWDERLI-PLEWYHPPLDHDAESSTPGLDKPEDVTIEDVTRF 1048
Query: 836 LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
++ + +LG+I AH AD+ G + CI LAKL + AVD K+GK M HL+
Sbjct: 1049 FAQYMKNDSLGRIATAHFAQADQLSGGVKNPKCIELAKLHSKAVDYIKSGKPAVMQRHLQ 1108
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPG 955
P+K+P +ME E+ +Y S LG++Y +IK E + E+ P D+ + ++
Sbjct: 1109 PRKWPHWMEREKKSSYPSVSALGQIYNRIK---IEEFHAAYEM---PFDVRILSRYQLED 1162
Query: 956 SVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG---ELQERLKHS 1012
D A+A K +YD + L+GQ+ EF IWS + + G +LQE +
Sbjct: 1163 --DTLAEAGKIKEAYDIAMRRLMGQHEAPVTEF-EIWSTFILSKPRVGSDYKLQENVGRE 1219
Query: 1013 YSAFRKEFR------QVFEKMNSDFELSDNEKNV-LYEQKASAWYQVTYH------REWV 1059
+A ++ FR +F S + N+ ++ +A Y VT++ RE
Sbjct: 1220 MAALKERFRAECMTAATGNTQAQEFTFSSSMVNLEKLDRFVAAMYTVTHNEVRAAARERS 1279
Query: 1060 KKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVA 1114
D + + L+SF W+ + LAR+ + G +P+ N +A
Sbjct: 1280 MPRPDHDGEPEEVQMPLISFPWLFHRELARVA-----LGRGGDVRPLQNSGGSLA 1329
>gi|261204627|ref|XP_002629527.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239587312|gb|EEQ69955.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1633
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 243/764 (31%), Positives = 364/764 (47%), Gaps = 100/764 (13%)
Query: 402 FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
F ++ ADRFLRV F DE Y+ I + + NS + V+ RV L
Sbjct: 668 FRYHREHADRFLRVRFCDEK-----------YIGKIYPNNSGNSQCMEK-VYARVLRTLQ 715
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMG 520
G + RRY FLAF ++QLR+H A+FF+ + + +I+ MG+ + +AKYAAR+G
Sbjct: 716 HGITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLG 775
Query: 521 LCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL--KLDGSPPP 578
CFS+T A P ++ ++ DI+RNGYVFSDG+G+++ L + L K PP
Sbjct: 776 QCFSTTRAVTSC-PVQIK-KIDDIERNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEPP 833
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
S +Q R G KG++A P + +R S KF + H LEI ++ F LNRQ+I
Sbjct: 834 SVFQFRLGGCKGILAVSPEARQR-EVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLI 892
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFK 696
+LS L DE+F + M + L + D A +L T + M+ GF+
Sbjct: 893 LILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQ 952
Query: 697 PQTEPHLQGML----TYELGELKECQCFIQVSESS-LENCFS--------------KHGS 737
EP + +L T+++ LKE + I + E + L C K S
Sbjct: 953 GSREPFVSSLLELWRTWQIKYLKE-KAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANS 1011
Query: 738 RFAET----------------KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD 781
+ E K VI G ++A+NP L PGD+R+++AVD P LHHL D
Sbjct: 1012 TYQERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPALHHLRD 1071
Query: 782 CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA---KPLTC 838
+V PQ GDR N SG DLDGD Y V WD++++P P C P + +T
Sbjct: 1072 VVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWFHEPMDNCAPKPEVLDRDVTV 1131
Query: 839 ------HVNH-QN--LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVT 889
+VN+ QN L QI AH+ AD E G DE CI LA L + AVD K+G V
Sbjct: 1132 DDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKCIQLAALHSAAVDYNKSGIPVR 1191
Query: 890 MPSHLKPKKYPDFMEIE---EYQTYKSNKILGRLYRQIKGAYDENISVSSEVD-INPVD- 944
M +LKPK +P FME + + Y+S KILG+LY +I + S++ ++P +
Sbjct: 1192 MTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLYDMAS-----HIDIRSKIQFLSPEER 1246
Query: 945 IHYDTDLEVPG-SVD--FTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYN 998
+D + G VD + A + K YD + ++ ++ + + +WS +
Sbjct: 1247 PQFDKRILKSGIEVDEKLLSVATDLKMQYDTDMRRIMARHEIETE--LEVWSTFVLSHSE 1304
Query: 999 SRKQGELQERLKHSYSAFRKEFRQVFEKM--NSDFELSDNEKNVLYEQKASAWYQVTYHR 1056
+ E + SA R++F + ++ +DFE A A Y+VT +
Sbjct: 1305 MSNDYKFHEDIGRISSALREKFSTLCQEKAGGNDFE--------HLAPLAVAMYKVTSEQ 1356
Query: 1057 ---EWVKKSLDLLEQGSA-RSVVLLSFAWIANDYLARIKIKCQE 1096
+KS L+E + + L+SF W+ L +I C E
Sbjct: 1357 MEAAMAEKSAVLIENNKMEKRLPLISFPWVLQQVLGKIANGCFE 1400
>gi|327353920|gb|EGE82777.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1672
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 260/873 (29%), Positives = 399/873 (45%), Gaps = 117/873 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + + + M +N++ + ++F L + L+H+ K +D E
Sbjct: 604 LPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTIYYDPMEIF 663
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
I PK + +R +TP+ + + S D ADRF
Sbjct: 664 N------IPFPKGATNGRIPGHCCYIRSADVTPSTICYDIPSVDTSNRVFRYHREHADRF 717
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE Y+ I + + NS + V+ RV L G + RRY
Sbjct: 718 LRVRFCDEK-----------YIGKIYPNNSGNSQCMEK-VYARVLRTLQHGITIGDRRYE 765
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVE 531
FLAF ++QLR+H A+FF+ + + +I+ MG+ + +AKYAAR+G CFS+T A
Sbjct: 766 FLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQCFSTTRAVTS 825
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL--KLDGSPPPSAYQIRYAGYK 589
P ++ ++ DI+RNGYVFSDG+G+++ L + L K PPS +Q R G K
Sbjct: 826 C-PVQIK-KIDDIERNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEPPSVFQFRLGGCK 883
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++A P + +R S KF + H LEI + F LNRQ+I +LS L DE
Sbjct: 884 GILAVSPEARQR-EVHIRRSQFKFPASHNGLEIIRHSHFSYATLNRQLILILSALGTPDE 942
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML 707
+F + M + L + D A +L T + M+ GF+ EP + +L
Sbjct: 943 VFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQGSREPFVSSLL 1002
Query: 708 ----TYELGELKECQCFIQVSESS-LENCFSKHGS-----RFAETK-------------- 743
T+++ LKE + I + E + L C + + R A K
Sbjct: 1003 ELWRTWQIKYLKE-KAKIAIDEGAFLLGCIDESKTLKGYFRSARPKANSTYQERVDCLPE 1061
Query: 744 -----------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRP 792
K VI G ++A+NP L PGD+R+++AVD P LHHL D +V PQ GDR
Sbjct: 1062 IFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPALHHLRDVVVLPQTGDRD 1121
Query: 793 HTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA---KPLTC------HVNH- 842
N SG DLDGD Y V WD++++P P C P + +T +VN+
Sbjct: 1122 LANICSGGDLDGDDYIVIWDKSMLPTDWFHEPMDNCAPKPEVLDRDVTVDDITKFYVNYM 1181
Query: 843 QN--LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYP 900
QN L QI AH+ AD E G DE CI LA L + AVD K+G V M +LKPK +P
Sbjct: 1182 QNCCLSQIARAHMALADFQEDGVKDEKCIQLAALHSAAVDYNKSGIPVRMTRNLKPKVWP 1241
Query: 901 DFMEIE---EYQTYKSNKILGRLYRQIKGAYDENISVSSEVD-INPVD-IHYDTDLEVPG 955
FME + + Y+S KILG+LY +I + S++ ++P + +D + G
Sbjct: 1242 HFMERKMKNKNAEYRSAKILGQLYDMAS-----HIDIRSKIQFLSPEERPQFDKRILKSG 1296
Query: 956 -SVD--FTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERL 1009
VD + A + K YD + ++ ++ + + +WS + + E +
Sbjct: 1297 IEVDEKLLSVATDLKMQYDTDMRRIMARHEIETE--LEVWSTFVLSHSEMSNDYKFHEDI 1354
Query: 1010 KHSYSAFRKEFRQVFEKM--NSDFELSDNEKNVLYEQKASAWYQVTYHR---EWVKKSLD 1064
SA R++F + ++ +DFE A A Y+VT + +KS
Sbjct: 1355 GRISSALREKFSTLCQEKAGGNDFE--------HLAPLAVAMYKVTSEQMEAAMAEKSAV 1406
Query: 1065 LLEQGSA-RSVVLLSFAWIANDYLARIKIKCQE 1096
L+E + + L+SF W+ L +I C E
Sbjct: 1407 LIENNKMEKRLPLISFPWVLQQVLGKIANGCFE 1439
>gi|295667341|ref|XP_002794220.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286326|gb|EEH41892.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1273
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 236/746 (31%), Positives = 355/746 (47%), Gaps = 89/746 (11%)
Query: 406 KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
++ ADRFL V F DE + M + Y A IV V+ RV + +G
Sbjct: 492 REYADRFLHVRFTDE--KNM-GKIFPYSNANIV---------CMNEVYTRVTLTMKNGIT 539
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFS 524
+ R Y FLAFS+ QLR+H+A+FF+ + + +I+ +G+F +N+AK+AAR+G CFS
Sbjct: 540 IGDRCYEFLAFSNAQLREHAAYFFASLPHLTAANIRAQLGKFNQIRNVAKHAARLGQCFS 599
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD--GSPPPSAYQ 582
ST A P V E+ DI+RNGY FSDG+G I+ LA + ++ PPS +Q
Sbjct: 600 STRALNGCPVQIV--EIDDIERNGYTFSDGVGLISTFLAQMIQSEFAIETLSGEPPSVFQ 657
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R G KG++ +K + +R S KF + H LEI + F LNRQ+I +LS
Sbjct: 658 FRLGGCKGILTV-SSKAHRREVHIRKSQYKFAAPHNGLEIIRHSSFCFASLNRQLIIVLS 716
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTE 700
+L + DEIF M L L + + + A +L T + M+ GF+ +
Sbjct: 717 SLGIPDEIFVKKLQVMLENLELAMTSQEQAVNLLQTYVDPNQMTLVLADMVLDGFQQSQD 776
Query: 701 PHLQGML-TYELGELKECQCFIQVS---ESSLENCFSKHGSR------------------ 738
P + +L + + ++K + +++ + L C + GS
Sbjct: 777 PFVTSLLELWRVWQIKYLKAKAKIAIDKGAFLLGCLDETGSLKGYFRSKRPGGGATYEQK 836
Query: 739 -------FAETKK-----LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
F + + +VI G ++A+NP L PGD+R+++AVD P+LHHL D +V P
Sbjct: 837 LDCLPEIFVQISRHSEDTYEVIEGLCILARNPSLHPGDIRVVKAVDIPDLHHLKDVVVLP 896
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIP------PSKKSCPPMECTPAEA------K 834
Q GDR + SG DLDGD Y V WD++L+P P S P E + K
Sbjct: 897 QTGDRDIASMCSGGDLDGDDYVVIWDQDLLPKDWFEEPMDYSAPKSEVLDRDVTVDDIIK 956
Query: 835 PLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
++ + L QI AH+ AD S+ G DE C+ LA L + AVD K+G V M L
Sbjct: 957 FFVSYMQNDRLPQIAPAHLAIADYSDDGVQDEKCLRLATLHSAAVDYNKSGMPVHMNRDL 1016
Query: 895 KPKKYPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDTD 950
KPKK+P FME ++ Y S KILG+LY G Y N+ S P D + +
Sbjct: 1017 KPKKWPHFMERKFAKKDSQYTSRKILGQLYDIAGGVY-LNLQPHSAKRRLPFDQRILNAN 1075
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQE 1007
E+ + + A+ K YD + ++ Q+ + +E +WS + N K + E
Sbjct: 1076 FEIDDKL--LSFAKELKAEYDADIRRIMAQHEIQSEE--EVWSTFVLSHANMSKDYKFHE 1131
Query: 1008 RLKHSYSAFRKEFRQV-FEKMNS-DFELSDNEKNVLYEQKASAWYQVTYHR-EWVKKSLD 1064
+ SA R++FR + EK DF+ A A Y+VT + E K +
Sbjct: 1132 EIGLISSALRQKFRMLCHEKAGGKDFK--------SLAPLAVAMYRVTSEQMEKAKAAHS 1183
Query: 1065 LLEQGSARSVVLLSFAWIANDYLARI 1090
G + + L+SF W+ L I
Sbjct: 1184 HCTLGEEQRMPLISFPWVLQPILGMI 1209
>gi|326481841|gb|EGE05851.1| hypothetical protein TEQG_04860 [Trichophyton equinum CBS 127.97]
Length = 1579
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 224/713 (31%), Positives = 331/713 (46%), Gaps = 144/713 (20%)
Query: 389 VRRLVITPTKAYWFLESKDV-----------ADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+R +TP+ Y+ + D ADRFLRV F DE + + S Y
Sbjct: 616 MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYE---GRINSTY---- 668
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+N + VF RVK +++G + R Y FLAF ++Q R+H A+FF+ + +
Sbjct: 669 -----NNCMDE---VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTA 720
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+ WMG F+ K +AK+AAR+G CFS+T A P T E+ +++RNGY+FSDG+G
Sbjct: 721 ANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTV--REIDEVERNGYIFSDGVG 778
Query: 557 KITPDLAMEVAQILKLD--GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK 614
+I+ LA + KL PPS +Q R G
Sbjct: 779 RISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGG--------------------------- 811
Query: 615 SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
S H LEI W++F LNRQ+I +LS L VSDEIF M + + + A
Sbjct: 812 SIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMS 871
Query: 675 VLTASCAEQGNTA--AIMLSAGFKPQTEPHLQGML----TYELGELKE-CQCFI------ 721
+L T A M+ GF+ +P ++ +L +++ LKE + FI
Sbjct: 872 MLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 931
Query: 722 --------------QVSESSLENCFSKHGSRFAET----------KKLQVINGFVVIAKN 757
+ S+E + + E KK +VI G ++A+N
Sbjct: 932 FGCLDETATLKGYHEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 991
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
P L PGD+R++ AV+ P LHHL D +VFPQ GDR + SG DLDGD Y V WD++L+P
Sbjct: 992 PSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 1051
Query: 818 -PSKKSCPPMECTPAEAKPLT-------------CHVNHQNLGQICNAHVVHADRSEYGA 863
P PM+ T + A+ LT ++ + L QI +AH+ AD E G
Sbjct: 1052 LPKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 1111
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ----TYKSNKILGR 919
DE CI LA+L + AVD K+G M L P+K+P FME ++Y+ Y+S KILG+
Sbjct: 1112 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFME-KKYKPKEAQYQSKKILGQ 1170
Query: 920 LYR---------QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSY 970
+Y +++ +DE I + D+ V S D A+ K Y
Sbjct: 1171 IYDIVERVEFRPKLEAPFDERI--------------LNCDISV--SEDMVLAAKKLKSLY 1214
Query: 971 DGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEF 1020
D + ++ Q+ + + EF +WS + N K + E L SA R F
Sbjct: 1215 DADMRRIMAQHEI-KTEF-EVWSTFVLGHANMSKDYKFHEELGQISSALRDRF 1265
>gi|396468594|ref|XP_003838211.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
gi|312214778|emb|CBX94732.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
Length = 1004
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 225/702 (32%), Positives = 345/702 (49%), Gaps = 96/702 (13%)
Query: 390 RRLVITPTKAYW---FLESKDV--------ADRFLRVTFMDEGLQTMNANVLSYYVAPIV 438
R +VITPT Y +E+ + ADRF+RV F DE N VL
Sbjct: 47 RSVVITPTMMYVASPLMETSNRITRKYAADADRFIRVKFSDEK----NEGVL-------- 94
Query: 439 KDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL 498
+++ N + VF RV ++ G + GR Y FLAF ++Q R+H A+F++ S
Sbjct: 95 RNMPGN---RAEAVFSRVHHAMTQGVVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSAD 151
Query: 499 DIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGK 557
DI+ +G+F K +AK+ AR+G CFS+T ++ + + E+ D++RNG+ F+DG+GK
Sbjct: 152 DIRISLGKFDHIKTVAKFGARIGQCFSTTR---KMRNSVILQEIDDVERNGHTFTDGVGK 208
Query: 558 ITPDLAMEVAQILKLDG--SPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS 615
++ +A A+ L L PP+ +Q R GYKGV+A P+ + +R S KF +
Sbjct: 209 LSLFIAQMAAKELGLPNPFDDPPTLFQFRLGGYKGVLALDPSIQKS-EVHVRPSQHKFVA 267
Query: 616 CHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV 675
++ LEI + F NRQII +LS L VSD +F Q +M + + +A +
Sbjct: 268 EYSGLEIIRSSALATPFFNRQIIMVLSNLGVSDHVFIRKQQNMVNDYENAMSDEQIAVQK 327
Query: 676 LTA--SCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQ-------CFIQ 722
L + T A M+ GF EP + +L ++ + LKE F+
Sbjct: 328 LRKHIDMNQTTLTMAGMVLDGFMKSQEPFVMSLLMLWRSHTIKNLKEKARIAVEDGAFVL 387
Query: 723 --VSESS-LENCFSKHGSRFAETK---------------------KLQVINGFVVIAKNP 758
V ES+ L+ SR T+ ++I G V+A+NP
Sbjct: 388 GCVDESALLKGHMDDPQSRLDATRDEKLATLPEIFMQVDDTTKPGHYKIIEGLCVLARNP 447
Query: 759 CLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
L PGD+R++ AVD P L HL + +V PQ G+R + SG DLDGD Y V WD +L+ P
Sbjct: 448 SLHPGDLRVVRAVDIPALRHLRNVVVLPQTGERDLASMCSGGDLDGDDYMVLWDSHLL-P 506
Query: 819 SKKSCPPMECTPAEA----KPLT---------CHVNHQNLGQICNAHVVHADRSEYGAFD 865
+ PPM+ TP + KP+T ++ + +LGQI +AH+ AD S G D
Sbjct: 507 KIINVPPMDFTPEKPIETEKPITSEDISDFFVTYMKNDSLGQIAHAHLAQADISADGIND 566
Query: 866 ENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME---IEEYQTYKSNKILGRLYR 922
C+ LAKL + AVD PK+G M L+PKKYP FME + + Y+S KILG LY
Sbjct: 567 PVCLELAKLHSQAVDYPKSGIPAMMDRELRPKKYPHFMEKKHLPSNKIYRSRKILGMLYD 626
Query: 923 QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYN 982
Q++ D + D ++ YD D GS+ A K +YD L L+ ++
Sbjct: 627 QVQ-LVDFQPQWENRFDKRVLEA-YDLD----GSL--LQRAEGIKVAYDEALRRLMAKHG 678
Query: 983 VNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQV 1023
+ + E ++ + + + + E + SA + ++R+V
Sbjct: 679 IQTEFEAWSVFVLAHNHESRDYKFAEEFGRTVSALKAQYREV 720
>gi|18656898|gb|AAL78034.1|AF468822_2 putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]
Length = 1484
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 257/875 (29%), Positives = 397/875 (45%), Gaps = 121/875 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + + + + G+L+++ ++ F + L + L+ + + F+ E
Sbjct: 472 LDFPVRYQLEVCISHGLLSEYGVNAQFLEKLISFETDRARMMLEGVAEANKQFFEPMEMF 531
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------FLESKDVADRF 412
D + L P P VRR VITPT Y+ + D+ DRF
Sbjct: 532 DDPR-ILHYWPNARIPPY----ATLVRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRF 586
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE K +S ++ ++ RV ++ +G + R Y
Sbjct: 587 LRVQFTDE--------------VTFGKIFSSQDSNKDDNLYTRVHRVMQNGVIIGDRHYK 632
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVE 531
FLAFS++Q R++ A+FF + + I+NWMG+F +++ K+AARMG CF++T
Sbjct: 633 FLAFSNSQFRENGAFFFCETDHVTCASIRNWMGDFRHIRSVGKFAARMGQCFTTTRQVNG 692
Query: 532 IPPTEVDHELPDIKR----NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAG 587
I ++ ++ DI+R N + F+DG+GKI+ A +A + D PS +Q+R G
Sbjct: 693 ISIPKI-RQIGDIQRRSGDNIWNFTDGVGKISVFFARMIAS--ERDLPETPSCFQMRMGG 749
Query: 588 YKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVS 647
KGVV WP + +R S +KFK+ + LEI + F LN+Q+I +L L V
Sbjct: 750 CKGVVVVWP-DIPANEVHIRPSQEKFKAVYNGLEIIKTSTFAHATLNKQVIPVLIALGVD 808
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIM-LSAGFKPQTEPHLQGM 706
D +F + + + L S A E+L + E T + + F EP L +
Sbjct: 809 DAVFVRMLDDELKEYDEALADSMKAGELLRSQVDENQTTLTMAEMVDTFMDSEEPFLWTL 868
Query: 707 LT----YELGELKE---------CQCFIQVSESSLENCFSK------------------- 734
L + L LK+ F V E+ + S+
Sbjct: 869 LRLWKCWVLKRLKQKFAISVKNSAMIFGVVDETGVLRGHSQDTEGKGFNNIESLPQIFLQ 928
Query: 735 ---HGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
GS T +VI G V+ +NP L PGDVR++EAVD PEL HL + +VFP+ GDR
Sbjct: 929 VPIEGSDGKSTTNYEVITGICVVGRNPALHPGDVRVVEAVDVPELRHLKNVVVFPKTGDR 988
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME-----CTPAEAKP----------- 835
+ SG D+DGD Y+V WDE LI PS+ PP++ TP P
Sbjct: 989 DVPSMCSGGDMDGDDYFVYWDERLI-PSEWDHPPLDHDADSSTPGLDSPADVTNGDVTRF 1047
Query: 836 LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
++ + +LG+I AH AD+ G CI LAKL + AVD K+GK M HL+
Sbjct: 1048 FAQYMKNDSLGRIATAHFAQADQLAGGVKHPKCIELAKLHSKAVDYIKSGKPAVMKRHLQ 1107
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPG 955
P+ +P +ME ++ +Y S LG++Y +IK E + E+ + I LE
Sbjct: 1108 PRNWPHWMERDKKSSYHSRGALGQIYDRIK---IEEFHAAYEMSFD-TRILSRYQLE--- 1160
Query: 956 SVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG---ELQERLKHS 1012
D A A K +YD + L GQ+ EF IWS + G +LQE +
Sbjct: 1161 -EDTLAKASEIKAAYDIAMRRLTGQHEAPVTEF-EIWSTFILTKPRVGSDYKLQENVGRE 1218
Query: 1013 YSAFRKEFRQV-FEKMNSDFEL----SDNEKNVL--YEQKASAWYQVTYH------REWV 1059
+A + FR V E + D + S + K L ++ +A Y VT++ RE
Sbjct: 1219 MAALKARFRAVCMEAVTGDEQTPTCASASSKVNLEKLDRFVAAMYTVTHNEVRAAVRERS 1278
Query: 1060 KKSLDLLEQGSARSVV--LLSFAWIANDYLARIKI 1092
K D ++G + L+SF W+ + LAR+ +
Sbjct: 1279 KPRPD--DEGDLEEIQMPLISFPWLYHRELARVAL 1311
>gi|358384867|gb|EHK22464.1| hypothetical protein TRIVIDRAFT_28428 [Trichoderma virens Gv29-8]
Length = 1158
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 264/906 (29%), Positives = 417/906 (46%), Gaps = 135/906 (14%)
Query: 290 PVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHI 349
P + PF +H GV +++ V + +LN+H +S F L AL +
Sbjct: 244 PSKFPF--VHLDFGVRYQLEVCVG----RRVLNEHTISLEFLQKL---------AALDPL 288
Query: 350 YSYKRPVF--DAYEKLKDVQECLIKNPKLNEGPKN--IDDIAEVRRLVITPTKAYW---F 402
+ +R F D E + + QE + + P R+ ITPT
Sbjct: 289 DAKRRLEFLLDNGEVMYNPQELFTWSAAASYVPNTRIPHYCVLARKAAITPTSILLSSPI 348
Query: 403 LESKD--------VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFK 454
+E+ + + DRFLRV F++E M + ++ +TS + K V+K
Sbjct: 349 VETSNRVLRYFNHIQDRFLRVQFVEE----MESGRIA---------MTSRN---KEDVWK 392
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIA 513
++ L +G + RRY FLAF S+QLR A+FF S DI+ WMGE + +A
Sbjct: 393 KILRTLYEGIQIGDRRYEFLAFGSSQLRQCGAYFFCPTDHISCDDIRRWMGEVGHIRIVA 452
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K+AAR+G CFS+T +P +V +PDI+RNGY F+DG+G I+ +A + + + LD
Sbjct: 453 KHAARLGQCFSTTREMRGLPVPDV-RRIPDIERNGYCFTDGVGMISEFMARMIIEEMTLD 511
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFL 633
P+A+Q R G KGV+ WP G + +R S +KFK+ LEI ++ L
Sbjct: 512 VYTEPTAFQFRMGGCKGVLVVWPQAKKG-EVYIRESQEKFKADVKGLEIIKCAKYSSATL 570
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--ML 691
NRQ IT+L L VS F + S + ++VA +LT E +T + +L
Sbjct: 571 NRQTITILECLGVSTPAFLAILEKQISLYEEAMKNNNVAVNILTKCVDENQSTLILAELL 630
Query: 692 SAGFKPQT--EPHLQGML----TYELGELK-------ECQCFI--------------QVS 724
+GFK T EP + +L ++ L L+ E F+ +
Sbjct: 631 QSGFKTDTVQEPFVTNLLALWRSWSLKLLRDKARIPIEKSAFVLGCVDETGILRGHSNAT 690
Query: 725 ESSLENCFSKHGSRFAETKKLQV------INGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
E +++ +K F + +V I G ++ +NP L PGD+R++EAVD PELHH
Sbjct: 691 EGTVDKDINKLPQIFLQVSDSKVYDQANAIEGVCIVGRNPSLHPGDIRVVEAVDIPELHH 750
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
L D +VFP GDRP N SG DLDGD +++ W+ LI P++ + P M + L
Sbjct: 751 LKDVVVFPSTGDRPVPNMLSGGDLDGDDFFIIWEPTLI-PTEWNHPAMNYSSPSPATLDR 809
Query: 839 HVNHQNLGQ-------------ICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
VN +L I AH+ AD G + C+ LA+L + AVD PKTG
Sbjct: 810 DVNANDLRDFFVRYMQNDVLPLIATAHLGLADSD--GPKSDICLRLAELHSQAVDYPKTG 867
Query: 886 KIVTM-PSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
+ P PK++P FM ++ YKS K LG +Y ++ ++I + + N D
Sbjct: 868 EPAEWNPGLHNPKEWPHFM--DKKVCYKSKKALGAIYNRV---IKQSIQFRPDWE-NAFD 921
Query: 945 IHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQG 1003
++ ++ DAR K YD + +L Q+ + + E W+M K +
Sbjct: 922 QRILKRFQLDNAM--LKDARIIKSQYDIAVRRILLQHKLETEFELYTSWAMSKPSVGSDY 979
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVT---------- 1053
+ QE L + A ++ FR+ + FE + ++ +A Y+VT
Sbjct: 980 KRQEELGKEFDAVKQRFRE------ACFEAAGGYDEAKIDKFVAAMYKVTEEEIKIALFE 1033
Query: 1054 YHREWVKKSLDLLEQG--SARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
+HR ++ ++ + A+S+ L+SF WI + RI A+ GK P N++
Sbjct: 1034 HHRGPTNEAGVIVPERKLEAKSMPLISFPWIFPWVMIRI-------ASAGKCNPKNSILA 1086
Query: 1112 YVADRI 1117
R+
Sbjct: 1087 AAHQRV 1092
>gi|296420862|ref|XP_002839987.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636195|emb|CAZ84178.1| unnamed protein product [Tuber melanosporum]
Length = 1542
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 244/834 (29%), Positives = 388/834 (46%), Gaps = 135/834 (16%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYE-- 361
+S+ + + + + L+++ ++ F D L P+E + L+HI + +D +
Sbjct: 575 LSYPVRYQLEVCISHNCLSEYNITCEFIDRLAALPKEAAIPLLEHIAERRIRHYDPMDIF 634
Query: 362 KLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVA-----------D 410
++ V + I N KL D +R+ +TP+ Y+ + ++ D
Sbjct: 635 TIQGVTKGTI-NLKLP------DHCQLLRKANVTPSTVYFTTPTVEITNRVVRQYSEHID 687
Query: 411 RFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKT--GVFKRVKSILSDGFNLCG 468
RFLRV F+DE Q NS +KT VF RVK+ L G +
Sbjct: 688 RFLRVQFVDEKSQGR-----------------INSTDKKTMHEVFTRVKAALDHGITIGD 730
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTH 527
R++ FLAF ++Q+R+H A+FF+ S DI+ WMG F+ + +AK+AAR+G CFS+T
Sbjct: 731 RKFEFLAFGNSQIREHGAYFFASDDHLSAADIRAWMGSFSEIRIVAKHAARLGQCFSTTR 790
Query: 528 ATVEIPPTEVDHELPD--IKRNGYVFSDGIGKITPDLAMEVAQILKL---DGSPPPSAYQ 582
A I VD + + GY FSDG+GKI+ LA + L+L D P PS +Q
Sbjct: 791 A---INGVRVDVRTTEDIVNAEGYNFSDGVGKISEFLARLITTELRLRLVDKEPVPSCFQ 847
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R G KGV+A P + + +R S KF++ H LE+ W++F LNRQ+I +L+
Sbjct: 848 FRLGGRKGVLAVSPDANHR-EVYIRPSQLKFEARHNILEVIRWSKFATAALNRQLIIVLT 906
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTE 700
+L D F M + +V VA +L + +T AI M+ AGF + E
Sbjct: 907 SLGAPDHYFEDKLQFMLKSYEVAMVDPGVAVRLLCRNVDPNESTLAIAAMIRAGFMDRRE 966
Query: 701 PHLQGML----------------------TYELGELKECQC----FIQVSESSLENCFSK 734
P + +L + LG + E + E S E+ +
Sbjct: 967 PFVMSLLKLWRAWTIKYLKEKAKIMIEEGAFVLGVVDETGTLDGYYYSQDEGSTEDADNP 1026
Query: 735 HGS------------RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDC 782
S R E++ +I G VIA+NP L PGDVR + AV+ ELHHL +
Sbjct: 1027 ETSLPQIFLQVTDPDRPGESR---IIEGPCVIARNPSLHPGDVRKVMAVNAKELHHLRNV 1083
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSC----PPMEC---TPAE--- 832
+VF QKGDR N SG DLDGD Y + WD+ L SC PM TP E
Sbjct: 1084 VVFSQKGDRDLPNMLSGGDLDGDDYIIIWDKKLT-----SCVNNYEPMNYSAQTPRELAR 1138
Query: 833 -------AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
K ++ + LG I NAH+ AD+ + G + C LA L + AVD K+G
Sbjct: 1139 DVEIGDITKFFVNYMKNDKLGTIANAHLAWADKRDEGVKSDECFRLAILHSHAVDYVKSG 1198
Query: 886 KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP-VD 944
+ MP L+ K +P FME + +TY+S+KILG LY + S++D P ++
Sbjct: 1199 EPAIMPPELRRKTFPHFMEKKPEETYRSDKILGVLYDSV-----------SKIDFVPALE 1247
Query: 945 IHYDTDLEVPGSV--DFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRK 1001
+ +D + ++ + AR K YD + ++ Q++++ + E I+ M + K
Sbjct: 1248 LEFDDRILNAYTLNEEILEVARAIKIRYDAAMRRIMAQHDIHTEFEVISIFIMHHSMATK 1307
Query: 1002 QGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYH 1055
+ E + + + F+++ +E+ ++ +++ +A Y VT+
Sbjct: 1308 DYKFHEDIASVCNGLKDTFKKII------YEVVASKDDIIMGPFIAAMYFVTHQ 1355
>gi|260801475|ref|XP_002595621.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
gi|229280868|gb|EEN51633.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
Length = 1492
Score = 299 bits (765), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 218/646 (33%), Positives = 304/646 (47%), Gaps = 97/646 (15%)
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN------GYVFSDGIGKITP 560
F + A Y ARMG CFS+T ++V + P +V + DI+ Y FSDGIGKI+
Sbjct: 586 FQVRCPATYLARMGQCFSTTESSVTVRPGQVS-RIADIEGGRDPDGKSYCFSDGIGKISR 644
Query: 561 DLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSL 620
DLA EV + K S PSA+Q+RYAG KG++A P G+ M R SM+KF S H ++
Sbjct: 645 DLAKEVCE--KTQRSHEPSAFQVRYAGVKGMLAVDPTLT-GLAMQYRKSMEKFSSEHNNI 701
Query: 621 EICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC 680
EICS + +LNRQII++LS L + DE+F +Q KL M + + A + L
Sbjct: 702 EICSESHPARFYLNRQIISILSGLGIPDEVFQVLQEDQLRKLASMFLLENRAVDALNQRA 761
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLTY------------------------------E 710
G + + G EP +GML E
Sbjct: 762 QLSGVPYQKLSNCGVYMTREPFFKGMLRRVYKSGIGDTRRKARIEIPPEYGRNMLGVLDE 821
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
G L+ Q F+Q +E + + ETK V+ G VV+++NPC PGDVR L A
Sbjct: 822 TGTLEYGQVFVQYTEDITD--------KGGETK---VLTGDVVVSRNPCFHPGDVRKLRA 870
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP 830
VD P LHH+ D +VFP KG RPH NE SG DLDGD ++VTW +L+ + P P
Sbjct: 871 VDVPALHHMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWHPDLLFQRPNADPMHFKAP 930
Query: 831 AEAKP-----------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAV 879
+ + + ++ LG I NAH+ +D+ E G F + C+ LA+ + AV
Sbjct: 931 KKIELEIVTISDLQNFIVDYIKSDILGVIANAHLAFSDKEEDGVFSQVCLNLAEKHSDAV 990
Query: 880 DSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTY-KSNKILGRLYRQIKGAYDENISVSSEV 938
D PKTG V + +PK YPDFM+ +T +S K +G +YR+ + ENI + E
Sbjct: 991 DFPKTGVPVGLSDDERPKAYPDFMDKSHKKTVRRSEKAMGEMYRECQAI--ENICSAPEK 1048
Query: 939 DINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRH---IWSMP 995
I D L +P + A + Y+ QL L+ +Y + + I +
Sbjct: 1049 TDEAETIEPDPYLILPTHQRYKRQAEQSRGRYNDQLKYLMDRYGIETEAEAMSGCIGRIH 1108
Query: 996 KY--NSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVL-------YEQKA 1046
K+ N + E++ K R+ R+ F F EKNV + KA
Sbjct: 1109 KHMDNRYDRHEVERVFKERIKDLRRRTREEF------FVEFGGEKNVKKSDYPPEVQAKA 1162
Query: 1047 SAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKI 1092
SAWY VTY A LLSF WI D LA IK+
Sbjct: 1163 SAWYVVTY--------------SDANENRLLSFPWIVGDILAVIKV 1194
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 46/308 (14%)
Query: 303 GVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREV-------IVTALKHIYSYKRP 355
GV+F+ + A++ +G Q++D+F +R R+ I+ L H+
Sbjct: 302 GVAFKTSYAFRALLSRGFTAMDQVTDAFIRQVRRLDRDRGEDVAADILYRLTHVLER--- 358
Query: 356 VFDAYEKLKDVQECLIKNPKLNEG-PKNIDDIAEV-RRLVITPTKAYWFLESKDV----- 408
D + ++ V +CL+ + G P+ + +V R+++TPT+ FL+ + +
Sbjct: 359 --DRFANIQAVLDCLLAARDVELGRPETLPATLQVVARVIVTPTRLV-FLQPEIMYGNRV 415
Query: 409 -----ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
D FLRV F DE + A + ++ +F RV+ +L G
Sbjct: 416 LREFGTDHFLRVVFRDEDFSKLQAT-----------GTGRGNGDEEEKIFVRVRKVLKKG 464
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLC 522
+ R Y FLA S++QLR+H WFF+ G I++WMG+F+ ++ A Y ARMG C
Sbjct: 465 IKVGNRLYEFLAASNSQLREHGLWFFASDGRNRADSIRDWMGDFSNSRCPATYLARMGQC 524
Query: 523 FSSTHATVEIPPTEVDHELPDIKRN------GYVFSDGIGKITPDLAMEVAQILKLDGSP 576
FS+T ++V + P +V + DI+ Y FSDGIGKI+ DLA EV + K S
Sbjct: 525 FSTTESSVTVRPGQVS-RIADIEGGRDPDGKSYCFSDGIGKISRDLAKEVCE--KTQRSH 581
Query: 577 PPSAYQIR 584
PSA+Q+R
Sbjct: 582 EPSAFQVR 589
>gi|361125379|gb|EHK97425.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 1213
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 233/749 (31%), Positives = 352/749 (46%), Gaps = 109/749 (14%)
Query: 411 RFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
RFLRV F DE + I S + +F RV L++G + R
Sbjct: 282 RFLRVQFTDESFEG---------------KINSCVKQRNDEIFTRVYRTLANGIRIGDRH 326
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI-AKYAARMGLCFSSTHAT 529
Y FLAF ++Q R++ A+FF + + DI++WMG FT N+ AKYAAR+G CFS+T A
Sbjct: 327 YKFLAFGNSQFRENGAYFFCEDEHLTCNDIRDWMGNFTHINVPAKYAARLGQCFSTTRAI 386
Query: 530 VEI-PPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGY 588
+ PT V +PDI+ Y +SDG+GKI+P LA + L L + PSA+Q R G
Sbjct: 387 NGLSAPTIV--TIPDIEHGKYTYSDGVGKISPFLAQMITAELGLHVAHEPSAFQFRLGGC 444
Query: 589 KGVVACWP-AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVS 647
KG++ WP AKD + +R S +KF + + LEI +++ LNRQ ITLLS L V
Sbjct: 445 KGILVTWPDAKDREVH--IRKSQQKFTAVYNGLEIIRCSQYSCATLNRQTITLLSNLGVG 502
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQG 705
D +F + S + ++A E+L + T I M+S+ K +P +
Sbjct: 503 DGVFLKMMKEQLSGYQNAMENDNLAIELLCRFIDDNRMTINIAKMISSDIK---DPFVSS 559
Query: 706 ML----TYELGELKECQCFIQVSESSLENCF------------SKHGSRFAETKKLQ--- 746
+L ++ + LKE + + + C S G E + Q
Sbjct: 560 LLHLWRSWSIKLLKEKAKIVVEKGAFVFGCVDETHTLRGYKAPSTEGDAIPEEQLPQIFI 619
Query: 747 ---------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
VI G ++ +NP L PGD+RI +A+D P LHHL D +VFP GDR
Sbjct: 620 QVPVHGCDPKNPVYNVIEGICLVGRNPSLHPGDLRICQAIDVPALHHLRDVVVFPSCGDR 679
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIP------PSKKSCPPMEC--TPAEAKPLTCH---- 839
+ SG DLDGD Y+V WD++L P P PP + P K L H
Sbjct: 680 DVPSMCSGGDLDGDDYFVIWDKDLQPHEWNCSPMDYDAPPAKSQRNPVAVKDLMQHFVRY 739
Query: 840 VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY 899
+ + +L QI +AH+ AD+ GA + CI LA L + AVD K+G MP L+P+++
Sbjct: 740 MKNDSLPQIAHAHLAQADQLPGGAKNPKCIQLAHLHSKAVDYVKSGHAAEMPKDLQPRRW 799
Query: 900 PDFMEIEEY---QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGS 956
P FME Q Y+S ILG+LY Q+ E I+ + + P D T + +
Sbjct: 800 PHFMEKRHKRKDQLYESTTILGQLYNQV-----ERINFLPQWKV-PFDRRILTAYKFEDA 853
Query: 957 VDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSM-----PKYNS-----RKQGELQ 1006
AR K YD + ++ Q + + EF +WS P+ S + G +
Sbjct: 854 A--LKKARQLKSKYDVHMRRIMAQQEI-KTEFE-VWSTFVLSKPRVGSDYKLGEEMGRIS 909
Query: 1007 ERLKHSYSAF-----RKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKK 1061
E LK + A KEF + + ++++ E + + AS ++ R+ +
Sbjct: 910 EGLKEQFRALVIEYAGKEFSTLGPFVAGMYKVTKEELDCALAECAST--KLVGGRDVPAR 967
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARI 1090
++ + ++ L+SF W+ + L RI
Sbjct: 968 KME------SETMPLISFPWLFENVLTRI 990
>gi|449301850|gb|EMC97859.1| hypothetical protein BAUCODRAFT_67567, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1035
Score = 298 bits (764), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 240/813 (29%), Positives = 369/813 (45%), Gaps = 119/813 (14%)
Query: 302 EGVSFEIMFLVNAVMHKGILNQHQLSDSFF----DLLRCQPREVIVTALKHIYSYKRPVF 357
E ++F++ + A + +GI ++ + F DL + +++ AL + P+
Sbjct: 205 EILTFDVRYQFEACLSQGIFHECNIRTEFLKKLADLEPARATKLLEKALDGRRRFFEPI- 263
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTK---AYWFLESKD------- 407
D + L +V K P A++R VITPT + +E+ +
Sbjct: 264 DVFRLLNEVSTIEKKRPSY---------CAKIRAAVITPTSLIISTPVVETTNRIIRKYE 314
Query: 408 -VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
+ D FLRV F DE + + +NS + + +F RVK L +G +
Sbjct: 315 HIVDHFLRVKFTDERYK---------------GKVMNNSDNNQDEIFTRVKRTLQNGIQI 359
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
GR Y FLAF ++Q R++ A+FF+ + S DI+ MG FT +AKYA+R+G CFS+
Sbjct: 360 AGRHYDFLAFGNSQFRENGAYFFASTPDLSAADIRVAMGTFTHITTVAKYASRLGQCFST 419
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS--PPPSAYQI 583
T VD L DI RNGY F+DG+GK++P +A VAQ + PS Q
Sbjct: 420 TRGLSY--RVRVD-ALADITRNGYTFTDGVGKVSPFIAQMVAQTFGFPNAFVDYPSVIQF 476
Query: 584 RYAGYKGVVACWP--AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
R GYKGV+A P D + + R S KF + + LEIC ++F +LN+QII +L
Sbjct: 477 RLGGYKGVLAVDPTLTGKDNMVIQTRPSQMKFPAVYHGLEICRLSQFTAAYLNQQIILVL 536
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQT 699
S V D++F L ++ D A + L T + M+ GF
Sbjct: 537 SARGVEDKVFVVKVQQALKDLQDAMIDEDKAKDQLCKKIDYNHTTLVLAQMIDDGFMAVR 596
Query: 700 EPHLQGML----TYELGELKECQCFIQVSE-----------SSLENCFSKHGSRFAETKK 744
+P + + ++ + LKE + I V E ++L F+ T
Sbjct: 597 DPFMMSCMRLWRSWMVKYLKE-KARIFVDEGAFVLGCTDETTTLRGDFNADNHTVDLTDA 655
Query: 745 -------LQV-----------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
LQ+ + G ++A+NP L PGD+R++ A+D P LHHL +C+V P
Sbjct: 656 TPLPEIFLQIPDVAKKGSYVAVKGVCLLARNPSLHPGDIRVVRAIDVPALHHLKNCVVLP 715
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAK---PLTC----- 838
Q GDR N SG DLDGD + V WD+ LIPP P P K P+T
Sbjct: 716 QTGDRDLANMCSGGDLDGDDFLVIWDKQLIPPEWYHSPMDYQAPEPVKAELPITVDAITS 775
Query: 839 ----HVNHQNLGQICNAHVVHADRS-EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
++ H N+G I AH AD G D C+ LA+L + AVD KTG MP+
Sbjct: 776 FFVTYMKHNNVGIIACAHRYTADDGFSEGVKDFKCLQLAQLHSMAVDYMKTGVPAVMPNE 835
Query: 894 LKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDLE 952
L+ +KYP + E +Y S ++LG+LY ++ +D+ P D+ +D +
Sbjct: 836 LRVRKYPHWAERPGKSSYHSRRVLGQLYDAVQ-----------RIDLQPAWDLPFDERIL 884
Query: 953 VPGSVD--FTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGE----LQ 1006
+D A K YD + ++ QY V EF IW+ S Q E
Sbjct: 885 SAYQLDAVLLQAASEVKVRYDEAVQRIMAQYGVE-NEF-EIWTT-FVRSHNQDENDYKFT 941
Query: 1007 ERLKHSYSAFRKEFRQV-FEKMNSDFELSDNEK 1038
E+L + + ++ +++ +EK + + D K
Sbjct: 942 EKLGETVTTLKQYYQETCYEKAGTSAQERDWTK 974
>gi|378728086|gb|EHY54545.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1461
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 255/891 (28%), Positives = 397/891 (44%), Gaps = 128/891 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F++ + + + +G LN++ + F L PR+ L H+ SY+ ++D
Sbjct: 378 LDFDLRYQLEVCISQGWLNEYTIDKEFLQRLTSLPRQRAKQMLIHVDSYQERIYDPMTIF 437
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVA-----------DRF 412
KD++ K + P N + E+ +T + + S ++ DRF
Sbjct: 438 KDLRYS--KPVRARALPTNCN---EIYHATVTASGVLFHTPSVEITNRIIRKYERYNDRF 492
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F D+ SY + T+ +F+RV+ L G + R Y
Sbjct: 493 LRVRFEDD----------SYRGKSRLYPATNGRMRL---LFERVRRTLKHGIIIADRHYE 539
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVE 531
FLA+ ++QLR+H A+FF+ + + I+ MG F + K +AK AARMG CFS+T A V
Sbjct: 540 FLAWGNSQLREHGAYFFASTHDITPDTIRRSMGIFDSEKVVAKRAARMGQCFSTTRA-VS 598
Query: 532 IPPTEVDHE--LPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYK 589
+ H+ + D+ NG+ F+DG+GKI+ A V LKL G PSAYQ R G K
Sbjct: 599 VLSKRAFHKRLIDDVIINGHTFTDGVGKISMLGAQLVCSSLKLRGK-VPSAYQFRLGGCK 657
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
GV+A P G+ + +R S KF+S LEI + F FLNRQ+I +LS L V DE
Sbjct: 658 GVLALDPLL-PGVDIKIRPSQYKFQSESDELEIIRVSEFWQPFLNRQLILVLSDLGVPDE 716
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTE------- 700
+F Q L+ +V A L + T +I M+ GF+ E
Sbjct: 717 VFLQKQEDCIKALDRAMVDDTAALRALRDNVDPNLTTLSIAAMIEDGFRQSNEIFVTSLL 776
Query: 701 -----------------PHLQGMLTY----ELGELKECQCFIQVSE-----SSLENCFSK 734
P QG E +L+ + F+ L F +
Sbjct: 777 RLYRAWTLKYLKEKAKIPVPQGAFVLGVVDETNKLRGHEPFVSPGSEPPTLQDLPQIFMQ 836
Query: 735 HGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT 794
+ + T + +++ G +IA+NP L GD+R++ AVD P LHHLCD +V P +G+R
Sbjct: 837 YTDQ--HTGQRRIVEGVCIIARNPSLHRGDIRVVHAVDIPALHHLCDVVVMPIQGERDLP 894
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSK------------KSCPPMECTPAEAKPLTC-HVN 841
+ SG DLDGD Y V WD +LIPP + K E T + C ++
Sbjct: 895 SMCSGGDLDGDDYVVIWDPDLIPPQEEWFVEPFSYAAPKPVGKDEITTDDIINFFCDYMQ 954
Query: 842 HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPD 901
+ LG+I +AH+ AD + G + C+ L L + AVD PKTG MP L+ K+P
Sbjct: 955 NDFLGRIAHAHLAAADYLDEGIRSDVCLSLVNLHSKAVDYPKTGVPAEMPRELERNKWPH 1014
Query: 902 FMEIEEYQTYKSNKILGRLYRQI-KGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFT 960
FME YKS+KILG+LY + + A++ N S + I + ++ +E
Sbjct: 1015 FMEKRRAPQYKSHKILGQLYDAVERVAFEPNWEGSFDQRILKHQLPPESVVE-------- 1066
Query: 961 ADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFR 1017
+ R K SYD + ++ Q+ +N EF +WS + + + + E + +
Sbjct: 1067 -EVRRLKKSYDEGMRRIMAQHQIN-TEF-EVWSTFVLHHSKAARDFKFHEEIGQHARTLK 1123
Query: 1018 KEFRQVF--EKMNSDFELSDNEKNVLYEQKASAWYQVTYH-----REWVKKSL--DLLEQ 1068
+++ V DFE A A Y +TY +E V S+ ++
Sbjct: 1124 EQYYDVLVEHAGGRDFE--------KLMPMAVAAYHITYDEFRQAQEAVDGSVIDEVFSD 1175
Query: 1069 GS-----------ARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNN 1108
+ A+ + +SF W+ D L RI + G+ K +N
Sbjct: 1176 AAGSRASSAGGPQAKEMPFISFPWVLQDILGRIARNTVLESESGRDKAASN 1226
>gi|255944161|ref|XP_002562848.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587583|emb|CAP85624.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1368
Score = 297 bits (760), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 251/812 (30%), Positives = 371/812 (45%), Gaps = 122/812 (15%)
Query: 389 VRRLVITPTKAYWFLESKDVADR-------------FLRVTFMDEGLQTMNANVLSYYVA 435
+R ITPT Y+ + D+++R FLRV F DE +
Sbjct: 466 MRTARITPTTIYYNTPTVDISNRVVREWSTKGTPGRFLRVRFTDEKTEGR---------- 515
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET 495
I ++ V+ RVK L++G + R Y FLAF ++Q R+H A+F +
Sbjct: 516 -----INASQRGCNDEVYTRVKRTLANGIAIGDRHYEFLAFGNSQFREHGAYFVAPDAGI 570
Query: 496 SVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHA----TVEIPPTEVDHELPDIKRNGYV 550
S I+ WMG+F +N+AKY AR+G CFS+T A +V+ P + DI RNG+
Sbjct: 571 SAGTIRAWMGQFNHIRNVAKYTARLGQCFSTTRAFTGSSVQTIPCD------DIIRNGFT 624
Query: 551 FSDGIGKITPDLAMEVAQ---ILKLDGSPPPSAYQIRYAGYKG--VVACWPAKDDGIRMS 605
FSDG+GKI+ LA V I L G PPSA+Q R G KG VV+ P + +
Sbjct: 625 FSDGVGKISKFLAQMVTSQHDIKTLTGE-PPSAFQFRLGGAKGMLVVSTDPLPQE---VH 680
Query: 606 LRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM 665
+R S +KF++ LEI W+++ LNRQII +LS L + DE+F + +M +
Sbjct: 681 IRPSQQKFETSQAGLEIIRWSQYSLATLNRQIILVLSALGIPDEVFHSKLNTMLGSFHRA 740
Query: 666 LVASDVAFEVLTASC--AEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELKECQC 719
++ A +L + T A M+S GF+ EP + ML ++ L LKE +
Sbjct: 741 MLNDSKAINLLQKYIDPNQMTLTLAQMVSDGFRRNEEPFVNTMLELWKSWHLKHLKE-KA 799
Query: 720 FIQVSESS-----------LENCFSKH--GSRFAETKKL-------------------QV 747
I + + + L+ F K R + +KL +V
Sbjct: 800 KIAIDQGANVLGVMDETGVLKGYFRKELPSRRASYAEKLAALPEIFVQVCRLDGGGEYEV 859
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
I G ++A+NP L PGD+R++ AV+R ELH L D +V PQ GD+ + SG DLDGD Y
Sbjct: 860 IEGLCILARNPSLHPGDIRVVRAVNRSELHALRDVVVLPQTGDQDIASMCSGGDLDGDDY 919
Query: 808 YVTWDENLIPPS--------KKSCPP---MECTPAEAKP-LTCHVNHQNLGQICNAHVVH 855
V WD NLIP + K S P + T E ++ + L +I +AH+
Sbjct: 920 LVIWDPNLIPANWFVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAW 979
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME---IEEYQTYK 912
ADR G +++ CI LA+L + AVD K+G M L PK +P FME YK
Sbjct: 980 ADRLPRGVWEDKCIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYK 1039
Query: 913 SNKILGRLYRQIKGAYDENISVSSEVDI-NPVDIHYDTDLEVPGSVDFTADARNQKCSYD 971
S KILG+L YD I+ + P D P S + AR K +D
Sbjct: 1040 STKILGQL-------YDAVITPDFVPKLEKPFDSRILESPLAPASEAYMEYARELKAEFD 1092
Query: 972 GQLNGLLGQYNVNRKEFRHIWSMPKYNSR---KQGELQERLKHSYSAFRKEFR-QVFEKM 1027
+ ++ QY +N EF +WS K ++QE L R+ FR Q ++K+
Sbjct: 1093 MNMRQIMAQYEIN-TEF-EVWSTFVLRHGFVIKDYKMQEDLGRIVGTLRRGFRHQCYDKV 1150
Query: 1028 NSDF----ELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIA 1083
D L V EQ A+A + + ++ + + E S + L+SF WI
Sbjct: 1151 GRDGGNIPALVIAMYRVTQEQVAAA-LEARRNEALQREDVSIAEVNST-ELPLISFPWIF 1208
Query: 1084 NDYLARIKIKCQEMANIGKSKPVNNLARYVAD 1115
D L + A I + + A+ + +
Sbjct: 1209 PDVLGDVATGRARQAMISDGQESADSAKPIGE 1240
>gi|336264581|ref|XP_003347067.1| hypothetical protein SMAC_05269 [Sordaria macrospora k-hell]
gi|380093080|emb|CCC09317.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1703
Score = 295 bits (756), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 258/873 (29%), Positives = 396/873 (45%), Gaps = 134/873 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLL-----------RCQPREVIVTALKHIYSY 352
+ F++ + + + +GI+N+H + F + L + + R ++ A Y+
Sbjct: 444 LPFDVRYQLEVCISQGIINEHNIDRPFLEKLTEFCNDDNSLNKDRARLILEYAADE-YAG 502
Query: 353 KRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW---FLESKD-- 407
KR +FD KD + P P + A VRR+ ITPT+ Y+ ++E +
Sbjct: 503 KR-IFDPMGLFKD-SAAMRYFPSTFIIP---NYCALVRRVTITPTRIYFSTPYVEPTNRV 557
Query: 408 ------VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
D F+R+ F DE L+ S + +F R +L
Sbjct: 558 IRQWRFAQDYFIRIQFTDEVLEG-----------------RIRSGEAELPLFLRAYRVLQ 600
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMG 520
+G + + FLAF ++Q+R+ A+ F + + + +++WMG F+ K IAKYAAR+G
Sbjct: 601 EGIAMGLWHWKFLAFGNSQIREAGAYMFCEQSDLTCDMMRSWMGRFSHIKVIAKYAARLG 660
Query: 521 LCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSA 580
CFS+T IP + +PD++++G+ F+DG+GKI+P LA + LD P SA
Sbjct: 661 QCFSTTRLVPGIPAPRI-VTIPDVEKDGFCFTDGVGKISPLLAKIITHEWSLDRLP--SA 717
Query: 581 YQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITL 640
+Q R G KGV+ WP G+ + +R S +KF + LE+ + F LNRQ I +
Sbjct: 718 FQFRMGGCKGVLVTWP-DVKGMEVHIRKSQEKFVAEFNGLEVIKCSAFATATLNRQTIAV 776
Query: 641 LSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQ 698
LS+L V D++F + S N +V A E L E T I MLS GF
Sbjct: 777 LSSLGVPDQVFVDMMEKQLSDYNAAMVDKRKATEYLRKYVDENHITPIIAQMLSYGFMES 836
Query: 699 TEPHLQGML----TYELGELKECQCFIQVSESSL-------ENCFSKH-----GSRFAET 742
EP ++ +L ++ + LKE + + V +S+ H G + +
Sbjct: 837 QEPFVRTLLQLWRSWSIKTLKE-KARLSVEKSAFVLGCVDESRTLKGHMKVIEGWKDVPS 895
Query: 743 KKL---------------QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
+KL +VI G V+ +NP L PGD+R++EAVD P L H+ D +VFP
Sbjct: 896 EKLPQIFLQIPDNVNDGYKVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHIRDVVVFPL 955
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT---------- 837
GDR + SG DLDGD ++V WD L+ P+++S PPM P K L
Sbjct: 956 TGDRDVPSMCSGGDLDGDDFFVIWDPLLV-PNERSHPPMINEPVVGKELANEPTVNNLVT 1014
Query: 838 ---CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
++ H NL I +AH+ AD G C+ LA L + AVD KTG P L
Sbjct: 1015 FFVLYMKHNNLPLIAHAHMATADAEMDGVKSSKCLELAILHSMAVDYVKTGVPAVFPKRL 1074
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVP 954
PK +P FME ++ + Y S LG+LY +K E + ++ P D +
Sbjct: 1075 DPKSWPHFME-KKKRDYHSATALGKLYDMVK---RETFDMKENYEL-PFDSRILKHTKCR 1129
Query: 955 GSVDFT-ADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLK 1010
D T AR K YD + ++ Q + EF +W+ M K + +LQE +
Sbjct: 1130 ALRDETLTKARRIKSQYDTAMRRVMCQLEIA-TEF-EVWTAFVMSKPRVGSEYKLQENVG 1187
Query: 1011 HSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGS 1070
SA ++ FR K LS SA Y+VTY E V+ +L +Q
Sbjct: 1188 RESSALKQHFRDQCRKEAGGDLLS----------FVSAMYRVTY--EEVRIALHEAKQPH 1235
Query: 1071 AR-------------SVVLLSFAWIANDYLARI 1090
R ++ L+SF W+ D L +
Sbjct: 1236 IRPDGSLGTRRITPKTMPLVSFPWLFWDKLGEL 1268
>gi|320586448|gb|EFW99118.1| RNA-directed RNA polymerase [Grosmannia clavigera kw1407]
Length = 2177
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 251/920 (27%), Positives = 399/920 (43%), Gaps = 154/920 (16%)
Query: 299 HYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFD 358
H +SFE+ + + + +GIL +H L F + L + L+++ + ++
Sbjct: 1011 HLSRQLSFEVSYQLEVCISRGILQEHSLDVVFLESLAALSPDRACRVLEYVAERDKRIYQ 1070
Query: 359 AYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW---FLES--------KD 407
+ +D + E + D +R+ ++TPT + LE+ ++
Sbjct: 1071 PHNIFRDPKAASYWRKTPPEATLDKDRAVYIRKAIVTPTTIVFSTPALEAGNRVLRHYRE 1130
Query: 408 VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
DRFLRV F DE ++ LS ++ F R L +G +
Sbjct: 1131 HHDRFLRVQFTDE----LHIGRLS----------GGPDTTRTDECFTRAFRALKNGIRVG 1176
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSST 526
GR + FLAF ++QLR++ A+FF+ + D+++WMG+F+ K +AKYAAR+G C S+T
Sbjct: 1177 GRHFKFLAFGNSQLRENGAYFFAPTELVTCQDVRDWMGDFSNIKTVAKYAARLGQCLSTT 1236
Query: 527 HATVEIP-PTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRY 585
PT V H +PD++ G+ F+DG+GKI+ A +A L++ S PSA+Q R
Sbjct: 1237 RPVPTFGVPTTVQH-IPDVEGGGFCFTDGVGKISKWWARVIASHLRV--SEVPSAFQFRM 1293
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS--LEICSWTRFQPGFLNRQIITLLST 643
G KGV+ WP G + +R S +KF + + LEI + LN+Q I LL+
Sbjct: 1294 GGCKGVLVVWPDVPSGQVVQVRPSQEKFPTSDKANVLEIVRCSETATATLNQQTILLLTC 1353
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEP 701
L + +F + + ++ ++ + A + L + T A+ M+ AGF EP
Sbjct: 1354 LGIPTSVFLELLNEELTGIDAVMKDARKAVDQLMVRVDQNHTTHALADMVKAGFMDSDEP 1413
Query: 702 HLQGML----TYELGELKE--------------C-------------------------- 717
+ +L ++ L LKE C
Sbjct: 1414 FVWALLQLWRSWTLKALKEKARITVERSAFVLGCVDETDTLRGHTNEPERPTNEDTRDKI 1473
Query: 718 -----------QCFIQVSESSLENCFSKHGS--RFAETKKLQVINGFVVIAKNPCLRPGD 764
Q F+QV + S + A K +VI G ++ +NP L PGD
Sbjct: 1474 DDKENKIARLPQIFLQVPDLDAVTAGQVRSSIDQDAGHGKYKVIVGLCLVGRNPSLHPGD 1533
Query: 765 VRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+R++EAVD P LHHL D +VFP+ GDR SG DLDGD Y+V WD+ L+PP +
Sbjct: 1534 LRVVEAVDVPALHHLRDVVVFPRVGDRDIPGMCSGGDLDGDDYFVFWDKRLLPPHRVWNY 1593
Query: 825 PMECTPAEAKP-------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILL 871
A +P H+ H L +I +H AD+ + GA C+ L
Sbjct: 1594 EAMNYEASREPDVDRVTLRHLISFFVQHMKHDTLPRIALSHRGFADQLDGGAMHPRCLEL 1653
Query: 872 AKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK-----G 926
A+L + AVD KTG +P L PK++P +M + TY+S LG++Y ++K
Sbjct: 1654 AQLHSQAVDYAKTGIPALLPHRLNPKQWPHWMNRIQKHTYRSPTALGKIYDRVKVDSFEP 1713
Query: 927 AYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK 986
AYD+ V +H+ DL+ +D AR K YD L + Q +
Sbjct: 1714 AYDKPFDVRI--------LHHYPDLD----IDLLRRARRIKTQYDLALRRAMAQKEIG-S 1760
Query: 987 EFRHIWSMPKYNSRKQG---ELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYE 1043
EF +W+ + + G + E + + FR++ + E D
Sbjct: 1761 EF-EMWTGFSIHRPRVGSDYKASEDIGRIFKVIMSRFRRLCVR-----EAGDERDITRLG 1814
Query: 1044 QKASAWYQVTYHREWVKKSLDLLEQG--------------------SARSVVLLSFAWIA 1083
+A Y+VT +E V+ +L EQ S +S L+SF W+
Sbjct: 1815 PFIAAMYKVT--QEEVRIALHEFEQSRIRARSRGLHSPGQLLRTRLSQKSAPLISFPWLF 1872
Query: 1084 NDYLARIKIKCQEMANIGKS 1103
LA I K EM G++
Sbjct: 1873 PHELASIS-KAFEMTQDGQA 1891
>gi|425783248|gb|EKV21105.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
Pd1]
Length = 1347
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 237/816 (29%), Positives = 372/816 (45%), Gaps = 140/816 (17%)
Query: 394 ITPTKAYWFLESKDVADR-------------FLRVTFMDEGLQTMNANVLSYYVAPIVKD 440
+TPT Y+ + D+++R FLRV F DE +
Sbjct: 466 VTPTTIYYNTPTVDISNRVVREWSTKSAPGRFLRVRFTDERTEGR--------------- 510
Query: 441 ITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDI 500
I ++ ++ RVK L++G ++ R Y FLAF ++Q R+H A+FF+ S I
Sbjct: 511 INASLGDSNDEIYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATI 570
Query: 501 KNWMGEFT-AKNIAKYAARMGLCFSSTHA----TVEIPPTEVDHELPDIKRNGYVFSDGI 555
+ WMG+F +N+AKYAAR+G CFS+T A +V++ D+ RNG+ FSDG+
Sbjct: 571 RAWMGQFNHIRNVAKYAARLGQCFSTTRAFTGSSVQVATCN------DVVRNGFTFSDGV 624
Query: 556 GKITPDLAMEVA---QILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI--RMSLRGSM 610
GK++ LA V I L G PSA+Q R G KG++ P D + + +R S
Sbjct: 625 GKVSKFLAQMVTSQHNIKTLTGE-SPSAFQFRLGGAKGMLVVSP---DPMPQEVHIRPSQ 680
Query: 611 KKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD 670
+KF++ LEI W+++ LNRQ+I +LS L + D++F + SM + ++
Sbjct: 681 QKFETTQAGLEIIRWSQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDS 740
Query: 671 VAFEVLTASCAEQGNT--AAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVS 724
A +L T A M+S GF+ EP ML ++ L LKE + I +
Sbjct: 741 KAINLLQKYIDPNQTTLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKE-KAKIAID 799
Query: 725 ESS---------------LENCFSKHGSRFAE-----------------TKKLQVINGFV 752
+ + +N + G+ +A+ + +VI G
Sbjct: 800 QGANLLGVMDETGVLKGYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLC 859
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++A+NP L PGD+R++ AV+RPEL L D +V PQ GD+ + SG DLDGD Y + WD
Sbjct: 860 ILARNPSLHPGDIRVVRAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWD 919
Query: 813 ENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRS 859
+LI P++ M+ ++A L ++ + L +I +AH+ ADR
Sbjct: 920 PDLI-PTRWFVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRL 978
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME---IEEYQTYKSNKI 916
G ++E CI LA+L + AVD K+G M L PK +P FME YKS KI
Sbjct: 979 PRGVWEEKCIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKI 1038
Query: 917 LGRLYR---------QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQK 967
LG+LY ++ +D I S + I Y AR K
Sbjct: 1039 LGQLYDAVVTPNFVPKLGKPFDSRILESPLASASETYIEY---------------ARELK 1083
Query: 968 CSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSR---KQGELQERLKHSYSAFRKEFR-QV 1023
+D + ++ QY +N EF +WS + ++QE L R+ FR Q
Sbjct: 1084 AEFDMNMRQIMAQYEIN-TEF-EVWSTFVLRHGFVIRDYKMQEDLGRIVGTLRRGFRHQC 1141
Query: 1024 FEKMNSD----FELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSF 1079
++K+ L V EQ A+A + ++ L ++E S+ + L+SF
Sbjct: 1142 YDKVGRHGGNISALVIAMYRVTQEQVAAA-LEAQRKEALQREDLSVVEV-SSTELPLISF 1199
Query: 1080 AWIANDYLARIKIKCQEMANIGKSKPVNNLARYVAD 1115
WI D L + A + + + V++ A+ + D
Sbjct: 1200 PWIFPDVLGDVATGRAREALVSEGQGVDDSAKSIGD 1235
>gi|156361828|ref|XP_001625486.1| predicted protein [Nematostella vectensis]
gi|156212322|gb|EDO33386.1| predicted protein [Nematostella vectensis]
Length = 531
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 193/536 (36%), Positives = 281/536 (52%), Gaps = 58/536 (10%)
Query: 500 IKNWMGEFTA-KNIAKYAARMGLCFSSTHATVE-----------IPPTEVDHE---LP-- 542
I++ +G+ + +A + +RMG CFSST +VE IP E ++ P
Sbjct: 1 IRSKLGDLEEIRCVAVFVSRMGQCFSSTKKSVEVSLDNGVRIEKIPDVEKEYNNVLFPCC 60
Query: 543 -DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP-PSAYQIRYAGYKGVVACWPAKDD 600
+++ Y+FSDGIGKI+ DLA +VA+ L L+ PSAYQIRYAG KG++A P+
Sbjct: 61 GNVRSGVYIFSDGIGKISKDLANKVAKSLGLEAVEMFPSAYQIRYAGCKGMLAVDPSLR- 119
Query: 601 GIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
G + R SMKKF+S H +LEIC +R + NRQ ITLLS L V D+ F +Q M
Sbjct: 120 GEVLQYRDSMKKFQSSHKALEICEPSRPSELYFNRQCITLLSGLGVPDDEFIRLQDKMLM 179
Query: 661 KLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY----ELGELKE 716
L ML+ A E L G +++ +G EP + ML LG+L
Sbjct: 180 DLASMLLYETSALESLGRISIAGGLKVSLIRHSGIVVTCEPFFRSMLLAIYRSRLGDLLR 239
Query: 717 CQCFIQVSESS---LENCFSKHGS-RFAET------------KKLQVINGFVVIAKNPCL 760
+ I + ES L + GS + E + ++ G VV++KNPC
Sbjct: 240 -RARIAIPESHGRLLMGVLDETGSLDYGEVFIRYTTELGNPGQGYTILTGDVVVSKNPCF 298
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
PGD+R AVD P L+HL DC+VFP KG RPHT+E SGSDLDGD Y+ TW +I P +
Sbjct: 299 HPGDMRKFNAVDIPALYHLVDCIVFPAKGPRPHTDEMSGSDLDGDKYFATWLRGII-PDR 357
Query: 821 KSCPPMECTPAEAKPLTC-------------HVNHQNLGQICNAHVVHADRSEYGAFDEN 867
+ PPM+ P + K L ++ + LG I NAH+VHAD + G F +
Sbjct: 358 DNEPPMDFYPPKKKMLNRPIEVSDMIQFVADYIKNDQLGVIANAHLVHADSEQDGIFSDK 417
Query: 868 CILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGA 927
CI LA + + AVD PKTG+ + L+P++YPDFM + Y S+ +LG+L+++
Sbjct: 418 CIKLAHMHSDAVDFPKTGECPELTKELRPEQYPDFMMKPDKPRYVSHNVLGKLFQKCNSL 477
Query: 928 YDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV 983
++ + + DI D D+ + G + DA Q+ Y+ +L L+ +Y +
Sbjct: 478 ERARRFMTGD---STKDITVDQDMILEGHQSYLEDAIEQRDRYNAKLEALMARYGL 530
>gi|440633273|gb|ELR03192.1| hypothetical protein GMDG_01175 [Geomyces destructans 20631-21]
Length = 1568
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 260/907 (28%), Positives = 406/907 (44%), Gaps = 143/907 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRC---QPREVIVTALKHIYSYKRPVFDAY 360
+ FE+ + + + + IL H ++ F L +E L++I + ++D
Sbjct: 419 LPFEVRYQLEVCISRNILEVHNITPEFVKELASLVDTDKERATCILEYISEQGKRIYDVM 478
Query: 361 EKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVA----------- 409
KD + L +PK K A R+ +TPT Y+ + + +
Sbjct: 479 SIFKD-PDALAHSPK----SKIPTYCAYTRKATVTPTTIYFSSPTVETSNRVIRKFSAHG 533
Query: 410 DRFLRVTFMDEGLQ-TMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
DRFLRV F DE + +NA D N +F RV L +G +
Sbjct: 534 DRFLRVQFTDELFEGRINA----------CADKIRND-----QLFTRVYRTLKNGIRIGD 578
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKN-IAKYAARMGLCFSSTH 527
R + FLAF ++Q R++ A+FF S + I++WMG+F N +AKYAAR+GLCFS+T
Sbjct: 579 RHFEFLAFGNSQFRENGAYFFCPTDGLSCVQIRDWMGKFHHINVVAKYAARLGLCFSTTR 638
Query: 528 ATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAG 587
A T + EL +++RNGY F+DG+GKI+P L +A L L PS Q R G
Sbjct: 639 AIRNTGMTVL--ELQEVERNGYNFTDGVGKISPFLMKMIATELHLLHE--PSVVQFRMGG 694
Query: 588 YKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVS 647
KG++A P G + +R S KF + + LEI + LNRQ IT+LS L V
Sbjct: 695 CKGILAISPDA-KGQEIHIRKSQTKFTAEYMGLEIIRTSSHSVATLNRQTITILSALGVE 753
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQG 705
D +F + S + D A E+L + T I M+ GF EP +
Sbjct: 754 DHVFNRMLDEQLSNYMDAMNDPDKALELLGRYVDDNHMTMMIASMVLDGFMRTKEPFVLS 813
Query: 706 ML----TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKK----------------- 744
+L ++ + LKE I + + C + + +K
Sbjct: 814 LLHLWRSWSIKLLKEKAKIIVEKGAFVLGCTDETQTLRGHSKTTNAGKGTITAEDIDKLP 873
Query: 745 ---LQV-----------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD 790
LQV I G ++ +NP L PGD+R+++AVD P LHHL D +VF Q GD
Sbjct: 874 QIYLQVTDRKDPRHNVIIEGLCLVGRNPSLHPGDIRVVQAVDVPALHHLRDVVVFSQLGD 933
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT---------PAEAKPLTC--- 838
R SG DLDGD ++V WD++L+ P + + PM+ T P E +
Sbjct: 934 RDVPGMCSGGDLDGDDFFVIWDQDLL-PREWNAEPMDYTAPPPVKLDRPVEINDVMSFFV 992
Query: 839 -HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
++ L I +AH+ +D+ ++ D C+ LA L + AVD K+G MP +L+P+
Sbjct: 993 KYMKSDTLPTIAHAHLALSDQLDFSVRDPKCLELAALHSKAVDFVKSGIPAEMPKYLRPR 1052
Query: 898 KYPDFMEIE---EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLE-- 952
K+P FME + + Q Y S KILG+LY +++ VD P HY++ +
Sbjct: 1053 KWPHFMEKKHKPKEQIYVSKKILGQLYDKVES-----------VDFIP---HYESPFDKR 1098
Query: 953 ----VPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIW-----SMPKYNSRKQG 1003
P AR K YD + ++ Q+++ EF +W S P+ S +
Sbjct: 1099 ILRAYPEDRAILKLARQIKSQYDTAMRRIMAQHDIE-TEF-EVWTSFVLSKPRVGSDYK- 1155
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKM--NSDFELSDNEKNVLY----EQKASAWYQ-----V 1052
+QE + S + F+++ + SDF+ +Y E+ A A ++
Sbjct: 1156 -VQEEMGIISSTLKARFKEICVEAAGGSDFKALGPFATAMYQVTCEELAIALHECRTMKT 1214
Query: 1053 TYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQ--EMANIGKSKPVNNLA 1110
R+ K+ ++ +S+ L+SF WI L RI + + ++G S N A
Sbjct: 1215 IGGRDVPKRKME------PKSMPLMSFPWIFQSVLGRIATGSEPTTLEDVGLSFVTRNEA 1268
Query: 1111 RYVADRI 1117
R R+
Sbjct: 1269 RAKKPRL 1275
>gi|322701339|gb|EFY93089.1| suppressor of ascus dominance [Metarhizium acridum CQMa 102]
Length = 1296
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 245/844 (29%), Positives = 377/844 (44%), Gaps = 130/844 (15%)
Query: 255 FSPSGAIGQCNSKQRVQEDCLSQPVTIREEPDFEVPVEDP--FFCMHYKEGVSFEIMFLV 312
F P G + ++ D L P+ VP P M K + FE+ + +
Sbjct: 293 FDPKGCVFDTKTEAPSLWDYLEHPLA--------VPASQPSALLSMPQKIHLPFEVRYQL 344
Query: 313 NAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIK 372
+ +G+LN++ + F L L+++ +FD KL +++
Sbjct: 345 EVCISRGVLNEYTIGIDFLQELNNLRTMDATHRLEYLVDQNEILFDPM-KLFSMEDATAF 403
Query: 373 NPKLNEGPKNIDDIAEVRRLVITPTKAYW---FLESKD--------VADRFLRVTFMDEG 421
P + VR+ ITPT + +E+ + V DRFLRV F++E
Sbjct: 404 VP----AARIPHYCTYVRKASITPTTIRFNSPTVETSNRVVRKYSHVQDRFLRVQFVEES 459
Query: 422 LQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQL 481
+ + Y V+KRV+ LS G + R+Y FLAF S+QL
Sbjct: 460 -ELVRLGKTKY---------------NNVKVWKRVERALSQGIRIGDRQYEFLAFGSSQL 503
Query: 482 RDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHE 540
R SA+FF S DI+ WMG+F K +AKYAAR+G CFS+T I ++ +
Sbjct: 504 RQSSAYFFCPTDHLSCEDIRAWMGQFDHIKCVAKYAARLGQCFSTTRDIKGIWVPDIKY- 562
Query: 541 LPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD 600
+ DI+RNG F+DG+G I+ L+ + + + LD P+A+Q R G KGV+A WP +
Sbjct: 563 IDDIQRNGQCFTDGVGLISKFLSQLIMEEMTLDIFDKPTAFQFRMGGCKGVLAVWP-QAQ 621
Query: 601 GIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
G+ + +R S +KFKS +LEI LNRQ IT+L +L V +IF + S
Sbjct: 622 GMEVHIRKSQEKFKSNFQALEIVRCAARSTATLNRQTITILESLGVRKKIFMELLKEQIS 681
Query: 661 KLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQ------TEPHLQGMLTYELG 712
+ A ++LT E ++ + +L AGFK T L++
Sbjct: 682 WYENATKDTSEAIKLLTKFVDENQSSLVLAELLKAGFKTDNIQESFTLNIFNLWLSWSFR 741
Query: 713 ELKECQCFIQVSESS-LENCFSKHGS---RFAETK------------------------- 743
LKE + I V +S+ + C + GS ET+
Sbjct: 742 LLKE-KTRIHVPKSAFVLGCVDESGSLRGHSTETEGSSDQLNEKQLPQIFLQLTDPSHEG 800
Query: 744 KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
K I G ++ +NP L PGD+R+++AV+ P+L HL D +VFP KGDRP SG DLD
Sbjct: 801 KTNTIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHLKDVIVFPSKGDRPVPAMLSGGDLD 860
Query: 804 GDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICN 850
GD +++ WD+ LI P + + PM+ + L ++ + NLG I
Sbjct: 861 GDDFFIIWDDRLI-PEEWNHKPMDYEAPSPRQLDRDVTVDDLREFFVNYMKNDNLGLIAV 919
Query: 851 AHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQT 910
AH+ AD YG + C+ LA+L + AVD KTG+ ++P+++P FM E+ T
Sbjct: 920 AHLAFADM--YGPKSQICLRLAELHSQAVDYAKTGEPAEFGYKMQPERWPHFM--EKKST 975
Query: 911 YKSNKILGRLYRQIKG-----------AYDENISVSSEVDINPVDIHYDTDLEVPGSVDF 959
Y+S K LG LY ++ ++DE I E D + +
Sbjct: 976 YRSKKALGALYDEVAKHTFQFRPEWGHSFDERILERYEFDKSTL---------------- 1019
Query: 960 TADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYSAFRK 1018
AR K YD + L+ QY+V + E W M + + QE L + ++
Sbjct: 1020 -TAAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTSISSNYKRQEDLGLEFDVVKQ 1078
Query: 1019 EFRQ 1022
FR+
Sbjct: 1079 RFRE 1082
>gi|358393612|gb|EHK43013.1| hypothetical protein TRIATDRAFT_225118 [Trichoderma atroviride IMI
206040]
Length = 1272
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 235/744 (31%), Positives = 348/744 (46%), Gaps = 114/744 (15%)
Query: 410 DRFLRVTFMDE---GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
DRFLRV F+DE G TMN++ K ++K++ L +G +
Sbjct: 478 DRFLRVQFVDEAESGRMTMNSH-------------------NKEEIWKKLLRTLYEGIQI 518
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
RRY FLAF S+QLR A+FF S DI+ WMG+ + + +AKYAAR+G CFS+
Sbjct: 519 GDRRYEFLAFGSSQLRQSGAYFFCPTDHISCQDIRQWMGQVSHIRIVAKYAARLGQCFST 578
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRY 585
T +P +V + DI+RNGY F+DG+G I+ +A + + L L+ PSA+Q R
Sbjct: 579 TREMKGVPIPDV-RPIADIERNGYCFTDGVGMISGFMARMIVEELTLEVFNDPSAFQFRM 637
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLN 645
G KGV+ WP + +R S +KFK+ +LEI ++ LNRQ IT+L L
Sbjct: 638 GGCKGVLVVWPQAKKS-EVYIRESQEKFKADAKNLEIIKCAKYTSATLNRQTITILEHLG 696
Query: 646 VSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQT--EP 701
V + F + S + VA +L E +T + +L AGFK + EP
Sbjct: 697 VPKKAFMDILEKQISLYEEAAKDNRVAVGMLKKCVDENQSTLVLAELLQAGFKTKNCQEP 756
Query: 702 HLQGML----TYELGELKECQCFIQVSESS-LENCFSKHG-------------------- 736
+ +L ++ L LKE + I + +S+ + C + G
Sbjct: 757 FVVNLLNLWRSWSLKLLKE-KARIAIEQSAFVLGCVDETGTLRGHSNATEGTSDKDVNKL 815
Query: 737 ---------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
S+ +T K VI G V+ +NP L PGD+R++EAVD PELHHL D +VFP
Sbjct: 816 PQIFLQVSDSKIYDTTK--VIKGICVVGRNPSLHPGDIRVVEAVDIPELHHLKDVVVFPS 873
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQ 847
GDRP N SG DLDGD ++V W+ +LI P K + P M + L VN +L
Sbjct: 874 TGDRPVPNMLSGGDLDGDDFFVIWEPSLI-PEKWNHPAMNYSSPPPPKLDRDVNVNDLRD 932
Query: 848 -------------ICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
I AH+ ADR + C+ LA+L + AVD PKTG +
Sbjct: 933 FFVNYMKNDVLPLIATAHLALADR--FDPASPICLRLAELHSKAVDYPKTGDPAEFNHDM 990
Query: 895 -KPKKYPDFMEIEEYQTYKSNKILGRLY-RQIKGAYDENISVSSEVDINPVDIHYDTDLE 952
P+ +P FM E+ Q YKS + LG +Y R IK + + D ++ Y D
Sbjct: 991 YNPQSWPHFM--EKQQRYKSARALGAIYDRVIKQTIEFRPDWENAFDKRILN-RYQLDTG 1047
Query: 953 VPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKH 1011
+ S AR K YD + +L +N+ + E W+M K + QE L
Sbjct: 1048 MLKS------ARQIKGQYDAAVRRILSHHNLGTEFELYTSWAMTKPAIGSDYKRQEELGR 1101
Query: 1012 SYSAFRKEFRQV-FEKMNSDFELSDNEKNVLYEQKASAWYQVT----------YHREWVK 1060
+ A + FR + FE D +K ++ +A Y++T + R
Sbjct: 1102 EFDAIKDRFRGLCFEAAGG----RDEDKIDIF---VAAMYKITEQEIAIALFEHRRGATN 1154
Query: 1061 KSLDLL--EQGSARSVVLLSFAWI 1082
++ +L+ + +S+ L+SF WI
Sbjct: 1155 EASNLIPARKLETKSMPLISFPWI 1178
>gi|310791166|gb|EFQ26695.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1269
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 240/855 (28%), Positives = 388/855 (45%), Gaps = 116/855 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
++FE+ + + + +G+L+++ ++ +F D L ++ L++ + V+D +
Sbjct: 362 LNFEVYYQLEVCISRGVLSEYSITQAFIDELSRMDKDRAKWMLEYFADLAKRVWDPMKMF 421
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF---LESKD--------VADRF 412
+D ++ P + +R++ +TP+ ++ +ES + DRF
Sbjct: 422 ED-EDARFFFPNASMPYY----CTTIRKITVTPSTMHFCSPNVESSNRVLRKYNSYQDRF 476
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE + N + T +F R+ +L G + R Y
Sbjct: 477 LRVQFTDELYKGKVYN------------------NAGTEIFNRIYRVLKQGIKIGNRVYE 518
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q+R+ + +FF T+ DI+ WMGEF+ +N+AKYAAR+G CFS+T
Sbjct: 519 FLAFGNSQIRECAVYFFCPTAYTTCDDIRQWMGEFSHIRNVAKYAARIGQCFSTTREIRG 578
Query: 532 IP-PTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKG 590
+ P V E DI+R GY FSDG+GKI+ LA V + + PSA+Q R G KG
Sbjct: 579 VTVPRIVQAE--DIERGGYCFSDGVGKISKLLAEMVVNEMGQESVGIPSAFQFRMGGCKG 636
Query: 591 VVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEI 650
++A WP G+ + +R S +KFK+ LEI + ++ LNRQ IT+L+TL V E
Sbjct: 637 MLAVWPDA-KGLEVHIRPSQEKFKAQFNGLEIIRFAQYSVATLNRQTITILATLGVESEP 695
Query: 651 FWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQ--TEPHLQGM 706
+ + A +L E + I ++ GF EP + +
Sbjct: 696 ILQLAKQQVQNYEKAMRDRVAAAGLLGRYVDENMTSLTIKDLVCWGFMDTEVQEPFVLTI 755
Query: 707 LT----YELGELKECQCFIQVSESSLENCFSKHGSRFAETK------------------- 743
L + + LKE I + L C + G+ +K
Sbjct: 756 LNLWRIWSVKLLKEKARVIVEQSAFLLGCLDETGTLRGHSKATEGRETRNIEDIPQIFLQ 815
Query: 744 -------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNE 796
K + G ++ +NP L PGD+R++EAVD P L HL + +VFP GDR +
Sbjct: 816 IPNPDDGKFYCVTGVCIVGRNPSLHPGDIRVVEAVDVPALRHLKNVVVFPSIGDRDVPSM 875
Query: 797 ASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL--------------TCHVNH 842
SG DLDGD ++V W+ LIPP PPM+ ++A L ++ +
Sbjct: 876 LSGGDLDGDDFFVIWNPALIPPQWHQ-PPMDYVASKAPVLKRGFVKVSDLRTFFVRYMQN 934
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
L + AH+ AD+S+ GA D CI LA+L + AVD KT P +L+PK++P F
Sbjct: 935 DCLALVAVAHLAQADQSQAGARDGKCIKLAELHSKAVDYVKTADPADFPPYLQPKRWPHF 994
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTAD 962
M TYKS +G++Y I+ D+ + E + ++ T + D
Sbjct: 995 M--NRKNTYKSLSPIGQIYDMIQ---DQALDPLYEKKFDNRILNRFTLTD-----DLLQK 1044
Query: 963 ARNQKCSYDGQLNGLLGQYNVNRKEFR----HIWSMPKYNSRKQGELQERLKHSYSAFRK 1018
AR K YD + L+ +V + EF + S P+ S + QE + +A ++
Sbjct: 1045 ARKVKRQYDTSMRRLMSYRDV-KTEFEAWTGFVLSRPRVGSDYKQ--QEDIGRESAALKQ 1101
Query: 1019 EFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL---EQGSARSVV 1075
FR++ D + +A Y+VT E V +L E+ +S+
Sbjct: 1102 RFREICYNEAGSRNYDD------FAPFVAAMYKVT--EEQVNAALAKEYEDEEHKRQSMP 1153
Query: 1076 LLSFAWIANDYLARI 1090
L+SF WI + + RI
Sbjct: 1154 LISFPWIFHWIMGRI 1168
>gi|17227102|gb|AAL38011.1|AF443073_1 putative RNA-dependent RNA polymerase [Phomopsis sp. CMW 5588]
Length = 1122
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 233/786 (29%), Positives = 365/786 (46%), Gaps = 110/786 (13%)
Query: 389 VRRLVITPTKAYW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
VRR VITPT Y+ + D+ DRFLRV F DE
Sbjct: 172 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDE--------------ITF 217
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
K +S ++ ++ RV ++ +G ++ R Y FLAFS++Q R++ A+FF + +
Sbjct: 218 GKIFSSQDSNKDDNLYIRVHRVMQNGISIGDRHYRFLAFSNSQFRENGAFFFCETDHVTC 277
Query: 498 LDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKR----NGYVFS 552
I+ WMG+F +++ K+AARMG CF++T I + ++ DI+R + + F+
Sbjct: 278 DSIREWMGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPNI-RKIDDIERQTGDHTWNFT 336
Query: 553 DGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKK 612
DG+GKI+ A +A + D PS +Q+R G KGV+ WP + +R S +K
Sbjct: 337 DGVGKISNFFAKLIAS--ERDLPETPSCFQMRIGGGKGVLVVWPDVPPS-EVHVRPSQEK 393
Query: 613 FKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVA 672
FK+ + LEI F N+Q+I +L L V + +F ++ + + L S A
Sbjct: 394 FKAVYNVLEIIKTFAFSHATFNKQVIPVLVALGVDNSVFVSMLDDELREYDEALADSMKA 453
Query: 673 FEVLTASCAEQGNTAAIM-LSAGFKPQTEPHLQGML-------------TYELGELKECQ 718
E+L + E T + + F EP L +L + + K
Sbjct: 454 GELLRSQVDENQTTLTMAEMVDTFMDSKEPFLWTLLRLWKCWILKRLKHKFAISVKKSAM 513
Query: 719 CFIQVSE-------------------SSLENCFSK---HGSRFAETKKLQVINGFVVIAK 756
F V E SL F + GS T +VI G V+ +
Sbjct: 514 VFGVVDEIGVLRGHSQATEGRGYNSIESLPQIFLQVPIEGSDGRSTTNYEVITGICVVGR 573
Query: 757 NPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
NP L PGDVR++EAVD PEL HL + +VFP+ GDR + SG D+DGD Y+V WDE LI
Sbjct: 574 NPSLHPGDVRVVEAVDVPELRHLKNVVVFPKTGDRDIPSMCSGGDMDGDDYFVYWDERLI 633
Query: 817 PPSKKSCPPMECTPAEA---KP-----------LTCHVNHQNLGQICNAHVVHADRSEYG 862
P++ PP+ + KP ++ + +LG+I AH AD+ G
Sbjct: 634 -PTEWDHPPLNHDAGSSTLDKPADVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGG 692
Query: 863 AFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYR 922
+ CI LAKL + AVD K+G+ M HL+P+K+P +ME E+ Y+S LG++Y
Sbjct: 693 VKNPKCIELAKLHSMAVDYIKSGRPAVMKRHLQPRKWPHWMEKEKKSNYRSYSALGKIYD 752
Query: 923 QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYN 982
+IK E + E+ P D + ++ D A A K +YD + L+GQ+
Sbjct: 753 RIK---IEEFHAAYEM---PFDARILSRYQL--EADTLAKASKIKATYDIAMRRLMGQHE 804
Query: 983 VNRKEFRHIWSMPKYNSRKQG---ELQERLKHSYSAFRKEFR-QVFEKMNSDFELSD--N 1036
EF IWS + + G +LQE + +A + FR + E + + +
Sbjct: 805 APVTEF-EIWSTFILSRPRVGSDYKLQENVGRELAALKLRFRAECMEAVTGNIQTEGFAP 863
Query: 1037 EKNVLYEQK----ASAWYQVTYH--REWVKKSLDLLEQGSARS----VVLLSFAWIANDY 1086
+V+ +K +A Y VT++ R +++ G S + L+SF W+ +
Sbjct: 864 ASSVVNLEKLDRFVAAMYTVTHNDVRAALRERSMPKPNGEGGSEEIQMPLISFPWLFHRE 923
Query: 1087 LARIKI 1092
LAR+ +
Sbjct: 924 LARVAL 929
>gi|425780985|gb|EKV18967.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
PHI26]
Length = 1533
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 223/745 (29%), Positives = 349/745 (46%), Gaps = 112/745 (15%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AK 510
++ RVK L++G ++ R Y FLAF ++Q R+H A+FF+ S I+ WMG+F +
Sbjct: 708 IYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHIR 767
Query: 511 NIAKYAARMGLCFSSTHA----TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
N+AKYAAR+G CFS+T A +V++ D+ RNG+ FSDG+GK++ LA V
Sbjct: 768 NVAKYAARLGQCFSTTRAFTGSSVQVATCN------DVVRNGFTFSDGVGKVSKFLAQMV 821
Query: 567 A---QILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI--RMSLRGSMKKFKSCHTSLE 621
I L G PSA+Q R G KG++ P D + + +R S +KF++ LE
Sbjct: 822 TSQHNIKTLTGE-SPSAFQFRLGGAKGMLVVSP---DPMPQEVHIRPSQQKFETTQAGLE 877
Query: 622 ICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCA 681
I W+++ LNRQ+I +LS L + D++F + SM + ++ A +L
Sbjct: 878 IIRWSQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYID 937
Query: 682 EQGNT--AAIMLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESS-------- 727
T A M+S GF+ EP ML ++ L LKE + I + + +
Sbjct: 938 PNQTTLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKE-KAKIAIDQGANLLGVMDE 996
Query: 728 -------LENCFSKHGSRFAE-----------------TKKLQVINGFVVIAKNPCLRPG 763
+N + G+ +A+ + +VI G ++A+NP L PG
Sbjct: 997 TGVLKGYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPSLHPG 1056
Query: 764 DVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSC 823
D+R++ AV+RPEL L D +V PQ GD+ + SG DLDGD Y + WD +LI P++
Sbjct: 1057 DIRVVRAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLI-PTRWFV 1115
Query: 824 PPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCIL 870
M+ ++A L ++ + L +I +AH+ ADR G ++E CI
Sbjct: 1116 ECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEEKCIR 1175
Query: 871 LAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME---IEEYQTYKSNKILGRLYR----- 922
LA+L + AVD K+G M L PK +P FME YKS KILG+LY
Sbjct: 1176 LAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDAVVTP 1235
Query: 923 ----QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLL 978
++ +D I S + I Y AR K +D + ++
Sbjct: 1236 NFVPKLGKPFDSRILESPLASASETYIEY---------------ARELKAEFDMNMRQIM 1280
Query: 979 GQYNVNRKEFRHIWSMPKYNSR---KQGELQERLKHSYSAFRKEFR-QVFEKMNSD---- 1030
QY +N EF +WS + ++QE L R+ FR Q ++K+
Sbjct: 1281 AQYEIN-TEF-EVWSTFVLRHGFVIRDYKMQEDLGRIVGTLRRGFRHQCYDKVGRHGGNI 1338
Query: 1031 FELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARI 1090
L V EQ A+A + ++ L ++E S+ + L+SF WI D L +
Sbjct: 1339 SALVIAMYRVTQEQVAAA-LEAQRKEALQREDLSVVEV-SSTELPLISFPWIFPDVLGDV 1396
Query: 1091 KIKCQEMANIGKSKPVNNLARYVAD 1115
A + + + V++ A+ + D
Sbjct: 1397 ATGRAREALVSEGQGVDDSAKSIGD 1421
>gi|452987327|gb|EME87083.1| hypothetical protein MYCFIDRAFT_202751 [Pseudocercospora fijiensis
CIRAD86]
Length = 1276
Score = 286 bits (731), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 241/776 (31%), Positives = 350/776 (45%), Gaps = 120/776 (15%)
Query: 298 MHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVF 357
+HY + F++ + + + G+L + + F L V L+ + K V+
Sbjct: 232 LHY---LPFKLRYQLEVCLSLGLLLECNIDRDFLKRLAEMDLTRAVKVLEKVADNKERVY 288
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------FLESK 406
+ + ++N K D E+ +V+TP+ Y + K
Sbjct: 289 EPMTIFR------LQNQVSVVTKKKPDYCTEIGSVVVTPSTIYAATMVRETSNRVIRQFK 342
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D DRFLRV F DE + I S+ ++ VF R+K ++ G +
Sbjct: 343 DYEDRFLRVKFTDERYKG---------------KIWSSDDNRMNEVFSRIKRTMTHGIQI 387
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
R Y FLAF ++Q R+H A+FF+ + + I+ WMG F+ + IAKY +R+G CFS+
Sbjct: 388 GDRHYEFLAFGNSQFREHGAYFFAPTEKLTAEMIREWMGRFSHIRVIAKYVSRLGQCFST 447
Query: 526 THATVEIPPTEVD-HELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP--PSAYQ 582
T A P +VD DI+RNGY F+DG G ++P LA +A + S PSA Q
Sbjct: 448 TRAI----PHKVDLGRSVDIERNGYCFTDGAGTMSPFLARMIALHHNVPNSEENFPSAVQ 503
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R AG KGV+A PA G + +R S +KF + + LEIC ++F LN QII +LS
Sbjct: 504 FRLAGCKGVLAVDPAL-KGFAIQIRPSQEKFPAEYHGLEICRISQFSTANLNMQIILVLS 562
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA--AIMLSAGFKPQTE 700
L + DE+F +M + + A E+L + T A M+ GF +
Sbjct: 563 ALGIDDEVFLGKMRAMLVDIKEAMSDERKALELLQKNIDYSQTTILLATMIFDGFMETKD 622
Query: 701 PHLQGML----TYELGELKEC------QCFIQVSESSLENCFSKH-------GSRFAETK 743
P + L ++ L LKE Q F ++ H S A+T
Sbjct: 623 PFMITCLRLWRSWCLKYLKEKARIYVEQGFFGLAVPDETGTLRGHYDKPVSADSDNADTS 682
Query: 744 K-------------------LQV-----------INGFVVIAKNPCLRPGDVRILEAVDR 773
LQV I ++A+NP L PGDVR + AVD+
Sbjct: 683 DEHDAGSDEIASDEDLPEIFLQVPDPDAPGKYRVILSICILARNPSLHPGDVRKVRAVDK 742
Query: 774 PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT---- 829
PELHHL D +V P GDR N SG DLDGD + V WD N I P S PPM+ T
Sbjct: 743 PELHHLRDVVVIPTTGDRDLANMCSGGDLDGDDFMVIWDPNFI-PHGASHPPMDYTSPDP 801
Query: 830 -----PAEAKPLTC----HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVD 880
P +T H+ + NL I AH AD+ G D CI LA+L + AVD
Sbjct: 802 VTSDGPVSVDDMTTFFVKHIKNDNLSSIAVAHRYWADQLADGVKDAKCIELAQLHSKAVD 861
Query: 881 SPKTGKIVTMPSHLKPKKYPDFMEIE---EYQTYKSNKILGRLYRQIKGAYDENISVSSE 937
PKTG M LK +K+P + E + + + Y SN++LG+LY ++K E + +
Sbjct: 862 YPKTGVPAVMTPGLKVQKWPHWSEPKNKSKSKIYHSNRVLGKLYDEVK---KEPFHAAWD 918
Query: 938 VDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS 993
+ P D T E S ADAR K YD + ++ Q+ + + EF IW+
Sbjct: 919 L---PFDQRILTACE--PSDRMLADAREVKAEYDEAIQRIMTQHGI-KTEF-EIWT 967
>gi|391341002|ref|XP_003744822.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Metaseiulus occidentalis]
Length = 1356
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 233/720 (32%), Positives = 344/720 (47%), Gaps = 109/720 (15%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D LRV F D+ L+ + N +T F +K L DG + R
Sbjct: 433 DYMLRVAFRDDNLEKLTHN------------LTREEGRNFLEYF--LKGFLRDGIEIENR 478
Query: 470 RYSFLAFSSNQLRDHSAWFFSK--VGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSST 526
Y +LA SS+QLRDH W+++K G S I+ MG F KN+ K AR GLCFSST
Sbjct: 479 TYEYLAASSSQLRDHGCWYYAKDEHGRDSK-SIREEMGSFDDIKNVGKKMAREGLCFSST 537
Query: 527 HATVEIPPTEVDHELPDIKRNG-------YVFSDGIGKITPDLAMEVAQILKLD-GSPPP 578
TV++ E E DI Y FSDGIGKI+ +L +V + LK P
Sbjct: 538 IETVKVSEDECTIE-EDITGGAHEKSNKPYTFSDGIGKISAELRDDVCEALKDSLRDKKP 596
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEICSWTRFQPGFLNRQI 637
SA+QIR+ G KG+VA P + G R+ LR SM KF S +S E+ ++ + LN+QI
Sbjct: 597 SAFQIRFRGAKGMVAFDPCLE-GRRLVLRKSMVKFASTSSSSFEVIKYSEDRSLTLNKQI 655
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA---AIMLSAG 694
IT+L L V EIF Q + L+ + A E LTAS + + + G
Sbjct: 656 ITILEQLGVPAEIFLRYQEANIIDFADALLFENQAHERLTASIKKDPDCVIDFSKFREFG 715
Query: 695 FKPQTEPHLQGMLTY------------------------------ELGELKECQCFIQVS 724
+P+ + ML E G+L+ Q +++ +
Sbjct: 716 MSVVRDPYFRAMLIELYRYIITNLRDKARISIPWGLGRNLLGVIDETGKLEYGQVYVRYT 775
Query: 725 --------ESSLENCFSKHG-SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE 775
+ ++N + G R A T +V+ G V++ K PC+ PGDVR+LEAVD PE
Sbjct: 776 PREDTSGPDIKVDNNTDEDGVPRQAGT---EVVKGRVLVTKCPCVHPGDVRMLEAVDIPE 832
Query: 776 LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP------PMECT 829
L HL D +VFPQKG RPH NE +GSDLDGD Y V WD+N P P E
Sbjct: 833 LAHLVDVIVFPQKGPRPHPNEMAGSDLDGDEYAVIWDQNFFFADGNHRPMIFDDAPAE-- 890
Query: 830 PAEAKPLTCHVN-------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
P+E+ L + N + N G I NAH+ HADR E G F + C+ LA+ + +D
Sbjct: 891 PSESLELEDYYNFICQFILNDNKGTISNAHLAHADREEDGIFSDKCLRLAEKVSMTLDFA 950
Query: 883 KTGKIVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYRQIKGAYDENISVSSEVDIN 941
KTG++ + K YPDFM+ ++++ TY+S K+LG+LYR + + ++ + +
Sbjct: 951 KTGRLTQLEPSEVVKVYPDFMQKQDHKATYRSEKVLGKLYRASRA-----LEITVKQGSS 1005
Query: 942 PVDIHY-DTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKY 997
+ Y + + E+ G + DA Y+ +L ++G+ + + + + KY
Sbjct: 1006 GCEERYVNENFELEGWEEKKQDALIFVEKYEHRLTNIMGRMGIQSEAEIMVSIVTQVSKY 1065
Query: 998 NSRK---QGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTY 1054
S+ ELQE+L+ + ++ FE+M D ++ +L ASA Y + Y
Sbjct: 1066 MSKSFHDLEELQEQLERQRFFLNLKMKEDFERMTR----GDKDQKMLL---ASAIYMLVY 1118
>gi|380480880|emb|CCF42174.1| RNA dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1271
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 245/857 (28%), Positives = 378/857 (44%), Gaps = 120/857 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ FE+ + + + +G+L+++ ++ F + L + L++ V++ E
Sbjct: 364 LKFEVFYQLEVCISRGVLSEYAITQEFVNQLHRMDKNRAKWMLEYFADQGARVWNPMEMF 423
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVA-----------DRF 412
K+ +E P + +R++++TP+ ++ S + + DRF
Sbjct: 424 KN-EEARFFFPNASMPYY----CTTIRKVIVTPSTMHFCSPSVEASNRVLRKYSSHQDRF 478
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
+RV F DE Y I D VF R+ L G + R Y
Sbjct: 479 IRVQFTDE-----------LYKGKIYNDAGDE-------VFDRIYRALKRGIKIGNRIYE 520
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q+R+ + +FF + DI+ WMGEF KN+AKYAAR+G CFS+T
Sbjct: 521 FLAFGNSQIRECAVYFFCPTDYVTCDDIRKWMGEFNHIKNVAKYAARIGQCFSTTREIRG 580
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
I ++ + DI+R Y FSDG+GKI+ LA V + + PSA+Q R G KG+
Sbjct: 581 ITVPRIE-QAKDIQRGEYCFSDGVGKISKLLAEMVVNEMGQEAVGIPSAFQFRMGGCKGM 639
Query: 592 VACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIF 651
+A WP G+ + +R S +KFK+ LEI ++ LNRQ IT+L+TL V E
Sbjct: 640 LAVWPDA-KGLEVHIRPSQEKFKAQFNGLEIIKSAQYSVATLNRQTITILTTLGVKSEPI 698
Query: 652 WTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGF--KPQTEPHLQGML 707
+ + A +L E + I ++ GF K EP + +L
Sbjct: 699 LKLAKQQIQNYEKAMDDQVAATGLLGKYIDENMTSLTIKDLVCWGFMDKEVQEPFVLTIL 758
Query: 708 T----YELGELKECQCFIQVSESSLENCFSKHG-----SRFAETKK-----------LQV 747
+ + LKE I + L C + G S+ E K LQ+
Sbjct: 759 NLWRIWSMKLLKEKARVIIEQSAFLLGCLDETGILRGHSKATEGKTTRNIHDLPQIFLQI 818
Query: 748 IN----------GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
N G ++ +NP L PGD+R++EAVD P LHHL + +VFP GDR +
Sbjct: 819 PNSEDGKHYCVTGVCIVGRNPSLHPGDIRVVEAVDVPTLHHLKNVVVFPSIGDRDVPSML 878
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL--------------TCHVNHQ 843
SG DLDGD ++V W+ +LI P + PPM AK L ++ +
Sbjct: 879 SGGDLDGDDFFVIWNPDLI-PREWHHPPMNYIAPRAKVLRRGFVKVSDLRTFFVRYIQND 937
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFM 903
L + AH+ AD S GA D C+ LA+L + AVD KT P L PK +P FM
Sbjct: 938 CLALVATAHLALADHSRVGAKDHRCLKLAELHSKAVDYVKTADPAKFPPDLHPKAWPHFM 997
Query: 904 EIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDL--EVPGSVDFT 960
TY+S+ LG++Y I+ + +NP+ +DT + P S +
Sbjct: 998 --NRRCTYRSSSALGQIYDMIQ-----------DQSLNPLYGNKFDTRILTRFPLSDEIL 1044
Query: 961 ADARNQKCSYDGQLNGLLGQYNVNRKEFR----HIWSMPKYNSRKQGELQERLKHSYSAF 1016
AR K YD L L+ +V + EF + S P+ S + E + SA
Sbjct: 1045 RKARKVKTQYDTSLRRLMSHRDV-QTEFEAWTGFVLSKPRVGSDYKQ--HEDIGRESSAL 1101
Query: 1017 RKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLL---EQGSARS 1073
++ +R++ K D + +A Y+VT E V +L E+ S
Sbjct: 1102 KQRYREICYKEAGSRHYDD------FAPFVAAMYKVT--EEQVNAALAKEYEDEEHKRHS 1153
Query: 1074 VVLLSFAWIANDYLARI 1090
+ L SF WI + + RI
Sbjct: 1154 MPLTSFPWIFHWIMGRI 1170
>gi|322705481|gb|EFY97066.1| suppressor of ascus dominance [Metarhizium anisopliae ARSEF 23]
Length = 1315
Score = 282 bits (722), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 229/792 (28%), Positives = 366/792 (46%), Gaps = 100/792 (12%)
Query: 295 FFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKR 354
M K + FE+ + + + +G+LN++ + F L L+++
Sbjct: 360 LLSMPQKIHLPFEVRYQLEVCISRGVLNEYAIGIDFLQELNNLQTMDATHRLEYLVDQNE 419
Query: 355 PVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW---FLESKD---- 407
+FD KL +++ P + VR+ IT T + +E+ +
Sbjct: 420 ILFDPM-KLFSMEDATAFVP----AARIPHYCTYVRKASITATTIRFNSPTVETSNRVVR 474
Query: 408 ----VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
+ DRFLRV F++E + + Y + ++KRV+ LS G
Sbjct: 475 KYSHLQDRFLRVQFVEES-ELVRLGKTKY---------------KNDKIWKRVERALSQG 518
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLC 522
+ R+Y FLAF S+QLR SA+FF G S DI+ WMG+F K +AKYAAR+G C
Sbjct: 519 IRIGDRQYEFLAFGSSQLRQSSAYFFCPTGHLSCEDIRAWMGQFDHIKCVAKYAARIGQC 578
Query: 523 FSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
FS+T I ++ + + DI+RN F+DG+G I+ L+ + + + LD P+A+Q
Sbjct: 579 FSTTRDIKGIWVPDIKY-IDDIQRNDQCFTDGVGLISKFLSQLIMEEMTLDIFDKPTAFQ 637
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R G KGV+A WP + G+ + +R S +KFKS LEI LNRQ IT+L
Sbjct: 638 FRMGGCKGVLAVWP-QAQGMEVHIRNSQEKFKSDFQGLEIVRCAARSTATLNRQTITILE 696
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGF----- 695
+L V ++F + S + A ++LT E ++ + +L AGF
Sbjct: 697 SLGVPKKMFMALLKEQISWYENAAKDTSEAIKLLTKFVDENQSSLVLAELLKAGFMTDNV 756
Query: 696 -KPQTEPHLQGMLTYELGELKECQCFIQVSESS-LENCFSKHGS-------------RFA 740
+P T L++ L+E + I V +S+ + C + GS +
Sbjct: 757 REPFTLNTFNLWLSWSFRLLRE-KTRIHVPKSAFVLGCVDESGSLRGHSIETEGCSDQLN 815
Query: 741 ETK---------------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
E K K +I G ++ +NP L PGD+R+++AV+ P+L HL D +VF
Sbjct: 816 ENKLPQIFLQLTDPSHEGKTNIIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHLKDVIVF 875
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL--------- 836
P KGDRP SG DLDGD +++ WD+ LI P + + PM+ + L
Sbjct: 876 PSKGDRPVPAMLSGGDLDGDDFFIIWDDRLI-PKEWNHKPMDYQAPNPRQLDRDVTVDDL 934
Query: 837 ----TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
++ + NLG I AH+ AD +G + C+ LA+L + AVD KTG+
Sbjct: 935 REFFVNYMKNDNLGLIAVAHLAFADM--HGPKSQICLRLAELHSQAVDYAKTGEPAEFGH 992
Query: 893 HLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI-KGAYDENISVSSEVDINPVDIHYDTDL 951
++P+++P FM E+ TY+SNK LG L+ ++ K + D ++ Y+ D+
Sbjct: 993 KMQPERWPHFM--EKKSTYRSNKALGALFDEVAKHTFQFRPEWEHPFDKRILE-RYEFDM 1049
Query: 952 EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLK 1010
AR K YD + L+ QY+V + E W M + + QE L
Sbjct: 1050 ST------LTTAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTSISSNYKRQEDLG 1103
Query: 1011 HSYSAFRKEFRQ 1022
+ ++ FR+
Sbjct: 1104 LEFDVVKQRFRE 1115
>gi|391331492|ref|XP_003740179.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Metaseiulus
occidentalis]
Length = 1286
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 232/740 (31%), Positives = 347/740 (46%), Gaps = 108/740 (14%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR---------VTFMDEGLQTMNANVLSYY-VAPIV 438
VRR+ +TPT+ +R LR V F D+ L + +VL+ P +
Sbjct: 330 VRRVFVTPTRMILRFADLHTQNRILRHFDSEYAIRVCFRDDNLDKLTFSVLNMREKLPFL 389
Query: 439 KDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL 498
+ + + G + R+Y ++A SS+QLRDH WF++ + S
Sbjct: 390 NHVVGDH--------------IRSGITIGDRKYMYVAASSSQLRDHGVWFYAL--DPSGF 433
Query: 499 D---IKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHE--------LPDIKR 546
D I+ WMG+F+ N+A ARMG CFSST TVE+ P E HE + +
Sbjct: 434 DAASIRQWMGDFSNISNVATRMARMGQCFSSTQETVEVTPLEEVHEDDIWYPEQVHPTSK 493
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKLDGSPP-----PSAYQIRYAGYKGVVACWPAKDDG 601
Y FSDG GKI+P L EV GS P PSA QIRY G KG+V C +G
Sbjct: 494 KPYCFSDGCGKISPSLLSEVW------GSLPHTISQPSALQIRYRGCKGMV-CLDPSLEG 546
Query: 602 IRMSLRGSMKKFKSCHTS--LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMA 659
++ LR SM KF+ C+++ LE+ W+ FLNR I +L V ++F ++ M
Sbjct: 547 RQLVLRKSMVKFE-CNSNRKLEVIKWSAPMNMFLNRPFIAILEHHGVKIDVFLRLELEMI 605
Query: 660 SKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML----TYELGELK 715
++ LV A VLT S + + G++ +P ML L LK
Sbjct: 606 LQIADSLVCEASALRVLT-SFVKTPIPFYGLAETGWQLVQDPFFTQMLFDLLKTSLMSLK 664
Query: 716 E-CQCFIQVSESSL------ENCFSKHGSRFAETKKL------------QVINGFVVIAK 756
E I V+E E ++G F + ++ +V++ VV+ K
Sbjct: 665 EKANIAIPVNEGRNMLGVVDETGLLEYGQVFIQFTEMPSAPFQISQARTRVVDADVVVTK 724
Query: 757 NPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
PCL PGDVR L AVD PELHH+ DC+VFP KG PH E SGSDLDGD Y W E+LI
Sbjct: 725 CPCLHPGDVRRLRAVDIPELHHVRDCIVFPAKGKAPHPFEMSGSDLDGDEYICIWKEDLI 784
Query: 817 -----PPSKKSCPPMECTPAEAKP------LTCHVNHQNLGQICNAHVVHADRSEYGAFD 865
P P+ +P L ++ + +G I NAH+ AD + G
Sbjct: 785 FEENVEPYLYDDKPLGVVKPYQRPVHEVSFLCSYIANDMIGIISNAHLAWAD--QRGLIS 842
Query: 866 ENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYRQI 924
+ C+ L A+ A+D KTG V + + KP+++PDFME +++ +Y+SNK LG LYR +
Sbjct: 843 DECLALVDKASKALDFAKTGHSVDLHPNEKPERFPDFMEKGDHKHSYQSNKALGILYRTV 902
Query: 925 KGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVN 984
+ N D H + LEVPG F DA Y+ +L ++ Q+ +
Sbjct: 903 RQIMSVN-------DTQLSSGHKFSPLEVPGWQMFRDDAYAAMRRYNQRLANIMDQHGIM 955
Query: 985 RKE---FRHIWSMPKYNSRK--QGELQERLKHSYSAFRKEFR-QVFEKMNSDFEL----S 1034
+ I ++ +++ + + + + +A +E R Q F ++ +D + +
Sbjct: 956 SEGEVFSGRIGTLNTFDASRAEKASVALLVDRQKTALMEETREQFFAELKNDCIVLGAHA 1015
Query: 1035 DNEKNVLYEQKASAWYQVTY 1054
++ +L QKASAW+ Y
Sbjct: 1016 AEDRRMLRLQKASAWFMAAY 1035
>gi|452837097|gb|EME39040.1| hypothetical protein DOTSEDRAFT_110589, partial [Dothistroma
septosporum NZE10]
Length = 1155
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 241/805 (29%), Positives = 372/805 (46%), Gaps = 101/805 (12%)
Query: 302 EGV---SFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFD 358
EGV F + + + + G+L++ +S F L E V L+ I ++ +D
Sbjct: 323 EGVVQLPFALRYQLEVCLSIGVLHEVNMSQDFLKRLAAMEPERAVKVLEKIADGRQRYYD 382
Query: 359 AYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW---FLESKD-------- 407
YE L+ + + K P I V +TP+ ++ LE+ +
Sbjct: 383 PYEILRLQSQVSVVEKK---RPAYCTKIPAV---TVTPSTLHFATPVLETSNRVVRQYQQ 436
Query: 408 VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
DRFLRV F DE + I ++ VF R+ ++ G +
Sbjct: 437 YQDRFLRVKFRDELHK---------------GKIFPQDDHSESEVFSRISRAMTHGVKIG 481
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSST 526
R Y FLAF S+Q R+H A+FF+ + DI+ WMG FT K +AKY AR+G CFS+T
Sbjct: 482 DRIYEFLAFGSSQFREHGAYFFASTAALTAADIRKWMGNFTHIKVVAKYCARLGQCFSTT 541
Query: 527 HATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP--PSAYQIR 584
+ IP + DI+RNG+ F+DG GKI+P LA +A L S PSA+Q R
Sbjct: 542 RS---IPHAVNIETISDIERNGHCFTDGSGKISPFLARLIAHHYGLPNSDDDHPSAFQFR 598
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
AG KGV++ PA G+ + +R S +KF + LEIC +++ +LN QII +LS L
Sbjct: 599 LAGCKGVLSVDPAL-RGLTIQIRPSQQKFAAEAFGLEICRISQYSAAYLNMQIILVLSAL 657
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC--AEQGNTAAIMLSAGFKPQTEPH 702
V DE+F +M + + + D A +L + + T A M+ GF +P
Sbjct: 658 GVPDEVFIARVRTMLKDFDEAMKSEDKALILLQKNIDYNQMTLTLASMIMDGFMETKDPF 717
Query: 703 LQGML----TYELGELKEC------QCFIQVS---ESSLENCFSKHGSRFAETKK----- 744
L + L LKE + F ++ E+ + +S E +K
Sbjct: 718 TTTCLRLWRAWSLKYLKEKARVLVEEGFFGIASPDETGILRGYSDDSPSVDEVQKDGDLP 777
Query: 745 ---LQ-----------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD 790
LQ V+ G +A+NP L PGDVR++ AVD PELHH + ++ P GD
Sbjct: 778 EIFLQIPDPDTPGKYIVLLGVCALARNPSLHPGDVRVVRAVDVPELHHKKNEVILPITGD 837
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA------------KPLTC 838
RP N SG DLDGD + V WD++LIPP + P +P A +
Sbjct: 838 RPLANMCSGGDLDGDDFMVIWDKDLIPPERNHEPMDYTSPTPATSEGVVTVADMSRFFVN 897
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
++ + NL +I AH AD + G D C+ LA L + AVD KTG MP+ LK K
Sbjct: 898 YIKNDNLARIATAHRYWADWQDDGVKDPKCLALANLHSMAVDYVKTGVPAYMPADLKVKM 957
Query: 899 YPDFMEIE---EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPG 955
+P + E + + + Y S K+LG+LY ++K SV + D+ P D + +
Sbjct: 958 WPHWSEPKGKSKRKVYTSKKVLGQLYDEVKRE-----SVVAAWDM-PFDDRILSACDPTE 1011
Query: 956 SVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHSYS 1014
S+ DAR K YD + + Q+ + + E + + + + E + S
Sbjct: 1012 SM--LDDAREIKALYDEAVRRAMAQHGIKTEFEVFTTFVLEHHQDINDYKFAETMGEVAS 1069
Query: 1015 AFRKEFRQV-FEKMNSDFELSDNEK 1038
R++ +++ +E+ +D + D E+
Sbjct: 1070 NLRQQHQELCYERAGTDSKSRDWER 1094
>gi|19114207|ref|NP_593295.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe 972h-]
gi|59800170|sp|O14227.1|RDR1_SCHPO RecName: Full=RNA-dependent RNA polymerase 1; Short=Protein rdp1
gi|2330856|emb|CAB11093.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe]
Length = 1215
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 233/795 (29%), Positives = 377/795 (47%), Gaps = 119/795 (14%)
Query: 389 VRRLVITPTKAYWFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+++L +TPT +S KD A+RF+RV DE YY I
Sbjct: 454 IKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDE-----------YYKQKI 502
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
S+ F + ++ R++ +L+ G + + Y FLAF ++QLR+H A+FF+ + +
Sbjct: 503 RGG--SDGFRNEK-LYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNA 559
Query: 498 LDIKNWMGEFTAKN-IAKYAARMGLCFSSTHATVEIPPTEVDHELPD-IKRNGYVFSDGI 555
I+ WMG+F+ N ++KYAARMG CFS+T EI VD L D I RN + F+DG+
Sbjct: 560 KQIREWMGDFSEINSVSKYAARMGQCFSTTK---EINRFCVDISLQDDIVRNNHCFTDGV 616
Query: 556 GKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD----DGIRMSLRGSMK 611
G + + ++ +K + PSA+Q R GYKGV++ P G + R S
Sbjct: 617 GMASLSVIRRLSLEVK-NHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQD 675
Query: 612 KFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDV 671
KFKS H++LE+ +RF LN Q+ITLL L V +F + S SK+N + +
Sbjct: 676 KFKSFHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQK 735
Query: 672 AFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGMLT--------------------- 708
+ +L + E +T I + AGF + + + +L
Sbjct: 736 SILMLRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKG 795
Query: 709 -YELGELKEC---------------QCFIQVSESSLENCFSKHGSRFAETKKLQVINGFV 752
Y LG E + FIQ++++S + GS K +VI G
Sbjct: 796 AYLLGVADETGTLKGHYDDAVLSVPEIFIQITDTS-----TSFGSYSTGKLKTRVIVGLC 850
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++A+NP L PGDVR+ +AV EL HL + +VFP GDR SG DLDGD Y V WD
Sbjct: 851 IVARNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWD 910
Query: 813 ENLIPPSKKSCPPMECTPA------EAKPL--------TCHVNHQNLGQICNAHVVHA-- 856
+ L+P P +E +P E KPL ++ + +LG I NA A
Sbjct: 911 QRLLPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHD 970
Query: 857 -DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
D + G F C+ LA++ + AVD K+G M + PK+YPDFM+ + ++++S
Sbjct: 971 HDNNPEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSET 1030
Query: 916 ILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDLEVPG-SVDFTADARNQKCSYDGQ 973
+G+++R E+ NP+ + YD +++P ++ A K YD
Sbjct: 1031 AVGKIFRYAARFQRES---GRPATYNPIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDND 1087
Query: 974 LNGLLGQYNVNRK-EFRHIWSMPKYNSRK---QGELQERLKHSYSAFRKEFRQVF-EKM- 1027
L ++ +++++ + E + + K + K + L+E + + +K++ Q + EK
Sbjct: 1088 LRSIMARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCA 1147
Query: 1028 ---NSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIAN 1084
S F+ S+ E+ + +A Y VTY + KS+ G+ + VL+SF ++ +
Sbjct: 1148 LSNQSAFDSSEYEERI--NSAVAATYDVTYDQR--VKSV-----GNGTTEVLISFPYLFS 1198
Query: 1085 DYLARIKIKCQEMAN 1099
L ++ K AN
Sbjct: 1199 SRLCQLSRKAMLTAN 1213
>gi|171685025|ref|XP_001907454.1| hypothetical protein [Podospora anserina S mat+]
gi|170942473|emb|CAP68125.1| unnamed protein product [Podospora anserina S mat+]
Length = 1493
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 231/781 (29%), Positives = 358/781 (45%), Gaps = 117/781 (14%)
Query: 387 AEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVA 435
A VR++++TPTK + + + +R F+R+ F DE L+
Sbjct: 527 ALVRKVMVTPTKIIFSTPTVETTNRVIRHYWTFQNYFMRIQFTDEQLEGR---------- 576
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF----SK 491
+ + + ++ RV +L G + + FLAF ++Q+R++ A+ F S
Sbjct: 577 -----VRGSDADRDDDLYTRVYRVLFWGIRMGKWHWKFLAFGNSQVRENGAFMFCQPDSH 631
Query: 492 VGET--SVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATV--EIPPTEVDHELPDIKR 546
G+ S DI+ WMG F K +AKYAAR+G CFS+T PP V+ E +
Sbjct: 632 AGDMVPSCDDIRRWMGNFEHIKVVAKYAARLGQCFSTTRVLRGGTFPPI-VEIEDINTAD 690
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSL 606
+ F+DG+G+I+P L+ VA+ ++ PPPSAYQ R G KGV+ W G + +
Sbjct: 691 GKHCFTDGVGRISPLLSRLVAEDWQV--YPPPSAYQFRMGGCKGVLVGW-KHAKGTEVHI 747
Query: 607 RGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML 666
R S +KF + + LE+ + F LNRQ IT+LS+L V D +F + S+ + +
Sbjct: 748 RPSQEKFSAAYNGLEVVRCSSFSCATLNRQTITILSSLGVPDHVFVDLMREQLSRFDRAM 807
Query: 667 VASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML----TYELGELKECQCF 720
A ++LT+ E T +I M+ +GF EP ++ +L + L LKE
Sbjct: 808 TDGKSAVDMLTSFVDENMTTVSIARMIKSGFMDSNEPFVKTVLQLWRAWSLKTLKEKARL 867
Query: 721 IQVSESSLENCFSKHGSRFAETKK----------------LQV-----------INGFVV 753
+ + C + G+ +K LQ+ I G +
Sbjct: 868 AVEKGAFVLGCVDETGTLRGHSKATEGRQRIRRDQLPQIFLQIPDRDDPSGYKAIAGLCI 927
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
I +NP L PGD+R++EAVD P L HL D +VFP +GDR + SG DLDGD ++V WDE
Sbjct: 928 IGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLEGDRDVPSMCSGGDLDGDDFFVIWDE 987
Query: 814 NLIPPSKKSCPPMECTP--------------AEAKPLTCHVNHQNLGQICNAHVVHADRS 859
L+ P++ S PPM+ TP + A + + L I +AH+ AD
Sbjct: 988 KLL-PTEWSHPPMDHTPQPPVTSDSKKSIMESLASFFVLFMKNDRLPFIAHAHLATADAE 1046
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGR 919
GA E C+ LA++ TG L P+ +P FME + +Y S LG+
Sbjct: 1047 PQGAKSEKCLKLAEM---------TGVPAEWSKKLNPRSWPHFME-RQKGSYHSKTALGQ 1096
Query: 920 LYRQIKGA-YDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLL 978
LY + +D + S D + Y D EV AR K YD + +L
Sbjct: 1097 LYDMVHTQDFDSTKNYQSPFDRRILS-RYMLDQEV------LKTARKIKTQYDIAMRRIL 1149
Query: 979 GQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD--FEL 1033
G + R EF +W+ M K ++QE++ +A R++FR K D FE
Sbjct: 1150 GMLEI-RTEF-EVWTGFVMFKPRVGSDYKVQEKVGREAAALREQFRAECIKAAGDRHFEK 1207
Query: 1034 SDNEKNVLY----EQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLAR 1089
+Y E+ A YQ + +++ + +ARS+ L++F W+ D L R
Sbjct: 1208 LGPFVAAMYQVTCEEMRIALYQARQPQVLADGTIN-ARRITARSMPLVTFPWLFPDELGR 1266
Query: 1090 I 1090
I
Sbjct: 1267 I 1267
>gi|391332207|ref|XP_003740528.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Metaseiulus
occidentalis]
Length = 1437
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 241/794 (30%), Positives = 360/794 (45%), Gaps = 138/794 (17%)
Query: 349 IYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV 408
I+S++R A L + + + P +E +I A +RR+ ITPT+ +
Sbjct: 376 IFSFER----ALRTLFAIHDQSLIEPS-DEEHSHIPGTAYIRRIFITPTRKIFRFPELHT 430
Query: 409 ADRFLR---------VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSI 459
+R LR V F D+ L+ + + + T SF ++ V
Sbjct: 431 QNRILRNFEPDYAIRVCFRDDNLEKLTFAIFNMK--------TKESFLKEV-----VGRH 477
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK-----VGETSVLDIKNWMGEF-TAKNIA 513
L +G + RRY F+A SS+QLRDH W +++ ET I+ WMG+F N+A
Sbjct: 478 LCEGLKIGSRRYDFVAASSSQLRDHGVWVYARDQFGFEAET----IRGWMGDFHDINNVA 533
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDH--------ELPDIKRNGYVFSDGIGKITPDLAME 565
ARMG CFSST TVEI P E H + + Y FSDG GKI+ +L +
Sbjct: 534 TRMARMGQCFSSTQETVEILPEEELHWRDITHFESVHPLSGRPYCFSDGCGKISQELMQQ 593
Query: 566 VAQILKLDGSP-PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK-SCHTSLEIC 623
V L PSA QIRY G KG+++ G ++ LR SM KF+ + LE+
Sbjct: 594 VWCTLPHHAMELHPSALQIRYRGCKGMISL-DTTLPGRKLVLRESMIKFQCTSPRKLEVI 652
Query: 624 SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQ 683
W+ FLNR +I +L + ++F +Q M ++ LV A VLT S +
Sbjct: 653 KWSAPMNMFLNRSLIAILEHHGIRTDVFLRLQLEMIMQVADSLVCEASALRVLT-SFVKT 711
Query: 684 GNTAAIMLSAGFKPQTEPHLQGML------------------------------TYELGE 713
A + G++ +P + ML E G
Sbjct: 712 PVPFAGLAEVGWELVRDPFIIQMLYDLLKNALVNLKVKANVAIPVNEGRNMLGVVDETGI 771
Query: 714 LKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDR 773
L Q FIQ +E + +++++ G VVI K PC+ PGDVR L AVD
Sbjct: 772 LDYGQVFIQFTEMPYTD---------VSNARVRIVEGDVVITKCPCMHPGDVRRLRAVDV 822
Query: 774 PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI------PPSKKSCP--- 824
P+L H+ DC+VFP +G PH E SGSDLDGD Y W E LI P P
Sbjct: 823 PQLRHIRDCVVFPSRGKAPHPFEMSGSDLDGDEYVCIWSEELIFERNAMPYVYDDKPFGV 882
Query: 825 -PMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
P + E ++ + +G I NAH+ AD++ G E C+ L A+ A+D K
Sbjct: 883 NPFKHNSDETNFFCNYIGNDIIGIISNAHLAWADQA--GIASEKCLALVGKASKALDFAK 940
Query: 884 TGKIVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYRQIKGAYDENISVSSEVDINP 942
TG + + KP+K+PDFME +++ +Y+S K LG LYR ++ N ++ S+ +I P
Sbjct: 941 TGDAADLYPNEKPEKFPDFMEKGDHKHSYQSQKALGILYRTVRQIMAVNDTMLSKGNIAP 1000
Query: 943 VDIHYDTDLEVPGSVDFTADARNQKCSYDGQL----------------NGLLGQYN---- 982
LEVPG F A+ Y+ +L +G++G N
Sbjct: 1001 --------LEVPGWQMFRERAQAALQRYNERLAHIMEQHGVVSEGEVFSGVIGTVNTFDA 1052
Query: 983 VNRKEFR-HIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDF-ELSDNEKNV 1040
V+ FR ++ R++ L E K ++F+ FE+ + F ++ ++++
Sbjct: 1053 VSTSSFRAEKANIALLIERQKCVLMEETK-------QQFQCEFEEDCALFGARTEEDRHM 1105
Query: 1041 LYEQKASAWYQVTY 1054
+ QKASAWY VTY
Sbjct: 1106 IRIQKASAWYMVTY 1119
>gi|339242799|ref|XP_003377325.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
gi|316973886|gb|EFV57430.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
Length = 1417
Score = 273 bits (697), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 269/906 (29%), Positives = 419/906 (46%), Gaps = 185/906 (20%)
Query: 294 PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFD-LLRCQPREVIVTALKHIY-- 350
PF+C +Y +L H I+ +QL++ FFD + RC + T + I
Sbjct: 305 PFWCQYY---------WLALGSRHHSIV--YQLTNHFFDEVSRCLTENLRSTEVAFIQLL 353
Query: 351 ----SYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNID-DIA----EVRRLVITPTKAYW 401
+ + + + ++ + V + K L + +I+ D+A VR++VITPT+
Sbjct: 354 CIIDNNSQLIVNVRQRFRQVYD---KQCSLTDNDYSIELDLAAPYVSVRKVVITPTRVLL 410
Query: 402 FLESKDVADRFLR---------VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+ K +++R LR V F DEG + A+ S T +
Sbjct: 411 SVPDKMMSNRILRQFGSDLALRVIFRDEGGTRIPASKFSL-----------------TSL 453
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KN 511
+ V +++ G + R Y FL +S++QLRDH +F++ + +V +I+ WMG+F++ ++
Sbjct: 454 KQIVTTVMMKGLAIGPRLYQFLGWSNSQLRDHGCYFYASTEQVNVEEIRRWMGDFSSIRS 513
Query: 512 IAKYAARMGLCFSSTHATVEIP--------PTEVDHELPDIKRNGYVFSDGIGKITPDLA 563
+ K +RMG CF+ A IP E D + D K + FSDGIG+++ LA
Sbjct: 514 VPKLMSRMGQCFTQAFAITAIPFNPDSKEVLIETDIQSSDSK---FCFSDGIGRMSTKLA 570
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS--CHTSLE 621
EVA+ L+L P PSA+QIRYAG+KG++ P D ++M R SM KF + HT LE
Sbjct: 571 EEVAERLEL--WPVPSAFQIRYAGFKGMLCVDPRLDGDVKMVFRQSMHKFHTEGAHT-LE 627
Query: 622 ICSWTRFQPGFLNRQIITLLSTL----------NVSDEIFWTVQASMASKLNLMLVASDV 671
I ++ LNR +I +L + V + I + + +L+ ML+ D
Sbjct: 628 IVKHSQPCEVNLNRPLIMILDQVAFKEGVPVNGRVQNRIMQLLDQQIC-ELSQMLLFEDQ 686
Query: 672 AFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY---------------------- 709
A VL+A+ + N + AGF+ EP + ML
Sbjct: 687 AKSVLSATMHSEMNFEKLA-DAGFRFTEEPFFRNMLLACYKFKVKEKLFRMKIEIDPSLG 745
Query: 710 --------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLR 761
ELG L Q FIQ S + L R E K+ VI G V++ K+P +
Sbjct: 746 RTMYGVMDELGLLHPGQVFIQCSANIL---------RPGEDKR--VITGKVMVTKSPSVV 794
Query: 762 PGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK 821
PGDVRIL AVD H+L D +VFP+ G RP T++ +GSDLDGD Y V WDE L+ +
Sbjct: 795 PGDVRILTAVDLEIYHYLNDVIVFPKIGYRPVTDQMAGSDLDGDEYAVIWDEELMFCN-- 852
Query: 822 SCPPM------------ECTPAEAKPLTCH-VNHQNLGQICNAHVVHADRSEYGAFDE-- 866
+ P M + T + H + ++G+I AH+V +D YG FD+
Sbjct: 853 NYPAMLYEKVISSEIDGDITSDKMVDFFLHYICSDSIGRIAIAHLVASD--SYGIFDDVS 910
Query: 867 NCILLAKLAATAVDSPKTGKIVTMPSHLK----PKKYPDFMEIEEYQTYKSNKILGRLYR 922
NCI A+ + AVD PK+G P L+ P KYPD++ Y+S +LG LYR
Sbjct: 911 NCI--ARKHSMAVDFPKSG---VTPPKLENDEIPLKYPDYIPKCYNSLYRSKWLLGSLYR 965
Query: 923 QIKGAYD-ENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY 981
++ +S++ +V D H L++ + +F AR Y +L+ LL +Y
Sbjct: 966 KVYMLNSIAELSLARKVTTGKSDPH----LKIAEAKNFEEKARAIFQRYKSELHSLLDEY 1021
Query: 982 NVNRKEFRHIWS-MPKYNSR-KQGE------------LQERLKHSYSAFRKEFRQVFEKM 1027
+ EF+ I + K +SR GE L+ RL ++K F F +
Sbjct: 1022 GI-ENEFQLITGKITKMHSRLSDGERDDFSYYNTEKVLKVRLGMLQKKYKKLFVSQFSSV 1080
Query: 1028 NSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYL 1087
S +L++ + + ASAWY V Y + S R+ LSF W+ + L
Sbjct: 1081 VSKEQLANYTE---VQAAASAWYSVAYRDAEI----------SNRTA--LSFPWLVWEVL 1125
Query: 1088 ARIKIK 1093
+K+K
Sbjct: 1126 LDLKLK 1131
>gi|346325393|gb|EGX94990.1| RNA-directed RNA polymerase (Sad-1) [Cordyceps militaris CM01]
Length = 1102
Score = 272 bits (696), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 228/744 (30%), Positives = 345/744 (46%), Gaps = 100/744 (13%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
++ DRFLRV F+ E I KD +N V+KR+ L G +
Sbjct: 243 NLHDRFLRVQFLSETESDR-----------IAKDRYNND-----DVWKRLLRALHKGIRI 286
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
R Y FLAF ++QLR+ S FF S DI+ W+G F +NIAK+ AR+G CFS+
Sbjct: 287 GDRTYEFLAFGNSQLREGSVTFFCPTAYLSCDDIRKWLGNFDHIRNIAKFGARIGQCFST 346
Query: 526 THAT--VEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQI 583
T + +P + + DI+ G FSDG+G I+ L V +KLD PSA+Q
Sbjct: 347 TREVRGIRVPTVRL---IDDIETEGECFSDGVGIISGLLGKLVVDEMKLDVVGEPSAFQF 403
Query: 584 RYAGYKGVVACWPAK-DDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R G KGV+A WP + + + +R S KF + +LEI + LNRQ I +L
Sbjct: 404 RMGGAKGVLAVWPREYAKHMEVCVRKSQIKFTTEANTLEIVKCAKTTTATLNRQTIIILE 463
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTE 700
L VS F + + + + A ++LT E T I +L A F+ +
Sbjct: 464 HLGVSCGAFLELLNAHIKQYEEAMTDRTAAIDLLTKFVDENQTTVIIAELLKADFQ---D 520
Query: 701 PHLQGML----TYELGELKECQCFIQVSESS-LENCFSKHGSRFAETKKLQ--------- 746
P ++ +L ++ L +KE +C I V +S+ + C + G+ +KK +
Sbjct: 521 PFVKNLLKLWRSWSLKLMKE-KCRIHVEKSAFVMGCVDETGTLQGHSKKTEGSNTKRMDD 579
Query: 747 ------------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
+I G +I +NP L GD+R+++AVD L HL D +VFP K
Sbjct: 580 LPQIFLQISNRKYRNKTTIIKGLCLIGRNPSLHAGDIRVVQAVDMQCLRHLKDVVVFPSK 639
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL------------ 836
GDR + SG DLDGD Y+V W+ L+P + PPM P + L
Sbjct: 640 GDRSLPSMLSGGDLDGDDYFVIWEPTLMPKVWNT-PPMHSEPVNPQNLDRDVEVNDLRNF 698
Query: 837 -TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP-SHL 894
++ + LG I +H+ HAD+ G C+ LA+L + AVD PKTG +
Sbjct: 699 VVKYMKNDFLGLIAYSHLAHADKK--GVNSPMCLQLAELHSQAVDYPKTGIPAEWTRAKY 756
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGA-YDENISVSSEVDINPVDIHYDTDLEV 953
+PK++P FM+ + +TY S + LG+LY ++ +D S E D + TD
Sbjct: 757 QPKEWPHFMQ-PKSRTYHSRRALGKLYDRVAHENFDYVPSCEDEFDSRVSQGIHLTD--- 812
Query: 954 PGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYNSRKQGELQERLKHS 1012
D A AR+ K YD LL Q+ + + E W+M K + QE L
Sbjct: 813 ----DILAIARDIKTEYDQAARRLLKQFRLATEFELYSGWAMSKPAVGSDYKRQEDLGQQ 868
Query: 1013 YSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQG--- 1069
+ A ++ FR + + + E + VL +A Y+VT ++ VK L E G
Sbjct: 869 FGALKQRFRDMC--IQAAGEAGGGQLEVL----VAAMYKVT--QDEVKCFLAAAEGGDLT 920
Query: 1070 -SARSVVLLSFAWIANDYLARIKI 1092
S++ + L+ F WI + L +I +
Sbjct: 921 CSSKPMPLIGFPWIFHWVLVKIAM 944
>gi|238015130|gb|ACR38600.1| unknown [Zea mays]
Length = 525
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 180/531 (33%), Positives = 258/531 (48%), Gaps = 76/531 (14%)
Query: 610 MKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS 669
MKKF+S T L I +W++ QP ++NR+II+LLSTL + DE+F ++Q + + ML
Sbjct: 1 MKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNK 60
Query: 670 DVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------------------- 709
+ A VL TAA ML G++P +EP+L +L
Sbjct: 61 EAALSVLGKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKG 120
Query: 710 --------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLR 761
E +L+ Q +I+++++ E +S+ + K VI G V I KNPCL
Sbjct: 121 RVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLH 180
Query: 762 PGDVRILEAVDRPEL--HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
PGDVR+LEAV P L L DC+VFPQ+G+RPH NE SG DLDGDL+++TWD+ LIP
Sbjct: 181 PGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIP-- 238
Query: 820 KKSCPPMECTPAE-------------AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDE 866
+K PM+ T K ++ + LG I AH++HADR A
Sbjct: 239 EKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSP 298
Query: 867 NCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKG 926
C+ LA L + AVD KTG MP L+P+++PDFME E Y SN +LG+LYR
Sbjct: 299 ECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYR---A 355
Query: 927 AYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK 986
A + + P YD DLEV G +F A + +Y +L L+ Y+ R+
Sbjct: 356 ALRHEEDAEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAERE 415
Query: 987 E------FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNV 1040
+ R+ + ++++ E+++R+ + A E R D
Sbjct: 416 DEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRACKEDDA-------- 467
Query: 1041 LYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
+ ASAWY VTYH + +G R SF WI D L IK
Sbjct: 468 --SRVASAWYHVTYHPD---------RRGEKR---FWSFPWIICDTLLAIK 504
>gi|325088329|gb|EGC41639.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1522
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 205/662 (30%), Positives = 310/662 (46%), Gaps = 91/662 (13%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + + + + +G LN++ L ++F L + L+H+ K + E
Sbjct: 531 LPFTVRYQLEVCISQGCLNEYILDETFVLQLAQLGEKKAKELLEHVAMNKAVYYSPMEIF 590
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
I P + + +R ITP+ ++ + S D ADRF
Sbjct: 591 D------IPFPDGVTHGRIPEHCCYMRSADITPSTIHYDIPSVDTSNRVFRYHREHADRF 644
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE Y+ I + N+ + V+ RV IL G + R Y
Sbjct: 645 LRVRFCDEK-----------YMGRIYSNSNGNNLCM-SEVYARVTRILQHGIIIGDRHYE 692
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVE 531
FLAF ++Q R+H A+FF+ + + +I+ MG+ K +AKYAAR+G CFS+T A
Sbjct: 693 FLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNNIKVVAKYAARLGQCFSTTRAVTS 752
Query: 532 IPPT--EVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD--GSPPPSAYQIRYAG 587
P EVD DI+RNGYVFSDG+G+++ L + L ++ PPSA+Q R G
Sbjct: 753 CPVQLKEVD----DIERNGYVFSDGVGRLSHFLTQMIRSDLGINTPSGQPPSAFQFRLGG 808
Query: 588 YKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVS 647
KG++A + G + +R S KF + H LEI + F LNRQ+I +LS L V
Sbjct: 809 CKGILAV-SSDAHGQEVHIRKSQYKFAAAHHGLEIIRHSHFSLATLNRQLILVLSCLGVP 867
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT--AAIMLSAGFKPQTEPHLQG 705
D++F M KL + + A +L T A M+ GF+ EP +
Sbjct: 868 DKVFIAKLRMMMDKLEQAMTNEEQAVHLLQTHVDPNQMTLILADMVRDGFQGSKEPFVSS 927
Query: 706 ML----TYELGELKECQCFIQVSESS-LENCF------------SKHGS----------- 737
+L T+++ LKE + I V E + L C S+ G
Sbjct: 928 LLELWRTWQIKYLKE-KAKIAVDEGAFLLGCIDETKTLKGYFRSSRPGQDATYEERVACL 986
Query: 738 --------RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKG 789
R +E K + +I G ++A+NP L PGD+R+++AV+ P LHHL D +V PQ G
Sbjct: 987 PEIFVQVWRHSEGKYV-IIEGVCILARNPSLHPGDIRVVKAVNAPSLHHLRDVVVLPQTG 1045
Query: 790 DRPHTNEASGSDLDGDLYYVTWDENLIP------PSKKSCPPMECTPAE------AKPLT 837
DR ++ SG DLDGD Y V WD++++P P + P E + K
Sbjct: 1046 DRDISSMCSGGDLDGDDYVVIWDQDILPTDWFHDPMDYAAPKPEVLDRDVTVDDITKFYV 1105
Query: 838 CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
++ + L QI AH+ AD E G +E C+ LA L + AVD K+G V + +LKP+
Sbjct: 1106 NYMQNDRLPQIALAHLALADYMEEGVKNEKCLQLAALHSAAVDYNKSGIPVKLTRNLKPR 1165
Query: 898 KY 899
+
Sbjct: 1166 SF 1167
>gi|290974592|ref|XP_002670029.1| RNA-directed RNA polymerase [Naegleria gruberi]
gi|284083583|gb|EFC37285.1| RNA-directed RNA polymerase [Naegleria gruberi]
Length = 663
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 214/668 (32%), Positives = 322/668 (48%), Gaps = 115/668 (17%)
Query: 504 MGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDL 562
MG+FT K AK AAR G C +ST ++EI T+ + DI+RNG+ F+DGIGKI+ ++
Sbjct: 1 MGDFTDIKTPAKVAARFGQCLTSTTPSIEI--TKDIEPVEDIERNGFTFTDGIGKISEEM 58
Query: 563 AMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEI 622
V + L+L G SA Q R G KGV+A P G ++ R S KF S LEI
Sbjct: 59 MQRVKEKLQL-GESLLSAIQFRCGGGKGVLAIDPTLK-GEQIVFRKSQFKFTSIQKQLEI 116
Query: 623 CSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDV--AFEVLTA-- 678
+++ + GFLNRQ IT+L+ L + DEIF T Q M +++ + DV A+E L+
Sbjct: 117 VDYSKRRSGFLNRQFITILTALGIKDEIFMTKQREMIR--SILSITDDVSKAYEWLSIYH 174
Query: 679 ----------------SCAEQGNTAAIMLSA-------GFKPQTE------PHLQGMLTY 709
A N MLS+ G + +T+ +L G +
Sbjct: 175 SNHTRTFICHVLKYVPEIATSENFIMNMLSSYKEQLLKGLRDKTKIYIEKSAYLMGAID- 233
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+E + F+ +S F + + F V+ G ++ KNP L GD+RI+
Sbjct: 234 EYGVLEENEIFVNLSP-----IFHRPNAEFG------VVKGRCIVGKNPSLHKGDLRIVT 282
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME-C 828
AVDRPEL+HL D +VF +KG RP TN +GSDLDGD ++V WD +LIP S PM+
Sbjct: 283 AVDRPELYHLNDVVVFSKKGKRPITNMITGSDLDGDQFFVYWDPDLIPES--DSEPMDYS 340
Query: 829 TPAEAKP---------------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDEN 867
A AKP + NLG I N H+ ++D + G +
Sbjct: 341 VGAVAKPTNKKDEEEEEYKIKQDDIIDFFIEFITRNNLGLIANTHLANSDFRKNGLTSKE 400
Query: 868 CILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGA 927
C+ L +L +TAVDS K+GK +PS +K +YP FM + YKS K+LG+L+ + +
Sbjct: 401 CLTLCELHSTAVDSAKSGKFAIIPSKVKLYEYPHFMISSMKRKYKSKKVLGKLFDETQFK 460
Query: 928 YDE----NISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSY--DGQLNGLLGQY 981
++ N +S + ++ D Y ++E P +++ + Y + + + G
Sbjct: 461 HETPGKCNKKHNSLLIVDGFD-KYLKEIE-PHYYNYSRFVNSDMVKYGVEDESQIISGWI 518
Query: 982 NVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVL 1041
N N K F H K+ ++ E + + S + K FR VFE+M + ++E+ +
Sbjct: 519 NTNIKCFGH----------KEHDIHETIAITISFYLKHFRNVFEEMVRKY--GESERLAI 566
Query: 1042 YEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIG 1101
ASAWY +T H E + SF WI L I K +E+ +
Sbjct: 567 ----ASAWYYIT-HTE-------------KNQFNIFSFGWINFKELVMIATKEKEI-RVD 607
Query: 1102 KSKPVNNL 1109
+ + NL
Sbjct: 608 SDEEIQNL 615
>gi|156379597|ref|XP_001631543.1| predicted protein [Nematostella vectensis]
gi|156218585|gb|EDO39480.1| predicted protein [Nematostella vectensis]
Length = 523
Score = 265 bits (678), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 182/533 (34%), Positives = 277/533 (51%), Gaps = 59/533 (11%)
Query: 500 IKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDIK--RNGYVFSDGI 555
I+ WMG+F++ + + Y +RMG CFS++ TV I ++ E DI+ Y F+DGI
Sbjct: 1 IRRWMGDFSSIRCVGTYVSRMGQCFSTSLDTVGITVDGIECLEKDDIQTEEKSYTFTDGI 60
Query: 556 GKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS 615
G I+ LA +V +K+ PSA+QIRYAG KGV+A + + ++ R SM+KF+S
Sbjct: 61 GGISSQLARKVT--IKIGKDFIPSAFQIRYAGCKGVLAVDKSLGEK-QLFCRPSMRKFQS 117
Query: 616 CHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV 675
H LE+ +R Q +LN Q+I LLS L +SD++F ++ L L+ +A
Sbjct: 118 SHRRLEVLQTSRPQAVYLNHQVIMLLSNLGISDDVFMSLLEKTLDNLGGTLLDERLAMRQ 177
Query: 676 LTASCAEQGNTAAIMLSAGFKPQTEPHLQGM----------------------------- 706
L+ S ++G + + AG EP + +
Sbjct: 178 LS-SAVKRGISYRDLFDAGVHLTVEPFFRSLNAAVYRDRLMQLLMKARMQLPLESARLMM 236
Query: 707 -LTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDV 765
+ E G L+ Q F+Q S +S + + F + K +V+ G VV+ +NPCL PGDV
Sbjct: 237 GVVDETGVLEYGQVFVQYSAASND---PRSDKEFELSDK-RVLKGPVVVTRNPCLHPGDV 292
Query: 766 RILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP-------- 817
R L A+D P+L HL DC+VFP+ G RPH +E +G DLDGDLY+V W + LIP
Sbjct: 293 RRLVAIDTPKLRHLVDCVVFPKTGQRPHPSEMAGGDLDGDLYFVCWYKPLIPSQEISLYD 352
Query: 818 PSKKSCPP-----MECTPAE-AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILL 871
P PP E T A+ + + ++ LG I N+H AD+ + G E C+ L
Sbjct: 353 PMDYKAPPKREDRTEITSADMTQYIVDYIRMDILGVIDNSHKALADKLKKGVQSEECLFL 412
Query: 872 AKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDEN 931
A+ + AVD+PKTG+ + PK YPDFM + TY+S K+LG+LYR + ++ +
Sbjct: 413 AEAHSYAVDAPKTGQWPDLNGLKLPKSYPDFMMKTDKPTYRSKKLLGKLYRSCR-SFKKL 471
Query: 932 ISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVN 984
S+ +I + D +L V G F +A+N Y +L+ ++G Y +N
Sbjct: 472 AEDSAPKEITKPCL--DPNLLVAGYRRFLDEAKNVYQEYCLRLDHIMGIYGIN 522
>gi|164429758|ref|XP_964248.2| hypothetical protein NCU02178 [Neurospora crassa OR74A]
gi|157073607|gb|EAA35012.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1049
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 196/633 (30%), Positives = 296/633 (46%), Gaps = 96/633 (15%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR--CQ--------PREVIVTALKHIYSYK 353
+ F++ + + + +GI+N+H + F + L C +I+ + Y+ K
Sbjct: 444 LPFDVRYQLEVCISQGIINEHNIDRPFLEKLMEFCDNDNSFGKDRARLILEYVADEYAGK 503
Query: 354 RPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------F 402
R +FD E KD L P P + A VRR+ ITPT+ Y+
Sbjct: 504 R-IFDPMELFKD-HAALAYFPTSFMIPNHC---AWVRRVTITPTRIYFSTPCVEPTNRVI 558
Query: 403 LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSD 462
+ K D F+R+ F DE L+ S + +F RV +L
Sbjct: 559 RQWKHAQDYFIRIQFTDEVLEG-----------------RIKSGEAELPLFLRVYRVLEK 601
Query: 463 GFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGL 521
G + + FLAF ++Q+R+ A+ F + + ++ WMG F+ K IAKYAAR+G
Sbjct: 602 GVAMGPWHWKFLAFGNSQIREAGAFMFCEQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQ 661
Query: 522 CFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAY 581
CFS+T IP + +PD++++G+ F+DG+GKI+P LA VA +D PPPSAY
Sbjct: 662 CFSTTRLVPGIPAPRI-VTIPDVEKDGFCFTDGVGKISPLLAKIVAHDWSID--PPPSAY 718
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
Q R G KGV+ WP G+ + +R S +KF + LE+ ++F LNRQII +L
Sbjct: 719 QFRMGGCKGVLVTWPDVK-GMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVL 777
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQT 699
S+L V D++F + S N + A +L E T I ML+ GF
Sbjct: 778 SSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFMGSQ 837
Query: 700 EPHLQGML----TYELGELKECQCFIQVSESS-LENCFSKHGSRFAETKKLQ-------- 746
EP ++ +L ++ + LKE + + V +S+ + C + G+ K ++
Sbjct: 838 EPFVRTLLQLWRSWSIKTLKE-KARLNVEKSAFVLGCVDETGTLKGHMKVIEDWKDVSSE 896
Query: 747 ------------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
VI G V+ +NP L PGD+R++EAVD P L HL D +VFP
Sbjct: 897 KLPQIFLQIPDDVNGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLT 956
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC---------- 838
GDR + SG DLDGD ++V WD LI P ++S PPM P K L
Sbjct: 957 GDRDVPSMCSGGDLDGDDFFVIWDPLLI-PKERSHPPMISEPIAGKELATEPTVNNLITF 1015
Query: 839 ---HVNHQNLGQICNAHVVHADRSEYGAFDENC 868
++ + NL I +AH+ AD G C
Sbjct: 1016 FVLYMKYNNLPLIAHAHLATADAEVEGVKSPKC 1048
>gi|346977552|gb|EGY21004.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1444
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 212/717 (29%), Positives = 331/717 (46%), Gaps = 131/717 (18%)
Query: 306 FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKD 365
F + + + + +GIL +++LS F D LR ++ K I Y A E+ D
Sbjct: 412 FAVQYQLEVCISRGILCEYKLSQEFLDRLRGLQQD----RAKWILEYFADRGKAVEQPMD 467
Query: 366 VQE-----CLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------FLESKDVA 409
+ E C NP + A VR++V+TPT Y + + V+
Sbjct: 468 IFESHEANCYYPNPVVPHY------CAIVRKVVVTPTTIYLSSPGVEASNRVIRKYQHVS 521
Query: 410 DRFLRVTFMDE---GLQTMNANV-LSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
DRFLRV F DE G + A + L +YV FKRV + +G
Sbjct: 522 DRFLRVQFTDELTRGRISTRAKMELDHYV------------------FKRVYLTMINGIR 563
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI-AKYAARMGLCFS 524
+ R Y FLAF ++Q+R+ A+FF + +++ WMG F +I AK+AAR+G CFS
Sbjct: 564 IGDRHYKFLAFGNSQIRECGAYFFCETAHLKCTEMRQWMGNFNHIHIVAKFAARLGQCFS 623
Query: 525 STHA--TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
+T ++ P ++ +PDI+RNG+ F+DG+GKI+ LA V + + L+ PSA+Q
Sbjct: 624 TTREIRSIRAPNIQI---IPDIERNGHCFTDGVGKISSFLASMVLEEMGLETVETPSAFQ 680
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R G KGV+A WP + G+ + +R S +KFK+ LEI RF LNRQ IT+L+
Sbjct: 681 FRMGGCKGVLAVWP-EAKGMYVHIRKSQEKFKATFNGLEIIRCARFSVATLNRQTITILT 739
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPH 702
+L + E+F + L L + A +QG A ++ + T
Sbjct: 740 SLGIKSEVFMDL-------LQRQLHGYEKAMN-------DQGAAAVLLGRHIDENHTSLA 785
Query: 703 LQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRP 762
L+ ++ + + F+ LQ+ G ++ +NP L P
Sbjct: 786 LRDLINWGFMRHDVQEPFVLTI--------------------LQLWRGVCIVGRNPSLHP 825
Query: 763 GDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
GDVR++EAVD P+L H+ + +VFP GD + SG DLDGD ++V WD NLIPP +
Sbjct: 826 GDVRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSMLSGGDLDGDDFFVIWDPNLIPPV-WN 884
Query: 823 CPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
PM+ + K + VN ++L + LAKL + AVD
Sbjct: 885 FRPMDNVAPQPKVVDRDVNAKDL----------------------SLQLAKLHSKAVDYV 922
Query: 883 KTGKIVTMPSHLKPKKYPDFMEIEEYQT--YKSNKILGRLYRQIKGAYDENISVSSEVDI 940
K+G + L+ +++P FM + Y S LG++Y +++ +V
Sbjct: 923 KSGDPAELGRELRARRWPHFMGERRNKNSLYHSYTALGQIYDRVQ-----------DVPF 971
Query: 941 NPV-DIHYDTDLE---VPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS 993
NP+ + +D + P AR K +YD + L+ Q V+ EF IW+
Sbjct: 972 NPLYEKKFDRRILSRFAPIDNAVLKQARRLKSTYDTAMRRLMAQREVS-TEF-EIWT 1026
>gi|302420105|ref|XP_003007883.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261353534|gb|EEY15962.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1465
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 216/753 (28%), Positives = 340/753 (45%), Gaps = 133/753 (17%)
Query: 306 FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKD 365
F + + + + +G+L +++LS F D LR ++ K I Y A E+ D
Sbjct: 412 FPVQYQLEVCISRGVLCEYKLSQEFLDRLRGLQQD----RAKWILEYFADRGKAVEQPMD 467
Query: 366 VQE-----CLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW-----------FLESKDVA 409
+ E C NP + A VR++V+TPT Y + + V+
Sbjct: 468 IFESHEANCYYPNPVVPHY------CAIVRKVVVTPTTIYLSSPGVEASNRVIRKYQHVS 521
Query: 410 DRFLRVTFMDE---GLQTMNANV-LSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
DRFLRV F DE G + A + L +YV FKRV + +G
Sbjct: 522 DRFLRVQFTDELTRGRISTRAKMELDHYV------------------FKRVYLTMINGIR 563
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI-AKYAARMGLCFS 524
+ R Y FLAF ++Q+R+ A+FF + +++ WMG F +I AK+AAR+G CFS
Sbjct: 564 IGDRHYKFLAFGNSQIRECGAYFFCETVHLKCTEMRQWMGNFNHIHIVAKFAARLGQCFS 623
Query: 525 STHA--TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
+T ++ P ++ +PDI+RNG+ F+DG+GKI+ LA V + + L+ PSA+Q
Sbjct: 624 TTREIRSIRAPNIQI---IPDIERNGHCFTDGVGKISSFLASMVLEEMGLETVETPSAFQ 680
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
R G KGV+A WP + G+ + +R S +KFK+ LEI RF LNRQ IT+L+
Sbjct: 681 FRMGGCKGVLAVWP-EAKGMYVHIRKSQEKFKATFNGLEIIRCARFSAATLNRQTITILT 739
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQ-- 698
+L + E+F + + A +L E + A+ +++ GF
Sbjct: 740 SLGIKSEVFMDLLQRQLHSYEKAMNDQGAAAVLLGRHIDENHTSLALRDLINWGFMRHDV 799
Query: 699 TEPHLQGML----------------------TYELGELKECQCFIQVSESSLENCFSKHG 736
EP + +L + LG + E + +S S++
Sbjct: 800 QEPFVLTILQLWRVWSMKLLRDKARIVVDKGAFVLGCVDETATLRGHNRASEGQTTSRNV 859
Query: 737 SRFAET----------KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
+ VI G ++ +NP L PGD+R++EAVD P+L H+ + +VFP
Sbjct: 860 ELLPQIFLQIPDPDDRHFFNVIKGVCIVGRNPSLHPGDIRVVEAVDVPQLRHMKNVVVFP 919
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLG 846
GD + SG DLDGD ++V WD +LIPP + PM+ + K L VN ++L
Sbjct: 920 STGDVDVPSMLSGGDLDGDDFFVIWDPDLIPPV-WNFRPMDNAAPQTKVLDRDVNTKDL- 977
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFM--E 904
+ LAKL + AVD K+G + L+ +++P FM
Sbjct: 978 ---------------------SLQLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGGR 1016
Query: 905 IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDLEV---PGSVDFT 960
+ Y S LG++Y +I+ +V NP+ + +D + P
Sbjct: 1017 RNKNSIYHSYTALGQIYDRIQ-----------DVPFNPLYEKKFDRRILTRFAPIDNAVL 1065
Query: 961 ADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS 993
AR K +YD + L+ Q V+ EF IW+
Sbjct: 1066 KQARRLKSTYDTAMRRLMAQREVS-TEF-EIWT 1096
>gi|213407476|ref|XP_002174509.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
gi|212002556|gb|EEB08216.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
Length = 1213
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 229/830 (27%), Positives = 367/830 (44%), Gaps = 135/830 (16%)
Query: 351 SYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVA- 409
++ R VF + L+ L++N G K + V+++ ITPT S +
Sbjct: 418 TFARKVFVSKPSLE-----LVQNQSSASGKKFTSGLNSVKKVCITPTTVKVMDNSLEAGN 472
Query: 410 ----------DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKT-GVFKRVKS 458
DRFLR+ +E + + I SN + K V+ RV
Sbjct: 473 RVIRHFSQYNDRFLRIQITEENTK---------------RKIRSNPDALKQESVYARVYQ 517
Query: 459 ILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAA 517
++S G + + FLAF ++QLR+H A+FF+ + S I+NWMG+F+ +++AKYAA
Sbjct: 518 LMSHGIIIGKTHFEFLAFGNSQLREHGAYFFASGEDESADSIRNWMGDFSNNESVAKYAA 577
Query: 518 RMGLCFSSTHATVEIPPTEVDHE-LPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSP 576
RMG CFS+T ++ +V E DI RN F+DG+G + + A ++D
Sbjct: 578 RMGQCFSTTK---DLKRFQVKVEKRNDIIRNDSCFTDGVGMASLSVMKRTAS--EMDNEE 632
Query: 577 P-PSAYQIRYAGYKGVVACWPAK----DDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPG 631
PSA Q R GYKGV++ P G + R S +KFKS T LE+ +RF
Sbjct: 633 MFPSAVQFRMGGYKGVLSLAPPTLLEYHKGNLVFTRDSQEKFKSNFTVLEVIKVSRFSHA 692
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI-- 689
LN Q+ITLL L V +F + + +L + L A +L E +T +
Sbjct: 693 HLNMQLITLLEGLGVPTSLFVDLAKNELKELTISLKDPRRAVTLLRNHVDEYRSTLILAD 752
Query: 690 MLSAGFKPQTEPHLQGMLTY----------------------------ELGELKEC---- 717
+++ GF + + + ++ E G LK
Sbjct: 753 LIACGFMQRNDSFTKNLINLYFEWVVRTIKEKQRLRVKEGAFLMGVADETGTLKGHYNDS 812
Query: 718 -----QCFIQVSESSLENCFSKHGSRFAETK-KLQVINGFVVIAKNPCLRPGDVRILEAV 771
+ FIQ+++ S K+ K K +I G V+ +NP L PGDVR+ AV
Sbjct: 813 VLPIPEVFIQITDPS------KNADATVTGKIKTTIIMGLCVVVRNPALHPGDVRVCRAV 866
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS------------ 819
EL HL + +VFP GD T +G DLDGD Y V WD N +P
Sbjct: 867 RCNELLHLKNVIVFPTTGDLSVTEMCAGGDLDGDEYTVIWDPNFLPKIVNYPPYIDNAAK 926
Query: 820 -----KKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHA-DRSEY--GAFDENCILL 871
K+ PP+E A ++ +++LG I N+ A DR G F C+ L
Sbjct: 927 RILTFKEGVPPIESIKAF---FVRYIKYESLGLISNSWKAWAHDRVNNPDGIFGSICLKL 983
Query: 872 AKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDEN 931
+ L +TAVD PK+G MP +PK YPDFME +E++++ + +G +YR +
Sbjct: 984 SALHSTAVDYPKSGVAAIMPQEYRPKAYPDFME-KEFRSFPAMTAVGEIYRYASAFQSQY 1042
Query: 932 ISVSSEVDINPVDIHYDTDLEVPG-SVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRH 990
+ +N YD +++P + A+ K YD L ++ +++ + E+
Sbjct: 1043 FKKAYSSKLNN---DYDETMKLPPYKQQYIEIAKKSKEQYDNDLRSVMTHFDI-KTEYEI 1098
Query: 991 IWSMPKYNSRKQG-----ELQERLKHSYSAFRKEFRQVFEKM-----NSDFELSDNEKNV 1040
S N K+ L+E + +SA +K + + + +S ++S E
Sbjct: 1099 FTSFLLLNKDKETIINEYALREEIAFQFSALKKHHTENYFALCGLAPSSVKDMSKQEYEQ 1158
Query: 1041 LYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARI 1090
+ +A Y V + ++ + + +G+ +VL SF +I + L RI
Sbjct: 1159 RIDSAVAAAYDVMH-----EEKIAAIAEGTD-DLVLTSFPYIFHKVLCRI 1202
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 170/551 (30%), Positives = 260/551 (47%), Gaps = 76/551 (13%)
Query: 303 GVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEK 362
G+ F+ ++ + + + LN + L +F+ L+ + L+ + K ++D
Sbjct: 579 GLDFDTLYSLESAISYNFLNVYNLDRTFYQALKALECSAVREYLEMVVIRKTRLWDPLAD 638
Query: 363 LKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVA-----------DR 411
L D Q+ +L K V +++ITPT + S +V DR
Sbjct: 639 LSDQQK------RLGAIHKVPSRCFLVNKVIITPTSVFIEPRSLEVGNRVLRHFQDHIDR 692
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRV F+D+G + A + ++ R++ + G + R Y
Sbjct: 693 FLRVQFLDDGFNRVCA-------------VRKPGDRMNEALYVRIRKLFDQGLQIGDRYY 739
Query: 472 SFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATV 530
FLA+SS+QLR+H WFF+ + + I+ WMG+F+ K ++KYAARMG CFSS+ A
Sbjct: 740 EFLAYSSSQLREHGCWFFASGKDLTAEMIRRWMGDFSREKVVSKYAARMGQCFSSSVAIC 799
Query: 531 EIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKG 590
EV+ +PD+K NGY+FSDG+GK++ LA + + L PSA Q+R G KG
Sbjct: 800 SFHADEVE-TIPDMKHNGYIFSDGVGKMSLALAKKTRNQMNL--GVDPSALQVRLGGSKG 856
Query: 591 VVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEI 650
V+A P G+ + LR S KF + H LE+ ++ G+LNRQII L+S L V D
Sbjct: 857 VLAVDPNLPKGVHVQLRPSQIKFDTDHLELEVVKIATYRNGYLNRQIIILMSALGVRDAY 916
Query: 651 FWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIM--LSAGFKPQTEPHLQGMLT 708
+ +M +L A L+ + G + ++ + AGF +P++Q +L
Sbjct: 917 VLELVNTMLQNTEKILTDPLEALYALSPRSDDFGTSNMLVNAIQAGFLKSGDPYIQNILV 976
Query: 709 Y----------------------------ELGELKECQCFIQVSESSLENCFSKHGSRFA 740
E G L+ + F+QV ++S A
Sbjct: 977 LFRCSLLKELKKKAKVLVPKSACLIGVVDETGLLESNEVFVQVWDNS------------A 1024
Query: 741 ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGS 800
QVI V I +NP L PGD+R+L+AVD PELHHL + +VF KG+R + SG
Sbjct: 1025 TGNINQVITDRVSIFRNPSLHPGDLRVLQAVDIPELHHLKNVVVFSSKGERDVPSMCSGG 1084
Query: 801 DLDGDLYYVTW 811
DLDGD Y W
Sbjct: 1085 DLDGDEYTYEW 1095
>gi|409039622|gb|EKM49158.1| hypothetical protein PHACADRAFT_201955 [Phanerochaete carnosa
HHB-10118-sp]
Length = 908
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 222/786 (28%), Positives = 347/786 (44%), Gaps = 123/786 (15%)
Query: 274 CLSQPVTIREEPDFEVPVED-PFFCMHYKEGVS-------FEIMFLVNAVMHKGILNQHQ 325
C+ + I +PDF P E P M E V F+ +L+ A++ G + +
Sbjct: 48 CMVRLRMINLDPDFSTPTEHVPVQAMPGAEFVDRCLQCLPFDKRYLIEALLSHGTITIPE 107
Query: 326 LSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDD 385
+ + L Q + + L+ ++ + R + EK D+Q+ + +L+
Sbjct: 108 VDELLRALAHYQRDDDQIVILEGLFKWTRQA--SIEK--DLQDVARRATRLHISDTG-RH 162
Query: 386 IAEVRRLVITPTKAY-----W------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYV 434
+ VRR ++TPT+ W + + DRFLRV F+D+
Sbjct: 163 LTAVRRCLVTPTRCVLNPPTWETSNEMLRDHEHYVDRFLRVQFVDDDGDF---------- 212
Query: 435 APIVKD--ITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV 492
P+V + + + + GVF RV+ LSDG + GR Y F FS +Q ++ W ++
Sbjct: 213 -PVVGETLVIDDEMQGREGVFARVRRALSDGLVIAGRHYVFATFSESQAKERGCWMIAED 271
Query: 493 GETSVLDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVF 551
G +V + MG+ + + I AK+AAR ++ L DIKRN YVF
Sbjct: 272 GPFTVSAVLAKMGDLSQERIIAKHAARQRGSMPKK--------ITINRALDDIKRNSYVF 323
Query: 552 SDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI---RMSLRG 608
+DG+G + LA A+ L P SA QIR G KGV+A +D+ + + LR
Sbjct: 324 TDGVGHFSHSLAQACAKTLGYR-LIPVSAAQIRIGGAKGVLAV--VQDETLGENEVRLRP 380
Query: 609 SMKKFKSC--HTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA-------SMA 659
SM K + +L I + LNRQ I L+ VS + + + +
Sbjct: 381 SMIKLQGVKPEPTLNIIKVATYSKATLNRQAILLMEDRGVSSDTLFDIFTQEKRRIQGLE 440
Query: 660 SKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE------ 713
S + M +AS F + A + + +++ K + L+ EL E
Sbjct: 441 SGFDPMRLASVTTFPLARALRHDIKDPVVQNVTSLVKCRLLCDLKWKAWIELSESAYLMG 500
Query: 714 -------LKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVR 766
L+E + F Q+ S + QVI I +NPCL PGDVR
Sbjct: 501 IADETDSLQEGEIFCQIHPSGSDP---------------QVIEARCTIYRNPCLHPGDVR 545
Query: 767 ILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
++ AVD P+L HL + +VF +G R N +G DLDGD Y + WD L+ P PM
Sbjct: 546 LVTAVDCPKLRHLRNVIVFSTRGCRDLPNMLAGGDLDGDCYSLIWDPRLLIPEGGEYEPM 605
Query: 827 ECTPAEA----KPLTCHVNHQN---------LGQICNAHVVHADRSEYGAFDENCILLAK 873
+ TP A P+T Q+ LG++CNAH+ AD +G D C LA
Sbjct: 606 DYTPPPAVRSEYPVTIEQTKQHFLDTMKNDVLGRVCNAHMALADL--HGPSDFQCRELAS 663
Query: 874 LAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE----------EYQTYKSNKILGRLYRQ 923
LA+ AVD KTG V + ++YPDFM E E ++Y S K+LGR++R+
Sbjct: 664 LASQAVDFSKTGVAVQQSEIPRLEEYPDFMGKEYKSIRIFKKQEIRSYSSEKVLGRMFRE 723
Query: 924 I--KGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY 981
I + ++E + ++ + + E G ++ +A K Y+ +L GLL +Y
Sbjct: 724 IDPEPIFEEAVELAGDPRLLEAG-------EETGFREYLQEAAMHKARYEFELTGLLRRY 776
Query: 982 NVNRKE 987
N+N E
Sbjct: 777 NINETE 782
>gi|367021614|ref|XP_003660092.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
gi|347007359|gb|AEO54847.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
Length = 1033
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 192/635 (30%), Positives = 296/635 (46%), Gaps = 94/635 (14%)
Query: 303 GVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR---------CQPREVIVTALKHIYSYK 353
+ F++ + + + +GIL+++ + + + L R ++ L++
Sbjct: 424 ALPFDVRYQLEVCVSRGILSEYNIGREWLEKLSSFSGPANWGAANRARLI--LEYAADQG 481
Query: 354 RPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLES-------- 405
RP+ D E KD + P P D A +RR ++TPT+ Y+ +
Sbjct: 482 RPIHDPLELFKD-HGAMTYYPATLHIP---DYCALIRRAIVTPTRMYFSTPTVETSNRVV 537
Query: 406 ---KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSD 462
+ + D FLRV F DE L I + + ++ RV +++
Sbjct: 538 RRYQHIQDHFLRVQFTDELLD---------------GRIRACEVDRDDELYARVCRVMTQ 582
Query: 463 GFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL--DIKNWMGEFT-AKNIAKYAARM 519
G + + FLAF ++Q+R+ +A+FF + + SV I+ WMG F ++AK AAR+
Sbjct: 583 GIRMGKWHWKFLAFGNSQIRESAAFFFCEPEDGSVTCDSIRQWMGNFDHITSVAKLAARL 642
Query: 520 GLCFSSTHATVEIPPTEVDHELPDIK-RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
G CFS+T I + +PD++ NG+ F+DGIGKI+ LA VA+ KLD PP
Sbjct: 643 GQCFSTTRLLHCISSPRIA-RIPDVESENGFCFTDGIGKISLPLACLVAEDWKLDR--PP 699
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
SA Q R G KGV+ WP G + +R S +KF + + LEI ++F LNRQ I
Sbjct: 700 SAVQFRMGGCKGVLVQWP-NVKGTEIHIRPSQEKFCAEYNGLEIIRCSQFSCATLNRQTI 758
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFK 696
+LS L VSDE+F + AS + + + D A E+L E T I ML GF
Sbjct: 759 LILSCLGVSDEVFIDMMASQIANFDAAMTDKDTAVELLDNYVDENLTTTTIASMLRNGFM 818
Query: 697 PQTEPHLQGML----TYELGELKECQCFIQVSESSLENCFSKHG-----SRFAETKK--- 744
EP ++ +L ++ + LKE + + + C + G SR E +
Sbjct: 819 HTREPFVRTVLQLWRSWSIKALKEKARLVVEQGAFVLGCVDETGTLRGYSRATEGQSNVS 878
Query: 745 -------------------LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
+V+ G ++ +NP L PGD+R++EAVD P+L HL D +VF
Sbjct: 879 RDQLPQIFFQVPDRDHRHAYKVVTGLCIVGRNPSLHPGDIRVVEAVDVPQLRHLRDVVVF 938
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLI------PPSKKSC--PPMECTPAEAKPL- 836
P +GDR + SG DLDGD ++V WD L+ PP S PP+E + AK L
Sbjct: 939 PLRGDRDVPSMCSGGDLDGDDFFVIWDPRLLPAEWGHPPMNYSAPQPPIESRASLAKSLA 998
Query: 837 ---TCHVNHQNLGQICNAHVVHADRSEYGAFDENC 868
+ + L I +AH+ AD GA C
Sbjct: 999 FFFVLFMKNDRLPLIAHAHLARADYELEGAKHWKC 1033
>gi|453080014|gb|EMF08066.1| RdRP-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 446
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 162/440 (36%), Positives = 229/440 (52%), Gaps = 59/440 (13%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-K 510
VF RVK ++ G N+ GR Y FLAF + Q RDH A+FF+ + DI++WMG+FT+ +
Sbjct: 11 VFSRVKRAMAQGINVGGRHYEFLAFGNAQFRDHGAYFFASTTGVTAADIRDWMGDFTSIR 70
Query: 511 NIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL 570
IAKY +R+G CFS+T A IP ++ D++RNG+ F+DG+GKI+P LA +A
Sbjct: 71 IIAKYVSRLGQCFSTTRA---IPHAVNVEKIDDVERNGFCFTDGVGKISPFLARMIAHHY 127
Query: 571 KLDGSPP--PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
+ S PS +QIR AG KGV+A P + G+++ +R S +KF + LEIC ++F
Sbjct: 128 GMANSEQDYPSVFQIRLAGCKGVLAVDP-RLKGMKIQIRPSQQKFPAKSNGLEICRISQF 186
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC--AEQGNT 686
LN Q+I +LS L V DE+F +M S L L + A E+L + + +
Sbjct: 187 STASLNVQLILVLSALGVPDEVFLNKLRNMLSDLQEALDSEQKALELLQKNVDFNQMTIS 246
Query: 687 AAIMLSAGFKPQTEPHLQGML----TYELGELKE-CQCFIQVS----------------- 724
A M+ GF +P + L ++ L LKE + FI
Sbjct: 247 LACMIFDGFMATKDPFVMTCLRLWRSWNLKYLKEKARIFIDQGAFLLGCTDESATLRGHF 306
Query: 725 ------------ESSLENCFSKHGSRFAETKKLQ-----------VINGFVVIAKNPCLR 761
+ S E KH LQ V+ G VV+A+NP L
Sbjct: 307 KSVADPNGILKDQQSTEADVDKHDESALPEIFLQIPDAEKPGSYKVVTGIVVLARNPSLH 366
Query: 762 PGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK 821
PGD+R+++AVD L HL +C+V PQ GDR N SG DLDGD + V WD+ LIPP +
Sbjct: 367 PGDIRVVKAVDNAALRHLKNCVVLPQTGDRDVANMCSGGDLDGDDFIVMWDKELIPP-EW 425
Query: 822 SCPPMECT---PAEAK-PLT 837
+ PM+ T P AK P+T
Sbjct: 426 NHEPMDYTSPDPVMAKGPVT 445
>gi|429963046|gb|ELA42590.1| hypothetical protein VICG_00342 [Vittaforma corneae ATCC 50505]
Length = 2092
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 180/568 (31%), Positives = 276/568 (48%), Gaps = 121/568 (21%)
Query: 451 GVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD----IKNWMGE 506
GV+ + ++ +GF + R+Y FLA +++QL+ H +WF + ++ IK+W+G
Sbjct: 892 GVYDYFRRVMLNGFVIGLRKYFFLAMTTSQLKIHGSWFITPYEHDDMVIGADYIKSWIGN 951
Query: 507 F-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAME 565
F KNI KYA R+GL SST T P E+ DI++N Y F+DGIG IT A
Sbjct: 952 FHKIKNIGKYAIRIGLALSSTTPTY---PFNDFVEVDDIQKNSYCFTDGIGLITKKWAHN 1008
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWP----------------------------- 596
++ IL L PSA+QIR+ GYKGV+A P
Sbjct: 1009 ISNILGL--GFIPSAFQIRFGGYKGVIAVHPWMDEQKNFEEWLTVNSNIVRGYGKYSNIN 1066
Query: 597 -------AKDDGIR----------------MSLRGSMKKFKSCHTSLEICSWTRFQPGFL 633
+ +D + + +R SM KF S + +LEI + ++ +L
Sbjct: 1067 SLLYSNTSSNDAVNSFHQIVASFKQLGTPDLIVRKSMNKFDSSYRTLEIIAVSKSSSFYL 1126
Query: 634 NRQIITLLSTLNVSDEIFWTVQ----ASMASKLN-------------LMLVASDVAFE-- 674
NRQII +L L V +IF +Q +M SKL+ M +++D+ F
Sbjct: 1127 NRQIILILEGLGVPIQIFIDLQDKYIQNMLSKLSQDFTLFIKKYVNTTMNISTDLPFYRK 1186
Query: 675 ----VLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVS---ESS 727
+L+ E + I++ G G+L ELG L+E Q F + S
Sbjct: 1187 LQSPILSKVFEELNTKSKILIGQG------RSAIGVLD-ELGILEEDQIFCMFQKDVDES 1239
Query: 728 LENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
+EN +GS V N + ++AKNP + PGD+R+++ VD P+LH+L + +VF +
Sbjct: 1240 MEN-LKDYGSYI-------VPNCYCIVAKNPVMHPGDIRVVKCVDAPKLHYLKNVIVFSK 1291
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME----CTPAEAKPLTC----- 838
KG RP N+ SGSDLDGD++ V+W + LIP K + P C + K L
Sbjct: 1292 KGSRPIFNQCSGSDLDGDIFLVSWCKALIP--KATFKPYNYINTCALIKDKVLLSDIVNF 1349
Query: 839 ---HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
H+ LGQI ++++ +D+ + F+E + L+ + +D KTG I ++P L
Sbjct: 1350 YIRHMKFYQLGQIAHSYLAMSDK--FSIFNEKSLRLSDIFNKNIDYVKTGHITSIPEDLI 1407
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQ 923
P +YPDFM E +Y S K +G LYR+
Sbjct: 1408 PTEYPDFM--ERSPSYYSTKAIGHLYRR 1433
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 246 bits (627), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 153/384 (39%), Positives = 219/384 (57%), Gaps = 34/384 (8%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
++ G +V+AKNPCL PGDVR+L AV+ P LHH+ DC+VFPQKG RPH NE SGSDLDGD+
Sbjct: 548 ILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 607
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHV 853
Y+V WD +LIPP + + PM+ TPA K L T ++ + +LG I NAH
Sbjct: 608 YFVCWDRDLIPPQQIN--PMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHT 665
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKS 913
V AD+ A+ + C LAKL + AVD PKTG +P +L+ K+YPDFME + TY+S
Sbjct: 666 VFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYES 725
Query: 914 NKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQ 973
++G+L+R++K N ++ S + YD D+EV G D+ +DA K YD +
Sbjct: 726 QSVIGKLFREVKDIAPHNCNIRS-FTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYK 784
Query: 974 LNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSD 1030
L L+ Y + + I M K R++ E + + + RKE R F KM S+
Sbjct: 785 LGNLMDYYGIKTESEILSGSIMRMSKSFDRRKD--AEAIGLAVKSLRKEARTWFNKMGSE 842
Query: 1031 FELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARI 1090
+D+E + +Y KASAWY VTYH ++ +G R LSF W D L I
Sbjct: 843 ---TDSEADDVY-AKASAWYHVTYHPDY----WGCYNEGMDRD-HFLSFPWCVYDKL--I 891
Query: 1091 KIKCQEMANIGKSKPVNNLARYVA 1114
K ++M+ G+S +++L R ++
Sbjct: 892 HTKRKKMS--GRSLHLSSLERRLS 913
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 142/438 (32%), Positives = 221/438 (50%), Gaps = 75/438 (17%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNSKQRVQEDC 274
+L+ L +P+I + D+ VL + DD W+R DF+PS IGQ + C
Sbjct: 133 LLIQLLGAPQI----YEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFAL------C 182
Query: 275 LSQPV-----TIRE------EPDFEVPVED-----------PFFCMHYKEGVSFEIMFLV 312
L P RE E D + +E P + F+I+F +
Sbjct: 183 LELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKI 242
Query: 313 NAVMHKGILNQHQLSDSFFDLLRCQ--PREVIVTALKHIYSYKRPVFDAYEKLKDVQECL 370
N ++ G L+ L SFF L+ + P I AL+ +Y K ++ L +
Sbjct: 243 NTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY 302
Query: 371 IKNPKLNEGPKNID-DIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANV 429
+K P ++D + VRR+ ITP E L+ +++ V
Sbjct: 303 VKKPVAGSPAISLDTGLVYVRRVQITPY----------------------ENLEKIHSTV 340
Query: 430 LSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF 489
+S ++ ++TGV++R+ SIL +G + +++ FLAFSS+QLRD+SAW F
Sbjct: 341 ISPRMS---------KEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMF 391
Query: 490 SKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIK--- 545
+ + +I++WMG+F+ +N+AKYAAR+G FSS+ T+++ E+++ +PDI+
Sbjct: 392 ASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIEN-IPDIEIHK 450
Query: 546 -RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRM 604
R YVFSDGIGKI+P LA VA S PSA+QIRY GYKGVVA P ++
Sbjct: 451 GRTTYVFSDGIGKISPQLAHRVAIKCGCKSS-TPSAFQIRYGGYKGVVAVDPTSSR--KL 507
Query: 605 SLRGSMKKFKSCHTSLEI 622
SLR SM K++S +T+L++
Sbjct: 508 SLRKSMFKYESDNTNLDL 525
>gi|384495057|gb|EIE85548.1| hypothetical protein RO3G_10258 [Rhizopus delemar RA 99-880]
Length = 1125
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 227/850 (26%), Positives = 378/850 (44%), Gaps = 119/850 (14%)
Query: 305 SFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLK 364
+FE+ +++ + IL ++ D+F+ + + L I + +R ++D
Sbjct: 287 TFEVQYMLQHTFNLKILREYNTDDNFYQAISNLEPYIACKLLSLISAGQRRLYDPN---M 343
Query: 365 DVQECLIKNPKLNEGPKNI-DDIAEVRRLVITPTKAYWF-----------LESKDVADRF 412
+ +NP + + P+ I + +R+++ITPT Y + + +DRF
Sbjct: 344 SINNAFKRNPYITDPPEPIPEGYTYLRKVLITPTSVYPLQPILQKMNHLQYQFQRYSDRF 403
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
L + F DE L PI+ N Q ++ R+ +L G L GR Y
Sbjct: 404 LLIQFTDEEL------------GPIIPSPHPN---QNDKLYNRIFKVLKRGLMLSGRYYE 448
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKN-IAKYAARMGLCFSSTHATVE 531
FL S + LRDHS WFF+ E + DI W+G+F + + KY +G + ++E
Sbjct: 449 FLCSSLDDLRDHSCWFFAPTDELNRDDIIYWLGDFQEISCVPKYIQSVGQVMAPRLTSLE 508
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
I P EV+ E+ D + NG ++S GK++P +A E++ +L L + P+ + AG +G+
Sbjct: 509 IKPKEVE-EIDDYEHNGIIYSSECGKMSPQVAREISSLLGLKYT--PNVVKFNLAGARGI 565
Query: 592 VACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIF 651
+ ++ LR F + +LEI ++ + +L+R ITLL+ L + +F
Sbjct: 566 LMLSNYLQKR-KIQLRTGQIHFNTERLTLEINKISKRERAYLDRYSITLLTGLGIHPVVF 624
Query: 652 WTVQASM--------ASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHL 703
+ + K N + D + A C + +L +GF +++P +
Sbjct: 625 QQITEGVLQEYLMGGPQKENFLNHLMDEYYSDHFAKCFNR------VLCSGFLERSDPLI 678
Query: 704 QGM-LTYE---LGELK-ECQCFIQVSESSL----------EN-CFSKHGSRFAETKKLQV 747
+ L ++ L E+K + +IQ + EN F + + +L V
Sbjct: 679 TNLVLAFQNKVLDEIKGNTKIYIQDGARAFAVMDETGSLGENEVFFQTSTSAGLDSELNV 738
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
I G +I +N P DV I++AVD P+L + L++ R N S D
Sbjct: 739 IIGKCLIFRNSSCNPNDVMIVKAVDSPKLRSYTNVLIYSAVSSRHLLNICSHDDA----- 793
Query: 808 YVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDEN 867
DEN P K +K + +++ I +A V ADR + N
Sbjct: 794 ----DENNFTPIKFG--------DVSKFIVKYISEDQTKLIKDAWVASADRHSTSIYHGN 841
Query: 868 CILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGA 927
+ A+ + + KTG V L PDFME + +Y+S K LG ++R +K
Sbjct: 842 ALYFAQQLSIMIAYAKTGISVPTSEELYEYPIPDFMEQDSLMSYQSKKPLGYIHRIVK-T 900
Query: 928 YDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV-NRK 986
++ VS+ + YDT L V G F DAR K YD L L+G+Y + +
Sbjct: 901 IEKRPYVSNRCE-------YDTRLYVEGMHKFILDARKTKMRYDNSLRLLMGEYGICSEI 953
Query: 987 EFRH--IWSMPKYNSRK-QGELQERLKHSYSAFRKEFRQVFEKMNSDFE--------LSD 1035
EF I PKY S + EL +++K +Y F+ E+++ FE FE LS+
Sbjct: 954 EFISGCIVHFPKYTSESDKKELTQKIKMAYIQFKNEWKKYFE-----FEFYKEDVKHLSE 1008
Query: 1036 NEKNVLYEQKASAWYQVTYH----REWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
+E N E KA+AWY VTYH +E+ +K+ ++L + LSF W+ +DY+ I
Sbjct: 1009 DELNCYVEAKAAAWYYVTYHPAENKEY-QKNTEVLSR-------CLSFPWVIDDYIVYIA 1060
Query: 1092 IKCQEMANIG 1101
K E NI
Sbjct: 1061 SKNSERPNIA 1070
>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
Length = 2680
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 219/817 (26%), Positives = 361/817 (44%), Gaps = 145/817 (17%)
Query: 368 ECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR---------FLRVTFM 418
E L +P LN P++I V ++++TP++ + ++R F+ V F
Sbjct: 1087 EGLCTSPSLN--PESI-----VYKVIVTPSRIVYCPPDPAPSNRVFRHWGSENFMYVYFR 1139
Query: 419 DEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL----CGRRYSFL 474
D+ ++ ++ ++ + +R++++L +G + G ++ FL
Sbjct: 1140 DDNMERLDFRSVT--------------------ILERIRNVLKNGIEIPHVSGGLKFRFL 1179
Query: 475 AFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIP 533
S +Q+R+ SA F+++ +V + W+G+ + + AKY R+G FSST T E+
Sbjct: 1180 GCSLSQVRNSSA-IFTRLDHHAV---RLWIGDLSLLTSPAKYLKRLGQAFSSTKDTFEVS 1235
Query: 534 PTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVA 593
+ +D+ + DI+ + YVF+DG G+I A + + L+L S PSA+Q+R G KGV+
Sbjct: 1236 RSVLDNPVDDIENDQYVFTDGCGEIGLVGAESIVRELQL--SYTPSAFQVRLGGAKGVLV 1293
Query: 594 CWPAKDDGIR----MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
+ I + LR SM KF S HT LEI + +L RQ + +L+ L ++++
Sbjct: 1294 VSDLGNPDISREEAVVLRKSMSKFSSNHTMLEIVACAGKSEAYLTRQSVLILNDLGINED 1353
Query: 650 IFWTVQASMASKLNLMLVASDVAF---------------EVLT----------------A 678
+F +Q S L ++ + A+ +VL A
Sbjct: 1354 VFMEMQEEFLSDLRSLIASDSGAYFGLKAVLPPSVIWRIDVLVRKLEVKILVDEYLSSLA 1413
Query: 679 SCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSR 738
A ++ A L G+ + G L+ + F+Q S++ E +
Sbjct: 1414 RTIYHYRLANTVMRARIPIAKGRTLMGVADFT-GTLEYGEVFVQYSDTDEETGNDSY--- 1469
Query: 739 FAETKKLQVINGF-VVIAKNPCLRPGDVRILEAVDR--PELHHLCDCLVFPQKGDRPHTN 795
+++G V + ++PC PGD+R+L P+L L DC+VFP KG RPH +
Sbjct: 1470 -------VLLDGIDVAVHRSPCHHPGDIRVLRCRTDVPPQLRQLKDCIVFPSKGPRPHPD 1522
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPM---ECTPAEAKPLTCHVNHQN-------- 844
E +G DLDGD++ V WDE LIP + PM E + P HQ+
Sbjct: 1523 ECTGGDLDGDMFVVIWDERLIPSRTQVHEPMAFDEDNGGDTSP-RGEEYHQSTDDAGLID 1581
Query: 845 ----------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
LG NAH+ D S G+ D+N +LA++ + VDS + K + + +L
Sbjct: 1582 FYIHSIQDDILGIASNAHLALCDSSNDGSLDDNAKILARICSKQVDSLRAEKDLEIVRNL 1641
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVP 954
PK YPDFM+ +E +Y S KILG++YR+ K +D ++ S V P+ D V
Sbjct: 1642 APKSYPDFMQNKEKPSYPSKKILGKMYRRCKAIFDTTMTKS--VSRMPI---RDDHFLVA 1696
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGE---LQERLKH 1011
G D+ A Y +L LL + + + S + + E+ K
Sbjct: 1697 GYTDYVEQANLLYRQYKLRLRALLLMSGAQTEAELATGMIVEPQSEYKADYFRFGEQCKD 1756
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSA 1071
++ A + FR F+ S F +N K ASA Y VT+ S
Sbjct: 1757 AFYALQAGFRSQFDSDTSTFAAGENLK------LASACYFVTH-------------DDSD 1797
Query: 1072 RSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNN 1108
+ LSF WI D L IK + + KPV +
Sbjct: 1798 ATTRCLSFPWIVIDLLTTIKTSNASKTHYKEWKPVRS 1834
>gi|324500457|gb|ADY40216.1| RNA-dependent RNA polymerase RRF-3 [Ascaris suum]
gi|333440982|gb|AEF32766.1| RdRP3 [Ascaris suum]
Length = 1640
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 270/1009 (26%), Positives = 449/1009 (44%), Gaps = 194/1009 (19%)
Query: 219 LASSPRICYRTAKDDI--EVLVPFDLLDDDDPWIRTTDFS---PSGAIGQCNSKQRVQED 273
LA SP + + K+ I E + P ++++ W R F+ P+ + + ++ + +
Sbjct: 380 LAGSPWLAFSIPKESIQPEQMFPNEIVE----WARRPRFAKMAPTWMVFEIIARWKRRAK 435
Query: 274 CLSQPVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDS---- 329
C + P E P+E+ E SF + + + A++ +G + QL D
Sbjct: 436 CQISFAAVMRVPRREPPIEN------VPELPSFRLNYAMEALIGRGSVVTDQLFDHDDSS 489
Query: 330 ----FFDLLRCQPREVIVT-------ALKHI-------------YSYKRPVFDAYEKLKD 365
FF L +E ++ AL I Y+Y + V +A +L +
Sbjct: 490 HNSLFFRRLIFASKECLLACEESLDGALAAIDERRRISLFTFFEYTYAQKV-NALRRLVN 548
Query: 366 VQECLIKNPKLNEGPKNIDDIAEVR----RLVITPTKAYWFLESKDVADRF-----LRVT 416
+E N+ P N I +V RL++ P + + + V F LR
Sbjct: 549 DEEV----GAFNDLPPNCVLIRKVMATPLRLILMPPEV---MMTNRVVRHFGEEYALRCV 601
Query: 417 FMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVF--KRVKSILSDGFNLCGRRYSFL 474
F D+ Q + +V D T Q+ + + V LS+G ++ R Y FL
Sbjct: 602 FRDDNGQRL-----------VVNDFTRGRAVQEQSLIIQRLVYKTLSEGIHIASRHYKFL 650
Query: 475 AFSSNQLRDHSAWFFSKV-------GETSVL---DIKNWMGEFTA-KNIAKYAARMGLCF 523
A+S++Q+RDH + +S G+ + DI+ WMG+FTA KN+ K +RMG CF
Sbjct: 651 AWSNSQMRDHGCYMYSATKVIDDVSGKERIYEIEDIRRWMGDFTASKNVPKLMSRMGQCF 710
Query: 524 SSTHATVEIPPTEVDHE------LPDIKRNG-YVFSDGIGKITPDLAMEVAQILKLDGSP 576
+ T+ + + E LP + + FSDG G+I+ A VA KLD P
Sbjct: 711 TQAQPTIVLERKDWRMEEDIVGGLPHPETGELFNFSDGAGRISAKYASLVAA--KLDLRP 768
Query: 577 PPSAYQIRYAGYKGVVACWPAKD--DGIRMSLRGSMKKFK---SCHTSLEICSWTRFQPG 631
PPS +Q+R+ G+KGV+ P+ D + + R S KKF+ S LE+ + P
Sbjct: 769 PPSCFQVRFKGFKGVLCVDPSLDLENKENVVFRRSQKKFEEDESEAAELEVVKHS--MPS 826
Query: 632 F--LNRQIITLLSTLN------VSDEIFWTVQASMASKLNL---MLVASDVAFEVLTASC 680
F L+R +I +L ++ + + W + + +LN ML+ +VA E L++
Sbjct: 827 FVCLSRPLIMILDQVSERQNRELHQRLCWRIHCLLEKELNTLAEMLLDEEVAAEALSSRL 886
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLT----YELGE-LKECQCFIQVSESSL------E 729
+ + + +GF EP + +L Y + + L + + F+ S +
Sbjct: 887 SLSIDFRQLH-DSGFTFTNEPFFRSLLVAVHHYNIKQHLSKLKIFLPGSMGRTMYGVIDD 945
Query: 730 NCFSKHGSRFAE--------TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD 781
++G F + +KK+ G V++ KNPCL GDVR+ AV + L HL D
Sbjct: 946 TGVLQYGQVFVQYSPSVRTPSKKVITHVGPVLVTKNPCLVGGDVRMFTAVYQSSLSHLRD 1005
Query: 782 CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSC----PPMEC---TPAEAK 834
+VFP+ G RPHT+E +GSDLDGD Y V +D++L + P+ TP A+
Sbjct: 1006 VIVFPRYGPRPHTDEMAGSDLDGDEYIVIFDKDLFLDHNEEAMHFPKPVASDYDTPPTAE 1065
Query: 835 PLT----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVT- 889
+ +++ ++G++ NAH++ +DR G F E C +A+ + AVD PK+G+
Sbjct: 1066 DMIDFFLKYLSQDSIGRMSNAHLIMSDR--LGLFHEICDGIARKCSIAVDFPKSGEPAEP 1123
Query: 890 MPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDT 949
+ S + PDFM+ +Y+S++++GRLYR++K ENI ++ + P +D
Sbjct: 1124 LSSFEQSDIVPDFMQKSFRPSYRSHRLVGRLYRKVKKV--ENIVELAQ--MIPFTDTFDP 1179
Query: 950 DL-------EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---------FRHIWS 993
L P V + RNQ Y+ ++ L+ +Y + + R I
Sbjct: 1180 QLYDESLFDTHPCLVRNSIHLRNQ---YNAKVQQLMDEYGITDEASVVSGHSVTIRRITD 1236
Query: 994 MPK-----YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSD--NEKNVLYEQ-- 1044
M K Y+S + E+ R Y +FR+EF F + SDF D ++ + +
Sbjct: 1237 MEKDDYSYYHSDRIVEM--RYSRIYESFRREFFMEFGE-ESDFITVDAFGQRGIRWNSAL 1293
Query: 1045 --KASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
KA WY V Y + + S SF WI D L +K
Sbjct: 1294 ITKAKVWYAVCYGKRAMCPS------------KFRSFPWIVWDLLLIVK 1330
>gi|341880571|gb|EGT36506.1| hypothetical protein CAEBREN_02888 [Caenorhabditis brenneri]
Length = 1640
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 252/929 (27%), Positives = 390/929 (41%), Gaps = 230/929 (24%)
Query: 356 VFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAE---------VRRLVITPTKAYWF---- 402
+ D +++ + +CL K + E + I+ ++E VR++V TPT+ +
Sbjct: 446 LIDGRKRIGCITKCLDKICQKRERMQLINGLSEKEIHDGFQIVRKVVFTPTRVIYVAPEA 505
Query: 403 LESKDVADRF-------LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKR 455
+ V RF LR+TF D+ M N T+ +KT
Sbjct: 506 IMGNRVLRRFDKDGTKVLRITFRDDNNSKMRTN-------------TTEELLEKTA---- 548
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVG---------------ETSVLDI 500
+G + R + FL S++Q+RD A+F K +L
Sbjct: 549 -NKFFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPGQLERFYRKYPRHTREQLLSY 607
Query: 501 KNW-------MGEFT-AKNIAKYAARMGLCFSSTHAT-VEIPPTE----VDHEL-PDIKR 546
K W +G+F+ +N+ K ARMG CF+ + T V + D+E + K+
Sbjct: 608 KPWIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVALERKNYCKIFDYEGGKNSKK 667
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD------ 600
Y FSDG+G ++ A +AQ + D S P S +QIR+ G KGV+A P DD
Sbjct: 668 AAYTFSDGVGMMSCRFAKIMAQSMNYDRSVP-SCFQIRFRGNKGVIAMEPQLDDLRNWSI 726
Query: 601 ---------GIRMSLRGSMKKFKSCHT---SLEICSWTRFQPGFLNRQIITLLSTLNVSD 648
I+++ R S KF++ H +E+ P LN+ +I +L VS+
Sbjct: 727 RHQLDDLIPEIKVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPVSLNKPLINILD--QVSE 784
Query: 649 EIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA-----------------IML 691
M S++ ++ + S A+Q N +
Sbjct: 785 MQGVLCHKRMVSRIEELM-------DRQVQSFAKQMNDETYCRNRLKEFPRRVDIDYLRT 837
Query: 692 SAGFKPQTEPHLQGMLTY------------------------------ELGELKECQCFI 721
+ GF EP + ++ E G L+ Q F+
Sbjct: 838 TWGFTLSREPFFRSLIKAAIKFSITKQLRKEQIPIPKELGRTLFGVVDETGRLQYGQVFV 897
Query: 722 QVSESSLENCFSKHGSRFAE--TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
Q S N +KH R A+ + V+ G ++I+KNPC+ PGDVRI EAVD PELHH+
Sbjct: 898 QYSS----NILNKHPVRLADQSVQNGVVVTGPILISKNPCIVPGDVRIFEAVDIPELHHM 953
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI-----PPSKKSCPP--MECTPAE 832
CD +VFPQ G RPH +E +GSDLDGD Y V WD ++ P S +E P E
Sbjct: 954 CDVVVFPQSGPRPHPDEMAGSDLDGDEYSVIWDPQMLLEWNEPAFDFSVEKQRIEWDPNE 1013
Query: 833 AKPL-----TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
L ++ ++GQI NAH+ ++D +YG C+ LAK + AVD K+G
Sbjct: 1014 VDNLMREFYVQYLKLDSVGQISNAHLHNSD--QYGLMSTVCMNLAKKNSQAVDFTKSG-- 1069
Query: 888 VTMPSHL-----------------KPKKYPDF-MEIEEYQTYKSNKILGRLYRQIKGAYD 929
P+ + P++ PDF M E Y S ++ GRL+R+ + A D
Sbjct: 1070 -IPPAEMTRDWRRDPITDEMVPPENPERIPDFHMGNERNPQYVSPRLCGRLFREFQ-AID 1127
Query: 930 ENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV------ 983
I +S E D DI D D+ + G F +AR + +Y+GQL ++ Y +
Sbjct: 1128 NVIKISEEKD-ELYDIEIDEDIMIYGYERFMVEARTELANYNGQLRSIMETYGIATEGEI 1186
Query: 984 ---------NRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELS 1034
NR + M +N+ ++ R+ FR++F + F S +
Sbjct: 1187 MSGCIIEMRNRISDKDQDDMSFFNTNLM--IETRVTTLICRFREKFFEQFGGYQSCCSII 1244
Query: 1035 DN--EKN---VLYE---------QKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFA 1080
+N E N + Y QKA AWY+ Y E+ + S R LSFA
Sbjct: 1245 ENADENNSSCLAYRCRSATNSMMQKAVAWYRACY--EFAQ---------SNRETRKLSFA 1293
Query: 1081 WIANDYLARIK---IKCQEMANIGKSKPV 1106
WI D +A+++ + QE IG + P+
Sbjct: 1294 WIVYDVIAKVREAAMLSQENLQIGGANPM 1322
>gi|324500541|gb|ADY40252.1| RNA-dependent RNA polymerase EGO-1 [Ascaris suum]
gi|333440978|gb|AEF32764.1| RdRP1 [Ascaris suum]
Length = 1644
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 261/1029 (25%), Positives = 455/1029 (44%), Gaps = 205/1029 (19%)
Query: 236 VLVPFDLLDDDDPWIRTTDFSPSGA--IGQCNSKQRVQEDCLSQPVTIREEPDFEVPVED 293
+ +PF+ + + TD+ P +G C+ + E +Q + P +E P
Sbjct: 374 IALPFEFTNIALVRFKMTDYVPMPVSFVG-CDHRACAGEQTPTQNSGDSKMPSYEPPF-- 430
Query: 294 PFF---CMHYKEGVS---FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR-EVIVTAL 346
P F C YK+ V F + +L+ A+M +G + + Q+ L+ + R E + +
Sbjct: 431 PRFDPEC--YKKIVDCGVFGLEYLIAALMTRGAIVKDQI------LVSAKKRNEFVDLIV 482
Query: 347 KHIYSYKRPVFDAYEKLKDVQE-------CLIKNPKLNEGPKNIDDIAE----------- 388
+ + K ++ E+L +V + LI K+ + D+ E
Sbjct: 483 RRFHENKELTLESLERLLNVVDETKQTPSLLISFEKIRNALLSQKDVLEEIYRESKRDGY 542
Query: 389 --VRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
VR++VITPT+ + + + +R LR F +G ++ + + ++ T F
Sbjct: 543 QRVRKVVITPTRMLFVVPELLMGNRVLR-NFDKDGNGSLRVQFRDDDSSQLRRN-TVGPF 600
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE 506
++ VF + L+ G ++ R + +L S++QLRD+ +FF I+ +G+
Sbjct: 601 LIQSTVF----NTLTRGIHIGSRHFVYLGSSNSQLRDNGCYFFDDGKGGHAQWIRTQLGK 656
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI------KRNGYVFSDGIGKITP 560
F NI K +RMG CF+ + ++ D+ + Y+FSDG+G+++
Sbjct: 657 FDRGNIPKMMSRMGQCFTQAKQCAVVLKRHKYNKTWDVIGGRDSRGEPYIFSDGVGRLSQ 716
Query: 561 DLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD--------GIR--------- 603
+ A ++A+ + L + PS +QIR+ G KGV++ P DD GI+
Sbjct: 717 EFAEKIAKDINL-ANAVPSCFQIRHRGMKGVLSVDPLLDDRKQWAIAHGIKDGSMATSRI 775
Query: 604 ----MSLRGSMKKFKSCH-TSLEICSWTRFQPGFLNRQIITLLSTLNV--SDEIFWTVQA 656
+ R S KFK+ ++EI ++ LNR +I++L ++ + TV
Sbjct: 776 NDLAVVFRPSQDKFKAPRDEAIEIVKYSSPTCVSLNRPMISILDQVSSMQGHTVHMTVTE 835
Query: 657 SMASKLNLMLVASDVAFEVLTASCAEQ-------GNTAAIMLSAGFKPQTEPHLQGMLTY 709
+ L++ L+ F + C ++ N + L GF EP + +L
Sbjct: 836 RIHELLDMQLMELAEIF-LDEDRCRDKLNELPRLMNVDRLSLVRGFALTQEPFFRSLLRA 894
Query: 710 ------------------------------ELGELKECQCFIQVSESSLENCFSKHGS-R 738
E G+L+ Q F+Q + N + K+ R
Sbjct: 895 SVRYTLKKQLAKEQILIPSHLGRSMFGVMDETGQLQSGQIFVQYTN----NVWLKNPPPR 950
Query: 739 FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS 798
A+T ++ G V++ KNPC+ GDVR+LEAVD PELHHL D +VFPQ G RPH +E +
Sbjct: 951 AAKT----ILKGPVLMTKNPCIVAGDVRLLEAVDIPELHHLVDVVVFPQYGPRPHPDEMA 1006
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP---------------LTCHVNHQ 843
GSDLDGD Y V WD+ L+ ++ P++ T K ++
Sbjct: 1007 GSDLDGDEYSVIWDKKLMFIRNEN--PLDFTKRMRKYEEVGTDKVDLEMRKFFVNYIKQD 1064
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG-------KIVTM---PSH 893
++G I NA +V+AD YG E C +AK + AVD PKTG ++ T+ S
Sbjct: 1065 SIGSIANAFLVNADL--YGITSEICENIAKKHSQAVDFPKTGDAPEPLTRVWTIGKDGSF 1122
Query: 894 LKP---KKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTD 950
+ P +++PDFM +Y S +++G+LYR+I+ D+ ++++S +D ++ D
Sbjct: 1123 VPPERSERWPDFMCKNHEPSYISPRLVGQLYRRIR-LVDDVLTLTSALD-EVTELELDPM 1180
Query: 951 LEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV---------------NRKEFRHIWSMP 995
L+ PG + +AR Q SY+ + +L Y + NR R + M
Sbjct: 1181 LQYPGWEKYAENARLQLDSYNAHIRAILDNYGIQDEGQLLSGCISVIRNRISDRDVDDMS 1240
Query: 996 KYNSRKQGELQERLKHSYSAFRKEFRQVF---------EKMNSDFELSDNEKNVLYEQ-- 1044
+N+ +++++ + FR F + F ++ + + D+E+ V
Sbjct: 1241 FFNTNHV--IEKKVASIFRMFRHAFFREFGGYERCTEVDREGATSDNGDDERRVCLNPTY 1298
Query: 1045 ----KASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANI 1100
KASA+Y V Y ++ + + LLSF W+A D L+ +K QEM
Sbjct: 1299 SMRCKASAYYVVCY------------QEAAESTRRLLSFGWLAWDVLSHVK---QEMRMA 1343
Query: 1101 GKSKPVNNL 1109
+ V +L
Sbjct: 1344 SGQRLVQSL 1352
>gi|226291786|gb|EEH47214.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 1257
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 241/845 (28%), Positives = 357/845 (42%), Gaps = 186/845 (22%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFD-LLRCQPREVIVTALKHIYSYKRPVFDAYEK 362
+ F + + + + LN++ + F D L R R+ I L ++YS K +D +
Sbjct: 321 LEFAVRYYLEVCISYRYLNEYAIKKKFVDELARIGERKAIYL-LGYVYSNKIAYYDPMDI 379
Query: 363 LKDVQECLIKNPKLNEGPKNIDDIAE---VRRLVITPTKAYW-----------FLESKDV 408
I+ P ++ N +R +TP+ Y+ F +
Sbjct: 380 FN------IRVPNFSDRANNTRTPVGYYYMRSAEVTPSTIYYKPPSIDTGNRIFRRYLEY 433
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
ADRFLRV F DE + M + Y A IV V+ RV + +G +
Sbjct: 434 ADRFLRVRFTDE--KNM-GKIFPYSNANIV---------CMNEVYTRVTLTMKNGITIGD 481
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHA 528
R Y FLAFS+ QLR+H+A+FF+ + TA NI +
Sbjct: 482 RCYEFLAFSNAQLREHAAYFFAS------------LPHLTAANILQIV------------ 517
Query: 529 TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLDGSPPPSAYQIRY 585
E+ DI+RNGY FSDG+G I+ LA + I L G PP S +Q R
Sbjct: 518 -----------EIDDIERNGYTFSDGVGLISKFLAQMIQSEFAIETLSGEPP-SVFQFRL 565
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLN 645
G C K+ H LEI + F LNRQ+I +LS+L
Sbjct: 566 GG------C-------------------KAPHNGLEIIRHSSFCFASLNRQLIIVLSSLG 600
Query: 646 VSDEIFWTVQASMASKLNLMLVASDVAFEVL---------TASCAEQGNTAAIMLSA--- 693
+ DE+F +M L L + + + A ++L T A+ G A +L
Sbjct: 601 IPDEMFVKKLQAMLENLELAMTSQEQAIDLLQTYVDPNQMTLVLADMG---AFLLGCLDE 657
Query: 694 -----GFKPQTEPHLQGMLTYELGELKEC--QCFIQVSESSLENCFSKHGSRFAETKKLQ 746
G+ P G TYE + +C + F+Q+S S E + +
Sbjct: 658 TGSLKGYFRSKRP--GGGATYE--QKLDCLPEIFVQISRHS-EGTY-------------E 699
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
VI G ++A+NP L PGD+R+++AVD P LHHL D +V PQ GDR + SG DLDGD
Sbjct: 700 VIEGLCILARNPSLHPGDIRVVKAVDIPGLHHLKDVVVLPQTGDRDIASMCSGGDLDGDD 759
Query: 807 YYVTWDENLIP------PSKKSCPPMECTPAEA------KPLTCHVNHQNLGQICNAHVV 854
Y V WD++L+P P S P + + K ++ + L QI AH+
Sbjct: 760 YVVIWDQDLLPKDWFEEPMDYSAPKSKVLDRDVTVDDIIKFFVSYMQNDRLPQIALAHLT 819
Query: 855 HADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME----IEEYQT 910
AD S+ G DE C+ LA L + AVD K+G V M L+PKK+P FME +++ Q
Sbjct: 820 IADYSDDGVQDEKCLRLATLHSAAVDYNKSGIPVRMNQDLRPKKWPHFMERKFAMKDSQ- 878
Query: 911 YKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDTDLEVPGSVDFTADARNQKCS 969
Y S KILG+LY G Y N+ S P D + + E+ + A+ K
Sbjct: 879 YTSRKILGQLYDIAGGVY-LNLQSHSAKGRLPFDQRILNANFEI--DEKLLSFAKELKGE 935
Query: 970 YDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQV-FEKMN 1028
YD L ++ Q+ + ++++ E + SA R++FR + EK
Sbjct: 936 YDADLRRIMAQHEIQSEDYK---------------FHEEIGRISSALRQKFRMLCHEKAG 980
Query: 1029 S-DFELSDNEKNVLYEQKASAWYQVTYHREWVKKSL--DLLEQGSARSVVLLSFAWIAND 1085
DF+ A A Y+VT + K+ G + L+SF W+
Sbjct: 981 GKDFK--------SLAPLAIAMYRVTSEQMEKAKAAAHSHCTPGEEERMPLISFPWVLQP 1032
Query: 1086 YLARI 1090
L I
Sbjct: 1033 ILGMI 1037
>gi|170582151|ref|XP_001896001.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158596891|gb|EDP35156.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1475
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 246/953 (25%), Positives = 412/953 (43%), Gaps = 204/953 (21%)
Query: 302 EGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYE 361
+ +SF + +L+ A++ +G + + QL L+ + E ++ + + + P+ A+E
Sbjct: 390 KSLSFALEYLIAALLSRGAVVKDQL------LMTLEVLERLINMIDEMKNIP-PLISAFE 442
Query: 362 KLKDVQECLIKNPKLNE--GPKNIDDIAEVRRLVITPTKAYWFL-----------ESKDV 408
++++ +K L E G + VR+ VITPT+ + E +
Sbjct: 443 RIQN--SIFVKKELLAEIHGRSADEGFQRVRKAVITPTRMLLVIPELLMGNRVLREFDES 500
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
D LR+ F D+ + + Y I++ NS L G +
Sbjct: 501 GDDALRIQFRDDDGAHLRRSRAGLY---IIETTVHNS--------------LLRGVYISD 543
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSS--- 525
R + +LA S++Q+RD+ +FF+ + V I++ +G+F NI K +RMG CF+
Sbjct: 544 RHFVYLASSNSQMRDNGCYFFNDGDDGKVKMIRDKLGKFDHTNIPKLMSRMGQCFTQSKE 603
Query: 526 THATVEIPPTEVDHEL---PDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
T T++ H++ D ++FSDG+GK++ D A ++A L L PS +Q
Sbjct: 604 TDVTLKRRKYNKTHDVIGGKDSCGEPFIFSDGVGKLSEDFAEQIANDLGL-AKCVPSCFQ 662
Query: 583 IRYAGYKGVVACWPA---------------------KDDGIRMSLRGSMKKFKSCHTSL- 620
RY G KGV++ PA K + + + R S KF + +
Sbjct: 663 FRYRGLKGVLSVDPALRQRRLWAERNGLEDKHAKTAKVNDLDIIFRPSQDKFHAPRKEII 722
Query: 621 EICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS-----------KLNLMLVAS 669
EI ++ +LNR +I +L VSD + V + + + KL+ L++
Sbjct: 723 EIVKYSSPTSVYLNRPLINILD--QVSDMQGFDVHSRIVNRIHGLLDRQLLKLSDALMSE 780
Query: 670 DVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------------------- 709
D E L A + N + ++ GF EP G+L
Sbjct: 781 DRCRERL-AEFPRRINVQYLSVARGFTLTQEPFFHGLLIASVRFTLQKQLSKEHIQIPAN 839
Query: 710 ----------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPC 759
E G L+ Q F+Q + K ++ ++ GFV+I KNP
Sbjct: 840 LGRTMFGILDETGLLQYGQVFVQFTNDVFLKTPPKAAAK-------TIVKGFVLITKNPS 892
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP- 818
+ GDVRI EAVD PEL HL D +VFPQ G RPHT+E +GSDLDGD Y V WD+ ++
Sbjct: 893 IVAGDVRIFEAVDLPELRHLVDVVVFPQHGPRPHTDEMAGSDLDGDEYSVIWDDQMLFSH 952
Query: 819 -------SKKSCPP-----MECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDE 866
SK PP E + +V ++G I NA +V++D +G +
Sbjct: 953 NEEPMDFSKLIRPPDILKEDEVVREMRRFYVEYVMQDSIGIIANAFLVNSD--TFGIASD 1010
Query: 867 NCILLAKLAATAVDSPKTGK----IV---------TMPSHLKPKKYPDFMEIEEYQTYKS 913
C+ +A+ + +VD PKTG+ +V M +P+++PDFM +Y S
Sbjct: 1011 VCMSIAEKHSQSVDFPKTGQPPKPLVKEWSNGPDGKMIPPERPERWPDFMCKTHEPSYVS 1070
Query: 914 NKILGRLYRQIKGAYDENISVS------SEVDINPVDIHYDTDLEVPGSVDFTADARNQK 967
+++G+L+R+I+ D+ ++++ S+V ++P+ LE G + DA
Sbjct: 1071 TRLVGQLFRRIR-LIDDVLTITRAHETQSKVTVDPL-------LEYSGWESYENDATLNL 1122
Query: 968 CSYDGQLNGLLGQYNV---------------NRKEFRHIWSMPKYNSRKQGELQERLKHS 1012
+Y + L+ Y + NR R M ++N+ ++ +L +
Sbjct: 1123 IAYSAHIRALMDNYGIEDECQLYSGCFCKVRNRISDRDGDDMSQFNT--SFIIERKLTNI 1180
Query: 1013 YSAFRKEFRQVFEKMNSDFELSDNEKN-------------VLYEQKASAWYQVTYHREWV 1059
+ FR F F S + D+ +N V ++KASA+Y V Y +
Sbjct: 1181 FMCFRCNFFAEFGDFMSCTQQDDDLRNKDVIERRYCKYPTVEMKKKASAYYIVCYRK--- 1237
Query: 1060 KKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMA--NIGKSKPVNNLA 1110
++++ R LLSF WI D LA IK + + NI P+ LA
Sbjct: 1238 -----VMKEKGER---LLSFPWIVWDILADIKKENAVLTSQNISTIDPLCELA 1282
>gi|299470095|emb|CBN78124.1| RNA-dependent RNA polymerase 1 [Ectocarpus siliculosus]
Length = 1102
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 238/835 (28%), Positives = 351/835 (42%), Gaps = 200/835 (23%)
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPI---VKDITSNSFSQKTGVFKRVKSILSDGFN 465
+DRFL V F+DE + + LS +AP + F Q+ F +V L
Sbjct: 295 SDRFLGVNFVDENMGRLQ---LSPLLAPSDCWSIGLACTPFGQRHQTFLKVHPAL---LV 348
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD-------IKNWMGEFTAKNI-AKYAA 517
C + +QLR H+ +F+++ GE + + +WMG+ + ++ K+AA
Sbjct: 349 SCVVLSPPVRPRKSQLRGHACFFYAEGGEVDQISESGSEPAVFHWMGDMSGIDVVGKHAA 408
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS-P 576
R+G SST +TVE+PP + +PD K Y F+DG G ++ LA EVA +L S P
Sbjct: 409 RLGQSLSSTTSTVEVPPA-LKKLVPDKKAGPYEFTDGCGMMSEGLAREVADVLGHSVSQP 467
Query: 577 PPSAYQIRYAGYKGVVACWP-------AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ 629
PPSA+QIR G KG++A WP + G ++ +R SM+KF S +LE+ + R
Sbjct: 468 PPSAFQIRMGGCKGMLAVWPDSVMRSVSGRGGYKVLVRPSMQKFPSERNTLEVIQYARQL 527
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML--VASDVAFEVLT-------ASC 680
P +LNRQ ITLL TL V D++ ++M S L+ +L + SD A + S
Sbjct: 528 PCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSG 587
Query: 681 AEQGNT-------AAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFS 733
+ G A M+ AG +TEP LQ +L + I +
Sbjct: 588 GKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVL-----HATRDKAMIDL---------- 632
Query: 734 KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVD----RPELHHLCDCLVFPQKG 789
+H +R ++ ++ + L+PG +A D R H+ +
Sbjct: 633 RHRTRIFVPDASCLLG---IVDETGFLQPG-----QASDSLGCRSVNHYTANRASIMTNA 684
Query: 790 DR-----PHTNEASGSDLDGDLYYVTWDENLIPPSKKSC-------------PPMECTPA 831
DR P ++ SG DLDGDLY V WD++L+PP ++ P M P
Sbjct: 685 DRFGQCTPEPSKMSGGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPP 744
Query: 832 EAKPLTC-------------------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLA 872
E KP T ++ + NLG+I NAH+V AD S GA + C+ LA
Sbjct: 745 E-KPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKIANAHLVRADLSPLGARCDECLQLA 803
Query: 873 KLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENI 932
L + AVD PK+G P LK YPDFM E+ TY S K++GRL+R A N
Sbjct: 804 ALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDNMTYLSKKLIGRLFRDTPPAGAANP 863
Query: 933 SVSSEVDINPV-DIHYDTDLEVPGSVDFTADARNQKCSYDG------QLNGLLGQYNVNR 985
+ D + D L PG DF +A ++ + G +L G+ N+
Sbjct: 864 QRRQQQDERFLGGFELDQSLLAPGYEDFLEEAEVER--FGGRMLKRTKLEDAQGRLNL-- 919
Query: 986 KEFRHIWSMPKYNSRKQGE----------LQERLKHSYSAFRKEFR-------------- 1021
EF ++ MP + G L+E++K + FR EFR
Sbjct: 920 -EFLRMF-MPMHARALDGRGSVWVLPRAYLREQIK---AKFRAEFRGHNHDSDSDSDSDS 974
Query: 1022 ------------------------------------QVFEKMNSDFELSDNEKNVLYEQK 1045
E SD+ +D V QK
Sbjct: 975 NYDSEEGSEEFSEEHPADQGSKERPGEEEVDEGKEEARVEGKGSDYHPADAPDGVEVYQK 1034
Query: 1046 ASAWYQVTY-----------HREWVKKS------LDLLEQGSARSVVLLSFAWIA 1083
ASAWY V++ EW KK+ A ++ LSFAWI+
Sbjct: 1035 ASAWYFVSHSESTNPYMREAREEWRKKTRRGGGGGSGGHGAEAPLMLYLSFAWIS 1089
>gi|341891713|gb|EGT47648.1| hypothetical protein CAEBREN_06166 [Caenorhabditis brenneri]
Length = 1640
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 250/926 (26%), Positives = 390/926 (42%), Gaps = 224/926 (24%)
Query: 356 VFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAE---------VRRLVITPTKAYWF---- 402
+ D +++ + +CL K + E + I+ ++E VR++V TPT+ +
Sbjct: 446 LIDGRKRIGCIMKCLDKICQKRERMQLINGLSEKEIHDGFQIVRKVVFTPTRVIYVAPEA 505
Query: 403 LESKDVADRF-------LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKR 455
+ V RF LR+TF D+ M N T+ +KT
Sbjct: 506 IMGNRVLRRFDKDGTKVLRITFRDDNNGKMRTN-------------TTEELLEKTA---- 548
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS------------------- 496
+G + R + FL S++Q+RD A+F K +
Sbjct: 549 -NKFFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPSQLERFYRKNPRATREQLLNY 607
Query: 497 ---VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT-VEIPPTE----VDHEL-PDIKR 546
+ +++ +G+F+ +N+ K ARMG CF+ + T V + D+E + K+
Sbjct: 608 KPLIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVALERKNYCKIFDYEGGKNSKQ 667
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD------ 600
Y FSDG+G ++ A +AQ + D S P S +QIR+ G KGV+A P DD
Sbjct: 668 ATYTFSDGVGMMSCRFAKIMAQSMNYDRSVP-SCFQIRFRGNKGVIAMEPQLDDLRNWAI 726
Query: 601 ---------GIRMSLRGSMKKFKSCHT---SLEICSWTRFQPGFLNRQIITLLSTLNVSD 648
I ++ R S KF++ H +E+ P LN+ +I +L VS+
Sbjct: 727 RHALEEIIPEINVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPVSLNKPLINILD--QVSE 784
Query: 649 EIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA-----------------IML 691
M S++ ++ + S A+Q N +
Sbjct: 785 MQGVVCHKRMVSRIEELM-------DRQVQSFAKQMNDETYCRNRLKEFPRRVDIDYLRT 837
Query: 692 SAGFKPQTEPHLQGMLTY------------------------------ELGELKECQCFI 721
+ GF EP + ++ E G L+ Q F+
Sbjct: 838 TWGFTLSREPFFRSLIKAAIKFSITKQLRKEQIQIPKELGRTLFGVVDETGRLQYGQVFV 897
Query: 722 QVSESSLENCFSKHGSRFAE--TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
Q S N +KH R A+ + V+ G ++I+KNPC+ PGDVRI EAVD PELHH+
Sbjct: 898 QYSS----NILNKHPVRLADQSVQNGVVVTGKILISKNPCIVPGDVRIFEAVDIPELHHM 953
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI-----PPSKKSCPP--MECTPAE 832
CD +VFPQ G RPH +E +GSDLDGD Y V WD ++ P S +E P E
Sbjct: 954 CDVVVFPQAGPRPHPDEMAGSDLDGDEYSVIWDPQMLLEWNEPAFDFSVEKQRIEWDPNE 1013
Query: 833 AKPL-----TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG-- 885
L ++ ++GQI NAH+ ++D +YG C+ LAK + AVD K+G
Sbjct: 1014 VDNLMREFYVQYLKLDSVGQISNAHLHNSD--QYGLMSTVCMNLAKKNSQAVDFTKSGIP 1071
Query: 886 ----------KIVT--MPSHLKPKKYPDF-MEIEEYQTYKSNKILGRLYRQIKGAYDENI 932
+T M P++ PDF M E Y S ++ GRL+R+ + A D I
Sbjct: 1072 PADMTRKWEKDPITDEMVPPENPERIPDFHMGNERNPQYVSPRLCGRLFREFQ-AIDNVI 1130
Query: 933 SVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV--------- 983
+S E D DI D D+ + G F +AR + +Y+GQL ++ Y +
Sbjct: 1131 KISEEKD-ELYDIEIDEDIMIYGYERFMVEARTELANYNGQLRSIMETYGIATEGEIMSG 1189
Query: 984 ------NRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDN- 1036
NR + M +N+ ++ R+ FR++F + F S + +N
Sbjct: 1190 CIIEMRNRISDKDQDDMSFFNTNLM--IETRVTTLICRFREKFFEPFGGYQSCCSIIENA 1247
Query: 1037 -EKN---VLYE---------QKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIA 1083
E N + Y QKA AWY+ Y E+ + S R LSFAWI
Sbjct: 1248 DENNSTCLAYRCRSATNSMMQKAVAWYRACY--EFAQ---------SNRETRKLSFAWIV 1296
Query: 1084 NDYLARIK---IKCQEMANIGKSKPV 1106
D +A+++ + QE IG + P+
Sbjct: 1297 YDVIAKVREAAMLSQENLQIGGANPM 1322
>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
Length = 2706
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 238/890 (26%), Positives = 382/890 (42%), Gaps = 163/890 (18%)
Query: 298 MHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPV- 356
+H+ V++ + L++ H L F+D+L +V AL ++ +
Sbjct: 1031 LHFDLPVAYALQCLLSDCSH---FTNGFLPPEFYDVLNALDDKVQEKALLSFHAKLTRIN 1087
Query: 357 ----FDAYEKL-KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR 411
F AY K + V E + +P L G A V ++++TP++ + ++R
Sbjct: 1088 IAEQFSAYLKEERSVLESMCSSPSLGSG-------AVVYKVIVTPSRVVFCPPDPAPSNR 1140
Query: 412 ---------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSD 462
F+ + F D+ ++ + D TS + + +R++++L
Sbjct: 1141 VFRHWGSENFMYMYFRDDNMERL--------------DYTSGN------ILRRIRNVLKK 1180
Query: 463 GFNLC----GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD---IKNWMGEFT-AKNIAK 514
G + G R++FL S +Q+R+ SA F ++LD +++W+G+ + + AK
Sbjct: 1181 GIEVPHARDGCRFNFLGCSLSQVRNSSAIF-------TLLDHHEVRSWIGDLSHLTSPAK 1233
Query: 515 YAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG 574
Y R+G FSST T + + +D+ + DI + YVF+DG G+I A + + L L
Sbjct: 1234 YLKRLGQAFSSTKETFNVSQSVLDNPVEDITNDDYVFTDGCGEIAKIGAESIVRELNL-- 1291
Query: 575 SPPPSAYQIRYAGYKGVVACWPAKDDGI----RMSLRGSMKKFKSCHTSLEICSWTRFQP 630
S PSA+QIR G KGV+ + + + LR SM KF S HT LEI +
Sbjct: 1292 SYTPSAFQIRLGGAKGVLVVSDQDNPEVTREESILLRESMSKFASNHTMLEIVACAGKSE 1351
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAF---------------EV 675
+L RQ + +LS L +++++ +Q S+L ++ + D A+ +V
Sbjct: 1352 AYLTRQSVLILSDLGINEDVLMEMQEQFLSELRTLIASDDGAYFELKAVLPPKVIWWIDV 1411
Query: 676 LT----------------ASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQC 719
LT A A ++ A L G+ + G L +
Sbjct: 1412 LTRKLGVKILDDEFLSSLARTIYHYRLANTVMRARIPIAQGRTLMGVADFT-GTLDYGEV 1470
Query: 720 FIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA-VDRP-ELH 777
F+Q S + E R+ ++ V + ++PC PGD+R+L D P +L
Sbjct: 1471 FVQYSVTEEET----GADRYVTLDEVD-----VAVHRSPCHHPGDIRVLRCRADVPRQLR 1521
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM---ECTPAEAK 834
L DC+VFP +G RPH +E +G DLDGD++ V WD+ LIP + PM E +
Sbjct: 1522 QLKDCIVFPCQGPRPHPDECTGGDLDGDMFVVIWDKRLIPSRTQVHEPMAFDEENEGDTS 1581
Query: 835 P----------------LTCH-VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
P H + LG NAH+ D S G+ DE+ LA++ +
Sbjct: 1582 PRGGEFYQSTDDDGLIDFYVHSIQDDILGVASNAHLALCDSSHEGSLDESAKALARICSK 1641
Query: 878 AVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSE 937
VDS ++ K + + L PK YPDFM+ +E +Y S K+LG+++R+ K +D +++
Sbjct: 1642 QVDSLRSEKDLEIVRSLAPKNYPDFMQNKEKPSYPSKKVLGKMFRRCKAIFD--TTMTKG 1699
Query: 938 VDINPV-DIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLL---GQYNVNRKEFRHIWS 993
V PV D H+ T G D+ A+ Y +L LL G I
Sbjct: 1700 VTQMPVRDDHFLT----AGYTDYVDHAKMLYRQYKLRLRALLLMSGAQTEAELATGMIVE 1755
Query: 994 MPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVT 1053
P E+ K + + FR F S L+ E+ L ASA Y V
Sbjct: 1756 PPSVYKADYFRFGEQCKDVFYELQTAFRAQFNGDTS--TLASGEELKL----ASACYFVA 1809
Query: 1054 YHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKS 1103
Y S RS LSF WI D L IK N+GK+
Sbjct: 1810 YDD----------SDASTRS---LSFTWIVIDLLTTIKTN-----NMGKT 1841
>gi|403346586|gb|EJY72692.1| Rna-dependent RNA polymerase [Oxytricha trifallax]
Length = 1470
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 186/649 (28%), Positives = 298/649 (45%), Gaps = 131/649 (20%)
Query: 381 KNIDDIAEVRRLVITPTKAYW-----------FLESKDVADRFLRVTFMDEGLQTMNANV 429
KN++ + + RRL ITPT Y+ + +D RF+RV+F++E L+
Sbjct: 552 KNVNFLRQ-RRLFITPTLDYYQPAYEDETNRVIRQYRDHLSRFVRVSFVNEYLEK----- 605
Query: 430 LSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF 489
YY + Q + + +L +G L FL++S++Q+++HS W
Sbjct: 606 -GYYFS-----------DQMNWLLGYLHHVLVNGIQLGNYVLKFLSYSNSQIKNHSCWML 653
Query: 490 SK-----------VGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEV 537
+ + E ++ MG+F+ KN+ K AR G CFS+T +++ +EV
Sbjct: 654 VESLVPNKDFDFPLNENIIM---RSMGDFSQEKNMLKRYARRGQCFSTTKFILQLDKSEV 710
Query: 538 DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPA 597
+ LPD+KRNG++F+DG G I+P+LA +A+ S SA+QIR+ G KGV+ P
Sbjct: 711 TYNLPDVKRNGFIFTDGCGYISPELAQLIAEQFSFKRS---SAFQIRFGGTKGVLMLNP- 766
Query: 598 KDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQ-- 655
+ +G ++ LR S KF+S L + + GFLNRQII L++ L V + +F +Q
Sbjct: 767 RLEGRQIQLRDSQIKFQSNDLGLNVVRCGTYSQGFLNRQIIILMNCLGVPESVFLELQRK 826
Query: 656 ----ASMASKLNLMLVASDVAFEVL----TASCAEQGNTAAIMLSAGFKPQTEPHLQGML 707
A + N ++ + A + S + Q T I LS G E L+ L
Sbjct: 827 AKEYAQVQEIYNNLIKKTSKAIKAFKLSQNKSKSLQQITKLINLSLGPSKWFEQSLKTAL 886
Query: 708 --------------------------------------------TYELGELKECQCFIQV 723
E G L+E + FIQV
Sbjct: 887 LCGYNIPNDPIFSSILYTMQLSSFMNLKKKARIIIPDSCVLLGIVDEFGILEEDEVFIQV 946
Query: 724 SESSL---------ENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRP 774
+ + + + ++K LQ+ V++ +NPC PGD+R+L+AV++P
Sbjct: 947 KQDNYSLKKKPWLWDINLNNQEELEKDSKPLQICQD-VIVTRNPCTHPGDIRLLKAVNKP 1005
Query: 775 ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD---------ENLIPPSKKSCPP 825
EL HL + +VF KG+RP N+ +G DLDGD+Y+V WD EN+ P+ P
Sbjct: 1006 ELSHLFNVVVFSSKGERPQCNKMAGGDLDGDVYFVCWDSLILSHIKKENIQEPATYVKPT 1065
Query: 826 M-ECTPAEAKPLT----CHVNHQNLGQICNAHVVHADRSEY-GAFDENCILLAKLAATAV 879
+ P +++ + ++ LG++ N H+ D+ G E C L+ L + AV
Sbjct: 1066 LISEQPIDSEHIADYFIFYLQRDVLGKLANMHLALCDQIGVDGPLKEECQELSALQSIAV 1125
Query: 880 DSPKTGKIVTMPS--HLKP--KKYPDFMEIEEYQTYKSNKILGRLYRQI 924
D K G+ V + HL+ +PDF E + S +LG LYR I
Sbjct: 1126 DFAKHGESVDKKNFEHLQKMLDNWPDFFEKSNQKMRVSEGVLGMLYRDI 1174
>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2403
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 208/697 (29%), Positives = 319/697 (45%), Gaps = 117/697 (16%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETSVLDIKNWMGEFTAKNIA 513
R+K IL G + G+ YS+ S++QLR++S+WF S ++G +V K W G N+
Sbjct: 1266 RIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTV---KIWSGIEHVDNVR 1322
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K+ +GL FS+T TV +P + + + DI RN +VF++G G+I P+LA + + +
Sbjct: 1323 KFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHVFTEGCGEIGPELAKHLNE--NYN 1379
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-----HTSLEICSWTRF 628
P AYQ+R G KG++ D + +R SM KF H +LEICS +
Sbjct: 1380 FRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDEHRTLEICSVSTT 1439
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
LNRQ+I+LLSTL D +F+ +Q +++ A N +
Sbjct: 1440 SRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQV---------------AQIVNDTNASK 1484
Query: 689 IMLSAGFKPQTE------PHLQGMLT--YELG-ELKECQCFIQVSESSL----------- 728
+ F TE P+++ +L Y+L E + +C I++ +S +
Sbjct: 1485 QAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSL 1544
Query: 729 --ENCFSKHGSRFAET----KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDC 782
F + + K +VI G V++ KNPC PGDVR L+AVD L HL +
Sbjct: 1545 PPNTVFVQLEEEDEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHLRNV 1604
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS----------------CPPM 826
LVF KGD P+ E SGSDLDGD Y+ +D++LI KS
Sbjct: 1605 LVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAYLGDETVSNNDKKANVF 1664
Query: 827 ECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
A + + +V Q LG++ N+H+ +D +GA E I ++K +D PKTG
Sbjct: 1665 NDPFALSSMYSTNVERQELGKMYNSHLAISDL--FGANHEFSIQISKECFKEIDYPKTGI 1722
Query: 887 IVTMPSH----LKPKKYPDFMEIEEYQT--YKSNKILGRLYRQIK-----GAYDENISVS 935
T+P LK K YP +M+ E Y+S I+G++Y QI G + NIS+
Sbjct: 1723 HGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMGKMYDQIDQLVYIGDFLPNISLD 1782
Query: 936 SEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMP 995
N VD D E+ + A+ Y Q++ LL Y+ +E I +
Sbjct: 1783 KS---NLVD-----DYEI-----YLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLD 1829
Query: 996 ------KYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAW 1049
K + +GE++ F EF + F + + + L + N+ E+K SAW
Sbjct: 1830 QGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNI--EKKVSAW 1887
Query: 1050 YQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
Y V Y DL + + L F WIA +
Sbjct: 1888 YHVAYS--------DLKDDRA------LGFYWIARSF 1910
>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1964
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 208/697 (29%), Positives = 319/697 (45%), Gaps = 117/697 (16%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETSVLDIKNWMGEFTAKNIA 513
R+K IL G + G+ YS+ S++QLR++S+WF S ++G +V K W G N+
Sbjct: 823 RIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTV---KIWSGIEHVDNVR 879
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K+ +GL FS+T TV +P + + + DI RN +VF++G G+I P+LA + + +
Sbjct: 880 KFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHVFTEGCGEIGPELAKHLNE--NYN 936
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-----HTSLEICSWTRF 628
P AYQ+R G KG++ D + +R SM KF H +LEICS +
Sbjct: 937 FRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDEHRTLEICSVSTT 996
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
LNRQ+I+LLSTL D +F+ +Q +++ A N +
Sbjct: 997 SRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQV---------------AQIVNDTNASK 1041
Query: 689 IMLSAGFKPQTE------PHLQGMLT--YELG-ELKECQCFIQVSESSL----------- 728
+ F TE P+++ +L Y+L E + +C I++ +S +
Sbjct: 1042 QAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSL 1101
Query: 729 --ENCFSKHGSRFAET----KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDC 782
F + + K +VI G V++ KNPC PGDVR L+AVD L HL +
Sbjct: 1102 PPNTVFVQLEEEDEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHLRNV 1161
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS----------------CPPM 826
LVF KGD P+ E SGSDLDGD Y+ +D++LI KS
Sbjct: 1162 LVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAYLGDETVSNNDKKANVF 1221
Query: 827 ECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
A + + +V Q LG++ N+H+ +D +GA E I ++K +D PKTG
Sbjct: 1222 NDPFALSSMYSTNVERQELGKMYNSHLAISDL--FGANHEFSIQISKECFKEIDYPKTGI 1279
Query: 887 IVTMPSH----LKPKKYPDFMEIEEYQT--YKSNKILGRLYRQIK-----GAYDENISVS 935
T+P LK K YP +M+ E Y+S I+G++Y QI G + NIS+
Sbjct: 1280 HGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMGKMYDQIDQLVYIGDFLPNISLD 1339
Query: 936 SEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMP 995
N VD D E+ + A+ Y Q++ LL Y+ +E I +
Sbjct: 1340 KS---NLVD-----DYEI-----YLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLD 1386
Query: 996 ------KYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAW 1049
K + +GE++ F EF + F + + + L + N+ E+K SAW
Sbjct: 1387 QGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNI--EKKVSAW 1444
Query: 1050 YQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
Y V Y DL + + L F WIA +
Sbjct: 1445 YHVAYS--------DLKDDRA------LGFYWIARSF 1467
>gi|241633126|ref|XP_002410398.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503415|gb|EEC12909.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 176/537 (32%), Positives = 260/537 (48%), Gaps = 62/537 (11%)
Query: 500 IKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIP-PTEVDHELPDI-----KRNG--YV 550
I+ WMG+F+ ++AK ARMG CFSST +V++P + + PDI R+G ++
Sbjct: 1 IRRWMGDFSNIPSVAKKMARMGQCFSSTEESVKVPLDGKAVEDRPDIVGGKHPRSGRPFI 60
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSM 610
FSDGIG I+ L +V + KL+ + PSA QIRYAGYKG++ P G ++ LR SM
Sbjct: 61 FSDGIGMISQPLLEKVCK--KLEMAQIPSAIQIRYAGYKGMLCVNPLLP-GDKLVLRESM 117
Query: 611 KKFK-SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS 669
+KF S SLE+ + +P LNR +IT+L L V +F +Q M LV
Sbjct: 118 RKFTCSSSDSLEVIKVSAPRPVCLNRPLITILEQLGVPSRVFLCLQQKMVLMFADALVCE 177
Query: 670 DVAFEVLT---------------ASCAEQGNTAAIMLSAGFKPQTEP-HLQGMLTYELGE 713
A +VL C + +L +K + H + + L +
Sbjct: 178 STALQVLCTYLSGALPFRRLRMHGLCLTRNPFVRSLLYTVYKSTMDGLHTKSRIAVPLNK 237
Query: 714 -------------LKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCL 760
LK Q F+Q + + G ++ G V++ K PCL
Sbjct: 238 GRNMLGVLDETDTLKYGQVFVQYTALGPDTEGQDDG---LPKTRIIFCTGAVLVTKCPCL 294
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---P 817
PGDVR AVD P LHH+ DC+VFP +G RPH NE +GSDLDGD Y V W ++L+ P
Sbjct: 295 HPGDVRKFTAVDVPALHHVKDCVVFPARGPRPHPNEMAGSDLDGDEYVVIWKKDLLFPGP 354
Query: 818 PSKKSCPPMECTPAEAKP--------LTC-HVNHQNLGQICNAHVVHADRSEYGAFDENC 868
K P +A C ++ + N+G + NAH+ AD E G F + C
Sbjct: 355 NRKAMVFSDHSAPCDANKSLLEGMIQFVCNYIKNDNVGIMSNAHLAWADSLEDGIFSKQC 414
Query: 869 ILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYRQIKGA 927
+ +A+ +T +D KTG+ + KP +YPDFME + TY+S ++LG LYR +
Sbjct: 415 LQIARKISTCLDFAKTGETSYLNKDEKPIQYPDFMEKGSSKDTYRSKRVLGHLYRLHRSL 474
Query: 928 YDENISVSSEVDINPVDIHYDTDL-EVPGSVDFTADARNQKCSYDGQLNGLLGQYNV 983
V ++ D D L +PG ++ A A + + +Y Q+ + QY +
Sbjct: 475 ---EAVVGTDFQTCVEDGDADCSLFALPGWEEYAAAAESVRANYASQMARIRRQYGI 528
>gi|312081788|ref|XP_003143174.1| hypothetical protein LOAG_07593 [Loa loa]
Length = 1450
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 248/953 (26%), Positives = 417/953 (43%), Gaps = 230/953 (24%)
Query: 306 FEIMFLVNAVMHKG------ILNQHQLSDSFFDLLRCQPR---EVIVTALKHIYSY---- 352
F + +L+ A++ +G IL ++ D+F D++ + + E+ + AL+ + +
Sbjct: 272 FGLEYLIAALLSRGAVVKDQILIDNKTRDAFIDMILQRFKDNEELTLEALERLINMIDET 331
Query: 353 -KRP-VFDAYEKL-------KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFL 403
+ P +F +++K+ KDV E + + K EG + VR++VITPT+ +
Sbjct: 332 KEVPCLFTSFQKIRNSLLGQKDVLEEIYQENK-REGYQ------RVRKVVITPTRVLLVV 384
Query: 404 ESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
+ +R LR TF +G + R++ DG
Sbjct: 385 PELLMGNRVLR-TFDKDGNGAL-----------------------------RIQFRDDDG 414
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCF 523
+ +L S++Q+RD+ +F+ I+ +G+F NI K +RMG CF
Sbjct: 415 ---TPSTFVYLGSSNSQMRDNGCYFYDDGKGGQAHKIREQLGKFDRCNIPKMMSRMGQCF 471
Query: 524 S-STHATVEIPPTEVDHELP-----DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
+ + TV + + + D + Y+FSDG GK++ + A ++A + L G+
Sbjct: 472 TQAKRCTVTLKRHKYNKTYDVIGGRDTNQAFYIFSDGAGKVSKEFAEKIALDIGL-GTSV 530
Query: 578 PSAYQIRYAGYKGVVACWPAKD------------DGIRMS---------LRGSMKKFKSC 616
PS YQIR+ G KGV++ P+ D D +M+ R S KFK+
Sbjct: 531 PSCYQIRHRGIKGVLSVDPSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPSQDKFKAP 590
Query: 617 HTS-LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV 675
+EI ++ LNR +I++L VS ++V + +++ +L
Sbjct: 591 RDEYIEIVKYSTPTSVCLNRPMISILD--QVSGMQGFSVHERIRKRIHDLLDIQMTQLAD 648
Query: 676 LTAS---CAEQ-------GNTAAIMLSAGFKPQTEPHLQGMLTY---------------- 709
+ S C E+ N + + L+ GF EP + +L
Sbjct: 649 MLMSEEKCREKLNELPWRVNVSRLTLARGFALTQEPFFRSLLRANIKCTLKKLIAKVQIQ 708
Query: 710 --------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIA 755
E G+L+ Q F+Q + S SK ++ ++ G V++
Sbjct: 709 VPPHFGRSMFGVMDETGQLQWGQVFVQCTRSIWLKTPSKSAAKI-------ILVGKVMLT 761
Query: 756 KNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL 815
KNPC+ GDVR+ EAVD PELHHL D +VFPQ G RPH +E +GSDLDGD Y V WD L
Sbjct: 762 KNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDPEL 821
Query: 816 IPPSKKSCPPMECTPAEA---------------KPLTCHVNHQNLGQICNAHVVHADRSE 860
+ + PP++ T + + K ++ ++G I NA +V+AD
Sbjct: 822 MFEHNE--PPLDFTKSASDNKIVEEEQVDLEMRKFFVNYIKQDSIGTISNAFLVNADL-- 877
Query: 861 YGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL----------------KPKKYPDFME 904
YG E CI +A+ + AVD PKTG PS L + +++PDFM
Sbjct: 878 YGITSEVCINIARKHSKAVDFPKTG---NAPSPLTRQWTQGKNGNILPPERAERWPDFMC 934
Query: 905 IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADAR 964
+Y S++++G+LYR+I+ D+ +++++ ++ V I D DLE PG + A+
Sbjct: 935 KNHEPSYISSRLVGQLYRRIR-LLDDALNLTAAME-GSVTIMLDPDLEYPGWEQYQNVAK 992
Query: 965 NQKCSYDGQLNGLLGQYNV---------------NRKEFRHIWSMPKYNSRKQGELQERL 1009
Q SY + ++ Y + NR R M YN+ +++++
Sbjct: 993 IQLDSYHSHIRSIMENYGIEDEGQLFSGFISVIRNRISDRDTDDMSFYNTNHI--IEKKV 1050
Query: 1010 KHSYSAFRK----EFRQVFEKMNSDFELSDNEKNVLYE------------QKASAWYQVT 1053
+ A+R EF E D++ DN+ E +KASA+Y +
Sbjct: 1051 SAVFRAYRHRFFDEFGGFLESTLPDYD--DNQSGNAQERRICIHPSLDMKRKASAYYILC 1108
Query: 1054 YHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPV 1106
Y S+D S +LSF W+ D L +K QE+ +G++KP+
Sbjct: 1109 YR----NASMDT-------SYRILSFGWLVWDILCHVK---QEV-RLGRAKPI 1146
>gi|118386404|ref|XP_001026321.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1439
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 232/897 (25%), Positives = 380/897 (42%), Gaps = 222/897 (24%)
Query: 330 FFDLLRCQPRE-----VIVTALKHIYSYKRPV----FDAYEKL-KDVQ--ECLIKNPKLN 377
F D + Q R+ ++ +++ Y+ K+ + F A++ L +DVQ E K ++
Sbjct: 483 FLDYIDLQIRDGKSEYILEKGIQYYYNQKKEINRLNFTAFQILFQDVQRQENYFKIQEI- 541
Query: 378 EGPKNIDDIAEVRRLVITPTKAYWFLES-----------KDVADRFLRVTFMDEGLQTMN 426
+++ IA RR+ ITP+ + L+ +D D F+R TF D+ L+ N
Sbjct: 542 RAKRDVKVIA-TRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLE--N 598
Query: 427 ANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAF--SSNQLRDH 484
A + Y S F QK FK + + F+ F S++QLR+
Sbjct: 599 AKHMKY---------VSRYFRQKLKSFKVL-------------NWEFINFGWSASQLRNS 636
Query: 485 SAWFFSKVGETSVL---DIKNWMGEFTAKNI-AKYAARMGLCFSSTHATV--EIPPTEVD 538
S+WFF ET VL D+ +G+F+ N AK +AR+G CFSS+ + E P E
Sbjct: 637 SSWFFH---ETEVLKKQDVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFI 693
Query: 539 HELP------DIKRNG---------YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQI 583
++ ++ NG VF+DGIG I+ DL +++ L + A Q+
Sbjct: 694 DDITTPSAVQEVDANGNICYFRQKKKVFTDGIGTISQDLIRKISDHL---NAFFMCAIQV 750
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS----LEICSWTRFQPGFLNRQIIT 639
RY G KGV+ D + LR SM K+K ++I +++ G+LNRQ+I
Sbjct: 751 RYGGAKGVLTIDYKSDKKNTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVII 810
Query: 640 LLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQG-------------NT 686
LL +L + +E F Q +LN + F + ++ G T
Sbjct: 811 LLRSLGIENEQFIQAQQEYIEELNKSALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQT 870
Query: 687 AAIMLSA--------------GFKP---------QTEPHLQGMLTYELGELKECQCFIQV 723
+ I ++ GF + L G++ E L++ + F +
Sbjct: 871 SRIDMAQDIFCKGVIHTLKKRGFYILRKKSNIFLKKSARLMGVID-EYNVLEQDEVFAYI 929
Query: 724 SESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH----- 778
S+ S ++ F + G V++ KNPCL PGD+R L+AV +
Sbjct: 930 SQDSEKSFFQ--------------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEG 975
Query: 779 -------LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS--------- 822
L + L+FPQKG P T++ +GSDLDGD Y++ WD+ IP +K
Sbjct: 976 KINPFKKLRNILIFPQKGKEPITSQIAGSDLDGDCYFICWDQRFIPLEQKEPFNYDEDDN 1035
Query: 823 --------------------------CPPMECTPAEAKPLTCHV---NHQNLGQICNAHV 853
P E + L + N++NLG+I N+H+
Sbjct: 1036 SQKKQISQEQYDIEISKKPNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHL 1095
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKS 913
V AD+S A D C+ LA L A AVD KTG +P +L K+YPDFME ++ +Y+S
Sbjct: 1096 VFADKSPLYAEDPKCLKLASLHAQAVDYAKTGISPQLPKNLAIKEYPDFMEKDDKPSYQS 1155
Query: 914 NKILGRLYRQIKGAY-----------------DENISVSSEVDINPVDIHYDTDLEVPGS 956
ILG LYRQ+K Y D N+ + +N + + +
Sbjct: 1156 QSILGILYRQVKDQYEKHCKNDIEGDRSQTFIDNNLIFNPPTFVNEIVDEQENKTYLEQE 1215
Query: 957 VDFTADARNQ---KCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSY 1013
+DF +A NQ + + Q G ++ + F + + + +Q+R+ +
Sbjct: 1216 IDFAIEANNQWNIEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAEIVQQRILSTL 1275
Query: 1014 SAFRKEFRQVFEKMNSDFELSDNEKNVLYEQ-------------KASAWYQVTYHRE 1057
A + F +F F+ D +++ Y++ +A+ WY + Y R+
Sbjct: 1276 LAIKNRFELLF------FKNLDEDRDRFYDETNRKKYYSKKCKIRATLWYIICYLRK 1326
>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2876
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 215/758 (28%), Positives = 335/758 (44%), Gaps = 157/758 (20%)
Query: 409 ADRFLRVTFMDEGLQ---TMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
ADRF++V F++E L + ++ SY +NS +K I GF
Sbjct: 1299 ADRFMQVQFVEENLDHRIELQQSLASY----------TNSMMKK--------GIHVPGFG 1340
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFF---------SKVGETSVLDIKN----WMGEFTA-KN 511
+ +L SS+Q R + +WF+ + GE V + + +GEFT +N
Sbjct: 1341 T----FHYLGNSSSQARKNMSWFYCQDKMENAKADGGEEQVYSLDHVRDTLLGEFTNFEN 1396
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILK 571
KY + L F+ST ++ I + ++PD+ NGY F++GIG I A +V + +
Sbjct: 1397 PRKYLRAINLVFASTMPSIVIAEEDYHEDIPDVIVNGYNFTEGIGYIGWKTAQKVNEACE 1456
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT----SLEICSWTR 627
S A+QIR G KGVV P +G+ LR SMKKF + +LEI S
Sbjct: 1457 YIQST--CAFQIRIGGNKGVVVVRPDIQNGVY--LRKSMKKFSTTSNEWSRTLEIVSIPA 1512
Query: 628 FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA 687
++P LNRQ+I LLS L V D F T+ + ++L +L VA L++ + +
Sbjct: 1513 YKPCTLNRQVINLLSGLGVPDRCFLTLLSQSLNELASLLHLPKVAKRALSSDLFDDVSDG 1572
Query: 688 AIMLSAGFKPQTEPHLQGML----------------------------TYELGELKECQC 719
I+ ++P ++G L T + LKE Q
Sbjct: 1573 EIL--------SDPMIRGTLHRIYCKRLVEYRDKCFIPIDTARTLLGVTDDTASLKEGQV 1624
Query: 720 FIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
F+QVS+ E +LQ++ G V +AKNPCL GDVRI++AVD P LHHL
Sbjct: 1625 FLQVSD---------------ENGELQIVTGPVAVAKNPCLHAGDVRIVQAVDIPALHHL 1669
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK-------------SCPPM 826
D + F Q G P E SGSDLDGD Y+V +D +I K+ S P +
Sbjct: 1670 VDVVCFSQNGSVPTFQECSGSDLDGDRYFVLFDREMIGEIKQHDAFLGEDAVAADSDPTI 1729
Query: 827 ECTPAEAKPLTCHVNHQNLGQICNAHV----VHADRSEYGAFDENCILLAKLAATAVDSP 882
+ A+ +T ++ LG I AH+ VH+ + I LA VD
Sbjct: 1730 TQSSLIAQYIT-NIQKGTLGMIALAHLAVCDVHSPKHPLA------IALAIEHFKEVDRV 1782
Query: 883 KTGKIVTMPSHL------KPKKYPDFME--IEEYQTYKSNKILGRLYRQIKGAYDENISV 934
KTG +P+ + + K+P+FME + + ++S+KILGRLY Q +S+
Sbjct: 1783 KTGVGGEIPTDVFQILGEQFDKFPNFMEKSLPQKSYWESDKILGRLYAQC-------VSL 1835
Query: 935 SSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHI 991
+ + P ++ D L PG + ADA Y Q+ LL +Y++ +E +++
Sbjct: 1836 QNVIRFMP-EVKVDPHLLTPGWETYQADAIETYRRYRHQVGSLLKRYDIENEEDVLIQYV 1894
Query: 992 WSMPKYNSRKQGELQERLKHS---YSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASA 1048
++ + + E H + FR++F + F++ + + E+K SA
Sbjct: 1895 DETMSGHTLDKVVVMEIFNHYTVIQNTFREQFLRPFQRAGETIDQTITTHQHEIEKKVSA 1954
Query: 1049 WYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
WY Y + + LSF WI +
Sbjct: 1955 WYHTAY-------------SDNKKLTKFLSFYWIVRKW 1979
>gi|111610628|gb|ABH11712.1| RNA-dependent RNA polymerase [Tetrahymena thermophila]
Length = 1434
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 232/897 (25%), Positives = 380/897 (42%), Gaps = 222/897 (24%)
Query: 330 FFDLLRCQPRE-----VIVTALKHIYSYKRPV----FDAYEKL-KDVQ--ECLIKNPKLN 377
F D + Q R+ ++ +++ Y+ K+ + F A++ L +DVQ E K ++
Sbjct: 478 FLDYIDLQIRDGKSEYILEKGIQYYYNQKKEINRLNFTAFQILFQDVQRQENYFKIQEI- 536
Query: 378 EGPKNIDDIAEVRRLVITPTKAYWFLES-----------KDVADRFLRVTFMDEGLQTMN 426
+++ IA RR+ ITP+ + L+ +D D F+R TF D+ L+ N
Sbjct: 537 RAKRDVKVIA-TRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLE--N 593
Query: 427 ANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAF--SSNQLRDH 484
A + Y S F QK FK + + F+ F S++QLR+
Sbjct: 594 AKHMKY---------VSRYFRQKLKSFKVL-------------NWEFINFGWSASQLRNS 631
Query: 485 SAWFFSKVGETSVL---DIKNWMGEFTAKNI-AKYAARMGLCFSSTHATV--EIPPTEVD 538
S+WFF ET VL D+ +G+F+ N AK +AR+G CFSS+ + E P E
Sbjct: 632 SSWFFH---ETEVLKKQDVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFI 688
Query: 539 HELP------DIKRNG---------YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQI 583
++ ++ NG VF+DGIG I+ DL +++ L + A Q+
Sbjct: 689 DDITTPSAVQEVDANGNICYFRQKKKVFTDGIGTISQDLIRKISDHL---NAFFMCAIQV 745
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS----LEICSWTRFQPGFLNRQIIT 639
RY G KGV+ D + LR SM K+K ++I +++ G+LNRQ+I
Sbjct: 746 RYGGAKGVLTIDYKSDKKNTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVII 805
Query: 640 LLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQG-------------NT 686
LL +L + +E F Q +LN + F + ++ G T
Sbjct: 806 LLRSLGIENEQFIQAQQEYIEELNKSALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQT 865
Query: 687 AAIMLSA--------------GFKP---------QTEPHLQGMLTYELGELKECQCFIQV 723
+ I ++ GF + L G++ E L++ + F +
Sbjct: 866 SRIDMAQDIFCKGVIHTLKKRGFYILRKKSNIFLKKSARLMGVID-EYNVLEQDEVFAYI 924
Query: 724 SESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH----- 778
S+ S ++ F + G V++ KNPCL PGD+R L+AV +
Sbjct: 925 SQDSEKSFFQ--------------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEG 970
Query: 779 -------LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS--------- 822
L + L+FPQKG P T++ +GSDLDGD Y++ WD+ IP +K
Sbjct: 971 KINPFKKLRNILIFPQKGKEPITSQIAGSDLDGDCYFICWDQRFIPLEQKEPFNYDEDDN 1030
Query: 823 --------------------------CPPMECTPAEAKPLTCHV---NHQNLGQICNAHV 853
P E + L + N++NLG+I N+H+
Sbjct: 1031 SQKKQISQEQYDIEISKKPNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHL 1090
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKS 913
V AD+S A D C+ LA L A AVD KTG +P +L K+YPDFME ++ +Y+S
Sbjct: 1091 VFADKSPLYAEDPKCLKLASLHAQAVDYAKTGISPQLPKNLAIKEYPDFMEKDDKPSYQS 1150
Query: 914 NKILGRLYRQIKGAY-----------------DENISVSSEVDINPVDIHYDTDLEVPGS 956
ILG LYRQ+K Y D N+ + +N + + +
Sbjct: 1151 QSILGILYRQVKDQYEKHCKNDIEGDRSQTFIDNNLIFNPPTFVNEIVDEQENKTYLEQE 1210
Query: 957 VDFTADARNQ---KCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSY 1013
+DF +A NQ + + Q G ++ + F + + + +Q+R+ +
Sbjct: 1211 IDFAIEANNQWNIEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAEIVQQRILSTL 1270
Query: 1014 SAFRKEFRQVFEKMNSDFELSDNEKNVLYEQ-------------KASAWYQVTYHRE 1057
A + F +F F+ D +++ Y++ +A+ WY + Y R+
Sbjct: 1271 LAIKNRFELLF------FKNLDEDRDRFYDETNRKKYYSKKCKIRATLWYIICYLRK 1321
>gi|241997884|ref|XP_002433585.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215495344|gb|EEC04985.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 528
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 172/545 (31%), Positives = 252/545 (46%), Gaps = 80/545 (14%)
Query: 500 IKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIP---------------PTEVDHELPD 543
I+ +G+ ++ +++ K ARMG FS + V +P P L +
Sbjct: 1 IRQGIGDLSSIRSVPKLMARMGQAFSQSLGFVTVPRQYTAVEADVRCRAPPGASAAALAE 60
Query: 544 IKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR 603
+ Y+FSDGIG+I+P L +V + L+L+ P A QIRY G KG++ P G R
Sbjct: 61 AAKRDYIFSDGIGRISPALMRKVYRSLELEDGEEPCAVQIRYGGCKGMLLVDPTMA-GRR 119
Query: 604 MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQAS-MASKL 662
+ R SM KF S H L + ++ + +LNR +IT+L + + F +Q + S +
Sbjct: 120 IVFRTSMCKFPSDHEDLYVLKTSKPRVLYLNRPMITILEQSGIRAKAFLALQNRVLDSFI 179
Query: 663 NLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY------------- 709
N ML A + A +VL CA + + G EP +G++
Sbjct: 180 NSMLDAHEAA-QVLCGYCALRLPYKELA-GVGVDLTVEPFFRGLIRAVNRKVLSEWLTKA 237
Query: 710 -----------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFV 752
E L+ Q F+Q S R+ T ++ G V
Sbjct: 238 RILVPPEKGRTMFGVLDETDTLEYGQVFVQYSNDMF---------RYKATDPATILKGDV 288
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++ KNPC+ PGD+R L AVD P LHH+ DC+VFP KG+RPH +E SGSDLDGD Y V W
Sbjct: 289 IVTKNPCMHPGDIRRLTAVDVPRLHHVRDCIVFPAKGERPHPDEMSGSDLDGDEYSVLWY 348
Query: 813 ENLIPPSKKSCPPMEC---------TPAEAKPLT---C-HVNHQNLGQICNAHVVHADRS 859
E+LI + +C PM P E + + C ++ +G I NAH+V AD
Sbjct: 349 EDLI--FRNNCSPMHYYSDPPKERKAPIEVQDMIDFFCQYIKGDKIGLIANAHLVWADML 406
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME-IEEYQTYKSNKILG 918
+ G C LA+ A +D K G + + KP YPDFME ++ TY S K+LG
Sbjct: 407 DGGINSRRCRDLARKCAVNLDFAKRGDLKGFQNSEKPPMYPDFMEKLDTKNTYCSKKVLG 466
Query: 919 RLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLL 978
+LYR K + +S+E D D L + G +F AR Y ++ LL
Sbjct: 467 QLYRNCK-----KVELSTECLEVVEDSLPDPRLLLDGREEFIESARTSYRRYAMKIRALL 521
Query: 979 GQYNV 983
Y +
Sbjct: 522 KSYGI 526
>gi|170584472|ref|XP_001897023.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158595558|gb|EDP34101.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1542
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 213/733 (29%), Positives = 326/733 (44%), Gaps = 140/733 (19%)
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV-------GET--SVLDIKNWMGE 506
V IL G + R Y FLA+S++Q+RD + +S GE +V DI+ WMG+
Sbjct: 540 VYRILGTGLRIASRHYQFLAWSNSQMRDGGCYMYSDAIVNDEVHGEVVCNVEDIRRWMGD 599
Query: 507 FTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV---------FSDGIG 556
FTA K + K +RMG CF+ T+++ D ++ D G V FSDG+G
Sbjct: 600 FTASKTVPKLMSRMGQCFTQAQPTIKLKKD--DWKVEDDIMGGIVHPETGEVFNFSDGVG 657
Query: 557 KITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD--DGIRMSLRGSMKKFK 614
+I+ A +A+ L L P PS YQ+R+ G+KGV+ P D D + + R S KKF+
Sbjct: 658 RISKKYADRIAKTLGL--YPTPSCYQVRFKGFKGVLCIDPLLDELDQVNIVFRKSQKKFE 715
Query: 615 SCHTS---LEICSWTRFQPGFLNRQIITLLSTLN----------VSDEIFWTVQASMASK 661
S +E+ ++ P LNR +I +L ++ V + I ++ + K
Sbjct: 716 EDDESAAEVEVVKYSMPSPVRLNRPLIMILDQVSDKQGRHLHKKVCNRIHSLLELEL-DK 774
Query: 662 LNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY------------ 709
L M+ +VA E L++ + + + S G EP + +LT
Sbjct: 775 LAAMMFDENVATEELSSRLSLPIDFHQLH-SNGITFTNEPFFRSLLTAIHRYNIKLHLSK 833
Query: 710 ------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF 751
+ G L+ Q F+Q S S ++ KK+ V G
Sbjct: 834 SKIFLPCSMGRTMYGVIDDTGLLQYGQVFVQYSSS----------MQYVSAKKI-VYTGS 882
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++ KNPC GDVR+ EAV + L HLCD +VFP+ G RPH++E +GSDLDGD Y V +
Sbjct: 883 VMVTKNPCHVAGDVRMFEAVYQDALLHLCDVIVFPRYGPRPHSDEMAGSDLDGDEYTVIF 942
Query: 812 DENLIPPSKK-------SCPPMECTPAEAKPLT----CHVNHQNLGQICNAHVVHADRSE 860
D+ L + + S P TPA + +++ ++G++ NAH++
Sbjct: 943 DKELFFENNERAMFFPNSLPTEYGTPATTGDMIDFFLKYLSQDSIGRMSNAHLI------ 996
Query: 861 YGAFDENCILLAKLAATAVDSPKTGKIVTMP--SHLKPKKYPDFMEIEEYQTYKSNKILG 918
E C +A+ A AVD PKTG + P SH + + PD+M+ +Y+S ++LG
Sbjct: 997 ----IEVCDDIARKCAVAVDFPKTG-VAAKPLLSHEQCEVMPDYMQNMIKPSYRSKRLLG 1051
Query: 919 RLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLL 978
LYR+ + D + V + D + + ++ + Y ++ L+
Sbjct: 1052 ELYRKARRVEDISEIVQGTKFADYCDPQLCDESLFHEQSELIQESLRLRDEYHSRIQQLM 1111
Query: 979 GQYNVNRKE---------FRHIWSMPK-----YNSRKQGELQERLKHSYSAFRKEFRQVF 1024
+Y ++ + + I M K YNS K EL R +S FR EF + F
Sbjct: 1112 DEYGISDEASVISGHSMTIKRIIEMEKDDYSFYNSDKIVEL--RYSRIFSYFRHEFFKEF 1169
Query: 1025 EKMNSDFELSDN------EKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLS 1078
SDF+ D NV +KA AWY VTY + S S
Sbjct: 1170 GG-ESDFQTVDAFGKREMRWNVALIRKAKAWYTVTYTSAFRSSS------------EFRS 1216
Query: 1079 FAWIANDYLARIK 1091
F WI D L IK
Sbjct: 1217 FPWIVWDILLIIK 1229
>gi|392890785|ref|NP_495713.2| Protein RRF-3 [Caenorhabditis elegans]
gi|316979926|emb|CAA88315.2| Protein RRF-3 [Caenorhabditis elegans]
Length = 1765
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 221/850 (26%), Positives = 382/850 (44%), Gaps = 143/850 (16%)
Query: 342 IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTK--- 398
+VTA +Y ++ ++ K + +Q+ + P PKN +A+V ++TP++
Sbjct: 639 VVTAFTTMYQSRKIQYERLLKGESLQDVGLAKPL----PKNCVSVAKV---IVTPSRILL 691
Query: 399 -AYWFLESKDVADRF-----LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
A + V RF LR F D+ L + ++D + N+ + +
Sbjct: 692 MAPEVMMVNRVVRRFGPDYALRCVFRDDNLGRL-----------AIRDFSINNIDHMSNI 740
Query: 453 FKR-VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK-----VGETS--VLDIKNWM 504
+ L +G + R YSFL +S++Q+RD + ++ GE + V DI+ WM
Sbjct: 741 VTEGIYLTLKNGIQVADRVYSFLGWSNSQMRDQGCYLYAPRVNALTGEVTGTVEDIRVWM 800
Query: 505 GEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHEL--PDIK---RNGYVFSDGIGKI 558
G+F A ++ K +RMG CF+ TV + E H + PDI+ N Y FSDG G+I
Sbjct: 801 GDFRDAISVPKMMSRMGQCFTQAQPTVRL---ERHHWIVEPDIEGGVENKYCFSDGCGRI 857
Query: 559 TPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMS---LRGSMKKFKS 615
+ LA +++IL+L P+ +Q+R+ G+KG++ P DD I M R S +KF
Sbjct: 858 SIKLATHISKILQL--KEVPACFQVRFKGFKGILVIDPTIDDIINMPKVIFRKSQQKFGE 915
Query: 616 CHTSL-----EICSWTRFQPGFLNRQIITLLSTLN----------VSDEIFWTVQASMAS 660
L E+ + P LNR IT+L ++ +++ + + ++ + S
Sbjct: 916 GGGELQDEYLEVVKYAMPSPVCLNRPFITILDQVSEKQSASSHRRITNRVHYYLERELCS 975
Query: 661 KLNLMLVASDVAFEVLT-ASCAEQGNTAAIMLSAGFKPQTEPHLQGML--TYE---LGEL 714
N+++ + A E++ + A N A+ AGF+ +P ++ ML Y + +
Sbjct: 976 LSNMLINENQAAEELVNRTNLAIDWNAAS--KRAGFELSVDPLIRDMLFSIYRYNIIHHI 1033
Query: 715 KECQCFIQ----------VSESSL---ENCFSKHGSRFAETKKLQVI-NGFVVIAKNPCL 760
+ + F+ V E+ L F ++ +T ++ G V+I KNPC
Sbjct: 1034 SKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPSIRQTSNRPILKTGKVLITKNPCH 1093
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
PGDVR+ +AV +P L HL D +VFPQ G RPH +E +GSDLDGD Y + WD+ ++
Sbjct: 1094 VPGDVRVFDAVWQPALAHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYN 1153
Query: 821 KSC---PPMECTPAEAKPLT--------CHVNHQNLGQICNAHVVHADRSEYGAFDENCI 869
+ P + +P T ++ ++G++ +AH+ +AD +G F ENC
Sbjct: 1154 EEAMVFPSSSAAEEDKEPTTDDMVEFFLRYLQQDSIGRMSHAHLAYADL--HGLFHENCH 1211
Query: 870 LLAKLAATAVDSPKTGKIVT-MPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAY 928
+A A AVD PK+G + S + + PD+M Y S ++ G+L+R+ +
Sbjct: 1212 AIALKCAVAVDFPKSGVPAEPLSSFEQCEMTPDYMMSGGKPMYYSTRLNGQLHRKARKV- 1270
Query: 929 DENISVSSEVDINPVDIHYDTDLEVPGSVDF-------TADARNQKCSYDGQLNGLLGQY 981
E + E + + YD L P VD + Y ++ LL +Y
Sbjct: 1271 -EEVLEEFETRGSVFEREYDK-LICPEDVDVFFGNEIKLVQTLTLRDEYVDRMQQLLDEY 1328
Query: 982 NV---------NRKEFRHIWSMPK-----YNSRKQGELQERLKHSYSAFRKEFRQVFEKM 1027
+ + + + M + Y++ K EL R + Y+ FR +F + F
Sbjct: 1329 GIEDEASVVSGHAASIKRLAGMERDDYSFYHTDKVVEL--RYEKLYAVFRAKFFEEFG-- 1384
Query: 1028 NSDFELSDNEKNV------LYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAW 1081
+ + ++ KN +K WY V Y + + K+ + Q S W
Sbjct: 1385 GEEINIENDGKNTRLKCTKAMHEKIRQWYFVAYVQPKINKAGRCIGQ---------SLPW 1435
Query: 1082 IANDYLARIK 1091
+A D L ++
Sbjct: 1436 VAWDALCDLR 1445
>gi|392861850|gb|EAS37560.2| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1195
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 229/805 (28%), Positives = 355/805 (44%), Gaps = 139/805 (17%)
Query: 380 PKNIDDIAEVRRLVITPTKAYWF---LESK--------DVADRFLRVTFMDEGLQTMNAN 428
P N+ +V R +TP+ Y + +E+K D + FLRV F+DE +
Sbjct: 411 PNNV----KVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPV--- 463
Query: 429 VLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
Y P + N F + R K +L G + G +SFL FS + LR + WF
Sbjct: 464 ----YFDP--QASLHNIFHE------RFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWF 511
Query: 489 FSKVGETS-----VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELP 542
+ +S I +G F+ + AK AAR+G FS T ++ IP V P
Sbjct: 512 VAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEP 571
Query: 543 DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
D+KRNG VFSDG+G +P L ++ L P+ +QIR+AG KG+V+ + G
Sbjct: 572 DMKRNGRVFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSL-DTRLKGE 630
Query: 603 RMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA---- 656
++ LR SM KF + ++E+C S R P +LN QII +L L V F +Q+
Sbjct: 631 QLRLRESMVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIE 690
Query: 657 ------SMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLT-- 708
ASK + L S +A EV E I+ GF +P L+ ++
Sbjct: 691 RLLSVGKSASKTSQFLEESSIAKEVRVPWLIE------ILHGLGFHHDQDPFLRSVVQLA 744
Query: 709 --YELGELKECQCFIQVSESSL------ENCFSKHGSRFA-----ETKKLQVINGFVVIA 755
+++ +LK + I+V E+ E + G F E + ++ V++
Sbjct: 745 IFFKMRDLK-YRARIRVPEAVTLYGIMDETGYLNEGEIFCTFLNEEGGREILVRDQVIVT 803
Query: 756 KNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
+ P L PGDV+ +AVD PE L L +C++F Q G R + SG DLDGDLY V +D
Sbjct: 804 RAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYD 863
Query: 813 ENLIPPSKKSCPPMECTPAEAKPLTCHV-------------NHQNLGQICNAHVVHADRS 859
E L+PP + PP E K L V LG+I H AD+
Sbjct: 864 ERLMPPC--TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQR 921
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM--------------- 903
G D++C+LLA+L + AVD K+G V + K P+ YPDFM
Sbjct: 922 PAGTLDQDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPSPRIKIADSIEVV 981
Query: 904 EIEEY---------------QTYKSNKILGRLYRQI-KGAYDENISVSSEVD------IN 941
E E+Y + YKSN+ILG +YR I + + + +S++ +N
Sbjct: 982 EEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLN 1041
Query: 942 PVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVN--RKEFRHIWSMPKYNS 999
+ + ++ E D R K Y+ +L ++ QY+ + + +
Sbjct: 1042 AIWDYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSIL 1101
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQK-ASAWYQVTYHREW 1058
+ + R K + + R+E++++ S D+ + E+ AS W+ + H ++
Sbjct: 1102 GQNSKQSRRDKEASQSMREEYQELVNFTISMLTDRDSGGDDSLERSIASFWHAL--HAKY 1159
Query: 1059 VKKSLDLLEQGSARSVVLLSFAWIA 1083
S + V LLSF WIA
Sbjct: 1160 SGSR-------SQKKVALLSFPWIA 1177
>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1883
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 203/693 (29%), Positives = 318/693 (45%), Gaps = 108/693 (15%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETSVLDIKNWMGEFTAKNIA 513
R+K IL G + G YS+ S++QLR++S+WF S ++G +V K W G N+
Sbjct: 998 RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTV---KIWSGIEHVDNVR 1054
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K+ +GL FS+T TV +P + + + DI RN + F++G G+I P+LA + + +
Sbjct: 1055 KFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHEFTEGCGEIGPELAKHLNE--NYN 1111
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-----HTSLEICSWTRF 628
P AYQ+R G KGV+ D + +R SM KF H +LEICS +
Sbjct: 1112 FRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDEHRTLEICSVSTT 1171
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
LNRQ+I+LLSTL D +F+ +Q +++ A N +
Sbjct: 1172 SRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQV---------------AQIVNDTNASK 1216
Query: 689 IMLSAGFKPQTE------PHLQGMLT--YELG-ELKECQCFIQVSESSL----------- 728
+ F TE P+++ +L Y+L E + +C I++ +S +
Sbjct: 1217 QAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSL 1276
Query: 729 --ENCFSKHGSRFAET-----KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD 781
F + + K +VI G V++ KNPC PGDVR L+AVD L HL +
Sbjct: 1277 PPNTVFVQLEEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHLRN 1336
Query: 782 CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---PPSKKSCPPMECTPAEAKP--- 835
LVF KGD P+ E SGSDLDGD Y+ +D++LI S+ + +E K
Sbjct: 1337 VLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVSNNDKKANV 1396
Query: 836 ----------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
+ + Q LG++ ++H+ +D +YGA + I ++K +D PKTG
Sbjct: 1397 FNDPFALSSMYSTNAERQELGKLYHSHLAISD--QYGANHKYSIQISKECFKEIDYPKTG 1454
Query: 886 KIVTMPS----HLKPKKYPDFMEIEEYQT--YKSNKILGRLYRQIKGAYDENISVSSEVD 939
T+P L+ YP +M+ E Y+S KI+G++Y QI D+ + + D
Sbjct: 1455 IHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQI----DQLVYIG---D 1507
Query: 940 INPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSM----- 994
P +I D V G + A+ Y Q++ LL Y+ +E I +
Sbjct: 1508 FLP-NISLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLDQGFI 1566
Query: 995 -PKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVT 1053
K + +GE++ F EF + F + + + L + N+ E+K SAWY V
Sbjct: 1567 SDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNI--EKKVSAWYHVA 1624
Query: 1054 YHREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
Y DL + + L F WIA +
Sbjct: 1625 YS--------DLKDDRA------LGFYWIARSF 1643
>gi|392886219|ref|NP_001250556.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
gi|345107385|emb|CCD31066.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
Length = 1520
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 254/1008 (25%), Positives = 426/1008 (42%), Gaps = 249/1008 (24%)
Query: 285 PDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLS------DSFFDLLRCQP 338
P +E+ V+D + E F I +L+ ++ +G + + QL +F +++
Sbjct: 268 PKYEI-VDDKL--IDVNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYY 324
Query: 339 R---EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAE------- 388
R ++ AL+ + + D +++ + +CL K + E K ++ + E
Sbjct: 325 RNDNQLCEAALEDLVH----LIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGY 380
Query: 389 --VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVA 435
VR+++ TPT+ + + +R LR VTF D+ + M +NV +
Sbjct: 381 QRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLL- 439
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF------- 488
D T+N + L G + R Y FL S++Q+RD+ A+F
Sbjct: 440 ----DRTANKY-------------LEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDK 482
Query: 489 ----FSKVGETS--------VLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHAT-VEIPP 534
F K T+ + +++ +G F+ +N+ K AR+G CF+ + T V +
Sbjct: 483 QLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGR 542
Query: 535 TEV--DHELPDIK-RNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYK 589
+ ++L + NG Y FSDG+G ++ A EV+Q ++ G PS +QIR+ G K
Sbjct: 543 DDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQF-GKAVPSCFQIRFRGNK 601
Query: 590 GVVACWPAKDD-----------GIRMS---LRGSMKKFKSCHTSLEICSWTRFQPGFL-- 633
GV+A P D+ ++M+ R S KF++ S + +F L
Sbjct: 602 GVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVA 661
Query: 634 -NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
N+ I +L VS+ + S++ ++ ++F A+Q N +
Sbjct: 662 LNKPFINILD--QVSEMQSLDCHKRITSRIEELMDRQILSF-------AKQMNEETFCRN 712
Query: 693 A-----------------GFKPQTEPHLQGMLTY-------------------------- 709
GF +EP + ++
Sbjct: 713 KLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSML 772
Query: 710 ----ELGELKECQCFIQVSESSLENCFSK------HGSRFAETKKLQVINGFVVIAKNPC 759
E G L+ Q F+Q +++ + + HGS +++ G V++ KNPC
Sbjct: 773 GVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGS--------EIVTGTVLLTKNPC 824
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
+ PGDVRI EAVD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y V WD+ L+
Sbjct: 825 IVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELL--L 882
Query: 820 KKSCPPMEC------TPAEAKPL--------TCHVNHQNLGQICNAHVVHADRSEYGAFD 865
+++ P + P + + L ++ ++GQI N+H+ ++D +YG
Sbjct: 883 ERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSD--QYGLNS 940
Query: 866 ENCILLAKLAATAVDSPKTGK---------------IVTMPSHLKPKKYPDF-MEIEEYQ 909
C+ LAK AVD K+G+ +P P++ PDF M E
Sbjct: 941 RVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPE-NPERIPDFHMGNERSP 999
Query: 910 TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCS 969
Y S ++ G+L+R+ + A D I +S E D +I D + V G + A+ Q S
Sbjct: 1000 MYVSPRLCGKLFREFQ-AIDNVIKISEERD-EQYNIELDETIFVTGFERYMESAQKQLSS 1057
Query: 970 YDGQLNGLLGQYNVNRK---------EFRHIWS------MPKYNSRKQGELQERLKHSYS 1014
Y+GQL ++ Y + + E R+ S M YN+ + ++ ++
Sbjct: 1058 YNGQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQM--IETKMTSLVC 1115
Query: 1015 AFRKEFRQVFEKMNSDFEL----SDNEKNVLY---------EQKASAWYQVTYHREWVKK 1061
FR+ F + F L DN + Y +KA AWY+ Y
Sbjct: 1116 KFRETFFEEFGGFTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYEC----- 1170
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARIK---IKCQEMANIGKSKPV 1106
S R V LSFAWIA D +A++K + E IG + P+
Sbjct: 1171 ------AQSTREVRKLSFAWIAYDVIAKVKETNVLNNERMQIGGANPM 1212
>gi|392886217|ref|NP_001250555.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
gi|8886070|gb|AAF80368.1|AF159144_1 RRF-1 [Caenorhabditis elegans]
gi|14530419|emb|CAC42290.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
Length = 1601
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 254/1008 (25%), Positives = 426/1008 (42%), Gaps = 249/1008 (24%)
Query: 285 PDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLS------DSFFDLLRCQP 338
P +E+ V+D + E F I +L+ ++ +G + + QL +F +++
Sbjct: 349 PKYEI-VDDKL--IDVNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYY 405
Query: 339 R---EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAE------- 388
R ++ AL+ + + D +++ + +CL K + E K ++ + E
Sbjct: 406 RNDNQLCEAALEDLVH----LIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGY 461
Query: 389 --VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVA 435
VR+++ TPT+ + + +R LR VTF D+ + M +NV +
Sbjct: 462 QRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLL- 520
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF------- 488
D T+N + L G + R Y FL S++Q+RD+ A+F
Sbjct: 521 ----DRTANKY-------------LEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDK 563
Query: 489 ----FSKVGETS--------VLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHAT-VEIPP 534
F K T+ + +++ +G F+ +N+ K AR+G CF+ + T V +
Sbjct: 564 QLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGR 623
Query: 535 TEV--DHELPDIK-RNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYK 589
+ ++L + NG Y FSDG+G ++ A EV+Q ++ G PS +QIR+ G K
Sbjct: 624 DDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQF-GKAVPSCFQIRFRGNK 682
Query: 590 GVVACWPAKDD-----------GIRMS---LRGSMKKFKSCHTSLEICSWTRFQPGFL-- 633
GV+A P D+ ++M+ R S KF++ S + +F L
Sbjct: 683 GVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVA 742
Query: 634 -NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
N+ I +L VS+ + S++ ++ ++F A+Q N +
Sbjct: 743 LNKPFINILD--QVSEMQSLDCHKRITSRIEELMDRQILSF-------AKQMNEETFCRN 793
Query: 693 A-----------------GFKPQTEPHLQGMLTY-------------------------- 709
GF +EP + ++
Sbjct: 794 KLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSML 853
Query: 710 ----ELGELKECQCFIQVSESSLENCFSK------HGSRFAETKKLQVINGFVVIAKNPC 759
E G L+ Q F+Q +++ + + HGS +++ G V++ KNPC
Sbjct: 854 GVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGS--------EIVTGTVLLTKNPC 905
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
+ PGDVRI EAVD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y V WD+ L+
Sbjct: 906 IVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELL--L 963
Query: 820 KKSCPPMEC------TPAEAKPL--------TCHVNHQNLGQICNAHVVHADRSEYGAFD 865
+++ P + P + + L ++ ++GQI N+H+ ++D +YG
Sbjct: 964 ERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSD--QYGLNS 1021
Query: 866 ENCILLAKLAATAVDSPKTGK---------------IVTMPSHLKPKKYPDF-MEIEEYQ 909
C+ LAK AVD K+G+ +P P++ PDF M E
Sbjct: 1022 RVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPE-NPERIPDFHMGNERSP 1080
Query: 910 TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCS 969
Y S ++ G+L+R+ + A D I +S E D +I D + V G + A+ Q S
Sbjct: 1081 MYVSPRLCGKLFREFQ-AIDNVIKISEERD-EQYNIELDETIFVTGFERYMESAQKQLSS 1138
Query: 970 YDGQLNGLLGQYNVNRK---------EFRHIWS------MPKYNSRKQGELQERLKHSYS 1014
Y+GQL ++ Y + + E R+ S M YN+ + ++ ++
Sbjct: 1139 YNGQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQM--IETKMTSLVC 1196
Query: 1015 AFRKEFRQVFEKMNSDFEL----SDNEKNVLY---------EQKASAWYQVTYHREWVKK 1061
FR+ F + F L DN + Y +KA AWY+ Y
Sbjct: 1197 KFRETFFEEFGGFTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYEC----- 1251
Query: 1062 SLDLLEQGSARSVVLLSFAWIANDYLARIK---IKCQEMANIGKSKPV 1106
S R V LSFAWIA D +A++K + E IG + P+
Sbjct: 1252 ------AQSTREVRKLSFAWIAYDVIAKVKETNVLNNERMQIGGANPM 1293
>gi|320034943|gb|EFW16885.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
Length = 1195
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 229/805 (28%), Positives = 354/805 (43%), Gaps = 139/805 (17%)
Query: 380 PKNIDDIAEVRRLVITPTKAYWF---LESK--------DVADRFLRVTFMDEGLQTMNAN 428
P N+ +V R +TP+ Y + +E+K D + FLRV F+DE +
Sbjct: 411 PNNV----KVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPV--- 463
Query: 429 VLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
Y P + N F + R K +L G + G +SFL FS + LR + WF
Sbjct: 464 ----YFDP--QASLHNIFHE------RFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWF 511
Query: 489 FSKVGETS-----VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELP 542
+ +S I +G F+ + AK AAR+G FS T ++ IP V P
Sbjct: 512 VAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEP 571
Query: 543 DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
D+KRNG VFSDG+G +P L ++ L P+ +QIR+AG KG+V+ + G
Sbjct: 572 DMKRNGRVFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSL-DTRLKGE 630
Query: 603 RMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA---- 656
++ LR SM KF + ++E+C S R P +LN QII +L L V F +Q+
Sbjct: 631 QLRLRESMVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIE 690
Query: 657 ------SMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLT-- 708
ASK + L S +A EV E I+ GF +P L+ ++
Sbjct: 691 RLLSVGKSASKTSQFLEESSIAKEVRVPWLIE------ILHGLGFHHDQDPFLRSVVQLA 744
Query: 709 --YELGELKECQCFIQVSESSL------ENCFSKHGSRFA-----ETKKLQVINGFVVIA 755
+++ +LK + I+V E+ E + G F E + ++ V++
Sbjct: 745 IFFKMRDLK-YRARIRVPEAVTLYGIMDETGYLNEGEIFCTFLNEEGGREILVRDQVIVT 803
Query: 756 KNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
+ P L PGDV+ +AVD PE L L +C++F Q G R + SG DLDGDLY V +D
Sbjct: 804 RAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYD 863
Query: 813 ENLIPPSKKSCPPMECTPAEAKPLTCHV-------------NHQNLGQICNAHVVHADRS 859
E L+PP + PP E K L V LG+I H AD+
Sbjct: 864 ERLMPPC--TYPPANYPKVEEKLLDREVLRDDIIDFFVTFMQQDQLGRIATIHQAIADQR 921
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM--------------- 903
G D +C+LLA+L + AVD K+G V + K P+ YPDFM
Sbjct: 922 PAGTLDRDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPSPRIKIADSIEVV 981
Query: 904 EIEEY---------------QTYKSNKILGRLYRQI-KGAYDENISVSSEVD------IN 941
E E+Y + YKSN+ILG +YR I + + + +S++ +N
Sbjct: 982 EEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLN 1041
Query: 942 PVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVN--RKEFRHIWSMPKYNS 999
+ + ++ E D R K Y+ +L ++ QY+ + + +
Sbjct: 1042 AIWDYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSIL 1101
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQK-ASAWYQVTYHREW 1058
+ + R K + + R+E++++ S D+ + E+ AS W+ + H ++
Sbjct: 1102 GQNSKQSRRDKEASQSMREEYQELVNFTISMLTDRDSGGDDSLERSIASFWHAL--HGKY 1159
Query: 1059 VKKSLDLLEQGSARSVVLLSFAWIA 1083
S + V LLSF WIA
Sbjct: 1160 SGSR-------SQKKVALLSFPWIA 1177
>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2417
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 204/693 (29%), Positives = 319/693 (46%), Gaps = 108/693 (15%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETSVLDIKNWMGEFTAKNIA 513
R+K IL G + G YS+ S++QLR++S+WF S ++G +V K W G N+
Sbjct: 1251 RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTV---KIWSGIEHVDNVR 1307
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K+ +GL FS+T TV +P + + + DI RN + F++G G+I P+LA + + +
Sbjct: 1308 KFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHEFTEGCGEIGPELAKHLNE--NYN 1364
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK--SC---HTSLEICSWTRF 628
P AYQ+R G KGV+ D + +R SM KF C H +LEICS +
Sbjct: 1365 FRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDEHRTLEICSVSTT 1424
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
LNRQ+I+LLSTL D +F+ +Q +++ A N +
Sbjct: 1425 SRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQV---------------AQIVNDTNASK 1469
Query: 689 IMLSAGFKPQTE------PHLQGMLT--YELG-ELKECQCFIQVSESSL----------- 728
+ F TE P+++ +L Y+L E + +C I++ +S +
Sbjct: 1470 QAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSL 1529
Query: 729 --ENCFSKHGSRFAET-----KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD 781
F + + K +VI G V++ KNPC PGDVR L+AVD L HL +
Sbjct: 1530 PPNTVFVQLEEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHLRN 1589
Query: 782 CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---PPSKKSCPPMECTPAEAKP--- 835
LVF KGD P+ E SGSDLDGD Y+ +D++LI S+ + +E K
Sbjct: 1590 VLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVSNNDKKANV 1649
Query: 836 ----------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
+ + Q LG++ ++H+ +D +YGA + I ++K +D PKTG
Sbjct: 1650 FNDPFALSSMYSTNAERQELGKLYHSHLAISD--QYGANHKYSIQISKECFKEIDYPKTG 1707
Query: 886 KIVTMPS----HLKPKKYPDFMEIEEYQT--YKSNKILGRLYRQIKGAYDENISVSSEVD 939
T+P L+ YP +M+ E Y+S KI+G++Y QI D+ + + D
Sbjct: 1708 IHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQI----DQLVYIG---D 1760
Query: 940 INPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSM----- 994
P +I D V G + A+ Y Q++ LL Y+ +E I +
Sbjct: 1761 FLP-NISLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLDQGFI 1819
Query: 995 -PKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVT 1053
K + +GE++ F EF + F + + + L + N+ E+K SAWY V
Sbjct: 1820 SDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNI--EKKVSAWYHVA 1877
Query: 1054 YHREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
Y DL + + L F WIA +
Sbjct: 1878 YS--------DLKDDRA------LGFYWIARSF 1896
>gi|429964430|gb|ELA46428.1| hypothetical protein VCUG_02106 [Vavraia culicis 'floridensis']
Length = 2289
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 180/586 (30%), Positives = 273/586 (46%), Gaps = 128/586 (21%)
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD----IKNWMGEFTAKN 511
++ I+S+G + R Y F+A SS+QLR +SAWF S + +VL ++NWMG N
Sbjct: 790 IREIMSNGITI-DRPYYFVATSSSQLRANSAWFISPYRKNNVLIGSDYVRNWMGVINCDN 848
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV--------------------- 550
I KY R+GL SST EI + ++ +G V
Sbjct: 849 IGKYMIRVGLGLSSTFNMFEIVDYVEEDDIVSYGNSGSVSYGNSGSVSTSNSGSVSTSSN 908
Query: 551 ----------------------------FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
++DGIG+I+ +A VA+ LKL + P+A+Q
Sbjct: 909 KNNNSSTSNSSTINTTNAITNNVNDEYVWTDGIGRISNRVADMVAKKLKL--TSTPTAFQ 966
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS 642
IR+AGYKGV+ D + LR SM+KFKS + LE+ S+++ +LNRQII +L
Sbjct: 967 IRFAGYKGVLVRANIPHD---LMLRKSMRKFKSTYNVLEVVSYSQSIECYLNRQIIMILE 1023
Query: 643 TLNVSDEIFWTVQ----ASMASKLNLMLVA-----SDVAF----------EVLTASCAEQ 683
L V F +Q M +N L+ S VA + CA+
Sbjct: 1024 GLGVPKHNFICLQNEYLMHMYRAINHSLIGKYCRISGVALVDRMSGALLGRLFREMCAKG 1083
Query: 684 ----GNTAAIML---SAGFKPQTEPHL--------------QGMLTYELG--ELKECQCF 720
N +M G + E L + M + E+G E+++ + F
Sbjct: 1084 RIFVKNGIVLMGVIDEEGVLGENEVFLRIYEDDGDVSGGRSKRMRSNEIGAEEMRKKELF 1143
Query: 721 -----------IQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
+ ++SS ++ + G + V G ++AKNPCL PGD+R ++
Sbjct: 1144 ERALSVVDRSGVGTADSSADDINTSTGGGVLRDDGVVV--GGAIVAKNPCLHPGDIRKVQ 1201
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT 829
V + EL H + LVF +KG RP N SGSDLDGDLY+V+WD LIPP + + +
Sbjct: 1202 CVYKKELMHYKNVLVFSKKGRRPVFNMCSGSDLDGDLYFVSWDARLIPPIEHFPQNYQSS 1261
Query: 830 PAEAKP----------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAV 879
+K T LG+I NAH+V++D +G D + LA L + V
Sbjct: 1262 SYLSKEHIVAQDMVNFFTRFAKEDELGKISNAHLVYSD--VHGITDPQALKLAYLFSMGV 1319
Query: 880 DSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK 925
D PKTG I +P +L+P +YPDFM E ++Y+S +++G +YR+++
Sbjct: 1320 DFPKTGYIARLPQNLEPYEYPDFM--ERMRSYESVRVMGMMYRRVQ 1363
>gi|303322200|ref|XP_003071093.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110792|gb|EER28948.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1195
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 225/804 (27%), Positives = 352/804 (43%), Gaps = 137/804 (17%)
Query: 380 PKNIDDIAEVRRLVITPTKAYWF---LESK--------DVADRFLRVTFMDEGLQTMNAN 428
P N+ +V R +TP+ Y + +E+K D + FLRV F+DE +
Sbjct: 411 PNNV----KVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPV--- 463
Query: 429 VLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
Y P + N F + R K +L G + G +SFL FS + LR + WF
Sbjct: 464 ----YFDP--QASLHNIFHE------RFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWF 511
Query: 489 FSKVGETS-----VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELP 542
+ +S I +G F+ + AK AAR+G FS T ++ IP V P
Sbjct: 512 VAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEP 571
Query: 543 DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
D+KRNG VFSDG+G +P L ++ L P+ +QIR+AG KG+V+ + G
Sbjct: 572 DVKRNGRVFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSL-DTRLKGE 630
Query: 603 RMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA---- 656
++ LR SM KF + ++E+C S R P +LN QII +L L V F +Q+
Sbjct: 631 QLRLRESMVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIE 690
Query: 657 ------SMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLT-- 708
ASK + L S +A EV E I+ GF +P L+ ++
Sbjct: 691 RLLSVGKSASKTSQFLEESSIAKEVRVPWLIE------ILHGLGFHHDQDPFLRSVVQLA 744
Query: 709 --YELGELKECQCFIQVSESSL------ENCFSKHGSRFA-----ETKKLQVINGFVVIA 755
+++ +LK + I+V E+ E + G F E + ++ V++
Sbjct: 745 IFFKMRDLK-YRARIRVPEAVTLYGIMDETGYLNEGEIFCTFLNEEGGREILVRDQVIVT 803
Query: 756 KNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
+ P L PGDV+ +AVD PE L L +C++F Q G R + SG DLDGDLY V +D
Sbjct: 804 RAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYD 863
Query: 813 ENLIPPSKKSCPPMECTPAEAKPLTCHV-------------NHQNLGQICNAHVVHADRS 859
E L+PP + PP E K L V LG+I H AD+
Sbjct: 864 ERLMPPC--TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQR 921
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM--------------- 903
G D +C+LLA+L + AVD K+G V + K P+ YPDFM
Sbjct: 922 PAGTLDRDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPSPRIKIADSIEVV 981
Query: 904 EIEEY---------------QTYKSNKILGRLYRQI-KGAYDENISVSSEVD------IN 941
E E+Y + YKSN+ILG +YR I + + + +S++ +N
Sbjct: 982 EEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLN 1041
Query: 942 PVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVN--RKEFRHIWSMPKYNS 999
+ + ++ E D R K Y+ +L ++ QY+ + + +
Sbjct: 1042 AIWDYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSIL 1101
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWV 1059
+ + R K + + R+E++++ S D+ + E+ + ++ + +
Sbjct: 1102 GQNSKQSRRDKEASQSMREEYQELVNFTISMLTDRDSGGDDSLERSIACFWHALHGKYSG 1161
Query: 1060 KKSLDLLEQGSARSVVLLSFAWIA 1083
+ S + V LLSF WIA
Sbjct: 1162 SR--------SQKKVALLSFPWIA 1177
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 190/362 (52%), Gaps = 32/362 (8%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
++ G VV+AKNPCL PGDVRIL AVD P LHH+ DC+VFPQKG RPH +E SGSDLDGD+
Sbjct: 582 ILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDI 641
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHV 853
Y+V WD +LIPP + PM+ TPA K L T ++ + LG I NAH
Sbjct: 642 YFVCWDHDLIPP--RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHT 699
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKS 913
V AD+ A C LAKL + A++ PKTG +P HL K+YPDFME TY+S
Sbjct: 700 VFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYES 759
Query: 914 NKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQ 973
++G+L+R++K N V S + YD D+EV G D+ DA K YD +
Sbjct: 760 QSVIGKLFREVKDVAPHNYDVRSFTRDVAMQ-SYDADMEVDGFEDYVRDAFYYKSQYDFK 818
Query: 974 LNGLLGQYNVNRKE---FRHIWSMPK-YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNS 1029
L L+ + + I M K ++ RK E + + + RKE R F KM S
Sbjct: 819 LGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEA---IALAVRSLRKEARTWFNKMGS 875
Query: 1030 DFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLAR 1089
++ + ASAWY VTYH + +G LSF W D L +
Sbjct: 876 GTYAGADDVYAI----ASAWYHVTYHPYY----WGCYNEGMYHD-HFLSFPWCVYDKLIQ 926
Query: 1090 IK 1091
IK
Sbjct: 927 IK 928
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 146/449 (32%), Positives = 234/449 (52%), Gaps = 65/449 (14%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQ----------- 263
+L+ L +P+I + D+ L F DD W+R DF+PS +IGQ
Sbjct: 135 LLIQLLDAPQI----YEKDVSALSYFKETPDDQ-WVREIDFTPSCSIGQSSALCLELPHG 189
Query: 264 ------CNSKQRVQEDCLSQPVTIREEPDFE-----VPVEDPFFCMHYKEGVSFEIMFLV 312
C + R +E+ + + F VP+ P + F+I+F +
Sbjct: 190 SQLPNFCENFARYKEN--DRKFILESGASFSGNLHLVPIVGP----PQGSNLPFKILFKI 243
Query: 313 NAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQECL 370
N ++ G L+ L +FF + Q + I AL+ +Y + ++ L +
Sbjct: 244 NTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY 303
Query: 371 IKNPKLNEGPKNID-DIAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFM 418
I ++D + VRR+ ITP K Y+ +V++R FLRV+F+
Sbjct: 304 ISKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFL 363
Query: 419 DEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSS 478
DE + +++ V+S + SN ++TGV++R+ SIL +G + +++ FLA SS
Sbjct: 364 DENSEKIHSTVISPRM--------SNE-GRRTGVYRRILSILQNGIVIGDKKFDFLAVSS 414
Query: 479 NQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEV 537
+QLRD+SAW F+ + DI++ MG+F+ +N+AKYAAR+G FSS+ T+++ E+
Sbjct: 415 SQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEI 474
Query: 538 DHELPDIK--RNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVA 593
+ +PDI+ R+G YVFSDGIGKI+ +LA VA S PSA+QIRY GYKGVVA
Sbjct: 475 E-IIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNS-TPSAFQIRYGGYKGVVA 532
Query: 594 CWPAKDDGIRMSLRGSMKKFKSCHTSLEI 622
P ++SLR SM K++S +T+L++
Sbjct: 533 VDPTSSR--KLSLRKSMFKYESENTNLDL 559
>gi|290989465|ref|XP_002677358.1| predicted protein [Naegleria gruberi]
gi|284090965|gb|EFC44614.1| predicted protein [Naegleria gruberi]
Length = 913
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 199/629 (31%), Positives = 300/629 (47%), Gaps = 118/629 (18%)
Query: 384 DDIAEVRRLVITPTKAYWF---LES--------KDVADRFLRVTFMDEGLQTMNANVLSY 432
D++ E+R+++ITPT +F LES K DRFLRVTF DEGL ++A
Sbjct: 304 DNMFEIRKVMITPTGIKYFPKILESGNRVLRKYKQYEDRFLRVTFCDEGLNRVSA----- 358
Query: 433 YVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV 492
+ T + R++ L++GF + R Y LA+S++QLR HS WF +
Sbjct: 359 --------------EKVTNMHPRLEEFLNNGFTIGNRHYEMLAYSNSQLRSHSCWFLNTE 404
Query: 493 G--ETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEV-DHELPDIKRNG 548
G E SV I +G+F+ K +AKYAAR+G CFS+T ++ EV D +I+RNG
Sbjct: 405 GIRELSVSSIIEGLGDFSDIKVMAKYAARIGQCFSNTFNGIKSEFIEVNDIVYREIERNG 464
Query: 549 ----YVFSDGIGKITPDLAMEVAQILKL---DGSPPPSAYQIRYAGYKGVVACWPAKDD- 600
V +DG G+++ A +V++ +K+ + PSA Q R GYKGVV D
Sbjct: 465 DIKENVLNDGCGRMSVSFAEQVSKQMKIRIHGKAYIPSALQFRLGGYKGVVVQDKDVADI 524
Query: 601 -GIRMSLRGSMKKFKSCHT-SLEICSWTRFQPGF--LNRQIITLLSTLNVSDEIFW---- 652
G + L S KFK + E+ ++++ +P F LNRQII LLS+ + D
Sbjct: 525 FGKDLVLTKSQNKFKDEKSDEFEMVAFSK-RPKFSSLNRQIIILLSSNGLPDSALMKFVD 583
Query: 653 ----TVQASMASKLNLMLVASDVAFEVLTASC-----AEQGNTAAIMLSAGFKPQTEPH- 702
T ++ KL++ + V V+ ++ +E + A +L++ K ++ H
Sbjct: 584 REIETWRSRTTKKLSIRKLLRKVWENVVGSNIKKVISSEYLDLKAQVLASQVKGMSQQHV 643
Query: 703 ------------------------------------LQGMLTYELGELKECQCFIQVSE- 725
L G++ + G L++ + F+Q+S
Sbjct: 644 EYFYNVDPLLCTLCDKILINQFSSLKTNLPVDKCSLLMGVVDF-YGVLEDDEVFVQLSSF 702
Query: 726 SSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV--DRPE-LHHLCDC 782
S E GS +AE +++G V + +NPCL PGDVR +AV DR L HL D
Sbjct: 703 ESYERDLYDPGS-YAEGG---IVSGNVFVTRNPCLHPGDVRKFKAVSDDRINVLKHLKDV 758
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI------PPSKKSCPPMECT-----PA 831
+VF QK + ++ SG DLDGDL+ V WD L+ P P+E A
Sbjct: 759 IVFSQKSKQSQASKMSGGDLDGDLFMVCWDPELLNFTEHKPMKHTQLKPLEKNDGFDYKA 818
Query: 832 EAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
L +V + NLG + H+ H D+S GA D+NC+ LA + VD KTG +P
Sbjct: 819 IRDFLKEYVVNDNLGVVAFMHMEHYDQSSKGALDQNCLDLADYHSHQVDYAKTGVRKALP 878
Query: 892 SHLKPKKYPDFMEIE-EYQTYKSNKILGR 919
L + P +M +TY S KI+G+
Sbjct: 879 MELVSEYRPHYMPKSFMKKTYHSTKIIGK 907
>gi|119196681|ref|XP_001248944.1| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1155
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 199/636 (31%), Positives = 289/636 (45%), Gaps = 120/636 (18%)
Query: 380 PKNIDDIAEVRRLVITPTKAYWF---LESK--------DVADRFLRVTFMDEGLQTMNAN 428
P N+ +V R +TP+ Y + +E+K D + FLRV F+DE +
Sbjct: 411 PNNV----KVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPV--- 463
Query: 429 VLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
Y P + N F + R K +L G + G +SFL FS + LR + WF
Sbjct: 464 ----YFDP--QASLHNIFHE------RFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWF 511
Query: 489 FSKVGETS-----VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELP 542
+ +S I +G F+ + AK AAR+G FS T ++ IP V P
Sbjct: 512 VAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEP 571
Query: 543 DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
D+KRNG VFSDG+G +P L ++ L P+ +QIR+AG KG+V+ + G
Sbjct: 572 DMKRNGRVFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSL-DTRLKGE 630
Query: 603 RMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA---- 656
++ LR SM KF + ++E+C S R P +LN QII +L L V F +Q+
Sbjct: 631 QLRLRESMVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIE 690
Query: 657 ------SMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLT-- 708
ASK + L S +A EV E I+ GF +P L+ ++
Sbjct: 691 RLLSVGKSASKTSQFLEESSIAKEVRVPWLIE------ILHGLGFHHDQDPFLRSVVQLA 744
Query: 709 --YELGELKECQCFIQVSESSL------ENCFSKHGSRFA-----ETKKLQVINGFVVIA 755
+++ +LK + I+V E+ E + G F E + ++ V++
Sbjct: 745 IFFKMRDLK-YRARIRVPEAVTLYGIMDETGYLNEGEIFCTFLNEEGGREILVRDQVIVT 803
Query: 756 KNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
+ P L PGDV+ +AVD PE L L +C++F Q G R + SG DLDGDLY V +D
Sbjct: 804 RAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYD 863
Query: 813 ENLIPPSKKSCPPMECTPAEAKPLTCHV-------------NHQNLGQICNAHVVHADRS 859
E L+PP + PP E K L V LG+I H AD+
Sbjct: 864 ERLMPPC--TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQR 921
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM--------------- 903
G D++C+LLA+L + AVD K+G V + K P+ YPDFM
Sbjct: 922 PAGTLDQDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPSPRIKIADSIEVV 981
Query: 904 EIEEY---------------QTYKSNKILGRLYRQI 924
E E+Y + YKSN+ILG +YR I
Sbjct: 982 EEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNI 1017
>gi|397600982|gb|EJK57779.1| hypothetical protein THAOC_22138 [Thalassiosira oceanica]
Length = 1292
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 182/572 (31%), Positives = 277/572 (48%), Gaps = 73/572 (12%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
V RL++TPT+ ++++R +R D + + +V + D S+
Sbjct: 449 VPRLLLTPTRLVVTGFHFEISNRMIRKFIQDHNFMSES------FVRLTLGDENSDKLYS 502
Query: 449 ---KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMG 505
V +R+K + G ++ G+ Y FLA+SS+QL++ S W S +V ++ MG
Sbjct: 503 DDITVQVEERIKEFVLGGIDIVGKHYKFLAYSSSQLKEQSLWLVSPERGWTVDGMRESMG 562
Query: 506 EFT-AKNIAKYAARMGLCFSSTHATVEIPPTE--------------VDHELPDI--KRNG 548
+F+ K +KYAAR+G CFS+T + E + V +L DI + NG
Sbjct: 563 DFSMCKTPSKYAARIGQCFSTTVSVAEGSGSRNIFSAMDKTTDWLRVKDDLEDITSRWNG 622
Query: 549 YVF--SDGIGKITPDLAMEVAQILKLDGSPPP--SAYQIRYAGYKGVVACWPAKD----- 599
SDG+G I ++ + + SA QIR G KGV+ W
Sbjct: 623 LEMQHSDGVGLIRKEVLQNAIKQVPFGPRDKTHISAIQIRLGGAKGVLVGWSFDQLNHLK 682
Query: 600 DGIR---MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA 656
+ IR + LR S KF + + SLE+ + P FLNR ++ L S L + D IF +Q
Sbjct: 683 NEIRNFDICLRPSQVKFSAPYMSLEVVNLATRIPYFLNRNVVLLGSHLGIQDGIFLCLQK 742
Query: 657 SMASKLNLMLVASDVAFEVLTASCAEQGN---TAAIMLSAGFKPQTEPHLQGML----TY 709
M LNL+L +D A L + + T ML AG KP +P L L +
Sbjct: 743 EMIQDLNLLLYDADHALRFLPSLSGPDCSLVSTLMSMLLAGMKPNIDPFLFSCLHTTRAH 802
Query: 710 ELGEL-KECQCFIQVSESSLENCFSKHG-----SRFAETK----KLQVINGFVVIAKNPC 759
+ L K+ + F++ + L C + G S F + K + I G V++ K+P
Sbjct: 803 HMMTLRKKARIFVK-DGAVLMGCLDETGLVPENSVFIQVKHDNGSFKPIEGKVMVTKHPV 861
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
+ PGD+R+LEAV+ PEL ++ D ++F + G RP ++ SGSDLDGDL+ VTWD+ L
Sbjct: 862 MHPGDMRMLEAVNIPELKNMKDIIIFSRHGSRPEADKMSGSDLDGDLFAVTWDKRLF--L 919
Query: 820 KKSCPPMECTP-----AEAKPL---------TCHVNHQNLGQICNAHVVHADRSEYGAFD 865
++S PME +P E P+ H + NLG+I + HA ++ GA
Sbjct: 920 RQSLDPMEYSPPPTLGQETPPINDSSLLAHFVGHAKNDNLGRISMLWLDHA-VTKGGAGC 978
Query: 866 ENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
C+ LAKLA+ AVD PK+G T+P LK K
Sbjct: 979 HECVRLAKLASIAVDFPKSGISATLPDDLKIK 1010
>gi|17506499|ref|NP_492132.1| Protein EGO-1 [Caenorhabditis elegans]
gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans]
gi|14530420|emb|CAB01701.2| Protein EGO-1 [Caenorhabditis elegans]
Length = 1632
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 219/862 (25%), Positives = 355/862 (41%), Gaps = 208/862 (24%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + +R LR +TF D+ Q M N S
Sbjct: 491 VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTS------ 544
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS- 496
T + K V L +G + GR + +L S++Q+RD+ A+F K +
Sbjct: 545 ------------TMLEKTVNQYLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592
Query: 497 ------------------VLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHAT---VEIPP 534
+ + +G F T NI K AR+G CF+ + + +E
Sbjct: 593 REYERIYQIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCT 652
Query: 535 TEVDHELP---DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
++L ++K + Y FSDG+G ++ A V++++ G PS +Q R+ G KGV
Sbjct: 653 YMTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDF-GKGVPSCFQFRFRGMKGV 711
Query: 592 VACWPAKDDGIRMSL-------------------RGSMKKF---KSCHTSLEICSWTRFQ 629
++ P D+ + S+ R S KF + +EI ++
Sbjct: 712 ISIEPLLDNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPV 771
Query: 630 PGFLNRQIITLLSTLN----------VSDEIFWTVQASMASKLNLMLVASDVAF-EVLTA 678
P LN+ I +L ++ V++ I + M S M+ D F
Sbjct: 772 PVALNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMV---DETFCRNRLK 828
Query: 679 SCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY----------------------------- 709
+ + + + GF +EP + ++
Sbjct: 829 ELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPCDLGRSMLGVV 888
Query: 710 -ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRIL 768
E G L+ Q F+Q +++ K+ +R QV+ G V++ KNPC+ GDVRI
Sbjct: 889 DETGRLQYGQIFVQYTKNLALKLPPKNAAR-------QVLTGTVLLTKNPCIVAGDVRIF 941
Query: 769 EAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC 828
EAVD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y + WD+ L+ K+ P +
Sbjct: 942 EAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDPYDF 999
Query: 829 TPAEAKP--------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKL 874
T + K ++ ++GQI N+H+ ++D +YG C+ LAK
Sbjct: 1000 TSEKQKASFKEDEIDDLMREFYVKYLKLDSVGQISNSHLHNSD--QYGLNARVCMDLAKK 1057
Query: 875 AATAVDSPKTGKIVTMPSHLKPK-----------------KYPDF-MEIEEYQTYKSNKI 916
AVD K+G+ P L+ K + PD+ M + Y S ++
Sbjct: 1058 NCQAVDFTKSGQ---PPDELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVSPRL 1114
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNG 976
G+L+R+ K A D+ + +S E D V+I D +++ G ++ A A+N Y+ QL
Sbjct: 1115 CGKLFREFK-AIDDVLKISEERD-EQVEISIDETIKIDGYTEYMASAKNDLARYNAQLRS 1172
Query: 977 LLGQYNV---------------NRKEFRHIWSMPKYNSRKQGE--LQERLKHSYSAFRKE 1019
++ Y + NR + M +N+ + E L K F +E
Sbjct: 1173 MMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFFNTNQMIETKLTNLFKKYREIFFEE 1232
Query: 1020 FRQVFEKMNSDFELSDNEKNVLYEQ----------KASAWYQVTYHREWVKKSLDLLEQG 1069
F +E F + N+L Q KA AWY+ Y E
Sbjct: 1233 FEGGWEGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYRACYE-----------EAR 1281
Query: 1070 SARSVVLLSFAWIANDYLARIK 1091
R LSFAW+A D +A++K
Sbjct: 1282 ITRENKKLSFAWLAYDVIAKVK 1303
>gi|17508365|ref|NP_493057.1| Protein RRF-2 [Caenorhabditis elegans]
gi|13655331|emb|CAC35914.1| Protein RRF-2 [Caenorhabditis elegans]
Length = 1579
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 237/886 (26%), Positives = 378/886 (42%), Gaps = 202/886 (22%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + +R LR VTF D+ + M AN +
Sbjct: 450 VRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELL--- 506
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET-- 495
DI VK L G + R + FL SS+Q+RD+ A+F K +
Sbjct: 507 --DIC-------------VKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 496 ------------SVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHAT-VEIPPTE--VDH 539
++ ++N +G F +NI K AR+G CF+ + T V + P + H
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTH 611
Query: 540 ELPDIKR-NG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWP 596
+L + NG Y FSDG+G ++ + A EV++++ G PS +Q RY G KGV+A P
Sbjct: 612 DLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSF-GRSVPSCFQFRYRGMKGVLAIDP 670
Query: 597 AKDD--------GIRMS------LRGSMKKFKSCHT---SLEICSWTRFQPGFLNRQIIT 639
D GI +S R S KF+ +E+ ++ LN+ +I
Sbjct: 671 LLDKERNWQEKHGISLSKNIKCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLIN 730
Query: 640 LLSTLNVSDEIFWTVQASMASKLNLMLVASDVAF--EVLTASC--------AEQGNTAAI 689
+L VS+ + S++ ++ ++F ++ +C + + +
Sbjct: 731 ILD--QVSEMQSLECHRRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDIDYL 788
Query: 690 MLSAGFKPQTEPHLQGMLTY------------------------------ELGELKECQC 719
GF EP + ++ E G L+ Q
Sbjct: 789 RTIWGFTLSNEPFFRSLVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQYGQV 848
Query: 720 FIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
F+Q +++ + +R + +++ G V++ KNP + PGDVRI EAVD PELHHL
Sbjct: 849 FVQYTKNHRNILPPRDSNR--KVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPELHHL 906
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS---------KKSCPPMECTP 830
CD +VFPQ G RPH +E +GSDLDGD Y V WD+ L+ +K+ E
Sbjct: 907 CDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNEEAFDFAVEKNLQTYEWED 966
Query: 831 AEAKPLTCHVNHQN---LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK- 886
+ +V + +G I N+H+ ++D +YG C+ LAK + AVD K+GK
Sbjct: 967 IDDLMRDVYVEYLKKDLVGLIANSHLHNSD--QYGLTSRVCMNLAKKSCQAVDFSKSGKP 1024
Query: 887 -------------IVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYRQIKGAYDENI 932
M + ++ PD+ ++ Y S ++ G+L+R+ +G +N
Sbjct: 1025 PDELQTTWKTDDATGEMIPPERAERVPDYHVGSDHMPKYVSPRLCGKLFREFQGI--DNA 1082
Query: 933 SVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK------ 986
SE I D + V G ++ DA+ Q SY+GQL + Y + +
Sbjct: 1083 MKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEIMSG 1142
Query: 987 ---EFRHIWS------MPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFE----- 1032
E R+ S M YN+ + E + +A +FR +F + F+
Sbjct: 1143 CIIEMRNRISDSDQDDMSFYNTNRMIETK------MTALVSKFRTIFFQQFGGFQEVCTL 1196
Query: 1033 LSD--NEKNVL----------YEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFA 1080
L D NE N +KA AWY+ Y E K S R LSFA
Sbjct: 1197 LPDAYNESNFFNFRCENPNEEIRKKAVAWYRACY--ECAK---------STREPRKLSFA 1245
Query: 1081 WIANDYLARIK----IKCQEMANIGKSKPV-----NNLARYVADRI 1117
WIA D +A+IK ++ EM NIG + P+ ++ ARY+ D +
Sbjct: 1246 WIAYDVIAKIKETKVLENVEM-NIGGANPMYTYLEHHRARYINDHV 1290
>gi|70608336|gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
benthamiana]
Length = 172
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 127/172 (73%), Gaps = 29/172 (16%)
Query: 670 DVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-------------------- 709
DVAF+V+TASCAE GNTAAIMLSAGFKPQ+EPHL+GML+
Sbjct: 1 DVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSG 60
Query: 710 --------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCL 760
ELGEL++ QCFIQVS SLE+CF KHG F++ KK LQVI G V+IAKNPCL
Sbjct: 61 RWLMGCLDELGELEQGQCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPCL 120
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
PGDVRILEAVD P LHHL DCLVFPQKGDRPH ++ASGSDLDGDLY+VTWD
Sbjct: 121 HPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHPDQASGSDLDGDLYFVTWD 172
>gi|241244478|ref|XP_002402311.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215496312|gb|EEC05952.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 519
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 174/541 (32%), Positives = 261/541 (48%), Gaps = 81/541 (14%)
Query: 500 IKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD-------IKRNGYVF 551
I++WMG F N+AK ARMG CFSST V + EV +PD + R YVF
Sbjct: 1 IRDWMGRFDGIPNVAKRMARMGQCFSSTEQAVLVRKHEV-RMVPDMEGGAHPVSRKPYVF 59
Query: 552 SDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMK 611
SDG+G ++ LA EV +++KL P SA QIRYAG KG++ P + + LR SM+
Sbjct: 60 SDGVGMMSVPLAQEVYKVMKLKERP--SAIQIRYAGAKGMLCINPELPNQKLLYLRPSMQ 117
Query: 612 KFKSCHTS--LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQAS---MASKLNLML 666
KF C +S LE+ + R++ T L ++ D Q S +L L
Sbjct: 118 KF-PCTSSDYLEVVKVS------APRKLHTPLGRVHYLDSDRTIHQVSGEYHLEELGLGC 170
Query: 667 VASD--------VAFEVLT------------ASCA-EQGNTAAIMLSAGFKPQTEPHL-- 703
+ D A VLT SC+ N ++ +AG + +T L
Sbjct: 171 IKDDAIMSRMVSTAMAVLTKPRYIISSCDIMVSCSCTMFNLVVVLHAAGLRYKTRIALPV 230
Query: 704 ---QGMLTY--ELGELKECQCFIQVSESSLENCFSKHGSRFAETK--KLQVINGFVVIAK 756
+ ML G L+ Q F+Q SE G+R ++ K +VI G V++ K
Sbjct: 231 DRARNMLGVVDTTGVLRYGQVFVQCSEM---------GARASQQGPPKCRVITGQVLVTK 281
Query: 757 NPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
PCL PGDVR A+D P LHH+ DC+VFP +G RPH +E +GSDLDGD Y V W+ +L+
Sbjct: 282 CPCLHPGDVRKFTAIDEPRLHHVVDCIVFPGQGHRPHPDEMAGSDLDGDEYIVIWEPSLL 341
Query: 817 PPSKKSCPPMECTPAEAKP-------------LTCHVNHQNLGQICNAHVVHADRSEYGA 863
P PM + +P L ++ + ++G + NAH+ AD+ E G
Sbjct: 342 FPGYNK-QPMNFSDRNPEPERGEITINDMIQFLCNYIKNDSIGILSNAHLAWADQEEEGI 400
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYR 922
+ C+ +A+ + +D K+G+ + +P YPDFME ++ +Y+S+++LG LYR
Sbjct: 401 YSRRCLAIAEKISICLDFAKSGRTAYLRREERPMFYPDFMEKGSHKISYRSDRVLGLLYR 460
Query: 923 QIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYN 982
+ + + VD L+VPG + + A Y+ +L +L QY
Sbjct: 461 TCRSLE----AAVGSLGHRHVDAGRCLALDVPGWQRYESAALAALADYNTRLRRILNQYG 516
Query: 983 V 983
+
Sbjct: 517 I 517
>gi|341891711|gb|EGT47646.1| CBN-EGO-1 protein [Caenorhabditis brenneri]
Length = 1632
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 221/861 (25%), Positives = 362/861 (42%), Gaps = 206/861 (23%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + +R LR +TF D+ Q M N S
Sbjct: 491 VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTS------ 544
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS- 496
T + K V + L G + GR + +L S++Q+RD+ A+F K +
Sbjct: 545 ------------TLLEKTVNNYLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592
Query: 497 ------------------VLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHAT---VEIPP 534
+ + +G F T NI K AR+G CF+ + + ++
Sbjct: 593 REYEAIHHVKPPITYNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCT 652
Query: 535 TEVDHELP---DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
++L +IKR+ Y FSDG+G ++ A V+Q++ G PS +Q R+ G KGV
Sbjct: 653 YMTMYDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDF-GKGVPSCFQFRFRGMKGV 711
Query: 592 VACWP----------------AKDD---GIRMSLRGSMKKF---KSCHTSLEICSWTRFQ 629
+A P DD G+ R S KF + +EI ++
Sbjct: 712 IAVEPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPV 771
Query: 630 PGFLNRQIITLLSTLN--VSDEIFWTVQASMASKLN--LMLVASDVAFEVLTAS----CA 681
P LN+ I +L ++ S E V + L+ ++L A + E +
Sbjct: 772 PVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETFCRNRLKELP 831
Query: 682 EQGNTAAIMLSAGFKPQTEPHLQGMLTY------------------------------EL 711
+ + + + GF +EP + ++ E
Sbjct: 832 RRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGRSMLGVVDET 891
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
G L+ Q F+Q +++ K+ +R QV+ G V++ KNPC+ GDVRI EAV
Sbjct: 892 GRLQYGQIFVQYTKNLALKLPPKNAAR-------QVLTGTVLLTKNPCIVAGDVRIFEAV 944
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPA 831
D PELHH+CD +VFPQ G RPH +E +GSDLDGD Y + WD+ L+ K+ P + T
Sbjct: 945 DIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDPFDFTSE 1002
Query: 832 EAKP--------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
+ K ++ ++G I N+H+ ++D +YG C+ LAK
Sbjct: 1003 KQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSD--QYGLNARVCMDLAKKNCQ 1060
Query: 878 AVDSPKTGKIVTMPSHLKPK-----------------KYPDF-MEIEEYQTYKSNKILGR 919
AVD K+G+ P L+ K + PD+ M + Y S ++ G+
Sbjct: 1061 AVDFTKSGQ---PPDELERKWRKDEETGEMIPPERCERVPDYHMGNDHTPMYVSPRLCGK 1117
Query: 920 LYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLG 979
L+R+ K A D+ + +S E D V+I D ++ + G + AR++ Y+ QL ++
Sbjct: 1118 LFREFK-AIDDVLKISEERD-EQVEISIDENIMMDGYESYMHSARDELSRYNAQLRSMME 1175
Query: 980 QYNV---------------NRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVF 1024
Y + NR + M YN+ + ++ ++ + + +R+ F + F
Sbjct: 1176 NYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQM--IETKVTNLFKKYREHFFEEF 1233
Query: 1025 E-KMNSDFELSD---NEKNVLYEQ----------KASAWYQVTYHREWVKKSLDLLEQGS 1070
E ++ E S ++ N+L Q KA AWY+ Y E
Sbjct: 1234 EGGWEANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYRACYE-----------EARI 1282
Query: 1071 ARSVVLLSFAWIANDYLARIK 1091
R LSFAWIA D +A +K
Sbjct: 1283 TRENKKLSFAWIAFDVIAMVK 1303
>gi|384499712|gb|EIE90203.1| hypothetical protein RO3G_14914 [Rhizopus delemar RA 99-880]
Length = 595
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 156/487 (32%), Positives = 236/487 (48%), Gaps = 81/487 (16%)
Query: 656 ASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS---AGFKPQTEPHLQGMLTY--- 709
+M +++ +L + A VL + E G TA +M S AGF + +P+++ +L
Sbjct: 2 GNMLREIDKILARPEEAIRVLLNNADEAG-TAHMMASIIQAGFLERGDPYIKNLLNLFRV 60
Query: 710 -------------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKK 744
E G L E + +IQV ++S
Sbjct: 61 NVLKELKKKAKILVPQGAFLLGVMDETGTLDEGEVYIQVWDNSHSGTMK----------- 109
Query: 745 LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDG 804
QVI G + +NPC PGDVR++ AVDRP L HL + +VFP KG R + SG DLDG
Sbjct: 110 -QVITGECAVFRNPCFHPGDVRVVTAVDRPNLSHLVNVVVFPAKGYRDIPSMCSGGDLDG 168
Query: 805 DLYYVTWDENLIPPSKKSCPPMECTPAEAKPL------------TCHVNHQNLGQICNAH 852
D Y + WD LIP ++K PM+ T ++ + + ++N+ NLGQI NAH
Sbjct: 169 DDYTIFWDPKLIP-TRKDVAPMDYTASDPRKVEDVKIRDIQRFFVNYINNDNLGQIANAH 227
Query: 853 VVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYK 912
+ AD SE GA D CILLA+L + AVD PK+GK T+ L + +PDFM+ ++ ++Y
Sbjct: 228 LATADFSEKGAMDGRCILLAQLHSEAVDFPKSGKPATLSEDLIVRTFPDFMQKKDKESYA 287
Query: 913 SNKILGRLYRQI-KGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYD 971
S K+LG ++R I K Y +S +E + YDT + + G + +AR + Y+
Sbjct: 288 SKKVLGHIFRSIDKSDYKNYMSKLTEEAV------YDTRMHLSGMAYYIGEARTLRRDYN 341
Query: 972 GQLNGLLGQYNVNRKEFRHIWS------MPKYNSRKQGELQERLKHSYSAFRKEFRQVFE 1025
L L+ Q V + I S + K S+ + E + + +F+ +R+ FE
Sbjct: 342 RDLLALMNQNGVQTEA--EIMSGYIIKWLKKGKSKTRYEQHDSTMKAIKSFKDLWRKEFE 399
Query: 1026 K--MNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIA 1083
K M+ + D + KA+AWY VTYH ++ D EQG LSF W+
Sbjct: 400 KEFMDDTQKTVDPAHRASMDAKAAAWYYVTYHPS--ERQRDFSEQGG-----FLSFPWVI 452
Query: 1084 NDYLARI 1090
+DY+ I
Sbjct: 453 HDYVCEI 459
>gi|224148789|ref|XP_002336714.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
gi|222836572|gb|EEE74979.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
Length = 196
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 135/171 (78%), Gaps = 4/171 (2%)
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE 906
+I +HVVHAD SEYGA DE C+ LA+LAAT+VD PKTGKIV+MPS LKPK YPDFM E
Sbjct: 24 KIPKSHVVHADLSEYGALDEKCLTLAELAATSVDFPKTGKIVSMPSDLKPKIYPDFMGKE 83
Query: 907 EYQTYKSNKILGRLYRQIK-GAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARN 965
E+Q+YKS KILGRLYRQIK D++++ SSE++ DI YD DLEVPG DF +DA +
Sbjct: 84 EHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVPGVTDFISDAWD 143
Query: 966 QKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSY 1013
QKCSYDGQLNGLL QY V R+E H+WSMPK +SRKQG+L+ERLKHSY
Sbjct: 144 QKCSYDGQLNGLLAQYKVKREEEVVTWHVWSMPKGSSRKQGDLKERLKHSY 194
>gi|393904650|gb|EJD73758.1| RNA dependent RNA polymerase [Loa loa]
Length = 1022
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 207/756 (27%), Positives = 335/756 (44%), Gaps = 168/756 (22%)
Query: 481 LRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFS-STHATVEIPPTEVDH 539
+RD+ +F+ I+ +G+F NI K +RMG CF+ + TV + + +
Sbjct: 1 MRDNGCYFYDDGKGGQAHKIREQLGKFDRCNIPKMMSRMGQCFTQAKRCTVTLKRHKYNK 60
Query: 540 ELP-----DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVAC 594
D + Y+FSDG GK++ + A ++A + L G+ PS YQIR+ G KGV++
Sbjct: 61 TYDVIGGRDTNQAFYIFSDGAGKVSKEFAEKIALDIGL-GTSVPSCYQIRHRGIKGVLSV 119
Query: 595 WPAKD------------DGIRMS---------LRGSMKKFKSCHTS-LEICSWTRFQPGF 632
P+ D D +M+ R S KFK+ +EI ++
Sbjct: 120 DPSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVC 179
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTAS---CAEQ------ 683
LNR +I++L VS ++V + +++ +L + S C E+
Sbjct: 180 LNRPMISILD--QVSGMQGFSVHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPW 237
Query: 684 -GNTAAIMLSAGFKPQTEPHLQGMLTY------------------------------ELG 712
N + + L+ GF EP + +L E G
Sbjct: 238 RVNVSRLTLARGFALTQEPFFRSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETG 297
Query: 713 ELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVD 772
+L+ Q F+Q + S SK ++ ++ G V++ KNPC+ GDVR+ EAVD
Sbjct: 298 QLQWGQVFVQCTRSIWLKTPSKSAAKI-------ILVGKVMLTKNPCIVAGDVRVFEAVD 350
Query: 773 RPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE 832
PELHHL D +VFPQ G RPH +E +GSDLDGD Y V WD L+ + PP++ T +
Sbjct: 351 IPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDPELMFEHNE--PPLDFTKSA 408
Query: 833 A---------------KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
+ K ++ ++G I NA +V+AD YG E CI +A+ +
Sbjct: 409 SDNKIVEEEQVDLEMRKFFVNYIKQDSIGTISNAFLVNADL--YGITSEVCINIARKHSK 466
Query: 878 AVDSPKTGKIVTMPSHL----------------KPKKYPDFMEIEEYQTYKSNKILGRLY 921
AVD PKTG PS L + +++PDFM +Y S++++G+LY
Sbjct: 467 AVDFPKTG---NAPSPLTRQWTQGKNGNILPPERAERWPDFMCKNHEPSYISSRLVGQLY 523
Query: 922 RQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY 981
R+I+ D+ +++++ ++ V I D DLE PG + A+ Q SY + ++ Y
Sbjct: 524 RRIR-LLDDALNLTAAME-GSVTIMLDPDLEYPGWEQYQNVAKIQLDSYHSHIRSIMENY 581
Query: 982 NV---------------NRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRK----EFRQ 1022
+ NR R M YN+ +++++ + A+R EF
Sbjct: 582 GIEDEGQLFSGFISVIRNRISDRDTDDMSFYNTNHI--IEKKVSAVFRAYRHRFFDEFGG 639
Query: 1023 VFEKMNSDFELSDNEKNVLYE------------QKASAWYQVTYHREWVKKSLDLLEQGS 1070
E D++ DN+ E +KASA+Y + Y S+D
Sbjct: 640 FLESTLPDYD--DNQSGNAQERRICIHPSLDMKRKASAYYILCYR----NASMDT----- 688
Query: 1071 ARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPV 1106
S +LSF W+ D L +K QE+ +G++KP+
Sbjct: 689 --SYRILSFGWLVWDILCHVK---QEV-RLGRAKPI 718
>gi|312082346|ref|XP_003143407.1| RNA dependent RNA polymerase [Loa loa]
Length = 1312
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 236/945 (24%), Positives = 394/945 (41%), Gaps = 210/945 (22%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPV-FDAYEK 362
+SF + +L+ A++ +G + + QL L + R + + Y + + E+
Sbjct: 122 LSFGLEYLIAALLSRGAVVKDQL------LRSIESRNQFLMHVVDSYEQDEAITLEVLER 175
Query: 363 LKDVQECLIKNPKLNEGPKNI--------DDIAE------------VRRLVITPTKAYWF 402
L ++ + + P L NI D +AE VR+ VITPT+
Sbjct: 176 LINMVDEMKNIPPLISAFDNIHKSIFVKKDLLAEIHERSANEGFQRVRKAVITPTRMLLV 235
Query: 403 L-----------ESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTG 451
+ E + DR LR+ F D+ + N + Y+
Sbjct: 236 VPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLRRNKVGSYIIETT------------- 282
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKN 511
V + L G + + +LA S++Q+RD+ +FF+ + V I+ +G+F N
Sbjct: 283 ----VHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFNDGDDGRVGKIREKLGKFDRTN 338
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG------YVFSDGIGKITPDLAME 565
I K +RMG CF+ + + + + ++ D+ ++FSDG+GK++ D A
Sbjct: 339 IPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDSCGEPFIFSDGVGKLSEDFAER 398
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPA---------------------KDDGIRM 604
+A+ L L+ PS +Q R G KGV++ PA K + + +
Sbjct: 399 IAKDLGLNKC-VPSCFQFRLRGLKGVLSVDPALRQRRLWAECNDVEDKNRKTEKVNDLDV 457
Query: 605 SLRGSMKKFKSCHTSL-EICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
R S KF + + EI ++ P LNR I +L VSD + V + +++
Sbjct: 458 LFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILD--QVSDMQGFDVHRRIVHRIH 515
Query: 664 LML----------VASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY---- 709
+L + S+ A + N + L+ GF EP +G+L
Sbjct: 516 GLLDRQLLQLSDALMSENKCRERLAEFPRRINVQYLSLARGFTLTQEPFFRGLLIASVRF 575
Query: 710 --------------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETK 743
E G L+ Q F+Q + + SK ++
Sbjct: 576 TLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVFVQFTNNVSLKTPSKAAAK----- 630
Query: 744 KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
++ G V+I KNP + GDVR+ EA+D PEL HL D +VFPQ G RPHT+E +GSDLD
Sbjct: 631 --TIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHLVDVVVFPQHGPRPHTDEMAGSDLD 688
Query: 804 GDLYYVTWDENLI-----PP---SKKSCPP-----MECTPAEAKPLTCHVNHQNLGQICN 850
GD Y V WD+ ++ P SK PP E + ++ ++G I N
Sbjct: 689 GDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEEDEVVREMRRFYVKYIMQDSVGVIAN 748
Query: 851 AHVVHADRSEYGAFDENCILLAKLAATAVDSPKT----------------GKIVTMPSHL 894
A + ++D +G + C +A+ + +VD PKT GKI MP
Sbjct: 749 AFLANSDM--FGIASDICTSIAEKHSQSVDFPKTGWPPRPLVKEWSKGPDGKI--MPPE- 803
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVP 954
+P+++PDFM +Y S +++G+L+R+I+ +D + + V I D LE
Sbjct: 804 RPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLVHD--VLTITAVSEGHSQIVVDPLLEYH 861
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNV---------------NRKEFRHIWSMPKYNS 999
G + +A +Y + L+ Y + NR R M ++N+
Sbjct: 862 GWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGCFSKIRNRISDRDTDDMSQFNT 921
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFEKMNS------DFELSDNEK-------NVLYEQKA 1046
++++L + + +FR F F S DF D + + ++KA
Sbjct: 922 --NFFIEQKLTNIFMSFRSSFFAEFGDFMSCTEPDDDFHSKDMTERRYCKCPTMEMKKKA 979
Query: 1047 SAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
SA+Y V Y +K+++ + + LLSF WIA D LA IK
Sbjct: 980 SAYYIVCY-----RKAVNGIGER------LLSFPWIAWDILAEIK 1013
>gi|393908637|gb|EJD75145.1| CBR-RRF-1 protein [Loa loa]
Length = 1689
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 236/945 (24%), Positives = 394/945 (41%), Gaps = 210/945 (22%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPV-FDAYEK 362
+SF + +L+ A++ +G + + QL S + R + + Y + + E+
Sbjct: 486 LSFGLEYLIAALLSRGAVVKDQLLRSI------ESRNQFLMHVVDSYEQDEAITLEVLER 539
Query: 363 LKDVQECLIKNPKLNEGPKNI--------DDIAE------------VRRLVITPTKAYWF 402
L ++ + + P L NI D +AE VR+ VITPT+
Sbjct: 540 LINMVDEMKNIPPLISAFDNIHKSIFVKKDLLAEIHERSANEGFQRVRKAVITPTRMLLV 599
Query: 403 L-----------ESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTG 451
+ E + DR LR+ F D+ + N + Y+
Sbjct: 600 VPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLRRNKVGSYIIETT------------- 646
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKN 511
V + L G + + +LA S++Q+RD+ +FF+ + V I+ +G+F N
Sbjct: 647 ----VHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFNDGDDGRVGKIREKLGKFDRTN 702
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG------YVFSDGIGKITPDLAME 565
I K +RMG CF+ + + + + ++ D+ ++FSDG+GK++ D A
Sbjct: 703 IPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDSCGEPFIFSDGVGKLSEDFAER 762
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPA---------------------KDDGIRM 604
+A+ L L+ PS +Q R G KGV++ PA K + + +
Sbjct: 763 IAKDLGLNKC-VPSCFQFRLRGLKGVLSVDPALRQRRLWAECNDVEDKNRKTEKVNDLDV 821
Query: 605 SLRGSMKKFKSCHTSL-EICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
R S KF + + EI ++ P LNR I +L VSD + V + +++
Sbjct: 822 LFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILD--QVSDMQGFDVHRRIVHRIH 879
Query: 664 LML----------VASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY---- 709
+L + S+ A + N + L+ GF EP +G+L
Sbjct: 880 GLLDRQLLQLSDALMSENKCRERLAEFPRRINVQYLSLARGFTLTQEPFFRGLLIASVRF 939
Query: 710 --------------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAETK 743
E G L+ Q F+Q + + SK ++
Sbjct: 940 TLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVFVQFTNNVSLKTPSKAAAK----- 994
Query: 744 KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
++ G V+I KNP + GDVR+ EA+D PEL HL D +VFPQ G RPHT+E +GSDLD
Sbjct: 995 --TIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHLVDVVVFPQHGPRPHTDEMAGSDLD 1052
Query: 804 GDLYYVTWDENLI-----PP---SKKSCPP-----MECTPAEAKPLTCHVNHQNLGQICN 850
GD Y V WD+ ++ P SK PP E + ++ ++G I N
Sbjct: 1053 GDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEEDEVVREMRRFYVKYIMQDSVGVIAN 1112
Query: 851 AHVVHADRSEYGAFDENCILLAKLAATAVDSPKT----------------GKIVTMPSHL 894
A + ++D +G + C +A+ + +VD PKT GKI MP
Sbjct: 1113 AFLANSDM--FGIASDICTSIAEKHSQSVDFPKTGWPPRPLVKEWSKGPDGKI--MPPE- 1167
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVP 954
+P+++PDFM +Y S +++G+L+R+I+ +D + + V I D LE
Sbjct: 1168 RPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLVHD--VLTITAVSEGHSQIVVDPLLEYH 1225
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNV---------------NRKEFRHIWSMPKYNS 999
G + +A +Y + L+ Y + NR R M ++N+
Sbjct: 1226 GWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGCFSKIRNRISDRDTDDMSQFNT 1285
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFEKMNS------DFELSDNEK-------NVLYEQKA 1046
++++L + + +FR F F S DF D + + ++KA
Sbjct: 1286 --NFFIEQKLTNIFMSFRSSFFAEFGDFMSCTEPDDDFHSKDMTERRYCKCPTMEMKKKA 1343
Query: 1047 SAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
SA+Y V Y +K+++ + + LLSF WIA D LA IK
Sbjct: 1344 SAYYIVCY-----RKAVNGIGER------LLSFPWIAWDILAEIK 1377
>gi|308476844|ref|XP_003100637.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
gi|308264655|gb|EFP08608.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
Length = 1685
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 222/882 (25%), Positives = 364/882 (41%), Gaps = 215/882 (24%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR++V TPT+ + + +R LR +TF D+ Q M N S +
Sbjct: 545 VRKIVFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSMLLD-- 602
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF-------- 489
K V + L DG + GR + +L S++Q+RD+ A+F
Sbjct: 603 ----------------KTVHTYLRDGITVAGRDFGYLGSSNSQMRDNGAYFMEKYSSSQC 646
Query: 490 ----SKVGETSVLDI-------KNWMGEF-TAKNIAKYAARMGLCFSSTHAT---VEIPP 534
S+ G +D + +G F T NI K AR+G CF+ + + +E
Sbjct: 647 REYQSRTGVKPPIDFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCT 706
Query: 535 TEVDHELP---DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
++L ++KR+ Y FSDG+G ++ A V+ ++ G PS +Q R+ G KGV
Sbjct: 707 YMTTYDLTGGKNVKRDEYTFSDGVGMMSHHFAQMVSHVMDF-GKGVPSCFQFRFRGMKGV 765
Query: 592 VACWPAKDD-------------------GIRMSLRGSMKKF---KSCHTSLEICSWTRFQ 629
+A P D+ + R S KF + +EI ++
Sbjct: 766 IAVEPLLDNIRQWFLENGIPEASEETSWNLNCVFRPSQIKFISKRHPRDQVEIVKYSSPV 825
Query: 630 PGFLNRQIITLLSTLN----------VSDEIFWTVQASMASKLNLMLVASDVAF-EVLTA 678
P LN+ I +L ++ V++ I + M S M+ D F
Sbjct: 826 PVALNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMV---DETFCRNRLK 882
Query: 679 SCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY----------------------------- 709
+ + + S GF +EP + ++
Sbjct: 883 ELPRRIDIDYLRTSWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPSELGRSMLGVV 942
Query: 710 -ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRIL 768
E G L+ Q F+Q +++ K+ +R +V+ G V++ KNPC+ GDVR+
Sbjct: 943 DETGRLQYGQIFVQYTKNLALKLPPKNAAR-------EVLTGTVLLTKNPCIVAGDVRVF 995
Query: 769 EAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC 828
EAVD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y + WD+ L+ K+ P +
Sbjct: 996 EAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEIPFDF 1053
Query: 829 TPAEAKP--------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKL 874
T + K ++ ++G I N+H+ ++D +YG C+ LAK
Sbjct: 1054 TSEKQKTEFKEEDIDALMREFYVKYLKLDSVGTISNSHLHNSD--QYGLNSRVCMDLAKK 1111
Query: 875 AATAVDSPKTGKIVTMPSHLKPK-----------------KYPDF-MEIEEYQTYKSNKI 916
AVD K+G+ P L+ K + PD+ M + Y S ++
Sbjct: 1112 NCQAVDFTKSGQ---PPDELEKKWRRDEETGEMIPPERAERVPDYHMGNDHAPMYVSPRL 1168
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNG 976
G+L+R+ K A D+ + +S E D V+I D + + G ++ AR Y+ QL
Sbjct: 1169 CGKLFREFK-AIDDVLKISEERD-EQVEITIDETMMIDGYKEYMHSAREDLSRYNAQLRS 1226
Query: 977 LLGQYNV---------------NRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFR 1021
++ Y + NR + M YN+ + ++ ++ + + +R+ F
Sbjct: 1227 MMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQM--IETKVTNLFKKYREHFF 1284
Query: 1022 QVFE-KMNSDFELSD---NEKNVLYEQ----------KASAWYQVTYHREWVKKSLDLLE 1067
+ FE ++ E++ +E N+L Q KA AWY+ Y E
Sbjct: 1285 EEFEGGWQANTEVTSRHGSETNILQRQCRAPSNRMMRKAVAWYRACYE-----------E 1333
Query: 1068 QGSARSVVLLSFAWIANDYLA---RIKIKCQEMANIGKSKPV 1106
R LSFAW+ D L +I+ E +G S P+
Sbjct: 1334 ARITRENKKLSFAWLMFDVLGMVKQIRSLTSETIMLGSSNPL 1375
>gi|308510538|ref|XP_003117452.1| CRE-RRF-3 protein [Caenorhabditis remanei]
gi|308242366|gb|EFO86318.1| CRE-RRF-3 protein [Caenorhabditis remanei]
Length = 1779
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 217/860 (25%), Positives = 384/860 (44%), Gaps = 148/860 (17%)
Query: 342 IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW 401
++ A +Y ++ ++ + +Q+ + P PKN +A+V +++P++
Sbjct: 638 VLFAFSTMYKARKVQYERLLSGESLQDVGLAKPL----PKNCVSVAKV---IVSPSRVLL 690
Query: 402 FLESKDVADRF---------LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+ +R LR F D+ L + ++D + N+ + V
Sbjct: 691 MAPEVMMVNRIVRRFGPDYALRCVFRDDNLGRL-----------AIRDFSVNNIDHMSNV 739
Query: 453 F-KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF-------SKVGETSVLDIKNWM 504
+ + + L G + R YSFL +S++Q+RD + + + +V DI+ WM
Sbjct: 740 VTEAIYNTLKSGIKIADRVYSFLGWSNSQMRDQGCYLYAPRVDPITGAVTGTVEDIRIWM 799
Query: 505 GEFT-AKNIAKYAARMGLCFSSTHATVEIPPT------------EVDHEL--PDIK---R 546
G+F A ++ K +RMG CF+ TV + P + H + PD++
Sbjct: 800 GDFRDAVSVPKMMSRMGQCFTQAQPTVRVSPILFQLNFLFQVKLQRHHWIVEPDMEGGPD 859
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMS- 605
N + FSDG G+I+ LA +++IL L P + +Q+R+ G+KG++ P DD + M
Sbjct: 860 NKFCFSDGCGRISYKLAGHISKILDLKAIP--ACFQVRFKGFKGILVIDPTIDDIMNMPK 917
Query: 606 --LRGSMKKFKSCHTSL-----EICSWTRFQPGFLNRQIITLLSTLN----------VSD 648
R S +KF L E+ + P LNR IT+L ++ ++
Sbjct: 918 VIFRKSQQKFGEGGGDLQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSTASHRRITK 977
Query: 649 EIFWTVQASMASKLNLMLVASDVAFEVLT-ASCAEQGNTAAIMLSAGFKPQTEPHLQGML 707
+ + ++ + S N++L + A E++ + N A+ AGF+ T+P ++ ML
Sbjct: 978 RVHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWNLAS--KRAGFQLSTDPLVRSML 1035
Query: 708 --TYE---LGELKECQCFIQ----------VSESSL---ENCFSKHGSRFAETKKLQVI- 748
Y + + + + F+ V E+ L F ++ +T ++
Sbjct: 1036 FAIYRYNIIHHISKAKIFLPPNLGRSMYGVVDETGLLQYGQVFIQYSPTIRQTSDTPILK 1095
Query: 749 NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
G V+I KNPC PGDVR+ EAV +P L HL D +VFP+ G RPH +E +GSDLDGD Y
Sbjct: 1096 TGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDEYS 1155
Query: 809 VTWDENLIPPSKKSC---PPMECTPAEAKPLT--------CHVNHQNLGQICNAHVVHAD 857
+ WD++++ ++ P + +P T ++ ++G++ NAH+V+AD
Sbjct: 1156 IIWDQDMLLDYNETAMVFPSSSSQEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLVYAD 1215
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTG-KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKI 916
+ G F ENC +A A AVD PK+G + SH + PD+M Y S ++
Sbjct: 1216 LN--GLFHENCHSIALKCAVAVDFPKSGVPAEPLTSHEQCDVTPDYMISGGKPMYYSARL 1273
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVD--FTADAR-----NQKCS 969
G+L+R+ + E + E + + YD L P +VD F ++++ +
Sbjct: 1274 NGQLHRKARKV--EEVLEEYESRGSIFEGEYDK-LICPENVDVFFGSESKLVQVMTLRDE 1330
Query: 970 YDGQLNGLLGQYNV---------NRKEFRHIWSMPK-----YNSRKQGELQERLKHSYSA 1015
Y ++ LL +Y + + + + M + Y++ K EL R + YS
Sbjct: 1331 YIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHTDKVVEL--RYEKLYSV 1388
Query: 1016 FRKEFRQVF--EKMNSDFELSDNEK--NVLYEQKASAWYQVTYHREWVKKSLDLLEQGSA 1071
FR +F + F E+ N+ + D +K WY V Y + K+ + Q
Sbjct: 1389 FRAKFFEEFGGEEANTVHDGKDTRVACTPAMHEKIRQWYFVAYVQPKKNKTGRYIGQ--- 1445
Query: 1072 RSVVLLSFAWIANDYLARIK 1091
S W+A D L ++
Sbjct: 1446 ------SLPWVAWDVLCSLR 1459
>gi|413954937|gb|AFW87586.1| hypothetical protein ZEAMMB73_608283 [Zea mays]
Length = 577
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 220/448 (49%), Gaps = 74/448 (16%)
Query: 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIE---NVAE 63
T T+ + GFD + A L LE G VWRCR+KTS TP ESYP+F + A
Sbjct: 120 TGPATRAILTGFDAGLSARGLADELERVAGTVWRCRIKTSVTPPESYPDFQLSVHTAAAA 179
Query: 64 VQKTDDYE-----KVEPHAFVHF--------ATSTYITRAMDAAEHMELFLNGRALKVSL 110
V D E +V PHAFVHF A + TR + + HM L+G A +
Sbjct: 180 VFHQDQDEPPRDGRVAPHAFVHFEHRNAADRAGDFFTTRILAQSRHM---LHGHAARRRD 236
Query: 111 GPENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQDEFFVSWRG---PASGTDFLVDPFDGT 167
G + + P+ P+ +EIG +V D F V+WRG AS DF+VDP G+
Sbjct: 237 GVTD---------AAKPMLFPNSCIEIGDVVAPDTFLVAWRGTDDSASALDFVVDPSGGS 287
Query: 168 CKFCFTKDTAFALKSSAEHAVIKC-----EFKVFLVREIDIVKQYSELPRVAILLWLASS 222
C+ F + TAF A + C EF + V E + L +L L+++
Sbjct: 288 CRLLFARYTAFTCPDRRRPAALLCCDVKLEFALAHVAEALAFQADDSL-----VLRLSAA 342
Query: 223 PRICYRTAKDDIEVLVPFDLLD-DDDPWIRTTDFSPSGAIGQCNS-----------KQRV 270
P + YRT+ DD+ VPF L+D DDDPWIRTTD + SGAIG+C + RV
Sbjct: 343 PLVYYRTSGDDVHGRVPFQLVDADDDPWIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRV 402
Query: 271 QEDCLSQ---PVTIR----------EEPDFEVPVEDPFFCMHYKE----GVSFEIMFLVN 313
+C+ + PV +R EE P+ D FF + + G+ F +++LVN
Sbjct: 403 ALECMQRQGVPVHVRDRRCRGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPVLYLVN 462
Query: 314 AVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFD-AYEKLKDVQECLIK 372
+MH G++N HQ++ FF LL +V V AL ++ K V D +LK+ Q+ K
Sbjct: 463 VLMHNGVVNPHQMTPEFFGLLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDRAAK 522
Query: 373 NPKL---NEGPKNIDDIAEVRRLVITPT 397
N L + K D AEVRRL++TP+
Sbjct: 523 NLDLVCRSRRRKASDCDAEVRRLIVTPS 550
>gi|449467491|ref|XP_004151456.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
Length = 401
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 196/378 (51%), Gaps = 47/378 (12%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
V+ G +V+AKNPCL PGDVR+L+AVD LHH+ DC+VFPQKG RPH NE SGSDLDGDL
Sbjct: 32 VVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDL 91
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHV 853
Y+V WD L K PM PA L V + LG I NAH
Sbjct: 92 YFVCWDTELT--CIKQVKPMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHT 149
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKS 913
V AD++ A CI LAKL + AVD PKTG +P +L+ +YPDFM+ TY S
Sbjct: 150 VFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVS 209
Query: 914 NKILGRLYRQIKGAYDENISVSS-EVDINPVDIH-YDTDLEVPGSVDFTADARNQKCSYD 971
N +LG+L+R +K D + VS+ E+ V YD D+EV G + +A + K YD
Sbjct: 210 NGVLGKLFRGVK---DVSSDVSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYD 266
Query: 972 GQLNGLLGQYNVNRKE---FRHIWSMPK-YNSRKQGELQERLKHSYSAFRKEFRQVFEKM 1027
+L L+ Y + + +I M K ++ RK E++ + + RKE R
Sbjct: 267 FKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKD---LEQIAFAMKSLRKEVR------ 317
Query: 1028 NSDFELSDNEKNVLYEQ------KASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAW 1081
F ++NE Y+ +ASAWY VTYH ++ +G+ R LSF W
Sbjct: 318 ---FWFNENESKSTYDDIQDEYARASAWYCVTYHPDY----WGCYNEGTKRD-HFLSFPW 369
Query: 1082 IANDYLARIKIKCQEMAN 1099
D L +IK + M N
Sbjct: 370 CVADKLIQIKREKMSMRN 387
>gi|341885460|gb|EGT41395.1| CBN-RRF-3 protein [Caenorhabditis brenneri]
Length = 1736
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 221/861 (25%), Positives = 378/861 (43%), Gaps = 165/861 (19%)
Query: 342 IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTK--- 398
++ A +Y ++ ++ + +Q+ + P PKN +A+V ++TP++
Sbjct: 609 VLFAFSTMYKARKTQYERLLSGESLQDVGLAKPL----PKNCVQVAKV---IVTPSRILL 661
Query: 399 -AYWFLESKDVADRF-----LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
A + + RF LR F D+ L + ++D + N+ + +
Sbjct: 662 MAPEVMMVNRIVRRFGPDYALRCVFRDDNLGRL-----------AIRDFSVNNIDHLSNI 710
Query: 453 F-KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-----KVGETS--VLDIKNWM 504
+ + + L G + R+YSFL +S++Q+RD + ++ G S V +I+ WM
Sbjct: 711 VTESIFNTLKYGVQVADRKYSFLGWSNSQMRDQGCYLYAPRVDPATGRVSGTVEEIRKWM 770
Query: 505 GEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHEL--PDIK---RNGYVFSDGIGKI 558
G+F A ++ K +RMG CF+ TV + E H + PD++ Y FSDG G+I
Sbjct: 771 GDFREAVSVPKMMSRMGQCFTQAQPTVRL---ERRHWIVEPDVEGGLSGKYCFSDGCGRI 827
Query: 559 TPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMS---LRGSMKKFKS 615
+ LA + +IL+L + P+ +Q+R+ G+KG++ P DD I M R S +KF
Sbjct: 828 SVKLANHITRILELKET--PACFQVRFKGFKGILVIDPTIDDIIGMPKVIFRKSQQKFGE 885
Query: 616 CHTS-----LEICSWTRFQPGFLNRQIITLLSTLN----------VSDEIFWTVQASMAS 660
LE+ + P LNR IT+L ++ +++ I + ++ + S
Sbjct: 886 GGGDQQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSASSHRRITNRIHYYLERELCS 945
Query: 661 KLNLMLVASDVAFEVLT-ASCAEQGNTAAIMLSAGFKPQTEPHLQGML------------ 707
N++L + A E++ + N A+ AGF+ +P ++ ML
Sbjct: 946 LSNMLLNENQAAEELVNRTNLPIDWNKAS--KHAGFQLSKDPLIRSMLFSIYRYNIIHHI 1003
Query: 708 ------------------TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVI- 748
E G L+ Q FIQ S+S +T ++
Sbjct: 1004 SKAKIFLPPDLGRSMYGVVDETGLLQYGQVFIQYSQS------------IRQTSATPILK 1051
Query: 749 NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
G V+I KNPC PGDVR+ EAV +P L HL D +VFP+ G RPH +E +GSDLDGD Y
Sbjct: 1052 TGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDEYS 1111
Query: 809 VTWDENLIPPSKKSCP--PMECTPAEAKPLTC---------HVNHQNLGQICNAHVVHAD 857
+ WD+ ++ + P P E K T ++ ++G++ NAH+ +AD
Sbjct: 1112 IIWDQEMLLDYNEEAMIYPSSTAPEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLTYAD 1171
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTGKIVT-MPSHLKPKKYPDFMEIEEYQTYKSNKI 916
+G F ENC +A A AVD PK+G + S + + PD+M Y S ++
Sbjct: 1172 L--HGLFHENCRNIALKCAVAVDFPKSGVPAEPLASFEQCEMTPDYMATGGKPMYYSPRL 1229
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVD--FTADARNQKC-----S 969
G+L+R+ + E + E + + YD + P D F ++A+ +
Sbjct: 1230 NGQLHRKARKV--EEVLEEYETRGSIFEGEYDKII-CPDDADVFFGSEAKLVQAMMIRDE 1286
Query: 970 YDGQLNGLLGQYNV---------NRKEFRHIWSMPK-----YNSRKQGELQERLKHSYSA 1015
Y ++ LL +Y + + + + M + Y++ K EL R + Y
Sbjct: 1287 YIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHTDKIVEL--RYEKLYHV 1344
Query: 1016 FRKEFRQVFEKMNSDFELSDNEKNVL-----YEQKASAWYQVTYHREWVKKSLDLLEQGS 1070
FR +F + F + ++D K L +K WY V+Y + K+ + Q
Sbjct: 1345 FRAKFFEEFGGEAAHL-VNDGSKMRLNCTKAMREKVRQWYFVSYVQPKKNKTGKFIGQ-- 1401
Query: 1071 ARSVVLLSFAWIANDYLARIK 1091
S W+ D L ++
Sbjct: 1402 -------SLPWVVWDALCDLR 1415
>gi|268563038|ref|XP_002638736.1| C. briggsae CBR-EGO-1 protein [Caenorhabditis briggsae]
Length = 1631
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 218/862 (25%), Positives = 353/862 (40%), Gaps = 208/862 (24%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + +R LR +TF D+ Q M N S
Sbjct: 491 VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTS------ 544
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
T + K V + L +G + GR + +L S++Q+RD+ A+F K +
Sbjct: 545 ------------TLLEKTVNTYLMNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592
Query: 498 LDIKNW-------------------MGEF-TAKNIAKYAARMGLCFSSTHAT---VEIPP 534
+ + +G F T NI K AR+G CF+ + + ++
Sbjct: 593 REYEKMCRMAPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCT 652
Query: 535 TEVDHELP---DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
++L +IK + Y FSDG+G ++ + A V+Q++ G PS +Q R+ G KGV
Sbjct: 653 YVTMYDLTGGKNIKGDEYTFSDGVGMMSMNFAQMVSQVMDF-GKGVPSCFQFRFRGMKGV 711
Query: 592 VACWPAKDD-------------------GIRMSLRGSMKKF---KSCHTSLEICSWTRFQ 629
+A P DD G+ R S KF + +EI ++
Sbjct: 712 IAVEPFLDDLRQWSIENDIQEVSEDTAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPV 771
Query: 630 PGFLNRQIITLLSTLN----------VSDEIFWTVQASMASKLNLMLVASDVAF-EVLTA 678
P LN+ I +L ++ V++ I + M S M+ D F
Sbjct: 772 PVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMI---DETFCRNRLK 828
Query: 679 SCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY----------------------------- 709
+ + + + GF +EP + ++
Sbjct: 829 ELPRRIDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPADLGRSMLGVV 888
Query: 710 -ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRIL 768
E G L+ Q F+Q + + K SR V+ G V++ KNPC+ GDVRI
Sbjct: 889 DETGRLQYGQIFVQYTRNLALKLPPKSASR-------SVLTGTVLLTKNPCIVAGDVRIF 941
Query: 769 EAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI------------ 816
EAVD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y + WD+ L+
Sbjct: 942 EAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDFTS 1001
Query: 817 PPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAA 876
K S E + ++ ++G I N+H+ ++D +YG C+ LAK
Sbjct: 1002 EKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSD--QYGLNARVCMDLAKKNC 1059
Query: 877 TAVDSPKTGKIVTMPSHLKPK-----------------KYPDF-MEIEEYQTYKSNKILG 918
AVD K+G+ P L+ K + PD+ M + Y S ++ G
Sbjct: 1060 QAVDFTKSGQ---PPEELERKWRKDEVTGEMIPPERAERVPDYHMGNDHTPMYVSPRLCG 1116
Query: 919 RLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLL 978
+L+R+ K A D+ + +S E D V+I D + V G ++ AR Y+ QL ++
Sbjct: 1117 KLFREFK-AIDDVLKISEERD-EQVEITIDETIMVDGYKEYMHSAREDLARYNAQLRSMM 1174
Query: 979 GQYNV---------------NRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQV 1023
Y + NR + M YN+ + ++ ++ + Y +R+ F +
Sbjct: 1175 ENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQM--IETKVTNLYKKYREHFFEE 1232
Query: 1024 FE---KMNSD-FELSDNEKNVLYE----------QKASAWYQVTYHREWVKKSLDLLEQG 1069
FE + N++ +++ N+L +KA AWY+ Y E
Sbjct: 1233 FEGAWEANTEGTSRGESDTNILQRHCRAPTQNMMKKAVAWYRACYE-----------EAR 1281
Query: 1070 SARSVVLLSFAWIANDYLARIK 1091
R LSFAW+ D LA +K
Sbjct: 1282 VTRENKKLSFAWLMYDVLAMVK 1303
>gi|105990552|gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
Length = 459
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/461 (30%), Positives = 231/461 (50%), Gaps = 51/461 (11%)
Query: 249 WIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEP------DFEVPVED--------- 293
W+R DF+P+ + G+C++ S + P + + D
Sbjct: 13 WVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGELGELAIASMDVFGSSSNVV 72
Query: 294 PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYK 353
P V +E++F +N+++H G L ++ F +L + + + + K
Sbjct: 73 PLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSIDTLRRIFEKMSKLK 132
Query: 354 RPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV----- 408
++ + ++ + K + + R+ ITP+K Y ++V
Sbjct: 133 STCYEPLQFIRHEAHSMNMRKKALSNKRESGKLMRCYRIHITPSKIYCLGPEEEVSNYVV 192
Query: 409 ------ADRFLRVTFMDEGLQTMNANVLS------YYVAPIVKDITSNSFSQKTGVFKRV 456
A F RVTF+DE ++ N LS ++ P+ KTG++ R+
Sbjct: 193 KYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPL-----------KTGLYHRI 241
Query: 457 KSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKY 515
SIL +GF + ++Y FLAFS++QLR +S W F+ + +I+ WMG F ++++K
Sbjct: 242 LSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDIRSVSKC 301
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILK 571
AARMG FSS+ T E+ +V+ +PDI+ Y+FSDGIGKI+ A +VA+++
Sbjct: 302 AARMGQLFSSSRQTFEVSSYDVE-VIPDIEVTTDGTKYIFSDGIGKISTRFARQVAKLIG 360
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPG 631
LD + PPSA+QIRY GYKGV+ P +SLR SMKKF+S T L I +W++ QP
Sbjct: 361 LDPAHPPSAFQIRYGGYKGVITIDPT--SFFNLSLRPSMKKFESKSTMLNITNWSKSQPC 418
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVA 672
++NR+II+LLSTL + DE F ++Q + + ML + A
Sbjct: 419 YVNREIISLLSTLGIKDEAFESMQQDDMHESDGMLTNKEAA 459
>gi|115458854|ref|NP_001053027.1| Os04g0465700 [Oryza sativa Japonica Group]
gi|113564598|dbj|BAF14941.1| Os04g0465700, partial [Oryza sativa Japonica Group]
Length = 377
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 191/380 (50%), Gaps = 49/380 (12%)
Query: 739 FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS 798
+ + K + G V I KNPCL PGD+R+LEA+ P+L + DCLVFPQ+G+RPH NE S
Sbjct: 3 YNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECS 62
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-------------HQNL 845
G DLDGDLY++TWD+ LIP +K PM+ T + + V + +L
Sbjct: 63 GGDLDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSL 120
Query: 846 GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEI 905
G I AH++HADRS A C+ LA L + AVD KTG MP L+P++YPDFME
Sbjct: 121 GAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMER 180
Query: 906 EEYQTYKSNKILGRLYRQIKG----AYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTA 961
E Y SN +LG+LYR G + D SS +P YD DLEVPGS +F
Sbjct: 181 WEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT---YDPDLEVPGSDEFLQ 237
Query: 962 DARNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSA 1015
A Y+ +L L+ Y ++ R+ K ++++ E+++R+ + A
Sbjct: 238 AAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDA 297
Query: 1016 FRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVV 1075
+E R L + K + ASAWY+VTYH + R
Sbjct: 298 LHREARGW---------LLSSRKEEDASRMASAWYRVTYHPD------------RRRGKR 336
Query: 1076 LLSFAWIANDYLARIKIKCQ 1095
SF WIA D L IK Q
Sbjct: 337 FWSFPWIACDNLLAIKASSQ 356
>gi|268530338|ref|XP_002630295.1| C. briggsae CBR-RRF-3 protein [Caenorhabditis briggsae]
Length = 1766
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 176/655 (26%), Positives = 313/655 (47%), Gaps = 96/655 (14%)
Query: 342 IVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYW 401
++ A +Y ++ ++ + +Q+ + P PKN +A+V +++P++
Sbjct: 640 VIFAFSTMYKTRKVQYERLLNGESLQDVGLARPL----PKNCVSVAKV---IVSPSRVLL 692
Query: 402 F----LESKDVADRF-----LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+ V RF LR F D+ L + ++D + N+ + V
Sbjct: 693 MAPEVMMVNRVVRRFGPDYALRCVFRDDNLGRL-----------AIRDFSINNIDHMSNV 741
Query: 453 F-KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--------KVGETSVLDIKNW 503
+ + + L +G + R YSFL +S++Q+RD + ++ KV T V DI+ W
Sbjct: 742 VTEAIYNTLKNGIQVADRHYSFLGWSNSQMRDQGCYLYAPRVDPISGKVSGT-VEDIRVW 800
Query: 504 MGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTE--VDHELPDIKRNGYVFSDGIGKITP 560
MG+F A ++ K +RMG CF+ TV++ V+ ++ N + FSDG G+I+
Sbjct: 801 MGDFREAVSVPKMMSRMGQCFTQAQPTVKLARHHWLVEPDMEGGPGNKFCFSDGCGRISY 860
Query: 561 DLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMS---LRGSMKKFKSC- 616
LA ++ + LKL P+ +Q+R+ G+KG++ P DD I M R S +KF
Sbjct: 861 KLAGQITRKLKL--KEIPACFQVRFKGFKGILVIDPTIDDIINMPKVIFRKSQQKFGEGG 918
Query: 617 ----HTSLEICSWTRFQPGFLNRQIITLLSTLN----------VSDEIFWTVQASMASKL 662
SLE+ + P LNR +T+L ++ +++ + + ++ ++S
Sbjct: 919 GDQQDESLEVVKYAMPSPVCLNRPFVTILDQVSKKQSAKCHQRITNRVHYYLERELSSLS 978
Query: 663 NLMLVASDVAFEVLT-ASCAEQGNTAAIMLSAGFKPQTEPHLQGML--TYE---LGELKE 716
N++L + A E++ + N A+ AGF+ +P ++ ML Y + + +
Sbjct: 979 NMLLNENQAAEELVNRTNLPIDWNLAS--KRAGFQLSVDPLIRSMLFAIYRYNIIHHISK 1036
Query: 717 CQCFIQ----------VSESSL---ENCFSKHGSRFAETKKLQVI-NGFVVIAKNPCLRP 762
+ F+ V E+ L F ++ +T ++ G V+I KNPC P
Sbjct: 1037 AKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPTIRQTSPEPLLKTGKVLITKNPCHVP 1096
Query: 763 GDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
GDVR+ +AV +P L HL D +VFP+ G RPH +E +GSDLDGD Y + WD+ ++ ++
Sbjct: 1097 GDVRVFDAVWQPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNET 1156
Query: 823 C---PPMECTPAEAKPLT--------CHVNHQNLGQICNAHVVHADRSEYGAFDENCILL 871
P + + +P T ++ ++G++ NAH+V+AD +G F ENC +
Sbjct: 1157 AMVFPSSQAQEEDKEPTTDDMVEFFLRYMQQDSIGRMSNAHLVYADL--HGLFSENCASI 1214
Query: 872 AKLAATAVDSPKTG-KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK 925
A+ A AVD PK+G + + PD+M Y S + G+L+R+ +
Sbjct: 1215 AQKCAVAVDFPKSGVPAEPLTGFEQCDVTPDYMMSGGKPMYYSASLNGQLHRKAR 1269
>gi|134114255|ref|XP_774375.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1123
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 232/824 (28%), Positives = 366/824 (44%), Gaps = 142/824 (17%)
Query: 361 EKLKDVQECLIKNPK-LNEGPKNID-DIAEVRRLVITPTKAY----WFLESKDVADRF-- 412
+K++D++ + K L P I + +R +++TPT+ + S V R+
Sbjct: 340 QKIRDIKHLIPKLAAFLRRRPPYIQPHLVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHD 399
Query: 413 -----LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
+RV F DE + ++A +K I +S + G+ RV+ L G +
Sbjct: 400 KLDGIIRVQFTDEEDR--------LFIADNMKLI--DSINPAVGIMARVRRALQFGLIIG 449
Query: 468 GRRYSFLAFSSNQLRDHSAWFFS-KVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSST 526
G + +A S++Q ++H+ WF + KV + L+++NWMG +AK+AARMGL FS++
Sbjct: 450 GETFYPVASSASQQKEHAMWFINNKVIDG--LELRNWMGTVHETVVAKHAARMGLPFSTS 507
Query: 527 H-ATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL--KLDGSPPPSAYQI 583
++I + ELPDI+RNG F+DG G ++ + A L K+ + PSA Q
Sbjct: 508 RIVNMKI---NIGEELPDIERNGRCFTDGCGIAGREVLNQAALALNEKVGINSQPSAIQF 564
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KGV++ W + + LR SM KFKS L + ++Q FLNRQ I ++
Sbjct: 565 RLGGAKGVLSDWSQLVNEYEIRLRPSMIKFKSDLADLNVIRIAKYQAAFLNRQFINIMCA 624
Query: 644 LNVSDEIFWTV-----------------QASMASKLNLMLVASDVAFEVLTASCAEQG-- 684
V E+ + A + L+ + +D L S +
Sbjct: 625 NGVPHELIIGIFEDAIADIKGFKDRVWNNAVTENDQQLIALCNDFPLAQLIKSGFNENPL 684
Query: 685 --NTAAIM---------LSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFS 733
+ AAI+ A K +L G+ E G LKE + F Q E+
Sbjct: 685 LLDVAAIIECRALQDLKWRARVKLLDGVYLIGIAD-ETGTLKEGEVFCQFQEND------ 737
Query: 734 KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPH 793
E+ V+N V++ + P L PGDVR AVD PEL HL + +VF +G R
Sbjct: 738 -------ESPPKIVVNE-VLVCRAPALHPGDVRRAWAVDNPELRHLKNVIVFSTQGMRDM 789
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT---PAEAKPLTC-HVN-------- 841
+ G DLDGD Y + WD+ + S K PM+ P K +T H+N
Sbjct: 790 PSMLGGGDLDGDDYTLIWDQRFV-QSLKVYDPMDYEAPDPISVKHVTQKHLNENFVQYIL 848
Query: 842 HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPD 901
+ LGQ+ N H+ +D Y FD C+ L+++ +TAVD KTG+ + L+PK++PD
Sbjct: 849 NDVLGQVDNCHLALSDM--YTPFDPRCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPD 906
Query: 902 FMEIEEYQ-TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH---YDTDLEV---P 954
FM+ ++ + Y+S ILG+++R V ++ +P D+ Y TD + P
Sbjct: 907 FMDKDDVKVVYESTGILGKIFR----------IVQADAHFSPSDLEQMGYPTDPRITRFP 956
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRH---IWSMPKYNSRKQGELQERLKH 1011
+ K SY+ L + +Y V E I + + R Q L E L+
Sbjct: 957 LHESLLDRLKPLKASYERDLQYDMRRYRVYEPEIPSGIAIRNKRRKRVRDQN-LNEPLRE 1015
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAW--YQVTYHREWVKKSLDLLEQG 1069
+Y+ R+ +K+ +DFE K L + A Y +TY V++ L +G
Sbjct: 1016 AYNLLVNNVRETAQKIVNDFEF----KTTLTPMQVVARHCYALTYEEVHVRQWEQALAEG 1071
Query: 1070 S-------------ARSVVLLSFAWIANDYLARIKIKCQEMANI 1100
R L+SFAW CQE+ I
Sbjct: 1072 KFGEKPEDDEDSERLRPKPLISFAWCF----------CQELVQI 1105
>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
Length = 2852
Score = 216 bits (549), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 209/693 (30%), Positives = 325/693 (46%), Gaps = 94/693 (13%)
Query: 459 ILSDGFNL--CGRRYSFLAFSSNQLRDHSAWFF----SKVGETSVLDIKNWM-GEFTAKN 511
IL +G N+ G Y FL SS+Q+R++ +WF+ E+ + +I+ M G+ +
Sbjct: 1379 ILLNGINVPEMGTFY-FLGSSSSQVRNYQSWFYCVEEGVNKESRLKEIREAMIGKTDSSW 1437
Query: 512 IAKYAAR-MGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL 570
A+ A R M L F ST T+ IPP E L DI RN + F++G G + + A E+A
Sbjct: 1438 SARKALRAMSLVFPSTIPTIRIPPHEYHEGLDDIVRNDHNFTEGCGYVGIETAREIA--- 1494
Query: 571 KLDGSPP--PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-----HTSLEIC 623
+ G+ P SAYQIR G KGVV+ + GI LR SM+KF + + +LE+
Sbjct: 1495 -IAGNFPQDTSAYQIRIGGNKGVVSVHHSIRRGIY--LRKSMRKFNTTDEHAYNRTLEVI 1551
Query: 624 SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQ 683
S + + LNRQII LL L V D F ++Q + KL + V ++ +
Sbjct: 1552 SVSSKKACNLNRQIINLLVGLGVLDGFFLSLQQAALDKLAHIFNDESVRRHIMHELSSID 1611
Query: 684 GNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQV-SESSLENCFSKHGSRFAET 742
+ L+A P LQ +L ++K+ +C I++ S ++ + G +
Sbjct: 1612 EAFDELDLAAN-DPLICSSLQLCYLKKLDQIKD-KCMIEIDSARTVLGVSDESGILGPDE 1669
Query: 743 KKLQ-------------VINGFVVIAKNPCLRPGDVRILEAVDRPELHH-LCDCLVFPQK 788
LQ VI G V + KNPCL PGD+R+L AVD PEL + D + F Q
Sbjct: 1670 VFLQISIDEEDGHISRKVITGQVFVCKNPCLHPGDIRVLTAVDVPELRNCYVDVIAFSQN 1729
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLI------PP-------SKKSCPPMECTPAE-AK 834
G+ P+ + SGSDLDGD Y+V +D+ ++ PP + K PP + + + K
Sbjct: 1730 GEVPNFKQCSGSDLDGDRYFVGFDQTMVKFITPEPPFLGDESANTKVEPPYDGSHKQLVK 1789
Query: 835 PLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
++ +LG+I +H+ D+ + I LA VD+ KTG +P +
Sbjct: 1790 QYITNITRGSLGKIALSHLAICDK--FSPTHPLAIELAIQHFIEVDAFKTGVNGKVPDIV 1847
Query: 895 KP-----KKYPDFME--IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIH 946
K K YP+FME + + + S+KILG+LY+ ISV + + D
Sbjct: 1848 KKHLNYFKLYPNFMESSMPKKNYWVSHKILGKLYQ---------ISVPLKAIPRYIPDTF 1898
Query: 947 YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSR 1000
D L V G ++ ADA+ Y +N LL +Y+++R+E + + +Y
Sbjct: 1899 VDEGLLVDGYQEYLADAKKTYTRYKFAINSLLTRYDIDREEDIIIEFIKETINSMRYTKL 1958
Query: 1001 KQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVK 1060
EL++ +FR EF +VF + D + N + + ++K SAWY+V Y
Sbjct: 1959 IIDELKKSYHEIQDSFRDEFIRVFPGKDVDEKKRFNSEAI--QKKVSAWYKVAYSDVEND 2016
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
K+ L+F WI Y + IK
Sbjct: 2017 KT--------------LTFYWIVKQYQPKRSIK 2035
>gi|308474534|ref|XP_003099488.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
gi|308266677|gb|EFP10630.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
Length = 1637
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 214/868 (24%), Positives = 354/868 (40%), Gaps = 213/868 (24%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + +R LR + F D+ Q M N S
Sbjct: 491 VRKIIFTPTRVVYVAPETLMGNRVLRRYDRDGCRVLRIMFRDDDNQKMRTNKTS------ 544
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS- 496
T + V L DG + G+ + +L S++Q+RD A+F K
Sbjct: 545 ------------TLLETTVHRYLRDGITVAGKNFGYLGSSNSQMRDSGAYFMEKYSSAQC 592
Query: 497 ------------------VLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHAT---VEIPP 534
+ + +G F T NI K AR+G CF+ + + +E
Sbjct: 593 REYEEKYKLKPPIDFNPKIQSARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCT 652
Query: 535 TEVDHELP---DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
+L ++KR+ Y FSDG+G ++ A V++++ L G PS +Q R+ G KGV
Sbjct: 653 YITTFDLTGGKNVKRDEYTFSDGVGLMSHLFAKMVSEVMDL-GKGVPSCFQFRFRGMKGV 711
Query: 592 VACWPAKDD-------------------GIRMSLRGSMKKF---KSCHTSLEICSWTRFQ 629
+A P D+ G+ R S KF + +EI ++
Sbjct: 712 IAVEPLLDNIRLWCVENNVPEVSEETSWGLSCVFRPSQIKFISKRHPRDQVEIVKYSAPV 771
Query: 630 PGFLNRQIITLLSTLN--VSDEIFWTVQASMASKLN--LMLVASDVAFEVLTAS----CA 681
P LN+ I +L ++ S E V + L+ ++ A + E +
Sbjct: 772 PVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLQFAQQMVDETFCRNRLKELP 831
Query: 682 EQGNTAAIMLSAGFKPQTEPHLQGMLTY------------------------------EL 711
+ + + + GF +EP + ++ E
Sbjct: 832 RRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFLITRQLRKEQIPIPADLGRSMLGVVDET 891
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
G L+ Q F+Q++++ K +R QV+ G V++ KNPC+ GDVRI EAV
Sbjct: 892 GRLQYGQIFVQLTKNLALKIPPKTAAR-------QVLTGTVLLTKNPCIVAGDVRIYEAV 944
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPA 831
D PELHH+ D +VFPQ G RPH +E +GSDLDGD Y + WD+ L+ K+ P + T
Sbjct: 945 DIPELHHMNDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDPFDFTSE 1002
Query: 832 EAKP--------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
+ K ++ ++G I N+H+ ++D +YG C+ LAK
Sbjct: 1003 KQKSSFKEEEIDGLMRDFYVTYLKLDSVGTISNSHLHNSD--QYGLNSRVCMDLAKKNCQ 1060
Query: 878 AVDSPKTGKIVTMPSHLKPK-----------------KYPDF-MEIEEYQTYKSNKILGR 919
AVD K+G P L+ K + PD+ M + Y S ++ G+
Sbjct: 1061 AVDFTKSG---IPPEELEKKWRKDDETGEMIPPERAERVPDYHMGNDHSPMYVSPRLCGK 1117
Query: 920 LYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLG 979
L+R+ K A D+ + +S E D ++I D + + G ++ AR Y+ QL ++
Sbjct: 1118 LFREFK-AIDDVVKISEERD-EQIEISIDPTMTIDGYDEYMQSAREDLARYNAQLRSVME 1175
Query: 980 QYNVNRKEFRHIWS-----------------------MPKYNSRKQGELQERLKHSYSAF 1016
Y + + R+ + M YN+ + ++ ++ + + +
Sbjct: 1176 NYGIKKINDRYFQTEGEIFSGCIVDMRNRISDKDQDDMSFYNTNQL--IETKVSNLFKKY 1233
Query: 1017 RKEFRQVFE---KMNSDFELSDNEKNVLYEQ----------KASAWYQVTYHREWVKKSL 1063
R+ F F+ + N++ + NE N+L Q KA AWY+ Y
Sbjct: 1234 REHFFDEFDGGWQTNTECTRNGNETNILQRQCRAPTNKMMRKAVAWYKACYE-------- 1285
Query: 1064 DLLEQGSARSVVLLSFAWIANDYLARIK 1091
E R LSFAW+A D LA +K
Sbjct: 1286 ---EARVTRENKKLSFAWLAYDVLASVK 1310
>gi|392575092|gb|EIW68226.1| hypothetical protein TREMEDRAFT_74213 [Tremella mesenterica DSM
1558]
Length = 1004
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 170/540 (31%), Positives = 263/540 (48%), Gaps = 57/540 (10%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQK--TGVFKRVKSILSDGFNLC 467
D +RV F DE + V+D T SQ+ GV RV+ L G +
Sbjct: 373 DSIIRVQFSDEEDRIF------------VQDYTKQVDSQRPDLGVMARVRRALRWGLVVG 420
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTH 527
GRRY +A SS+Q ++H+ WF E +L+++ WMG+ IAK+AARMGL FS++
Sbjct: 421 GRRYLPVASSSSQQKEHAMWFIDN-KEIDMLELQRWMGQVDETIIAKHAARMGLPFSTSR 479
Query: 528 ATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL-DG-SPPPSAYQIRY 585
VEI ++ ++PD++RNG+ F+DG+G ++ E A+ L +G + PSA Q R
Sbjct: 480 -IVEIN-VDIGLQIPDVERNGHCFTDGVGLAGFEVMREAARALGFREGINSTPSAIQFRL 537
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ--PGFLNRQIITLLST 643
G KG++A WP + + +R SM KFKS L + + G + +I + +
Sbjct: 538 GGAKGMLAFWPGRVKDHEVKMRKSMVKFKSGLKDLNVVRFIMIMCANGIPEQLMIDIFND 597
Query: 644 LNVSDE-IFWTVQASMASKLNLMLVASDVAFEVLT---------------ASCAEQGNTA 687
S + + V S+ + L+++ F +L S E
Sbjct: 598 AVASIKGLRERVATKTLSRDDHKLISTCSEFPLLALIKAGFHENPMILDICSIVETRALQ 657
Query: 688 AIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV 747
+ A + T L G + E G LKE + F Q ES +T + +
Sbjct: 658 DLKWRARVRLPTGVFLIG-IADETGTLKEGEVFCQYQESD-------------DTPPV-I 702
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
+ V++ + P L PGDVR AVD P L HL + LVF +G+R N G DLDGD
Sbjct: 703 VESEVIVCRAPALHPGDVRRAFAVDNPYLRHLKNVLVFSVQGERDLPNMLGGGDLDGDAP 762
Query: 808 YVTWDENLIPPSKKSCPPMECTPAEAKPLTCHV--NHQN--LGQICNAHVVHADRSEYGA 863
+ L S + P + T + + + V + QN LGQ+ N H+ +D + G
Sbjct: 763 QGFPSDELYGSSSATGPKGDSTAPQREFCSVMVTDDSQNDVLGQVDNCHLARSDWEDKGP 822
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY-QTYKSNKILGRLYR 922
F +C+ L+++ +TAVD PKTG+ + ++PK +PDFM+ + +TY+S KILG L+R
Sbjct: 823 FHPDCLELSEIHSTAVDFPKTGQAAILDPSMRPKLWPDFMDKDATKKTYESQKILGILFR 882
>gi|239613137|gb|EEQ90124.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1154
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 201/683 (29%), Positives = 310/683 (45%), Gaps = 131/683 (19%)
Query: 336 CQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVIT 395
+P EV V+AL + R +A V+E + + + P ++ + R+ +T
Sbjct: 295 VEPSEVDVSALVATF---RNALEAA-----VREHKMASTNRHTNPNHVS----IHRVQVT 342
Query: 396 PTKAYW---FLESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSN 444
P Y ++ESK+ D FLRV FMDE + + + Y + I
Sbjct: 343 PCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDE-----SGDPVRYDPRASIDLI--- 394
Query: 445 SFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL----DI 500
F Q R K +L +G N+ GR++ FL FS + LR + WF + +L I
Sbjct: 395 -FQQ------RFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTI 447
Query: 501 KNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKIT 559
+G F N AK AAR+G FS T ++ I E+ + D++RN VFSDG+G I+
Sbjct: 448 IQNLGRFDHINSPAKQAARIGQTFSETLTSIPIS-EEIISVVQDVRRNDRVFSDGVGTIS 506
Query: 560 PDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT- 618
P + + + L P+ +QIR AG KG+V+ +++ G + LR SM KF +
Sbjct: 507 PSVMYMIWKDYSLRTMVKPTVFQIRIAGAKGMVSL-DSRNKGESLVLRPSMIKFPVTTSF 565
Query: 619 ---SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
++EIC S R P FLN Q+I +L L V +F +Q +L ++ A +
Sbjct: 566 NAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAK 625
Query: 675 VLTASCAEQGNTA---------AIMLSAGFKPQTEPHLQGMLTY----ELGELKECQCFI 721
L E N A +I+ + G + + L+ ++ +L +LK + I
Sbjct: 626 FL-----EDTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLK-YRARI 679
Query: 722 QVSESSL------ENCFSKHGSRFAET-----KKLQVINGFVVIAKNPCLRPGDVRILEA 770
+V ++ E + K G F + ++ ++N VV+ ++P + PGDV+I +A
Sbjct: 680 RVPKAVTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAKA 739
Query: 771 VDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME 827
VD P L L +C+ F Q GDR + SG DLDGDLY V +++ LIP + PP +
Sbjct: 740 VDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFEDTLIP--RVISPPAQ 797
Query: 828 CTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKL 874
+ K L + LG+I H AD+ G FD C+LLA+L
Sbjct: 798 YPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAEL 857
Query: 875 AATAVDSPKTGKIVTMPSHLK-PKKYPDFME-------------IEEY------------ 908
+TAVD K+G V + K P+ PDF +EE+
Sbjct: 858 HSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDDDEE 917
Query: 909 -------QTYKSNKILGRLYRQI 924
+ YKS KILG+LYR I
Sbjct: 918 EDERPTARYYKSEKILGKLYRAI 940
>gi|449304105|gb|EMD00113.1| hypothetical protein BAUCODRAFT_119665 [Baudoinia compniacensis UAMH
10762]
Length = 1187
Score = 213 bits (541), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 194/663 (29%), Positives = 305/663 (46%), Gaps = 105/663 (15%)
Query: 337 QPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITP 396
+ RE + A++ + +D YE L E K I + ++VITP
Sbjct: 380 EARECSIRAMRTLIRKYADAYDQYEP-----------GNLYELAKAYMHINLIHKVVITP 428
Query: 397 TKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNS 445
Y S + +R F+RV F DE +M+ + +
Sbjct: 429 AGTYLEGPSAEPTNRVLRKYATQTDCFIRVVFQDEDGSSMHHDPRA-------------- 474
Query: 446 FSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV----GETSVLD-- 499
SQ+ R K +L N+ G+ +SFL FS + LR+ S WF + + T VL
Sbjct: 475 -SQEAIYHIRYKGVLDGTINIAGQGFSFLGFSHSSLRNRSCWFMAPLIDSRTRTLVLSPQ 533
Query: 500 IKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKI 558
+ +G+FT + AK AAR+G CF+ T A+V + EV +LP ++RNG FSDG+G +
Sbjct: 534 VIKELGDFTHIRTPAKCAARIGQCFTDTTASVSVKDWEVG-KLPVVERNGRDFSDGVGTL 592
Query: 559 TPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT 618
+ L +V Q+ + + P+ QIR+ G KG+V+ ++ G ++ LR +M+KF +
Sbjct: 593 SRQLFEDVWQVYGMRNALKPTVLQIRFQGAKGMVS-LDSRLQGRQLLLRTNMEKFVGSQS 651
Query: 619 S-LEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML---VASDVAF 673
LEIC + R P LNRQ + +L L E ++Q KL ML V +
Sbjct: 652 RVLEICGAGFRPLPMVLNRQSVQILEDLGTPTEAVLSLQTREVQKLQCMLESAVNTASLL 711
Query: 674 EVLTASCAEQGNTAAIML-SAGFKPQTEPHLQGM----LTYELGELKECQCFIQVSESSL 728
E + + A + ML A + + L G+ + ++L ++K + I +++
Sbjct: 712 ETMELTKAAKLPDLIDMLDQARLDFRHDRFLTGIAQMAVVHQLRDIK-YRGRIHINDGVT 770
Query: 729 ------ENCFSKHGSRFAETKKL------QVINGFVVIAKNPCLRPGDVRILEAVDRPE- 775
E + + G + T+K ++I ++I ++P + PGD++ + AV P
Sbjct: 771 LYGIMDETGYLQEGEVYVVTEKAPDGGRKELIRNNILITRSPAMHPGDIQQVNAVSVPAD 830
Query: 776 --LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPP--MECTPA 831
L HL + +VF Q G R ++ SG DLDGDLY + WD L P+K + P P
Sbjct: 831 SPLKHLSNVVVFSQHGARDLPSQLSGGDLDGDLYNIIWDSTLW-PTKFATPADYPRVKPV 889
Query: 832 EAKPL----------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDS 881
E + + LG IC+ H+ AD+ G +D +CI LA +A+TAVD
Sbjct: 890 ELDRIVTGKDMSDFFVTFMETNQLGMICSIHMQLADQRPMGTWDPDCIKLAAMASTAVDY 949
Query: 882 PKTGKIVTMPSHLKPKK-YPDFM--------------EIEE-----YQTYKSNKILGRLY 921
KTG V M K + PDFM ++E+ Y+ YKS K LG+LY
Sbjct: 950 SKTGIPVDMKQCPKYDRCRPDFMAPSPRILLSEQGYLDLEDELSRPYRYYKSQKALGQLY 1009
Query: 922 RQI 924
R I
Sbjct: 1010 RAI 1012
>gi|402590834|gb|EJW84764.1| RNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 1136
Score = 213 bits (541), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 211/733 (28%), Positives = 327/733 (44%), Gaps = 143/733 (19%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV-------GET--SVLDIKNWMGEFTA- 509
L G ++ R Y FLA+S++Q+RD + +S GE +V DI+ WMG+FTA
Sbjct: 133 LGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDATVNDEVHGEMVYNVEDIRRWMGDFTAS 192
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV---------FSDGIGKITP 560
KN+ K +RMG CF+ T+ + D ++ D G V FSDG+G+I+
Sbjct: 193 KNVPKLMSRMGQCFTQAQPTIMLKKD--DWKVEDDILGGIVHPETGEVFNFSDGVGRISK 250
Query: 561 DLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSL 620
A +A+ L L P PS YQ+R+ G+KGV+ P D+ L + F+ T +
Sbjct: 251 KYADRIAKTLGL--CPTPSCYQVRFKGFKGVLCIDPLLDE-----LDQANIVFRK--TEV 301
Query: 621 EICSWTRFQPGFLNRQIITLLSTLN----------VSDEIFWTVQASMASKLNLMLVASD 670
E+ ++ P LNR +I +L ++ V + I ++ + KL M+ +
Sbjct: 302 EVVKYSMPSPVCLNRPLIMILDQVSEKQGRHLHKKVCNRIHSLLELEL-DKLAAMMFDEN 360
Query: 671 VAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLT-------------YELGEL--- 714
+A E L++ + + + S G EP + +L YE +
Sbjct: 361 IATEELSSRLSLPIDFHQLH-SNGITFTNEPFFRSLLIAVHRYNISWFLTLYEYSNIATG 419
Query: 715 -------KECQCFIQVSESSL------ENCFSKHGSRFAE---------TKKLQVINGFV 752
K+ Q F+ S + ++G F + TKK+ V G V
Sbjct: 420 IIFRIASKQIQNFLPCSMGRTMYGVIDDTGLLQYGQVFIQYSSSMQYVLTKKI-VYTGSV 478
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++ KNPC GDVR+ EAV + L HLCD +VFP+ G RPH++E +GSDLDGD Y V +D
Sbjct: 479 MVTKNPCHVAGDVRMFEAVYQDALLHLCDVIVFPRYGPRPHSDEMAGSDLDGDEYTVIFD 538
Query: 813 ENLIPPSKKSCP------PMEC-TPAEAKPLT----CHVNHQNLGQICNAHVVHADRSEY 861
+ L + + P EC TP + +++ ++G++ NAH++
Sbjct: 539 KELFFENNERAMFFPKSIPSECGTPPTTGDMIDFFLKYLSQDSIGRMSNAHLI------- 591
Query: 862 GAFDENCILLAKLAATAVDSPKTGKIVTMP--SHLKPKKYPDFMEIEEYQTYKSNKILGR 919
E C +A+ A AVD PKTG + P SH + + PD+M+ +Y+S ++LG
Sbjct: 592 ---IEICDDIARKCAVAVDFPKTG-VAAKPLLSHEQCEVMPDYMQNMIRPSYRSKRLLGE 647
Query: 920 LYRQIKGAYDENISVSSEVDINPVDIH-YDTDLEVPGSVDFTADARNQKCSYDGQLNGLL 978
LYR+ + D + V + D YD L S + ++ + Y ++ L+
Sbjct: 648 LYRKARRVEDISEIVQGTKFADYCDPQLYDESLFHEQS-ELIQESLRLRDEYHSRIQQLM 706
Query: 979 GQYNVNRKE---------FRHIWSMPK-----YNSRKQGELQERLKHSYSAFRKEFRQVF 1024
+Y ++ + + I M K Y+S K EL R +S FR+EF + F
Sbjct: 707 DEYGISDEASVISGHSMTIKRIIEMEKDDYSFYHSDKIVEL--RYSRIFSYFRREFFKEF 764
Query: 1025 EKMNSDFELSDN------EKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLS 1078
SDF D N+ KA AWY VTY + RS S
Sbjct: 765 GG-ESDFLTVDAFGKREMRWNMALITKAKAWYAVTY-------------TSAFRSSEFRS 810
Query: 1079 FAWIANDYLARIK 1091
F WI D L IK
Sbjct: 811 FPWIVWDILLIIK 823
>gi|261191013|ref|XP_002621915.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590959|gb|EEQ73540.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1239
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 202/683 (29%), Positives = 309/683 (45%), Gaps = 131/683 (19%)
Query: 336 CQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVIT 395
+P EV V+AL + R +A V+E + + + P ++ + R+ +T
Sbjct: 380 VEPSEVDVSALVATF---RNALEA-----AVREHKMASTNRHTNPNHVS----IHRVQVT 427
Query: 396 PTKAYW---FLESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSN 444
P Y ++ESK+ D FLRV FMDE + + + Y + I
Sbjct: 428 PCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDE-----SGDPVRYDPRASIDLI--- 479
Query: 445 SFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL----DI 500
F Q R K +L +G N+ GR++ FL FS + LR + WF + +L I
Sbjct: 480 -FQQ------RFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTI 532
Query: 501 KNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKIT 559
+G F N AK AAR+G FS T ++ I E+ + D+KRN VFSDG+G I+
Sbjct: 533 IQNLGRFDHINSPAKQAARIGQTFSETLTSIPIS-EEIISVVQDVKRNDRVFSDGVGTIS 591
Query: 560 PDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT- 618
P + + + L P+ +QIR AG KG+V+ +++ G + LR SM KF +
Sbjct: 592 PSVMYMIWKDYSLRTMVKPTVFQIRIAGAKGMVSL-DSRNKGESLVLRPSMIKFPVTTSF 650
Query: 619 ---SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE 674
++EIC S R P FLN Q+I +L L V +F +Q +L ++ A +
Sbjct: 651 NAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAK 710
Query: 675 VLTASCAEQGNTA---------AIMLSAGFKPQTEPHLQGMLTY----ELGELKECQCFI 721
L E N A +I+ + G + + L+ ++ +L +LK + I
Sbjct: 711 FL-----EDTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLK-YRARI 764
Query: 722 QVSESSL------ENCFSKHGSRFAET-----KKLQVINGFVVIAKNPCLRPGDVRILEA 770
+V ++ E + K G F + ++ ++N VV+ ++P + PGDV+I +A
Sbjct: 765 RVPKAVTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAKA 824
Query: 771 VDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME 827
VD P L L +C+ F Q GDR + SG DLDGDLY V + + LIP + PP +
Sbjct: 825 VDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFKDTLIP--RVISPPAQ 882
Query: 828 CTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKL 874
+ K L + LG+I H AD+ G FD C+LLA+L
Sbjct: 883 YPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAEL 942
Query: 875 AATAVDSPKTGKIVTMPSHLK-PKKYPDFME-------------IEEY------------ 908
+TAVD K+G V + K P+ PDF +EE+
Sbjct: 943 HSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDEEEE 1002
Query: 909 -------QTYKSNKILGRLYRQI 924
+ YKS KILG+LYR I
Sbjct: 1003 EDERPTARYYKSEKILGKLYRAI 1025
>gi|156045453|ref|XP_001589282.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980]
gi|154694310|gb|EDN94048.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1184
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 200/707 (28%), Positives = 312/707 (44%), Gaps = 118/707 (16%)
Query: 300 YKEGVSFEIMFLVNAVMHKGILNQHQLSD---SFFDLLRCQPREVIVTALKHIYSYKRPV 356
+ + F + F + + G L+ Q+ D +F + + + V A + ++ ++ P
Sbjct: 315 FNNTLPFPLTFQIQKLAQNGFLSPRQVIDLLPTFTSMFKRSSLPICVAATRRLF-HQLPF 373
Query: 357 FDAYEKLKD-----VQECLIKNPKLNE---------GPKNIDDIAEVRRLVITPTKAYWF 402
K +D + E L+KN KL+ G + A V R+ ITP A ++
Sbjct: 374 PGPNVKAEDFDKNAIVELLLKNEKLSTQEALYAEDFGGTASQNTALVHRVTITP--AGFY 431
Query: 403 LESKDVADR-------------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQK 449
LE + F+RV F DE + Y + + D +
Sbjct: 432 LEGPEAESNNRILRKYAGSHGNFVRVNFCDEDGGRIQ------YASNVANDEIFD----- 480
Query: 450 TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF----FSKVGETSVLDIKNWMG 505
GVFK +IL +GF++ ++Y +L S + LR S WF F+K G I + +G
Sbjct: 481 -GVFK---NILKNGFSIASQKYEYLGSSHSSLRTQSCWFVAPFFNKEGYHDAQHIIHDLG 536
Query: 506 EFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHE-LPDIKRNGYVFSDGIGKITPDLA 563
FTA ++ AK AAR+G FS T + + V E +PD++RNG VFSDG+G ++ L
Sbjct: 537 NFTAIRSPAKCAARIGQAFSDTPNAITLDKRTVTIERIPDVERNGRVFSDGVGTMSESLM 596
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK-SCHTSLEI 622
++ + L P+ +QIRY G KG+++ + G + LR SM KF S LEI
Sbjct: 597 HKIWEKLPNKKFVKPTCFQIRYQGAKGMIS-LDTRLPGDHLRLRESMIKFDGSISNDLEI 655
Query: 623 CSWTRFQP--GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML-------------- 666
C ++P +LNRQ I +L L V E F +Q ++L +
Sbjct: 656 CGGA-YKPLSMYLNRQFIKILEDLGVEPEYFMKLQEKEVTRLRAITANTYNASTFLERKR 714
Query: 667 VASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSES 726
V V L C+ L+ F+ + L+ +L E+ L E + +
Sbjct: 715 VGDVVLLPYLIEHCS--------YLNLDFR--NDVFLRDVL--EMAVLIELRTLKHKARI 762
Query: 727 SLENCFSKHGSR---------------FAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
+E + HG + K+ ++ VVI + P L PGDV++ AV
Sbjct: 763 PVEKGYHLHGIMDETGILKEGEIYCCWLEDGKRTTLVQSSVVITRAPALHPGDVQLANAV 822
Query: 772 DRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD------ENLIPPSKKS 822
D P L L +C+ F QKG R ++ SG DLDGDLYYV +D + +IP
Sbjct: 823 DVPSNSPLKRLYNCICFSQKGARDLPSQLSGGDLDGDLYYVMFDPEMKLKKTVIPADYPR 882
Query: 823 CPPMECTPA-----EAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
PP++ + A + LG I N H V+AD++ G + C++LA+L +T
Sbjct: 883 LPPLDIGRSVTQQDMADNFLTFMKTDQLGVISNRHQVYADQNVMGTQCQQCLILAELCST 942
Query: 878 AVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
AVD KTG P ++ E+ + Y+S K G LYR I
Sbjct: 943 AVDFSKTGIAEYAPIEAMDEED----EVSNIKYYESQKTCGMLYRAI 985
>gi|326476492|gb|EGE00502.1| hypothetical protein TESG_07807 [Trichophyton tonsurans CBS 112818]
Length = 1207
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 226/807 (28%), Positives = 341/807 (42%), Gaps = 146/807 (18%)
Query: 389 VRRLVITPTKAYW---FLESK--------DVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
V R +TP Y + E+K D D F+RV F+DE P+
Sbjct: 418 VHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------PV 465
Query: 438 VKDITSN---SFSQK-TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVG 493
D ++N F Q+ GV KR GF + GR + FL FS + LR + WF +
Sbjct: 466 FFDPSANLEQIFHQRFAGVMKR-------GFEIAGREFEFLGFSHSSLRAQTCWFAAPFT 518
Query: 494 ETSV--LDIKNWMGEFT----AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN 547
++ L+ + +G ++ +K AAR+G FS T ++ + V + PD+KRN
Sbjct: 519 TSNGDHLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVKRN 578
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLR 607
+FSDG+G I+ DL + L P+ +QIR AG KG+V+ + G + LR
Sbjct: 579 DRIFSDGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLR 637
Query: 608 GSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM 665
SM KF + ++EIC + R P +LN QII +L L V E F +Q + L
Sbjct: 638 ESMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSA 697
Query: 666 LVASDVAFEVLTASCAEQGNTAA----IMLSAGFKPQTEPHLQGML---TYELGELKECQ 718
+++ A + L S + ++ G + +P L+ ++ T + +
Sbjct: 698 FNSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYR 757
Query: 719 CFIQVSES-SLENCFSKHG---------SRFAETKKLQV-INGFVVIAKNPCLRPGDVRI 767
I+V + +L + G E + ++ + VVI ++P L PGD+++
Sbjct: 758 ARIRVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREILVRDKVVITRSPALHPGDIQV 817
Query: 768 LEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+ AVD PE L L +C+ F Q GDR + SG DLDGDLY + +D L+P +K+ P
Sbjct: 818 VNAVDVPENSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVP--RKTIP 875
Query: 825 PMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILL 871
P EAK L V ++ LG+I H AD+SE G D+ C+ L
Sbjct: 876 PANYPRVEAKELDRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGTLDQACLKL 935
Query: 872 AKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM----------EIE-------------- 906
A L + AVD K+G V + S + P+ PDFM IE
Sbjct: 936 AHLHSVAVDYSKSGIAVNVLSIPRAPRVRPDFMAPSPRFRVADSIESIIGEKNSAMQDDD 995
Query: 907 ----------EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDL----- 951
+ + YKSN ILGRLYR I DE + D+ D +TD+
Sbjct: 996 DDDEDDSDRRKIRYYKSNNILGRLYRSI----DERSFLCQLRDVGAADTKTNTDVLRSIW 1051
Query: 952 -----EVPGSV--DFTADARNQKCSYDGQLNGLLGQYNVNR-----KEFRHIWSMPKYNS 999
EV G + T + + Y+ +L L+ +Y+ E+ +
Sbjct: 1052 NYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKSSITEYELFVGTILGHG 1111
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFE---KMNSDFELSDNEKNVLYEQKASAWYQVTYHR 1056
KQ + R K + R E+ ++ E M D E E L A W +
Sbjct: 1112 NKQ---RRRDKDNAKEMRDEYNRLVEFTISMIRDTESGGTE--ALERSIACFWVAIDGKS 1166
Query: 1057 EWVKKSLDLLEQGSARSVVLLSFAWIA 1083
K L A LLSF WIA
Sbjct: 1167 SGQKPG---LRSAHAHQDKLLSFPWIA 1190
>gi|326484092|gb|EGE08102.1| RNA-dependent RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1207
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 226/807 (28%), Positives = 339/807 (42%), Gaps = 146/807 (18%)
Query: 389 VRRLVITPTKAYW---FLESK--------DVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
V R +TP Y + E+K D D F+RV F+DE P+
Sbjct: 418 VHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------PV 465
Query: 438 VKDITSN---SFSQK-TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--K 491
D ++N F Q+ GV KR GF + GR + FL FS + LR + WF +
Sbjct: 466 FFDPSANLEQIFHQRFAGVMKR-------GFEIAGREFEFLGFSHSSLRAQTCWFAAPFT 518
Query: 492 VGETSVLDIKNWMGEFT----AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN 547
L+ + +G ++ +K AAR+G FS T ++ + V + PD+KRN
Sbjct: 519 TANGDHLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVKRN 578
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLR 607
+FSDG+G I+ DL + L P+ +QIR AG KG+V+ + G + LR
Sbjct: 579 DRIFSDGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLR 637
Query: 608 GSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM 665
SM KF + ++EIC + R P +LN QII +L L V E F +Q + L
Sbjct: 638 ESMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYST 697
Query: 666 LVASDVAFEVLTASCAEQGNTAA----IMLSAGFKPQTEPHLQGML---TYELGELKECQ 718
+++ A + L S + ++ G + +P L+ ++ T + +
Sbjct: 698 FNSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYR 757
Query: 719 CFIQVSES-SLENCFSKHG---------SRFAETKKLQV-INGFVVIAKNPCLRPGDVRI 767
I+V + +L + G E + ++ + VVI ++P L PGD+++
Sbjct: 758 ARIRVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREILVRDKVVITRSPALHPGDIQV 817
Query: 768 LEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+ AVD PE L L +C+ F Q GDR + SG DLDGDLY + +D L+P +K+ P
Sbjct: 818 VNAVDVPENSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVP--RKTIP 875
Query: 825 PMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILL 871
P EAK L V ++ LG+I H AD+SE G D+ C+ L
Sbjct: 876 PANYPRVEAKELDRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGTLDQACLKL 935
Query: 872 AKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM----------EIE-------------- 906
A L + AVD K+G V + S + P+ PDFM IE
Sbjct: 936 AHLHSVAVDYSKSGIAVNVLSIPRAPRVRPDFMAPSPRFRVADSIESIIGEKNSAMQDDD 995
Query: 907 ----------EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDL----- 951
+ + YKSN ILGRLYR I DE + D+ D +TD+
Sbjct: 996 DDDEDDSDRRKIRYYKSNNILGRLYRSI----DERSFLCQLRDVGAADTKTNTDVLRSIW 1051
Query: 952 -----EVPGSV--DFTADARNQKCSYDGQLNGLLGQYNVNR-----KEFRHIWSMPKYNS 999
EV G + T + + Y+ +L L+ +Y+ E+ +
Sbjct: 1052 NYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKSSITEYELFVGTILGHG 1111
Query: 1000 RKQGELQERLKHSYSAFRKEFRQVFE---KMNSDFELSDNEKNVLYEQKASAWYQVTYHR 1056
KQ + R K + R E+ ++ E M D E E L A W +
Sbjct: 1112 NKQ---RRRDKDNAKEMRDEYNRLVEFTISMIRDTESGGTE--ALERSIACFWVAIDGKS 1166
Query: 1057 EWVKKSLDLLEQGSARSVVLLSFAWIA 1083
K L A LLSF WIA
Sbjct: 1167 SGQKPG---LRSAHAHQDKLLSFPWIA 1190
>gi|358369173|dbj|GAA85788.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus kawachii IFO 4308]
Length = 745
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 175/586 (29%), Positives = 264/586 (45%), Gaps = 98/586 (16%)
Query: 577 PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQ 636
PPSA+Q R G KG++A + + +R S KF + H LEI W+++ LNRQ
Sbjct: 13 PPSAFQFRLGGCKGMLAV-SSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQYSMATLNRQ 71
Query: 637 IITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAG 694
+I ++STL + DE+F SM L+ + + A EVL T + M+S G
Sbjct: 72 LILVMSTLGIPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDG 131
Query: 695 FKPQTEPHLQGML----------------------TYELGELKECQCF-------IQVSE 725
F+ EP +L T LG + E I +
Sbjct: 132 FRRSKEPFFTSILALWRTWHIKYLKEKAKIVIDNGTNLLGVMDETGILKGYFYDKIPKED 191
Query: 726 SSLENCFSKHGSRFAETKKL---------QVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
+SLE + F + + +VI G ++A+NP L PGD+R++ AV+ PEL
Sbjct: 192 ASLEQKLAALPEIFLQVPRTSGSEGGAQYEVIEGLCILARNPSLHPGDIRVVRAVNVPEL 251
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
H L D +V PQ GDR + SG DLDGD Y V WD++LI PM T +A+ L
Sbjct: 252 HSLRDVVVLPQTGDRDIASMCSGGDLDGDDYLVIWDQDLI-HKDWFLDPMRYTSNKAQDL 310
Query: 837 -------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
++ + +L I +AHV AD+ E G +E CI LA+L + AVD K
Sbjct: 311 DHDVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNK 370
Query: 884 TGKIVTMPSHLKPKKYPDFMEIEEY--QTYKSNKILGRLYRQIKGAYDENISVSSEVDIN 941
TG+ M +L+P+++P FME + Q Y S KILG+LY ++ VD
Sbjct: 371 TGRPAIMTRNLQPRRWPHFMEKPKPKDQIYCSRKILGQLYDAVE-----------RVDFV 419
Query: 942 P-VDIHYDTDL---EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWS---M 994
P +++ +D + + S D A+N K +D + ++ Q+ + + EF +WS +
Sbjct: 420 PSLEMPFDERILNCSIEVSEDLYTFAKNLKNEFDTAMRRIMAQHEI-KTEFE-VWSTFIL 477
Query: 995 PKYNSRKQGELQERLKHSYSAFRKEFR-QVFEKMNSDFELSDNEKNVLYEQKASAWYQVT 1053
+ K + E + +A R+ FR Q + K+ D L A A Y+VT
Sbjct: 478 NHSHMSKDYKFHEEIGAISAAHRETFRKQCYNKV-------DGRTFELLAPLAVAMYRVT 530
Query: 1054 Y---------HREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARI 1090
+ HRE E + L+SF WI L R+
Sbjct: 531 HEEMTQALKKHRENSPPH----ETPKINQLPLISFPWILPHILGRV 572
>gi|299116728|emb|CBN76286.1| RNA-dependent RNA polymerase 2 [Ectocarpus siliculosus]
Length = 634
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 179/616 (29%), Positives = 268/616 (43%), Gaps = 145/616 (23%)
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
+DRFLRV F+DE + + LS + P R++ + DG + G
Sbjct: 78 SDRFLRVNFVDENMGRLQ---LSPLLVP------------------RLEGFMKDGLVIAG 116
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKV-GETSVLDIKNWMGEFTAKNI-AKYAARMGLCFSST 526
R+Y FLA+S +QLR H+ +F+++ G + I++WMG+ + ++ K+AAR+G SST
Sbjct: 117 RKYEFLAYSGSQLRGHACFFYAEGDGAPTADSIRSWMGDMSGIDVVGKHAARLGQSLSST 176
Query: 527 HATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA 586
+TVE+PP + +PD K Y F+DG G ++ LA
Sbjct: 177 TSTVEVPPA-LKKLVPDKKAGPYEFTDGCGMMSEGLA----------------------- 212
Query: 587 GYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNV 646
+G G + F HT +++ + R P +LNRQ ITLL TL V
Sbjct: 213 --RG-----------------GDVIPFPHAHTPMQVIQYARQLPCYLNRQFITLLGTLGV 253
Query: 647 SDEIFWTVQASMASKLNLML--VASDVAFEVLT-------ASCAEQGNT-------AAIM 690
D++ ++M S L+ +L + SD A + S + G A M
Sbjct: 254 PDKVIEERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAM 313
Query: 691 LSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVING 750
+ AG +TEP LQ +L + I + +H +R ++
Sbjct: 314 VRAGINIRTEPFLQSVL-----RATRDKAMIDL----------RHRTRIFVPDASCLLG- 357
Query: 751 FVVIAKNPCLRPGDVRILEAVD----RPELHHLCDCLVFPQKGDR--PHTNEASGSDLDG 804
++ + L+PG +A D R H+ + DR T E SG DLDG
Sbjct: 358 --IVDETGLLQPG-----QASDSLGCRSVNHYTANRASIMTNADRFGQCTQEMSGGDLDG 410
Query: 805 DLYYVTWDENLIPPSKKSC-------------PPMECTPAEAKPLTC------------- 838
DLY V WD++L+PP ++ P M P E KP T
Sbjct: 411 DLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPE-KPKTSASSSGKGVDMKEI 469
Query: 839 ------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS 892
++ + NLG+I NAH+V AD S +GA + C+ LA L + AVD PK+G P
Sbjct: 470 ADFFLKYIQNDNLGKIANAHLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFPD 529
Query: 893 HLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDL 951
LK YPDFM E+ TY S K++GRL+R A N + D + D L
Sbjct: 530 ELKVDSYPDFMCKEDNMTYLSKKLIGRLFRDTPPAGAANPQRRQQQDERFLGGFELDQSL 589
Query: 952 EVPGSVDFTADARNQK 967
PG DF +A ++
Sbjct: 590 LAPGYEDFLEEAEVER 605
>gi|403177737|ref|XP_003336185.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375173183|gb|EFP91766.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1297
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 173/545 (31%), Positives = 257/545 (47%), Gaps = 94/545 (17%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWF---FSKVGE-TSVLDIKNWMGEF-TAKNI-A 513
L++ L GR++ FL +S++ LR H AWF F GE + I+N +G F NI A
Sbjct: 548 LANCLLLAGRQFEFLCYSASALRSHQAWFVCPFIHRGELITATKIRNRIGSFPKVINIPA 607
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILK-L 572
+Y AR+G F++T V + P+++ + D++RNG VF+DG+G I+ LA +V L
Sbjct: 608 RYMARVGQAFTTTRKAVTLQPSQIKL-IEDVERNGSVFTDGVGTISLSLAKKVEHALAGP 666
Query: 573 DGSPPP-----SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEIC-SWT 626
GS PP S YQIR GYKG+++ + I + LR SMKKF+ +L+I +
Sbjct: 667 TGSKPPTELQASCYQIRLGGYKGMLSLDTTLEGDI-VRLRPSMKKFEGESYTLDIAEKFD 725
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
R P FLNRQ+I +L L +S ++F QA + M+ S + + G
Sbjct: 726 RPFPAFLNRQLIKILEDLGISGQVFLDAQAETVA----MVENSQGSMNQSSLVMERAGLG 781
Query: 687 AAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLE-NCFS--KHGSRFAETK 743
+A+ L PQ L ++ + E C F+Q S L +C K+ +R
Sbjct: 782 SAVEL-----PQILKQLGRLMDSDRPEEIRC-SFVQDSLDLLAVHCLRELKYNTRIPLPG 835
Query: 744 KLQVIN----------------------------GFVVIAKNPCLRPGDVRILEAVDRP- 774
++ G IA++PCL PGD++++ A+ P
Sbjct: 836 SFNLVGVADEDGCLLENQIFVPIQLPGQRKYCLKGRFAIARSPCLHPGDIQVVYAIGDPP 895
Query: 775 ----ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP 830
L L +C+VFP G R + +G DLDGDLY + D ++P S++ P
Sbjct: 896 VGSRRLASLVNCVVFPVIGKRSLPSCLAGGDLDGDLYTIITDPQMVPDSRRIYQPGSYES 955
Query: 831 AEAK----PLTCH---------VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
+ K P T H + +G I N H + AD+++ G D C+ LA+L +
Sbjct: 956 GQMKTTESPCTIHDGIDFFFHYILDNIVGMIANKHTIIADQADEGVLDRKCLDLAELHSQ 1015
Query: 878 AVDSPKTGKI--VTMPSHLKPKKYPDFMEIEEY----------------QTYKSNKILGR 919
AVD PKTG VT PK+ PDFM EY +TY S KILG+
Sbjct: 1016 AVDYPKTGMAVPVTKIPRCSPKR-PDFM-CPEYMFNDHLSDKEKAQQAERTYPSPKILGQ 1073
Query: 920 LYRQI 924
L+R I
Sbjct: 1074 LFRAI 1078
>gi|315045169|ref|XP_003171960.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311344303|gb|EFR03506.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1204
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 230/806 (28%), Positives = 341/806 (42%), Gaps = 147/806 (18%)
Query: 389 VRRLVITPTKAYW---FLESK--------DVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
V R ++TP Y + E+K D D F+RV F+DE P+
Sbjct: 418 VHRAMVTPCGIYLSGPYTETKNRILRKYLDNIDYFIRVEFLDETGD------------PV 465
Query: 438 VKDITSNSFSQKTGVF-KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--KVGE 494
D ++N S +F +R ++ G + GR + +L FS + LR + WF +
Sbjct: 466 FFDPSANLES----IFHQRFAGVMKRGIEIAGRVFEYLGFSHSSLRSQTCWFAAPFTTAN 521
Query: 495 TSVLDIKNWMGEFT----AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV 550
LD K +G ++ +K AAR+G FS T ++ + V + PD+KRNG V
Sbjct: 522 GDYLDAKTIIGNIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVKMKAPDVKRNGRV 581
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSM 610
FSDG+G I+ +L + L P+ +QIR AG KG+V+ + G + LR SM
Sbjct: 582 FSDGVGVISRELMYRIWNEYALRERVKPTVFQIRIAGAKGMVSL-DTRKKGEFLMLRESM 640
Query: 611 KKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVA 668
KF + ++EIC + R P +LN QII +L L V E F +Q S L +
Sbjct: 641 VKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEISFLYSTFSS 700
Query: 669 SDVAFEVLTASCAEQGNTAAIML----SAGFKPQTEPHLQGMLTYELGELKECQCFIQVS 724
+ A L S + +L S G + +P LQ ++ EL L + +
Sbjct: 701 IERAANFLEESPVPRSLRLPWLLLVLKSLGIRYSQDPFLQRVM--ELTMLLRLRDLKYRA 758
Query: 725 ESSLENCFSKHG---------------SRFAETKKLQV-INGFVVIAKNPCLRPGDVRIL 768
+ N + +G AE + ++ + VVI ++P L PGDV++
Sbjct: 759 RIRVPNAVTLYGIMDETGYLKENEIYCVYLAENGRREILVRDNVVITRSPALHPGDVQVA 818
Query: 769 EAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPP 825
AVD P L L +C+ F Q G R + SG DLDGDLY + +D L+P +K+ P
Sbjct: 819 NAVDVPANSPLRKLHNCVAFSQFGTRDLPSMLSGGDLDGDLYNIIYDTRLLP--QKTFSP 876
Query: 826 MECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLA 872
+ AEAK L V ++ LG+I H AD+SE G D C+ LA
Sbjct: 877 ADYPRAEAKELDRKVETEDIIDFFVTFMQQDQLGRIAITHQAIADQSERGTLDGVCLTLA 936
Query: 873 KLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM----------EIE--------------- 906
+L +TAVD K+G V + S K P+ PDFM IE
Sbjct: 937 RLHSTAVDYSKSGIAVDVMSIPKAPRVRPDFMAPSPRIRVEDSIESILREKESTVQDDDD 996
Query: 907 ------EYQTYKSNKILGRLYRQI-KGAYDENISVSSEVDINPVD-----IHYDTDLEVP 954
+ + YKS+ ILGRLYR I + ++ + + VD N + I + EV
Sbjct: 997 DDNDRAKIRYYKSHNILGRLYRSIDEQSFLHQLRDAGAVDNNNRNSVLKSIWRYVESEVD 1056
Query: 955 GSV--DFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGEL------- 1005
G + T + K Y+ +L LL +Y+ S P +S + EL
Sbjct: 1057 GFLWNHLTGICHDIKDIYEDKLRELLHKYS----------STPLKSSISEYELFVGTILG 1106
Query: 1006 -----QERLKHSYSAFRKEFRQVFE---KMNSDFELSDNEKNVLYEQKASAWYQVTYHRE 1057
+ R K + + R E+ ++ E M D E E L A W +
Sbjct: 1107 HGHKQRRRDKENANEMRDEYNRLVEFTISMIRDTESGGTE--ALERSIACFWVAINEQSA 1164
Query: 1058 WVKKSLDLLEQGSARSVVLLSFAWIA 1083
K L LLSF WIA
Sbjct: 1165 GQKAG---LRSAHTHQEKLLSFPWIA 1187
>gi|241620373|ref|XP_002408656.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503015|gb|EEC12509.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 168/546 (30%), Positives = 252/546 (46%), Gaps = 79/546 (14%)
Query: 500 IKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPP--TEVDHEL------PDIKRNGYV 550
++ +G+ ++ + +KY AR+G FS + V +P T VD ++ P IK N
Sbjct: 1 VRAAIGDLSSIRVPSKYMARLGQAFSQSMGYVTVPQACTRVDRDILLKGRKPGIKYN--- 57
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSM 610
FSDG+G+I+P + V L +G P SA QIRY G KG++ P + G ++ R SM
Sbjct: 58 FSDGVGRISPSVLARVHAALPAEGKP--SAIQIRYGGCKGMLVLDPTLE-GDQIVFRDSM 114
Query: 611 KKFKSCHTSLEICSWTRFQPGFLNRQIITLLS-------TLNVSDEIFWTVQASMASKLN 663
K+ S L I +R + LNR +IT+LS ++ D +F +Q
Sbjct: 115 FKYPSQSEELFILKTSRPRVVKLNRPMITILSQKMTRSGVQDIEDGVFMRMQQDCLEPY- 173
Query: 664 LMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML---------------- 707
L + +D L S + + AG EP + +L
Sbjct: 174 LDSLFNDKGTAALLQSESSLRMPYRELAEAGLDLHAEPFFRSLLWALHHRCLKDLKDKMN 233
Query: 708 --------------TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVV 753
E L+ Q +++ S + L+ S++ ++ G V+
Sbjct: 234 ILVPPRFGRTMFGVLDETATLQYGQVYVRYS-TDLDRFGPDDESQYRLCTTFRLRAGRVM 292
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
+ KNPC+ PGD+R+LEAVD P L H+ DC+VFPQ G RPH +E +GSDLDGD Y V W E
Sbjct: 293 VTKNPCIHPGDIRLLEAVDVPALSHIRDCVVFPQIGKRPHPDEMAGSDLDGDEYSVIWYE 352
Query: 814 NLIPPSKKSCPPMECTPAEAKP-------------LTCHVNHQNLGQICNAHVVHADRSE 860
L+ K++ PM+ +EA + ++ + +G + +AH+ AD +
Sbjct: 353 PLL--FKRNDDPMDFYSSEALEKEGTVQVEDMVDFMCTYIVNDIVGLMGSAHLAWADLLK 410
Query: 861 YGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE-EYQTYKSNKILGR 919
G + C++LAK + VD KTG + KP +YPDFME E TY S + LG
Sbjct: 411 QGVKSQRCLVLAKKCSECVDFAKTGSSTRLAQSEKPPRYPDFMEKHAEKYTYPSKRALGL 470
Query: 920 LYRQIKGAYDENISVSSEVDINPV-DIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLL 978
LYR +KG ++ PV D+ D L VPG +F AR Y L +L
Sbjct: 471 LYRNLKGMVADS--------AGPVGDVRPDRRLLVPGREEFVEGAREALREYKLALCSIL 522
Query: 979 GQYNVN 984
Y V
Sbjct: 523 TSYGVG 528
>gi|389747663|gb|EIM88841.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 890
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 171/560 (30%), Positives = 268/560 (47%), Gaps = 68/560 (12%)
Query: 389 VRRLVITPTKAYWF---LES--------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+RR ++ PT+ +E+ KD ADRFLRV F+ E S
Sbjct: 347 IRRCLVAPTRLILMPPQMETSNNLLRTFKDHADRFLRVQFIQEE---------SDLTVTR 397
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+ ++ G+F RV+ L G ++ GR+Y FL F +QL+ W ++ SV
Sbjct: 398 ETNEIDDALQGGRGLFARVRRTLKYGIHVAGRKYVFLCFGESQLKSKGCWMIAEKEGFSV 457
Query: 498 LDIKNWMGEFTAKN-IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDG 554
I WMG+ + IAK+AAR GLC S++ A E H++ G YVF+DG
Sbjct: 458 QGILKWMGDLDKERVIAKHAARQGLCLSTSRAIPLDLQVEFIHDITRTDSQGKEYVFTDG 517
Query: 555 IGKITPDLAMEVAQILKLDGSPPPSAYQIRYA-GYKGVVACWPAKDDGIR-----MSLRG 608
+G + ++A A+ + ++G SA Q+RY G KGV++ ++D +R + +R
Sbjct: 518 MGDCSQEVANVCARFMGIEGD--VSAVQVRYGTGIKGVISV--SEDPLMRGNPYTLRVRD 573
Query: 609 SMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVA 668
SM KFKS + L + P LNRQ+I L+ +L VS + + + +K+ +
Sbjct: 574 SMVKFKSSNPGLNALKVATYSPATLNRQVILLMESLGVSPDTLLDIFKTEKTKIQGL--E 631
Query: 669 SDVAFEVLTASCAEQGNTAAIMLSAGFK--PQTEPHLQGMLTYELGELKECQCFIQVSES 726
+ E L+ + A A L +GFK P ++ + L +LK + +I++ +S
Sbjct: 632 ASFGQERLSRASAFPLEKA---LDSGFKDDPLVASIVRLVKCRLLSDLK-WKAWIEIPKS 687
Query: 727 SL------ENCFSKHGSRFAETK----KLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
+ + G F + + V+ G +NPCL PGDVR ++AVD +
Sbjct: 688 AFLMGVVDPTGTLQEGEIFCQIQPPNSSPSVVVGDCTAYRNPCLHPGDVRSVKAVDYMSM 747
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT-PAEAK- 834
HL + +VF G RP N G D+DGD + + WD+ S+ PM+ T P K
Sbjct: 748 RHLRNVIVFSTLGHRPLPNMMGGGDVDGDFFSLIWDDRFRLGSEYE--PMDYTGPTPVKS 805
Query: 835 --PLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
P+T + + LG +CN H+ AD E+G + ++C+ LA LA+ AVD K
Sbjct: 806 ILPVTVDQTKKFFVDFIRNDLLGAVCNTHMALAD--EHGPYHDDCLKLAALASQAVDFVK 863
Query: 884 TGKIVTMPSHLKPKKYPDFM 903
TG V+ K +YPDFM
Sbjct: 864 TGVPVSHNDIPKVDEYPDFM 883
>gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like protein [Branchiostoma floridae]
Length = 1005
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 221/481 (45%), Gaps = 71/481 (14%)
Query: 654 VQASMASKLNLMLVASDV--AFEVLTASCA-------EQGNTAAIMLSAGFKPQTEPH-- 702
+ +A K+ L S V AF++ A C GNT I + K H
Sbjct: 538 ISVPLAKKVAAALGVSPVPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRGSMKKFESEHKT 597
Query: 703 --------LQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQ----VING 750
+ G + E G+L+ Q FIQ S E K Q V G
Sbjct: 598 LEVTSGRIMMGTMD-ETGKLQYGQVFIQYSR---------------EVDKPQADKVVHQG 641
Query: 751 FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVT 810
V + KNP PGD+R AVD PEL H+ DC+VFP +G RPH +E SGSDLDGD+Y+VT
Sbjct: 642 QVTVTKNPYFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVT 701
Query: 811 WDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHAD 857
W E LI P +++ P M+ T + L ++ LG I NAH+VHAD
Sbjct: 702 WREGLILP-RENRPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHAD 760
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKIL 917
+ + G F + CI LA+L + AVD+PKTG+ + L+P+ YPDFM + Y+S +I+
Sbjct: 761 KEDQGIFSQKCIDLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERII 820
Query: 918 GRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGL 977
GRL+R+ + D S DI D DL G + DA+ Q Y+ + +
Sbjct: 821 GRLFRKCQ-ELDSANQRSGTDDIVYHTSRIDHDLVREGFDSYIEDAQTQLNIYNNMMMSI 879
Query: 978 LGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDF------ 1031
+ Y + + + K R G L+ R F+ ++ K ++F
Sbjct: 880 MSLYGITSEGEVVSGCILKVKQR-LGLLKNERFEVAEYVRARFKTLWRKTRAEFFKQFDV 938
Query: 1032 -ELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARI 1090
ELS+ + +KASAWY VTY K LD S LLSF W+ D LA +
Sbjct: 939 EELSEERRKEEQLKKASAWYMVTYSD--ANKPLD-------PSPKLLSFPWVVYDVLASL 989
Query: 1091 K 1091
K
Sbjct: 990 K 990
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 141/259 (54%), Gaps = 39/259 (15%)
Query: 384 DDIAEVRRLVITPTKAYWF-----LESKDV----ADRFLRVTFMDEG---LQTMNANVLS 431
D R++V+TPT+ + +E++ V D F+RV F DE L N N
Sbjct: 365 DHYVYARKVVVTPTQMLFLKPEPIVENRVVREYGVDNFIRVAFRDEDFSKLAVTNPNS-- 422
Query: 432 YYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK 491
++ +TS RVK +L G + R + +L S++Q+R+H W ++
Sbjct: 423 ------IRCVTS-----------RVKDVLERGIRIGERHFKYLGSSNSQMREHGCWMYAA 465
Query: 492 VGET--SVLDIKNWMGEFTAKN-IAKYAARMGLCFSSTHATVEIPPTEVDHEL-PDIKRN 547
V +T S DI+ WMG+ + + +A Y +R+G FSS+ V + + EL D++ +
Sbjct: 466 VDKTTTSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSRNAVSVSVEDRSVELIADVETS 525
Query: 548 G--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMS 605
+ FSDGIGKI+ LA +VA L + SP PSA+QIRYAG KGV+A P + R+
Sbjct: 526 SGTHTFSDGIGKISVPLAKKVAAALGV--SPVPSAFQIRYAGCKGVLAQDPTLGNTDRIQ 583
Query: 606 LRGSMKKFKSCHTSLEICS 624
+RGSMKKF+S H +LE+ S
Sbjct: 584 IRGSMKKFESEHKTLEVTS 602
>gi|327354796|gb|EGE83653.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1240
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 201/684 (29%), Positives = 312/684 (45%), Gaps = 132/684 (19%)
Query: 336 CQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVIT 395
+P EV V+AL + +++ + A V+E + + + P ++ + R+ +T
Sbjct: 380 VEPSEVDVSAL--VATFRNALEAA------VREHKMASTNRHTNPNHVS----IHRVQVT 427
Query: 396 PTKAYW---FLESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSN 444
P Y ++ESK+ D FLRV FMDE + + + Y + I
Sbjct: 428 PCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDE-----SGDPVRYDPRASIDLI--- 479
Query: 445 SFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL----DI 500
F Q R K +L +G N+ GR++ FL FS + LR + WF + +L I
Sbjct: 480 -FQQ------RFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTI 532
Query: 501 KNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKIT 559
+G F N AK AAR+G FS T ++ I E+ + D+KRN VFSDG+G I+
Sbjct: 533 IQNLGRFDHINSPAKQAARIGQTFSETLTSIPIS-EEIISVVQDVKRNDRVFSDGVGTIS 591
Query: 560 PDLAMEVAQILKLDGSPPPSAYQIRYA-GYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT 618
P + + + L P+ +QIR A G KG+V+ +++ G + LR SM KF +
Sbjct: 592 PSVMYMIWKDYSLRTMVKPTVFQIRIAAGAKGMVSL-DSRNKGESLVLRPSMIKFPVTTS 650
Query: 619 ----SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAF 673
++EIC S R P FLN Q+I +L L V +F +Q +L ++ A
Sbjct: 651 FNAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAA 710
Query: 674 EVLTASCAEQGNTA---------AIMLSAGFKPQTEPHLQGMLTY----ELGELKECQCF 720
+ L E N A +I+ + G + + L+ ++ +L +LK +
Sbjct: 711 KFL-----EDTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLK-YRAR 764
Query: 721 IQVSESSL------ENCFSKHGSRFAET-----KKLQVINGFVVIAKNPCLRPGDVRILE 769
I+V ++ E + K G F + ++ ++N VV+ ++P + PGDV+I +
Sbjct: 765 IRVPKAVTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAK 824
Query: 770 AVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
AVD P L L +C+ F Q GDR + SG DLDGDLY V +++ LIP + PP
Sbjct: 825 AVDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFEDTLIP--RVISPPA 882
Query: 827 ECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAK 873
+ + K L + LG+I H AD+ G FD C+LLA+
Sbjct: 883 QYPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAE 942
Query: 874 LAATAVDSPKTGKIVTMPSHLK-PKKYPDFME-------------IEEY----------- 908
L +TAVD K+G V + K P+ PDF +EE+
Sbjct: 943 LHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDDDD 1002
Query: 909 --------QTYKSNKILGRLYRQI 924
+ YKS KILG+LYR I
Sbjct: 1003 EEDERPTARYYKSEKILGKLYRAI 1026
>gi|396482889|ref|XP_003841572.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
gi|312218147|emb|CBX98093.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
Length = 1248
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 211/748 (28%), Positives = 321/748 (42%), Gaps = 161/748 (21%)
Query: 305 SFEIMFLVNAVMHKGILNQHQLSD---SFFDLLRCQPREVIVTALKHI---YSYKRPVFD 358
+F + F + A++ +G + +L +L R E+ +AL+ + P D
Sbjct: 343 NFAVRFQLTALLLEGYIKPVKLIGLIPHVLNLARIHGAELTASALRQLARSIPMPSPSRD 402
Query: 359 AY------------EKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESK 406
A E ++D +E + L+ + + +A + ITPT
Sbjct: 403 ASQFTIEAFVALLNESIQDSKERELTGYDLSRKQRKHNHLALTYKATITPTGMLLRGPDW 462
Query: 407 DVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKR 455
DV++R F+RV F DE + LS + P + + V++R
Sbjct: 463 DVSNRVLRKYGKHTECFMRVFFADE-------DGLSVFFDP---------RASQDRVYER 506
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV----LDIKNWMGEFT-AK 510
+ +L +G + GRR+ FL FS LR H AWF + + + DI +G+F+ +
Sbjct: 507 FRGVLRNGITVAGRRFDFLGFSHASLRSHQAWFMTPFIKDGISICARDIIEDLGDFSHIR 566
Query: 511 NIAKYAARMGLCFSSTHATVEIPPTE-VDHELPDIKRNGYVFSDGIGKITPDLAMEVAQI 569
A+ AAR+G FS T +V +P + V D+KRNG FSDG G I+ +L +V
Sbjct: 567 CSARCAARIGQAFSDTIFSVRVPDSAYVTESKVDVKRNGRYFSDGCGTISLELMRKVWNA 626
Query: 570 LKLDGSPP------PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF--KSCHTSLE 621
L PP P+ QIRY G KGV++ G ++ +R SM K+ K LE
Sbjct: 627 L-----PPERREQRPTVLQIRYRGAKGVLSL-DTSLVGEQLHVRQSMTKYIAKEGWKDLE 680
Query: 622 ICSWTRFQP--GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTAS 679
+C ++P FLN Q I +L L V + F +Q L L+ A L S
Sbjct: 681 LCG-AAYKPLTVFLNHQFIKILEDLGVPERNFKAIQNEAVDTLKLITEHPINAASFLEYS 739
Query: 680 ----CAEQGNTAAIMLSAGFKPQTE------------------------PHLQGMLTY-- 709
A +M G + P QG L Y
Sbjct: 740 HSSVYARTPRLFELMHQIGLSFHADRFLTDIVEVAAMSNLRSLKYRARIPISQGYLLYGI 799
Query: 710 --ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRI 767
E G LKE + ++ H + +++K+ +I V+I + P L PGDV+I
Sbjct: 800 MDETGILKEGEVYVATKS---------HDAIGHKSRKI-LIGDRVIITRAPALHPGDVQI 849
Query: 768 LEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI-----PPS 819
++AVD PE L L +C+VF Q+G R ++ SG DLDGDL+++ +D LI PP+
Sbjct: 850 VKAVDVPEYSPLRALHNCVVFSQQGARDLPSQLSGGDLDGDLFHIIYDSRLIPDFTVPPA 909
Query: 820 K-KSCPPMEC-TPAEAKPLTC----HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAK 873
KS PP + P + + ++N LGQI N H + AD G D +CILLA+
Sbjct: 910 DYKSEPPKDLGRPVQVNDMVDFFVEYMNMDRLGQISNKHKIRADIKPNGTRDPDCILLAQ 969
Query: 874 LAATAVDSPKTGKIVTMPSHLKPKKY--PDFM--------------EIEEYQT------- 910
LA+ AVD K+G + + + PDFM E+EE +
Sbjct: 970 LASDAVDFSKSGNPADINKVPRGSDWIRPDFMAPGSNLVINELGSAELEELEQDDVDAPD 1029
Query: 911 --------------YKSNKILGRLYRQI 924
Y+S+K+LG LYR I
Sbjct: 1030 RISVLDADKARMRYYRSDKVLGVLYRDI 1057
>gi|302660624|ref|XP_003021989.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
gi|291185913|gb|EFE41371.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
Length = 1233
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 190/657 (28%), Positives = 290/657 (44%), Gaps = 122/657 (18%)
Query: 389 VRRLVITPTKAYW---FLESK--------DVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
V R +TP Y + E+K D D F+RV F+DE P+
Sbjct: 418 VHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------PV 465
Query: 438 VKDITSN---SFSQK-TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--K 491
D ++N F Q+ GV KR G + GR + FL FS + LR + WF +
Sbjct: 466 FFDPSANLEQIFHQRFAGVMKR-------GIEIAGREFEFLGFSHSSLRAQTCWFAAPFT 518
Query: 492 VGETSVLDIKNWMGEFT----AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN 547
L+ + +G ++ +K AAR+G FS T ++ + V PD+KRN
Sbjct: 519 TANGDYLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRN 578
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLR 607
+FSDG+G I+ DL + L P+ +QIR AG KG+V+ + G + LR
Sbjct: 579 DRIFSDGVGVISRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLR 637
Query: 608 GSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM 665
SM KF + ++EIC + R P +LN QII +L L V E F +Q + L
Sbjct: 638 ESMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLEVPFEAFHQLQQDEINFLYST 697
Query: 666 LVASDVAFEVLTASCAEQGNTAA----IMLSAGFKPQTEPHLQGML---TYELGELKECQ 718
+++ A + L S + ++ G + +P L+ ++ T + +
Sbjct: 698 FNSTERAAKFLEDSPVPKSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYR 757
Query: 719 CFIQVSESSL------ENCFSKHGSRF-----AETKKLQVINGFVVIAKNPCLRPGDVRI 767
I+V + E + K + + ++ ++ VVI ++P L PGD+++
Sbjct: 758 ARIRVPNAVTLYGIMDETGYLKENEIYCAYLGGDGRREILVRDNVVITRSPALHPGDIQV 817
Query: 768 LEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+ AVD P L L +C+ F Q GDR + SG DLDGDLY + +D L+P +K+ P
Sbjct: 818 VNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVP--RKTIP 875
Query: 825 PMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILL 871
P + EAK L V ++ LG+I H AD+SE+G D+ C+ L
Sbjct: 876 PADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGTLDQACLKL 935
Query: 872 AKLAATAVDSPKTG---KIVTMPSHLKPKKYPDFM----------EIE------------ 906
A L + AVD K+G + ++P P+ PDFM IE
Sbjct: 936 AHLHSVAVDYSKSGIPVNVFSIPR--APRVRPDFMAPSPRFRVADSIESIIGEKKSTMQD 993
Query: 907 ------------EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDL 951
+ YKSN ILGRLYR I DE + D VDI+ +T++
Sbjct: 994 DDDEDEDDSDHRRIRYYKSNNILGRLYRSI----DERSFLCQLRDAGAVDINTNTNV 1046
>gi|74830367|emb|CAI39056.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
Length = 1367
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 176/615 (28%), Positives = 287/615 (46%), Gaps = 103/615 (16%)
Query: 390 RRLVITPTKAYWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIV 438
RR+ +TP+ +F + ++ + FLRV + DE Q M N+ P +
Sbjct: 525 RRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDEN-QDMVLNI------PYI 577
Query: 439 KDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF--FSKVGETS 496
+F +F +K + G+ + +SS+ LR + WF F+ G+
Sbjct: 578 TQTYYYNF-----MFPTLK--------ILGQHFELFTWSSSSLRAGTCWFIDFNGAGKQR 624
Query: 497 VLDIKNWMGEFTA---KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSD 553
DI +G FT IAK AAR+G S++ + + + + + +N +++D
Sbjct: 625 T-DIIKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDLVDKNNKLYTD 683
Query: 554 GIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF 613
GIGKI+ DL ++ Q ++++ SA QIRY G KG++ + + + LR SM K+
Sbjct: 684 GIGKISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKT-IVLRRSMIKY 742
Query: 614 ---KSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD 670
K ++I + +F+ G+LNRQII LL TL V+++ F +Q K+ + +
Sbjct: 743 NPAKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDA 802
Query: 671 VAFEVLTAS-CAEQGNTAAIM--LSAGFKPQTEPHL--QGMLT----YELGELKECQCFI 721
++ + C EQ + IM L A E ++ QG+L+ L +L++ +
Sbjct: 803 SIYKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNILCQGVLSKLKQRGLLQLRKKTSIL 862
Query: 722 QVSESSLENCFSKHGSRFA---------ETKKLQV----INGFVVIAKNPCLRPGDVRIL 768
+ + +H E QV I G V++ +NPCL PGD++ L
Sbjct: 863 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPENIQGEVLVTRNPCLHPGDIKKL 922
Query: 769 EAVDRPEL----------HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
A+ E+ L +CLVFP G+ + +G DLDGDLY++ WD L+PP
Sbjct: 923 NAISTQEILKRNGSKNPYSQLINCLVFPACGNSLPC-QIAGGDLDGDLYFICWDNRLLPP 981
Query: 819 SK-KSCPPMECTPAEAKP----------------------------LTCHVNHQNLGQIC 849
+ KS P + + L ++N + LG I
Sbjct: 982 VQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFLYFYLNSETLGLID 1041
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ 909
N+H+ AD+S+ A D NC+ LA+L + AVD KTGK V + L K +PD+ME E+
Sbjct: 1042 NSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLSKIFPDYMEKEQSV 1101
Query: 910 TYKSNKILGRLYRQI 924
TY+S I+G+LYRQ+
Sbjct: 1102 TYESQTIIGKLYRQV 1116
>gi|145498970|ref|XP_001435471.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402604|emb|CAK68074.1| unnamed protein product [Paramecium tetraurelia]
Length = 1343
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 176/615 (28%), Positives = 287/615 (46%), Gaps = 103/615 (16%)
Query: 390 RRLVITPTKAYWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIV 438
RR+ +TP+ +F + ++ + FLRV + DE Q M N+ P +
Sbjct: 501 RRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDEN-QDMVLNI------PYI 553
Query: 439 KDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF--FSKVGETS 496
+F +F +K + G+ + +SS+ LR + WF F+ G+
Sbjct: 554 TQTYYYNF-----MFPTLK--------ILGQHFELFTWSSSSLRAGTCWFIDFNGAGKQR 600
Query: 497 VLDIKNWMGEFTA---KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSD 553
DI +G FT IAK AAR+G S++ + + + + + +N +++D
Sbjct: 601 T-DIIKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDLVDKNNKLYTD 659
Query: 554 GIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF 613
GIGKI+ DL ++ Q ++++ SA QIRY G KG++ + + + LR SM K+
Sbjct: 660 GIGKISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKT-IVLRRSMIKY 718
Query: 614 ---KSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD 670
K ++I + +F+ G+LNRQII LL TL V+++ F +Q K+ + +
Sbjct: 719 NPAKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDA 778
Query: 671 VAFEVLTAS-CAEQGNTAAIM--LSAGFKPQTEPHL--QGMLT----YELGELKECQCFI 721
++ + C EQ + IM L A E ++ QG+L+ L +L++ +
Sbjct: 779 SIYKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNILCQGVLSKLKQRGLLQLRKKTSIL 838
Query: 722 QVSESSLENCFSKHGSRFA---------ETKKLQV----INGFVVIAKNPCLRPGDVRIL 768
+ + +H E QV I G V++ +NPCL PGD++ L
Sbjct: 839 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPENIQGEVLVTRNPCLHPGDIKKL 898
Query: 769 EAVDRPEL----------HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
A+ E+ L +CLVFP G+ + +G DLDGDLY++ WD L+PP
Sbjct: 899 NAISTQEILKRNGSKNPYSQLINCLVFPACGNSLPC-QIAGGDLDGDLYFICWDNRLLPP 957
Query: 819 SK-KSCPPMECTPAEAKP----------------------------LTCHVNHQNLGQIC 849
+ KS P + + L ++N + LG I
Sbjct: 958 VQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFLYFYLNSETLGLID 1017
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ 909
N+H+ AD+S+ A D NC+ LA+L + AVD KTGK V + L K +PD+ME E+
Sbjct: 1018 NSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLSKIFPDYMEKEQSV 1077
Query: 910 TYKSNKILGRLYRQI 924
TY+S I+G+LYRQ+
Sbjct: 1078 TYESQTIIGKLYRQV 1092
>gi|312079416|ref|XP_003142164.1| RNA dependent RNA polymerase [Loa loa]
Length = 1486
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 209/732 (28%), Positives = 328/732 (44%), Gaps = 121/732 (16%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV-------GET--SVLDIKNWMGEFTA- 509
L G ++ R Y FLA+S++Q+RD + +S G+ +V DI+ WMG+FTA
Sbjct: 505 LGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVVNDEVHGQMICNVEDIRRWMGDFTAS 564
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV---------FSDGIGKITP 560
K++ K +RMG CF+ T+ + D ++ D G V FSDG+G+I+
Sbjct: 565 KSVPKMMSRMGQCFTQAQPTIMLEKN--DWKVEDDIMGGIVHPETGEVFNFSDGVGRISK 622
Query: 561 DLAMEVAQILKLDGSPPPSAYQ-----------IRYAGYKGVVACWPAKDDGIRMSLRGS 609
A +A++L L P PS YQ ++Y+ V P + +
Sbjct: 623 KYADRIAEVLDL--HPTPSCYQEDEESAAEIEVVKYSMPAPVCLSRPL------IMILDQ 674
Query: 610 MKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNL-MLVA 668
+ + +S H +ICS L ++ L + + ++ + + M+ ++ L +
Sbjct: 675 VSEKQSRHLHKKICSRIH---SLLELELNKLSAMMFDENDAAEELSSRMSLPIDFHQLHS 731
Query: 669 SDVAF------EVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQ 722
S + F L + + S F P + H + + G L+ Q FIQ
Sbjct: 732 SGITFTNEPFFRSLLIAIHRYNIKLHLSKSKIFLPASMGHTMYGVVDDTGLLQHGQVFIQ 791
Query: 723 VSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDC 782
S S R+ KK+ + G V++ KNPC GDVR+ EAV + L HLCD
Sbjct: 792 YSPSI----------RYVSGKKI-IYTGPVMVTKNPCHVAGDVRMFEAVYQDALSHLCDV 840
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK-------KSCPPMECTPAEAKP 835
+VFP+ G RPH +E +GSDLDGD Y V +D+ L + KS P TP
Sbjct: 841 IVFPRYGPRPHCDEMAGSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYDTPPTTGD 900
Query: 836 LT----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG-KIVTM 890
+ +++ ++G++ NAH++ DR G F E C +A+ A AVD PKTG + +
Sbjct: 901 MIDFFLKYLSQDSIGRMSNAHLIMCDR--LGLFHEICDSIARKCAVAVDFPKTGVQAKPL 958
Query: 891 PSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDT 949
H + PD+M+ +Y+S ++LG+LYR+ + D + +V + D YD
Sbjct: 959 ILHEQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQKVEDISEAVQGAKFADYYDPQLYDE 1018
Query: 950 DL--EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK---------EFRHIWSMPK-- 996
L E P + + RN+ Y ++ LL +Y ++ + + I M K
Sbjct: 1019 SLFHEQPKLIQRSLRLRNE---YYSRIQQLLDEYGISDEASVISGHSLAIKRIVEMEKDD 1075
Query: 997 ---YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDN------EKNVLYEQKAS 1047
Y+S K EL R ++ FR+EF + F + SDF D N+ KA
Sbjct: 1076 YSFYHSDKIVEL--RYSRIFAYFRREFFKEFGE-ESDFVSVDALGKRGMRWNMALITKAK 1132
Query: 1048 AWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKP-- 1105
AWY VTY + S SF WI D L IK +++A + KS P
Sbjct: 1133 AWYAVTYASAFRSSS------------EFRSFPWIVWDILLIIK---RQIALMLKSPPPL 1177
Query: 1106 VNNLARYVADRI 1117
VN L ++ I
Sbjct: 1178 VNPLVIHLTQAI 1189
>gi|302510543|ref|XP_003017223.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
gi|291180794|gb|EFE36578.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
Length = 1233
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 191/655 (29%), Positives = 291/655 (44%), Gaps = 118/655 (18%)
Query: 389 VRRLVITPTKAYW---FLESK--------DVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
V R +TP Y + E+K D D F+RV F+DE P+
Sbjct: 418 VHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------PV 465
Query: 438 VKDITSN---SFSQK-TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--K 491
D ++N F Q+ GV KR G + GR + FL FS + LR + WF +
Sbjct: 466 FFDPSANLEQIFHQRFAGVMKR-------GIEIAGREFEFLGFSHSSLRAQTCWFAAPFT 518
Query: 492 VGETSVLDIKNWMGEFT----AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN 547
L+ + +G ++ +K AAR+G FS T ++ + V PD+KRN
Sbjct: 519 TANGDYLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRN 578
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLR 607
+FSDG+G I+ DL + L P+ +QIR AG KG+V+ + G + LR
Sbjct: 579 DRIFSDGVGVISCDLMHRIWNEYALRERVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLR 637
Query: 608 GSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM 665
SM KF + ++EIC + R P +LN QII +L L V E F +Q + L
Sbjct: 638 ESMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQRDEINFLYST 697
Query: 666 LVASDVAFEVLTASCAEQGNTAA----IMLSAGFKPQTEPHLQGML---TYELGELKECQ 718
+++ A + L S + ++ G + +P L+ ++ T + +
Sbjct: 698 FSSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYR 757
Query: 719 CFIQVSES-SLENCFSKHG---------SRFAETKKLQV-INGFVVIAKNPCLRPGDVRI 767
I+V + +L + G E + ++ + VVI ++P L PGD+++
Sbjct: 758 ARIRVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREILVRDNVVITRSPALHPGDIQV 817
Query: 768 LEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+ AVD P L L +C+ F Q GDR + SG DLDGDLY + +D L+P +K+ P
Sbjct: 818 VNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVP--RKTIP 875
Query: 825 PMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILL 871
P + EAK L V ++ LG+I H AD+SE+G D+ C+ L
Sbjct: 876 PADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGTLDQACLKL 935
Query: 872 AKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM----------EIE-------------- 906
A L + AVD K+G V + S + P+ PDFM IE
Sbjct: 936 AHLHSVAVDYSKSGIAVNVLSIPRAPRVRPDFMAPSPRFRVADSIESIIGEKKSTMQDDD 995
Query: 907 ----------EYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDL 951
+ + YKSN +LGRLYR I DE + D VDI+ +T++
Sbjct: 996 DDDEDDSDHRKIRYYKSNNVLGRLYRSI----DERSFLCQLRDAGAVDINTNTNV 1046
>gi|393912446|gb|EFO21905.2| RNA dependent RNA polymerase [Loa loa]
Length = 1514
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 209/732 (28%), Positives = 328/732 (44%), Gaps = 121/732 (16%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV-------GET--SVLDIKNWMGEFTA- 509
L G ++ R Y FLA+S++Q+RD + +S G+ +V DI+ WMG+FTA
Sbjct: 533 LGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVVNDEVHGQMICNVEDIRRWMGDFTAS 592
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV---------FSDGIGKITP 560
K++ K +RMG CF+ T+ + D ++ D G V FSDG+G+I+
Sbjct: 593 KSVPKMMSRMGQCFTQAQPTIMLEKN--DWKVEDDIMGGIVHPETGEVFNFSDGVGRISK 650
Query: 561 DLAMEVAQILKLDGSPPPSAYQ-----------IRYAGYKGVVACWPAKDDGIRMSLRGS 609
A +A++L L P PS YQ ++Y+ V P + +
Sbjct: 651 KYADRIAEVLDL--HPTPSCYQEDEESAAEIEVVKYSMPAPVCLSRPL------IMILDQ 702
Query: 610 MKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNL-MLVA 668
+ + +S H +ICS L ++ L + + ++ + + M+ ++ L +
Sbjct: 703 VSEKQSRHLHKKICSRIH---SLLELELNKLSAMMFDENDAAEELSSRMSLPIDFHQLHS 759
Query: 669 SDVAF------EVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQ 722
S + F L + + S F P + H + + G L+ Q FIQ
Sbjct: 760 SGITFTNEPFFRSLLIAIHRYNIKLHLSKSKIFLPASMGHTMYGVVDDTGLLQHGQVFIQ 819
Query: 723 VSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDC 782
S S R+ KK+ + G V++ KNPC GDVR+ EAV + L HLCD
Sbjct: 820 YSPSI----------RYVSGKKI-IYTGPVMVTKNPCHVAGDVRMFEAVYQDALSHLCDV 868
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK-------KSCPPMECTPAEAKP 835
+VFP+ G RPH +E +GSDLDGD Y V +D+ L + KS P TP
Sbjct: 869 IVFPRYGPRPHCDEMAGSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYDTPPTTGD 928
Query: 836 LT----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG-KIVTM 890
+ +++ ++G++ NAH++ DR G F E C +A+ A AVD PKTG + +
Sbjct: 929 MIDFFLKYLSQDSIGRMSNAHLIMCDR--LGLFHEICDSIARKCAVAVDFPKTGVQAKPL 986
Query: 891 PSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDT 949
H + PD+M+ +Y+S ++LG+LYR+ + D + +V + D YD
Sbjct: 987 ILHEQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQKVEDISEAVQGAKFADYYDPQLYDE 1046
Query: 950 DL--EVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRK---------EFRHIWSMPK-- 996
L E P + + RN+ Y ++ LL +Y ++ + + I M K
Sbjct: 1047 SLFHEQPKLIQRSLRLRNE---YYSRIQQLLDEYGISDEASVISGHSLAIKRIVEMEKDD 1103
Query: 997 ---YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDN------EKNVLYEQKAS 1047
Y+S K EL R ++ FR+EF + F + SDF D N+ KA
Sbjct: 1104 YSFYHSDKIVEL--RYSRIFAYFRREFFKEFGE-ESDFVSVDALGKRGMRWNMALITKAK 1160
Query: 1048 AWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKP-- 1105
AWY VTY + S SF WI D L IK +++A + KS P
Sbjct: 1161 AWYAVTYASAFRSSS------------EFRSFPWIVWDILLIIK---RQIALMLKSPPPL 1205
Query: 1106 VNNLARYVADRI 1117
VN L ++ I
Sbjct: 1206 VNPLVIHLTQAI 1217
>gi|316989903|gb|ADU77017.1| RNA-dependent RNA polymerase 1c [Cucumis sativus]
Length = 400
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 186/372 (50%), Gaps = 55/372 (14%)
Query: 757 NPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
NPCL PGDVR+L+A+D LHH+ DC+VFPQKG RPH NE SGSDLDGDLY+V WD L
Sbjct: 41 NPCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELT 100
Query: 817 PPSKKSCPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHVVHADRSEYGA 863
K PM PA L V + LG I NAH V AD++ A
Sbjct: 101 --CIKQVKPMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKA 158
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQ 923
CI LAKL + AVD PKTG +P +L+ +YPDFM+ TY SN +LG+L+R
Sbjct: 159 MSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRG 218
Query: 924 IKGAYDENISVSSEVDINPVDIH------YDTDLEVPGSVDFTADARNQKCSYDGQLNGL 977
+K VSS+V + YD D+EV G + +A + K YD +L L
Sbjct: 219 VK-------DVSSDVSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNL 271
Query: 978 LGQYNVNRKE---FRHIWSMPK-YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFEL 1033
+ Y + + +I M K ++ RK E++ + + RKE R F
Sbjct: 272 MDYYGIKTEPELVSGNILKMAKSFDKRKD---LEQIAFAMKSLRKEVR---------FWF 319
Query: 1034 SDNEKNVLYEQ------KASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYL 1087
++NE Y+ +ASAWY VTYH ++ +G+ R LSF W D L
Sbjct: 320 NENESKSTYDDIQDEYARASAWYCVTYHPDY----WGCYNEGTKRD-HFLSFPWCVADKL 374
Query: 1088 ARIKIKCQEMAN 1099
+IK + M N
Sbjct: 375 IQIKREKMSMRN 386
>gi|321261399|ref|XP_003195419.1| hypothetical protein CGB_G5150C [Cryptococcus gattii WM276]
gi|317461892|gb|ADV23632.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1120
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 225/823 (27%), Positives = 355/823 (43%), Gaps = 143/823 (17%)
Query: 361 EKLKDVQECLIKNPK-LNEGPKNID-DIAEVRRLVITPTKAY----WFLESKDVADRF-- 412
+K++D++ + K L P I + +R +++TPT+ + S V R+
Sbjct: 340 QKIRDIKHLIPKLAAFLRRRPPYIQPHLVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHD 399
Query: 413 -----LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
+RV F DE + A+ + +S + G+ RV+ L G +
Sbjct: 400 KLDGIIRVQFTDEEDRLFIADYMKLV----------DSINPAVGIMARVRRALQFGLIIG 449
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTH 527
G + +A S++Q ++H+ WF + L+++NWMG +AK+AARMGL FS++
Sbjct: 450 GETFYPVASSASQQKEHAMWFINN-KIIDGLELRNWMGTVHETVVAKHAARMGLPFSTSR 508
Query: 528 -ATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL--KLDGSPPPSAYQIR 584
++I + ELPDI+RNG F+DG G ++ + A L K + PSA Q R
Sbjct: 509 IVNMKI---NIGEELPDIERNGRCFTDGCGIAGREVLNQAALALNEKFGINAQPSAIQFR 565
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
G KGV++ W + + LR SM KF+S L + ++Q FLNRQ I ++
Sbjct: 566 LGGAKGVLSDWSQLVNEYEIRLRPSMIKFRSDLADLNVIRIAKYQAAFLNRQFINIMCAN 625
Query: 645 NVSDEIFWTV-----------------QASMASKLNLMLVASDVAFEVLTASCAEQG--- 684
V E+ + A + L+ + +D L S +
Sbjct: 626 GVPHELIIGIFEDAIADIKGFRDRVWNNAITENDEQLIALCNDFPLAQLIKSGFSENPLV 685
Query: 685 -NTAAIM---------LSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSK 734
+ AAI+ A K +L G+ E G LKE + F Q E+
Sbjct: 686 LDVAAIIECRALQDLKWRARVKLSDGVYLIGIAD-ETGTLKEGEIFCQFQEND------- 737
Query: 735 HGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT 794
E+ V+N +V C DVR AVDRPEL HL + +VF +G R
Sbjct: 738 ------ESPPKVVVNEVLVCRAPAC----DVRRAWAVDRPELRHLKNVIVFSTQGMRDMP 787
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT---PAEAKPLTC-HVN--------H 842
+ G DLDGD Y + WD+ + S K PM+ P K +T H+N +
Sbjct: 788 SMLGGGDLDGDDYTLIWDQRFV-QSLKVYDPMDYEAPDPISVKHVTQKHLNENFVQYVLN 846
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
LGQ+ N H+ +D Y FD C+ L+++ +TAVD KTG+ + L+PK++PDF
Sbjct: 847 DVLGQVDNCHLALSDM--YTPFDPRCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDF 904
Query: 903 MEIEEYQ-TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH---YDTD---LEVPG 955
M+ ++ + Y+S ILG+++R V ++ +P D+ Y TD + P
Sbjct: 905 MDKDDVKVVYESKGILGKIFR----------IVQADAHFSPSDLEQMGYPTDPRIIRFPL 954
Query: 956 SVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRH---IWSMPKYNSRKQGELQERLKHS 1012
+ K SY+ L + +Y V E I + + R Q L E L+ +
Sbjct: 955 HESLLDRLKPLKASYERDLQYDMRRYRVYEPEIPSGIAIRNKRRKRVRDQN-LNEPLREA 1013
Query: 1013 YSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAW--YQVTYHREWVKKSLDLLEQGS 1070
Y+ R+ +K+ +DFE K L + A Y +TY V++ L +G
Sbjct: 1014 YNILVNNVRETAQKIVNDFEF----KTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGK 1069
Query: 1071 -------------ARSVVLLSFAWIANDYLARIKIKCQEMANI 1100
R L+SFAW CQE+ I
Sbjct: 1070 FGEKPEDDEDSERLRPKPLISFAWCF----------CQELIQI 1102
>gi|327295881|ref|XP_003232635.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
gi|326464946|gb|EGD90399.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
Length = 1207
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 223/809 (27%), Positives = 339/809 (41%), Gaps = 150/809 (18%)
Query: 389 VRRLVITPTKAYW---FLESK--------DVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
V R +TP Y + E+K D D F+RV F+DE P+
Sbjct: 418 VHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------PV 465
Query: 438 VKDITSN---SFSQK-TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--K 491
D +N F Q+ GV KR G + GR + FL FS + LR + WF +
Sbjct: 466 FFDPHANLEPIFHQRFAGVMKR-------GIEIAGRGFEFLGFSHSSLRAQTCWFAAPFT 518
Query: 492 VGETSVLDIKNWMGEFT----AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN 547
+ L+ + +G ++ +K AAR+G FS T ++ + V PD+KRN
Sbjct: 519 TADGDYLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRN 578
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLR 607
+FSDG+G ++ DL + L P+ +QIR AG KG+V+ + G + LR
Sbjct: 579 DRIFSDGVGVMSRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLR 637
Query: 608 GSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM 665
SM KF + ++EIC + R P +LN QII +L L V E F +Q + L
Sbjct: 638 ESMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEINFLYST 697
Query: 666 LVASDVAFEVLTASCAEQGNTAA----IMLSAGFKPQTEPHLQGML---TYELGELKECQ 718
+++ A + L S + ++ G + +P L+ ++ T + +
Sbjct: 698 FNSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTRDPFLKRVMELTTLLRLRDLKYR 757
Query: 719 CFIQVSES-SLENCFSKHG---------SRFAETKKLQV-INGFVVIAKNPCLRPGDVRI 767
I+V + +L + G E + ++ + VVI ++P L PGD+++
Sbjct: 758 ARIRVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREILVRDNVVITRSPALHPGDIQV 817
Query: 768 LEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+ AVD P L L +C+ F Q GDR + SG DLDGDLY + +D LIP +K+ P
Sbjct: 818 VNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLIP--RKTIP 875
Query: 825 PMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILL 871
P EAK L V ++ LG+I H AD+SE+G D+ C+ L
Sbjct: 876 PANYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGTLDQACLKL 935
Query: 872 AKLAATAVDSPKTG---KIVTMPSHLKPKKYPDFME--------------IEEYQT---- 910
A L + AVD K+G ++++P P+ PDFM I E ++
Sbjct: 936 AHLHSVAVDYSKSGIAVDVLSIPR--APRVRPDFMAQSPRFRVADSIESIIGEKKSTMQE 993
Query: 911 ----------------YKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDL--- 951
YKSN ILGRLYR I DE + D VD + +T++
Sbjct: 994 DDDEDEDDSDRRRIRYYKSNNILGRLYRSI----DERSFLCQLRDAGAVDTNTNTNVLRS 1049
Query: 952 -------EVPGSV--DFTADARNQKCSYDGQLNGLLGQYNVNR-----KEFRHIWSMPKY 997
EV G + T + + Y+ +L L+ +Y+ E+
Sbjct: 1050 IWNYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKSSISEYELFVGTILG 1109
Query: 998 NSRKQGELQERLKHSYSAFRKEFRQVFE---KMNSDFELSDNEKNVLYEQKASAWYQVTY 1054
+ KQ + R K + R E+ ++ E M D E E L A W +
Sbjct: 1110 HGHKQ---RRRDKDNAKEMRDEYNRLVEFTISMIRDTESGGTE--ALERSIACFWVAING 1164
Query: 1055 HREWVKKSLDLLEQGSARSVVLLSFAWIA 1083
K L A LLSF WIA
Sbjct: 1165 KSSGQKPG---LRSAHAHQEKLLSFPWIA 1190
>gi|405121923|gb|AFR96691.1| hypothetical protein CNAG_03466 [Cryptococcus neoformans var. grubii
H99]
Length = 1120
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 220/794 (27%), Positives = 345/794 (43%), Gaps = 143/794 (18%)
Query: 389 VRRLVITPTKAY----WFLESKDVADRF-------LRVTFMDEGLQTMNANVLSYYVAPI 437
+R +++TPT+ + S V R+ +RV F DE + A+ +
Sbjct: 370 IRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADYMKLV---- 425
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETS 496
+S + G+ RV+ L G + G + +A S++Q ++H+ WF + KV +
Sbjct: 426 ------DSINPAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMWFINNKVIDG- 478
Query: 497 VLDIKNWMGEFTAKNIAKYAARMGLCFSSTH-ATVEIPPTEVDHELPDIKRNGYVFSDGI 555
L+++NWMG +AK+AARMGL FS++ ++I + ELPDI+RNG F+DG
Sbjct: 479 -LELRNWMGTVHETVVAKHAARMGLPFSTSRIVNMKI---NIGEELPDIERNGRCFTDGC 534
Query: 556 GKITPDLAMEVAQIL--KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF 613
G ++ + A L K+ + PSA Q R G KGV++ W + LR SM KF
Sbjct: 535 GIAGREVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKF 594
Query: 614 KSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTV-----------------QA 656
+S L + ++Q FLNRQ I ++ V E+ + A
Sbjct: 595 RSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNA 654
Query: 657 SMASKLNLMLVASDVAFEVLTASCAEQG----NTAAIM---------LSAGFKPQTEPHL 703
+ L+ + +D L S + + AAI+ A K +L
Sbjct: 655 VTENDQQLIALCNDFPLAQLIRSGFNENPLLLDVAAIIECRALQDLKWRARVKLSDGVYL 714
Query: 704 QGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
G+ E G LKE + F Q E+ ++ V+N +V C
Sbjct: 715 IGIAD-ETGTLKEGEVFCQFQEND-------------DSPPKVVVNEVLVCRAPAC---- 756
Query: 764 DVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSC 823
DVR AVDRPEL HL + +VF +G R + G DLDGD Y + WD+ + S K
Sbjct: 757 DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFV-QSLKVY 815
Query: 824 PPMECT---PAEAKPLTC-HVN--------HQNLGQICNAHVVHADRSEYGAFDENCILL 871
PM+ P K +T H+N + LGQ+ N H+ +D Y FD C+ L
Sbjct: 816 DPMDYEAPDPISVKHVTQKHLNENFVQYVLNDVLGQVDNCHLALSDM--YTPFDPRCLHL 873
Query: 872 AKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYRQIKGAYDE 930
+++ +TAVD KTG+ + L+PK++PDFM+ ++ + Y+S ILG+++R
Sbjct: 874 SEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIFR-------- 925
Query: 931 NISVSSEVDINPVDIH---YDTDLEV---PGSVDFTADARNQKCSYDGQLNGLLGQYNVN 984
V ++ +P D+ Y TD + P + K SY+ L + +Y V
Sbjct: 926 --IVQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMRRYRVY 983
Query: 985 RKEFRH---IWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVL 1041
E I + + R Q L E L+ +Y+ R+ +K+ +DFE K L
Sbjct: 984 EPEIPSGIAIRNKRRKRVRDQN-LNEPLREAYNILVNNVRETAQKIVNDFEF----KTTL 1038
Query: 1042 YEQKASAW--YQVTYHREWVKKSLDLLEQGS-------------ARSVVLLSFAWIANDY 1086
+ A Y +TY V++ L +G R L+SFAW
Sbjct: 1039 TPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCF--- 1095
Query: 1087 LARIKIKCQEMANI 1100
CQE+ I
Sbjct: 1096 -------CQELVQI 1102
>gi|328855950|gb|EGG05073.1| hypothetical protein MELLADRAFT_64236 [Melampsora larici-populina
98AG31]
Length = 1240
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 207/694 (29%), Positives = 330/694 (47%), Gaps = 111/694 (15%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF---FSKVGETSVL--DIKNWMGEFT- 508
R L+ G NLCGR++ FL +SS+ LR+H AWF F K G++ V I+ +G+F+
Sbjct: 504 RYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYK-GDSLVTAASIRQRLGDFSK 562
Query: 509 AKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVA 567
NI A+Y AR+ F+ST ++ + P+++ + D++RNG F+DG+G I+PDLA +V
Sbjct: 563 VINIPARYMARVAQAFTSTRQSLTLLPSQI-VRIEDVERNGSCFTDGVGTISPDLARQVD 621
Query: 568 QILKLDGSPP--------PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT- 618
++L G P S +QIR G+KG+++ P + +R SM KF S +
Sbjct: 622 EVLSA-GLPSRKRRHHANSSCFQIRLGGFKGMLSVDPTLKQAC-VCVRPSMDKFVSPDSL 679
Query: 619 SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL- 676
+L+I S+TR P +LNR +I +L L + +++F +Q + SK+ A E++
Sbjct: 680 TLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLRRASELMD 739
Query: 677 TASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQV---SESSLENCFS 733
S A +I+ G E + Q E +L QCF + + L+ ++
Sbjct: 740 QLSMARTSGMPSILRQLGTLMGDESNTQSDFIEECYDLMIMQCFRDLKYRARIPLDASYT 799
Query: 734 KHGSRFAET---------------KKLQVINGFVVIAKNPCLRPGDVRILEAVDR----- 773
G + K + G + I+++PCL PGDVR++ + +
Sbjct: 800 LVGVADEDQVLPPNFVYACIQYPGKAPFYLEGPITISRSPCLHPGDVRVVTGIGKLDLER 859
Query: 774 -PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE 832
P L+ L +C+VF G R + G DLDGDLY + LIP + + PP T E
Sbjct: 860 APRLNALRNCVVFSVAGMRSLPSCLGGGDLDGDLYTLITLPELIPATARLHPPASYTAPE 919
Query: 833 AK----PLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAV 879
K P T +++ +G I + H+ AD+++ G D+ C+ L L + AV
Sbjct: 920 MKRLDRPCTIEDGAAFFLDYISSDLVGVIASRHLHIADQADQGTRDDLCLELVSLHSDAV 979
Query: 880 DSPKTGKIVTM------PSHLKPKKYPDFMEIEEYQT------YKSNKILGRLYRQIKGA 927
D PKTG V + P+ +K PDFM E ++ Y+S K+LG+L+RQI
Sbjct: 980 DYPKTGVPVAIDQLPRAPNRMK----PDFMCPEHHERREGDDYYESQKVLGKLFRQIP-- 1033
Query: 928 YDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYD-GQLNGLLGQYNVNRK 986
+ ++DI H+ T PG T A + + + GQL G L +V K
Sbjct: 1034 -------AEKIDI----FHHHTH---PGGPPVTTPATSGRTRRNKGQLFGKLDPTDVISK 1079
Query: 987 EFRHIWSMPKYNSRK-------QGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKN 1039
R +M + +RK G+ QE +K ++ +E Q+ K+N+ LS
Sbjct: 1080 AVRR--AMRRTLARKAEPDSTLMGQFQEVMK----SYAEELMQIC-KLNT---LSRKVDR 1129
Query: 1040 VLYEQKA--SAWYQVTYHREWVKKSLDLLEQGSA 1071
L E +A T R K +L+ LE +A
Sbjct: 1130 HLAETEAFLVVLTDTTSDRPLKKNTLERLETQTA 1163
>gi|367053924|ref|XP_003657340.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
gi|347004606|gb|AEO71004.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
Length = 1241
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 208/751 (27%), Positives = 335/751 (44%), Gaps = 147/751 (19%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPV-FDAYEK 362
+ F ++FL+ A++ G L+ +S L+ + A K + + PV DA+++
Sbjct: 328 LPFGLLFLLQALVANGYLHPATVSALARKLV------ALFAAAKPAWRSQPPVSVDAFKQ 381
Query: 363 LKDVQECLIKNPKLNEGPK--NIDDIAE----VRRLVI--TPTKAYWFLESKDVADRF-- 412
L Q P N P ++D I E RLV + T+A F ++ A F
Sbjct: 382 L--FQWIDYPTPPPNGDPNMFSVDGIMEYLQGAERLVREGSATRAAIFDDAPIRARIFRA 439
Query: 413 ----LRVTFMDEGLQTMNANVL------SYYVAPIV-----KDITSNSFSQKTGVFKRVK 457
R+T L+ MN VL SY++ +D+ N+ VF R K
Sbjct: 440 TVTPTRITLHGPELEPMN-RVLRKFSDHSYFIRAQFCDENGQDLFFNAKVSLDAVFDRFK 498
Query: 458 SILSDGFNLCGRRYSFLAFSSNQLRDHSAWF---FSKVGETSVLD-IKNWMGEFT-AKNI 512
S+L+DG + GR Y L FS + LR HSAW F G + D I +G+F ++
Sbjct: 499 SVLTDGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFIHEGRVQIPDLIITGLGDFNRIQSP 558
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVD-HELPDIKRNGYVFSDGIGKITPDLAMEVAQIL- 570
A+ AAR+G FS T V++ + E+PD++RNG VFSDG+G I+ A V ++
Sbjct: 559 ARRAARIGQAFSETPYAVDLDENMIQVLEVPDVERNGRVFSDGVGTISAGAADAVYNVIP 618
Query: 571 KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW-TRFQ 629
K G P+ +QIR+AG KG+++ P + +G ++ +R SM KF+S LEIC +R
Sbjct: 619 KSKGY--PTCFQIRWAGAKGMLSLDP-RLEGNKICIRPSMVKFESNDRQLEICDMASRPI 675
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI 689
P LN Q+I +L + D+ F +Q + + L A A NTA+
Sbjct: 676 PMVLNHQLIKILEDMGAPDKWFLELQ--------------NRELQRLRAVTATVCNTASF 721
Query: 690 MLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSL---ENCFSKHGSRFAETKKLQ 746
+ + + H + T +G F++ + ++ E KH +R K +
Sbjct: 722 VRAKKIGQSIQLHKLLLQTEAMGLDYWQDDFLRTAVEAIVLNELRLLKHKARIPVPKGIT 781
Query: 747 VIN-----------------------------GFVVIAKNPCLRPGDVRILEAVDRPELH 777
+ G V++A++P L PGD+++ P+ H
Sbjct: 782 LFGIMDETGFLDEGEVYVTYDAEDRYCQPPGPGPVIVARSPALHPGDIQVAYNRIPPDGH 841
Query: 778 HLC---DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI-------PPSKKSCPPME 827
L +CL+F GDR ++ SG DLDGD ++V WD ++ P P+E
Sbjct: 842 PLIQQRNCLIFSSWGDRDLPSQLSGGDLDGDQFHVIWDPQVVASVITFEPAKYDRVSPLE 901
Query: 828 C-TPAEAKPLTC----HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
P + + + +LG I H + AD+ E G D++C+ LA+L + AVD
Sbjct: 902 LDRPVVSADIAAFFVDFMRTDHLGVIATRHKILADQREGGTLDQDCVRLAELHSRAVDFS 961
Query: 883 KTGKIV---TMPSHLKPKKYPDFM--------------EIEEY----------------- 908
KTG+ V +P LK + PDF+ E+++Y
Sbjct: 962 KTGRAVERWELPQSLKWR--PDFLSRGPEIKIHDISAIELDQYAASRGDEDVDDVNDEGP 1019
Query: 909 --QTYKSNKILGRLYRQI--KGAYDENISVS 935
+ Y+S KILG+LYR + + + E+I ++
Sbjct: 1020 QHRYYRSEKILGKLYRAVDERKIWAEDIRMA 1050
>gi|58269288|ref|XP_571800.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58269290|ref|XP_571801.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58269292|ref|XP_571802.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|57228036|gb|AAW44493.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228037|gb|AAW44494.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228038|gb|AAW44495.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1120
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 229/824 (27%), Positives = 361/824 (43%), Gaps = 145/824 (17%)
Query: 361 EKLKDVQECLIKNPK-LNEGPKNID-DIAEVRRLVITPTKAY----WFLESKDVADRF-- 412
+K++D++ + K L P I + +R +++TPT+ + S V R+
Sbjct: 340 QKIRDIKHLIPKLAAFLRRRPPYIQPHLVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHD 399
Query: 413 -----LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
+RV F DE + ++A +K I +S + G+ RV+ L G +
Sbjct: 400 KLDGIIRVQFTDEEDR--------LFIADNMKLI--DSINPAVGIMARVRRALQFGLIIG 449
Query: 468 GRRYSFLAFSSNQLRDHSAWFFS-KVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSST 526
G + +A S++Q ++H+ WF + KV + L+++NWMG +AK+AARMGL FS++
Sbjct: 450 GETFYPVASSASQQKEHAMWFINNKVIDG--LELRNWMGTVHETVVAKHAARMGLPFSTS 507
Query: 527 H-ATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL--KLDGSPPPSAYQI 583
++I + ELPDI+RNG F+DG G ++ + A L K+ + PSA Q
Sbjct: 508 RIVNMKI---NIGEELPDIERNGRCFTDGCGIAGREVLNQAALALNEKVGINSQPSAIQF 564
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KGV++ W + + LR SM KFKS L + ++Q FLNRQ I ++
Sbjct: 565 RLGGAKGVLSDWSQLVNEYEIRLRPSMIKFKSDLADLNVIRIAKYQAAFLNRQFINIMCA 624
Query: 644 LNVSDEIFWTV-----------------QASMASKLNLMLVASDVAFEVLTASCAEQG-- 684
V E+ + A + L+ + +D L S +
Sbjct: 625 NGVPHELIIGIFEDAIADIKGFKDRVWNNAVTENDQQLIALCNDFPLAQLIKSGFNENPL 684
Query: 685 --NTAAIM---------LSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFS 733
+ AAI+ A K +L G + E G LKE + F Q E+
Sbjct: 685 LLDVAAIIECRALQDLKWRARVKLLDGVYLIG-IADETGTLKEGEVFCQFQEND------ 737
Query: 734 KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPH 793
E+ V+N +V C DVR AVD PEL HL + +VF +G R
Sbjct: 738 -------ESPPKIVVNEVLVCRAPAC----DVRRAWAVDNPELRHLKNVIVFSTQGMRDM 786
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT---PAEAKPLTC-HVN-------- 841
+ G DLDGD Y + WD+ + S K PM+ P K +T H+N
Sbjct: 787 PSMLGGGDLDGDDYTLIWDQRFV-QSLKVYDPMDYEAPDPISVKHVTQKHLNENFVQYIL 845
Query: 842 HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPD 901
+ LGQ+ N H+ +D Y FD C+ L+++ +TAVD KTG+ + L+PK++PD
Sbjct: 846 NDVLGQVDNCHLALSDM--YTPFDPRCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPD 903
Query: 902 FMEIEEYQ-TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH---YDTDLEV---P 954
FM+ ++ + Y+S ILG+++R V ++ +P D+ Y TD + P
Sbjct: 904 FMDKDDVKVVYESTGILGKIFR----------IVQADAHFSPSDLEQMGYPTDPRITRFP 953
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRH---IWSMPKYNSRKQGELQERLKH 1011
+ K SY+ L + +Y V E I + + R Q L E L+
Sbjct: 954 LHESLLDRLKPLKASYERDLQYDMRRYRVYEPEIPSGIAIRNKRRKRVRDQN-LNEPLRE 1012
Query: 1012 SYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAW--YQVTYHREWVKKSLDLLEQG 1069
+Y+ R+ +K+ +DFE K L + A Y +TY V++ L +G
Sbjct: 1013 AYNLLVNNVRETAQKIVNDFEF----KTTLTPMQVVARHCYALTYEEVHVRQWEQALAEG 1068
Query: 1070 S-------------ARSVVLLSFAWIANDYLARIKIKCQEMANI 1100
R L+SFAW CQE+ I
Sbjct: 1069 KFGEKPEDDEDSERLRPKPLISFAWCF----------CQELVQI 1102
>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2645
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 213/780 (27%), Positives = 343/780 (43%), Gaps = 146/780 (18%)
Query: 384 DDIAEVRRLVITPTKAYWFLES---------KDVADRFLRVTFMDEGLQTMNANVLSYYV 434
++ A ++ + ITPT+ + S + AD FL V F++E L
Sbjct: 1087 ENYALIKNVYITPTRTLFQKPSMYQLNRALRRYGADNFLLVHFVEENLD----------- 1135
Query: 435 APIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG-RRYSFLAFSSNQLRDHSAWFFSKVG 493
+ + + F K+ +++IL +G + G R+ ++ S++Q R S WF +
Sbjct: 1136 ----EKVEYSKFQTKS-----IENILLEGIMIEGIGRFHYIGNSASQARSSSCWFTNNRN 1186
Query: 494 ETSVLDIKNWMGEFTAK----NIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGY 549
+ I+N + + + N KY +GL FS T ++ IP + + L D++ +
Sbjct: 1187 DIDT--IRNQLVDLSINTGIANPRKYLRSLGLVFSGTTPSIIIPNNQYNENLDDVRNDEA 1244
Query: 550 VFSDGIGKITPDLAMEVAQILKLDGSPP--PSAYQIRYAGYKGVVACWPAKDDGIRMSLR 607
+F++GIG I +LA ++ + S P S+YQIR G KGVV+ + ++GI LR
Sbjct: 1245 IFTEGIGFIGKNLANKI----NAENSFPLGTSSYQIRIGGNKGVVSVHHSIENGIY--LR 1298
Query: 608 GSMKKFKSCHT----SLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
SMKKF + ++ +LEI S + LNRQII L L V D +F + KL
Sbjct: 1299 NSMKKFNTNNSEMNRTLEIISIASKKNCTLNRQIINLFGGLGVPDRLFLMLVMECLEKLA 1358
Query: 664 LMLVASDVAFEVLTA----SCAEQGNTAAI-------MLSAGFKPQTEPHLQ-------- 704
L+L S +A L + +E + +L +K Q +L
Sbjct: 1359 LILQDSSMARSELKNIDFFNQSEPTEKELLYDPLIRRILHTLYKKQLTKYLDFCFIPIKN 1418
Query: 705 -----GMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPC 759
G++ E G L+E Q F++++ A+ ++ VI V + KNPC
Sbjct: 1419 ARTLLGVID-ETGTLEENQVFVRIT---------------ADNNEIIVIQSNVAVVKNPC 1462
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP-- 817
L PGDV++ VD LHH+ D +VF QKG P ++ SGSDLDGD Y+V +D +++
Sbjct: 1463 LHPGDVQLAMGVDNQLLHHMLDVVVFSQKGTIPLFSKCSGSDLDGDRYFVCFDTDMVNTI 1522
Query: 818 ---------PSKKSCPPMECTPAEA-KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDEN 867
PSK E + + LGQI +H+ +D D+
Sbjct: 1523 VQHKDFCNLPSKSDSTVKEINKDTVIQQFIENTQKGRLGQIALSHLAISDYK--SPTDDL 1580
Query: 868 CILLAKLAATAVDSPKTGKIVTMPSHLKP-----KKYPDFMEIE---EYQTYKSNKILGR 919
I LA VD KT T+P ++YP FM+ + +S K+LG+
Sbjct: 1581 AIELAIEHFKEVDFVKTNIHGTVPEQALELTNYGRRYPMFMKASVGANKEFSESTKVLGK 1640
Query: 920 LYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLG 979
+Y Q +SV+ + D D + V G D+ DAR+Q +Y ++ L
Sbjct: 1641 IYNQCSSL----VSVAQYLP----DSRVDESILVSGYEDYVEDARHQFKNYKKEIRYLRS 1692
Query: 980 QYNVNRKEFRHIWSMPKYNSRKQGELQERL-KHSYSAF-------RKEFRQVFEKMNSDF 1031
+YN+ ++E I S NS + + + +Y+ F R F F+ S
Sbjct: 1693 KYNIEKEE--DIISSYMDNSMSGSSYSKNIVEDAYNQFSVLAVHYRDLFLLPFKSKESGG 1750
Query: 1032 ELSDNEKNVLYEQ----KASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYL 1087
+SD + + Y Q K SAWY V+Y + ++K +LSF WI Y+
Sbjct: 1751 GVSDEDIVIKYRQEIDKKVSAWYFVSYGDDKLEK--------------VLSFYWIVKRYI 1796
>gi|225554768|gb|EEH03063.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1240
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 179/596 (30%), Positives = 265/596 (44%), Gaps = 105/596 (17%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV F+DE + + Y + I + F K++L G N+ GR
Sbjct: 453 DHFLRVEFVDE-----TGDPVRYDPRASIDMIFESRF----------KTVLKSGINIAGR 497
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVL----DIKNWMGEFT-AKNIAKYAARMGLCFS 524
++ FL FS + LR + WF + + +L I +G F ++ AK AAR+G FS
Sbjct: 498 KFEFLGFSHSSLRSQTCWFVAPFYKDRILYNATTIIQNLGRFDHIQSPAKQAARIGQTFS 557
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
T ++ I + D++RNG VFSDG+G I+P + + + L P+ +QIR
Sbjct: 558 DTLTSIPISEKYISVG-KDVERNGRVFSDGVGTISPSVMYMIWKDHSLRTVVKPTVFQIR 616
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT----SLEIC-SWTRFQPGFLNRQIIT 639
AG KG+++ ++ G + LR SM KF H+ ++EIC S + P FLN Q+I
Sbjct: 617 LAGAKGMISL-DSRKKGKSLVLRPSMIKFHLPHSYNAFNIEICGSGLKPLPFFLNAQLIK 675
Query: 640 LLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA---------IM 690
+L L V D +F +QA S+L ++ A L E N A I+
Sbjct: 676 ILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFL-----EDTNIAKSVGLPWLINIL 730
Query: 691 LSAGFKPQTEPHLQGMLTYE-LGELKECQCFIQVSESSLENCFS--------KHGSRFAE 741
G + + L+ ++ L +L++ + ++ + F K G F
Sbjct: 731 EGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVFCT 790
Query: 742 T-----KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPH 793
+ + ++N VV+ ++P + PGDV+I AVD P L L +C+ F Q G R
Sbjct: 791 SLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDL 850
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHV 840
+ SG DLDGDLY V +D L+P K+ P E + K L +
Sbjct: 851 PSMLSGGDLDGDLYNVIFDNTLLP--KRIARPAEYPRVQEKVLGRAVVREDIIDFFVTFM 908
Query: 841 NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKY 899
LG+I H ADR G FD C+LLA+L +TAVD KTG V + K P
Sbjct: 909 QQDQLGRIATIHQALADRRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCR 968
Query: 900 PDF------MEIEE-------------------------YQTYKSNKILGRLYRQI 924
PDF + I E + YKS ILG+LYR I
Sbjct: 969 PDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSI 1024
>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
Length = 2341
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 224/815 (27%), Positives = 358/815 (43%), Gaps = 117/815 (14%)
Query: 331 FDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNP---KLNEGPKNIDDIA 387
F++L CQ +E + L+ + S + D + L D + + K+NE + A
Sbjct: 1122 FNIL-CQNKERGIFVLRSLISSNKKFIDFDKFLNDSLQFYSPDQYRHKINEKSTKSKEFA 1180
Query: 388 EVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFS 447
V+ + +TP++ + + +R LR F E + V + + P+ +
Sbjct: 1181 FVKEVFVTPSRIIFKEPKLERTNRALR-RFGSENFILLK--VANESLEPL------RGLN 1231
Query: 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNW-MGE 506
K ++ ++ G L G +Y ++ S++Q D SAWF + + V I+NW +
Sbjct: 1232 PKHPLYTTIQKYFDSGIELSGTKYYYVGNSNSQHSDFSAWFVNDLAH--VFLIRNWSQDQ 1289
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
K+A + L F++T + IP + + DI NG+ F++G G I DL+ +
Sbjct: 1290 SLVMQPRKFARGLSLMFTTTSPSFVIPQRNY-YIIDDIISNGHNFTEGCGFIGKDLSRRI 1348
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD-DGIRMSLRGSMKKFKSCH----TSLE 621
++ S AYQIR G KG++ D DG+ +R S K K H +LE
Sbjct: 1349 NELFHYKSST--CAYQIRIGGAKGMLVVSETVDPDGVY--IRKSQIKTKPAHYDEHRTLE 1404
Query: 622 ICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQAS----MASKLNLMLVASDVA---FE 674
ICS + LNRQ+I LLS V D +F+++Q +AS LN + + V F+
Sbjct: 1405 ICSISTSSNCKLNRQVIALLSCKGVKDHVFYSIQDRYMNYLASTLNDVEYSRKVLDEFFK 1464
Query: 675 VLTASCAEQGNTAAIMLSAGFK-----PQTEPHLQGMLTYEL------GELKECQC-FIQ 722
L + Q N +L +K Q + HL + L L C FIQ
Sbjct: 1465 DLNDNELLQDNFIRRILITHYKLSIERAQQKSHLDIEKSRNLLGVTDPTRLLPADCIFIQ 1524
Query: 723 VSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDC 782
+ + + GSR K G VV+ KNPC PGD+RIL AV+ LHHL D
Sbjct: 1525 IEQEE------EDGSRHYVPLK-----GDVVVTKNPCTHPGDLRILRAVNIEALHHLKDV 1573
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP------- 835
+VF G+ P+ E SGSDLDGD Y+V +D +L+ + S P + + P
Sbjct: 1574 IVFSTYGNVPNFKEISGSDLDGDRYFVCFDNDLM-INGNSIPYLGDNLTKEDPPQNVYND 1632
Query: 836 -------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV 888
+V Q +G + NAH+ +D YGA + I L+ +D+ KTG
Sbjct: 1633 PKLLVGQYLANVEKQKIGTLYNAHLAISDY--YGADSVHAIELSIECFKEIDAVKTGVHG 1690
Query: 889 TMPS----HLKPKKYPDFMEIEE---YQTYKSNKILGRLYRQIK-----GAYDENISVSS 936
+P HL YP +M ++ + Y+S K+ G ++ Q++ G + ISV+
Sbjct: 1691 EVPRNIQFHLNHFGYPHYMRRDDNSPKKYYQSKKVQGLMFDQLEQLVYIGDFLPEISVNE 1750
Query: 937 EVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPK 996
+ N D G D+ A Y ++N LL +Y +E + M +
Sbjct: 1751 K---NLKD----------GYNDYLNSASILYQEYKNKINSLLQRYGGEDEESLLVGFMDQ 1797
Query: 997 -YNSRKQGELQERLKHSYSA----FRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQ 1051
++S +Q+ +K +Y A F+ EF + F D ++ NE E+K SAWY
Sbjct: 1798 NFSSDYSKNIQDDIKENYRAIIDSFKVEFLKDFGSGIIDEQVIKNEHYGEVEKKISAWYY 1857
Query: 1052 VTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
V+Y ++ R+ L F WIA +
Sbjct: 1858 VSYS-----------DKNEDRA---LGFYWIARQF 1878
>gi|403164222|ref|XP_003324286.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375164936|gb|EFP79867.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1282
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 188/650 (28%), Positives = 296/650 (45%), Gaps = 120/650 (18%)
Query: 353 KRPVFDAYEKLKDVQEC----LIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV 408
K+ +FD E+L +V +C + + EGP P ++ L D
Sbjct: 458 KKNLFDRQERLDNVFKCRSVTITPTTLILEGP--------------LPEESNSILRLYDY 503
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
F+RV DE + + +++ +F ++ R + L DG + G
Sbjct: 504 NSAFIRVAIRDEDGSNYHHD----------REVDGRTFLKQ-----RYRPFLVDGLYVAG 548
Query: 469 RRYSFLAFSSNQLRDHSAWFF----SKVGETSVLDIKNWMGEFTAKNI--AKYAARMGLC 522
RR+ FL +SS+ L+ H AWF K S I++ MG F+ N A+Y AR+
Sbjct: 549 RRFMFLGYSSSALKCHQAWFVCPFVHKGAVMSAEKIRSRMGTFSLVNRIPARYMARIAQA 608
Query: 523 FSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ-------ILKLDGS 575
F++T V + P+++ ++PD++RNG VF+DG+G I+P LA +V Q +LK +
Sbjct: 609 FTTTQKAVTLAPSQL-RKIPDVQRNGSVFTDGVGTISPSLARQVEQALLGTMMVLKRRNA 667
Query: 576 PPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEIC-SWTRFQPGFLN 634
S YQIR GYKG+++ P I + LR SM KF + +L+I S+ R P FLN
Sbjct: 668 INSSCYQIRLGGYKGMLSIDPTLAGEI-VGLRPSMSKFDADSYTLDIASSFRRPLPSFLN 726
Query: 635 RQIITLLSTLNVSDEIFWTVQ-----------------ASMASKLNL------------- 664
R +I +L L + +F T Q A + K L
Sbjct: 727 RPLIKILEDLKIPSHVFMTAQQKTVRSIERSRESFRQSAKLMEKAGLGFSSSFPKILKRF 786
Query: 665 -MLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQV 723
L+ +D EV + + + A I K + L+G T +G E C +
Sbjct: 787 SSLMRTDNPDEVRSTFIDDCLDLAVIECLRDLKYRARIPLEGSYTL-VGVADEEFC---L 842
Query: 724 SESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRP-----ELHH 778
E + C + G K + ++G + I+++P + PGDV+++ A+ RP +L
Sbjct: 843 QEGQIYACVQEKG------KPRKYLSGKIAISRSPSIHPGDVQVVHAIGRPPPGSEKLGA 896
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE----AK 834
L +C+VF G R + G DLDGDLY + D +IP K C P +P + +
Sbjct: 897 LVNCVVFSVIGKRSLPSCLGGGDLDGDLYSLITDPQMIPFQKDICSPGSYSPIQPILLPQ 956
Query: 835 PLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
P T +++ +G I H+ AD+ G +C+ LA+L + AVD PKTG
Sbjct: 957 PCTILDGIEFFLDYISSDLVGIIATRHLQIADQQTLGTLHPDCLKLAELHSKAVDYPKTG 1016
Query: 886 KIVTMPSHLKPKKY-PDFMEIEEY----------QTYKSNKILGRLYRQI 924
V++ K + PDFM EY + Y+S+K+LGRL+R I
Sbjct: 1017 VPVSIQDLPKVESAKPDFM-CPEYMLNVHKKGNERYYESDKVLGRLFRAI 1065
>gi|258569467|ref|XP_002543537.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903807|gb|EEP78208.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1004
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 180/636 (28%), Positives = 292/636 (45%), Gaps = 103/636 (16%)
Query: 340 EVIVTAL-KHIYSYKRPVFDAYEKLKDVQEC-------LIKNPKLNEGPKNID--DIAEV 389
E++ L K I S + P D +E+ D+ + + NE +N+ + +V
Sbjct: 372 EIVAEGLNKMISSLEYPSPDTHERDVDINALEELLLEKIERVLSQNEASRNLTHPNNVKV 431
Query: 390 RRLVITPTKAYWF---LESKDVADR--------FLRVTFMDEGLQTMNANVLSYYVAPIV 438
R +TP+ Y + +E+K+ R FLRV F+DE + + + Y +
Sbjct: 432 NRTQVTPSGIYLYGPNIETKNRVLRQYDNHINHFLRVEFVDE-----HGDRVYYDPQASL 486
Query: 439 KDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF----FSKVGE 494
++I ++R K +L +G + GRR+SFL FS + LR + WF + GE
Sbjct: 487 EEI----------FYQRFKGVLKNGIQIGGRRFSFLGFSHSSLRSQTCWFVAPFITNTGE 536
Query: 495 T-SVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFS 552
V I +G F + +K AAR+G FS T ++++IP V + PDIKRNG VFS
Sbjct: 537 RFDVESIIQGLGSFDHIYSPSKLAARIGQTFSETQSSIKIPEDAVYFDEPDIKRNGRVFS 596
Query: 553 DGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAG--YKGVVACWPAKD----------- 599
DG+G ++P + ++ + L P+ +QIR+AG C+P +
Sbjct: 597 DGVGTMSPSIMYKIWKEYALRERVKPTIFQIRFAGNSLPSTFPCYPTANTVFCIILGAKG 656
Query: 600 --------DGIRMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDE 649
G ++ LR SM KFK+ ++EIC S TR P +LN Q+I +L L V
Sbjct: 657 MVSLDSRLKGDQLKLRESMIKFKAKGAFNIEICGSGTRALPFYLNAQLIKVLEDLGVRPS 716
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN----TAAIMLSAGFKPQTEPHLQG 705
F +Q +L + + A + L + QG ++ +P L+
Sbjct: 717 AFIDLQTDEIDRLRSVEKSVIKAGQFLEQTNIAQGVRLPWLIQVIRGLELHHDQDPFLRS 776
Query: 706 MLT----YELGELKECQCFIQVSESSL------ENCFSKHGSRFAE-----TKKLQVING 750
++ ++ +LK + I+V + E+ + K G F + ++
Sbjct: 777 VIQLAVFLKMRDLK-YRARIRVPNAVTLYGIMDESGYLKEGEIFCTFLTEGGVREILVRD 835
Query: 751 FVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
+++ ++P L PGDV+ AVD P L L +C+VF Q G R + SG DLDGDLY
Sbjct: 836 RIIVTRSPALHPGDVQFANAVDVPATSPLRKLHNCVVFSQHGQRDLPSMLSGGDLDGDLY 895
Query: 808 YVTWDENLIPPSKKSCPPMECTPAEAKPLTCHV-------------NHQNLGQICNAHVV 854
+ +DE L+P +++ P + E K L V LG+I H
Sbjct: 896 NIIYDERLMP--RRTIEPADYPRVEEKLLNRRVVRDDIIDFFVTFMEQDQLGRIATIHQA 953
Query: 855 HADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
AD+ G D++C+LLA+L +TAVD K+G V++
Sbjct: 954 LADQKIEGTLDQDCLLLAELHSTAVDFSKSGIPVSV 989
>gi|209978362|gb|ACJ04634.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 218/794 (27%), Positives = 344/794 (43%), Gaps = 143/794 (18%)
Query: 389 VRRLVITPTKAY----WFLESKDVADRF-------LRVTFMDEGLQTMNANVLSYYVAPI 437
+R +++TPT+ + S V R+ +RV F DE + A+ +
Sbjct: 370 IRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADYMKLV---- 425
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETS 496
+S + G+ RV+ L G + G + +A S++Q ++H+ WF + KV +
Sbjct: 426 ------DSINPAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMWFINNKVIDG- 478
Query: 497 VLDIKNWMGEFTAKNIAKYAARMGLCFSSTH-ATVEIPPTEVDHELPDIKRNGYVFSDGI 555
L+++NWMG +AK+AARMGL FS++ ++I + ELPDI+RNG F+DG
Sbjct: 479 -LELRNWMGTVHETVVAKHAARMGLPFSTSRIVNMKI---NIGEELPDIERNGRCFTDGC 534
Query: 556 GKITPDLAMEVAQIL--KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF 613
G ++ + A L K+ + PSA Q R G KGV++ W + LR SM KF
Sbjct: 535 GIAGREVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKF 594
Query: 614 KSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTV-----------------QA 656
+S L + ++Q FLNRQ I ++ V E+ + A
Sbjct: 595 RSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNA 654
Query: 657 SMASKLNLMLVASDVAFEVLTASCAEQG----NTAAIM---------LSAGFKPQTEPHL 703
+ L+ + +D L S + + AAI+ A K +L
Sbjct: 655 VTENDQQLIALCNDFPLAQLIRSGFNENPLLLDVAAIIECRALQDLKWRARVKLSDGVYL 714
Query: 704 QGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
G+ E G LKE + F Q E+ ++ V+N +V C
Sbjct: 715 IGIAD-ETGTLKEGEVFCQFQEND-------------DSPPKVVVNEVLVCRAPAC---- 756
Query: 764 DVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSC 823
DVR AVDRPEL HL + +VF +G R + G DLDGD Y + WD+ + S K
Sbjct: 757 DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFV-QSLKVY 815
Query: 824 PPMECT---PAEAKPLTC-HVN--------HQNLGQICNAHVVHADRSEYGAFDENCILL 871
PM+ P K +T H+N + LGQ+ N H+ +D Y FD C+ L
Sbjct: 816 DPMDYEAPDPISVKHVTQKHLNENFVQYVLNDVLGQVDNCHLALSDM--YTPFDPRCLHL 873
Query: 872 AKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYRQIKGAYDE 930
+++ + +VD KTG+ + L+PK++PDFM+ ++ + Y+S ILG+++R
Sbjct: 874 SEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIFR-------- 925
Query: 931 NISVSSEVDINPVDIH---YDTDLEV---PGSVDFTADARNQKCSYDGQLNGLLGQYNVN 984
V ++ +P D+ Y TD + P + K SY+ L + +Y V
Sbjct: 926 --IVQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMRRYRVY 983
Query: 985 RKEFRH---IWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVL 1041
E I + + R Q L E L+ +Y+ R+ +K+ +DFE K L
Sbjct: 984 EPEIPSGIAIRNKRRKRVRDQN-LNEPLREAYNILVNNVRETAQKIVNDFEF----KTTL 1038
Query: 1042 YEQKASAW--YQVTYHREWVKKSLDLLEQGS-------------ARSVVLLSFAWIANDY 1086
+ A Y +TY V++ L +G R L+SFAW
Sbjct: 1039 TPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCF--- 1095
Query: 1087 LARIKIKCQEMANI 1100
CQE+ I
Sbjct: 1096 -------CQELVQI 1102
>gi|210148496|gb|ACJ09171.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 218/794 (27%), Positives = 344/794 (43%), Gaps = 143/794 (18%)
Query: 389 VRRLVITPTKAY----WFLESKDVADRF-------LRVTFMDEGLQTMNANVLSYYVAPI 437
+R +++TPT+ + S V R+ +RV F DE + A+ +
Sbjct: 370 IRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADYMKLV---- 425
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGETS 496
+S + G+ RV+ L G + G + +A S++Q ++H+ WF + KV +
Sbjct: 426 ------DSINPAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMWFINNKVIDG- 478
Query: 497 VLDIKNWMGEFTAKNIAKYAARMGLCFSSTH-ATVEIPPTEVDHELPDIKRNGYVFSDGI 555
L+++NWMG +AK+AARMGL FS++ ++I + ELPDI+RNG F+DG
Sbjct: 479 -LELRNWMGTVHETVVAKHAARMGLPFSTSRIVNMKI---NIGEELPDIERNGRCFTDGC 534
Query: 556 GKITPDLAMEVAQIL--KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF 613
G ++ + A L K+ + PSA Q R G KGV++ W + LR SM KF
Sbjct: 535 GIAGREVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKF 594
Query: 614 KSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTV-----------------QA 656
+S L + ++Q FLNRQ I ++ V E+ + A
Sbjct: 595 RSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNA 654
Query: 657 SMASKLNLMLVASDVAFEVLTASCAEQG----NTAAIM---------LSAGFKPQTEPHL 703
+ L+ + +D L S + + AAI+ A K +L
Sbjct: 655 VTENDQQLIALCNDFPLAQLIRSGFNENPLLLDVAAIIECRALQDLKWRARVKLSDGVYL 714
Query: 704 QGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
G+ E G LKE + F Q E+ ++ V+N +V C
Sbjct: 715 IGIAD-ETGTLKEGEVFCQFQEND-------------DSPPKVVVNEVLVCRAPAC---- 756
Query: 764 DVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSC 823
DVR AVDRPEL HL + +VF +G R + G DLDGD Y + WD+ + S K
Sbjct: 757 DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFV-QSLKVY 815
Query: 824 PPMECT---PAEAKPLTC-HVN--------HQNLGQICNAHVVHADRSEYGAFDENCILL 871
PM+ P K +T H+N + LGQ+ N H+ +D Y FD C+ L
Sbjct: 816 DPMDYEAPDPISVKHVTQKHLNENFVQYVLNDVLGQVDNCHLALSDM--YTPFDPRCLHL 873
Query: 872 AKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ-TYKSNKILGRLYRQIKGAYDE 930
+++ + +VD KTG+ + L+PK++PDFM+ ++ + Y+S ILG+++R
Sbjct: 874 SEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIFR-------- 925
Query: 931 NISVSSEVDINPVDIH---YDTDLEV---PGSVDFTADARNQKCSYDGQLNGLLGQYNVN 984
V ++ +P D+ Y TD + P + K SY+ L + +Y V
Sbjct: 926 --IVQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMRRYRVY 983
Query: 985 RKEFRH---IWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVL 1041
E I + + R Q L E L+ +Y+ R+ +K+ +DFE K L
Sbjct: 984 EPEIPSGIAIRNKRRKRVRDQN-LNEPLREAYNILVNNVRETAQKIVNDFEF----KTTL 1038
Query: 1042 YEQKASAW--YQVTYHREWVKKSLDLLEQGS-------------ARSVVLLSFAWIANDY 1086
+ A Y +TY V++ L +G R L+SFAW
Sbjct: 1039 TPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCF--- 1095
Query: 1087 LARIKIKCQEMANI 1100
CQE+ I
Sbjct: 1096 -------CQELVQI 1102
>gi|407917163|gb|EKG10484.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1221
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 179/639 (28%), Positives = 285/639 (44%), Gaps = 126/639 (19%)
Query: 386 IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYV 434
IA + R++ITP Y +V++R FLRV F+DE + + Y
Sbjct: 426 IALIHRVIITPAGTYLEGPEPEVSNRVLRKYPEHTDNFLRVQFVDE-----EGDAIRYEP 480
Query: 435 APIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS---- 490
+ +I N F KS+L N+ G ++FL FS + LR + WF +
Sbjct: 481 KTSLGEIFHNRF----------KSVLDGEINIGGHSFAFLGFSHSSLRSQTCWFMAPFVQ 530
Query: 491 KVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN-G 548
K+ + ++ +G+F+ ++ AK AAR+G FS T TV + E+ + D++ + G
Sbjct: 531 KLSLIAAQEVIKGLGDFSKIRSPAKCAARIGQAFSDTSGTVTVN-EEIIKMIDDVRNDRG 589
Query: 549 YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD---GIRMS 605
++FSDG+GKI+ L V + + P+ QIR+ G KGVV+ DD G ++
Sbjct: 590 HIFSDGVGKISYKLLKRVWKEYQQARGQRPTCLQIRFGGAKGVVSL----DDRLPGEQLV 645
Query: 606 LRGSMKKFKSCHT-SLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
LR SM KF T ++EIC R P +LNRQ I +L L V ++F +Q++M +L
Sbjct: 646 LRPSMVKFYGAGTWNIEICGANFRPLPMYLNRQFIKILEDLGVPAQVFLDLQSAMVEQLR 705
Query: 664 LMLVASDVAFEVLTASCAEQGNTAAIMLSA----GFKPQTEPHLQGMLTYELGELKECQC 719
+ + A L + Q +L GF + L ++ E+ L + +
Sbjct: 706 RITKSPVNAATFLEHARVGQATRMPHLLRMLDELGFSFNEDEFLSHVV--EIAALSQLRD 763
Query: 720 FIQVSESSLENCFSKHG-----------------SRFAET---KKLQVINGFVVIAKNPC 759
S ++ + +G R + K+ + G V++ ++P
Sbjct: 764 IKHRSRIQVDRGVTLYGIMDETGFLGEDEIYCVIERIGDNGRPKRTVLSGGEVIVTRSPA 823
Query: 760 LRPGDVRILEAVDRP---ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
+ PGDV+ AVD P L L + +VF KG R ++ SG DLDGDLY V +D L+
Sbjct: 824 MHPGDVQKARAVDVPPDSPLQALSNVVVFSSKGQRDLPSQLSGGDLDGDLYNVIFDRRLM 883
Query: 817 P-----PSK-KSCPPMECTPAEAKPLTCH---------VNHQNLGQICNAHVVHADRSEY 861
P P+ K PP++ +P+T + LG+I N H+ ADR
Sbjct: 884 PRVTYQPADYKKVPPLDI----GRPVTRQDITDFFVKFMETDQLGRISNIHMQLADRRPN 939
Query: 862 GAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM----------------- 903
G D +C+ LA++A+ AVD KTG V M + PDFM
Sbjct: 940 GTLDPDCLKLAEMASIAVDFSKTGIPVDMSQCPRVDMIRPDFMANGPRVIVEKKGAVFQD 999
Query: 904 ------------------EIEEYQTYKSNKILGRLYRQI 924
+ + ++ Y+S ++LG+LYR I
Sbjct: 1000 EDEDDLLDDDDAVGALDPDFKTFRYYESERVLGQLYRAI 1038
>gi|341880675|gb|EGT36610.1| hypothetical protein CAEBREN_29614 [Caenorhabditis brenneri]
Length = 1669
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 216/872 (24%), Positives = 367/872 (42%), Gaps = 206/872 (23%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + +R LR +TF D+ Q M N S
Sbjct: 506 VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTS------ 559
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS- 496
T + K V + L G + GR + +L S++Q+RD+ A+F K +
Sbjct: 560 ------------TLLEKTVNNYLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 607
Query: 497 ------------------VLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHAT---VEIPP 534
+ + +G F T NI K AR+G CF+ + + ++
Sbjct: 608 REYEAIHHVKPPITYNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCT 667
Query: 535 TEVDHELP---DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR------- 584
++L +IKR+ Y FSDG+G ++ A V+Q++ G PS +Q+
Sbjct: 668 YMTMYDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDF-GKGVPSCFQVFLNPIAPK 726
Query: 585 ---YAGYKGVVACWPAK-------DD---GIRMSLRGSMKKF---KSCHTSLEICSWTRF 628
++ ++ W + DD G+ R S KF + +EI ++
Sbjct: 727 TPIFSPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSP 786
Query: 629 QPGFLNRQIITLLSTLN--VSDEIFWTVQASMASKLN--LMLVASDVAFEVLTAS----C 680
P LN+ I +L ++ S E V + L+ ++L A + E +
Sbjct: 787 VPVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETFCRNRLKEL 846
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLTY------------------------------E 710
+ + + + GF +EP + ++ E
Sbjct: 847 PRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGRSMLGVVDE 906
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
G L+ Q F+Q +++ K+ +R QV+ G V++ KNPC+ GDVRI EA
Sbjct: 907 TGRLQYGQIFVQYTKNLALKLPPKNAAR-------QVLTGTVLLTKNPCIVAGDVRIFEA 959
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP 830
VD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y + WD+ L+ K+ P + T
Sbjct: 960 VDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDPFDFTS 1017
Query: 831 AEAKP--------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAA 876
+ K ++ ++G I N+H+ ++D +YG C+ LAK
Sbjct: 1018 EKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSD--QYGLNARVCMDLAKKNC 1075
Query: 877 TAVDSPKTGKIVTMPSHLKPK-----------------KYPDF-MEIEEYQTYKSNKILG 918
AVD K+G+ P L+ K + PD+ M + Y S ++ G
Sbjct: 1076 QAVDFTKSGQ---PPDELERKWRKDEETGEMIPPERCERVPDYHMGNDHTPMYVSPRLCG 1132
Query: 919 RLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQ----- 973
+L+R+ K A D+ + +S E D V+I D ++ + G + AR++ Y+ Q
Sbjct: 1133 KLFREFK-AIDDVLKISEERD-EQVEISIDENIMMEGYESYMHSARDELSRYNAQLRVSF 1190
Query: 974 LNGLLGQYNV---------------NRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRK 1018
L+ ++ Y + NR + M YN+ + ++ ++ + + +R+
Sbjct: 1191 LDSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQM--IETKVTNLFKKYRE 1248
Query: 1019 EFRQVFE-KMNSDFELSD---NEKNVLYEQ----------KASAWYQVTYH----REWVK 1060
F + FE ++ E S ++ N+L Q KA AWY+ Y ++ +
Sbjct: 1249 HFFEEFEGGWEANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYRACYGTKNPQKCIH 1308
Query: 1061 KSLDLLEQGS-ARSVVLLSFAWIANDYLARIK 1091
+ LE+ R LSFAWIA D +A +K
Sbjct: 1309 NLIKFLEEARITRENKKLSFAWIAFDVIAMVK 1340
>gi|189200837|ref|XP_001936755.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983854|gb|EDU49342.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 953
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 216/761 (28%), Positives = 329/761 (43%), Gaps = 182/761 (23%)
Query: 302 EGVSFEIMFLVNAVMHKGI---LNQHQLSDSFFDLLRCQPREVIVTALKHI---YSYKRP 355
+ SF + + V A+M +G LN +L + L + ++ A++ + P
Sbjct: 30 QAFSFAVRYQVTALMLEGTITPLNIIKLLPYVYHLAKQHGSDLTANAVRQLGQQIPTPSP 89
Query: 356 VFDA----YEKL-KDVQECLIKNPK-------LNEGPKNIDDIAEVRRLVITPTKAYWFL 403
DA +KL +++E +++N K LN K +A + +TPT
Sbjct: 90 QEDAKSFTTQKLAHNLRETILENEKRELIARELNVKQKKHHHLALTYKATVTPTGILLRG 149
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
DV++R F+RV F DE + LS + P + + V
Sbjct: 150 PDWDVSNRILRKYGTRTEYFMRVFFADE-------DGLSVFHDP---------RASQGNV 193
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL----DIKNWMGEFT 508
++R +S+L G + GR Y FL FS LR H AWF + + DI + +G+F+
Sbjct: 194 YERFRSVLQHGIFVAGRTYQFLGFSHASLRSHQAWFMAPFEMNGTMFRARDIISDLGDFS 253
Query: 509 AKNI-AKYAARMGLCFSSTHATVEIPPTE-VDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
+ A+ +AR+G FS T +V +P T V DI RNG FSDG G I+ ++ +V
Sbjct: 254 HIHCSARCSARIGQAFSDTIFSVPVPSTAYVTETKADIARNGRTFSDGCGTISLEILRKV 313
Query: 567 AQILKLDGSPP------PSAYQIRYAGYKGVVACWPAKDD---GIRMSLRGSMKKF--KS 615
L PP P+ QIR+ G KGV++ D+ G ++ +R SM K+ K
Sbjct: 314 WNTL-----PPERKAQRPTILQIRFRGAKGVLSL----DESLVGEQLHIRQSMTKYIAKE 364
Query: 616 CHTSLEICSWTRFQP--GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML------- 666
LE+C ++P FLN Q I +L L V F VQ + L ++
Sbjct: 365 TWRDLELCG-AAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAA 423
Query: 667 ---------VASDVA--FEVL---------------TASCAEQGNTAAIMLSAGFKPQTE 700
V + V FE++ A N ++ A P +
Sbjct: 424 SFLEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARI-PIEQ 482
Query: 701 PHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCL 760
HL + E L+E Q +I + + K G + ++ ++ +VI + P L
Sbjct: 483 GHLLYGIMDETNFLQEGQVYIATQD------YDKSG----KLRRRILVGERIVITRAPAL 532
Query: 761 RPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
PGDV+++ AVD PE L L +C+VF Q+G R ++ SG DLDGDL+++ +D+ LIP
Sbjct: 533 HPGDVQLVTAVDVPEHSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLIP 592
Query: 818 PSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAF 864
+ PP + AK L ++N LGQI N H + AD+S G
Sbjct: 593 --DFTMPPADYKSNGAKDLGRPVEVNDIVDFFIEYMNMDRLGQISNKHKIRADKST-GTN 649
Query: 865 DENCILLAKLAATAVDSPKTG------KIVTMPSHLKPKKYPDFM--------------E 904
D C+LLA+LA+ AVD K+G KI H++ PDFM E
Sbjct: 650 DPECLLLAQLASDAVDFSKSGISADISKIPRGFDHIR----PDFMAPGTNLVVNELGAAE 705
Query: 905 IEEYQT---------------------YKSNKILGRLYRQI 924
+EE + YKS+KILG LYR I
Sbjct: 706 LEELEPDDIDDPDGVSVLDADKARSRYYKSDKILGILYRDI 746
>gi|225678504|gb|EEH16788.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1262
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 194/648 (29%), Positives = 284/648 (43%), Gaps = 133/648 (20%)
Query: 389 VRRLVITPTKAYWF---LESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+ R +TP Y + LE+K+ D FLRV F+DE + + + Y
Sbjct: 418 IHRAQVTPCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDE-----SGDPIRY----- 467
Query: 438 VKDITSNSFSQKTGVFK-RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV--GE 494
+S + +F+ R K +L +G + GR++ FL FS + LR + WF + G
Sbjct: 468 ------DSRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGG 521
Query: 495 T---SVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV 550
T + + I+N +G F + AK AAR+G FS T ++ I ++ D++RNG V
Sbjct: 522 TLYNATVIIQN-LGRFDHIHSPAKQAARIGQTFSDTLTSIPIS-FDMLSVGEDVERNGRV 579
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA-----------------------G 587
FSDG+G I+P L E+ + L P+ +QIR A G
Sbjct: 580 FSDGVGTISPSLMYEIWKDHSLRAKVKPTVFQIRVAAPEPLLAGFHAYRGILLTETWFIG 639
Query: 588 YKGVVACWPAKDDGIRMSLRGSMKKFKSCHT----SLEIC-SWTRFQPGFLNRQIITLLS 642
KG++A K G + LR SM KF T ++E+C S + P FLN Q+I +L
Sbjct: 640 AKGMIALDSTKT-GKSLMLRKSMVKFPVPETVGGLNIELCGSGLKALPFFLNAQLIKILE 698
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL--TASCAEQGNTAAIMLSAGFK---P 697
L V F +QA +L ++ A L T G I + GF+
Sbjct: 699 DLGVEQSAFLKLQADEIERLRATAPSTAQAARFLEDTHIAKSIGLPWLISILEGFRLSHT 758
Query: 698 QTEPHLQGMLTYELGELKECQCFIQVSESSLENCFS--------KHGSRFAET-----KK 744
E + M L +L++ + ++ + F K G F T +
Sbjct: 759 NDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEIFCVTLSEDGHR 818
Query: 745 LQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSD 801
++ VV+ ++P + PGDV++ AVD P L L +C+ F Q GDR + SG D
Sbjct: 819 EVLVRPRVVVTRSPAMHPGDVQVARAVDVPADSPLRQLHNCIAFSQYGDRDLPSMLSGGD 878
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQI 848
LDGDLY V +DE LIP K + PP E E K L + LG+I
Sbjct: 879 LDGDLYNVIYDETLIP--KITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQDQLGRI 936
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDF----- 902
H AD+ + G FDE C+LLA+L +TAVD K+G V + K P+ PDF
Sbjct: 937 ATIHQAIADQRDRGTFDEQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAHGP 996
Query: 903 ---------MEIEEYQT-----------------YKSNKILGRLYRQI 924
+ E+ +T YKS KILG+LYR I
Sbjct: 997 RVRIAESLSLHEEDEETTVHDLDDEDDERPPTRFYKSYKILGKLYRSI 1044
>gi|240276859|gb|EER40370.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 1240
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 178/596 (29%), Positives = 265/596 (44%), Gaps = 105/596 (17%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV F+DE + + Y + I + F K++L G N+ GR
Sbjct: 453 DHFLRVEFVDE-----TGDPVRYDPRASIDMIFESRF----------KTVLKSGINIAGR 497
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVL----DIKNWMGEFT-AKNIAKYAARMGLCFS 524
++ FL FS + LR + WF + + +L I +G F ++ AK AAR+G FS
Sbjct: 498 KFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHIQSPAKQAARIGQTFS 557
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
T ++ I + D++RNG VFSDG+G I+P + + + L P+ +QIR
Sbjct: 558 DTLTSIPISDKYISIG-KDVERNGRVFSDGVGTISPSVMYMIWKDHSLRTVVKPTVFQIR 616
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT----SLEIC-SWTRFQPGFLNRQIIT 639
AG KG+++ ++ G + LR SM KF ++ ++EIC S + P FLN Q+I
Sbjct: 617 LAGAKGMISL-DSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPLPFFLNAQLIK 675
Query: 640 LLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA---------IM 690
+L L V D +F +QA S+L ++ A L E N A I+
Sbjct: 676 ILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFL-----EDTNIAKSVGLPWLINIL 730
Query: 691 LSAGFKPQTEPHLQGMLTYE-LGELKECQCFIQVSESSLENCFS--------KHGSRFAE 741
G + + L+ ++ L +L++ + ++ + F K G F
Sbjct: 731 EGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVFCT 790
Query: 742 T-----KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPH 793
+ + ++N VV+ ++P + PGDV+I AVD P L L +C+ F Q G R
Sbjct: 791 SLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDL 850
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHV 840
+ SG DLDGDLY V +D L+P K+ P E + K L +
Sbjct: 851 PSMLSGGDLDGDLYNVIFDNTLLP--KRIARPAEYPRVQEKVLGRAVVREDIIDFFVTFM 908
Query: 841 NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKY 899
LG+I H ADR G FD C+LLA+L +TAVD KTG V + K P
Sbjct: 909 QQDQLGRIATIHQALADRRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCR 968
Query: 900 PDF------MEIEE-------------------------YQTYKSNKILGRLYRQI 924
PDF + I E + YKS ILG+LYR I
Sbjct: 969 PDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSI 1024
>gi|347830482|emb|CCD46179.1| similar to rna-dependent rna polymerase [Botryotinia fuckeliana]
Length = 1203
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 199/736 (27%), Positives = 314/736 (42%), Gaps = 138/736 (18%)
Query: 300 YKEGVSFEIMFLVNAVMHKGILNQHQLSD---SFFDLLRCQPREVIVTALKHIY---SYK 353
+ + F + F + + G L+ Q+ D +F + + VTA++ + Y
Sbjct: 316 FNNELPFPLTFQIQKLAQNGYLSPRQIIDLLPTFTSIFERTTLPICVTAMRRLVLQIPYP 375
Query: 354 RPVFDA--------YEKLKDVQECLIKNPKLNEGPKNI--DDIAEVRRLVITPTKAYWFL 403
P A E L +V++ + EG + A + R+ ITP Y
Sbjct: 376 GPNVKAEDFDKNAIIELLLEVEKASTREALYAEGFGGTASQNTALIHRVTITPAGFYLDG 435
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKT-- 450
+ +R F+RVTF DE + + L Y SN+ + +
Sbjct: 436 PEPESNNRILRKYAGNHSNFVRVTFCDE-----DGDRLQY---------ASNASNDEIYD 481
Query: 451 GVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV----LDIKNWMGE 506
GVF++V L DGF++ ++Y +L S + LR S WF + + + L I +G
Sbjct: 482 GVFRKV---LQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALHITQDLGR 538
Query: 507 FT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAME 565
F ++ AK AAR+G FS T T+ + T + DI+RNG VFSDG+G ++ L +
Sbjct: 539 FGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIERNGRVFSDGVGTMSEKLMEK 598
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK-SCHTSLEICS 624
+ L P+ +QIRY G KG+++ ++ G+++ LR SM KF+ S LEIC
Sbjct: 599 IWDRLPDKYLVKPTCFQIRYRGAKGMIS-LDSRLPGVKLRLRESMIKFEGSTSNDLEICG 657
Query: 625 WT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQ 683
+ P +LNRQ I +L L V E F +QA S+L ++ AS Q
Sbjct: 658 GAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLR------EITASAYNASTFLQ 711
Query: 684 GNTAAIMLSAGFKPQTEPHLQGM-LTY----------ELGELKECQCFIQVSESSLENCF 732
++ PQ H + L + E+ L E + + +E +
Sbjct: 712 SKRVGDVV---LLPQLIEHCSALDLDFRNDLFLRDILEMTVLIELRTLKHKARIPVERGY 768
Query: 733 SKHGSR---------------FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE-- 775
HG + K+ ++ VVI + P L PGD+++ AV+ P
Sbjct: 769 HLHGIMDETGILEEGEIYCCWIEDGKRTTLVGSNVVITRAPALHPGDIQLANAVNVPSDS 828
Query: 776 -LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL-----IPPS--KKSCPPME 827
L+ L +C+ F QKG R ++ SG DLDGDLYYV +DE++ + P+ +S P
Sbjct: 829 PLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYVIFDEDMKLKRTVKPADYSRSLPLDI 888
Query: 828 CTPAEAKPLT----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
P + + + + LG I N H V+AD+ G +C+ LA+L +TAVD K
Sbjct: 889 GRPVKQEDMADFFLTFMKTDQLGVISNRHQVYADQDVMGTECSDCLKLAELCSTAVDYSK 948
Query: 884 TGKIVTMPSHLKPKK---YPDFM--------------------------------EIEEY 908
TG + P+ PDFM E+
Sbjct: 949 TGIPPKLNDPSVPRHSLWRPDFMAPGPHVKISHRPDDRLGFAEKYIPIEVMDEEDEVTNI 1008
Query: 909 QTYKSNKILGRLYRQI 924
+ Y+S K G+LYR I
Sbjct: 1009 KYYESKKACGQLYRAI 1024
>gi|154290300|ref|XP_001545747.1| hypothetical protein BC1G_15659 [Botryotinia fuckeliana B05.10]
Length = 1080
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 199/736 (27%), Positives = 314/736 (42%), Gaps = 138/736 (18%)
Query: 300 YKEGVSFEIMFLVNAVMHKGILNQHQLSD---SFFDLLRCQPREVIVTALKHIY---SYK 353
+ + F + F + + G L+ Q+ D +F + + VTA++ + Y
Sbjct: 183 FNNELPFPLTFQIQKLAQNGYLSPRQIIDLLPTFTSIFERTTLPICVTAMRRLVLQIPYP 242
Query: 354 RPVFDA--------YEKLKDVQECLIKNPKLNEGPKNI--DDIAEVRRLVITPTKAYWFL 403
P A E L +V++ + EG + A + R+ ITP Y
Sbjct: 243 GPNVKAEDFDKNAIIELLLEVEKASTREALYAEGFGGTASQNTALIHRVTITPAGFYLDG 302
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKT-- 450
+ +R F+RVTF DE + + L Y SN+ + +
Sbjct: 303 PEPESNNRILRKYAGNHSNFVRVTFCDE-----DGDRLQY---------ASNASNDEIYD 348
Query: 451 GVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV----LDIKNWMGE 506
GVF++V L DGF++ ++Y +L S + LR S WF + + + L I +G
Sbjct: 349 GVFRKV---LQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALHITQDLGR 405
Query: 507 FT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAME 565
F ++ AK AAR+G FS T T+ + T + DI+RNG VFSDG+G ++ L +
Sbjct: 406 FGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIERNGRVFSDGVGTMSEKLMEK 465
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK-SCHTSLEICS 624
+ L P+ +QIRY G KG+++ ++ G+++ LR SM KF+ S LEIC
Sbjct: 466 IWDRLPDKYLVKPTCFQIRYRGAKGMIS-LDSRLPGVQLRLRESMIKFEGSTSNDLEICG 524
Query: 625 WT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQ 683
+ P +LNRQ I +L L V E F +QA S+L ++ AS Q
Sbjct: 525 GAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLR------EITASAYNASTFLQ 578
Query: 684 GNTAAIMLSAGFKPQTEPHLQGM-LTY----------ELGELKECQCFIQVSESSLENCF 732
++ PQ H + L + E+ L E + + +E +
Sbjct: 579 SKRVGDVV---LLPQLIEHCSALDLDFRNDLFLRDILEMTVLIELRTLKHKARIPVERGY 635
Query: 733 SKHGSR---------------FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE-- 775
HG + K+ ++ VVI + P L PGD+++ AV+ P
Sbjct: 636 HLHGIMDETGILEEGEIYCCWIEDGKRTTLVGSNVVITRAPALHPGDIQLANAVNVPSDS 695
Query: 776 -LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL-----IPPS--KKSCPPME 827
L+ L +C+ F QKG R ++ SG DLDGDLYYV +DE++ + P+ +S P
Sbjct: 696 PLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYVIFDEDMKLKRTVKPADYSRSLPLDI 755
Query: 828 CTPAEAKPLT----CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
P + + + + LG I N H V+AD+ G +C+ LA+L +TAVD K
Sbjct: 756 GRPVKQEDMADFFLTFMKTDQLGVISNRHQVYADQDVMGTECSDCLKLAELCSTAVDYSK 815
Query: 884 TGKIVTMPSHLKPKK---YPDFM--------------------------------EIEEY 908
TG + P+ PDFM E+
Sbjct: 816 TGIPPKLNDPSVPRHSLWRPDFMAPGPHVKISHRPDDRLGFAEKYIPIEVMDEEDEVTNI 875
Query: 909 QTYKSNKILGRLYRQI 924
+ Y+S K G+LYR I
Sbjct: 876 KYYESKKACGQLYRAI 891
>gi|406862357|gb|EKD15408.1| RNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1193
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 179/628 (28%), Positives = 287/628 (45%), Gaps = 115/628 (18%)
Query: 387 AEVRRLVITPTKAYW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVA 435
A + R+ ITP+ Y + D F+RV+F DE + + N
Sbjct: 416 AMIHRVTITPSGFYLGGPEYEPMNRVLRQYPKHHDSFIRVSFADEDGEPIRFN------- 468
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET 495
P V + F + G F LS GF++ GR++ FL FS + LR S WF S
Sbjct: 469 PKVSN--EKIFQDRFGTF------LSTGFHVAGRKFDFLGFSHSSLRAQSCWFMSPFAHN 520
Query: 496 SVLD----IKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV 550
L + +G+FT + AK AAR+G FS T V + P V LPD++R V
Sbjct: 521 GSLMYDRVLIQQLGDFTKIRCPAKCAARIGQAFSETPIAVPLEPGLV-QLLPDVERGSRV 579
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD---GIRMSLR 607
FSDG GKI+ + + +L P+ +QIRY G KG+++ DD G ++ +R
Sbjct: 580 FSDGCGKISRSIMHRIWAVLPDMRKHQPTCFQIRYQGAKGMLSL----DDTLEGDQVLMR 635
Query: 608 GSMKKFKSCHT-SLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM 665
SM KF + LE+C+ + + P +LNRQ+I ++ + V D+ F +Q+ +L
Sbjct: 636 PSMIKFDGSPSFDLELCNASYKSLPMYLNRQLIKIMEDIGVPDQWFLDLQSQEIERLRKA 695
Query: 666 LVASDVAFEVLTA-SCAEQGNTAAIM-----LSAGFKPQTEPHLQGMLTYELGELKECQC 719
++ A + L++ S ++ + + ++ +S F+ T+ L +L EL + E +
Sbjct: 696 TTSASNAAKFLSSHSIGDRVHLSWLIRKLAQMSIEFR--TDRFLCDVL--ELSVMLEVKT 751
Query: 720 FIQVSESSLENCFSKHG----------------SRFAETKKLQVINGFVVIAKNPCLRPG 763
+ + + +G + + K++ VI V++ ++P L PG
Sbjct: 752 LKHRARYPVPEGLTLYGIMDETGILEEGEIYCTYQSQKGKRMVVIQDRVLVTRSPALHPG 811
Query: 764 DVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL----- 815
DV+ ++AV+ P L L +C+ F QKGDR + SG DLDGDLY + WD
Sbjct: 812 DVQPVKAVNVPRDSPLSKLRNCICFSQKGDRDLPSMLSGGDLDGDLYNIIWDPGCQIRFK 871
Query: 816 -IPPSKKSCPPMECTPAEAKP-----LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCI 869
P P++ ++ + LG+I +H + AD+ + G FDE+C
Sbjct: 872 SFPADYPRQDPIDIGRQVSREDMTKFFVQFMETDQLGRIAMSHQILADQKDMGTFDEDCR 931
Query: 870 LLAKLAATAVDSPKTGKIVTMPSHLK--PKKYPDFMEIEE-------------------- 907
+LA++ +TAVD KTG V M K P + PDFM +
Sbjct: 932 ILAEMHSTAVDFSKTGVPVDMKKMPKFTPIR-PDFMSMGNHVRMEKKEGLLLEATTLSTQ 990
Query: 908 -----------YQTYKSNKILGRLYRQI 924
Y+ Y+S++ILG+LYR I
Sbjct: 991 DDNNDDDDFPAYRYYESDRILGKLYRAI 1018
>gi|453081039|gb|EMF09089.1| RdRP-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1253
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 166/546 (30%), Positives = 255/546 (46%), Gaps = 77/546 (14%)
Query: 454 KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF---FSKVGETSVLD-IKNWMGEFTA 509
+R + IL G + G+ ++FL FS + LR S WF F K G + + +G F+
Sbjct: 499 ERFQGILDKGITIAGKSFTFLGFSHSSLRSQSCWFMAPFVKAGSLMFAEKVIKELGNFSG 558
Query: 510 -KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
+ AK AAR+G F+ T+ +V + +V EL ++ RNG+ F+DG G I+ L EV +
Sbjct: 559 IRTPAKCAARIGQNFTDTNTSVRLQRDQV-FELAEVVRNGHDFADGAGTISKGLLEEVWK 617
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC---HTSLEICSW 625
+ P+A QIR+ G KG+VA + G R+ LR +M+K+ + H LEIC
Sbjct: 618 VYGTKRMLKPTALQIRFQGAKGMVA-QDTRLPGKRLMLRNNMRKYLTGADDHMDLEICGA 676
Query: 626 T-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM----LVASDVAFEVLTASC 680
R P LNR I +L L V ++ F +Q +L +M + + EV T+
Sbjct: 677 AFRPLPMILNRGFIKILEDLAVPEQSFINLQNKAMERLRMMTQSAINTGTLLDEVHTSKA 736
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLTYE-LGELKECQ--CFIQVSESSL------ENC 731
+ + + G + L + + EL++ + I V + E
Sbjct: 737 SGLPSLIRYLGQIGLDYHHDDFLYAAVELAVISELRDIKHRGRIPVPKGVTLFGVPDETG 796
Query: 732 FSKHGSRFAETK------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDC 782
+ K G F T+ K ++ V+I ++P L PGD+++ +AVD P + L +
Sbjct: 797 YLKEGEIFVITERGPTGGKEILVRDKVIITRSPALHPGDIQLAKAVDVPPGNSNRQLSNV 856
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP-----PSK-KSCPPMECTPAEAKP- 835
+VF + G R ++ SG DLDGDLY V WDE LIP P++ PP+E +
Sbjct: 857 VVFSKWGQRDLPSKLSGGDLDGDLYNVIWDETLIPWMIYAPAQYPRVPPVELPRDVTRKD 916
Query: 836 ----LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
+ + LG I N H+ AD+ G D +CI LA LA+TAVD KTG M
Sbjct: 917 MSDFFVTFMENDKLGLIANQHLQLADQRPMGTLDPDCIKLAALASTAVDYSKTGIPANMG 976
Query: 892 SHLKPKKY-PDFM----------------EIEEY----------------QTYKSNKILG 918
+ +P K+ PD+M E E++ + Y+S K+LG
Sbjct: 977 TAPRPAKFKPDYMAPNPRVVFSQEGLLDLEDEDFAPDEAFDTIDAERRPMRYYESQKVLG 1036
Query: 919 RLYRQI 924
LYR I
Sbjct: 1037 ILYRSI 1042
>gi|398389633|ref|XP_003848277.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339468152|gb|EGP83253.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1234
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 178/610 (29%), Positives = 263/610 (43%), Gaps = 132/610 (21%)
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFK----RVKSILSDGF 464
D FLRV F DE D + + +T + + R K++L
Sbjct: 454 TDFFLRVEFRDE-------------------DGATVRYDPRTDLHRVYHGRFKTVLDSSI 494
Query: 465 NLCGRRYSFLAFSSNQLRDHSAWFFSKV---GETSVLD-IKNWMGEFTA-KNIAKYAARM 519
+ GR +SFL FS + LR S WF + G D + +GEF + AK AAR+
Sbjct: 495 LISGRAFSFLGFSHSSLRSQSCWFMAPFVFNGSLRYADHVLQDLGEFKMIRTPAKCAARI 554
Query: 520 GLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPS 579
G F+ T+ +VE+ P +V + L D++RNG FSDG+G I+ +L V ++ P+
Sbjct: 555 GQNFTDTNTSVELRPEQV-YWLNDVERNGRTFSDGVGIISMELLQSVWRVYGTRRLLKPT 613
Query: 580 AYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEICSWT-RFQPGFLNRQI 637
QIR+ G KG+V+ + G ++LR SM+KF++ T LEIC R P LNRQ
Sbjct: 614 ILQIRFQGCKGMVSL-DTRLRGKCLALRKSMRKFQTETTWDLEICGAAFRPLPMILNRQF 672
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLML-VASDVAFEVLTASCAEQGNTAAIML---SA 693
+ L + +F +Q KL M A + A + C + +++
Sbjct: 673 TKIFEDLGIPLSVFMDLQQKSVDKLRRMTHSAINTANFLDETECTKAARVPSLIRYLGQM 732
Query: 694 GFKPQTEPHL------------------------QGMLTY----ELGELKECQCFIQVSE 725
G + +P L G+ Y E G LK + F+ +
Sbjct: 733 GLDYRHDPFLYNVVEMSVVSKLRDIKYRGRIPIDDGVTLYGIMDETGVLKANEIFVVTEK 792
Query: 726 SSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDC 782
+ L G R ++ V++ ++P + PGDV+I+ AVD P+ L L +
Sbjct: 793 APL-------GGRSV------LVRNNVIVTRSPAMHPGDVQIVNAVDVPQGSPLRQLSNV 839
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNH 842
+VF Q GDR + SG DLDGD+Y V W L+P P E L VN
Sbjct: 840 VVFSQHGDRDLPSMLSGGDLDGDIYNVIWLPQLVPEVTYDAADYPKVPTEE--LDRDVNR 897
Query: 843 QN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG---K 886
++ LG IC AH+ AD+ E G D +CI L+ +A+TAVD KTG
Sbjct: 898 KDMSDFFVKFMESDQLGMICTAHLQIADQRERGVLDPDCIKLSAMASTAVDFSKTGIPVN 957
Query: 887 IVTMPSHLKPKKYPDFM--------------------------------EIEEYQTYKSN 914
+ MP + + K PDFM E Y+ Y+S+
Sbjct: 958 LAQMPRYDRCK--PDFMAPSPRVIVSEQGYIAFEDEDEDEDVAFEGIDTERRSYRFYRSD 1015
Query: 915 KILGRLYRQI 924
K LG L+R I
Sbjct: 1016 KALGHLFRAI 1025
>gi|341885452|gb|EGT41387.1| hypothetical protein CAEBREN_32717 [Caenorhabditis brenneri]
Length = 1562
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 193/717 (26%), Positives = 318/717 (44%), Gaps = 137/717 (19%)
Query: 476 FSSNQLRDHSAWFFSK-----VGETS--VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTH 527
+S++Q+RD + ++ G S V +I+ WMG+F A ++ K +RMG CF+
Sbjct: 724 WSNSQMRDQGCYLYAPRVDPGTGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQ 783
Query: 528 ATVEIPPTEVDHEL--PDIK---RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
TV + E H + PD++ Y FSDG G+I+ LA + +IL+L + P+ +Q
Sbjct: 784 PTVRL---ERRHWIVEPDVEGGLSGKYCFSDGCGRISVKLANHITKILELKET--PACFQ 838
Query: 583 IRYAGYKGVVACWPAKDDGIRMS---LRGSMKKFKSCHTS-----LEICSWTRFQPGFLN 634
+R+ G+KG++ P DD I M R S +KF LE+ + P LN
Sbjct: 839 VRFKGFKGILVIDPTIDDIIGMPKVVFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLN 898
Query: 635 RQIITLLSTLN----------VSDEIFWTVQASMASKLNLMLVASDVAFEVLT-ASCAEQ 683
R IT+L ++ +++ I + ++ + S N++L + A E++ +
Sbjct: 899 RPFITILDQVSAKQSASSHRRITNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPID 958
Query: 684 GNTAAIMLSAGFKPQTEPHLQGML------------------------------TYELGE 713
N A+ AGF+ +P ++ ML E G
Sbjct: 959 WNKAS--KHAGFRLSKDPLIRSMLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGL 1016
Query: 714 LKECQCFIQVSESSLENCFSKHGSRFAETKKLQVI-NGFVVIAKNPCLRPGDVRILEAVD 772
L+ Q FIQ S+S +T ++ G V+I KNPC PGDVR+ EAV
Sbjct: 1017 LQYGQVFIQYSQS------------IRQTSATPILKTGKVLITKNPCHVPGDVRVFEAVW 1064
Query: 773 RPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP--PMECTP 830
+P L HL D +VFP+ G RPH +E +GSDLDGD Y + WD+ ++ + P P
Sbjct: 1065 QPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMIYPSSTAP 1124
Query: 831 AEAKPLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDS 881
E K T ++ ++G++ NAH+ +AD +G F ENC +A A AVD
Sbjct: 1125 EEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLTYADL--HGLFHENCRNIALKCAVAVDF 1182
Query: 882 PKTG-KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDI 940
PK+G + S + + PD+M Y S ++ G+L+R+ + E + E
Sbjct: 1183 PKSGVPAEPLASFEQCEMTPDYMATGGKPMYYSPRLNGQLHRKARKV--EEVLEEYETRG 1240
Query: 941 NPVDIHYDTDLEVPGSVD--FTADARNQKC-----SYDGQLNGLLGQYNV---------N 984
+ + YD + P D F ++A+ + Y ++ LL +Y + +
Sbjct: 1241 SIFEGEYDKII-CPDDADVFFGSEAKLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSGH 1299
Query: 985 RKEFRHIWSMPK-----YNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKN 1039
+ + M + Y++ K EL R + Y FR +F + F + ++D K
Sbjct: 1300 AASIKRLAGMERDDYSFYHTDKIVEL--RYEKLYHVFRAKFFEEFGGEAAHL-VNDGSKM 1356
Query: 1040 VL-----YEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
L +K WY V+Y + K+ + Q S W+ D L ++
Sbjct: 1357 RLNCTKAMREKVRQWYFVSYVQPKRNKTGKFIGQ---------SLPWVVWDALCDLR 1404
>gi|451855231|gb|EMD68523.1| hypothetical protein COCSADRAFT_178332 [Cochliobolus sativus ND90Pr]
Length = 1244
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 189/669 (28%), Positives = 293/669 (43%), Gaps = 133/669 (19%)
Query: 361 EKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR--------- 411
E ++D + + LN K +A + +TPT DV++R
Sbjct: 420 ENVEDCKHWGLAYRDLNGKQKKHHHLALTYKATVTPTGILLRGPDWDVSNRVLRRYTTRT 479
Query: 412 --FLRVTFMDE-GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
F+RV F DE GL + +S + + V++R +++L +G ++ G
Sbjct: 480 EYFMRVFFADEDGLSVFH-----------------DSRASQNQVYERFRNVLQNGISVAG 522
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVG-ETSVLDIKNW---MGEFTAKNI-AKYAARMGLCF 523
R + FL FS LR+H AWF + + S++ +N +G+F+ + AK AAR+G F
Sbjct: 523 RTFQFLGFSHASLRNHQAWFMAPFEMDGSLVRARNVIQDLGDFSHIHCSAKCAARIGQAF 582
Query: 524 SSTHATVEIPPTEVDHELP-DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP----- 577
S T +V +P T E+ D++RNG FSDG G I+ +L V + L PP
Sbjct: 583 SDTIFSVPVPETAYVTEVKDDVERNGRTFSDGCGTISLELLRTVWRAL-----PPERRQQ 637
Query: 578 -PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF--KSCHTSLEICSWTRFQP--GF 632
P+ QIRY G KGV++ A G ++ +R SM K+ K LE+C ++P F
Sbjct: 638 RPTVLQIRYRGAKGVLSL-DASLSGQQLHVRKSMTKYIAKETWRDLELCG-AAYKPLSVF 695
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLML--VASDVAFEVLTASC--AEQGNTAA 688
LN Q I +L L V E F VQ L L+ + +F + SC A+
Sbjct: 696 LNHQFIKILEDLGVPAEKFLDVQDEAVKILKLITEHPLNAASFLAYSHSCVFAKVPQLFE 755
Query: 689 IMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHG------------ 736
+M G + L ++ E+ + + + +E + +G
Sbjct: 756 MMHRIGLSFHADRFLTDIV--EVAAMSSLRSLKYRARIPIEKGYLLYGVMDETNTLKYGE 813
Query: 737 --------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVF 785
+ + K+ ++ +V+ + P L PGDV+++ AVD P+ L L +C+VF
Sbjct: 814 VYIATEDHDKTGKLKRSILVGNQIVVTRAPALHPGDVQLVNAVDVPDDSPLRALHNCVVF 873
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE--AKPLTC----- 838
Q+G R ++ SG DLDGDL+++ +D+ LIP + PA +P+
Sbjct: 874 SQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAYTVEPAEYDKVPANDLGRPVEANDIVD 933
Query: 839 ----HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
++ LGQI N H + AD G +C++LAKLA+ AVD KTG M L
Sbjct: 934 FFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDCLILAKLASDAVDFSKTGVPADMS--L 991
Query: 895 KPKKY----PDFME------IEEY-----------------------------QTYKSNK 915
PK PDFM I E + Y+S+K
Sbjct: 992 IPKGIDHFRPDFMAPGSNLVINELGAAELAGIEEDDIDDPDSISVLDADKGRIRYYRSDK 1051
Query: 916 ILGRLYRQI 924
ILG LYR I
Sbjct: 1052 ILGILYRAI 1060
>gi|212537491|ref|XP_002148901.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210068643|gb|EEA22734.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1207
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 178/650 (27%), Positives = 296/650 (45%), Gaps = 92/650 (14%)
Query: 356 VFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRV 415
+ D EK++++Q P G + + + E+ RL +TPT Y + + +R LR
Sbjct: 386 IIDTLEKIEEMQALEYLQPG-QPGYLHYNQM-EIHRLSVTPTGLYLDGPNVEAENRVLR- 442
Query: 416 TFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLA 475
+ ++ Q + + P++ DI+SN +F R + +L DG + R Y FL
Sbjct: 443 KYRNQSDQFIRVRFIEESGDPLMYDISSNL----DPIFDRFREVLRDGVIIADRHYRFLG 498
Query: 476 FSSNQLRDHSAWFFSKVGET------SVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHA 528
FS + LR S WF ++ ++ +V + + +G+F K +K+AAR+G FS T
Sbjct: 499 FSHSSLRSRSCWFMAEFHDSVTGEFITVNKLISKLGDFDHIKAPSKFAARLGQTFSDTLT 558
Query: 529 TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGY 588
++ + V + D++RNG VFSDG G I+ ++ + + + + P+ +Q+R +G
Sbjct: 559 SISVDKDMV-KRIDDVERNGRVFSDGCGTISKEILWRIYRDYPRNAAVRPTVFQVRISGA 617
Query: 589 KGVVACWPAKDDGIRMSLRGSMKKFKS-CHTSLEIC-SWTRFQPGFLNRQIITLLSTLNV 646
KG+++ P G + LR SM KF++ ++EIC S P +LN +I +L L V
Sbjct: 618 KGMLSLDPTL-KGPTICLRDSMIKFRAEADNNIEICGSGIHSLPCYLNAPLIKILEDLGV 676
Query: 647 SDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA----IMLSAGFKPQTEPH 702
++F +Q L + + A L + + + ++ S G +
Sbjct: 677 PRDLFLELQREEVESLRQTVRSPQHAAVFLDQAHISKSTRLSWLITLLQSMGVNYNQDGF 736
Query: 703 LQG----MLTYELGELKECQCFIQVSESSL-----ENCFSKHGSRFA-----ETKKLQV- 747
L+ ++ +L +LK + +L E + K G F ETK+ +
Sbjct: 737 LKRAVELVILMKLRDLKYKARILVPDGVTLYGIMDETGYLKEGEIFVPILNEETKRRDIL 796
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDG 804
+ V+I ++P PGDV++ AV+ PE L L +C+VF QKG R ++ SG DLDG
Sbjct: 797 VQDDVLITRSPAFHPGDVQLANAVNVPEDSPLRKLHNCVVFSQKGTRDLPSQLSGGDLDG 856
Query: 805 DLYYVTWDENL------IPPSKKSCPPMEC-TPAEAKPL----TCHVNHQNLGQICNAHV 853
D++ + +D P P E P + + + LG+I H
Sbjct: 857 DIFNIIYDPRFRLRRLAKPADYPRVPGTELGRPVQIDDIQDFFVTFMQQDQLGRIATTHK 916
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGK---IVTMPSHLKPKKYPDFM------- 903
+ AD+ G FD NC+ LA+L +TAVD KTG I +P + P PDFM
Sbjct: 917 ILADQQVKGTFDPNCLTLAQLHSTAVDFSKTGTPVDIKMIPRY--PPYRPDFMAPGPRVR 974
Query: 904 -----EI----EEY--------------------QTYKSNKILGRLYRQI 924
E+ +EY + YKS ++LG LYR I
Sbjct: 975 VAESIEVLDNGDEYIWNNDSESVIDDDDDVRPPMRYYKSRRVLGALYRMI 1024
>gi|328848635|gb|EGF97840.1| hypothetical protein MELLADRAFT_114044 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 166/536 (30%), Positives = 266/536 (49%), Gaps = 73/536 (13%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV--GETSVL--DIKNWMGEFT-A 509
R L+ G NLCGR++ FL +SS+ LR+H AWF G++ V I+ +G+F+
Sbjct: 504 RYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDSLVTAASIRQRLGDFSKV 563
Query: 510 KNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
NI A+Y AR+ F+ST ++ + P+++ + D++RNG F+DG+G I+PDLA +V +
Sbjct: 564 INIPARYMARVAQAFTSTRQSLTLLPSQIV-RIEDVERNGSCFTDGVGTISPDLARQVDE 622
Query: 569 ILKLDGSPP--------PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-S 619
+L G P S +QIR G+KG+++ P + +R SM KF S + +
Sbjct: 623 VLSA-GLPSRKRRHHAKSSCFQIRLGGFKGMLSVDPTLKQAC-VCVRPSMDKFVSPDSLT 680
Query: 620 LEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-T 677
L+I S+TR P +LNR +I +L L + +++F +Q + SK+ A E++
Sbjct: 681 LDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLRRASELMDQ 740
Query: 678 ASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQV---SESSLENCFSK 734
S A +I+ G E + Q E +L QCF + + L+ ++
Sbjct: 741 LSMARTSGMPSILRQLGTLMGDEGNTQSDFIEECYDLMIMQCFRDLKYRARIPLDASYTL 800
Query: 735 HGSRFAET---------------KKLQVINGFVVIAKNPCLRPGDVRILEAVDR------ 773
G + K + G + I+++PCL PGDVR++ + +
Sbjct: 801 VGVADEDQVLPPNFVYACIQYPGKAPFYLEGPITISRSPCLHPGDVRVVTGIGKLDLERA 860
Query: 774 PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA 833
P L+ L +C+VF G R + G DLDGDLY + LIP + + PP T E
Sbjct: 861 PRLNALRNCVVFSVAGMRSLPSCLGGGDLDGDLYTLITLPELIPATARLHPPASYTAPEM 920
Query: 834 K----PLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVD 880
K P T +++ +G I + H+ AD+++ G D+ C+ L L + AVD
Sbjct: 921 KRLDRPCTIEDGAAFFLDYISSDLVGVIASRHLHIADQADQGTRDDLCLELVSLHSDAVD 980
Query: 881 SPKTGKIVTM------PSHLKPKKYPDFMEIEEYQT------YKSNKILGRLYRQI 924
PKTG V + P+ +K PDFM E ++ Y+S K+LG+L+RQI
Sbjct: 981 YPKTGVPVAIDQLPRAPNRMK----PDFMCPEHHERREGDDYYESQKVLGKLFRQI 1032
>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1207
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 165/571 (28%), Positives = 273/571 (47%), Gaps = 74/571 (12%)
Query: 388 EVRRLVITPTKAYW-----------FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAP 436
E+ RL +TPT Y + + +D F+RV F++E P
Sbjct: 414 EIHRLSVTPTGIYLDGPNVEAENRVLRKYRHQSDYFIRVRFIEESGD------------P 461
Query: 437 IVKDITSNSFSQKTGVFK-RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET 495
++ DI+SN +FK R +L DG + R Y FL FS + LR S WF ++ ++
Sbjct: 462 MMYDISSNL----DRIFKDRFGEVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDS 517
Query: 496 -----SVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGY 549
+V + + +G+F+ ++ AK+AAR+G FS T ++ + V + D++RNG
Sbjct: 518 EGQLITVNSLISKLGDFSHIRSPAKFAARLGQTFSDTLTSISVDRDMVK-RIDDVERNGR 576
Query: 550 VFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGS 609
VFSDG G I+ ++ + + + + P+ +Q+R +G KG+++ P + G + LR S
Sbjct: 577 VFSDGCGTISKEVLWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDP-RLKGPTICLRDS 635
Query: 610 MKKFKS-CHTSLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLV 667
M KF++ ++EIC S P +LN +I +L L V+ ++F +Q L L +
Sbjct: 636 MIKFRAEADHNIEICGSGIHSLPCYLNAPLIKILEDLGVARDLFLELQREEVQNLRLAIR 695
Query: 668 ASDVAFEVLTASCAEQGNTAA----IMLSAGFKPQTEPHLQG----MLTYELGELKECQC 719
+ A L + + + ++ S G + L+ ++ +L +LK +
Sbjct: 696 SPRQAASFLDQAHITKSTRLSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLK-YRA 754
Query: 720 FIQVSESSL------ENCFSKHGSRFAE-----TKKLQV-INGFVVIAKNPCLRPGDVRI 767
I V E+ E + + G F TK+ + + V+I ++P PGDV++
Sbjct: 755 RILVPEAVTLYGIMDETGYLQEGEIFVPILNEVTKRRNILVQNKVLITRSPAFHPGDVQM 814
Query: 768 LEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD-----ENLIPPS 819
+ AV+ PE L L +C+VF QKG+R ++ SG DLDGD++ + +D + L P+
Sbjct: 815 VNAVNVPEASPLRKLHNCVVFSQKGERDLPSQLSGGDLDGDIFNIIYDPRFRLQRLARPA 874
Query: 820 KKSCPPMEC--TPAEA----KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAK 873
P P + K + LG+I H + AD+ G FD NC+ LA
Sbjct: 875 DYPRAPGTVLDRPVQMEDIQKFFIEFMQQDQLGRIATTHKILADQQAAGTFDPNCLTLAH 934
Query: 874 LAATAVDSPKTGKIVTMPSHLK-PKKYPDFM 903
L +TAVD KTG V + K P PDFM
Sbjct: 935 LHSTAVDFSKTGTPVDIKQIPKYPPYRPDFM 965
>gi|302907308|ref|XP_003049617.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
gi|256730553|gb|EEU43904.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 196/671 (29%), Positives = 292/671 (43%), Gaps = 151/671 (22%)
Query: 372 KNPKLNE--GPKNIDDIAEVRRLVITPTKAYWF---LESK--------DVADRFLRVTFM 418
+NP+ + G K D V + ++TPT+ ESK D D FLRV F
Sbjct: 409 ENPQRDRIYGSKLPDHQVWVFKALVTPTRVLLHGPDAESKNRVLRMFPDNNDSFLRVIFC 468
Query: 419 DEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSS 478
DE Q +N N P + + F R + ++ DG ++ GR+Y+FL FS
Sbjct: 469 DEDGQDLNFN-------PRIDN---------EDTFSRYRKVMDDGIDIAGRKYTFLGFSH 512
Query: 479 NQLRDHSAWFFS-----KVGETSVLDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEI 532
+ LR HSAWF S ++ I +G+F + AK AAR+G FS T V +
Sbjct: 513 SSLRSHSAWFASPFVDGNYQSQTISVILEALGDFQDIRVPAKCAARIGQAFSETPYAVPL 572
Query: 533 PPTEVD-HELPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYK 589
+ +PDIK VFSDG+G I+ D +V L + S P+ QIR+ G K
Sbjct: 573 FENSITTRHIPDIKTADGSRVFSDGVGTISQDALEDVWMYLPMR-SAAPTCLQIRWGGCK 631
Query: 590 GVVACWPAKDDGIRMSLRG-SMKKFKSCH-TSLEICSWTRFQPG--FLNRQIITLLSTLN 645
G+++ + +G +R SM KF S T L IC T +P LNRQ+I +L +
Sbjct: 632 GMLSL-DTRLEGKTFCIRKESMMKFPSNDLTELGICD-TSSKPLRLVLNRQMIKILEDMG 689
Query: 646 VSDEIFWTVQA--------------SMASKLNLMLVASDVAFEVLTASCAEQG------- 684
++ F+ +Q + ++ L + ++ L G
Sbjct: 690 TQNDWFFDLQNKALNVLRGVTASAHNTSTFLEYQTIGVNMGLPKLVKQLDRMGIDYRRDK 749
Query: 685 ------------------NTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSES 726
+ A I + G L G++ E G LKE Q ++ ++
Sbjct: 750 FLRSAVEHVVLRELRLLKHKARIPVEKGVT------LFGVMD-ETGFLKERQVYVTYDKT 802
Query: 727 SLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCL 783
K+G R T + +G +++ ++P L PGD+++ E V P+ H +L +C+
Sbjct: 803 Y----GVKNGRRINATLE----DGIILVTRSPALHPGDIQVAEMVTPPKGHPLRNLQNCI 854
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ 843
VF QKGDR ++ SG DLDGDLY + WDE +P +K P + PL V +
Sbjct: 855 VFSQKGDRDLPSQLSGGDLDGDLYNIIWDERAMP--EKVFEPADYPRVTPVPLDRPVTPK 912
Query: 844 N-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
+ LG I HV+ AD + G CI LA++ +TAVD KTG V +
Sbjct: 913 DIADFFINFMRTDILGMIATRHVMLADSHDLGTLHPECISLAEMHSTAVDFSKTGIPVEV 972
Query: 891 PSHLKPKKY-PDFMEI------------------EEY-----------QTYKSNKILGRL 920
KP ++ PDF+ + EEY + YKS KILG L
Sbjct: 973 KKLPKPPRFRPDFLAMAPPLKLYDLGQIDHIGDPEEYDEDDMMARAKPKYYKSTKILGHL 1032
Query: 921 YRQIKGAYDEN 931
YR + DEN
Sbjct: 1033 YRSV----DEN 1039
>gi|452977804|gb|EME77568.1| hypothetical protein MYCFIDRAFT_60792 [Pseudocercospora fijiensis
CIRAD86]
Length = 1015
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 273/599 (45%), Gaps = 99/599 (16%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D F+RV F DE + P+ D ++ +R +++L +CGR
Sbjct: 242 DDFVRVVFQDE------------HGGPVRYDPRTD---LARIYHERFRNVLDTSIVICGR 286
Query: 470 RYSFLAFSSNQLRDHSAWFFSK-VGETSVL----DIKNWMGEFTA-KNIAKYAARMGLCF 523
+SFL FS + LR S WF + V L + +G+F++ + AK AAR+G F
Sbjct: 287 GFSFLGFSHSSLRSQSCWFMAPFVNRNGRLIFAEKVLKGLGDFSSIRTPAKCAARIGQNF 346
Query: 524 SSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQI 583
+ T+ATV + P +V +L I+RNG FSDG+G I+ L EV + P+ QI
Sbjct: 347 TDTNATVHLEPDQV-FDLQVIERNGRDFSDGVGTISEALLREVWRRYGTKKMLKPTVLQI 405
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS--LEIC-SWTRFQPGFLNRQIITL 640
R+ G KG+V+ P + G + LR +M+K+ + TS LEIC + + P LN+Q I +
Sbjct: 406 RFQGAKGMVSLDP-RLPGKALMLRANMRKYDT-ETSWVLEICGAGFKPLPMVLNQQFIKI 463
Query: 641 LSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIML----SAGFK 696
L + +F +Q S L M S + ++L S + ++ GF
Sbjct: 464 FEDLGIPMSVFLDLQRSAMKHLRQMTALSVNSAKLLEDSGIARATGMPRLIRDLAQIGFD 523
Query: 697 PQTEPHLQGMLTYE-LGELKECQCFIQVS-ESSL-------ENCFSKHGSRFAETKKLQ- 746
+ L ++ + +L++ + ++ E+ + E + K G F T+K
Sbjct: 524 YHEDHFLYSIVEMAVVTQLRDIKYRARIPVEAGVTLYGIMDETGYLKEGQIFVITEKAPE 583
Query: 747 -----VINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEAS 798
+I VVI ++P + PGD+++++AVD P L L + +VF + GDR ++ S
Sbjct: 584 GGKHILIKDKVVITRSPAMHPGDIQVVDAVDVPPNSLLRRLSNVVVFSKWGDRDLPSKLS 643
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCP------PM----ECTPAEAKP-LTCHVNHQNLGQ 847
G DLDGD+Y + W E ++P + + P+ E T + + LG
Sbjct: 644 GGDLDGDIYNIIWHEGMVPRTTYTAADYPRVSPLVLDREVTIKDMSDFFVTFMETDLLGM 703
Query: 848 ICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG---KIVTMPSHLKPKKYPDFM- 903
IC H AD+ E G+ D +C+ LA LA+TAVD KTG K +P + K PDFM
Sbjct: 704 ICTTHKQLADQREAGSLDPDCLTLAGLASTAVDYSKTGISVKHTQIPRNDKHIFRPDFMS 763
Query: 904 -------------------------------EIEEYQTYKSNKILGRLYRQIKGAYDEN 931
E Y+ Y S K LG LYR I DEN
Sbjct: 764 PTPRVVVSSEGLADLEKEEEVDDDAFEGLDSERRSYRYYPSEKTLGHLYRDI----DEN 818
>gi|169625035|ref|XP_001805922.1| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
gi|160705585|gb|EAT76879.2| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
Length = 1234
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 196/662 (29%), Positives = 284/662 (42%), Gaps = 156/662 (23%)
Query: 384 DDIAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSY 432
D + + ITPT + D ++R F+RV+F DE + +S
Sbjct: 429 DHVVLTHKATITPTGIFLRGPDADTSNRILRKYSQYTDYFMRVSFTDE-------DGVSV 481
Query: 433 YVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-- 490
+ P + + V++R + IL +G ++ GR + FL FS LR H WF +
Sbjct: 482 FHDPK---------ASQHEVYERFRKILREGIHVAGRHFEFLGFSHASLRCHQVWFMASF 532
Query: 491 --KVGETSVLDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELP-DIKR 546
K D+ +G+F A+ AAR+G FS T V+IP T E DI R
Sbjct: 533 IFKGLPICARDVIQNLGDFNGFTCSARCAARIGQAFSDTIFAVQIPSTATILETKEDITR 592
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKLDGSPP-----PSAYQIRYAGYKGVVACWPAKDDG 601
N VFSDG G +++E+ Q+L +P P+ QIR G KGV++ + G
Sbjct: 593 NNRVFSDGCGT----MSLELFQLLWRKLNPQQRRKRPTVLQIRCRGAKGVLSL-DSSLVG 647
Query: 602 IRMSLRGSMKKF--KSCHTSLEICSWTRFQP--GFLNRQIITLLSTLNVSDEIFWTVQAS 657
+ +R SM KF S LEICS ++P +LN Q I +L L V + F VQ
Sbjct: 648 EELHIRKSMTKFIAGSEWRDLEICS-AAYRPLRVYLNHQFIKILEDLGVPPQNFIKVQNE 706
Query: 658 MASKLNLMLVASDVAFEVL-------------TASCAEQGNTAAIMLSAGFKPQTEPHL- 703
+L L++ A + L +A A+ +M AG QT+ L
Sbjct: 707 ARKQLELIVKHPLNAADFLRKHKTNIRTGYSHSADHAKIPRLFELMHYAGLSFQTDQFLC 766
Query: 704 -----------------------QGMLTY----ELGELKECQCFIQVSESSLENCFSKHG 736
G L Y E LKE + ++ + + G
Sbjct: 767 EIVEVAAMSSIRDLKYRARIPVESGHLLYGIMDETNTLKEGEVYVATEDET------PSG 820
Query: 737 SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPH 793
R +K +I VV+ + P L PGDV+++ AV+ P+ L L +C+VF Q+G R
Sbjct: 821 RR----EKNILIGDRVVVTRAPALHPGDVQLVSAVNVPDGSPLRSLHNCIVFSQQGARDL 876
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT---------PAEAKPLT----CHV 840
++ SG DLDGDL++V WD LIP K + P + P E + +
Sbjct: 877 PSQLSGGDLDGDLFHVIWDPLLIP--KYTVPAADYAAAAPFNLGRPVEVNDIVDFFIGFM 934
Query: 841 NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG---KIVTMPSHLKPK 897
+ LGQI N H + AD+ E G FD +CILLAKLA+ AVD K+G K +P +
Sbjct: 935 QNDKLGQISNMHKIRADKRENGTFDSDCILLAKLASDAVDFSKSGVPAKTSDIPRDIDII 994
Query: 898 KYPDFM-------------------EIEEYQT----------------YKSNKILGRLYR 922
+ PDFM EIE+ + Y+S K LG LYR
Sbjct: 995 R-PDFMAPGHNFVINDLGSTELQDLEIEDIEDPDSLSILDHDMSRVRYYRSKKALGHLYR 1053
Query: 923 QI 924
I
Sbjct: 1054 AI 1055
>gi|330921324|ref|XP_003299375.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
gi|311326958|gb|EFQ92511.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
Length = 1237
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 207/758 (27%), Positives = 323/758 (42%), Gaps = 174/758 (22%)
Query: 302 EGVSFEIMFLVNAVMHKGI---LNQHQLSDSFFDLLRCQPREVIVTALKHI--------- 349
+ +F + + V A+M +GI LN +L + L + + A++ +
Sbjct: 336 QAFNFAVRYQVMALMLEGIITPLNVIKLLPYIYVLAKQHGSDFTANAVRQLGQQIPTPSP 395
Query: 350 ------YSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFL 403
++ +R E + + ++ + +LN K +A + +TPT
Sbjct: 396 QDDAKSFTTQRLAHRLRESIAESEKRELIARELNVKQKKHYHLALTYKATVTPTGILLRG 455
Query: 404 ESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
DV++R F+RV F DE + LS + P + + V
Sbjct: 456 PDWDVSNRILRKYGTRTEYFMRVFFADE-------DGLSVFHDP---------RASQDNV 499
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL----DIKNWMGEFT 508
++R +S+L +G ++ R Y FL FS LR H AWF + DI + +G+F+
Sbjct: 500 YERFRSVLRNGISVSERTYQFLGFSHASLRTHQAWFMAPFEMNGTRFRARDIISDLGDFS 559
Query: 509 AKNI-AKYAARMGLCFSSTHATVEIPPTE-VDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
+ A+ +AR+G FS T +V + T V PDI RNG FSDG G I+ ++ +V
Sbjct: 560 HIHCSARCSARIGQAFSDTIFSVPVSSTAYVTETKPDIVRNGRTFSDGCGTISLEILRKV 619
Query: 567 AQILKLDGSPP------PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF--KSCHT 618
L PP P+ QIR+ G KGV++ G ++ +R SM K+ K
Sbjct: 620 WNTL-----PPERKTQRPTILQIRFRGAKGVLSL-DESLAGEQLHIRQSMTKYIAKETWR 673
Query: 619 SLEICSWTRFQP--GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLML---------- 666
LE+C ++P FLN Q I +L L V F VQ + L ++
Sbjct: 674 DLELCG-AAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAASFL 732
Query: 667 ------VASDVA--FEVL---------------TASCAEQGNTAAIMLSAGFKPQTEPHL 703
V + V FE++ A N ++ A P + HL
Sbjct: 733 EYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARI-PIEQGHL 791
Query: 704 QGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
+ E L+E Q +I + + K GS + ++ ++ +VI + P L PG
Sbjct: 792 LYGIMDETNFLQEGQVYIATQD------YEKSGS--GKLQRRILVGERIVITRAPALHPG 843
Query: 764 DVRILEAVDRP---ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
DV+++ AVD P L L +C+VF Q+G R ++ SG DLDGDL+++ +D+ L+P
Sbjct: 844 DVQLVTAVDVPANSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLVP--D 901
Query: 821 KSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDEN 867
+ PP + A+ L H+N LGQI N H + AD+S G D
Sbjct: 902 FTVPPADYKSNGARDLGRPVEVNDIVDFFIEHMNMDRLGQISNKHKIRADKST-GTKDPE 960
Query: 868 CILLAKLAATAVDSPKTG------KIVTMPSHLKPKKYPDFM--------------EIEE 907
C+LLA+LA+ AVD K+G KI H++ PDFM E+EE
Sbjct: 961 CLLLAQLASDAVDFSKSGIPADISKIPRGFDHIR----PDFMAPGTNLVVNELGAAELEE 1016
Query: 908 YQT---------------------YKSNKILGRLYRQI 924
+ YKS+KILG LYR I
Sbjct: 1017 LEPDDIDDPDGVSVLDADKGRSRYYKSDKILGILYRDI 1054
>gi|389628880|ref|XP_003712093.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351644425|gb|EHA52286.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1292
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 205/750 (27%), Positives = 334/750 (44%), Gaps = 139/750 (18%)
Query: 385 DIAEVRRLVITPTKAYWF---LESKDVADR--------FLRVTFMDEGLQTMNANVLSYY 433
++ + R+V+TPT+ +E+K+ R F+RV F DE Q +
Sbjct: 450 NLTHIYRVVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR------- 502
Query: 434 VAPIVKDITSNSFSQKTG---VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW--- 487
FS K V+ R +L+ G + GR Y+FL FS + LR HSAW
Sbjct: 503 ------------FSPKISYDRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSA 550
Query: 488 -FFSKVGETSVLDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEI--PPTEVDHELPD 543
FF + + + I +GEF++ AK AAR+G FS T + V++ EV PD
Sbjct: 551 PFFDQGSQHTHASIIKSLGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPD 610
Query: 544 I-KRNG-YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDG 601
I R+G VFSDG+GKI+ + + + + + + P+ +Q+R+ G KG++A G
Sbjct: 611 ITNRDGSRVFSDGVGKISESMMHIIWENIPMKKN-APTCFQVRWGGAKGMLAL-DMTLKG 668
Query: 602 IRMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMA 659
++ R SM KF+S LEIC S ++ P LNRQ+I +L + F +Q+
Sbjct: 669 TKVCFRDSMTKFESDDVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRL 728
Query: 660 SKLNLMLVASDVAFEVLTASCAEQ----GNTAAIMLSAGFKPQTEPHL----QGMLTYEL 711
+L + ++ + L A Q G G +T+ + + ++ EL
Sbjct: 729 QELRSITASAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLREL 788
Query: 712 GELK-ECQCFIQVSESSL----ENCFSKHGS-----RFAETKKLQVI----NGFVVIAKN 757
LK + + ++ ++ E + + G F++T + Q V++ ++
Sbjct: 789 RLLKHKARIPVKYGKTLFGIIDETGYLREGEVVISFGFSQTGEDQPTPPQDGQIVIVTRS 848
Query: 758 PCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
P L PGD++I + V P H H +C++F Q G R ++ SG DLDGD+Y V WD +
Sbjct: 849 PALHPGDIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGD 908
Query: 815 LIPPSKKSCPPMECTPAEAKPLTCHV-------------NHQNLGQICNAHVVHADRSEY 861
+P K++ P + EA+ + V +LG I HV+ AD+ +
Sbjct: 909 AMP--KETFDPADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDD 966
Query: 862 GAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFME--------------IE 906
G + C LA L +TAVD K+G + + + K+ PDF+ +E
Sbjct: 967 GTLSQECRTLAGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHDKGKITLE 1026
Query: 907 EYQT------------------YKSNKILGRLYRQI--KGAYDENISVSSEVDINP---- 942
EY Y+S K+LG+LYR+I + ++ENI V+ VD N
Sbjct: 1027 EYTISEEAEEEEEEGDGPRYGYYRSEKVLGQLYREIDEEKIWNENIRVA--VDHNKPSFW 1084
Query: 943 ---VDIHYDTDLEVPGSVDFTA---DARNQKCSYDGQLNGLLGQYN---VNRKEFRHIWS 993
+D + V G+V + AR K +YD + G + +Y+ VN R ++
Sbjct: 1085 ETFIDWAIKSAATV-GAVSWPVRIDSARRLKSAYDDHVRGHMSKYSDHPVNPISEREVFI 1143
Query: 994 MPKYNSRKQGELQERLKHSYSAFRKEFRQV 1023
N K G R + + R EF +
Sbjct: 1144 GAILN--KTGVQTHRQRDASHKLRDEFERT 1171
>gi|440476070|gb|ELQ44707.1| RNA-dependent rna polymerase [Magnaporthe oryzae Y34]
gi|440486893|gb|ELQ66719.1| RNA-dependent rna polymerase [Magnaporthe oryzae P131]
Length = 1338
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 205/750 (27%), Positives = 334/750 (44%), Gaps = 139/750 (18%)
Query: 385 DIAEVRRLVITPTKAYWF---LESKDVADR--------FLRVTFMDEGLQTMNANVLSYY 433
++ + R+V+TPT+ +E+K+ R F+RV F DE Q +
Sbjct: 450 NLTHIYRVVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR------- 502
Query: 434 VAPIVKDITSNSFSQKTG---VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW--- 487
FS K V+ R +L+ G + GR Y+FL FS + LR HSAW
Sbjct: 503 ------------FSPKISYDRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSA 550
Query: 488 -FFSKVGETSVLDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEI--PPTEVDHELPD 543
FF + + + I +GEF++ AK AAR+G FS T + V++ EV PD
Sbjct: 551 PFFDQGSQHTHASIIKSLGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPD 610
Query: 544 I-KRNG-YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDG 601
I R+G VFSDG+GKI+ + + + + + + P+ +Q+R+ G KG++A G
Sbjct: 611 ITNRDGSRVFSDGVGKISESMMHIIWENIPMKKN-APTCFQVRWGGAKGMLAL-DMTLKG 668
Query: 602 IRMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMA 659
++ R SM KF+S LEIC S ++ P LNRQ+I +L + F +Q+
Sbjct: 669 TKVCFRDSMTKFESDDVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRL 728
Query: 660 SKLNLMLVASDVAFEVLTASCAEQ----GNTAAIMLSAGFKPQTEPHL----QGMLTYEL 711
+L + ++ + L A Q G G +T+ + + ++ EL
Sbjct: 729 QELRSITASAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLREL 788
Query: 712 GELK-ECQCFIQVSESSL----ENCFSKHGS-----RFAETKKLQVI----NGFVVIAKN 757
LK + + ++ ++ E + + G F++T + Q V++ ++
Sbjct: 789 RLLKHKARIPVKYGKTLFGIIDETGYLREGEVVISFGFSQTGEDQPTPPQDGQIVIVTRS 848
Query: 758 PCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
P L PGD++I + V P H H +C++F Q G R ++ SG DLDGD+Y V WD +
Sbjct: 849 PALHPGDIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGD 908
Query: 815 LIPPSKKSCPPMECTPAEAKPLTCHV-------------NHQNLGQICNAHVVHADRSEY 861
+P K++ P + EA+ + V +LG I HV+ AD+ +
Sbjct: 909 AMP--KETFDPADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDD 966
Query: 862 GAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFME--------------IE 906
G + C LA L +TAVD K+G + + + K+ PDF+ +E
Sbjct: 967 GTLSQECRTLAGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHDKGKITLE 1026
Query: 907 EYQT------------------YKSNKILGRLYRQI--KGAYDENISVSSEVDINP---- 942
EY Y+S K+LG+LYR+I + ++ENI V+ VD N
Sbjct: 1027 EYTISEEAEEEEEEGDGPRYGYYRSEKVLGQLYREIDEEKIWNENIRVA--VDHNKPSFW 1084
Query: 943 ---VDIHYDTDLEVPGSVDFTA---DARNQKCSYDGQLNGLLGQYN---VNRKEFRHIWS 993
+D + V G+V + AR K +YD + G + +Y+ VN R ++
Sbjct: 1085 ETFIDWAIKSAATV-GAVSWPVRIDSARRLKSAYDDHVRGHMSKYSDHPVNPISEREVFI 1143
Query: 994 MPKYNSRKQGELQERLKHSYSAFRKEFRQV 1023
N K G R + + R EF +
Sbjct: 1144 GAILN--KTGVQTHRQRDASHKLRDEFERT 1171
>gi|296810484|ref|XP_002845580.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238842968|gb|EEQ32630.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1152
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 180/629 (28%), Positives = 279/629 (44%), Gaps = 116/629 (18%)
Query: 389 VRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPI 437
V R ++TP Y +V +R FLRV F+DE N + + +
Sbjct: 365 VHRAMVTPCGIYLLGPYAEVKNRILRKYLGNTDYFLRVEFLDE-----NGDPVFFDPNAN 419
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--KVGET 495
++ I FS GV KR G + GR ++FL FS + LR + WF + +
Sbjct: 420 LEKIFHERFS---GVMKR-------GIEVAGRNFNFLGFSHSSLRSQTCWFAAPFTTPDG 469
Query: 496 SVLD---IKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVF 551
LD I N +G F ++ +K AAR+G FS T ++ + V +PD++RNG +F
Sbjct: 470 EYLDARTIINSIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEAVRLRVPDVERNGRIF 529
Query: 552 SDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMK 611
SDG+G I+ +L ++ L P+ +QIR AG KG+V+ ++ G + LR SM
Sbjct: 530 SDGVGVISRELMYKIWNEYALREKVKPTVFQIRIAGAKGMVSLDTSR-QGEFLMLRESMV 588
Query: 612 KFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS 669
KF + + ++EIC + + P +LN QII +L L V F +Q L ++
Sbjct: 589 KFPTDDSYNIEICGAGIKALPFYLNSQIIKILEDLGVPFAAFHQLQQDEILSLYSTFNST 648
Query: 670 DVAFEVLTASCAEQG----NTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSE 725
+ A + L S + ++ G + +P L ++ EL L + + +
Sbjct: 649 EQAAKFLEDSPVPRSLRLPWLLLVLKGLGLRYTLDPFLHRIM--ELTTLLKLRDLKYRAR 706
Query: 726 SSLENCFSKHGSRFAETKKLQ-----------------VINGFVVIAKNPCLRPGDVRIL 768
+ N + +G ET L+ ++ VV+ ++P L PGDV+++
Sbjct: 707 IRVPNAVTLYGI-MDETGYLKENEIYCVFLSEDGRREILVRDNVVVTRSPALHPGDVQVV 765
Query: 769 EAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPP 825
AVD P L L +C+ F Q G R + SG DLDGDLY + +D LIP +++ PP
Sbjct: 766 NAVDVPANSPLRRLHNCVAFSQHGVRDLPSMLSGGDLDGDLYNIIYDTRLIP--QQTFPP 823
Query: 826 MECTPAEAKPLTCHV-------------NHQNLGQICNAHVVHADRSEYGAFDENCILLA 872
+ + + L V LG+I H AD+S G DE C+ LA
Sbjct: 824 ADYPLVKTRELNRKVESNDIIDFFVTFMQQDQLGRIATTHQAIADQSSLGTRDETCLKLA 883
Query: 873 KLAATAVDSPKTG---KIVTMPSHLKPKKYPDFM----------EIEE------------ 907
L + AVD K+G ++ +P P+ PDFM IE+
Sbjct: 884 HLHSVAVDYSKSGIPVNVLDIPR--APRIRPDFMAPSPRILIEDSIEDSIEHIIRETEKT 941
Query: 908 ------------YQTYKSNKILGRLYRQI 924
+ YKS+ ILGRLYR I
Sbjct: 942 VQEDDDDNDRPRIRYYKSHNILGRLYRSI 970
>gi|400595821|gb|EJP63611.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1328
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 188/618 (30%), Positives = 267/618 (43%), Gaps = 137/618 (22%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D FLRVTF DE +N N SN + V+ +S++ G +
Sbjct: 510 DRTDYFLRVTFTDEDGSDLNFN-----------HRVSNDY-----VYDHYRSVMKQGIEV 553
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFS-----KVGETSVLDIKNWMGEFTAKNI-AKYAARMG 520
GRR+SFL FS + LR HSAWF + ++G + N +G+F I AK AAR+G
Sbjct: 554 AGRRFSFLGFSHSSLRSHSAWFMAPFVDNRMGRQDYATVLNSLGDFREIRIPAKCAARIG 613
Query: 521 LCFSSTHATVEIPPTE-VDHELPDIKR---NGYVFSDGIGKITPDLAMEVAQILKLD-GS 575
FS T V + + V + D++ VFSDG+G I+ E +L L+ GS
Sbjct: 614 QAFSETPYAVSLRGSSIVISYIEDVRSYVDESRVFSDGVGTISQGALEEFWDVLPLNLGS 673
Query: 576 PPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRG-SMKKFKSCH-TSLEICS-WTRFQPGF 632
P+ QIR AG KG+++ P + G ++ +R SM KF S + IC R
Sbjct: 674 --PTCVQIRVAGIKGMLSLDP-RLLGKQICIRAESMMKFPSRDFVEIGICEVAARPLRLV 730
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--- 689
LNRQ+I +L + + F +QA A E L A NT
Sbjct: 731 LNRQMIKILEDMGTNRTWFRAMQAK--------------ALETLRGVTATAANTCTFLEY 776
Query: 690 ---------------MLSAGFKPQTEPHLQGMLTY----ELGELKE---------CQCFI 721
M + G + +P L+G++ Y EL LK F
Sbjct: 777 QGVGSSIRLPRFIRRMHAHGIDYRGDPFLKGVVEYVVLRELRLLKHKARIPIEKGVTLFG 836
Query: 722 QVSESSL--ENCFSKHGSRFAETKKLQV----INGFVVIAKNPCLRPGDVRILEAVDRPE 775
+ E+ E H R A +K + ++G VV+ ++P L PGD+++ + V PE
Sbjct: 837 VMDETGFLKEGEIYIHYDRRAPGRKDGIEDSLVDGPVVVTRSPALHPGDIQLAKMVTPPE 896
Query: 776 LH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE 832
H L +C+VF Q+G R ++ SG DLDGD Y V WD +P + P +
Sbjct: 897 KHPLRALRNCIVFSQRGGRDLPSQLSGGDLDGDKYNVIWDGGALP--RSVFAPASYPRNK 954
Query: 833 AKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAV 879
+PL V + LG I N H+++AD GA D CI LA+L +TAV
Sbjct: 955 PQPLDRDVTRDDIASFFIEFMRTDVLGLIANRHLMYADIQPAGADDPTCIKLAELHSTAV 1014
Query: 880 DSPKTG---KIVTMPSHLKPKKYPDFMEIE------------------------------ 906
D KTG I +P +PK PDFM
Sbjct: 1015 DYSKTGIPPLINEIPR--QPKTKPDFMAPAPPTTTYDLGDVAFVEVDEEEDEGDDGFGRP 1072
Query: 907 EYQTYKSNKILGRLYRQI 924
+Y+ +KS KILG+LYR I
Sbjct: 1073 KYRYHKSEKILGQLYRAI 1090
>gi|240282192|gb|EER45695.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 396
Score = 192 bits (489), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 192/381 (50%), Gaps = 50/381 (13%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAK 510
V+ RV IL G + R Y FLAF ++Q R+H A+FF+ + + +I+ MG+ K
Sbjct: 4 VYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNNIK 63
Query: 511 NIAKYAARMGLCFSSTHATVEIPPT--EVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
+AKYAAR+G CFS+T A P EVD DI+RNGYVFSDG+G+++ L +
Sbjct: 64 VVAKYAARLGQCFSTTRAVTSCPVQLKEVD----DIERNGYVFSDGVGRLSHFLTQMIRS 119
Query: 569 ILKLD--GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
L ++ PPSA+Q R G KG++A + G + +R S KF + H LEI +
Sbjct: 120 DLGINTPSGQPPSAFQFRLGGCKGILAV-SSDAHGQEVHIRKSQYKFAAAHHGLEIIRHS 178
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
F LNRQ+I +LS L V D++F M KL + + A +L T
Sbjct: 179 HFSLATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQTHVDPNQMT 238
Query: 687 AAI--MLSAGFKPQTEPHLQGML----TYELGELKECQCFIQVSESS-LENCF------- 732
+ M+ GF+ EP + +L T+++ LKE + I + E + L C
Sbjct: 239 LILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKE-KAKIAIDEGAFLLGCIDETKTLK 297
Query: 733 -----SKHGS-------------------RFAETKKLQVINGFVVIAKNPCLRPGDVRIL 768
S+ G R +E K + +I G ++A+NP L PGD+R++
Sbjct: 298 GYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKYV-IIEGVCILARNPSLHPGDIRVV 356
Query: 769 EAVDRPELHHLCDCLVFPQKG 789
+AV+ P LHHL D +V PQ G
Sbjct: 357 KAVNAPSLHHLRDVVVLPQLG 377
>gi|452004258|gb|EMD96714.1| hypothetical protein COCHEDRAFT_106396 [Cochliobolus heterostrophus
C5]
Length = 931
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 183/667 (27%), Positives = 297/667 (44%), Gaps = 129/667 (19%)
Query: 361 EKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR--------- 411
+ ++D + + + LN K +A + +TPT DV++R
Sbjct: 107 DNVEDCKHMELASRDLNGKQKKHHHLALTYKATVTPTGILLRGPDWDVSNRVLRKYSTRT 166
Query: 412 --FLRVTFMDE-GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
F+RV F DE GL + +S + + V++R +++L +G ++ G
Sbjct: 167 EYFMRVFFADEDGLSVFH-----------------DSRASQNQVYERFRNVLQNGISVAG 209
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVG-ETSVLDIKNW---MGEFTAKNI-AKYAARMGLCF 523
R + FL FS LR+H AWF + + S++ +N +G+F+ + AK AAR+G F
Sbjct: 210 RTFQFLGFSHASLRNHQAWFMAPFEMDGSLVRARNVIQDLGDFSHIHCSAKCAARIGQAF 269
Query: 524 SSTHATVEIPPTEVDHELP-DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP----- 577
S T +V +P T E+ D++RN FSDG G I+ +L V + L PP
Sbjct: 270 SDTIFSVPVPETAYVTEVKDDVERNSRTFSDGCGTISLELLRTVWRAL-----PPERRQQ 324
Query: 578 -PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT--SLEICSWTRFQP--GF 632
P+ QIRY G KGV++ + D ++ +R SM K+ + T LE+C ++P F
Sbjct: 325 RPTVLQIRYRGAKGVLSLDASLSDQ-QLHVRKSMTKYIAKETWRDLELCG-AAYKPLSVF 382
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLML--VASDVAFEVLTASC--AEQGNTAA 688
LN Q I +L L V E F VQ + L L+ + +F + SC A+
Sbjct: 383 LNHQFIKILEDLGVPAENFLHVQDEAVNTLKLITEHPLNAASFLAYSHSCIFAKVPQLFE 442
Query: 689 IMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHG------------ 736
+M G + L ++ E+ + + + +E + +G
Sbjct: 443 MMHRIGLPFHADRFLTDIV--EVAAMSSLRSLKYRARIPIEKGYLLYGVMDETNTLKYGE 500
Query: 737 --------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVF 785
+ + K+ ++ +++ + P L PGD+++++AVD + L L +C+VF
Sbjct: 501 VYIATQDHDKTGKLKRSILVGNQIIVTRAPALHPGDIQLVDAVDVTDDSPLRALHNCIVF 560
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIP-----PSKKSCPPME--CTPAEAKPLTC 838
Q+G R ++ SG DLDGDL+++ +D+ LIP P++ P + P EA +
Sbjct: 561 SQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAYTVEPAEYDKAPAKDLGRPVEANDIVG 620
Query: 839 ----HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
++ LGQI N H + AD G +C+ LAKLA+ AVD KTG M
Sbjct: 621 FFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDCLTLAKLASDAVDFSKTGVPADMSRIP 680
Query: 895 KPKKY--PDFM--------------EIEEY---------------------QTYKSNKIL 917
K + PDFM E+ E + Y+S+KIL
Sbjct: 681 KGIDHFRPDFMAPGSHLVINELGAAELAELEEDDIDDPDSISVLDADKGRIRYYRSDKIL 740
Query: 918 GRLYRQI 924
G LYR I
Sbjct: 741 GILYRAI 747
>gi|159123458|gb|EDP48577.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 809
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 201/400 (50%), Gaps = 44/400 (11%)
Query: 459 ILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAA 517
+L +G L G YSF SS+QLR + + + + V ++ +G+F+ K +AK A
Sbjct: 108 LLKEGIILNGVLYSFYGHSSSQLRSRACYLL-RGSKNEVAELVESLGDFSGIKTVAKKAK 166
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLDG 574
R+GL FSS HA +++P + + DI+ +GY F+DG G + A ++Q I+ +
Sbjct: 167 RIGLLFSSCHALMKVPDGTYE-VIDDIEFSGYNFTDGCGLVGAKTARVLSQKLSIISRNT 225
Query: 575 SPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEICSWTRFQP--- 630
P+ YQIR+ GYKGVV P R SM+KF S + +++ QP
Sbjct: 226 RYHPAVYQIRFKGYKGVVMLEPQMPPQYWFQFRRSMRKFSGIGDRSFAVVEYSKTQPATP 285
Query: 631 --------------GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
G+LN ++I LL TL VS E+F Q +L + VAF L
Sbjct: 286 LFYSLPLMVQPYTYGYLNDEVILLLHTLGVSAEVFLRKQKEHFQRLQESVTEPTVAFTFL 345
Query: 677 TASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYE----LGELKECQCFIQVSESSL---- 728
+ + + A ++ G + + L+ ++ E L + ++ +C I V ES L
Sbjct: 346 CS--LNRFDLAEKLVLHGIE-RVSGALRSLVADEHKKMLNKREDQKCRILVPESRLVFGV 402
Query: 729 ---------ENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
CF + + ++ VV+ +NPCL PGD+R L+AVDRPEL HL
Sbjct: 403 CDPRGVLQEGECFLRVTDDMNGGRPRTIVGCEVVVTRNPCLHPGDLRKLKAVDRPELSHL 462
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
DC+VF KG+RP ++ SG DLDGD ++V WD +L+P +
Sbjct: 463 RDCIVFAVKGERPAADQMSGGDLDGDTFFVCWDPDLVPST 502
>gi|340517754|gb|EGR47997.1| predicted protein [Trichoderma reesei QM6a]
Length = 1250
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 189/646 (29%), Positives = 271/646 (41%), Gaps = 129/646 (19%)
Query: 379 GPKNIDDIAEVRRLVITPTKAYWFLESKDV-------------ADRFLRVTFMDEGLQTM 425
GP D V + V+TPT+ L+ D +D LRV F DE Q
Sbjct: 422 GPPIPDSQTWVLKAVVTPTRI--MLQGPDAENNNRVLRMFPHHSDYLLRVIFSDEDGQ-- 477
Query: 426 NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHS 485
D+ + +F R + +L DG + GR+Y FL FS + LR HS
Sbjct: 478 --------------DLALFPSVDNSAIFGRYRKVLKDGIQVAGRKYEFLGFSHSSLRSHS 523
Query: 486 AWFFSKVGETSVL----DIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHE 540
AWF + + L I N +G+F+ I AK AAR+G FS T V+I + +
Sbjct: 524 AWFCAPFIDNMQLHNNESIINSLGDFSEIRIPAKCAARIGQAFSETPYAVDILKCGIGIK 583
Query: 541 -LPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPA 597
+PD+K VFSDG G I+ D E+ + L + +P + Q+R G KG+++
Sbjct: 584 YIPDVKTADGSRVFSDGCGTISWDAIEEIWEHLPMTSTP--TCLQVRLGGIKGMLSLDSR 641
Query: 598 KDDGIRMSLRGSMKKFKSC-HTSLEICSWTRFQPGF-LNRQIITLLSTLNVSDEIFWTVQ 655
+ + SM KF S T L IC F LNRQII +L + + E F Q
Sbjct: 642 LKGKVICIRKESMMKFSSSDQTMLGICDTASKPLRFVLNRQIIKILEDMGTNAEWFIDQQ 701
Query: 656 --------------ASMASKLNLMLVASDVAFEVLTASCAEQG--------------NTA 687
+ ++ L LV + V L ++ G +T
Sbjct: 702 NKALDVLRNVTATAVNTSTFLEYQLVGTTVGLPKLIKYLSKIGVDYRRDNFMKTVVDHTI 761
Query: 688 AIMLSAGFKPQTEPHLQGMLTY----ELGELKECQCFIQVSESSLENCFSKHGSRFAETK 743
L P QG+ + E G L+E + ++ + + + K R +
Sbjct: 762 LEELRLLKHKARIPVDQGVTLFGIMDETGFLEEGEIYV-----TFDQQYDKVQGRVKHSL 816
Query: 744 KLQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGS 800
K +G V+I ++P L PGD++ + PE LH L +C+VF QKG R ++ SG
Sbjct: 817 K----DGLVLITRSPALHPGDIQPAQMRTPPEGHPLHDLKNCVVFSQKGTRDLPSQLSGG 872
Query: 801 DLDGDLYYVTWDENLIPP---SKKSCPPMECTPAE--------AKPLTCHVNHQNLGQIC 849
DLDGDLY + WD +IP + S P + P + A + LG I
Sbjct: 873 DLDGDLYNIFWDPRVIPKQFFTAASYPRVIPPPLDRAVTRDDIADFFVTFMETDILGMIA 932
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFME---- 904
N H V AD E G + CI LA+L +TAVD KTG VT+ K P+ PDFM
Sbjct: 933 NRHQVSADAKEEGTLHQECIKLAELHSTAVDYSKTGIPVTVQQLPKAPRMRPDFMAPAPP 992
Query: 905 --------------------------IEEYQTYKSNKILGRLYRQI 924
+ + + YKS KILG LYR +
Sbjct: 993 AHLYDRDEVDHIGDPDSDDDDEDGLGVSKPRYYKSLKILGELYRGV 1038
>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
Length = 3481
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 166/515 (32%), Positives = 247/515 (47%), Gaps = 62/515 (12%)
Query: 432 YYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR-RYSFLAFSSNQLRDHSAWFF- 489
+ + I ++ S+S + + K + L DG + G +Y FL +S++QLR ++ WF+
Sbjct: 1174 FLMVQITEETISDSIDYQPLISKLMLDKLIDGIAVAGYGQYHFLGYSNSQLRKNTCWFYC 1233
Query: 490 -----SKVGETSVLDIKNWMGEFTA--KNIAKYAARMGLCFSSTHATVEIPPTEVDHELP 542
S S+ D+K + T+ +Y + L F ST ++ IP + HE+P
Sbjct: 1234 PDAIDSLDDAPSLDDVKQILIGDTSIYTEPRQYLRSLSLVFPSTTPSLLIPAEHI-HEVP 1292
Query: 543 DI--KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD 600
D+ G +FSDGIG I +A++V + L A+QIR AGYKGVV P DD
Sbjct: 1293 DVVSANTGQIFSDGIGYIGKRVALQVIEFASLPEET--CAFQIRIAGYKGVVTIHPTIDD 1350
Query: 601 GIRMSLRGSMKKFKSCHTS-----LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQ 655
GI LR SMKKF++ T LEI S P LNRQ+I LLS L V D+ F +Q
Sbjct: 1351 GIY--LRPSMKKFQADLTQQHNCILEIISINGDNPCHLNRQVINLLSGLGVPDQYFLRLQ 1408
Query: 656 ASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM--LTYE--L 711
K LM +A + + C+E + + ++P ++ + L Y+ +
Sbjct: 1409 -----KEALMDLADLLHNPAESIRCSEDLPWLRTIEKEDLR--SDPMIRSLVHLVYQKSI 1461
Query: 712 GELKECQCFIQVSESSL------ENCFSKHGSRFA---ETKKLQ--VINGFVVIAKNPCL 760
E + +CFI ++ E + G + TK Q VI G V + KNPCL
Sbjct: 1462 AEYSD-KCFIPIANGKTIIGVLDETGLLEAGQVYINIYNTKNGQSMVIQGAVAVCKNPCL 1520
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---- 816
PGDVRIL+ D L HL + +VF +GD P + SGSDLDGD Y++ +D +I
Sbjct: 1521 HPGDVRILQGTDIELLSHLKNVVVFSARGDNPDFKKCSGSDLDGDRYFICYDPEVISTVR 1580
Query: 817 ---------PPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDEN 867
P K P+ + A+ L ++ LG+I +H+ +DR D
Sbjct: 1581 QYEDYHYEDPIKVKQTIPINQSTILAQYLKS-IDKGTLGKIALSHLAVSDR--LTPLDPL 1637
Query: 868 CILLAKLAATAVDSPKTGKIVTMPSH--LKPKKYP 900
I L+ + VDSPKTG V+ H K +K+P
Sbjct: 1638 AIALSIQHSIEVDSPKTGVHVSAYYHCAYKDQKHP 1672
>gi|340505285|gb|EGR31631.1| RNA-dependent rna polymerase, putative [Ichthyophthirius
multifiliis]
Length = 592
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 204/436 (46%), Gaps = 85/436 (19%)
Query: 562 LAMEVAQILKLDGSP--------PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF 613
L ME+ Q K+ + P A+++ G KGV+ + + LR SMKKF
Sbjct: 100 LQMELVQFQKIQSNKYARNLIQIQPHAFKLDLLGSKGVLMQMKFIEKNT-IILRNSMKKF 158
Query: 614 KSCHTS----LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL------- 662
+ ++I +++ G+LNRQ+I LL +L + D+IF +Q L
Sbjct: 159 DVLNEGDKLYIDILDMNKYRNGYLNRQVIILLKSLGIQDKIFRDLQNEFLQMLEKEGFKD 218
Query: 663 ----NLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQ----TEPHLQGMLT------ 708
NL V + E L E+ + ++L + Q +P + G+L
Sbjct: 219 ANFYNLFNVDFE---ENLVEKNIEKLDRITVLLKKMYDEQLYRKKDPFIDGVLNSLKYRG 275
Query: 709 -YELGELKECQCFIQVS--------------ESSLENCFSKHGSRFAETKKLQVINGFVV 753
Y L K+C +++ S E+ + +SK G F E I G V+
Sbjct: 276 YYILK--KKCNIYVEKSARLLGILDEFNLLEENQVYANYSKDGELFQE------IEGKVI 327
Query: 754 IAKNPCLRPGDVRILEAVDRPE------LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
+ KNPCL PGD+RIL AV L + L+FP+KG P + +GSDLDGD Y
Sbjct: 328 VVKNPCLHPGDIRILNAVSTKNDKKYNFLKEYKNVLIFPKKGKIPIAAQIAGSDLDGDQY 387
Query: 808 YVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-----------------NLGQICN 850
++ WDE LIP K P + K + ++ +Q NLG+I N
Sbjct: 388 FICWDERLIP--NKEVIPFDYDQENNKNIQQNLQNQINDQQMLDFFIDFINCENLGKIDN 445
Query: 851 AHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQT 910
+H+ AD+S + A D CI LAKL A AVD KTG +P +L+ K++PD+ME +
Sbjct: 446 SHLAIADQSSFFALDFRCIQLAKLHAQAVDYAKTGVSPYVPLNLQSKQFPDYMEKSDKNQ 505
Query: 911 YKSNKILGRLYRQIKG 926
Y+S +LG LYRQ+KG
Sbjct: 506 YESKSVLGYLYRQVKG 521
>gi|358378399|gb|EHK16081.1| hypothetical protein TRIVIDRAFT_10390, partial [Trichoderma virens
Gv29-8]
Length = 1247
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 192/645 (29%), Positives = 285/645 (44%), Gaps = 126/645 (19%)
Query: 379 GPKNIDDIAEVRRLVITPTKAYWFL---ESKDV--------ADRFLRVTFMDEGLQTMNA 427
GP+ + A V ++++TPT+ E+K+ +D F RV F DE Q +
Sbjct: 416 GPQLPEHQAWVLKVMVTPTRIMLHGPDGENKNRVLRMFPQHSDYFARVIFGDEDGQDLA- 474
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
+ P V + + +F+R + I+ DG ++ GR++ FL FS + LR HSAW
Sbjct: 475 ------LLPSVNN---------SAIFERYRKIMKDGIHVAGRKFEFLGFSHSSLRSHSAW 519
Query: 488 FFSKVGETSVLD----IKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHE-L 541
F + + L I +G+F+ I AK AAR+G FS T V+I + + +
Sbjct: 520 FCAPFVDKMELQNNDSIIRSLGDFSDIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYI 579
Query: 542 PDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD 599
PD+K VFSDG+G I+ D E+ L ++ S P + +Q+R G KG+++
Sbjct: 580 PDVKTADGKRVFSDGVGTISWDAMEEIWDRLPMNNSAP-TCFQVRLGGIKGMLSLDSRLK 638
Query: 600 DGIRMSLRGSMKKFKSC-HTSLEICSWTRFQPG--FLNRQIITLLSTLNVSDEIFW---- 652
+ + SM KF S T+L IC T +P LNRQ I +L + + E F
Sbjct: 639 GKVICIRKESMMKFPSSDQTTLGICD-TASKPLRLVLNRQTIKILEDMGTNFEWFIDQQN 697
Query: 653 ---------TVQASMASK-LNLMLVASDVAFEVLTASCAEQG--------------NTAA 688
T AS S L LV ++V F L + G +T
Sbjct: 698 KALDVLRNVTASASNTSTFLESQLVGTNVGFPKLIKYLNKVGIDYRRDKFMKKVVDHTIL 757
Query: 689 IMLSAGFKPQTEPHLQGMLTY----ELGELKECQCFIQVSESSLENCFSKHGSRFAETKK 744
L P QG+ + E G L+E Q ++ + ++ + K R + K
Sbjct: 758 RELRLLKHKARIPVDQGVTLFGIMDETGFLEEGQIYV-----TFDSSYDKAQGRVKGSLK 812
Query: 745 LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD---CLVFPQKGDRPHTNEASGSD 801
+GFV+I ++P L PGD+++ + + P H L D C+VF QKG R ++ SG D
Sbjct: 813 ----DGFVLITRSPALHPGDIQLAQVMTPPHGHPLRDLRNCVVFSQKGSRDLPSQLSGGD 868
Query: 802 LDGDLYYVTWDENLIPPS--KKSCPPMECTPAEAKPLTCH---------VNHQNLGQICN 850
LDGDLY + WD +IP S + P PA + +T + LG I N
Sbjct: 869 LDGDLYSIFWDPFVIPKSYFTPADYPRVTPPALDRVVTREDIADFFVKFMETDILGMIAN 928
Query: 851 AHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDF------- 902
H + AD + G D+ C LA+L +TAVD KTG VT+ K P+ PDF
Sbjct: 929 RHQIFADFKDEGTVDQVCTNLAELHSTAVDYSKTGIPVTIQQLPKAPRLRPDFLAPAPPT 988
Query: 903 -----------------------MEIEEYQTYKSNKILGRLYRQI 924
M + YKS KILG LYR +
Sbjct: 989 RLYDRGEVSHIGDPESDEDDEDGMGASKKGYYKSQKILGELYRGV 1033
>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
Length = 1721
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 222/476 (46%), Gaps = 51/476 (10%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAAR 518
L G ++ G Y+F S++QL+ S + + E I++ +G+FT K + K A R
Sbjct: 123 LRAGISINGVHYNFYGHSNSQLKSRSCFLLAATKEGISRQIES-LGDFTKMKTVGKKAKR 181
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLDGS 575
+GL FSS + I P + ++PD++ Y+F+DG G I P LA E+++ I+ D
Sbjct: 182 IGLLFSSAKTAMTINPDRCE-DIPDVETADYIFTDGCGLIAPSLAQELSRRTRIIFRDTR 240
Query: 576 PPPSAYQIRYAGYKGVVAC-WPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLN 634
PS +QIRY GYKGVV K + R SMKKF S+ F GFLN
Sbjct: 241 YTPSVFQIRYRGYKGVVTVDTRMKKQKALLKFRKSMKKFSGGDDH----SFAPFSYGFLN 296
Query: 635 RQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAG 694
+ I LL L +S E Q L AF +L+ S + + A +L G
Sbjct: 297 DETIILLHALGISQETLLAKQRRHFDLLRNAKTDHRDAFRLLSYS--NRPDLAERVLLDG 354
Query: 695 ---FKPQ----TEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV 747
KPQ L+ ML + G+ C+ F+Q S C + R E
Sbjct: 355 SDSIKPQINSIVNAELKKMLNKKDGQ--RCRIFVQKSRLLFGVCDAWDVLREGEVAVKVT 412
Query: 748 I----------NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
+ N V + +NPCL PGD + + V+RPEL HL DC+VF +G RP +
Sbjct: 413 MEETGVPHALKNTEVTVIRNPCLHPGDWQKFKVVERPELAHLTDCIVFSTRGKRPAADMM 472
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCP---PMECTPAEAKPLT--------CHVNHQNLG 846
SG DLDGD ++V WD +LI PS S P P P +P+T N+ +LG
Sbjct: 473 SGGDLDGDTFFVCWDPDLI-PSTISTPALYPGGRDPITFRPITDDDRLVYFAKYNNASLG 531
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPD 901
++ N ++ A + G C L +L + VD G + +P L+ P K PD
Sbjct: 532 KVKNLYLDWARAT--GPMSAQCQELNRLFSQCVD----GNRIRIPEKLQSPPKSPD 581
>gi|145547505|ref|XP_001459434.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74830373|emb|CAI39057.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
gi|124427259|emb|CAK92037.1| unnamed protein product [Paramecium tetraurelia]
Length = 1331
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 182/631 (28%), Positives = 297/631 (47%), Gaps = 132/631 (20%)
Query: 386 IAEVRRLVITPTKAYWFL----ESKDVA-------DRFLRVTFMDEGLQTMNAN--VLSY 432
+A ++R+ +TP+ + L E+ ++ D F+R+ F DE L+T++ + + Y
Sbjct: 510 VAMIKRVSLTPSGYIFNLKLPEETSEIIRQYYNQLDNFIRLHFEDENLETIHGHHYITEY 569
Query: 433 YVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-K 491
Y KS LS+G +L G ++ L +S++QLR S W F+
Sbjct: 570 YF----------------------KSKLSNGLHLLGEQFRLLTWSASQLRGGSCWIFNYN 607
Query: 492 VGETSVLDIKNWMGEFTAKN---IAKYAARMGLCFSSTHATVEIPPTEVDHELPD-IKRN 547
+ S + + +G F N +AK AAR+G FSS+ ++++ V ++PD + N
Sbjct: 608 RAQISRQNFIDSIGNFNTLNMDQVAKNAARLGQNFSSS-KSIDLRQIIVKTQVPDKVGDN 666
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLD-GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSL 606
G +++DGIGKI+ +L ++++++ + SA Q+RY G KGV+ D + L
Sbjct: 667 GKLYTDGIGKISRNLI----EMIRVEMNNHTISAIQVRYHGAKGVLLLNDDLPDNT-IEL 721
Query: 607 RGSMKKFK-------SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMA 659
R SM KF + T + + + +F+ G+LNRQII LL TL + +E+F +Q
Sbjct: 722 RKSMIKFNPTLMNDGNYKTMISLLDYNKFRGGYLNRQIIILLVTLGIQEEVFMQLQREYL 781
Query: 660 SKL-NLMLVASDVAFEVLTASCAE-QG-----NTAAIMLSAGFKPQTEPHLQGMLTYELG 712
K+ NL V S + L E QG + +M++A +++ + L
Sbjct: 782 HKIANLSAVDSSIYNHFLVDYNGELQGLPSIIDNIRMMINANLNENNNHYIKRV----LD 837
Query: 713 ELKECQCFIQVSESSLENCFSKHGSRFAET-----------------KKLQV----INGF 751
LK + +Q+ S N +R + L V I G
Sbjct: 838 RLKR-RGLMQLRTKS--NILMDQAARVLGVVDDYDILDQGEVVCIVKQSLDVNHKYITGE 894
Query: 752 VVIAKNPCLRPGDVRILEAVDRPEL----------HHLCDCLVFPQKGDRPHTNEASGSD 801
+++ +NPCL PGD+R + A+ E+ +C+VFP KG+ + G
Sbjct: 895 IIVVRNPCLHPGDIRKVRALSENEILSRYNMKNPFAEYYNCIVFPCKGNSIPADCGGGD- 953
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP-------------------------- 835
LDGD+Y+V+WD +IP K + PM E KP
Sbjct: 954 LDGDIYFVSWDPKVIP--KTTEYPMN-YDEEKKPAVVVSKQIQAQGYISAEDFFQENKMI 1010
Query: 836 --LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
L ++N LG+I N+H+ AD S A D CI LA+L + AVD K G V +P++
Sbjct: 1011 EFLLEYLNFDVLGKIDNSHLAIADGSPDYAKDPKCIRLAELHSAAVDYVKHGNKVEIPNN 1070
Query: 894 LKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
L K++PDFME ++ Y+S ILG+LYR++
Sbjct: 1071 LVTKRWPDFME-KDSMVYESTSILGKLYREV 1100
>gi|239614149|gb|EEQ91136.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1701
Score = 189 bits (480), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 148/519 (28%), Positives = 233/519 (44%), Gaps = 73/519 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + + + M +N++ + ++F L + L+H+ K +D E
Sbjct: 810 LPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTIYYDPMEIF 869
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRF 412
I PK + +R +TP+ + + S D ADRF
Sbjct: 870 N------IPFPKGATNGRIPGHCCYIRSADVTPSTICYDIPSVDTSNRVFRYHREHADRF 923
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
LRV F DE Y+ I + + NS + V+ RV L G + RRY
Sbjct: 924 LRVRFCDEK-----------YIGKIYPNNSGNSQCMEK-VYARVLRTLQHGITIGDRRYE 971
Query: 473 FLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVE 531
FLAF ++QLR+H A+FF+ + + +I+ MG+ + +AKYAAR+G CFS+T A
Sbjct: 972 FLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQCFSTTRAVTS 1031
Query: 532 IPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL--KLDGSPPPSAYQIRYAGYK 589
P ++ ++ DI+RNGYVFSDG+G+++ L + L K PPS +Q R G K
Sbjct: 1032 C-PVQIK-KIDDIERNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEPPSVFQFRLGGCK 1089
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
G++A P + +R S KF + H LEI ++ F LNRQ+I +LS L DE
Sbjct: 1090 GILAVSPEARQR-EVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLILILSALGTPDE 1148
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGML 707
+F + M + L + D A +L T + M+ GF+ EP + +L
Sbjct: 1149 VFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQGSREPFVSSLL 1208
Query: 708 ----TYELGELKECQCFIQVSESS-LENCFS--------------KHGSRFAET------ 742
T+++ LKE + I + E + L C K S + E
Sbjct: 1209 ELWRTWQIKYLKE-KAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANSTYQERVDCLPE 1267
Query: 743 ----------KKLQVINGFVVIAKNPCLRPGDVRILEAV 771
K VI G ++A+NP L PGD+R+++A+
Sbjct: 1268 IFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAI 1306
>gi|67524519|ref|XP_660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|40743829|gb|EAA63015.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|259486372|tpe|CBF84157.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 1203
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 196/750 (26%), Positives = 318/750 (42%), Gaps = 132/750 (17%)
Query: 304 VSFEIMFLVNAVMHKGILNQH---QLSDSFFDLLRCQP----REVIVTALKHIYS---YK 353
+ F I+F + A+++ G L + +L+ + + + R + V ++K +++ +
Sbjct: 286 LPFGILFQLQALVYNGYLPPNIVLRLTRKLASITKTRKVQGRRPISVNSMKRLFNLIDWP 345
Query: 354 RPVFDAYE-KLKDVQECLIKNPK-LNEGPKNID-------DIAEVRRLVITPTKAYWFLE 404
P D E +K + E + N K L EG + +A + R+V+TP++
Sbjct: 346 SPFGDPEEFSIKRLLEVITGNDKDLGEGASEAEALFQPAPHLAHIHRVVVTPSRITLHGP 405
Query: 405 SKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVF 453
+ +R F+RV F DE + DI N + +F
Sbjct: 406 ETEPLNRILRRFPNHHEYFIRVQFCDENGE----------------DIYFNPRINNSLIF 449
Query: 454 KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGE-----TSVLDIKNWMGEFT 508
R K++ ++GF + GR Y+FL FS + LR SAWF + + S I +G F+
Sbjct: 450 ARFKNVFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFS 509
Query: 509 -AKNIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDIKRNGYVFSDGIGKITPDLAMEV 566
+ A+ AAR+G FS T V + + +PD++ G VFSDG+G I+ +
Sbjct: 510 EITSPARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQVGGRVFSDGVGTISAKAVDII 569
Query: 567 AQILKLDGSPP----PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS-CHTSLE 621
+L PP P+ +QIR G KG+++ P + G ++ +R SM KF++ ++E
Sbjct: 570 HGVL-----PPRNGAPTCFQIRLGGAKGMLSLDP-RLRGSKICIRPSMTKFQTDDQVNVE 623
Query: 622 IC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL---- 676
IC S ++ P FLNRQ+I +L + V E F T+Q +L + +
Sbjct: 624 ICGSGSKPIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNTATFVKGQS 683
Query: 677 TASCAEQGNTAAIMLSAGFKPQTEPHL----QGMLTYELGELKE-----CQCFIQVSESS 727
A C + + + + P L + M+ EL LK I +
Sbjct: 684 VADCVKLYRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGITLYGVM 743
Query: 728 LENCFSKHGSRFAETKKLQVI-----NGFVVIAKNPCLRPGDVRILEAVDRPELHHLC-- 780
E F F + + + N +++ ++P L GD++ V P+ H L
Sbjct: 744 DETGFLNENEVFVTYQAMDRLAAPPQNCRLLVTRSPALHNGDIQYPYNVVPPKGHPLQQQ 803
Query: 781 -DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN------LIPPSKKSCPPMECTPA-- 831
+C+VF QKG R ++ SG DLDGDLY + WD P + PP++
Sbjct: 804 RNCIVFSQKGTRDLPSQLSGGDLDGDLYNIIWDPAAAPKRVFTPANYPRNPPLDIKRVVE 863
Query: 832 ---EAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV 888
A + LG I H++ AD+ E G +C LA+L +TAVD KTG V
Sbjct: 864 REDMANFFVEFMQSDRLGVIATKHMILADQMELGTSHSDCKKLAQLHSTAVDFSKTGIPV 923
Query: 889 TM----------PSHLKP-------------------KKYP----DFMEIEEYQTYKSNK 915
+ P L P YP DF + +Y Y+S K
Sbjct: 924 RLKEMPFVNRSRPDFLAPGPLAKIHDRQNIQLEARYVHPYPDDDIDFSPVHKY--YRSEK 981
Query: 916 ILGRLYRQIKGAYDENISVSSEVDINPVDI 945
ILG+LYR I + + V+ NP +
Sbjct: 982 ILGKLYRAINEHEIWTKDIHTTVNSNPTAV 1011
>gi|358366477|dbj|GAA83098.1| rna-dependent rna polymerase [Aspergillus kawachii IFO 4308]
Length = 1212
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 181/654 (27%), Positives = 296/654 (45%), Gaps = 117/654 (17%)
Query: 379 GPKNIDDIAEVRRLVITPTKAYWF---LESKDVA--------DRFLRVTFMDEGLQTMNA 427
GP +++ + ++++TPT+ LE ++ D F+RV F DE Q ++
Sbjct: 411 GPS--ENLTPIHKVMVTPTRVTLHGPELEPRNRILRRFPKHHDFFIRVQFCDENGQDLHF 468
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
N +Y VF R KS+L+ G + GR YSFL +S + LR H+ W
Sbjct: 469 NSRVHY----------------DDVFSRFKSVLTRGIQIAGRTYSFLGWSHSSLRSHAVW 512
Query: 488 FFSKVGETSV-----LDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVD-HE 540
F S + S I +G+F+ ++ A+ AAR+G F+ TH + + +++ E
Sbjct: 513 FSSPFVDESGQFQTHFSIIKALGDFSKIQSPARCAARIGQAFTDTHYAISLSEYDINVSE 572
Query: 541 LPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAK 598
+ D+ N VFSDG+G ++ D+A + + + P+ +Q+R G KG++A +
Sbjct: 573 VADVTSNDGKRVFSDGVGTLSWDVAETIWHHIP-EKKGLPTCFQVRLGGAKGMLAV-DGR 630
Query: 599 DDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGF-LNRQIITLLSTLNVSDEIFWTVQAS 657
G ++++R SM KF+ LEIC G LNRQ+I +L + DE F T+Q +
Sbjct: 631 LSGSQVNIRPSMIKFQGDMKDLEICDMAAKPMGLVLNRQMIKILEDMGTPDEWFITLQEA 690
Query: 658 MASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKP--------QTEPHLQGMLTY 709
+KL + AS EV +Q +I L F+ + EP ++ ++
Sbjct: 691 ALTKLR-SVTASAHNSEVF---IKKQAVGDSIGLYRLFRHCHLRDLDYKKEPFIRSVV-- 744
Query: 710 ELGELKECQCFIQVSESSLENCFSKHG----SRFAETKKLQVI-------------NGFV 752
E LKE + + + + G + E +++ V +G V
Sbjct: 745 EAVVLKELRLLKHKARIPVFKGITLFGVMDETGLLEAEQVYVTYEPVEGRHAPPPNSGTV 804
Query: 753 VIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
++ ++P L GD++ + V P+ H L +C+VF KG R ++ SG DLDGD++ V
Sbjct: 805 LVTRSPALHDGDIQYAQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNV 864
Query: 810 TWDENLIP-----PSK--KSCPPMECTPAE----AKPLTCHVNHQNLGQICNAHVVHADR 858
WD + P P+ + P P E A+ + +LG I H++ AD+
Sbjct: 865 IWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGMIATRHMIMADQ 924
Query: 859 SEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM-------------- 903
E G C LA+L +TAVD KTG V + K + PDFM
Sbjct: 925 EEEGTSHPVCRQLAQLHSTAVDFSKTGIPVQLGDIPKGNPFRPDFMAPGPVARIHNKSEI 984
Query: 904 EIEEY----------------QTYKSNKILGRLYRQIKGAYDENISVSSEVDIN 941
E+EEY + Y+S+KILG+LYR + + + S+V N
Sbjct: 985 ELEEYVIQTAYDEDNDLEPFHRYYRSDKILGKLYRGVDERHIWQKDIQSKVQPN 1038
>gi|308458494|ref|XP_003091586.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
gi|308255699|gb|EFO99651.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
Length = 1634
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 222/878 (25%), Positives = 363/878 (41%), Gaps = 204/878 (23%)
Query: 388 EVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAP 436
+VR++++TPT+ + K +A+R +R T D+ LQ M N+L
Sbjct: 446 KVRKVILTPTRKIYLAPEKIMANRAIRGACHDGTRIIRATLRDDNLQKMRFNLL----GN 501
Query: 437 IVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS 496
+ +IT L DGF + R + +LA S++Q+R+ A+F +
Sbjct: 502 LQGEITLGH--------------LRDGFGIMERAFGYLASSNSQMREGGAYFMERYDAEQ 547
Query: 497 VLDIK--------------------NWMGEFT-AKNIAKYAARMGLCFSSTHA--TVEIP 533
+ + K N +G+F +I K AR+G CF+ V I
Sbjct: 548 LAEYKEEHPGEPVPHSFKPMIKEYWNVLGKFVDTGSIPKALARLGQCFTQARPIDNVSIS 607
Query: 534 PTEVDHELPD------IKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAG 587
PT+ +PD + Y+++DG+G I+ LA ++ L + P A+Q R+ G
Sbjct: 608 PTDYKM-IPDAIGGKNTEGKPYMYTDGVGCISAGLAEQIFGSLGIKHVP--CAFQFRFRG 664
Query: 588 YKGVVACWPAKDD--------GIRMS-----LRGSMKKFKSCHT--SLEICSWTRFQPGF 632
+KG++A P D G+R R S KF+SC +E+ W+ P
Sbjct: 665 FKGMLAIDPNIDHTANHWESLGLRYHRIKCLFRKSQLKFESCQEDEQMEMVKWSSPTPVT 724
Query: 633 LNRQIITLL------STLNVSDEIFWTVQASMASKLN---LMLVASDVAFEVLTASCAEQ 683
LN+ I +L +L + V+ ++ +++ +V + EVL +
Sbjct: 725 LNKPFINILDQVSGLQSLECHKRVSGRVEELLSMEMDNYSAAVVNEEKCREVLEG-MPRR 783
Query: 684 GNTAAIMLSAGFKPQTEPHLQGM------------------------------LTYELGE 713
+ A++ GF TEP + + +T E G+
Sbjct: 784 IHFASMERKNGFVLSTEPFFRSLVKATIDSAMSRLLRKLQIPIPGNLGRSMFGITDETGQ 843
Query: 714 LKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDR 773
L+ Q F++ +E N KH SR KK + G V++ K P L GDVR+ EAVD
Sbjct: 844 LQYGQVFVRYTE----NVNEKHPSRH---KKTITLTGKVLVTKFPSLCEGDVRMYEAVDI 896
Query: 774 PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK------SCPPME 827
PELHHL D +VFPQ G R +E +GSDLDGD Y V WD L + S P +
Sbjct: 897 PELHHLQDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDPQLFFERNQKAFEYSSEKPDQ 956
Query: 828 CTPAEAKP------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDS 881
AE T + +++G H+ +D ++G + C +A A+D
Sbjct: 957 HFAAEEMDDGFHWFYTEYAKQEDVGVTSINHLHQSD--QFGINSDVCRSIAIKNGMALDY 1014
Query: 882 PKTG----KIVTMPSHLKP----KKYPDFMEIEEYQ---TYKSNKILGRLYRQIKGAYDE 930
K+G + ++ S P ++ PD+ Y +Y+S+++LG+LYR+++ D
Sbjct: 1015 AKSGVAPPPLTSVWSSEGPPERSERRPDYAN-NRYNGSPSYQSSRLLGQLYRELRCVND- 1072
Query: 931 NISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV------- 983
V SE D V + D L G +F A Y+ ++ ++ Y V
Sbjct: 1073 ---VCSE-DSKQVPVAIDPLLTWQGWEEFVDGAHLHMTRYNAEVRSIMDTYGVATEAEIF 1128
Query: 984 --------NRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDF---- 1031
NR + M Y++ E Q + + +R++F + F ++ +
Sbjct: 1129 SGCYREIRNRHSEKEQDDMSIYDTESVIETQ--MTRVFRKYREQFFEEFAPGDNGYMRLT 1186
Query: 1032 -----ELSDNEKNVLYE----------QKASAWYQVTYHREWVKKSLDLLEQGSARSVVL 1076
+ EK+VL KA A+Y+ Y + S+D
Sbjct: 1187 EVENPRDDEEEKDVLRRVCRQPTGRMMAKAVAYYRDCY--TAAQNSVD----------CR 1234
Query: 1077 LSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVA 1114
LSFAWIA D L ++ K + N G PV L ++ A
Sbjct: 1235 LSFAWIAYDILNTVRGK--NLLNSGDMAPVTRLPQFQA 1270
>gi|290993029|ref|XP_002679136.1| predicted protein [Naegleria gruberi]
gi|284092751|gb|EFC46392.1| predicted protein [Naegleria gruberi]
Length = 464
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 232/481 (48%), Gaps = 80/481 (16%)
Query: 504 MGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDL 562
+G F+ + A+YAAR+G CFS T+ + E+ +PDI RN YVF+DG+G+I+ +
Sbjct: 1 LGNFSHIKVKARYAARIGQCFSHTYEGIS-KEYEI---IPDITRNNYVFTDGVGRISLEF 56
Query: 563 AMEVAQILKLDGSPP---PSAYQIRYAGYKGVVACWP--AKDDGIRMSLRGSMKKF-KSC 616
A+E+ + ++ + PSA+Q R G KGVV P + + L S +KF S
Sbjct: 57 AVELTKKFQISFAGKEYIPSAFQFRMGGLKGVVVVDPDIHLYSDLDLLLSKSQEKFIDSS 116
Query: 617 HTSLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV 675
+ E+ +++ R + LNRQ+I LLS+ VSD +F + ++ + V
Sbjct: 117 SSEFELITYSKRNRFASLNRQLIALLSSNKVSDSVFLQLLDRDLEEIKKLFNDKKYMRRV 176
Query: 676 LTAS-----------------CAEQGNTAAIMLSA---GFKPQTEPH----------LQG 705
L S Q + + ++ S F Q EP+ L G
Sbjct: 177 LRKSQDNIVGKNMKKVASLNYLDSQYDFSKVVQSGEDIKFFYQIEPNGRIILDKALLLMG 236
Query: 706 MLTYELGELKECQCFIQVSE-----SSL--ENCFSKHGSRFAETKKLQVINGFVVIAKNP 758
++ + G L+E + FIQ+SE S L +NCF G+ ++G V I ++P
Sbjct: 237 VVDF-YGVLEEDEVFIQLSELENSDSDLYDDNCFVNGGT----------LSGTVAITRSP 285
Query: 759 CLRPGDVRILEAVDRPE----LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
CL PGD+R +AV PE L HL D +VF QKG+RP N+ SG D DGD + V WD
Sbjct: 286 CLHPGDIRKFKAVTDPEKISKLSHLRDVIVFSQKGNRPAANKMSGGDYDGDFFQVFWDPL 345
Query: 815 LIPPSKKSCPPM--ECTPAEAKP-----------LTCHVNHQNLGQICNAHVVHADRSEY 861
L+ + + PPM E P E K LT ++ + NLG + H+ H D+
Sbjct: 346 LV--NFEEYPPMNYEGLPPEEKHDGCDYRVIREFLTEYIINDNLGVVAFLHLEHYDKEGD 403
Query: 862 GAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFM-EIEEYQTYKSNKILGRL 920
G E C+ LAK + VD KTG +P+ L P +M + +TY S ++G +
Sbjct: 404 GLRSEPCLKLAKHHSYQVDYAKTGVRKPLPTELFSNSRPHYMPRVFGKKTYHSEDVIGSI 463
Query: 921 Y 921
Y
Sbjct: 464 Y 464
>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
Length = 3516
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 167/560 (29%), Positives = 259/560 (46%), Gaps = 82/560 (14%)
Query: 456 VKSILSDGFNLC-----GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA- 509
V ++L GF + R Y F S++QLR+ + + + + N GEF A
Sbjct: 108 VSAVLRSGFKVTVGKGQRRHYVFFGHSASQLRERTCILYDQGVLGPWERLVNGFGEFEAI 167
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ- 568
KN +K AAR+GL S+ +E+ E+DH DI+R+G+ F+DG G I+ A ++ Q
Sbjct: 168 KNPSKRAARIGLLLSTATKCLELDEKEIDH-TSDIERDGFTFTDGCGFISVACARKIMQD 226
Query: 569 -----ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK----SCHTS 619
+ P PS Q R G KGVV P+ +G+ +R S +KFK H
Sbjct: 227 KDISERYRHQDPPVPSVIQFRMKGCKGVVMTDPSLPNGV--CIRPSQEKFKWKLPPPHV- 283
Query: 620 LEICSWTRFQP---GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
+C QP G LN+Q I +LS L + DE+F + Q + +L+ + +VAF L
Sbjct: 284 FGVCDDGISQPYAFGQLNKQYIMMLSALGIKDEVFLSKQETYFKELDCLETDKEVAFRHL 343
Query: 677 TA----SCAEQ-------GNTAAIMLSAGFK-----PQTEPHLQGMLTYELGELKECQCF 720
A AE+ + + + GF+ P L +L + + +
Sbjct: 344 CARGYIGLAERLFSREGGPDNETLEILRGFRSRVRRPPKANKLHKLLNTKPEPARALKIP 403
Query: 721 IQVSES---------SLE--NCFSKHGSR-----FAETKKLQVINGFVVIAKNPCLRPGD 764
I+ S + +LE CF + R FA+TK V + K PC PGD
Sbjct: 404 IEKSRNVFGVCDPSGTLEPGQCFFQATVRGKMQVFADTK--------VAVVKCPCYHPGD 455
Query: 765 VRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP------- 817
R+L+ V+ + HL DC+VFP +G+RPH +E +GSDLDGD ++V WD +L+P
Sbjct: 456 FRVLQCVNVEDCRHLVDCVVFPVQGERPHADEIAGSDLDGDKFFVCWDPDLVPECEEAPL 515
Query: 818 --PSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLA 875
P ++ + + + + N + + ++ AD G C +AKL
Sbjct: 516 SYPGGEAAKKERVSIGDLISVFANYNSRTVSRLNELFNRWADVK--GVTSSECRKIAKLF 573
Query: 876 ATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGR--LYRQIKGAYDENIS 933
+TAVD+ KTGK V +P L K PD E + Y K+L R LY A D +++
Sbjct: 574 STAVDTAKTGKGVDIPPRL--LKPPDAQE----KRYVWQKMLERANLYLADSVAADSDLT 627
Query: 934 VSSEVDINPVDIHYDTDLEV 953
V + + D+ + D+ V
Sbjct: 628 VRVFEEADITDLLNNKDINV 647
>gi|171683804|ref|XP_001906844.1| hypothetical protein [Podospora anserina S mat+]
gi|170941862|emb|CAP67515.1| unnamed protein product [Podospora anserina S mat+]
Length = 1230
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 159/537 (29%), Positives = 247/537 (45%), Gaps = 86/537 (16%)
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
A+ F RV DE Q D+ N V+ R KSIL G + G
Sbjct: 474 ANFFFRVQLCDENGQ----------------DLLFNPTISLDTVYSRFKSILRKGIAVAG 517
Query: 469 RRYSFLAFSSNQLRDHSAWF---FSKVGETSVLD-IKNWMGEFTA-KNIAKYAARMGLCF 523
R+Y FL FS + LR HS WF F G+ + + I +G+F ++ A+ AAR+G F
Sbjct: 518 RQYKFLGFSHSSLRAHSLWFSAPFYHEGKLQIPEHIIEQLGDFAPIRSPARCAARIGQAF 577
Query: 524 SSTHATVEIPPTEVD-HELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
+ T +V + V E+PD++RNG VFSDG+G ++P A + + + P+ +Q
Sbjct: 578 TETPYSVSLVDNGVQTSEIPDVERNGRVFSDGVGVLSPQAAEAIHDAIP-ESKGEPTCFQ 636
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEICSW-TRFQPGFLNRQIITL 640
IR+AG KG+++ + +G ++ +R SMKKF+S +L+IC ++ P LNRQ+I +
Sbjct: 637 IRWAGAKGMLSL-DTELEGSQICIRPSMKKFESPDEANLDICDMASKPIPMMLNRQMIKI 695
Query: 641 LSTLNVSDEIFWTVQ--------------ASMASKLNLMLVASDVAFEVLTASCAEQG-- 684
L ++ F +Q +S AS L + + + L G
Sbjct: 696 LEDMDAPPWWFLELQRKEVNHLRAITRTVSSTASFLAMKDIGESIRLPHLLRQTEAMGVD 755
Query: 685 --------NTAAIMLSAGFK----PQTEPHLQGMLTY----ELGELKECQCFIQVSESSL 728
+ + L K P +G+ + E G L+E Q ++
Sbjct: 756 YHQDLFLRSVVEMALLKEIKLIKHKARIPVPKGITLFGVMDETGFLQEGQVYV------- 808
Query: 729 ENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD---CLVF 785
F R+ E + Q VVI ++P L PGD+++ V PE H L + C+VF
Sbjct: 809 --SFDTMQGRYHEPPECQK----VVITRSPALHPGDIQLAHHVIPPEGHPLLELRNCVVF 862
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLI-------PPSKKSCPPMEC-TPAEAKPL- 836
Q+GDR + SG DLDGD+Y + WDE ++ P P +E EA +
Sbjct: 863 SQRGDRDLPSMLSGGDLDGDIYNIIWDEAIVSQVRSFSPADYPRLPIVELGRKVEADDMI 922
Query: 837 ---TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
++ LG I H++ AD + G D +C+ LA+L + AVD KTG+ V +
Sbjct: 923 DFFVDFISQDCLGVIATRHMILADLAPQGTRDSDCVKLAELHSQAVDFSKTGRAVNL 979
>gi|407926953|gb|EKG19860.1| PhoH-like protein [Macrophomina phaseolina MS6]
Length = 1608
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 230/478 (48%), Gaps = 43/478 (8%)
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAK 514
+ +L G G Y+F S++QL+ S F+ I++ +G+F+ + K
Sbjct: 13 ISRLLKSGIRFNGVHYNFYGHSNSQLKTRSCVLFADTRAAIHRKIES-LGDFSKMTTVGK 71
Query: 515 YAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL-- 572
A R+GL FSS VE+ P E ++PD++ N Y+F+DG G I+P LA + Q + +
Sbjct: 72 KAKRIGLLFSSAEMGVELAP-ERCADIPDVEANDYIFTDGCGLISPHLARSLVQSVHIAF 130
Query: 573 -DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEICSWTR-FQ 629
+ PS +QIRY GYKGV++ P+ R SMKKF+ +L + +++ +
Sbjct: 131 RNVKYIPSVFQIRYRGYKGVLSLDPSMGSQCLAKFRSSMKKFRGGDDLTLSVVDYSKPYT 190
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI 689
G+LN +++ LL L V DE+F QA L + DV S + + A
Sbjct: 191 FGYLNDEVVLLLHALRVPDEVFLRKQAEHLHFLE-SVTRLDVRMCFRFLSYCNRLDLAER 249
Query: 690 MLSAGFKPQTEPHLQGMLTYE----LGELKECQCFIQVSESSL------ENCFSKHG--- 736
+L +G + E ++ M+ E L + E +C I + +S L K G
Sbjct: 250 LLISGVE-AVERDVRKMVGQEYERMLTKRNEQRCRILIPQSRLLFGVCDTKGLLKEGECV 308
Query: 737 ---SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPH 793
+ + + ++ V++ +NPCL PGD++ AV PEL HL DC+VFP G RP
Sbjct: 309 VRVTMDGDGQAQTIVGTQVLVTRNPCLHPGDLQKFRAVFHPELSHLVDCVVFPTAGKRPS 368
Query: 794 TNEASGSDLDGDLYYVTWDENLIP--PSKKSCPPMECTPAEAKPLT--------CHVNHQ 843
+ SG DLDGD ++V WD++LIP S+ + P KP+T ++
Sbjct: 369 ADLMSGGDLDGDKFFVCWDKDLIPTVASQPAEYPGPKAQIALKPITEDDRIDYFAQYSNM 428
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYP 900
+LG++ N + A +G C L +L + VD G + +P L+ P K P
Sbjct: 429 SLGRVKNLFLAWA--RLHGPLSPQCQQLNRLFSLCVD----GNRIKIPQDLQDPPKGP 480
>gi|409079686|gb|EKM80047.1| hypothetical protein AGABI1DRAFT_72859 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1258
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 199/758 (26%), Positives = 321/758 (42%), Gaps = 149/758 (19%)
Query: 308 IMFLVNAVMHKGILNQHQLSDSFFDLLR--CQ--PREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + +++H G LN +L +S +R CQ P+ + Y + D ++
Sbjct: 342 VGFHLESLLHNGRLNTSEL-ESLLPRVRKLCQEHPQRDHAYVDHFLRKYGEVLQDRGPRV 400
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAY----WFLESKDVADR-------F 412
+C + + PK DI R + TPT+ + +S + + F
Sbjct: 401 SPT-DCFEQVKRKYVPPKATLDIFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFF 459
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
+RV F DE N +++ SF V +RV +IL DGF + GR++
Sbjct: 460 IRVDFRDEDRLQYRWN----------REVDGASF-----VRERVGTILKDGFTIAGRQFE 504
Query: 473 FLAFSSNQLRDHSAWFF-------SKVGETSVLDIKNWMGEFTAKNI----AKYAARMGL 521
FLA+SS+ LR+H+ WF K G + I+ +G F ++ +KYAAR+
Sbjct: 505 FLAYSSSALREHAVWFMCPFEHHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQ 564
Query: 522 CFSSTHATVEIPPTEVDHELPDI--------KRNGYVFSDGIGKITPDLAMEVAQIL--- 570
F++T A+V I E + E+ DI K N Y+F+DG+G I+ L ++ L
Sbjct: 565 AFTATEASVSIKRDEWE-EIEDIKPPNFEDGKPNPYLFTDGVGSISKSLGDKIWAELCSN 623
Query: 571 ---KLDGSPPPSAYQIRYAGYKGVVACWPAKDD---GIRMSLRGSMKKFKSCH---TSLE 621
+ S PSAYQIR+ GYKGVVA D G M LR SM+KF + +E
Sbjct: 624 RRDHGENSIQPSAYQIRFLGYKGVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIE 683
Query: 622 IC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC 680
I ++ +LNR ++ LL L V+ + F T+Q +K + + D V++
Sbjct: 684 IAQAFAHPNRCYLNRPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSVIS--- 740
Query: 681 AEQGNTAAIMLSAGFKP---------QTEPHLQGMLTYELGELKECQCF----------- 720
E G + S K +P + T L +++E
Sbjct: 741 -EHGLGRSFRFSYLVKQLQGLGLEINSKDPDKLNVDTPFLKQVREVAMMDVMRDIKHSAR 799
Query: 721 IQVSESSLENCFSKHGSRFAET----------------------KKLQVINGFVVIAKNP 758
I V +S L + G + K + + G ++ ++P
Sbjct: 800 ILVPDSHLLVGIADEGPAYVSAGFENVYCLPPGFIYACVQESPDGKAEWLEGHCLVTRSP 859
Query: 759 CLRPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
GDV+ + A+ +P LC + LV +G+R + G D+DGDL+ V
Sbjct: 860 VAHIGDVQRVRAIGKPPQGKLCLFSHIKNALVMSSQGNRSLASCLGGGDVDGDLFQVIQY 919
Query: 813 ENLIPPSKKSCPPMECTPAEAKPLTC-------------HVNHQNLGQICNAHVVHADRS 859
E L+P + + PME K +T ++N LG + + ++ AD+S
Sbjct: 920 EPLLPMTYEL--PMEYESVGTKAITTECTVDDICDFVVEYINSDVLGLLSDRLLMIADQS 977
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY----PDFMEIE-----EYQT 910
+ G D++CI LA+L + AVD PK G V + P PD+ E E
Sbjct: 978 KLGMNDKDCIRLAELCSQAVDYPKNGIPVDLNKEKLPHTLIRCKPDWHAAEVVSPRETDY 1037
Query: 911 YKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYD 948
Y+S + LG LYR NIS++ + PV +++
Sbjct: 1038 YRSTRALGELYR--------NISLTEPEPMKPVSKNFE 1067
>gi|426198551|gb|EKV48477.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1258
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 199/758 (26%), Positives = 321/758 (42%), Gaps = 149/758 (19%)
Query: 308 IMFLVNAVMHKGILNQHQLSDSFFDLLR--CQ--PREVIVTALKHIYSYKRPVFDAYEKL 363
+ F + +++H G LN +L +S +R CQ P+ + Y + D ++
Sbjct: 342 VGFHLESLLHNGRLNTSEL-ESLLPRVRKLCQEHPQRDHAYVDHFLRKYGEVLQDRGPRV 400
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAY----WFLESKDVADR-------F 412
+C + + PK DI R + TPT+ + +S + + F
Sbjct: 401 SPT-DCFEQVKRRYIPPKATLDIFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFF 459
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYS 472
+RV F DE N +++ SF V +RV +IL DGF + GR++
Sbjct: 460 IRVDFRDEDRLQYRWN----------REVDGASF-----VRERVGTILKDGFTIAGRQFE 504
Query: 473 FLAFSSNQLRDHSAWFF-------SKVGETSVLDIKNWMGEFTAKNI----AKYAARMGL 521
FLA+SS+ LR+H+ WF K G + I+ +G F ++ +KYAAR+
Sbjct: 505 FLAYSSSALREHAVWFMCPFEHHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQ 564
Query: 522 CFSSTHATVEIPPTEVDHELPDI--------KRNGYVFSDGIGKITPDLAMEVAQIL--- 570
F++T A+V I E + E+ DI K N Y+F+DG+G I+ L ++ L
Sbjct: 565 AFTATEASVSIKRDEWE-EIEDIKPPKFEDGKPNPYLFTDGVGSISKSLGDKIWAELCSN 623
Query: 571 ---KLDGSPPPSAYQIRYAGYKGVVACWPAKDD---GIRMSLRGSMKKFKSCH---TSLE 621
+ S PSAYQIR+ GYKGVVA D G M LR SM+KF + +E
Sbjct: 624 RRDHGENSIQPSAYQIRFLGYKGVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIE 683
Query: 622 IC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC 680
I ++ +LNR ++ LL L V+ + F T+Q +K + + D V++
Sbjct: 684 IAQAFAHPNRCYLNRPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSVIS--- 740
Query: 681 AEQGNTAAIMLSAGFKP---------QTEPHLQGMLTYELGELKECQCF----------- 720
E G + S K +P + T L +++E
Sbjct: 741 -EHGLGRSFRFSYLVKQLQGLGLEINSKDPDKLNVDTPFLKQVREVAMMDVMRDIKHSAR 799
Query: 721 IQVSESSLENCFSKHGSRFAET----------------------KKLQVINGFVVIAKNP 758
I V +S L + G + K + + G ++ ++P
Sbjct: 800 ILVPDSHLLVGIADEGPAYVSAGFENVYCLPPGFIYACVQESPDGKAEWLEGHCLVTRSP 859
Query: 759 CLRPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
GDV+ + A+ +P LC + LV +G+R + G D+DGDL+ V
Sbjct: 860 VAHIGDVQRVRAIGKPPQGKLCLFSHIKNALVMSSQGNRSLASCLGGGDVDGDLFQVIQY 919
Query: 813 ENLIPPSKKSCPPMECTPAEAKPLTC-------------HVNHQNLGQICNAHVVHADRS 859
E L+P + + PME K +T ++N LG + + ++ AD+S
Sbjct: 920 EPLLPMTYEL--PMEYESVGTKAITTECTVDDICDFVVEYINSDVLGLLSDRLLMIADQS 977
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY----PDFMEIE-----EYQT 910
+ G D++CI LA+L + AVD PK G V + P PD+ E E
Sbjct: 978 KLGMNDKDCIRLAELCSQAVDYPKNGIPVDLNKEKLPHTLIRCKPDWHAAEVVSPRETDY 1037
Query: 911 YKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYD 948
Y+S + LG LYR NIS++ + PV +++
Sbjct: 1038 YRSTRALGELYR--------NISLTEPEPMKPVSKNFE 1067
>gi|403168646|ref|XP_003328239.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167590|gb|EFP83820.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1246
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 190/725 (26%), Positives = 324/725 (44%), Gaps = 105/725 (14%)
Query: 305 SFEIMFLVNAVMHKGILNQHQL---SDSFFDLLRCQPREVIVTAL----------KHIYS 351
+ + F + +++H IL +Q+ + + C +V + K+
Sbjct: 339 TIPVAFQIESLLHNSILLPYQILRVCQALMGIDECVAERALVQFIEKYSENNQGTKNGLQ 398
Query: 352 YKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTK----------AYW 401
+PV+ + L++ + + LN D R + ITPT+ +
Sbjct: 399 ASKPVY--LQVLQEALKASAQEANLNHLKIEGGDSFPCRTVTITPTRLSLQGPQIEQSNS 456
Query: 402 FLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
L + FLRV+ DE + A S + R + L+
Sbjct: 457 ILRLYQQTENFLRVSLADETGHRLRA---------------SREVEIHHLLRNRYRPFLT 501
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWF---FSKVGE-TSVLDIKNWMGEFTA--KNIAKY 515
G LCGR++ FL +S++ L+DH AWF F K + + I+ +G+F+ + A+Y
Sbjct: 502 KGMILCGRKFEFLGYSNSALKDHQAWFVCPFYKGDQLVTAASIRAKLGDFSKVIRIPARY 561
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG- 574
AR+ F+ST ++ + P+EV + D++RNG F+DG+G I+ DL EV ++L +
Sbjct: 562 MARIAQAFTSTRRSLTLRPSEVT-RMDDVERNGSCFTDGVGTISKDLVDEVHRVLNVGNI 620
Query: 575 --SPPPSAYQIRYAGYKGVVACWPA-KDDGIRMSLRGSMKKFKSCHT-SLEIC-SWTRFQ 629
S + YQIR G+KG+++ P K +RM R SM KF + + +L+I ++T+
Sbjct: 621 RKSISSTCYQIRLGGFKGMLSLDPTLKGKVVRM--RPSMDKFDAPDSLTLDIAGTFTKPL 678
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI 689
+LNR +I LL L + E+F +Q + K+ + +A ++ G+
Sbjct: 679 VAYLNRPLIKLLEDLGIPSEVFLRLQDKIIRKVENSRSSPKLAGNLMQQYSMGSGSGMPS 738
Query: 690 MLSAGFKPQTEPH-LQGMLTYELGELKECQCFIQV---SESSLENCFSKHG----SRFAE 741
ML + + ++ E +L QC + L+ ++ G F
Sbjct: 739 MLHKLSELLVDDRAVESDFIEECYDLMTVQCLRDLKYRGRIPLDKSYTLVGVADEDNFLP 798
Query: 742 TKKLQV-----------INGFVVIAKNPCLRPGDVRILEAVDR------PELHHLCDCLV 784
+ V + G + ++P L PGDVR++ AV + P L L +C+
Sbjct: 799 PDSIYVCVQTPNSAPMYLEGSFAVTRSPSLHPGDVRVVNAVGKLDPKRAPRLSSLVNCVA 858
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK-------SCPPM-----ECTPAE 832
FP +G+R + G DLDGDL+ V L+P K S P M +CT A+
Sbjct: 859 FPIQGERSLPSCLGGGDLDGDLFTVIGLPQLVPKRSKIQRAASYSPPEMRKLDRDCTIAD 918
Query: 833 AKPLTC-HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
+++ +G I H+ AD+ G +E+CI LA+L + AVD PKTG V +
Sbjct: 919 GADFFLDYISSDLVGMIATRHLHIADQCPEGTLNESCIKLAELHSDAVDYPKTGVPVNIR 978
Query: 892 SHLKP--KKYPDFM--------EIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDIN 941
S P + PDFM E E+Y Y+S +LG+L+R+I + +S++D +
Sbjct: 979 SLPNPPVRMKPDFMCHEHDSSKEGEDY--YESPNVLGKLFREIPADKIDIFIPASKIDDD 1036
Query: 942 PVDIH 946
++H
Sbjct: 1037 IAELH 1041
>gi|336467963|gb|EGO56126.1| hypothetical protein NEUTE1DRAFT_64449 [Neurospora tetrasperma FGSC
2508]
gi|350289794|gb|EGZ71019.1| RdRP-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 1350
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 183/648 (28%), Positives = 286/648 (44%), Gaps = 131/648 (20%)
Query: 386 IAEVRRLVITPTKAYWF---LESKDV--------ADRFLRVTFMDEGLQTMNANVLSYYV 434
+ ++ R ++TPT+ LE+K+ D FLRV F +E Q
Sbjct: 409 LTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFGEEDGQ----------- 457
Query: 435 APIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGE 494
D+ NS +++R K +L++G ++ GR Y FL FS + LR HS W +
Sbjct: 458 -----DLFFNSAVSMDAIYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIY 512
Query: 495 TSVLDIKN----WMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDH-ELPDIKRNG 548
L + N +G+F K+ A+ AAR+G FS T +V + +D DIKRN
Sbjct: 513 NGRLQLANNIIEGLGDFGNIKSPARRAARIGQAFSETPYSVSLDTHGIDVIRQRDIKRNE 572
Query: 549 YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRG 608
VFSDG+G I+ A+EV + P+ Q+R+AG KG++A A+ G ++ +R
Sbjct: 573 RVFSDGVGIISQG-ALEVIHREIPESKGYPNCLQVRWAGAKGMLAL-DARLPGRQICIRD 630
Query: 609 SMKKFKSC-HTSLEICSW-TRFQPGFLNRQIITLLSTLNVSDEIFWTVQ----------- 655
SM+KF+S LEIC ++ P LNRQ+I +L + + F +Q
Sbjct: 631 SMEKFRSRDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFMKLQEKELQRLRAIT 690
Query: 656 ---ASMASKLNLMLVASDVAFEVLTASCAE-----------QGNTAAIMLSA--GFKPQT 699
++A+ L L V V + +G A++L K +
Sbjct: 691 DNVQNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLKHKA 750
Query: 700 E-PHLQGMLTY----ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVI 754
P G+ + E G L+E + ++ F RF K G VV+
Sbjct: 751 RIPVPYGVTLFGVMDETGLLREGEVYV---------TFETVDGRF----KGPPTAGPVVV 797
Query: 755 AKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
++P L PGD++I V P H L +C+VF Q G+R ++ SG DLDGD + V W
Sbjct: 798 TRSPALHPGDIQIAYNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIW 857
Query: 812 DENLIPPSKKSCPPMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADR 858
D+ ++ + ++ P + E L V ++ LG I H++ AD
Sbjct: 858 DQRIV-STLRTFPAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILADE 916
Query: 859 SEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM-------------- 903
+ G D +C+ LA L + AVD K+G V + +P Y PDF+
Sbjct: 917 RDEGTLDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDKSTI 976
Query: 904 EIEE---------------YQTYKSNKILGRLYRQI--KGAYDENISV 934
++EE Y+ YKS KILG L+R + K + +NI +
Sbjct: 977 DMEEQYLKQDDDDGDDTPRYKYYKSEKILGHLFRAVDEKKIWTKNIKL 1024
>gi|346973013|gb|EGY16465.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1310
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 187/636 (29%), Positives = 281/636 (44%), Gaps = 147/636 (23%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D A+ F+RV F DE N + DI ++ ++ R + +L G +
Sbjct: 461 DHAEYFMRVQFCDE-----NGD-----------DIFLSAKVSNDHIYNRFRRVLQSGIQI 504
Query: 467 CGRRYSFLAFSSNQLRDHSAW----FFSKVGE-TSVLDIKNWMGEFTAKNI-AKYAARMG 520
GR YSFL FS + LR HSAW F K G+ S ++I +G+F I AK AAR+G
Sbjct: 505 AGRVYSFLGFSHSSLRSHSAWFSAPFVDKTGQLQSYVNIIKSLGDFEHIRIPAKCAARIG 564
Query: 521 LCFSSTHATVEIPPTEVDHE-----LPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS 575
FS T ++V + VDH +PD+K VFSDG+G I+ D A+E
Sbjct: 565 QAFSETTSSVSL----VDHGIVCQFIPDVKYGNRVFSDGVGTISRD-ALETIWPHLPRME 619
Query: 576 PPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRG-SMKKFKSCHT-SLEIC-SWTRFQPGF 632
P+ QIR+ G KG+++ ++ G M++R SM KF S +L IC + +R
Sbjct: 620 SLPTCLQIRWGGVKGMLSL-DSRLPGRVMNIRQESMLKFPSTDLDNLGICGAASRPLRMV 678
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDV----AFEVLTASCAEQGNTAA 688
LNRQ+I +L + V DE F+++Q +L V +D AF L QG +A
Sbjct: 679 LNRQMIKILEDMGVRDEWFFSLQKRELERLR--AVTADAWNTGAFLQL------QGIGSA 730
Query: 689 IMLSA--------GFKPQTEPHLQGMLTYELGELKECQCFIQ------------------ 722
LS G + + L+ T E L+E +
Sbjct: 731 FYLSTFIKTLDKYGINYRRDDFLR--CTVEAVVLRELRLLKHKARIPVPQGVTLFGIMDE 788
Query: 723 ---VSESSLENCFSKHGSRFAETKKLQ--VINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
+SE + C+ SR+ + + + +G +++ ++P L PGD++ + P H
Sbjct: 789 TGFLSEGEVYVCYD---SRYNGSLPIDSTLSDGNILVTRSPALHPGDIQWVRMRTPPVGH 845
Query: 778 HLCD---CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME---CTPA 831
L D C+VF Q G+R ++ SG DLDGDLY + WD P K+ P + TP
Sbjct: 846 PLRDLRNCIVFSQHGERDLPSQLSGGDLDGDLYNIIWDRQARP--KRFFAPADYPRITPT 903
Query: 832 E----------AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDS 881
E A + LG I H++ AD+ E G D +CI+ A++ +TAVD
Sbjct: 904 ELNRQVTRDDMAGFFVNFMKSDVLGMIATKHLILADQKEEGTLDADCIIFAEMHSTAVDF 963
Query: 882 PKTGKIVTMPSHLK---------------------PKKYPDFMEIE-------------- 906
KTG V M + K P +Y D +I+
Sbjct: 964 SKTGIPVDMQAMPKTNRIRPDLYSELTAHSFAPAPPTQYVDRQQIDFVEKPSASFYGGED 1023
Query: 907 --------EYQTYKSNKILGRLYRQI--KGAYDENI 932
++ Y+S KILGRLYR I K +D+++
Sbjct: 1024 EEEDAFRPAHKFYRSGKILGRLYRNIDEKRMWDQDV 1059
>gi|151370755|gb|ABS11001.1| RNA-dependent RNA polymerase 1 [Nicotiana clevelandii]
Length = 243
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 146/233 (62%), Gaps = 10/233 (4%)
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
+T ++ R+ S L +GF + +R+ FLAFSS+QLRD+S W F+ + DI+ WMGEF
Sbjct: 16 RTDIYLRILSTLRNGFVIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRKWMGEFQ 75
Query: 509 A-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI----KRNGYVFSDGIGKITPDLA 563
+N+AKYAAR+G F S+ T+ + EV+ +PD+ Y+FSDGIGKI+ D A
Sbjct: 76 QIRNVAKYAARLGQSFGSSRETLSVGRHEVE-VIPDVVCSLHGTNYIFSDGIGKISADFA 134
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEIC 623
VA +K P ++QIRY GYKGVVA P +++SLR SM K++S + L++
Sbjct: 135 RRVA--IKCGLQYTPFSFQIRYGGYKGVVAVDPYSS--MKLSLRNSMLKYESNNIKLDVL 190
Query: 624 SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
W+++QP +LNRQ++TLLSTL V D++F Q +L+ +L S A E L
Sbjct: 191 GWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLKAQEAL 243
>gi|402078468|gb|EJT73733.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 197/733 (26%), Positives = 323/733 (44%), Gaps = 133/733 (18%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVI----------VTALKHIYSYK 353
VSF+++F++ A++ ++ L + DL R + + V AL +
Sbjct: 340 VSFDVLFVLQALLFNAYMHPCLLREILCDLRRRHKADTLAGRKPISAAAVKALMESTDFP 399
Query: 354 RPVFD-AYEKLKDVQECLIKNP-------KLNEGPKNIDDIAEVRRLVITPTKAYWF--- 402
P D ++ +L + E + + L G ++ + R V+TPT+
Sbjct: 400 APYGDPSHFELASIMEWVSEKHVEMESGYALRFGEVQSPNLTNIFRAVVTPTRITLHGPE 459
Query: 403 LESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFK 454
+E+K+ D FLRV F DEG +D+ + V++
Sbjct: 460 VETKNRVLRKHPGHQDYFLRVQFCDEG----------------SRDLRFETGVSVERVYQ 503
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--KVGETSVL----DIKNWMGEFT 508
R K +L G L GR Y+FL FS + LR S WF + + ET L I +GEF
Sbjct: 504 RFKDVLLSGIRLPGRIYNFLGFSHSSLRTSSVWFCAAFRDKETGKLVNHKSIIEGLGEFG 563
Query: 509 -AKNIAKYAARMGLCFSSTHATVEIPPTE---VDHELPDI--KRNGYVFSDGIGKITPDL 562
+ AK AAR+G FS T + V + + H +PDI FSDG+G ++ ++
Sbjct: 564 HIRCPAKLAARIGQAFSETPSVVPLSGYSDILIKH-VPDIYSADGRRCFSDGVGSVSEEM 622
Query: 563 AMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLE 621
+ + + + P+ +QIR+AG KG++A I + R SMKKF S LE
Sbjct: 623 MRIIWAHVPMKKN-APTCFQIRHAGCKGMLALDTTLSGKI-IYFRDSMKKFDSIDQEDLE 680
Query: 622 IC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLV-ASDVAFEVLTAS 679
IC + ++ P LNRQ+I +L + + F +Q+ +L + A +V + TA+
Sbjct: 681 ICDTGSKAIPLVLNRQMIKILEDMGADHKWFLKLQSYRLKELQAVTANAYNVQTFLHTAN 740
Query: 680 CAEQGNTAAIMLSA---GFKPQTEPHLQG----MLTYELGELKECQCFIQVSESSL---- 728
+ + + A G + +P L+G ++ EL LK + I VS+
Sbjct: 741 VGQPISLGKFIYWAHLNGMDYKKDPFLRGVVEALVLQELRLLKH-KARIPVSKGKTLFGL 799
Query: 729 --ENCFSKHGSRFAETKKLQVINGF---------VVIAKNPCLRPGDVRILEAVDRPELH 777
E + G + T + I GF V++ ++P L PGD++I+ + P H
Sbjct: 800 IDETGLLREGQVYV-TFASEKIPGFQKPPRHSQSVIVTRSPALHPGDIQIVTNIIPPPDH 858
Query: 778 HLC---DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK------KSCPPMEC 828
L + + F + G R + SG DLDGD+Y + WD+ ++P + + PP +
Sbjct: 859 PLAAHRNSIFFSRHGSRDLPSMLSGGDLDGDIYNIIWDKEVLPKQRFHPADYSNAPPQDI 918
Query: 829 -TPAEAKPLTCH----VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
P E + + H + + NLG I H++ AD+ G +C LA+L +TAVD K
Sbjct: 919 GRPVEREDIVQHFVDFMKNDNLGAIATRHMILADQMVEGTLHPDCQKLAELHSTAVDFSK 978
Query: 884 TGKIVTMPSHLKPKKY-PDFME--------------IEEYQT-----------------Y 911
TG V M + ++ PDF+ +E+Y+ Y
Sbjct: 979 TGIPVDMKELPRTNRFRPDFLSPGPIANLHDKDEILMEQYRAPDPEEELEHGEPPRFKYY 1038
Query: 912 KSNKILGRLYRQI 924
KS KILG+LYR++
Sbjct: 1039 KSGKILGKLYREV 1051
>gi|400598650|gb|EJP66359.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1260
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 176/608 (28%), Positives = 265/608 (43%), Gaps = 120/608 (19%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D FLRVTF DE Q D++ N +++R + +L G +
Sbjct: 472 DHGDYFLRVTFCDEDGQ----------------DLSFNPRVSNDAIYERYRQVLIKGIRI 515
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKV----GETSVLD-IKNWMGEFTAKNI-AKYAARMG 520
GR++SFL FS + LR HS WF + G+ D I +G+F+ I AK AAR+G
Sbjct: 516 AGRQFSFLGFSHSSLRSHSTWFMAPFVGADGQRQSRDTILAALGDFSDIRIPAKCAARIG 575
Query: 521 LCFSSTHATVEIPPTEVD-HELPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
FS T V++ + + +PD+K VFSDG+G ++ E + L S
Sbjct: 576 QAFSETPYAVDLFKSGIGVRWIPDVKSADGERVFSDGVGTLSRAAVEEFCKALP-GRSTT 634
Query: 578 PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH-TSLEICSW-TRFQPGFLNR 635
+ +QIR+AG KG++ + + SM KF S L IC +R LNR
Sbjct: 635 ATCFQIRWAGVKGLLVLDTRLQGKVICVRKESMMKFPSQDLQELGICDLASRPLRLVLNR 694
Query: 636 QIITLLSTLNVSDEIFWTVQ--------ASMASKLN--LMLVASDVAFEVLTASCAEQGN 685
Q+I +L + D F +Q A A+ LN L D+ + +S +Q +
Sbjct: 695 QVIKILEDMGTRDSWFLALQHDALEFLRAVTATALNTSTFLQYQDIGSAIGLSSFIKQLD 754
Query: 686 TAAI--MLSAGFKPQTE----------------PHLQGMLTY----ELGELKECQCFIQV 723
I A K E P +G+ + E G L+E Q ++
Sbjct: 755 KMDIDYRRDAFLKSVVEHVVLRELRLLKHKARIPVHKGVTLFGVMDETGFLQENQVYV-- 812
Query: 724 SESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLC 780
+ + K G R T + +G +++ ++P L PGD++ ++ V PE H L
Sbjct: 813 ---TYDATRGKSGERLDTT----LTDGPIIVTRSPALHPGDIQYVQMVTPPESHPLRSLR 865
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT----PAEAKPL 836
+C+VF QKG R ++ SG DLDGDLY + WD P + + P + T P+ +P+
Sbjct: 866 NCIVFSQKGSRDLPSQLSGGDLDGDLYNIIWDPRARP--QWTFAPADYTRVVPPSLDRPV 923
Query: 837 TCH---------VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
T + LG I H + AD + G D CI LA++ +TAVD KTG
Sbjct: 924 TRQDIADFFVDFMKSDILGLIAIRHQIMADVQDLGTQDGECIRLAEMHSTAVDYSKTGIA 983
Query: 888 VT---MPSHLKPKKYPDF----------------------------MEIEEYQTYKSNKI 916
V +P P+ PDF M + + + ++S KI
Sbjct: 984 VNWRDLPR--APRSRPDFLAPAPPLHLYDLGQIGHIAEEDDDDGNDMALAKPRYHRSEKI 1041
Query: 917 LGRLYRQI 924
LGRLYR+I
Sbjct: 1042 LGRLYREI 1049
>gi|340521489|gb|EGR51723.1| Hypothetical protein TRIREDRAFT_55637 [Trichoderma reesei QM6a]
Length = 1734
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 216/452 (47%), Gaps = 38/452 (8%)
Query: 459 ILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAA 517
+L G ++ G Y+F S++QL+ + + + E ++ +G+FT K +AK A
Sbjct: 123 LLKAGISIHGVHYNFYGHSNSQLKSRTCYLCAASKEDISRKVEA-LGDFTKMKTVAKKAK 181
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL---DG 574
R+GL FS A +++ P V ++PDI+ ++F+DG G I P LA E+++ ++ +
Sbjct: 182 RIGLLFSVARAAMQVDPKMV-QDIPDIEVGDFIFTDGCGLIAPHLAKELSRRTRIVFRNM 240
Query: 575 SPPPSAYQIRYAGYKGVVACWPAKDDGIR-MSLRGSMKKFKSCHTSLEICSWTRFQPGFL 633
PS +QIRY GYKGVV P G+ + +R SMKKF + S++ + G L
Sbjct: 241 RYTPSVFQIRYRGYKGVVTLDPTMAKGVPWLKMRKSMKKFSGG----DDLSFSPYVFGHL 296
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLT-ASCAEQGNTAAIMLS 692
N ++I LL L +S + Q L VAF +L + E I
Sbjct: 297 NDEVIVLLDALGISRQTLLRKQQEHFEFLAQAYHNPIVAFRILCHLNMPEDAEKVIIDSL 356
Query: 693 AGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSL-------------ENCFSKHGSRF 739
+P ++ L + E +C I + +S L C K +
Sbjct: 357 DAVRPTINRLVKAEYDKMLNKRDEQRCRILIPKSRLLFGVCDAWGVLKPGQCAVK-VTMD 415
Query: 740 AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASG 799
+ + + V++ +NPCL PGD++ L+ V+RPEL HL DC+VFP G RP + SG
Sbjct: 416 GDGQPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAHLVDCIVFPTTGRRPTADMMSG 475
Query: 800 SDLDGDLYYVTWDENLIPP--SKKSCPPMECTPAEAKPLT--------CHVNHQNLGQIC 849
DLDGD ++VTWD ++IP S+ + P P P+T + +LG++
Sbjct: 476 GDLDGDTFFVTWDPDIIPTTVSQAAHYPGVREPLRFSPITDEDRLVYFAKYTNVSLGRVK 535
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDS 881
N ++ A + GA C L +L + VD
Sbjct: 536 NLYLKWARAT--GAMSAECQELNRLFSQCVDG 565
>gi|358393899|gb|EHK43300.1| hypothetical protein TRIATDRAFT_294361 [Trichoderma atroviride IMI
206040]
Length = 1759
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 218/454 (48%), Gaps = 40/454 (8%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAAR 518
L G ++ G Y+F S++QL+ + +F + E I+ +G+FT K +AK A R
Sbjct: 124 LRTGISIQGVHYNFYGHSNSQLKSRTCYFLAAPKEQISKKIEG-LGDFTKMKTVAKKAKR 182
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVA---QILKLDGS 575
+GL FS A +++ P +V+ ++PDI+ YVF+DG G I P LA E++ +I+ +
Sbjct: 183 IGLLFSVARAAMKVDPKKVE-DIPDIEVGDYVFTDGCGLIAPALAKELSRRTRIIFRNMR 241
Query: 576 PPPSAYQIRYAGYKGVVACWPA-KDDGIRMSLRGSMKKFKSC-HTSLEICSWTR-FQPGF 632
PS +Q+RY GYKGVV P G + +R SMKKF S + +++ + G
Sbjct: 242 YTPSVFQLRYRGYKGVVTLDPTMAKGGTWLKMRKSMKKFSGGDDLSFSVVEYSKPYVFGH 301
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
LN ++I LL L V +I Q + L AF VL C A +
Sbjct: 302 LNDEVIVLLDALGVDRKILLRKQQEHFNFLAEAYQDPRAAFRVL---CHLDRPDLAERVI 358
Query: 693 AGFKPQTEPHLQGMLTYE----LGELKECQCFIQVSESSLE----NCFSKHGSRFAETKK 744
P + ++ E L + E +C I + +S L + + K
Sbjct: 359 IDSLDSVRPSINRLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCAVKV 418
Query: 745 LQVINGF--------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNE 796
++G V++ +NPCL PGD++ L+ V+RPEL HL DC+VFP G RP +
Sbjct: 419 TMDVDGLPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAHLVDCIVFPTTGRRPAADM 478
Query: 797 ASGSDLDGDLYYVTWDENLIPP--SKKSCPPMECTPAEAKPLT--------CHVNHQNLG 846
SG DLDGD ++VTWD ++IP S+ + P P P+T + +LG
Sbjct: 479 MSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFAPITDDDRLLYFAKYTNASLG 538
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAATAVD 880
++ N ++ A + A C L +L + VD
Sbjct: 539 RVKNLYLRWARAT--NAMRPECQELNRLFSQCVD 570
>gi|358384596|gb|EHK22193.1| hypothetical protein TRIVIDRAFT_149633 [Trichoderma virens Gv29-8]
Length = 1731
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 138/457 (30%), Positives = 217/457 (47%), Gaps = 50/457 (10%)
Query: 459 ILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAA 517
+L G + G Y+F S++QL+ + + + E ++ +G+FT K +AK A
Sbjct: 123 LLRAGITIQGVHYNFYGHSNSQLKSRTCYLCAASKEQIAQKVEA-LGDFTKMKTVAKKAK 181
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL---DG 574
R+GL FS A +++ P +V+ ++PDI+ ++F+DG G I P LA ++++ +K+ +
Sbjct: 182 RIGLLFSVARAAMQVDPKKVE-DIPDIEVGDFIFTDGCGLIAPGLASQLSRRIKIAFRNM 240
Query: 575 SPPPSAYQIRYAGYKGVVACWPA-KDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFL 633
PS +QIRY GYKGVV P G + +R SMKKF + S++ + G L
Sbjct: 241 RYTPSVFQIRYRGYKGVVTLDPTMAKGGPWLKMRKSMKKFSGG----DDLSFSPYVFGNL 296
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLT-ASCAEQGNTAAIMLS 692
N ++I LL L +S + Q L VAF +L + E I
Sbjct: 297 NDEVIVLLDALGISRQTLLRKQQEHFDFLAKAYKDPRVAFRILCHLNMPEVAERVIIDSL 356
Query: 693 AGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSL-------------ENCFSK----- 734
+P+ + L + E +C I + +S L C K
Sbjct: 357 DAVRPKINKLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCAVKVTMDG 416
Query: 735 HGSRFAETKKLQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPH 793
G +A + G V++ +NPCL PGD++ L+ V+RPEL HL DC+VFP G RP
Sbjct: 417 DGQPYA-------LKGMKVLVTRNPCLHPGDLQKLDVVERPELAHLVDCIVFPTTGRRPT 469
Query: 794 TNEASGSDLDGDLYYVTWDENLIPP--SKKSCPPMECTPAEAKPLT--------CHVNHQ 843
+ SG DLDGD ++VTWD ++IP S+ + P P P+T +
Sbjct: 470 ADMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFSPITDDDRLLYFAKYTNA 529
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVD 880
+LG++ N ++ A S A C L +L + VD
Sbjct: 530 SLGRVKNLYLKWARAS--NAMSSECQELNRLFSQCVD 564
>gi|222629015|gb|EEE61147.1| hypothetical protein OsJ_15104 [Oryza sativa Japonica Group]
Length = 335
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 166/340 (48%), Gaps = 49/340 (14%)
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
+ DCLVFPQ+G+RPH NE SG DLDGDLY++TWD+ LIP +K PM+ T + +
Sbjct: 1 MVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDH 58
Query: 839 HVN-------------HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
V + +LG I AH++HADRS A C+ LA L + AVD KTG
Sbjct: 59 VVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTG 118
Query: 886 KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKG----AYDENISVSSEVDIN 941
MP L+P++YPDFME E Y SN +LG+LYR G + D SS +
Sbjct: 119 APAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPS 178
Query: 942 PVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMP 995
P YD DLEVPGS +F A Y+ +L L+ Y ++ R+
Sbjct: 179 PT---YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYL 235
Query: 996 KYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYH 1055
K ++++ E+++R+ + A +E R L + K + ASAWY+VTYH
Sbjct: 236 KRDNKRYFEMKDRIVAAVDALHREARGW---------LLSSRKEEDASRMASAWYRVTYH 286
Query: 1056 REWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQ 1095
+ R SF WIA D L IK Q
Sbjct: 287 PD------------RRRGKRFWSFPWIACDNLLAIKASSQ 314
>gi|367034442|ref|XP_003666503.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
gi|347013776|gb|AEO61258.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
Length = 1182
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 194/720 (26%), Positives = 298/720 (41%), Gaps = 149/720 (20%)
Query: 299 HYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR--------CQPREVIVTALKHIY 350
H + F+++FL+ A+M G L+ +S L++ P V V A K ++
Sbjct: 315 HRANSLPFDLLFLLQALMTNGYLHPTTISALAQRLIQRFEAARKTGGPPPVSVDAFKKLF 374
Query: 351 S---YKRPV-------FDAYEKLKDVQECLIKNPKLNEGPK-----NIDDIAEVRRLVIT 395
Y P D + E L++ P+ D + R+V+T
Sbjct: 375 DWIDYPSPYGNPDMFEVDGIMAYLEESESLVRE---GASPRARIFEETQDRTRIFRVVVT 431
Query: 396 PTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKR 455
PT + +R LR + + + + D+ NS ++ R
Sbjct: 432 PTSVLLHGPELEPMNRVLR------KFPNHSYFIRAQFCDEAGNDLFFNSKVSLDRIYNR 485
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW----FFSKVGETSVLDIKNWMGEFT-AK 510
KSILSDG + GR Y L FS + LR HSAW FF + I +G+F +
Sbjct: 486 FKSILSDGIQIAGRVYKLLGFSHSSLRAHSAWLSAPFFHQNQRHGPDFIIETLGDFNDIR 545
Query: 511 NIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDIKRNGYVFSDGIGKITPDLAMEVAQI 569
+ A+ AAR+G FS T +++ + +PD++RNG VFSDGIG I+ D V ++
Sbjct: 546 SPARRAARIGQAFSETPWALDLDEYGIQVSRIPDVERNGRVFSDGIGTISHDALSAVYKV 605
Query: 570 L-KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW-TR 627
+ K G P+ QIR+AG KG++A P +G R+ +R SM KF S LEIC +R
Sbjct: 606 IPKSKGF--PTCLQIRWAGAKGMLALDPLL-EGRRICIRDSMIKFASNDKQLEICDMASR 662
Query: 628 FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA 687
P LNRQ+I +L + DE F +Q++ +L + S + TAS A
Sbjct: 663 PMPMVLNRQLIKILEDMKAPDEWFLNLQSTELQRLRGI---SATVYN--TASFIRMQKVA 717
Query: 688 AIMLSAGFKPQTE---------------------------------PHLQGMLTY----E 710
+ F QTE P +G+ + E
Sbjct: 718 ESIKLHDFLRQTEAMGIDYRQDSFLRGAVEIILLRELRLLKHKSRIPVREGITLFGVMDE 777
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
G LKE Q ++ F R+A+ + G +++ ++P L PGD
Sbjct: 778 TGFLKEGQVYV---------TFDTEEGRYAQPPE----PGPLLVTRSPALHPGDW----- 819
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPP--MEC 828
G R ++ SG DLDGD+++V WD ++ P
Sbjct: 820 ------------------GSRDLPSQLSGGDLDGDVFHVIWDPEVVGALTTYQPADYGRT 861
Query: 829 TPAEA-KPLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATA 878
TP E +P+T + LG I H++ AD+ E G D+NCI LA+L ++A
Sbjct: 862 TPPELNRPVTLADIASFFVDFMKTDQLGVIAIRHMILADQKEDGTRDQNCIALAELHSSA 921
Query: 879 --VDSPKTGKIVTMPSHLKPKKYPDFMEIEE------------YQTYKSNKILGRLYRQI 924
D G +T+ H K D ++E Y YKS +I+G+LYR +
Sbjct: 922 WRPDFLAPGPSITV--HDKSNISLDDHVVQEDSDSEDEEGQPRYGYYKSERIIGQLYRAV 979
>gi|393247829|gb|EJD55336.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 177/632 (28%), Positives = 283/632 (44%), Gaps = 119/632 (18%)
Query: 384 DDIAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSY 432
D +V++++ITPT+ + ++R FLRVTF D
Sbjct: 419 DSPLQVQKIIITPTRVKLSGPEPEQSNRVLRRYAENIDAFLRVTFAD------------- 465
Query: 433 YVAPIVKDITSNSFSQKTGVFKRVKSI----LSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
D S + ++ + VKS L +G + GR++ FLA+SS+ L++HS WF
Sbjct: 466 ------NDEYSYHYDREVDIPTFVKSAVGIPLKNGITIAGRKFEFLAYSSSALKEHSVWF 519
Query: 489 FSKVGET------SVLDIKNWMGEFTAKN--IAKYAARMGLCFSSTHATVEIPPTEVDHE 540
+ E + I++ +G+F + A+ ARM FS+T +VE+ +
Sbjct: 520 VTPFVEEKTGTYHTAKTIRDSLGDFEKEKYCAARLGARMAQAFSATDPSVEVEEILPLDD 579
Query: 541 LPDIKRNGYVFSDGIGKITPDLAMEVAQIL--------KLDGSPPPSAYQIRYAGYKGVV 592
+P SDG+G ++ D + +V + L + P PSA+QIRY G KG++
Sbjct: 580 IPKASSGPQCMSDGVGTMSRDFSEQVWEALESRRNKGRRGKNRPAPSAFQIRYKGAKGML 639
Query: 593 ACWPAKDDGIRMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEI 650
+ K G + LR SM KF+ ++ LEI ++ +LNR +I LL L V ++
Sbjct: 640 SV-DYKLKGSVICLRPSMIKFEDLNSRELEIARAFNTPARMYLNRPLIVLLEGLGVKPDV 698
Query: 651 FWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYE 710
F +Q + ++ + D A +L + G AA L + F + + E
Sbjct: 699 FMNLQQAALEDIHKAAGSLDTAARMLES----HGLGAAFRLPSLFTSLHKLRDKHSAISE 754
Query: 711 LGELKECQCFIQVSESSLENC--------------------------FSKHGSRFA---- 740
L L E F +V + ++ + + K G FA
Sbjct: 755 L--LAEDDFFRRVLDFAINHIRRELKYKARIPVPDSWTLVGVVDVHDYLKEGEIFAAVKP 812
Query: 741 -ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE-----LH-HLCDCLVFPQKGDRPH 793
+ KK + G ++I ++P + PGDV+++ A+ RP +H L +C+VF KG R
Sbjct: 813 RDAKKPFYLQGPMLITRSPVIHPGDVQVVRAIGRPPPGSPFVHEELPNCVVFSIKGKRSL 872
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKSC-PPMECTPAEAKPL-------------TCH 839
+ G D DGD+Y + L P KSC PP E P + K L T +
Sbjct: 873 ASCLGGGDYDGDIYNICPLTELHP---KSCHPPAEYAPGQRKILDRPCGIEDIADFVTEY 929
Query: 840 VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK- 898
+N LG I ++ AD SE G F +C LA+L + AVD PKTG V +PK+
Sbjct: 930 INSDLLGHISVNWLLIADASERGIFHPDCFKLAQLHSDAVDYPKTGMPVPHKDIPQPKQG 989
Query: 899 -YPDFM--EIEEYQT--YKSNKILGRLYRQIK 925
PD+ E++E+ Y S + LG+L+R I+
Sbjct: 990 VRPDWQASELKEHDKDHYVSQRALGQLFRAIE 1021
>gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1]
Length = 1467
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 172/633 (27%), Positives = 273/633 (43%), Gaps = 150/633 (23%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D FLRV F +EG Q D+ + ++ + + ++ G +
Sbjct: 469 DYNDYFLRVLFCEEGGQ----------------DLRFHPKVDNEPIYSQFRRMMDHGIQI 512
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGET-----SVLDIKNWMGEFTAKNI-AKYAARMG 520
GR++ FL FS + LR HSAWF + + S I +G+F + AK AAR+G
Sbjct: 513 AGRKFDFLGFSHSSLRSHSAWFSAPFIDKDRQLQSPEAILQALGDFRDIRVPAKCAARIG 572
Query: 521 LCFSSTHATVEIPPTE-VDHELPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
FS T V I V +PD+K VFSDG+G I+ + + L ++ S
Sbjct: 573 QAFSETPYAVPIFENNIVPRYIPDVKSEDGSRVFSDGVGTISQEALEAIWPYLSMN-SAA 631
Query: 578 PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEICSWTRFQPG--FLN 634
P+ QIR+ G KG+++ + + + SM KFKS T L IC T +P LN
Sbjct: 632 PTCLQIRWGGCKGMLSLDTRLEGKVFCIRQESMMKFKSEDTGELGICD-TASKPLRLVLN 690
Query: 635 RQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA------A 688
RQ+I +L + DE F+ +Q + A ++L A+ NT+ A
Sbjct: 691 RQMIKILEDMGTRDEWFFELQNN--------------ALDILRNVTADATNTSSFLEHQA 736
Query: 689 IMLSAGFKPQTEPHLQGM-----------------------------------------L 707
I ++ G P+ L+ M +
Sbjct: 737 IGINMGL-PRLVKQLEKMDIDYRRDKFLKAAVEHVVLRELRLLKHKARIPVDNGVTLFGI 795
Query: 708 TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRI 767
E G LKE + ++ + + + ++ SR K + +G +++ ++P L PGD+++
Sbjct: 796 MDETGFLKEGEVYV-----TYDKTYGRNNSRGI---KSTLTDGEIIVTRSPALHPGDIQL 847
Query: 768 LEAVDRPELHHL---CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
++ V P+ H L +C+VF QKG R + SG DLDGD+Y + WD +P +
Sbjct: 848 VKQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGDLDGDIYNIIWDPEAMP--SRVFR 905
Query: 825 PMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILL 871
P + +PL V ++ LG I HV+ AD ++ G+ D +CI L
Sbjct: 906 PADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIATRHVILADYNDLGSIDRDCIAL 965
Query: 872 AKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFMEI------------------------- 905
A+L +TAVD KTG V + + + P+ PDF+
Sbjct: 966 AELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPLKLYDKGQLAHIGEDDEMDDAD 1025
Query: 906 ----EEYQTYKSNKILGRLYRQI--KGAYDENI 932
+ Y+S KILG+LYR + K +DE+I
Sbjct: 1026 DMARTKTNYYQSEKILGQLYRNVDEKKIWDEDI 1058
>gi|380095764|emb|CCC05810.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1230
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 170/595 (28%), Positives = 263/595 (44%), Gaps = 106/595 (17%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV F +E Q D+ NS +++R K +L+ G ++ GR
Sbjct: 446 DHFLRVQFGEEDGQ----------------DLFFNSTVSMDVIYQRFKDVLTKGISVGGR 489
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVL----DIKNWMGEF-TAKNIAKYAARMGLCFS 524
Y FL FS + LR HS W + VL +I +G+F ++ A+ AAR+G FS
Sbjct: 490 VYRFLGFSHSSLRAHSLWLSAPFIHNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFS 549
Query: 525 STHATVEIPPTEVDHELP-----DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPS 579
T +V + DH + D+KR VFSDG+GKI+ A+EV P+
Sbjct: 550 ETPYSVSLH----DHGIAVIRQNDVKRGKRVFSDGVGKISQG-ALEVIHREIPASKGYPN 604
Query: 580 AYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEICSW-TRFQPGFLNRQI 637
Q+R+AG KG++A A+ G ++ +R SM+KF+S LEIC ++ P LNRQ+
Sbjct: 605 CLQVRWAGAKGMLAL-DARLPGRQICIRDSMEKFRSHDEEHLEICDMASKPIPLMLNRQM 663
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKP 697
I +L + + F +Q +L + + L C L K
Sbjct: 664 IKILEDMGAPAKWFVRLQEKELQRLRAITNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKM 723
Query: 698 ----QTEPHLQGM----LTYELGELKE---------CQCFIQVSESSLEN------CFSK 734
+ + L+G+ + EL LK F + E+ L +
Sbjct: 724 NIDYRKDQFLRGIVESVVLRELRLLKHKARIPVPRGITLFGVMDETGLLREGEVYVTYET 783
Query: 735 HGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDR 791
RF + +G VV+ ++P L PGD++I + V P H L +C+VF Q G+R
Sbjct: 784 VDDRFKDPP----TSGSVVVTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQNGER 839
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKK--SCPPMECTPAE----------AKPLTCH 839
++ SG DLDGD + V WD+ ++ + + TP E A
Sbjct: 840 DLPSQLSGGDLDGDTFNVIWDQKIVSKLETFAAADYPRVTPRELNREIESKDMADFFVEF 899
Query: 840 VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY 899
+ +LG I H++ AD + G DE+C+ LA+L + AVD K+G V + +P +Y
Sbjct: 900 MKADHLGVIAVRHMILADVRDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPRPPRY 959
Query: 900 -PDFM--------------EIEE---------------YQTYKSNKILGRLYRQI 924
PDF+ ++EE Y+ Y S K+LG+LYR +
Sbjct: 960 RPDFLVNRPDVKIHDKSKIDLEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYRAV 1014
>gi|346325370|gb|EGX94967.1| rna-dependent rna polymerase [Cordyceps militaris CM01]
Length = 1252
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 183/616 (29%), Positives = 266/616 (43%), Gaps = 125/616 (20%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D+FLRV+F DE Q + N P V + +++R + +L+ G +
Sbjct: 466 DRGDQFLRVSFCDEDGQRLAFN-------PRVSN---------DPIYERFREVLTKGIRI 509
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKV----GETSVLD-IKNWMGEFT-AKNIAKYAARMG 520
GR +SFL FS + LR HS WF + G+ D I +G F+ AK AAR+G
Sbjct: 510 AGRHFSFLGFSHSSLRSHSTWFLAPFIDADGQRQNRDTILAVLGNFSDILTPAKCAARIG 569
Query: 521 LCFSSTHATVEIPPTEVD-HELPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
FS T V++ T + +PD+K VFSDG+G I+ + + L S
Sbjct: 570 QAFSETPYAVDLFETRIGVRWIPDVKSADGNRVFSDGVGTISWGAVEDFWKALP-KRSAG 628
Query: 578 PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH-TSLEICS-WTRFQPGFLNR 635
+ +QIR+AG KG++ P + + SM KF S L IC +R LNR
Sbjct: 629 VTCFQIRWAGVKGLLVLDPRLPGKVICVRKESMMKFPSQDLKELGICDVASRPLRLVLNR 688
Query: 636 QIITLLSTLNVSDEIFWTVQ--------ASMASKLNL--MLVASDVAFEVLTASCAEQGN 685
Q+I +L + S F +Q A A+ LN L D+ + S +Q +
Sbjct: 689 QVIKILEDMGTSASWFLALQNDALDFLRAVTATPLNTSTFLQYQDIGSAIGLPSFIKQLS 748
Query: 686 TAAI--MLSAGFKPQTE----------------PHLQGMLTY----ELGELKECQCFIQV 723
I K E P +G+ + E G L E + +I
Sbjct: 749 KMDIDYRHDTFLKSVVEHVVLRELRLLKHKARIPVPKGVTLFGVMDETGFLGENEVYI-- 806
Query: 724 SESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLC 780
+ ++ K G R T +I+G V++ ++P L PGD++I + V P+ H L
Sbjct: 807 ---TFDSTRGKSGERMDAT----LIDGPVIVTRSPALHPGDIQIAKMVTPPDSHPLKSLR 859
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT----PAEAKPL 836
+C+ F Q+G R ++ SG DLDGDLY V WD P K + P + T P+ +P+
Sbjct: 860 NCIAFSQRGSRDLPSQLSGGDLDGDLYNVIWDPKAYP--KHTFDPADYTRVVPPSLDRPV 917
Query: 837 TCH---------VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
T H + LG I H + AD E G D +CI LA++ +TAVD KTG
Sbjct: 918 TRHDIANFFIDFMRSDILGLIATRHQILADVQEAGTSDASCIKLAEMHSTAVDYSKTGIA 977
Query: 888 VT---MPSHLKPKKYPDF-----------------------------MEIEEYQTYKSNK 915
V MP P+ PDF M + + ++S K
Sbjct: 978 VNWRDMPR--APRSRPDFLAPAPPVFLYDLGQISHIAEDDDDDDGNDMNSAKPRYHRSEK 1035
Query: 916 ILGRLYRQIKGAYDEN 931
ILG LYR I DEN
Sbjct: 1036 ILGHLYRGI----DEN 1047
>gi|308469043|ref|XP_003096761.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
gi|308241452|gb|EFO85404.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
Length = 1721
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 214/879 (24%), Positives = 355/879 (40%), Gaps = 226/879 (25%)
Query: 388 EVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAP 436
+VR++++TPT+ + +A+R +R TF D+ Q M N L
Sbjct: 479 KVRKVILTPTRIIFLAPETIMANRAINGADHDGTRIIRATFRDDNFQKMRYNQL------ 532
Query: 437 IVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS 496
+D+ +R + L DGF + GR +S+LA S++Q+RD A+F + +T
Sbjct: 533 --RDLLE----------ERTLNHLRDGFVIYGRGFSYLASSNSQMRDGGAYFMERWNKTQ 580
Query: 497 ---------------------VLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHAT--VEI 532
++D + +G+F+ +I K AR+G CF+ VEI
Sbjct: 581 LAEYKERYPRIRFPDPSFKPKIIDYRKKLGKFSKTGSIPKAMARLGQCFTQARRCDGVEI 640
Query: 533 PPTEVDHELPDIKRNG-YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV 591
+ + + G Y F+DG+G I+ LA ++ Q + + P SAYQIR+ G KG+
Sbjct: 641 CLQDYTMIVDAVGGAGQYKFTDGVGCISARLAAKICQSISIKCLP--SAYQIRFRGLKGM 698
Query: 592 VACWPAKDD---------------------------GIRMSLRGSMKKFKSCHTS----- 619
+A P+ D+ + RGS KF S
Sbjct: 699 LAIEPSIDEIADYFLNIYRKGFMIKESIESADLEPYTFKCLFRGSQLKFHSSRGKVEEWP 758
Query: 620 LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTAS 679
+E+ W+ P LN+ I +L ++ + + +++ +L V + +
Sbjct: 759 IEMVKWSSPTPVTLNKPFINILDQVSAMQSL--KCHKRVTARIEELLSMEMVNYSKWIVN 816
Query: 680 CAEQGNT----------AAIMLSAGFKPQTEPHLQGMLTY-------------------- 709
+ N A + GF EP + ++
Sbjct: 817 EEQCRNRLEGMPRRVHFATLERKYGFVLSAEPFFRSIVKAAIDSSMSRLLRKLQIPIPSH 876
Query: 710 ----------ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPC 759
E G+L+ Q F++ +E+ K F T + G V++ K P
Sbjct: 877 LGRSVFGVVDETGQLQYGQVFVRYTENVDNKSPLKD---FGTT-----LTGKVLVTKFPS 928
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
L GDVR+ EAVD PEL+HL D +VFPQ G R +E +GSDLDGD Y V WD L
Sbjct: 929 LCEGDVRMYEAVDIPELYHLKDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDAELFFER 988
Query: 820 KKSCPPMECTPAEAKPLTCHVNH------------QNLGQICNAHVVHADRSEYGAFDEN 867
+ E + ++H +++G H+ +D ++G +
Sbjct: 989 NEPAFAYSSEKPEVPFTSSEMDHKMNLFYAEYMKQEDVGVTSTNHLHQSD--QFGINSDV 1046
Query: 868 CILLAKLAATAVDSPKTGKIVTMP--------SHL--------KPKKYPDFMEIEEYQ-- 909
C +A A A+D K+G V P +H+ + ++ PDF Y
Sbjct: 1047 CNAIAVKNAMALDYSKSG--VAPPPLTSEWTFNHVTGINEPPERSERRPDFAA-NRYNGN 1103
Query: 910 -TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKC 968
+Y+S+++LG+L+R+++ D + SS P++I D L + AR Q
Sbjct: 1104 VSYQSSRLLGQLHRELRCVND--VLASSSAKQVPIEI--DPLLVWKRWEKYAEVARVQMI 1159
Query: 969 SYDGQLNGLLGQYNVNR---------KEFRHIWS------MPKYNSRKQGELQERLKHSY 1013
Y+GQL ++ + +N +E R+ S M YN+ E Q + Y
Sbjct: 1160 RYNGQLRSIMDTFGINTEAEIFSGCYREIRNRHSEREQDDMSLYNTETIIETQ--MTEIY 1217
Query: 1014 SAFRKEFRQVFEKMNSDF---------ELSDNEKNVLYE----------QKASAWYQVTY 1054
+R++F F + + + +SD+EK+VL KA A+Y+V Y
Sbjct: 1218 RKYREQFFAEFLEGENAYMRLTEVENSRMSDDEKDVLRRVCREPNNKMMAKAVAYYRVCY 1277
Query: 1055 HREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
+K+ D LSFAWIA D L ++ K
Sbjct: 1278 --AAAQKTGD----------QKLSFAWIAYDILNTVRQK 1304
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 146/480 (30%), Positives = 233/480 (48%), Gaps = 55/480 (11%)
Query: 459 ILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAA 517
+L G ++ G Y+F S++QL+ + +F++ E + N +G+F+ K +AK A
Sbjct: 125 LLRTGISIQGVHYNFYGHSNSQLKSRTCFFYAGSPEEISRKV-NDLGDFSKMKTVAKKAK 183
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLDG 574
R+ L FS+ + IPP V+ ++PDI+ Y+F+DG G I+P+LA E+A+ I+ +
Sbjct: 184 RISLLFSTGSVAMLIPPERVE-DIPDIETADYIFTDGCGLISPNLARELARRDRIIFRNR 242
Query: 575 SPPPSAYQIRYAGYKGVV---ACWPAKDDG------IRMSLRGSMKKFKSCHT-SLEICS 624
PS +QIRY GYKGVV P + I + LR SMKKF S +
Sbjct: 243 RYTPSVFQIRYRGYKGVVEVDQTMPRPKNKSSDAPPIWLKLRKSMKKFSGGDDYSFSVVE 302
Query: 625 WTR-FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQ 683
+++ + G+LN + I LLS L ++ + F Q L AF L S A
Sbjct: 303 YSKPYTYGYLNDESILLLSALGITHKTFHQKQNEHFQFLEEATRDPRAAFRFL--SYANM 360
Query: 684 GNTAAIMLSAGFKPQTEPHLQGMLTYELGEL----KECQCFIQVSESSLE-------NCF 732
A +L A + ++ ++ E G++ + +C I + +S L +C
Sbjct: 361 PEMAEKILMADNVEHAQSKVKALVKAEYGKMLNKRDDQKCRILIPQSRLLFGVCDAWDCL 420
Query: 733 SKHG------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
K G + F + + + V++ +NPCL PGD++ V+RPEL HL DC+VF
Sbjct: 421 -KEGECAVKVTLFEDGQPAALKGMEVLVTRNPCLHPGDMQKFRVVERPELAHLTDCIVFS 479
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA---KPLT------ 837
+G RP + SG DLDGD ++V WD+++I PS S P EA K +T
Sbjct: 480 SRGRRPAADLMSGGDLDGDTFFVCWDKSVI-PSTMSEPAKYPGAREAISFKAITDDDRLV 538
Query: 838 --CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
N+ +LG++ ++ A G C L +L + VD G I+ +P L+
Sbjct: 539 YFAKYNNMSLGRVKKLYLAWA--RARGPMAPECQELNRLFSQCVD----GTIIRIPPKLE 592
>gi|336273462|ref|XP_003351485.1| hypothetical protein SMAC_00026 [Sordaria macrospora k-hell]
Length = 1226
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 169/591 (28%), Positives = 262/591 (44%), Gaps = 102/591 (17%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV F +E Q D+ NS +++R K +L+ G ++ GR
Sbjct: 446 DHFLRVQFGEEDGQ----------------DLFFNSTVSMDVIYQRFKDVLTKGISVGGR 489
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVL----DIKNWMGEF-TAKNIAKYAARMGLCFS 524
Y FL FS + LR HS W + VL +I +G+F ++ A+ AAR+G FS
Sbjct: 490 VYRFLGFSHSSLRAHSLWLSAPFIHNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFS 549
Query: 525 STHATVEIPPTEVDHELP-----DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPS 579
T +V + DH + D+KR VFSDG+GKI+ A+EV P+
Sbjct: 550 ETPYSVSLH----DHGIAVIRQNDVKRGKRVFSDGVGKISQG-ALEVIHREIPASKGYPN 604
Query: 580 AYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEICSW-TRFQPGFLNRQI 637
Q+R+AG KG++A A+ G ++ +R SM+KF+S LEIC ++ P LNRQ+
Sbjct: 605 CLQVRWAGAKGMLAL-DARLPGRQICIRDSMEKFRSHDEEHLEICDMASKPIPLMLNRQM 663
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKP 697
I +L + + F +Q +L + + L C L K
Sbjct: 664 IKILEDMGAPAKWFVRLQEKELQRLRAITNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKM 723
Query: 698 ----QTEPHLQGM----LTYELGELKE---------CQCFIQVSESSLEN------CFSK 734
+ + L+G+ + EL LK F + E+ L +
Sbjct: 724 NIDYRKDQFLRGIVESVVLRELRLLKHKARIPVPRGITLFGVMDETGLLREGEVYVTYET 783
Query: 735 HGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDR 791
RF + +G VV+ ++P L PGD++I + V P H L +C+VF Q G+R
Sbjct: 784 VDDRFKDPP----TSGSVVVTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQNGER 839
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKK--SCPPMECTPAE----------AKPLTCH 839
++ SG DLDGD + V WD+ ++ + + TP E A
Sbjct: 840 DLPSQLSGGDLDGDTFNVIWDQKIVSKLETFAAADYPRVTPRELNREIESKDMADFFVEF 899
Query: 840 VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY 899
+ +LG I H++ AD + G DE+C+ LA+L + AVD K+G V + +P +Y
Sbjct: 900 MKADHLGVIAVRHMILADVRDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPRPPRY 959
Query: 900 -PDF----------MEIEE---------------YQTYKSNKILGRLYRQI 924
PD +++EE Y+ Y S K+LG+LYR +
Sbjct: 960 RPDLPDVKIHDKSKIDLEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYRAV 1010
>gi|342878783|gb|EGU80072.1| hypothetical protein FOXB_09347 [Fusarium oxysporum Fo5176]
Length = 1277
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 186/677 (27%), Positives = 292/677 (43%), Gaps = 146/677 (21%)
Query: 368 ECLIKNPKLNE--GPKNIDDIAEVRRLVITPTKAYWFLESKDVADR-----------FLR 414
E +NPK + G K D + + ++TPT+ D +R FLR
Sbjct: 416 EARAENPKRDRIYGVKIPDHQIYIFKAMVTPTRVLLSGPEPDSKNRVLRKYHENNDYFLR 475
Query: 415 VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFL 474
V F +E Q +N + P V + +F R + ++ +G + GR++ FL
Sbjct: 476 VLFCEEDGQDLNFH-------PKVDN---------EPIFARFRHVMDEGITIAGRKFDFL 519
Query: 475 AFSSNQLRDHSAWFFSKVGETSV-----LDIKNWMGEFTAKNI-AKYAARMGLCFSSTHA 528
FS + LR HSAWF + +++ I +G+F+ + AK AAR+G FS T
Sbjct: 520 GFSHSSLRSHSAWFSAPFTDSNFERQTPAAILQALGDFSEIRVPAKCAARIGQAFSETPY 579
Query: 529 TVEIPPTEVDHE-LPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRY 585
+ I T + H +PD+K VFSDG+G I+ + E+ L + + P + QIR+
Sbjct: 580 AIPIFETGICHRFIPDVKSEDGTRVFSDGVGTISREALEEIWPYLSMRAAAP-TCLQIRW 638
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH-TSLEIC-SWTRFQPGFLNRQIITLLST 643
G KG+++ + + SM KF S L IC + ++ LNRQ+I +L
Sbjct: 639 GGCKGMLSLDTRLKGRVFCIRQESMMKFPSDDLRELGICDASSKPLRLVLNRQMIKILED 698
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA------AIMLSAGFKP 697
+ +++ F+ +Q + A ++L + A+ NT+ AI ++ G P
Sbjct: 699 MGTTNDWFFRLQNN--------------ALDILRNATADATNTSYFLDYQAIGVNMGL-P 743
Query: 698 QTEPHLQGM-----------------LTYELGELKE---------CQCFIQVSESSL--- 728
+ L+ M + EL LK F + E+
Sbjct: 744 KLVKQLEKMGIDYRRDKFLKSAVEHVVFRELRLLKHKARIPVDKGVTLFGVMDETGFLDA 803
Query: 729 ENCF----SKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL---CD 781
+ F HG + +G +++ ++P L PGD++I+ V P+ H L +
Sbjct: 804 DEVFVTYDKTHGVYRGRRINSTLKDGQIIVTRSPALHPGDIQIVNQVTPPQGHSLRSLQN 863
Query: 782 CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN 841
C+VF QKG R + SG DLDGDLY + WD + +P P + + KPL V
Sbjct: 864 CIVFSQKGKRDLPSMLSGGDLDGDLYNIIWDPDALP--DNYFLPADYPRVKPKPLDRPVK 921
Query: 842 HQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV 888
Q+ LG I HVV AD E G +CI LA + +TAVD KTG V
Sbjct: 922 PQDIADFFVDFMRTDILGMIATRHVVLADYHEQGTTHPDCISLAGMHSTAVDFSKTGIPV 981
Query: 889 TMPSHLK-PKKYPDFME----IEEYQT--------------------------YKSNKIL 917
+ + K P PDF+ ++ Y+ Y+S+KIL
Sbjct: 982 DVKALPKNPPFRPDFLAAAPPLKTYEKGQIAHLRDDDEDDNADDGMARYKAKYYESDKIL 1041
Query: 918 GRLYRQI--KGAYDENI 932
GRLYR + K +DE+I
Sbjct: 1042 GRLYRNVDEKKIWDEDI 1058
>gi|85110327|ref|XP_963405.1| hypothetical protein NCU08435 [Neurospora crassa OR74A]
gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa]
gi|28925084|gb|EAA34169.1| predicted protein [Neurospora crassa OR74A]
Length = 1351
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 183/653 (28%), Positives = 291/653 (44%), Gaps = 141/653 (21%)
Query: 386 IAEVRRLVITPTKAYWF---LESKDV--------ADRFLRVTFMDEGLQTMNANVLSYYV 434
+ ++ R ++TPT+ LE+K+ D FLRV F +E Q
Sbjct: 411 LTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFAEEDGQ----------- 459
Query: 435 APIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF---FSK 491
D+ NS +++R K +L++G ++ GR Y FL FS + LR HS W F
Sbjct: 460 -----DLFFNSAVSMDAIYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIY 514
Query: 492 VGETSVL-DIKNWMGEFTAKNI---AKYAARMGLCFSSTHATVEIPPTEVDHELP----- 542
G+ + +I +G+F +NI A+ AAR+G FS T +V + DH +
Sbjct: 515 DGKLQLASNIIEDLGDF--RNIMSPARRAARIGQAFSETPYSVSL----YDHGIDVIRQR 568
Query: 543 DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
D+KRN VFSDG+G I+ A+EV + P+ Q+R+AG KG++A A+ G
Sbjct: 569 DVKRNERVFSDGVGIISQG-ALEVIHREIPESKGYPNCLQVRWAGAKGMLAL-DARLTGR 626
Query: 603 RMSLRGSMKKFKSC-HTSLEICSW-TRFQPGFLNRQIITLLSTLNVSDEIFWTVQ----- 655
++ +R SM+KF+S LEIC ++ P LNRQ+I +L + + F +Q
Sbjct: 627 QICIRDSMEKFRSRDEEHLEICDMASKPIPLMLNRQMIKILEDMRAPAQWFLELQEKELQ 686
Query: 656 ---------ASMASKLNLMLVASDVAFEVLTASCAE-----------QGNTAAIMLSA-- 693
++A+ L L V V + +G A++L
Sbjct: 687 RLRAITDNVQNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELR 746
Query: 694 GFKPQTE-PHLQGMLTY----ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVI 748
K + P G+ + E G L+E + ++ F RF +
Sbjct: 747 LLKHKARIPVPYGVTLFGVMDETGLLREGEVYV---------TFETVDGRFKDPP----T 793
Query: 749 NGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGD 805
G VV+ ++P L PGD++I P H L +C+VF Q G+R ++ SG DLDGD
Sbjct: 794 AGPVVVTRSPALHPGDIQIAHNAIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGD 853
Query: 806 LYYVTWDENLIPPSKK-------SCPPMECT-PAEAKPLTC----HVNHQNLGQICNAHV 853
+ V WD++++ + P++ E+K + + +LG I H+
Sbjct: 854 TFNVIWDQSIVATLRTFAAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHM 913
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM--------- 903
+ AD G D +C+ LA L + AVD K+G V + +P Y PDF+
Sbjct: 914 ILADERNEGTLDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIH 973
Query: 904 -----EIEE---------------YQTYKSNKILGRLYRQI--KGAYDENISV 934
++EE Y+ YKS+KILGRL+R + K + +NI +
Sbjct: 974 DKSTIDMEEQYLRQDDDDGDDTPRYKYYKSDKILGRLFRAVDEKKIWTKNIKL 1026
>gi|345563096|gb|EGX46100.1| hypothetical protein AOL_s00110g264 [Arthrobotrys oligospora ATCC
24927]
Length = 1279
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 165/573 (28%), Positives = 256/573 (44%), Gaps = 75/573 (13%)
Query: 389 VRRLVITPT-----------KAYWFLESKDVADRFLRVTFMDE--GLQTMNANVLSYYVA 435
+ R+ ITPT K E D + FLRV+ ++E G + V Y+
Sbjct: 463 IHRMSITPTGMFPGGPNLEPKNRVLREYHDYLNHFLRVSLVEEDGGDLRFESGVDGKYIY 522
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGE- 494
G F S+ + GR + FL FS + LR H+AWF + +
Sbjct: 523 --------------DGRFLPFLMPESNLLKIAGRTFKFLGFSQSSLRSHTAWFMATISTP 568
Query: 495 ---TSVLDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIK----R 546
+V + +G+F + I K AAR+G F+ T A ++I + + IK
Sbjct: 569 RRTITVDGVIERLGDFKSIKIPGKCAARIGQAFTDTVANIKIDDFMIAQKRDIIKIAPGG 628
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSL 606
Y FSDG G ++ L + + + P P+ +QIR+ G KGVVA + D I + L
Sbjct: 629 KKYTFSDGCGTVSKPLIELIWKKGEFTSDPKPTVFQIRFRGAKGVVALDSTQRDPI-LCL 687
Query: 607 RGSMKKFKSCHTSL-EIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNL 664
SM KF + EIC S+T+ P +LNR II +L V + F +Q + L
Sbjct: 688 YDSMVKFDGLKNKVFEICRSFTKPLPFYLNRCIIKILEDRGVPIKNFMDLQGRALATLRE 747
Query: 665 MLVASDVAFEVLT-ASCAEQGNTAAI---MLSAGFKPQTEPHLQGMLTYE-LGELKECQ- 718
D A L + Q N + + + G+ + + L+ ++ + L L++ +
Sbjct: 748 RTFTPDSAAHFLDYQNRCTQANIPFLIRELFALGWDYKEDNFLRKVVEFTMLTTLRDMKY 807
Query: 719 -CFIQVSESSL------ENCFSKHGSRFA----ETKKLQVINGFVVIAKNPCLRPGDVRI 767
IQV + E + + G + E K + G V I +NP L PGD++I
Sbjct: 808 RARIQVDKGFTLVGVLDETGYLQEGEIYCPIQREGGKREAHRGVVAICRNPALHPGDIQI 867
Query: 768 LEAVDRP---ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+ AV+ P L L +C+VF Q+G R + SG DLDGD++++ W+ +L+P + S
Sbjct: 868 VTAVEVPYDSPLRDLMNCVVFSQRGQRDLPSMLSGGDLDGDIFHIWWEPSLMP--RFSSA 925
Query: 825 PMECTPAEA-------------KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILL 871
P + EA K + + LG I AH+V AD+ G C+
Sbjct: 926 PSDFPAVEALNYDRDVTQADIGKFFLDFMENDKLGVISVAHMVLADQEPAGVRSAACLTC 985
Query: 872 AKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM 903
A++A+ AVD PKTG V M + PK PDF+
Sbjct: 986 ARMASQAVDFPKTGVPVRMSELPRTPKARPDFL 1018
>gi|408389379|gb|EKJ68835.1| hypothetical protein FPSE_11001 [Fusarium pseudograminearum CS3096]
Length = 1277
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 171/636 (26%), Positives = 270/636 (42%), Gaps = 150/636 (23%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D FLRV F +E Q D+ + ++ + + ++ G +
Sbjct: 469 DYNDYFLRVLFCEEDGQ----------------DLRFHPKVDNEPIYSQFRRMMDHGIQI 512
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGE-----TSVLDIKNWMGEFTAKNI-AKYAARMG 520
GR++ FL FS + LR HSAWF + + S I +G+F + AK AAR+G
Sbjct: 513 AGRKFDFLGFSHSSLRSHSAWFSAPFVDKDHQLQSPEAILQALGDFRDIRVPAKCAARIG 572
Query: 521 LCFSSTHATVEIPPTE-VDHELPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
FS T V I V +PD+K VFSDG+G I+ + + L ++ S
Sbjct: 573 QAFSETPYAVPISENNIVPRYIPDVKSEDGSRVFSDGVGTISQEALESIWPYLSMN-SAA 631
Query: 578 PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEICSWTRFQPG--FLN 634
P+ QIR+ G KG+++ + + + SM KFKS T L IC T +P LN
Sbjct: 632 PTCLQIRWGGCKGMLSLDTRLEGKVFCIRQESMMKFKSEDTGELGICD-TASKPLRLVLN 690
Query: 635 RQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA------A 688
RQ+I +L + DE F+ +Q + A ++L A+ NT+ A
Sbjct: 691 RQMIKILEDMGTRDEWFFELQNN--------------ALDILRNVTADATNTSSFLEHHA 736
Query: 689 IMLSAGFKPQTEPHLQGM-----------------------------------------L 707
I ++ G P+ L+ M +
Sbjct: 737 IGINMGL-PRLVKQLEKMDIDYRRDKFLKAAVEHVVLRELRLLKHKARIPVDNGVTLFGI 795
Query: 708 TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRI 767
E G LKE + ++ ++ +G K + +G +++ ++P L PGD+++
Sbjct: 796 MDETGFLKEGEVYVTYDKT--------YGRNNGRGIKSTLTDGEIIVTRSPALHPGDIQL 847
Query: 768 LEAVDRPELHHL---CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
++ V P+ H L +C++F QKG R + SG DLDGD+Y + WD +P +
Sbjct: 848 VKQVTPPQGHSLRSLQNCIIFSQKGKRDLPSMLSGGDLDGDIYNIIWDPEAMP--SRVFR 905
Query: 825 PMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILL 871
P + +PL V ++ LG I HV+ AD ++ G+ D +CI L
Sbjct: 906 PADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIATRHVILADYNDLGSIDRDCIAL 965
Query: 872 AKLAATAVDSPKTGKIVTMPSHLK-PKKYPDF---------------------------- 902
A+L +TAVD KTG V + + + P+ PDF
Sbjct: 966 AELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPLKLYDKGQLAHIGEDDEMDNAD 1025
Query: 903 -MEIEEYQTYKSNKILGRLYRQI--KGAYDENISVS 935
M + Y+S KILG+LYR + K +DE+I S
Sbjct: 1026 DMARTKTNYYQSEKILGQLYRNVDEKKIWDEDIHRS 1061
>gi|452838162|gb|EME40103.1| hypothetical protein DOTSEDRAFT_138071 [Dothistroma septosporum
NZE10]
Length = 947
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 189/659 (28%), Positives = 285/659 (43%), Gaps = 146/659 (22%)
Query: 381 KNIDDIAEVRRLVITPTKAYWFLESKDV-------------ADRFLRVTFMDEGLQTMNA 427
K I V +++ITP Y LE D D F+RV F DE
Sbjct: 131 KRYAHINLVHKIIITPAGTY--LEGPDAEPTNRVLRRYHHSTDHFVRVIFQDEDR----- 183
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
+P+ D ++ Q R K +L +CGR +SFL FS + LR S W
Sbjct: 184 -------SPMRHDPRTD---QSQIYHMRFKGVLDGSVLICGRAFSFLGFSHSSLRSQSCW 233
Query: 488 F----FSKVGETSVLD-IKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHEL 541
F SK G + + +G+F+ + AK AAR+G F+ T+A+V++ P EV EL
Sbjct: 234 FSAPMVSKQGSLVFAEQVIKELGDFSKIRVPAKCAARIGQNFTDTNASVKLRPEEV-FEL 292
Query: 542 PDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDG 601
P+++RNG FSDG+G I+ L V + P+A QIR+ G KG+VA ++ G
Sbjct: 293 PNVERNGRDFSDGVGTISERLLQSVHRRYGSKKLLKPTALQIRFQGSKGMVA-LDSRLPG 351
Query: 602 IRMSLRGSMKKFKSCHT-SLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQ---- 655
R+ +R +MKK+++ T LEIC R P LNR I ++ L F +Q
Sbjct: 352 KRLMIRPNMKKYETAATWDLEICGAAFRPLPMVLNRPFIKVMEDLGTPISTFMDLQNAAM 411
Query: 656 ---------------------ASMASKLNLML-----VASDVAFEVLTASCAEQGNTAAI 689
A A++++ ++ + D + S E A
Sbjct: 412 VHLQRMTASCINTAIFLDDSEACRATRMSELIRYLGQIGLDYHHDHFMYSVVEMA-VVAK 470
Query: 690 MLSAGFKPQTEPHLQGMLTY----ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKL 745
+ +K + P QG+ Y E G L + ++ V+E + E K
Sbjct: 471 LRDIKYKGRI-PVEQGVTLYGIMDETGYLGPREIYV-VTEKA-------------EGGKK 515
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDL 802
V+ +++ ++P L PGD++++ AVD P+ L L + +VF + GDR ++ G DL
Sbjct: 516 VVVANDIIVTRSPALHPGDMQVVNAVDVPQTSPLKRLSNVVVFSKHGDRDLPSQLGGGDL 575
Query: 803 DGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQN-------------LGQIC 849
DGDLY + WD L P ++ P + A L V ++ LG IC
Sbjct: 576 DGDLYNIIWDPKLRP--MRTFQPADYPRVSAVQLDRDVVRKDMSDFFVTFMESDVLGMIC 633
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG---KIVTMPSHLKPKKYPDFM--- 903
H+ AD+ G D +CI LA +A+TAVD KTG I +P + + K PDFM
Sbjct: 634 TTHLQLADQRSAGVLDPDCIKLAGMASTAVDFSKTGIPVNIKDIPRYTRVK--PDFMAPS 691
Query: 904 -----------------------------EIEEYQTYKSNKILGRLYRQI-KGAYDENI 932
E + Y+S K LG LYR I +G + N+
Sbjct: 692 PRVVVSDGGFLDFEEDDDGEDDAFEGLDTERRRTRFYRSEKALGHLYRAIDEGKFLHNM 750
>gi|296416873|ref|XP_002838094.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633999|emb|CAZ82285.1| unnamed protein product [Tuber melanosporum]
Length = 1218
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 181/634 (28%), Positives = 286/634 (45%), Gaps = 130/634 (20%)
Query: 386 IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVLSYYV 434
+A V + ITP Y+F + +R F+RVTF +E + + + + V
Sbjct: 437 MALVHHVSITPAGCYFFGPLPEPQNRVLRKYPDHHEYFIRVTFCEEDGEPL---LFQHKV 493
Query: 435 --APIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV 492
+PI K N F + LS+G + GR++ FL FSS+ LR S WF +
Sbjct: 494 DQSPIYK----NQF----------RFYLSEGITIAGRKFEFLGFSSSSLRTQSCWFMAPF 539
Query: 493 G-ETSVLD---IKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN 547
+ LD + + +G+F++ KYAAR+G FS T+ ++++ E + E+PD+ RN
Sbjct: 540 YLDGKYLDPKIVTSRLGDFSSITCPGKYAARVGQAFSDTYGSIDV-RAEHEVEIPDVVRN 598
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLR 607
G FSDG+G I+ L V + + P+ +QIR+AG KGVV+ + G + LR
Sbjct: 599 GRTFSDGVGTISQQLLDRVWRESESLRKTRPTVFQIRFAGAKGVVSL-DTRLVGDKFCLR 657
Query: 608 GSMKKFK-SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQ----------- 655
SM KF+ S +EIC+ + P +LNR +I +L + V + F T+Q
Sbjct: 658 PSMIKFRGSSDRKIEICNSADWLPMYLNRPLIKVLEDIGVFESTFMTLQKEAIEDLRQST 717
Query: 656 ---ASMASKLNLMLVAS-------------DVAFEVLTASCAEQGNTAAIMLS-AGFKPQ 698
A+ A+ L +AS ++ F EQ +++ S K +
Sbjct: 718 TSVANAANFLKRQRIASTAIRLPWVIESLNNLGFNFRDDHFLEQAFELSLITSLRSLKHK 777
Query: 699 TE-PHLQGM----LTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVV 753
P +GM + E G L+E Q ++ V S I G V+
Sbjct: 778 ARIPVKKGMTLVGVMDETGYLQEGQIYVTVQARDKSTSES--------------IAGRVL 823
Query: 754 IAKNPCLRPGDVRILEAV-------DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
I ++P PGDV++ A+ D P L L +C+ FPQ+G+R + DL +
Sbjct: 824 ITRSPVHHPGDVQMALAIGTNQLPPDSP-LRALRNCVAFPQRGERDMPSMLGAPDLYNII 882
Query: 807 Y------YVTWDENLIP--PSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADR 858
Y T+D P P+K P++ + L N+ LG I + H++ AD+
Sbjct: 883 YDARFSLKTTYDPAEYPKVPTKDLGRPVKTSDIVDFFLEFMENNL-LGMISSRHLITADK 941
Query: 859 SEYGAFDENCILLAKLAATAVDSPKTGKIVTM----------PSHLKP------KKYPDF 902
G +C+ LA+LA+TAVD PKTG V+ P + P K+ P+F
Sbjct: 942 KVEGVHHPDCLKLAELASTAVDFPKTGIKVSRSDFPKATFAKPDFMAPGPRILIKRGPEF 1001
Query: 903 MEIEEYQT------------YKSNKILGRLYRQI 924
+E + Y+S K+LG+LYR+I
Sbjct: 1002 VEEDVVPDDDDDDEDTPTLYYESEKVLGKLYREI 1035
>gi|310795671|gb|EFQ31132.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1313
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 178/660 (26%), Positives = 285/660 (43%), Gaps = 134/660 (20%)
Query: 379 GPKNIDDIAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNA 427
GP + +V + ++TPT+ + +R F+RVTF DE +
Sbjct: 432 GPATANHHVQVFKAMVTPTRITLHGPEPEPLNRVLRRFPDHTSYFMRVTFCDEDGGDL-- 489
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
+ P V S+ Q +F R + +L+ G + GR Y FL FS + LR HSAW
Sbjct: 490 -----FFNPRV------SYDQ---IFDRYRKVLNGGIPIAGRVYQFLGFSHSSLRSHSAW 535
Query: 488 FFSK-VGETSVL----DIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDH-E 540
F + V T L +I +G+F I AK AAR+G FS T A + + + H +
Sbjct: 536 FSAPFVDSTGKLQLYANIIKSLGDFDHIQIPAKCAARIGQAFSETPAFINLSEHRIRHWD 595
Query: 541 LPDIKRNG----YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWP 596
+PD+K + VFSDG+G I+ + A+E+ S P+ QIR+ G KG+++
Sbjct: 596 IPDVKSHDGKIQRVFSDGVGTISQE-AIELVWPRLPQRSLIPTCLQIRWGGVKGMLSL-E 653
Query: 597 AKDDGIRMSLRG-SMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWT 653
++ G + +R SM+KF S +LEIC + ++ LNRQ+I ++ L V F
Sbjct: 654 SRLSGRSICIRRESMEKFPSTDVQNLEICDAASKPLKLVLNRQMIKIMEDLGVDKNFFLR 713
Query: 654 VQASMASKL--------------NLMLVASDVAFEVLTASCAEQG--------------N 685
+Q + +L +L V S S + G +
Sbjct: 714 LQKNELDRLRAVTADAYNTGTFLHLQGVGSAFFLPTFIKSLEKYGIDYRRDDFLRAVVES 773
Query: 686 TAAIMLSAGFKPQTEPHLQGMLTY----ELGELKECQCFIQVSESSLENCFSKHGSRFAE 741
T L P QG + E G LKE + ++ C+ + S
Sbjct: 774 TVLRELRLLKHKARIPVPQGATLFGVMDETGFLKEGEVYV---------CYDTYKSPGKA 824
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEAS 798
+ + +G V++ ++P L PGD+++ P H +L +C+ F Q G R ++ S
Sbjct: 825 PTERSLRDGRVLVTRSPALHPGDIQLANMRTPPPGHPLRNLRNCVAFSQHGQRDLPSQLS 884
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQN-------------L 845
G DLDGDLY + WD+ +P + C + +PL V + L
Sbjct: 885 GGDLDGDLYNIIWDKQAMP--RWICKAADYPRVTPEPLGRPVTRDDMANWFVDFMKSDVL 942
Query: 846 GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM--------------- 890
G I H++ +D+ + G NC+ LA+L +TAVD KTG V
Sbjct: 943 GLIATRHLILSDQDQEGTMGRNCLKLAELHSTAVDFSKTGIAVEQREIPKAPRFRPDFLA 1002
Query: 891 ---PSHLKPKKYPDFM------------EIEEYQTYKSNKILGRLYRQI--KGAYDENIS 933
P+ L + + DF+ + ++ YKS ILG+LYR + K +D++I+
Sbjct: 1003 PAPPAQLYDRTHIDFIDEDEAVDDDEDAQGPNHKYYKSENILGQLYRNVNEKQIWDQDIN 1062
>gi|341877528|gb|EGT33463.1| hypothetical protein CAEBREN_18731 [Caenorhabditis brenneri]
Length = 1708
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 234/993 (23%), Positives = 398/993 (40%), Gaps = 260/993 (26%)
Query: 306 FEIMFLVNAVMHKGILNQHQLS------DSFFDLLR---------------CQPREVIVT 344
F +L+ A+ +G + + QL F D++R C +
Sbjct: 343 FAYTYLIEALFSRGTIVKDQLLIDQNRWRRFLDIIRRHVNDDINNDVFQRHCLCESALED 402
Query: 345 ALKHIYSYKR--PVFDAYEKL-----KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPT 397
L H+ + R + D +E+L K Q + + + EG + R+ ++T T
Sbjct: 403 LLNHVDNQPRVGDLLDVFERLCEARKKSKQSNQLTDEQWKEG------FRKTRKALLTTT 456
Query: 398 KAYWF-----LESKDV------ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
+ + + ++ V R +R T D+ Q M L D+ S
Sbjct: 457 RKIYLAPEMIMSNRAVTGVDHDGTRIIRTTIRDDNFQKMRQYQLG--------DLLSEK- 507
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS---------- 496
V +R+K GF + GR +S+LA S++Q+R+ + + +
Sbjct: 508 -----VMRRLKK----GFVIMGRSFSYLASSNSQMREGGTYHMERFNKKQLDLDYPGIHL 558
Query: 497 ----------VLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHEL-PDI 544
+L + +G+F +I+K AR+G CF+ A + I D+++ PD
Sbjct: 559 RKIPSGYKPKILAYRKKLGKFEKTGSISKAMARLGQCFTQARACIGIEIGNQDYQMVPDA 618
Query: 545 ----KRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAK 598
NG Y+++DG+G I+ LA ++A+ +KL PSAYQIR+ G KG++ P+
Sbjct: 619 IGGKNANGAPYMYTDGVGMISARLAQKIAKSMKLPNGFVPSAYQIRFRGLKGMLVVDPSL 678
Query: 599 DDGIR----MSLRGSMKK-------------FKSC--------HTS--------LEICSW 625
D+ + RG M+K FK H+S +E+ W
Sbjct: 679 DNKADYFKDIYRRGLMRKETNSEEIDLAPYTFKCLFRESQMKFHSSKGGKDKWPIELVKW 738
Query: 626 TRFQPGFLNRQIITLL------STLNVSDEIFWTVQASMASKLNLM---LVASDVAFEVL 676
+ P LNR I +L +L+ I ++ + +++ ++ D L
Sbjct: 739 SSPTPVTLNRPFINILDQVSALQSLDCHKRICGRIEELLDIEMDSFTDCIINEDKCRSKL 798
Query: 677 TASCAEQGNTAAIMLSAGFKPQTEPHLQGML----------------------------- 707
+ + ++ GF TEP + ++
Sbjct: 799 EG-MPRRVHFPSLWRRNGFSLCTEPFFRALIKAAIDFSMMRLLKKVNIPIPSNVGRSMFG 857
Query: 708 -TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVR 766
T E G L+ Q F+Q +E N +KH S + +++ G +++ K P + GDVR
Sbjct: 858 VTDETGLLQYGQVFVQYTE----NVNNKHPSGVSG----KILKGPLMVTKFPSMCEGDVR 909
Query: 767 ILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
+ EAVD PEL HL + +VFPQ G R +E +GSDLDGD Y V WD L ++
Sbjct: 910 MYEAVDIPELRHLENVIVFPQNGPRSMPDEMAGSDLDGDEYAVIWDPFLFFERNETAFAY 969
Query: 827 ECTPAEAKPLTC-------------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAK 873
C K L +N +++G H+ +D +YG + C +LA+
Sbjct: 970 -CNDKPEKKLNIDEMDEGMNVFYAEFMNQEDVGITATNHLHQSD--QYGINSKVCNILAE 1026
Query: 874 LAATAVDSPKTGKIVTMPSHL-----------------KPKKYPDFM--EIEEYQTYKSN 914
A +D K+G PS L K ++ PDF QTY+S+
Sbjct: 1027 KNAMLLDYSKSG---VAPSPLTFNWDKHPETKKWVPPEKSERKPDFANNRFSMNQTYQSS 1083
Query: 915 KILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQL 974
++LG L+R+++ D ++ S+E V + D L G + + A Q Y+G L
Sbjct: 1084 RLLGTLHRELRSVNDV-VATSAE---KQVPLVLDDLLVWTGWEQYKSVAEAQLLRYNGSL 1139
Query: 975 NGLLGQYNVNR---------KEFRHIWSMPKYNSRKQ----GELQERLKHSYSAFRKEFR 1021
++ + VN +E R+ S + + Q ++ ++ Y FR EF
Sbjct: 1140 RSIMETFGVNTEAEVFSGYYREIRNRQSDKEQDDMSQYCTENVIETQVTALYRKFRAEFF 1199
Query: 1022 QVFEKMNSD------FELSDN-----EKNVLYE----------QKASAWYQVTYHREWVK 1060
+ F + D + +N EK+VL KA A+Y+ Y
Sbjct: 1200 EEFAEHTPDSPAYMRLTVPENERVWEEKDVLRRVCRKPSNAMMAKAVAYYRTCYQ----- 1254
Query: 1061 KSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
+ +E+G + LSFAW+A D L ++ K
Sbjct: 1255 ---NAVEKGDRK----LSFAWLAYDILNTVRGK 1280
>gi|405952888|gb|EKC20645.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 1226
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 165/301 (54%), Gaps = 32/301 (10%)
Query: 389 VRRLVITPTKAYWFLESKDV----------ADRFLRVTFMDEGLQTMNANVLSYYVAPIV 438
V R+++TPTK FL + V D F+RV + DE + MN V +
Sbjct: 930 VGRMILTPTKTV-FLPKEPVFQNRILREYGPDFFIRVVYRDEDFEKMNT------VQSCL 982
Query: 439 KDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVL 498
D V K +K L DGF + R Y FL S++QLR+HS WFF + +
Sbjct: 983 LD----------DVLKIMKQFLKDGFRIRNRHYEFLGCSNSQLREHSFWFFHPHDDITSE 1032
Query: 499 DIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGK 557
I+N GEF+ + +A Y +R GLCFSST TV++ + + ++ D+K++ Y F+DGIG+
Sbjct: 1033 SIRNNSGEFSKDRCVASYVSRFGLCFSSTRRTVDVDESCLIYD-DDVKKDEYCFTDGIGR 1091
Query: 558 ITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPA-KDDGIRMSLRGSMKKFKSC 616
I+ LA +VA L + SP PSA+QIR+ G KGVVA P DD + +R SM KF+S
Sbjct: 1092 ISTKLAKKVAAELHI--SPIPSAFQIRFGGCKGVVAQDPTLGDDADVLVIRKSMIKFESK 1149
Query: 617 HTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
+LEI TR LNRQ+ITLLS L + DE+F +Q M + ML+ VA L
Sbjct: 1150 SNNLEILGETRPGRLHLNRQVITLLSGLGIPDEVFLGLQEKMLLDIADMLLYDKVALLAL 1209
Query: 677 T 677
+
Sbjct: 1210 S 1210
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 29/221 (13%)
Query: 387 AEVRRLVITPTKAYWFLESKDVADR---------FLRVTFMDEGLQTMNANVLSYYVAPI 437
+ V R+V+TPT++ + + +R F+RV F DE + ++ +
Sbjct: 369 SRVARMVLTPTRSLFLPKEPMFQNRIVREYGEDFFIRVVFRDEDFEK---------ISTV 419
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
D N + +R+K+ DGF + R Y FL S++QLR+HS WFF + +
Sbjct: 420 QSDAVEN-------ILERMKTFFEDGFQIQTRDYEFLGCSNSQLREHSFWFFHPRDDITS 472
Query: 498 LDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
+I+N GE T + +A Y +R GLCFSST TV++ V + D++ + Y F+DGIG
Sbjct: 473 ENIRNSSGELSTERCVASYVSRFGLCFSSTKKTVDVDKGCVQY-TDDVQNDEYCFTDGIG 531
Query: 557 KITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPA 597
+I+ LA +V+ +L+ SP PSA+QIR+ G KGVVA P
Sbjct: 532 RISTKLAEKVSN--ELNISPVPSAFQIRFGGCKGVVAQDPT 570
>gi|358397216|gb|EHK46591.1| hypothetical protein TRIATDRAFT_317554 [Trichoderma atroviride IMI
206040]
Length = 1395
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 180/632 (28%), Positives = 275/632 (43%), Gaps = 133/632 (21%)
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
+D F+RV F DE Q D+ S + T VF+R + IL DG + G
Sbjct: 587 SDYFMRVIFGDEDGQ----------------DLALTSNVKNTLVFERYRKILKDGIQVAG 630
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKN------WMGEFTAKNI-AKYAARMGL 521
R++ FL FS + LR HSAWF + + S ++++N +G+F+ I AK AAR+G
Sbjct: 631 RKFEFLGFSHSSLRSHSAWFVAAFVDDS-MNLQNNDTIIKSLGDFSDIRIAAKCAARIGQ 689
Query: 522 CFSSTHATVEIPPTEVDHE-LPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
FS T V I ++ E + D+K VFSDG+G I+ D EV L S
Sbjct: 690 AFSETPYAVPILKCGINIEYIDDVKTADGKRVFSDGVGTISWDAMEEVWDHLP-KASSEA 748
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEICSWTRFQP--GFLNR 635
+ Q+R G KG+++ + + + SM KF S T + IC T +P +LNR
Sbjct: 749 TCVQVRLGGIKGMLSLDSRLNGKVICVRKESMMKFPSKDQTEMGICD-TASKPMRTYLNR 807
Query: 636 QIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQ-GNTAAI----- 689
Q I +L + + E F Q LN++ + A T + G TA +
Sbjct: 808 QTIKILEDMGTNSEWFIDQQ---NKALNVLRNVTTTAANTSTFLKNQMVGTTAGLPRLIR 864
Query: 690 -MLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
+ + G + E ++ ++ + E G L+E Q +
Sbjct: 865 YLSTIGIDYRRERFMKKVVDHTILRELRLLKHKARIPVDMGVTLFGVMDETGFLEEGQIY 924
Query: 721 IQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH--- 777
+ +ES H K+ + +G V++ ++P L PGD+++ P+ H
Sbjct: 925 VTFNES--------HDHLQGRVKR-SLKDGTVLVTRSPALHPGDIQLARMTTPPQGHPLR 975
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
+L +C+VF QKG R ++ SG DLDGDLY V WD +IP K+ P + + L
Sbjct: 976 NLKNCVVFSQKGSRDLPSQLSGGDLDGDLYNVFWDPFVIP--KQYFGPADYPRVKPPELD 1033
Query: 838 CHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
V + LG I N H + AD + G +C+ LA++ +TAVD KT
Sbjct: 1034 RAVTRDDIADFFVKFMEADILGIIANRHQMLADYQDEGTLSADCVDLAEMHSTAVDYSKT 1093
Query: 885 GKIVTMPSHLKPKKY-PDF------------------------------MEIEEYQTYKS 913
G V KP + PDF M + +++ YKS
Sbjct: 1094 GIAVRHQDMPKPPRMRPDFLAPAPPTRLFDRGEIDHIGDPNENEDDEDGMGMAKHKYYKS 1153
Query: 914 NKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
KILG LYR + DE +++V PVD+
Sbjct: 1154 LKILGELYRGV----DEKKIWANDVQ-RPVDM 1180
>gi|320593975|gb|EFX06378.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1259
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 176/638 (27%), Positives = 287/638 (44%), Gaps = 116/638 (18%)
Query: 384 DDIAEVRRLVITPTKAYWF---LESKDVADR--------FLRVTFMDEGLQTMNANVLSY 432
+++A + R+ +TPT+ + E K+ R F+RV F DE N + L
Sbjct: 392 ENLAPICRVSVTPTRILLYGPEFEKKNRVLRKFPNQHDCFIRVQFCDE-----NGDSL-- 444
Query: 433 YVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK- 491
+ + + +K V+KR I+ +G + GR Y FL +S + LR HS WF +
Sbjct: 445 ------RLLGRRTSYEK--VYKRFIDIMKNGIQIVGRTYKFLGWSHSSLRAHSMWFTAPF 496
Query: 492 VGETSVLD----IKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD--- 543
+ +T L I + +G+F ++ AK AAR+G FS T V + ++ L D
Sbjct: 497 IDDTGRLQTHLTIISTLGDFAGIRSPAKCAARIGQAFSETPYAVPLSEHKISVMLVDDVK 556
Query: 544 IKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR 603
K +VFSDG+G I+ D A V + + P+ +Q+RYAG KG+++ + G +
Sbjct: 557 SKDGKHVFSDGVGTISLDAAAAVWKYVP-KSKRNPTCFQVRYAGAKGMLSL-DTRLQGSQ 614
Query: 604 MSLRGSMKKFKSCHT-SLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL 662
+ LR SM KF+S T +LEIC + P +LNRQ+I +L ++V + F +Q +L
Sbjct: 615 ILLRPSMIKFESNETENLEICDVAKAMPLYLNRQMIKILEDMSVPRKWFLRLQNDALQQL 674
Query: 663 NLML-VASDVAF-----EVLTASCAEQGNTAAIMLSAGFKPQTEPHL----QGMLTYELG 712
L+ A ++A+ V T+ + L ++ TEP L + ++ EL
Sbjct: 675 RLIASSAYNMAYFLKHQSVGTSIKLHKLLLLTDKLGLDYR--TEPFLRRAAEAVVLRELR 732
Query: 713 ELKECQCF-----IQVSESSLENCFSKHGSRFAETKKLQVING-----------FVVIAK 756
LK I + E F G + + Q + ++++ +
Sbjct: 733 LLKHKARIPVPFGITLFGVMDETEFLAKGQVYVTFETKQGLKPQRFEQPPGHAVYLLVTR 792
Query: 757 NPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
+P L PGD++ + PE H L +C+VF KG R ++ SG DLDGD++ + WD
Sbjct: 793 SPALHPGDIQWACNMIPPEGHPLRELSNCVVFSAKGARDLPSQLSGGDLDGDIFNLIWDR 852
Query: 814 NLIPPSK---------KSCPPMEC-----TPAEAKPLTCHVNHQNLGQICNAHVVHADRS 859
+ P + PP T A+ + +LG I H++ AD+
Sbjct: 853 EVCRPVELKTYRAAEYARVPPQNIWREVQTEDIAQFFIDFMKTDHLGTIATRHMILADQK 912
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM--------------E 904
E G D +CI +A+L +TAVD KTG + + + PDF+ E
Sbjct: 913 EMGTLDSDCIAMAELHSTAVDFSKTGIPADLNELRRASPFRPDFLAPGSLVYVHNKADIE 972
Query: 905 IEEY------------------QTYKSNKILGRLYRQI 924
+E+Y + Y+S K+LG LYR +
Sbjct: 973 LEKYVANNERDVHAEALDGPAHKYYRSEKVLGVLYRAV 1010
>gi|449550827|gb|EMD41791.1| hypothetical protein CERSUDRAFT_147107 [Ceriporiopsis subvermispora
B]
Length = 1211
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 174/623 (27%), Positives = 289/623 (46%), Gaps = 108/623 (17%)
Query: 385 DIAEVRRLVITPTKAYWFLES-------------KDVADRFLRVTFMDEGLQTMNANVLS 431
D + RL++TPT W LE +D D FLRV F+DE N L
Sbjct: 418 DTFDCLRLIVTPTT--WSLEGPFPERFNRVIRTHRDNCDSFLRVAFVDE-------NRLQ 468
Query: 432 YYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK 491
Y +++ + F + +RVK +L +G + GR + FLA+S + LR+H+ WF
Sbjct: 469 YRFD---REVDGSEF-----IRRRVKGLLINGITIAGRHFEFLAYSQSALREHAVWFVKS 520
Query: 492 VGETS---------VLDIKNWMGEFTAKNI---AKYAARMGLCFSSTHATVEIPPTEVDH 539
+ S + + N+ + + I A++AAR+ F++T A+V + E+
Sbjct: 521 FTDASGACVDAPGIIRTLGNFHVNYDPQLIYCPARWAARVSQAFTATDASVSVEAEEII- 579
Query: 540 ELPDIK-RNGYVFSDGIGKITPDLAMEV-----AQILKLDGSPP-PSAYQIRYAGYKGVV 592
L DI+ N +F+DG+G I+ +LA + A+ + P P A+QIR+ G KG++
Sbjct: 580 ILDDIEDSNRRLFTDGVGTISAELAKAIWKELCARRHRNRRRPAYPRAFQIRFGGSKGML 639
Query: 593 ACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPG--FLNRQIITLLSTLNVSDEI 650
+ +G + LR SM KF++ H+ + + +PG +LNR +I LL L V ++
Sbjct: 640 SV-DYTLEGRIICLRRSMIKFEAPHSMVVEVARAFDRPGKYYLNRPLIMLLEGLGVPYDV 698
Query: 651 FWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTEPHLQGM--- 706
F +Q + + + A +L T ++ML A K EP +Q +
Sbjct: 699 FQKLQDDAVQHVEESRGSLETAARLLETHGLGSSFRLTSVML-ALHKLGVEPFMQDVFWR 757
Query: 707 ------LTYELGELKECQCFIQVSES-SLENCFSKHGSRFAETKKLQV------------ 747
+ + L ELK I V + +L HG F E ++
Sbjct: 758 QMMDFAVNHVLRELKH-HARIPVPDGWTLVGVADVHG--FLEEGQIFACIIPTDGAAPIY 814
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRP------ELHHLCDCLVFPQKGDRPHTNEASGSD 801
+ G +I+++P + PGDV+++ A+ +P L + +VF KG RP + G D
Sbjct: 815 LEGPTLISRSPTIHPGDVQVVHAIGKPPPNSPFAKESLRNTVVFSIKGSRPLPSCLGGGD 874
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT--C-----------HVNHQNLGQI 848
LDGD+Y +T L P +++ P AE K L C ++ LG I
Sbjct: 875 LDGDVYNLTTMPELRP--RRTYEPASYAAAEKKLLIRPCTMADVADFVAEYIISDTLGII 932
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS--HLKPKKYPDF---- 902
++ AD+S G D C+LLA L + AVD PK+G+ V + + LK + PD+
Sbjct: 933 AINWLIIADQSVEGIRDPACLLLAALHSDAVDYPKSGRPVPVENIPRLKFRAKPDWNAPE 992
Query: 903 -MEIEEYQTYKSNKILGRLYRQI 924
++ + + Y+S + +G+L+R I
Sbjct: 993 TLKGDAVEFYESQRAIGKLFRSI 1015
>gi|429863873|gb|ELA38280.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1308
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 200/718 (27%), Positives = 301/718 (41%), Gaps = 143/718 (19%)
Query: 326 LSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNE------G 379
LSD LR PRE + I+ V D E LK + E + + G
Sbjct: 374 LSDQALQSLRDGPRECLPFPTHDIHPN---VLDPDEILKFLLEMERRIQAEGDYRSTLYG 430
Query: 380 PKNIDDIAEVRRLVITPTKAYW-----------FLESKDVADRFLRVTFMDEGLQTMNAN 428
P + A V + ++TPT+ + ++ D F+RV F DE
Sbjct: 431 PDVSNHHAWVFKAMVTPTRVTLHGPEMEPLNRILRKHRNHTDYFMRVQFCDED------- 483
Query: 429 VLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
D+ N VF+R K++L+ G + GR Y FL FS + LR H+AWF
Sbjct: 484 ---------GTDLWFNPRVNYEDVFERYKNVLNKGIQVAGRIYQFLGFSHSSLRSHAAWF 534
Query: 489 FSKV----GETSVL-DIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDH-EL 541
+ GE + I +G+F I AK AAR+G FS T A + + +++ +
Sbjct: 535 MAPFVDDSGEMQLYRHIIKSLGDFEHIQIPAKCAARIGQTFSETPAFISLTDSDISAWNI 594
Query: 542 PDIKR----NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVAC--- 594
PDIK + VFSDG+G I+ + A+E+ GS P+ QIR+ G KG+++
Sbjct: 595 PDIKSSIGGDDRVFSDGVGTISRE-ALELIWPRLPRGSLIPTCLQIRWGGVKGMLSLDTR 653
Query: 595 WPAKDDGIRMSLRGSMKKFKSCHT-SLEICSW-TRFQPGFLNRQIITLLSTLNVSDEIFW 652
P + IR R SM+KF S T +LEIC ++ LNRQ+I +L L V ++ F
Sbjct: 654 LPGRVMCIR---RESMEKFPSQDTENLEICGGASKPLKLVLNRQMIKILEDLGVRNDFFL 710
Query: 653 TVQASMASK--------------LNLMLVASDVAFEVLTASCAEQG-------------- 684
+Q + + L++ + + S + G
Sbjct: 711 RLQKTELDRLRAVTADAYNTGTFLHMQGIGLNCFLPSFIKSLDKYGIDYRRDDFLRTVVQ 770
Query: 685 NTAAIMLSAGFKPQTEPHLQGMLTY----ELGELKECQCFIQVSESSLENCFSKHGSRFA 740
N L P +G+ + E G L+E + +I S GS
Sbjct: 771 NVVLQELRLLKHKARIPVPKGVTVFGVMDETGFLREGEVYIAYDTYRRPGRTSIDGS--- 827
Query: 741 ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEA 797
+ +G V++ ++P L PGD+++++ P H +L +C+ F Q G R ++
Sbjct: 828 ------LRDGPVLVTRSPALHPGDIQLVKMRTPPAGHPLRNLRNCIAFSQFGRRDLPSQL 881
Query: 798 SGSDLDGDLYYVTWDENLIPP-SKKSCPPMECTPAEAKPLTCHVNHQN----------LG 846
SG DLDGDLY + WD + +P + K+ TPA + N LG
Sbjct: 882 SGGDLDGDLYNIIWDRDAMPKVTYKAADYPRVTPAALGRTVEREDMANWFVDFMQSDCLG 941
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFM-- 903
I H+V +D+ G +C+ LA L +TAVD KTG V K P+ PDF+
Sbjct: 942 LIATRHLVVSDQDPNGTLGNDCLTLAGLHSTAVDFSKTGIPVDTKEIPKAPRFRPDFLAP 1001
Query: 904 ----------EIE-----------------EYQTYKSNKILGRLYRQI--KGAYDENI 932
EIE +Q YKS KILG LYR + K + E+I
Sbjct: 1002 APPAHIFDRNEIEFIGKNETLEEDDEDMLPPHQYYKSEKILGILYRNVDEKHIWTEDI 1059
>gi|169623159|ref|XP_001804987.1| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
gi|160704927|gb|EAT77662.2| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
Length = 1674
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 137/463 (29%), Positives = 222/463 (47%), Gaps = 58/463 (12%)
Query: 391 RLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKT 450
R V+ P+ + +V DRF+ ++F D LQ + D + ++
Sbjct: 58 RYVLAPSNR---VTMDEVLDRFVLLSFPDFRLQ---------WPPVAANDALRPATGREN 105
Query: 451 GVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA- 509
G + + +L G + Y F S++QL+ S + ++ E I+ MG+ +
Sbjct: 106 GDW--ITKMLVSGITINAISYHFFGHSNSQLKSRSCFMYAASKEEVARKIEG-MGDLSKL 162
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ- 568
+++AK + R+GL FSS + +P +E ++ D+ Y+F+DG G ++P A +AQ
Sbjct: 163 RSVAKKSKRIGLLFSSAEVSTMLP-SERCQDIDDVTSKDYIFTDGCGLMSPQFAKLLAQR 221
Query: 569 --ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK-SCHTSLEICSW 625
I+ D PS YQIRY GYKGV+ P ++ R SM+KFK S S + +
Sbjct: 222 RNIVFRDKRYLPSVYQIRYRGYKGVLTLDPTLSGQTQVQFRASMRKFKDSPDYSFAVVDY 281
Query: 626 TR-FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL-NLMLVASDVAFEVLTASCAEQ 683
++ + G LN +I+ LL TL +S++ Q + N+ AF+ L S +
Sbjct: 282 SKPYAFGSLNDEIVVLLHTLGISEKTLLAKQTQHLDFIQNVQGGDPRSAFQFL--SYINR 339
Query: 684 GNTAAIMLSAGFKPQT-EPHLQGMLTYELGEL----KECQCFIQVSESSL---------- 728
A +L G P++ P L ++ E + E +C I V +S L
Sbjct: 340 TELAEKLLLEG--PESVRPTLLSLVKQEYARMINKRDEQRCRILVPKSRLLFGVCDPTAK 397
Query: 729 ---------ENCF---SKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
CF ++ G A+T +IN V++ +NPCL PGD++ + VD PE
Sbjct: 398 DGCPGRLKEGECFVRITQDGDGRAQT----IINTEVLVTRNPCLHPGDLQKFKVVDIPEF 453
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
HL DC+VF +G RP + SG DLDGD ++VTWD +L+P +
Sbjct: 454 SHLVDCIVFTTQGKRPSADLMSGGDLDGDKFFVTWDSDLVPST 496
>gi|391864263|gb|EIT73559.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1188
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 192/690 (27%), Positives = 299/690 (43%), Gaps = 158/690 (22%)
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR-----------F 412
+++Q+ L+E N ++ +V R+ +TPT+ + +R F
Sbjct: 375 REIQDGFAYREGLHE---NTVNMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYF 431
Query: 413 LRVTFMDEGLQTM--NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
+RV F DE + + NANV Y KDI F R K I++ G + GR
Sbjct: 432 IRVQFCDENGEDLLFNANV-DY------KDI-----------FGRFKDIMTRGIQIAGRT 473
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGE-----TSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
Y+FL FS + LR + WF S + + I + +G+F+ + A+ AAR+G F+
Sbjct: 474 YNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHITSPARCAARIGQAFT 533
Query: 525 STHATVEIPPTEV------DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
T V + V D PD R VFSDG+G I+ ++ + + L P
Sbjct: 534 ETPFMVPLEKHGVLVSTIPDLTSPDGSR---VFSDGVGAISREVVASIWADIPLKRG-NP 589
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIR---MSLRGSMKKFKSCHT-SLEICSW-TRFQPGFL 633
+ +QIR G KG++A D +R + +R SM KF S +LEIC+ +R P L
Sbjct: 590 TCFQIRLGGAKGMLAA----DSRLRTAVIQIRPSMIKFDSEDMKNLEICNMASRPYPMVL 645
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL----TASC--------- 680
NRQ+I +L + S + F+ +Q ++L + V++D L A C
Sbjct: 646 NRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAECIGLYRLYRQ 705
Query: 681 --------AEQGNTAAIMLSAGFK-------PQTEPHLQGMLTY----ELGELKECQCFI 721
+ G AI+ + + P +GM Y E G L+E + ++
Sbjct: 706 CYWTRLNYKKDGFLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDETGFLQEGEVYV 765
Query: 722 QVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL-- 779
F + R+A G +++ ++P L GD++ + V PE H L
Sbjct: 766 ---------TFDRMEGRYAAPPG----PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRY 812
Query: 780 -CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
+C+VF QKG R ++ SG DLDGDLY+V WD L S ++ P + + +
Sbjct: 813 HRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPEL--ESVETFAPADYPRPTSIDIGR 870
Query: 839 HVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
V + LG I H+V AD++ G D +C LLA L + AVD KTG
Sbjct: 871 DVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLHSKAVDFSKTG 930
Query: 886 KIVTMPSHLKPKKY-PDFM--------------------------------EIEE-YQTY 911
V M + +Y PDF+ ++EE Y+ Y
Sbjct: 931 IPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDDADVEEPYRYY 990
Query: 912 KSNKILGRLYRQI--KGAYDENISVSSEVD 939
KS KILG+LYR I + + +++ SE D
Sbjct: 991 KSEKILGKLYRAIDEQSIWRKHVFSESETD 1020
>gi|322712330|gb|EFZ03903.1| rna-dependent rna polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1114
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 214/746 (28%), Positives = 315/746 (42%), Gaps = 149/746 (19%)
Query: 387 AEVRRLVITPTKAYWF---LESKDV--------ADRFLRVTFMDEGLQTMNANVLSYYVA 435
A V + ++TPT+ LE+K+ +D FLRVTF DE + LSY
Sbjct: 304 ALVLKALVTPTRIVLRGPDLETKNRVLRMFPGKSDHFLRVTFGDE-----DGEDLSY--- 355
Query: 436 PIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK-VGE 494
D T N +F+ + IL G + GRR+ FLAFS + LR HSAWF S VG+
Sbjct: 356 ---GDRTCND-----DIFEHYRRILLRGLTVAGRRFEFLAFSHSSLRSHSAWFCSPFVGQ 407
Query: 495 T-SVLD---IKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG- 548
+ +V D I +G F I AK AAR+G FS T + + + + D +N
Sbjct: 408 SLTVQDCRSIVKSLGVFQNIRIPAKCAARIGQAFSETPIALSLSQRGIRLQYIDDVKNSA 467
Query: 549 --YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSL 606
VFSDG+G I+ D EV L + P+ QIR AG KG+++ ++ G + +
Sbjct: 468 GTRVFSDGVGTISIDALQEVWDCLP-ERLGRPTCIQIRIAGVKGMLSL-DSQLRGKYICI 525
Query: 607 RG-SMKKFKSCHTS-LEICSWTRFQPGF-LNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
R SM KFKS L IC F LNRQI+ +L + + F Q N
Sbjct: 526 RSESMMKFKSQDLDVLGICDVGSRPLRFTLNRQIVKILEDMGIHHNWFLAWQDKAIR--N 583
Query: 664 LMLVASDVAFEVLTASCAEQGNTAAI------MLSAGFKPQTEPHLQGMLTYE-LGELK- 715
+ VAS E G + + + G + + L+ ++ L EL+
Sbjct: 584 FLSVASSTRHTRAFLRQYEVGTSLRLPELIEKLEENGIDYREDDFLRSVVGQAVLAELRF 643
Query: 716 -ECQCFIQVSESSL------ENCFSKHGSRF----------AETKKLQVINGFVVIAKNP 758
+ + I VS++ E F + G + A + G ++ ++P
Sbjct: 644 LKYKARIPVSKAVTLFGVMDETGFLQEGQIYVTYDVADHLGATGIEAAPAKGRALVTRSP 703
Query: 759 CLRPGDVRILEAVDRPELHHLCD---CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL 815
L PGD++ +E V P H L + C+VF +G R + SG DLDGDLY V WD +
Sbjct: 704 ALHPGDIQYVEMVTPPFGHALLELRNCIVFSSQGSRDLPSMLSGGDLDGDLYSVIWDPDA 763
Query: 816 IPPSKKSCPPMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYG 862
IP ++ P E KP V ++ LG I H ++AD G
Sbjct: 764 IP--TRNLKPAEYPRISPKPNKRQVRQEDMANFFIDFMKNDVLGIIATRHQMYADLKPAG 821
Query: 863 AFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPK---KYPDFME--------------- 904
D CI LA++ + AVD K+G V + +H PK DF+
Sbjct: 822 TLDPECIRLAEMHSAAVDYSKSG--VPVEAHCIPKVPQARADFLVPAPTLALHLSNDASY 879
Query: 905 -------IEE---------YQTYKSNKILGRLYRQI------------------KGAYDE 930
I E + TY+SNKILGRL+R+I G +
Sbjct: 880 FERLTACISESETSPAQPGFATYQSNKILGRLFREIDEHRIWKESTQAEVTTRTSGGIWD 939
Query: 931 NISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVN-RKEFR 989
+ E D++ V+I D + ++ A A+N + YD L L Q++VN R +
Sbjct: 940 GLLKHVESDLSAVNIILDWETKL-------ATAKNLRTEYDMALAETLRQFSVNPRGQVS 992
Query: 990 HIWSMPKYNSRKQGELQERLKHSYSA 1015
+ + + G Q R YSA
Sbjct: 993 EVEAFSGRSLNSAGR-QSRRHRVYSA 1017
>gi|350629963|gb|EHA18336.1| hypothetical protein ASPNIDRAFT_176277 [Aspergillus niger ATCC
1015]
Length = 1152
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 176/633 (27%), Positives = 282/633 (44%), Gaps = 111/633 (17%)
Query: 379 GPKNIDDIAEVRRLVITPTKAYWF---LESKDVA--------DRFLRVTFMDEGLQTMNA 427
GP D++ + +++ITPT+ LE ++ D F+RV F DE Q ++
Sbjct: 390 GPS--DNLTPIHKVMITPTRVTLHGPELEPRNRILRRFPNHHDYFIRVQFCDENGQDLHF 447
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDH--S 485
N +Y VF R K +L+ G + GR YSFL +S + LR H S
Sbjct: 448 NSRIHY----------------DDVFSRFKHVLTHGIQIAGRTYSFLGWSHSSLRSHAFS 491
Query: 486 AWFFSKVGE-TSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVD-HELP 542
+ F + G+ + I +G+F+ ++ A+ AAR+G F+ T + + +++ E+
Sbjct: 492 SPFVDESGQFQTHFSIIKALGDFSKIQSPARCAARIGQAFTDTPYAISLSEYDIEVSEMA 551
Query: 543 DI--KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD 600
D+ K VFSDGIG ++ ++A + + + P+ +Q+R G KG++A +
Sbjct: 552 DVTSKDGKRVFSDGIGTLSWNVAKSIWHHIP-EKKGFPTCFQVRLGGAKGMLAV-DGRLS 609
Query: 601 GIRMSLRGSMKKFKSCHTSLEICSW-TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMA 659
G ++ +R SM KF+ LEIC+ + LNRQ+I +L + D+ F T+Q +
Sbjct: 610 GSQVKVRPSMIKFEGDMKDLEICAMAAKPMVLVLNRQMIKILEDMGTPDDWFLTLQEAAL 669
Query: 660 SKLNLMLVASDVAFEVLTASCAEQGNTAAIM----------LSAGFKPQTEPHLQGMLTY 709
+KL + AS EV A G+T + L +P ++ ++
Sbjct: 670 TKLR-SVTASAHNSEVFIKRQA-VGDTIGLYRLFRHCHQRDLDYRKEPFIRSVVEAVVLK 727
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVI-------------NGFVVIAK 756
EL LK +L + G E ++ V G V++ +
Sbjct: 728 ELRLLKHKARIPVFKGITLFGVMDETG--LLEADQVYVTYETIEGRHAPPPNAGMVLVTR 785
Query: 757 NPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
+P L GD++ + V P+ H L +C+VF KG R ++ SG DLDGD++ V WD
Sbjct: 786 SPALHDGDIQFAQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNVIWDT 845
Query: 814 NLIP-----PSK--KSCPPMECTPAE----AKPLTCHVNHQNLGQICNAHVVHADRSEYG 862
+ P P+ + P P E A+ + +LG I H++ AD+ G
Sbjct: 846 DAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMADQEAEG 905
Query: 863 AFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM--------------EIEE 907
C LA+L +TAVD KTG V M K K + PDFM E+EE
Sbjct: 906 TSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDFMAPGPVARIHNKSDIELEE 965
Query: 908 Y----------------QTYKSNKILGRLYRQI 924
Y + Y+S KILG+LYR +
Sbjct: 966 YVIQAAYDEDDDMEPFHKYYRSEKILGKLYRGV 998
>gi|452978294|gb|EME78058.1| hypothetical protein MYCFIDRAFT_145022 [Pseudocercospora fijiensis
CIRAD86]
Length = 1703
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 147/491 (29%), Positives = 220/491 (44%), Gaps = 56/491 (11%)
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKY 515
V +L G L G Y F S++QL+ S + F+ E ++ +++ K
Sbjct: 109 VARLLKTGVVLNGLAYHFFGHSNSQLKSRSCFLFAASKEVIKEKVEALADFSNMQSVGKK 168
Query: 516 AARMGLCFSSTHATVEIPP---TEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---I 569
A R+GL FSS +E+ P T++D D+K YVF+DG G I LA +VAQ I
Sbjct: 169 AKRLGLLFSSAEHALELQPERCTDID----DVKLGDYVFTDGCGLIAVRLAKQVAQRKRI 224
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH-TSLEICSWTR- 627
+ + PS QIRY GYKGV+ P ++ R SMKK K S + ++
Sbjct: 225 VYRNKRYLPSVLQIRYRGYKGVLMIDPTLTGQTQVLFRKSMKKLKDVKDLSFSVVEHSKP 284
Query: 628 FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS-DVAFEVLTASCAEQGNT 686
+ GFLN +I+ LL+ L VS + + Q L+ AF L S + +
Sbjct: 285 YTFGFLNDEIVVLLNALGVSTDTILSKQTEYLQFLDEAYNGEPRAAFRFL--SYQNELDL 342
Query: 687 AAIMLSAGFKPQTEPHLQGMLTYE----LGELKECQCFIQVSESSLENCFSKHGSRFAET 742
A +L G L+ ++ E L + +E +C I +++S L R
Sbjct: 343 AEKLLIEGVH-SVRKSLRSLVKTEYSRMLNKYEEQRCRIMLTQSRLLFGVCDPTGRDGGM 401
Query: 743 KKL------------------QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
+L +IN V++ +NPCL PGD++ AVD PE HL DC+V
Sbjct: 402 SRLPPGTCFVRITLDGDGEPRTLINTEVLVTRNPCLHPGDLQKFRAVDVPEFSHLVDCIV 461
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS----------KKSCPPMECTPAEAK 834
FP +G RP + SG DLDGD ++VTWD ++IP K+ E T +
Sbjct: 462 FPIRGSRPSADLMSGGDLDGDKFFVTWDPDIIPKKIAEAAMYPGVKERHHFGEITGDDRA 521
Query: 835 PLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
+LG+I N ++ A GA C L +L + VD G V +P+
Sbjct: 522 EYFARYRSTSLGKIKNLYLKWARLK--GAMSPECQQLNRLFSQCVD----GNHVKVPAAF 575
Query: 895 K--PKKYPDFM 903
+ P+ PD +
Sbjct: 576 EDPPETPPDAL 586
>gi|409083384|gb|EKM83741.1| hypothetical protein AGABI1DRAFT_66661 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1198
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 170/595 (28%), Positives = 277/595 (46%), Gaps = 107/595 (17%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRVTF D+ +Y +D+ SF + RV L G ++ GR +
Sbjct: 428 FLRVTFRDD----------NYLQLRFDRDVDGPSF-----IRDRVGRFLKQGLSIAGRTF 472
Query: 472 SFLAFSSNQLRDHSAWFFSKV-----GETSVLDIKNWMGEFTAKNI--------AKYAAR 518
+FLA+S + L++HS WF K G+ I + +G F + A+YAAR
Sbjct: 473 TFLAYSQSALKEHSVWFVKKFHNAPYGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAAR 532
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKL---- 572
+ F++T A V + EV + L DIK + YVF+DG+G ++ DLA + L+
Sbjct: 533 ISQAFTATDAAV-VSVEEVLN-LDDIKTSDGKYVFTDGVGTMSQDLARAIWGKLRSAKRK 590
Query: 573 --DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK----SCHTSLEIC-SW 625
S P AYQ+R+ G KG+++ + ++LR SM KF+ S +EI ++
Sbjct: 591 SGRSSDYPHAYQVRFLGSKGMLSIDHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAF 650
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFW-----TVQASMASKLNLMLVASDVAFEVLTASC 680
R +LNR +ITLL L + +F VQ + ++ L L A + L AS
Sbjct: 651 DRPTAYYLNRPLITLLEGLGIPTNVFLKFQNDAVQETRSATLTLSKAARLLETHGLGASF 710
Query: 681 ---AEQGNTAAIML-SAGFKPQTEPHLQGMLTYELGELK--------ECQCFIQVSESSL 728
A + A + L S P LQ + + L +LK + + V++
Sbjct: 711 RLPATMTSLAKLGLGSIHDDPFYGKLLQIAVHHVLRDLKHHARIPVPDAWTLVGVADV-- 768
Query: 729 ENCFSKHGSRFA----ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRP------ELHH 778
+ + + G FA +T+ + + G ++I+++P + PGDV+I++A+ P
Sbjct: 769 -HSYLEEGEVFACVKHQTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREP 827
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP--------PSKKSCPPMECTP 830
L + +VF KG RP + G DLDGD+Y N++P P + + P E P
Sbjct: 828 LHNTVVFSVKGRRPLPSCLGGGDLDGDIY------NVLPLKEHPDFMPRRATYKPAEYAP 881
Query: 831 AEAK----PLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
+ K P T ++ +G I ++ AD+S G DE+C+ LA+L +
Sbjct: 882 TQRKLLDQPSTMDDVADFVMEYIISDVVGIIAINWLIIADQSPAGIEDEDCLRLAQLHSD 941
Query: 878 AVDSPKTGKIV---TMPSHLKPKK----YPDFMEIEEYQTYKSNKILGRLYRQIK 925
AVD PK+G+ V ++P P K P+ + + Y+S K +G L+R++K
Sbjct: 942 AVDYPKSGRAVNPESIPKLKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVK 996
>gi|242221257|ref|XP_002476381.1| predicted protein [Postia placenta Mad-698-R]
gi|220724386|gb|EED78433.1| predicted protein [Postia placenta Mad-698-R]
Length = 1141
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 175/626 (27%), Positives = 283/626 (45%), Gaps = 101/626 (16%)
Query: 380 PKNIDDIAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNAN 428
P DD + R+++TPT + + ++R FLRVTF+DE
Sbjct: 363 PPTTDDNFDCLRVIVTPTCLHLEGPDPERSNRVFRRYPGQEQNFLRVTFVDE-------T 415
Query: 429 VLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
L Y +++ F + +RV+ +L G + GR + FLA+S + L++H+ WF
Sbjct: 416 RLMYRFD---REVDGRGF-----INRRVRHMLVQGLTIAGRHFEFLAYSQSALKEHAVWF 467
Query: 489 FSKV---------GETSVLDIKNWMGEFTAKNI---AKYAARMGLCFSSTHATVEIPPTE 536
+ T + + ++ F + I A+YAAR+ F++T +++ + E
Sbjct: 468 VTPFRDPDGREVRASTIIASLGSFRPAFEPQLIYCPARYAARISQAFTATDSSISVELEE 527
Query: 537 VDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSA------YQIRYAGY 588
V ++ PDIK N Y F+DG+G+I+P LA ++ L+ A +QIR+ G
Sbjct: 528 VFYD-PDIKDNTGQYCFTDGVGRISPALARAISSELRAKKRRARRARTYTRLFQIRFMGS 586
Query: 589 KGVVAC-WPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF-QPG--FLNRQIITLLSTL 644
KG+++ + D I LR SM KF + SL + F +PG +LNR +I LL L
Sbjct: 587 KGMLSVDYQLSDRSI--FLRPSMIKFDAP-DSLNVEIAQAFDKPGKYYLNRPLIMLLEGL 643
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA----SCAEQGNTAAIMLSAGFKPQTE 700
V E+F +Q + + + + +L A + +T M G +P +E
Sbjct: 644 GVPYEVFEALQDDAVQDAEGAVHSLESSARLLEAYGLGASFRLSSTMVNMHRLGLRPLSE 703
Query: 701 PHL-QGMLTYE----LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV-------- 747
Q M+ + L ELK +L HG + E ++
Sbjct: 704 DIFWQQMMDFAVNHVLRELKHHARIPLPDGWTLVGVADVHG--YLEEGEIFACVDSPDLL 761
Query: 748 ----INGFVVIAKNPCLRPGDVRILEAVDRP------ELHHLCDCLVFPQKGDRPHTNEA 797
+ G VI+++P + PGDV+++ A+ RP E L + +VF KG+RP +
Sbjct: 762 EPIYLEGPTVISRSPTIHPGDVQLVHAIGRPPPGSPFEHESLRNGVVFSIKGERPLPSCL 821
Query: 798 SGSDLDGDLYYVTWDENLIP----------PSKKSCPPMECTPAEAKPLTC-HVNHQNLG 846
G DLDGD+Y VT +L P P+ K T + ++N LG
Sbjct: 822 GGGDLDGDVYNVTTMPSLRPARTYRSGSYKPAVKKTVDHPSTMEDVADFVAEYINSDTLG 881
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS--HLKPKKYPDFME 904
I ++ AD+S G D +C+ LA+L + AVD PK+G V + LK K PD+
Sbjct: 882 IIAINWLIIADQSSEGILDPHCLRLAQLHSDAVDYPKSGNPVPLERIPRLKFKAKPDWNA 941
Query: 905 IEEYQT-----YKSNKILGRLYRQIK 925
E Y+S + +GRLYR+I+
Sbjct: 942 PETLTRATPDFYESTRAIGRLYRRIE 967
>gi|426201566|gb|EKV51489.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1198
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 170/597 (28%), Positives = 277/597 (46%), Gaps = 107/597 (17%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
+ FLRVTF D+ +Y +D+ SF + RV L G ++ GR
Sbjct: 426 ESFLRVTFRDD----------NYLQLRFDRDVDGPSF-----IRDRVGRFLKQGLSIAGR 470
Query: 470 RYSFLAFSSNQLRDHSAWFFSKV-----GETSVLDIKNWMGEFTAKNI--------AKYA 516
++FLA+S + L++HS WF K G+ I + +G F + A+YA
Sbjct: 471 TFTFLAYSQSALKEHSVWFVKKFHNAPYGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYA 530
Query: 517 ARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKL-- 572
AR+ F++T A V + EV + L DIK + YVF+DG+G ++ DLA + L+
Sbjct: 531 ARISQAFTATDAAV-VSVEEVLN-LDDIKTSDGKYVFTDGVGTMSQDLARAIWGKLRSAK 588
Query: 573 ----DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK----SCHTSLEIC- 623
S P AYQ+R+ G KG+++ + ++LR SM KF+ S +EI
Sbjct: 589 RKSGRSSDYPHAYQVRFLGSKGMLSIDHTLNGAHTIALRPSMTKFEAESGSGEQEIEIAR 648
Query: 624 SWTRFQPGFLNRQIITLLSTLNVSDEIFW-----TVQASMASKLNLMLVASDVAFEVLTA 678
++ R +LNR +ITLL L + +F VQ + ++ L L A + L A
Sbjct: 649 AFDRPTAYYLNRPLITLLEGLGIPTNVFLKFQNDAVQETRSATLTLSKAARLLETHGLGA 708
Query: 679 SC---AEQGNTAAIML-SAGFKPQTEPHLQGMLTYELGELK--------ECQCFIQVSES 726
S A + A + L S P LQ + + L +LK + + V++
Sbjct: 709 SFRLPATMTSLAKLGLGSIHDDPFYGKLLQIAVHHVLRDLKHHARIPIPDAWTLVGVADV 768
Query: 727 SLENCFSKHGSRFA----ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRP------EL 776
+ + + G FA +T+ + + G ++I+++P + PGDV+I++A+ P
Sbjct: 769 ---HSYLEEGEVFACVKHQTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAR 825
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP--------PSKKSCPPMEC 828
L + +VF KG RP + G DLDGD+Y N++P P + + P E
Sbjct: 826 EPLHNTVVFSVKGRRPLPSCLGGGDLDGDIY------NVLPLKEHPDFMPKRATYEPAEY 879
Query: 829 TPAEAK----PLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLA 875
P + K P T ++ +G I ++ AD+S G DE+C+ LA+L
Sbjct: 880 APTQRKLLDQPSTMDDVADFVMEYIISDVVGIIAINWLIIADQSPAGIEDEDCLRLAQLH 939
Query: 876 ATAVDSPKTGKIVT---MPSHLKPKK----YPDFMEIEEYQTYKSNKILGRLYRQIK 925
+ AVD PK+G+ V +P P K P+ + + Y+S K +G L+R++K
Sbjct: 940 SDAVDYPKSGRAVNPELIPKLKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVK 996
>gi|389746475|gb|EIM87655.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1279
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 168/583 (28%), Positives = 257/583 (44%), Gaps = 91/583 (15%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLR++F DE P+ +D TS + S + R +S++ DG + GR
Sbjct: 510 DCFLRLSFQDENH------------TPLRRDPTSGT-SIAELLRTRFRSVMVDGIRIAGR 556
Query: 470 RYSFLAFSSNQLRDHSAWFFSKV----GETSVLD-IKNWMGEFT--AKNIAKYAARMGLC 522
+ FL +S + L+DHS F S GE + I+ +G F + A AAR
Sbjct: 557 YFQFLGYSMSGLKDHSIMFMSSFHDERGELMTAEGIRRTLGSFNHISNKPALLAARWSQA 616
Query: 523 FSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILK------LDGSP 576
FS++ +V + P E+ +G +F+DG G I+P LA +V + L+
Sbjct: 617 FSASDPSVTLDPNEIRRIDDRRSPSGSLFTDGCGTISPLLARDVWKFLQHRRRRAAKMRS 676
Query: 577 PPSAYQIRYAGYKGVVACWPAKDD-GIRMSLRGSMKKFKSCHT-SLEICSWTRFQP--GF 632
PS +QIR G KGV+ P G + LR S KF++ +L+I S T +P F
Sbjct: 677 VPSCFQIRIGGAKGVLFQDPTLAGLGRVVCLRPSQTKFENPEALTLDIAS-TSARPIRMF 735
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
LNR +I LL L V D++F ++Q + + A D +F + G ++ L+
Sbjct: 736 LNRPLILLLEFLGVQDDVFLSLQKDATAAVER---ARD-SFTDAAKLFSHHGFGSSFRLA 791
Query: 693 AGFKPQTEPHLQGMLTYELGELKE--CQCFIQVSESSLENCFSK---------HGS---- 737
+ F +L L + +L+E CQ + E + + + HGS
Sbjct: 792 SLFN-----NLISELKLDDSDLQELGCQLITRTVEYAATHVLREIKFRARIPVHGSWTLL 846
Query: 738 ------------------RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
R T I G V+I ++P + PGDV+ + AV P+L HL
Sbjct: 847 GVSDEWSCLREGEIYATVRDERTGTYVPIEGRVLITRSPQIHPGDVQFVNAVRHPKLEHL 906
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC- 838
+ +VF +GDR + G DLDGD+Y + + NL P E P + P C
Sbjct: 907 NNVVVFSCEGDRSLPSMLGGGDLDGDIYNLILNPNLFPTRTSVAGAYEPLPHKVTPHPCT 966
Query: 839 ----------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV 888
++ +G I H+ AD G + C+LLA+ A+ AVD KTG V
Sbjct: 967 IEDIADFVIDYIEADLVGYISILHLRIADLDPKGPSCDECLLLAEKASHAVDFQKTGTPV 1026
Query: 889 TMPSHLKPKKY-PDFMEIE------EYQTYKSNKILGRLYRQI 924
+ + + PDF+ E E Y S+K+LG LYR +
Sbjct: 1027 NFDNLPRAGRLRPDFLAGEVVEPSAESSFYPSDKVLGVLYRNV 1069
>gi|403413304|emb|CCM00004.1| predicted protein [Fibroporia radiculosa]
Length = 1503
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 172/603 (28%), Positives = 278/603 (46%), Gaps = 109/603 (18%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D FLRV F DE + L Y A +++ +S +F RV +L GF L
Sbjct: 438 DHQDHFLRVDFRDE-------DRLQYRWA---REVDGSSL-----LFDRVGGVLRSGFEL 482
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKV-----GETSVLDIKNWMGEFTA--KNIAKYAARM 519
GR + FLA+S + LR+H+ WF + G + I++ +G+F+ + +KYAAR+
Sbjct: 483 AGRYFEFLAYSQSALREHAVWFINPFYHPEEGHITAQTIRDSLGDFSGVIRQPSKYAARL 542
Query: 520 GLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP-- 577
F++T +V I + + E+PD+ Y F+DG+G I+ +L + L S P
Sbjct: 543 AQAFTATDPSVRITRGQWE-EMPDLGEKPYEFTDGVGTISTELGNLIWDALC--ASRPEN 599
Query: 578 ------PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF--Q 629
PSAYQIR+ GYKG+V + GI+M LR SM KF++ L R +
Sbjct: 600 RRRGLKPSAYQIRFLGYKGMVVI-DEQLQGIKMHLRPSMNKFRAHDDDLAEIEIARAFER 658
Query: 630 PG--FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA 687
PG +LNR +I +L V + F +Q +K ++ + + V G +
Sbjct: 659 PGTSYLNRPLIMILEDRGVDKKAFINLQER--AKTDIYTASDSITKSVSMLKAHTLGKSY 716
Query: 688 AI--------MLSAGFKPQ------TEPHLQGMLTYE----LGELK--------ECQCFI 721
+ + GFK + +P ++ ++ Y L ++K + +
Sbjct: 717 GLDFILQSLQNIGMGFKHEKSIHVLQDPFIERLIHYSKNHVLRDIKHGARIPIPDSYLLV 776
Query: 722 QVSE-------SSLENCFS-KHGSRF-----AETKKLQVINGFVVIAKNPCLRPGDVRIL 768
V++ + +EN F K G F A+ + + G VVI+++P + PGDV+ +
Sbjct: 777 GVADEGPAYVHAGMENVFCLKKGEIFACVQNADDPEPTYLKGSVVISRSPVVHPGDVQRV 836
Query: 769 EAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
A+ P +C + +V P G R + G DLDGDLY + L+P +
Sbjct: 837 WAIGSPPPDKVCFFRNLKNVVVLPSAGGRSLASCLGGGDLDGDLYSIIKHGPLLPTEHED 896
Query: 823 CPPMECTPAEAKPL--------TC-----HVNHQNLGQICNAHVVHADRSEYGAFDENCI 869
P A + L C ++N LG + + H++ AD+S++G D C+
Sbjct: 897 --PASYLSAGTRTLDRDSTIADICDFVVEYLNSDVLGLLSDRHLIIADQSKHGTNDTKCL 954
Query: 870 LLAKLAATAVDSPKTGKIVTM---PSHLKPKKYPDFMEIEEYQT-----YKSNKILGRLY 921
LA+L + AVD PK G V + P L P K PD+ + E+ Y+S++ LG L+
Sbjct: 955 SLAELCSQAVDYPKNGIPVDIHDSPHWLIPYK-PDWHQAEDAAPRHTDYYESHRALGDLF 1013
Query: 922 RQI 924
R I
Sbjct: 1014 RNI 1016
>gi|392597024|gb|EIW86346.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1218
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 176/591 (29%), Positives = 266/591 (45%), Gaps = 112/591 (18%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRV+F DE AP+ +D +S + R + G + GR++
Sbjct: 460 FLRVSFQDEN------------CAPLRRDF---EWSISELMKSRFRPKFLKGHRVAGRKF 504
Query: 472 SFLAFSSNQLRDHSAWFFSKV----GE-TSVLDIKNWMGEFTA--KNIAKYAARMGLCFS 524
FL +S + LR+HS WF + GE + I+N +G+F+ K A+ AR FS
Sbjct: 505 EFLGYSMSGLREHSVWFVAPFQNDRGEWLNAAAIRNLLGDFSELLKRPARLGARWSQAFS 564
Query: 525 STHATVEIPPTEVDHELPDI--KRNGYVFSDGIGKITPDLAMEVAQILKLDGSP------ 576
+T +V + E+ + DI R+ V +DG I+PDLA + + L+ D
Sbjct: 565 TTDPSVVLRQEEI-FRVDDIISPRSKKVMTDGCSSISPDLARNIWEKLRTDRRQLSSLKN 623
Query: 577 PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQ 636
PPSA+Q R G KGVV P + G + LR S KF+ + ++ S +R +P +LNR
Sbjct: 624 PPSAFQFRLGGAKGVVVQNPDLE-GKVVCLRPSQLKFEGSELTFDVQSHSRSRPMYLNRP 682
Query: 637 IITLLSTLNVS-----------DEIFWT--VQASMASKLNLMLV---------------- 667
+I LL + S D+I V++S ++ V
Sbjct: 683 LIALLEHVAASGLVTRVLKLQHDDIMEAQGVRSSFKDASKMLEVHGLGAPFRLGSLFHNL 742
Query: 668 ASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESS 727
+S++ V T+ +G I++ A ++ + T+ L ELK + I+V S
Sbjct: 743 SSELNLHVWTSETP-RGLRNEIIIDA---------MRCISTHALRELK-YRAHIRVPGSY 791
Query: 728 LENCFSKH------GSRFA-----ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
S G FA T I G V + ++P + PGD+++++AV RPEL
Sbjct: 792 TLMGVSDEWDCLNPGEIFATVRDYRTGVYHAIEGPVAVTRSPQIHPGDIQVVKAVRRPEL 851
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
HL + +VF +GDRP N G DLDGD + + DENL P + P + P
Sbjct: 852 EHLTNVIVFSTRGDRPLPNYLGGGDLDGDDFNLILDENLFPTYNRIPGSYVSLPIKETPH 911
Query: 837 TCHV-----------NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
C V +G I AH+ AD + + + C+ LA+LA+ AVD PKTG
Sbjct: 912 ICGVEDVVDFIFDYFESDLVGLISIAHLRFADLGDPDS--QECMTLAELASQAVDFPKTG 969
Query: 886 KIVT------MPSHLKPKKYPDFMEIE------EYQTYKSNKILGRLYRQI 924
V P +K PDF+ E + YKS K+LGRL+R+I
Sbjct: 970 TPVQFEDLPRFPDTIK----PDFLAKEGEDPHQNSRFYKSPKLLGRLFRRI 1016
>gi|317158412|ref|XP_001826725.2| rna-dependent rna polymerase [Aspergillus oryzae RIB40]
Length = 1206
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 190/690 (27%), Positives = 297/690 (43%), Gaps = 158/690 (22%)
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR-----------F 412
+++Q+ L+E N ++ +V R+ +TPT+ + +R F
Sbjct: 375 REIQDGFAYREGLHE---NTVNMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYF 431
Query: 413 LRVTFMDEGLQTM--NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
+RV F DE + + NANV KDI F R I++ G + GR
Sbjct: 432 IRVQFCDENGEDLLFNANV-------DYKDI-----------FGRFIDIMTRGIQIAGRT 473
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGE-----TSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
Y+FL FS + LR + WF S + + I + +G+F+ + A+ AAR+G F+
Sbjct: 474 YNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHITSPARCAARIGQAFT 533
Query: 525 STHATVEIPPTEV------DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
T V + V D PD R VFSDG+G I+ ++ + + L P
Sbjct: 534 ETPFMVPLEKHGVLVSTIPDLTSPDGSR---VFSDGVGAISREVVASIWADIPLKRG-NP 589
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIR---MSLRGSMKKFKSCHT-SLEICSW-TRFQPGFL 633
+ +QIR G KG++A D +R + +R SM KF S +LEIC+ +R P L
Sbjct: 590 TCFQIRLGGAKGMLAA----DSRLRTAVIQIRPSMIKFDSEDMKNLEICNMASRPYPMVL 645
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL----TASC--------- 680
NRQ+I +L + S + F+ +Q ++L + V++D L A C
Sbjct: 646 NRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAECIGLYRLYRQ 705
Query: 681 --------AEQGNTAAIMLSAGFK-------PQTEPHLQGMLTY----ELGELKECQCFI 721
+ G AI+ + + P +GM Y E G L+E + ++
Sbjct: 706 CYWTRLNYKKDGFLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDETGFLQEGEVYV 765
Query: 722 QVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL-- 779
F + R+A G +++ ++P L GD++ + V PE H L
Sbjct: 766 ---------TFDRMEGRYAAPPG----PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRY 812
Query: 780 -CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
+C+VF QKG R ++ SG DLDGDLY+V WD L S ++ P + + +
Sbjct: 813 HRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPEL--ESVETFAPADYPRPTSIDIGR 870
Query: 839 HVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
V + LG I H+V AD++ G D +C LLA L + AVD KTG
Sbjct: 871 DVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLHSKAVDFSKTG 930
Query: 886 KIVTMPSHLKPKKY-PDFM--------------------------------EIEE-YQTY 911
V M + +Y PDF+ ++EE Y+ Y
Sbjct: 931 IPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDDADVEEPYRYY 990
Query: 912 KSNKILGRLYRQI--KGAYDENISVSSEVD 939
KS KILG+LYR I + + +++ SE D
Sbjct: 991 KSEKILGKLYRAIDEQSIWRKHVLSESETD 1020
>gi|395332591|gb|EJF64970.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1236
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 164/604 (27%), Positives = 266/604 (44%), Gaps = 108/604 (17%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV F +E N +S+ PI ++ S Q+ R L G + GR
Sbjct: 453 DYFLRVEFREE-------NRMSFR-WPI--EVNGRSLIQQ-----RFGKFLKQGLEIAGR 497
Query: 470 RYSFLAFSSNQLRDHSAWFFSKV-----GETSVLDIKNWMGEFTAKNI----AKYAARMG 520
+ FL +S++ LR+H+ WF + G + I+N +G+FT K +KYAAR+
Sbjct: 498 TFRFLGYSTSGLREHTVWFMADFNHPEEGPVTPEKIRNDLGDFTFKKSIRQPSKYAARIA 557
Query: 521 LCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSP---- 576
FS T + +I + + +PD+ + Y F+DG G I+ +L + +L + SP
Sbjct: 558 QAFSGTDPSYKITIGQWEEGVPDLGTDPYEFTDGQGTISVELRDRIWDVL-CEASPDKRK 616
Query: 577 ---PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH---TSLEIC-SWTRFQ 629
PSA+QIR+ G KG+V + +GI++ LR SMKKF H +EI ++ +
Sbjct: 617 LILKPSAFQIRFLGCKGIVVV-DEQLEGIKLRLRDSMKKFHVEHMREAEIEIAKAFIKPG 675
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKL----------NLMLVASDVA------- 672
P L R +I +L + + +Q K+ +L D+
Sbjct: 676 PARLCRPLIAVLEDRGIHKQHLLALQEKAKKKVVEARDTIEQTAGLLRDHDLGNVYGLRY 735
Query: 673 -FEVLTASCAEQGNT---AAIMLSAGFKPQTEPHLQGMLTYEL---------------GE 713
E L + + G A ++ F + + Q + E+ G
Sbjct: 736 ILEHLRKAGVDTGKKKPRARHIMDNEFIARLIDYAQTHILSEIKHDARIPIEEAHQLVGC 795
Query: 714 LKECQCFIQVSESSLENCFSKHGSRFA-----ETKKLQVINGFVVIAKNPCLRPGDVRIL 768
E +I + K G FA ++ + I G V I+++P + PGDV+ +
Sbjct: 796 ADEGPAYIAAGHDPEKVICLKEGEIFACVQQPDSDEPIYIQGLVSISRSPHIHPGDVQRV 855
Query: 769 EAVDRPE--------LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
A+ +P +L + +V P GDR + +G D+DGD + V D L+P +
Sbjct: 856 RAIGKPPDDPDKVCFFRNLRNVVVMPSVGDRSLASMLAGGDVDGDEFLVIKDMTLLPTT- 914
Query: 821 KSCPPMECTPAEAKPL--------TC-----HVNHQNLGQICNAHVVHADRSEYGAFDEN 867
P + +PL C ++ +G + + H+V AD+S+YG FDE+
Sbjct: 915 -LVEPASYVGVKPEPLDRDSTVDDICDFFMEYMQSDVVGLVADLHLVIADQSKYGTFDED 973
Query: 868 CILLAKLAATAVDSPKTG---KIVTMPSHL---KPK-KYPDFMEIEEYQTYKSNKILGRL 920
C+ LA+L + AVD PK G + MP L KP K P+ + Y+S + LG L
Sbjct: 974 CMRLAQLCSQAVDYPKNGVPVNVENMPRKLIRAKPDWKKPEDTDYRPADYYESTRALGEL 1033
Query: 921 YRQI 924
+R I
Sbjct: 1034 FRNI 1037
>gi|295668891|ref|XP_002794994.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285687|gb|EEH41253.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1142
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 193/675 (28%), Positives = 284/675 (42%), Gaps = 158/675 (23%)
Query: 336 CQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVIT 395
Q EV V AL +++ +A E + V+E + P NI + R +T
Sbjct: 377 VQASEVDVVALMKLFA------NALEIV--VREKALSRSNRPIHPNNI----LIHRAQVT 424
Query: 396 PTKAYWF---LESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSN 444
P Y + LE+K+ D FLRV F+DE + + + Y +
Sbjct: 425 PCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDE-----SGDPVRY-----------D 468
Query: 445 SFSQKTGVFK-RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV--GET---SVL 498
S + +F+ R K +L +G + GR++ FL FS + LR + WF + G T + +
Sbjct: 469 SRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATV 528
Query: 499 DIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGK 557
I+N +G F + AK AAR+G FS T ++ I ++ D++RNG +FSDG+G
Sbjct: 529 IIQN-LGRFDHIHSPAKQAARIGQTFSDTLTSIPIS-FDMLSVGEDVERNGRIFSDGVGT 586
Query: 558 ITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH 617
I+P L + + P P G+ + L GS K
Sbjct: 587 ISPFLIKSMVKF------PVPETV------------------GGLNIELCGSGLKA---- 618
Query: 618 TSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL- 676
P FLN Q+I +L L V F +QA +L ++ A L
Sbjct: 619 -----------LPFFLNAQLIKILEDLGVEQSAFLKLQADEIERLRATAPSTAQAARFLE 667
Query: 677 -TASCAEQGNTAAIMLSAGFK-PQTEPH-----LQGMLTYELGELKECQCFIQVSESSL- 728
T G I + GF+ T+ ++ + +L +LK + I+V +
Sbjct: 668 DTHIAKSIGLPWLISILEGFRLSHTDDEFLRRVMELAVLIKLRDLK-YRARIRVPNAVTL 726
Query: 729 -----ENCFSKHGSRFAET-----KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE--- 775
E K G F T + ++ VV+ ++P + PGDV++ +AVD P
Sbjct: 727 FGIMDETGILKEGEIFCVTLSEDGHREVLVRPRVVVTRSPAMHPGDVQVAKAVDVPADSP 786
Query: 776 LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP 835
L L +C+ F Q GDR + SG DLDGDLY V +DE LIP K + PP E E K
Sbjct: 787 LRQLHNCIAFSQYGDRDLPSMLSGGDLDGDLYNVIYDETLIP--KITVPPAEYPRVEEKV 844
Query: 836 L-------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
L + LG+I H AD+ + G FDE C+LLA+L +TAVD
Sbjct: 845 LNRPVVTDDIIDFFVTFMQQDQLGRIATIHQAIADQRDRGTFDEQCLLLAELHSTAVDFS 904
Query: 883 KTGKIVTMPSHLK-PKKYPDF---------------MEIEEYQT---------------- 910
K+G V + K P+ PDF E +E T
Sbjct: 905 KSGVPVDLARIPKFPRYRPDFQAHGPRVRIAESLSLFEEDEETTAQDLHDDEDDERPPTR 964
Query: 911 -YKSNKILGRLYRQI 924
YKS KILG+LYR I
Sbjct: 965 FYKSYKILGKLYRSI 979
>gi|403414238|emb|CCM00938.1| predicted protein [Fibroporia radiculosa]
Length = 1215
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 173/615 (28%), Positives = 280/615 (45%), Gaps = 103/615 (16%)
Query: 392 LVITPTKAYW---FLESKDV--------ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKD 440
+V+TPT Y F E + D FLRV+F++E N L Y ++
Sbjct: 420 VVVTPTTMYLEGPFPERSNRIMRMYMANQDSFLRVSFVEE-------NRLMYRFD---RE 469
Query: 441 ITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET----- 495
+ + F V +RVK +L +G + GR + FLA+S + L++H+ WF T
Sbjct: 470 LDARDF-----VNRRVKHLLLNGLTIAGRHFDFLAYSQSALKEHAVWFVKPFNHTDRRQI 524
Query: 496 SVLDIKNWMGEFTAKNI--------AKYAARMGLCFSSTHATVEIPPTEVDHELPDI--K 545
I + +G F A+YAAR+ F++T ++V + EV +PDI
Sbjct: 525 DAATIISGLGSFHDLAFDERLIYCPARYAARISQAFTATDSSVSVEAEEV-VPIPDIWDA 583
Query: 546 RNGYVFSDGIGKITPDLAMEVAQILKLDGS-----PPPSAYQIRYAGYKGVVACWPAKDD 600
+ Y F+DG+G I+PDLA + L+ P AYQ+R+ G KG+++ ++
Sbjct: 584 THTYSFTDGVGTISPDLAQAIWDELRAKQKRSRHRTKPRAYQVRFMGSKGMLSVDYRLEN 643
Query: 601 GIRMSLRGSMKKFKSCHTSLEICSWTRFQPG--FLNRQIITLLSTLNVSDEIFWTVQ-AS 657
+ + LR SM KF + ++ + +PG +LNR +I LL L V F +Q A+
Sbjct: 644 RL-VCLRESMIKFDAPNSLFIEIARAFDKPGRYYLNRPLIMLLEGLGVPYSTFQALQDAA 702
Query: 658 MASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS---AGFKPQTEPHL-QGMLTYE--- 710
+ + + + S A + + MLS G P E Q M+ +
Sbjct: 703 VQNAQDSVESLSSSARLLEAHGLGTSFRLTSTMLSLHRLGLGPLHEDIFWQQMMDFAVNH 762
Query: 711 -LGELK--------ECQCFIQVSESSLENCFSKHGSRFA-----ETKKLQVINGFVVIAK 756
L ELK + + V++ + F G FA ++ + G +I++
Sbjct: 763 VLRELKHHARIPVPDGWTLVGVADV---HGFLNEGEIFACVHPQDSSVPIYLEGPTLISR 819
Query: 757 NPCLRPGDVRILEAVDRP------ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVT 810
+P + PGDV+++ A+ P E L + +VF KG RP + G DLDGD+Y +T
Sbjct: 820 SPTIHPGDVQVVHAIGPPPPGSPFEKEPLPNTVVFSIKGGRPLPSYLGGGDLDGDVYNLT 879
Query: 811 WDENLIPPSKKSCPPMECTPAEAK----PLTC---------HVNHQNLGQICNAHVVHAD 857
++ P +++ PP PA K P T ++ LG I ++ AD
Sbjct: 880 TMPSMRP--RRTYPPARYDPAPKKFVDHPSTMADVAEFVAEYIISDTLGIIAINWLITAD 937
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS--HLKPKKYPDF-----MEIEEYQT 910
+S G FD +C+ LA+L + AVD PK+G V + LK K PD+ + E
Sbjct: 938 QSGLGIFDPDCLKLAQLHSDAVDYPKSGIPVALDQIPRLKRKSKPDWNAPETITKESTNW 997
Query: 911 YKSNKILGRLYRQIK 925
Y+S + +G L+R I+
Sbjct: 998 YESTRAIGHLFRAIE 1012
>gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1188
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 191/690 (27%), Positives = 298/690 (43%), Gaps = 158/690 (22%)
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR-----------F 412
+++Q+ L+E N ++ +V R+ +TPT+ + +R F
Sbjct: 375 REIQDGFAYREGLHE---NTVNMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYF 431
Query: 413 LRVTFMDEGLQTM--NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
+RV F DE + + NANV Y KDI F R I++ G + GR
Sbjct: 432 IRVQFCDENGEDLLFNANV-DY------KDI-----------FGRFIDIMTRGIQIAGRT 473
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGE-----TSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
Y+FL FS + LR + WF S + + I + +G+F+ + A+ AAR+G F+
Sbjct: 474 YNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHITSPARCAARIGQAFT 533
Query: 525 STHATVEIPPTEV------DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
T V + V D PD R VFSDG+G I+ ++ + + L P
Sbjct: 534 ETPFMVPLEKHGVLVSTIPDLTSPDGSR---VFSDGVGAISREVVASIWADIPLKRG-NP 589
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIR---MSLRGSMKKFKSCHT-SLEICSW-TRFQPGFL 633
+ +QIR G KG++A D +R + +R SM KF S +LEIC+ +R P L
Sbjct: 590 TCFQIRLGGAKGMLAA----DSRLRTAVIQIRPSMIKFDSEDMKNLEICNMASRPYPMVL 645
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL----TASC--------- 680
NRQ+I +L + S + F+ +Q ++L + V++D L A C
Sbjct: 646 NRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAECIGLYRLYRQ 705
Query: 681 --------AEQGNTAAIMLSAGFK-------PQTEPHLQGMLTY----ELGELKECQCFI 721
+ G AI+ + + P +GM Y E G L+E + ++
Sbjct: 706 CYWTRLNYKKDGFLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDETGFLQEGEVYV 765
Query: 722 QVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL-- 779
F + R+A G +++ ++P L GD++ + V PE H L
Sbjct: 766 ---------TFDRMEGRYAAPPG----PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRY 812
Query: 780 -CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
+C+VF QKG R ++ SG DLDGDLY+V WD L S ++ P + + +
Sbjct: 813 HRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPEL--ESVETFAPADYPRPTSIDIGR 870
Query: 839 HVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
V + LG I H+V AD++ G D +C LLA L + AVD KTG
Sbjct: 871 DVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLHSKAVDFSKTG 930
Query: 886 KIVTMPSHLKPKKY-PDFM--------------------------------EIEE-YQTY 911
V M + +Y PDF+ ++EE Y+ Y
Sbjct: 931 IPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDDADVEEPYRYY 990
Query: 912 KSNKILGRLYRQI--KGAYDENISVSSEVD 939
KS KILG+LYR I + + +++ SE D
Sbjct: 991 KSEKILGKLYRAIDEQSIWRKHVLSESETD 1020
>gi|392571578|gb|EIW64750.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1224
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 175/654 (26%), Positives = 286/654 (43%), Gaps = 122/654 (18%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV F DE + + ++I F V +RVKS+L G G
Sbjct: 453 DSFLRVCFQDENRLQLRFD----------REIDGTDF-----VNRRVKSVLLGGLAFPGA 497
Query: 470 RYSFLAFSSNQLRDHSAWFFSKV------GETSVLDIKNWMGEF-TAKNI---------- 512
R+ FLA+S + L++H+ WF G T +D +G T +N+
Sbjct: 498 RFDFLAYSQSALKEHAVWFVKPFRHTDDQGYTHFVDAAAIIGSLGTFRNLTFDPELIYCP 557
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVDHELPDIK--RNGYVFSDGIGKITPDLAMEVAQIL 570
A+YAAR+ F++T A++ I ++ DIK F+DG+G I+P LA ++ + L
Sbjct: 558 ARYAARISQAFTATDASITIDAGQIIFG-SDIKDASGKREFTDGVGTISPQLAKDIWRAL 616
Query: 571 KLDGSPP------PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEIC 623
+ + P AYQIR+ G KG+++ G + +R SM KF+S + ++E+
Sbjct: 617 QENRRRGRRDRTYPRAYQIRFQGSKGMLSV-DYTLPGRSILIRPSMIKFESPDSRNIEVA 675
Query: 624 -SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA-SCA 681
++ + P +LNR +I LL L V E+F +Q + + + + + + +L
Sbjct: 676 RAFEKPAPYYLNRPLIMLLEGLGVPYEVFQRLQDNAVRDVKAAVESLERSARLLEGHGLG 735
Query: 682 EQGNTAAIMLS---AGFKPQT-----EPHLQGMLTYELGELKECQCFIQVSES-SLENCF 732
++ML G P + + + L ELK + I V E +L
Sbjct: 736 GSFRLTSVMLGLHKLGLGPLNNEVFWRQTMDFAINHVLRELKH-RARIPVPEGWTLVGVA 794
Query: 733 SKHGS----------RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE------L 776
HG + L+ + G +I+++P + PGD +++ A+ RP +
Sbjct: 795 DVHGYLEEGEIFVCIDAPDRGGLRYLEGRTLISRSPTIHPGDAQVVHAIGRPRPGSPFSM 854
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE---- 832
L + +VF KG RP + G DLDGD Y VT L+PP + TP +
Sbjct: 855 ESLRNTVVFSIKGKRPLPSCLGGGDLDGDEYNVTSMPELLPPRTFYAAEYKATPRKLVDH 914
Query: 833 -------AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
A+ + ++N LG I ++ AD+S G D +C+ LA L + AVD PK+G
Sbjct: 915 ESTMVDVAEFVAEYINSDTLGIIAITWLIIADQSTEGILDPDCLKLAALHSDAVDYPKSG 974
Query: 886 KIVTMPSHLKPKKY--------PDFMEI----EEYQTYKSNKILGRLYRQIKGAYDENIS 933
+ V + H+ ++ P+ M I E + Y+S + +G+LYR I
Sbjct: 975 QPVPI-QHIPRLQFARKPDWNAPETMSIDTLSESPRFYESVRAIGKLYRSI--------- 1024
Query: 934 VSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQ--LNGLLGQYNVNR 985
DL +VD A + + GQ L +LGQ++ NR
Sbjct: 1025 ----------------DLPALRTVDRAARYQLRHMRQAGQDFLPTILGQFHTNR 1062
>gi|342319755|gb|EGU11702.1| RNA-directed RNA polymerase 2 [Rhodotorula glutinis ATCC 204091]
Length = 1904
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 149/533 (27%), Positives = 245/533 (45%), Gaps = 67/533 (12%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--KVGETSVLD---IKNWMGE 506
+ R + DGF L GR + FLA+SS+ L+ S +F S ++ + +++ I +G+
Sbjct: 1160 IASRFSPLFRDGFELGGRSWRFLAWSSSGLKSSSCFFMSPFRLDDETLITPTFIHRTIGD 1219
Query: 507 FTAKNIA----KYAARMGLCFSSTHATVEIPPTEV----DHELPDIKRNGYVFSDGIGKI 558
FT A KY AR+ FSS+ ++ + P ++ D PD G FSDG+G I
Sbjct: 1220 FTGSETALIPAKYMARIAQAFSSSKPSLTLRPDQMLSIEDITAPD----GSCFSDGVGLI 1275
Query: 559 TPDLAMEVAQILKLDGSP---PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS 615
+P LA +V + L + PP+ +Q R G KG + P + G ++LR S KF+S
Sbjct: 1276 SPSLANDVVEKLGIKLGKEERPPTCFQFRLGGAKGTLQVDPTLE-GKVVALRPSQVKFRS 1334
Query: 616 CHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV 675
TSLEI PG+LNR +ITLL L + ++F +QA +K+ + A ++
Sbjct: 1335 TLTSLEIAGTFEAGPGYLNRPLITLLENLGIPADVFLKLQAKATAKIRKSRASLPSAVKL 1394
Query: 676 LTASCAEQGN--TAAIML---------SAGFKPQTEPHLQGMLTYELGELKECQ------ 718
G +A+ L +A P L + + L ++K
Sbjct: 1395 PRDWSLASGTRFVSALNLLAKDQATRDAAFANPFVARCLDASVVHALRDIKYLARIPLPG 1454
Query: 719 CFIQVSESSLENCFSKHG--SRFAET-KKLQVINGFVVIAKNPCLRPGDVRILEAVDR-- 773
C+ V ++ C ++ +R + + + G + I+++P PGD R++ AV +
Sbjct: 1455 CYNLVGVVDVDGCLAQDEIYARISRPDGSTEYLQGTIAISRSPTNHPGDCRLVRAVGKLP 1514
Query: 774 ----PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY-YVTWDENLIPPSKKSCPPMEC 828
+ L +C+VFP G R + +G DLDGD+Y +T L+P + P
Sbjct: 1515 KGAGERIRGLTNCVVFPVHGPRSLPSMLAGGDLDGDVYLLLTEASGLVPSPDRIAEPAAY 1574
Query: 829 TPAEAKPLTCHVNHQNLGQ-------------ICNAHVVHADRSEYGAFDENCILLAKLA 875
A L V+ ++ G+ + ++ AD G F +C+ LA+L
Sbjct: 1575 DAAPTVKLDREVSVEDGGEFFFKYITQDRTGLVATRQLLLADSHAEGLFHPDCLKLAQLH 1634
Query: 876 ATAVDSPKTGKIVTMPSHLKP----KKYPDFMEIEEYQTYKSNKILGRLYRQI 924
+ VD+ K+G V H P + PDF+ + +Y+S+K LG LYR I
Sbjct: 1635 SNCVDAAKSGSFVQQ--HAVPRVTQRGLPDFLTNDAPDSYRSSKALGHLYRAI 1685
>gi|409080815|gb|EKM81175.1| hypothetical protein AGABI1DRAFT_56593 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1176
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 170/593 (28%), Positives = 263/593 (44%), Gaps = 108/593 (18%)
Query: 410 DRFLRVTFMDE-GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
D FLRV F +E GLQ + +D+ + + R+ IL + + G
Sbjct: 432 DNFLRVEFREEDGLQYR-----------LDRDVNG-----RASLRHRISPILKEKIVIAG 475
Query: 469 RRYSFLAFSSNQLRDHSAWFF-----SKVGETSVLDIKNWMGEFTAKNI--------AKY 515
R + FLA+S + LR+HS WF S +GE I +G F + A+Y
Sbjct: 476 RSFDFLAYSQSALREHSVWFCRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARY 535
Query: 516 AARMGLCFSSTHAT---VEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQIL 570
AAR+ F++T A VE P DIK N Y+F+DG G ++ D A E+ Q +
Sbjct: 536 AARLSQAFTATEAATFRVEEPQIR-----KDIKTNDKQYIFTDGCGCMSEDFAREIWQTM 590
Query: 571 KLDGSPP----PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEICSW 625
G P AYQIRYAG KG+++ +R SM KF + +EI
Sbjct: 591 HPKGRDSEEDFPRAYQIRYAGSKGMLSVDYKLKGSRTFVVRPSMIKFDAPEAKEIEIVRG 650
Query: 626 TRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL----TASC 680
+ P + NR +I LL L V+ ++ Q +K +A A ++L S
Sbjct: 651 IKNPTPYYFNRPLIMLLEGLGVNYDVLQHFQDKAVAKTQDATLALQDAIDLLENHGLGSS 710
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLT-----YELGELK--------ECQCFIQVSESS 727
+ +T ++ G G L + L +LK + + V++
Sbjct: 711 FRRPSTMQNIIQLGIDALQSDAFYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVAD-- 768
Query: 728 LENCFSKHGSRFAETKK----LQVINGFVVIAKNPCLRPGDVRILEAVDRP------ELH 777
E+ F FA KK + + G V+++++PC+ PGDV+++ A+ RP E+
Sbjct: 769 -EHNFLGKNEIFACIKKSDGEMIYLEGHVLVSRSPCIHPGDVQVVSAIGRPPKGSCFEVE 827
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS-KKSCPPM------ECTP 830
L + +VF KG+RP + G DLDGD+Y NL+P + KS P+ + T
Sbjct: 828 SLQNTVVFSTKGNRPIPSCLGGGDLDGDIY------NLLPLAVHKSLTPLRYFKPGKYTS 881
Query: 831 AEAK----PLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
E K P T ++ +G + N +V AD+S++G D C+ LA+L +
Sbjct: 882 GERKCLDKPSTMKDVADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQLHSD 941
Query: 878 AVDSPKTGKIVTMPSHLKPK------KYPDFMEIEEYQTYKSNKILGRLYRQI 924
AVD PKTG V++ K K P+ ++ + Y S +GRL R I
Sbjct: 942 AVDYPKTGNPVSVAEIPKLKFPLPDWSAPETVDPDPVNYYPSQSAVGRLSRAI 994
>gi|353235419|emb|CCA67432.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1186
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 157/544 (28%), Positives = 256/544 (47%), Gaps = 84/544 (15%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET-----SVLDIKNWMGEFTA 509
R+ + +G + GRR+ FLA+SS+ L++H+ WF + + + I+ +G+F+
Sbjct: 462 RIGEFMKNGLLVAGRRFEFLAYSSSALKEHAVWFMTPFTTSDGQYVTSESIRRSLGDFS- 520
Query: 510 KNI---AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN-GYVFSDGIGKITPDLAME 565
K I ++Y AR+ FSST ++ I E+ +PD + + G +++DG+G ++P +A E
Sbjct: 521 KVIYCPSRYGARLSQAFSSTEPSITIKVNEIRF-IPDKESDQGSLYTDGVGTMSPQVAEE 579
Query: 566 V-------AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT 618
+ PSA+QIR G KG++ C ++ G + +R SM KF S
Sbjct: 580 IWAKYTEPRSKRSRRRLKTPSAFQIRLGGLKGML-CVDSRLQGRVVCVRDSMNKFHSNDR 638
Query: 619 SLEIC-SWTRFQPGFLNRQIITLLSTL-NVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
+EI ++ R FLNR +I LL TL V E F +Q + + + D A +L
Sbjct: 639 EVEIARAFDRPMTMFLNRPLIMLLETLKKVPLEPFMALQTKAVEETRDAMKSFDTAARLL 698
Query: 677 TASCAEQGNTAAIMLSAGF------------KPQTE---PHLQGMLTYE----LGELK-- 715
+ G A L++ F K Q++ P L ML + L +LK
Sbjct: 699 E----QYGLGTAFRLTSVFLQLHKLDVALALKDQSQGLLPFLGRMLQFVENHILRDLKYK 754
Query: 716 ------ECQCFIQVSESSLENCFSKHGSRFAETKKL----QVINGFVVIAKNPCLRPGDV 765
+ VS+ E + +A + + Q + G V+I+++P + PGD
Sbjct: 755 ARIPVPNAWTLVGVSD---EYDYLGENEIYARVRTIDGEEQYLEGPVMISRSPTVHPGDA 811
Query: 766 RILEAVDRPE------LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI--- 816
R++ A+ +P L L +C+VFP KG +G DLDGDLY + D L
Sbjct: 812 RMVWAIGKPSRGAPPGLEDLTNCVVFPCKGHPSLPQCLAGGDLDGDLYCLVLDPQLHFRW 871
Query: 817 --------PPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENC 868
PP + A+ + ++ + LG I ++ AD E DE+C
Sbjct: 872 QFQHGDYDPPQLVTLDRPSTIKDVAQFVINYIKNDLLGVISTRSMLIADIREDCLADEDC 931
Query: 869 ILLAKLAATAVDSPKTGKIV---TMPSHLKPKKYPDFMEIE----EYQTYKSNKILGRLY 921
+ LAKL + AVD PKTG+ V MPS L+ + PD+ E + + Y+SN+ +G L+
Sbjct: 932 VKLAKLHSIAVDYPKTGRHVEFEQMPS-LESNRRPDWHANELNDNDPELYQSNRHIGHLF 990
Query: 922 RQIK 925
R I+
Sbjct: 991 RAIE 994
>gi|380493792|emb|CCF33621.1| RNA dependent RNA polymerase, partial [Colletotrichum higginsianum]
Length = 1278
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 203/807 (25%), Positives = 331/807 (41%), Gaps = 174/807 (21%)
Query: 346 LKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLES 405
L H++ ++P+ KD + L++ P + A V + ++TPT+
Sbjct: 411 LDHLFVIEKPL----RSEKDYRSALLE-------PNMGNHHALVFKAMVTPTRITLHGPE 459
Query: 406 KDVADR-----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFK 454
+ +R F+RVTF DE + + P V S+ Q +F
Sbjct: 460 PEPMNRILRRFPNQTSYFIRVTFCDEDGGDL-------FFNPRV------SYDQ---IFD 503
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF---FSKVGETSVL--DIKNWMGEFTA 509
R + +L+ G + GR Y FL FS + LR HSAWF F G L +I +G+F
Sbjct: 504 RYREVLNGGIPIAGRIYQFLGFSHSSLRSHSAWFSAPFVDDGGKLQLYGNIIKALGDFEH 563
Query: 510 KNI-AKYAARMGLCFSSTHATVEIPPTEVDH-ELPDIK-RNG---YVFSDGIGKITPDLA 563
I AK AAR+G FS T +++ + H +PD+K ++G VFSDG+G I+ D+
Sbjct: 564 IEIPAKCAARIGQAFSETPTFIKLAENRIRHSNIPDVKSQDGDIERVFSDGVGTISQDV- 622
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEI 622
+E+ GS P+ QIR+ G KG+++ R SM+KF S +LEI
Sbjct: 623 LELVWPRLPRGSLIPTCLQIRWGGVKGMLSLDSRLMGRTICVRRESMEKFPSNDVENLEI 682
Query: 623 C-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASK--------------LNLMLV 667
C + +R LNRQ+I ++ L V +F +Q + L+L V
Sbjct: 683 CDAASRPLKLVLNRQMIKIMEDLGVDSNLFLQLQKKEVDRLRAVTADAYNTGTFLHLQGV 742
Query: 668 ASDVAFEVLTASCAEQG------------------NTAAIMLSAGFKPQTEPHLQGMLTY 709
S L S G ++ P E +
Sbjct: 743 GSTFFLPSLIKSLKNYGIDYRRDSFLRAVVESTVLQELRLLKHKARIPVPEGATLFGIMD 802
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+E + ++ C+ + K + +G V++ ++P L PGD++ +
Sbjct: 803 ETGFLREGEVYV---------CYDTYKRPGKSPMKNSLRDGPVLVTRSPALHPGDIQYVN 853
Query: 770 AVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
P H +L +C+ F Q+G R + SG DLDGDLY + WD+ P K++
Sbjct: 854 MRTPPPGHPLRNLRNCIAFSQRGHRDLPSMLSGGDLDGDLYNIIWDKAAAP--KRTFKAA 911
Query: 827 ECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAK 873
+ +PL V ++ LG I H++ +D+ G ++C+ LA
Sbjct: 912 DYPRVTPEPLGRPVERKDMANWFVDFMKSDVLGLIATRHLILSDQDPVGTLGQDCLKLAG 971
Query: 874 LAATAVDSPKTGKIVTMPSHL--KPKKYPDFM---------------------------- 903
L +TAVD KTG + P + P+ PDF+
Sbjct: 972 LHSTAVDFSKTG-VAVEPRDIPKAPQFRPDFLAPAPPAQLYDRTQINFLGRDEGVDDDDE 1030
Query: 904 --EIEEYQTYKSNKILGRLYRQI--KGAYDENIS-VSSEV-----------------DIN 941
++ Y+S KILG LYR + K +DE+IS V S+ + +
Sbjct: 1031 DAAGPNHKYYRSEKILGVLYRNVDEKQIWDEDISRVVSKTGPSVWAQFVGLMQRKIKEYS 1090
Query: 942 PVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY-NVNRKEFRHIWSMPKYNSR 1000
I ++T LE +A++ + Y+ + G + QY + + K+ +
Sbjct: 1091 AGLIRWETRLE---------EAKSLRNVYEDTVGGFMTQYSDSHMKQLTEVEVFCGSIFN 1141
Query: 1001 KQGELQERLKHSYSAFRKEFRQVFEKM 1027
K G R K + ++EF ++ E M
Sbjct: 1142 KSGSQTRRQKDNSKKLKQEFDRLAEHM 1168
>gi|449547217|gb|EMD38185.1| hypothetical protein CERSUDRAFT_113336 [Ceriporiopsis subvermispora
B]
Length = 1207
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 177/638 (27%), Positives = 279/638 (43%), Gaps = 124/638 (19%)
Query: 378 EGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
EGP I +RR V DRF+RV F DE + L Y A
Sbjct: 420 EGPYVIQSNRVIRRYV-------------GFQDRFIRVDFRDE-------DRLQYRWA-- 457
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS-----KV 492
K++ +S + RV IL GF+L GRR+ FLA+S++ LR+H+ WF + +
Sbjct: 458 -KEVDGSSL-----LHDRVGGILRKGFDLAGRRFEFLAYSTSALREHAVWFMNPFEHPRE 511
Query: 493 GETSVLDIKNWMGEFTAKNI----AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG 548
G + I+ +G+F+ + +KYAARM F++T +V I + + +PD+ +
Sbjct: 512 GLVTAQGIRESLGDFSGSKVIKQPSKYAARMAQAFTATDPSVSITRDQWE-TVPDLGEDP 570
Query: 549 YVFSDGIGKITPDLAMEVAQIL---KLDG---SPPPSAYQIRYAGYKGVVACWPAKDDGI 602
Y+++DG+G I+ +L + L DG PSAYQIR+ G+KGVVA + GI
Sbjct: 571 YLYTDGVGTISAELGDMIWDALCAASPDGKRRGVKPSAYQIRFLGFKGVVAV-DERLQGI 629
Query: 603 RMSLRGSMKKFKS-----CHTSLEICSWTRFQPG--FLNRQIITLLSTLNVSDEIFWTVQ 655
+M LR SM KFK+ +EI + PG +LNR ++T+L V F +Q
Sbjct: 630 KMRLRPSMDKFKARADEEAEAKIEIARAFDY-PGTCYLNRPLVTVLEDRGVDKSAFMRLQ 688
Query: 656 ASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSA----GFKPQTEPH--------- 702
+ +++ + A VL A+ G +L G E +
Sbjct: 689 ERIKAEIYTASDSLAQAISVLKANSIGNGYKLGFILQGLKNIGMGLPYEKNVQVLNDSFI 748
Query: 703 ---LQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV------------ 747
LQ Y L +K I + ES L + G + V
Sbjct: 749 DRLLQYAKNYVLRNIKH-DARIPIPESYLLVGIADEGPAYEAEGCENVYILPEGHIYACV 807
Query: 748 ----------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLC------DCLVFPQKGD- 790
+ G +++ ++P + PGDV+ + A+ +P +C + +V P G+
Sbjct: 808 QHPDDPEPIYLEGNIMVTRSPTVHPGDVQQVTAIGKPPEGKICFFRNLKNVVVLPSTGNC 867
Query: 791 -----RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP---------- 835
R + G DLDGDLY V L+P + E
Sbjct: 868 GGDCPRSLASCLGGGDLDGDLYQVVKYAPLVPLESQLAGSYESAGTHTLDRDSTVDDIID 927
Query: 836 -LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV---TMP 891
+ +++ LG + + H++ AD+S+YG D +C+ LA+L + AVD PK G V P
Sbjct: 928 FIVEYIDSDVLGLLSDRHLMIADQSKYGVNDPSCLELARLCSQAVDYPKNGIPVDKGDAP 987
Query: 892 SHLKPKKYPDFMEIEEYQT-----YKSNKILGRLYRQI 924
L P K P++ + E+ + Y+SN+ LG L+R I
Sbjct: 988 RTLLPYK-PNWKQAEDNDSRPTDYYESNRALGELFRNI 1024
>gi|393235346|gb|EJD42902.1| RNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1654
Score = 169 bits (428), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 147/471 (31%), Positives = 221/471 (46%), Gaps = 56/471 (11%)
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNW-MGEFT-AKNIA 513
+K L+ G L R+Y F S +QLR+ F + LD + + G+F+ N+A
Sbjct: 80 IKRFLAAGLFLDDRQYRFYHHSPSQLRERGC-FLREAASDEELDARIYSYGDFSRINNVA 138
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL- 572
K A R+GL FS + P + ++ DI +FSDG G ++ LA+ +++ K+
Sbjct: 139 KRAKRIGLLFSGASIDYNLDP-QFTEDIDDIIVGNELFSDGCGLVSRRLAVALSRQKKIV 197
Query: 573 --DGSPPPSAYQIRYAGYKGVVACWPAKD--DGIRMSLRGSMKKFKSC--HTSLEICSWT 626
PS +QIRY GYKGV+ P D G R SMKKF + T + T
Sbjct: 198 FRGARYTPSVFQIRYRGYKGVLMLHPELDRSHGPLAQFRRSMKKFNATLDDTFTVVGYST 257
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVA-SDVAFEVLTASCAEQGN 685
+ G LN +I L+S+L +++E T+ A A + +L A SDV+ V SC
Sbjct: 258 PYAFGRLNNDVIVLISSLGITNE---TLLAKQAEYFDWLLRAVSDVSCAVDLLSCLGDFA 314
Query: 686 TAAIMLSAGFKP-QTEPHLQGMLTYEL-------GELKE-------------CQCFIQVS 724
A +L G + L G+++ E+ G L+ C F +
Sbjct: 315 MAERVLLDGLDADHVQKALAGIVSREVKSFRKDNGRLRSRMIIRKSRLLFGVCDPFGVLR 374
Query: 725 ESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
E + S G + A T + + V++ KNPCL PGDV L AV+ P L HL DC+V
Sbjct: 375 EGEVHVRVSA-GRQPATT----LTHCDVLVVKNPCLHPGDVLKLHAVENPRLAHLVDCVV 429
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQN 844
FP G R + SGSDLDGD ++V WD ++I PSK + P + P + ++ ++ Q+
Sbjct: 430 FPSVGKRAPASMTSGSDLDGDQFFVCWDSDII-PSKTTDPYL--YPKGKEQISRSISRQD 486
Query: 845 L------------GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
L ++ H A S+ GA C+ L+ L + AVD K
Sbjct: 487 LAAHFAAYSGASIAKVAGLHSKWARHSQQGAMCTECLELSALHSLAVDGGK 537
>gi|325095101|gb|EGC48411.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1209
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 168/596 (28%), Positives = 249/596 (41%), Gaps = 136/596 (22%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV F+DE + + Y + I + F K++L G N+ GR
Sbjct: 453 DHFLRVEFVDE-----TGDPVRYDPRASIDMIFESRF----------KTVLKSGINIAGR 497
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVL----DIKNWMGEFT-AKNIAKYAARMGLCFS 524
++ FL FS + LR + WF + + +L I +G F ++ AK AR+G FS
Sbjct: 498 KFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHIQSPAKQVARIGQTFS 557
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIR 584
T ++ I + D++RNG VFSDG+G
Sbjct: 558 DTLTSIPISDKYISIG-KDVERNGRVFSDGVGA--------------------------- 589
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT----SLEIC-SWTRFQPGFLNRQIIT 639
KG+++ ++ G + LR SM KF ++ ++EIC S + P FLN Q+I
Sbjct: 590 ----KGMISL-DSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPLPFFLNAQLIK 644
Query: 640 LLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA---------IM 690
+L L V D +F +QA S+L ++ A L E N A I+
Sbjct: 645 ILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFL-----EDTNIAKSVGLPWLINIL 699
Query: 691 LSAGFKPQTEPHLQGMLTYE-LGELKECQCFIQVSESSLENCFS--------KHGSRFAE 741
G + + L+ ++ L +L++ + ++ + F K G F
Sbjct: 700 EGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVFCT 759
Query: 742 T-----KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPH 793
+ + ++N VV+ ++P + PGDV+I AVD P L L +C+ F Q G R
Sbjct: 760 SLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDL 819
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHV 840
+ SG DLDGDLY V +D L+P K+ P E + K L +
Sbjct: 820 PSMLSGGDLDGDLYNVIFDNTLLP--KRIARPAEYPRVQEKVLGRAVVREDIIDFFVTFM 877
Query: 841 NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKY 899
LG+I H ADR G FD C+LLA+L +TAVD KTG V + K P
Sbjct: 878 QQDQLGRIATIHQALADRRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCR 937
Query: 900 PDF------MEIEE-------------------------YQTYKSNKILGRLYRQI 924
PDF + I E + YKS ILG+LYR I
Sbjct: 938 PDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSI 993
>gi|340960580|gb|EGS21761.1| hypothetical protein CTHT_0036280 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1520
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 194/411 (47%), Gaps = 38/411 (9%)
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKR-NGYVFSDGIGKITPDLAMEVAQILKL-- 572
A R+GL FS+ IPP V+ ++PDI+ +GYVF+DG G I+P LA ++A+ L +
Sbjct: 2 AKRIGLLFSTARVAKVIPPDRVE-DIPDIESPDGYVFTDGCGLISPHLAQDLARRLGIVF 60
Query: 573 -DGSPPPSAYQIRYAGYKGVVACWP--AKDDGIRMSLRGSMKKFKSCHT-SLEICSWTR- 627
D PS QIRY GYKGVV P D I + +R SMKKF S + +++
Sbjct: 61 RDRRYTPSVLQIRYRGYKGVVTVDPRMTSDPRILLRMRKSMKKFSGGDDHSFSVVEYSKP 120
Query: 628 FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA-SCAEQGNT 686
F GFLN ++I LL+ L V EI Q + L AF L+ + + +
Sbjct: 121 FTYGFLNDEVIVLLNALGVDREIIKKKQDNHFKFLADASRDPRSAFRFLSGLNMPDLAES 180
Query: 687 AAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETK--- 743
+ +P+ ++ L + +E +C I + +S L E +
Sbjct: 181 VLVESFDAIRPRIRSLVKNEYAKMLNKREEQKCRILIPKSRLLFGVCDAWGVLKEGECAV 240
Query: 744 ---------KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT 794
+ + N V++ +NPCL PGD++ V+RPEL HL DC+VF KG RP
Sbjct: 241 KITLEENGLPMALKNCEVLVTRNPCLHPGDLQKFRVVERPELSHLVDCIVFSTKGKRPAA 300
Query: 795 NEASGSDLDGDLYYVTWDENLIPP--SKKSCPPMECTPAEAKPLT--------CHVNHQN 844
+ SG DLDGD ++V WD +LIP S+ + P P P+T + +
Sbjct: 301 DMMSGGDLDGDTFFVCWDLDLIPKTLSQPAKYPGVKEPIRFTPITDDDRLEFFVRYTNAS 360
Query: 845 LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
LG++ N ++ A G C L +L + VD G + +P L+
Sbjct: 361 LGRVKNLYLDWARAG--GPMSPECQELNRLFSQCVD----GNRIKIPPRLE 405
>gi|390597813|gb|EIN07212.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1217
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 172/623 (27%), Positives = 270/623 (43%), Gaps = 133/623 (21%)
Query: 410 DRFLRVTFMDE-GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
+ F+RV F +E GLQ +++ SF + +RV IL +GF L G
Sbjct: 438 EHFVRVDFREEDGLQYRWD-----------REVDCRSF-----LAERVGRILKEGFELAG 481
Query: 469 RRYSFLAFSSNQLRDHSAWFF-----SKVGETSVLDIKNWMGEFT-----------AKNI 512
R + FLA+SS+ L+ H+ WF + G I++ +G+F+ AK I
Sbjct: 482 RHFQFLAYSSSALKQHAVWFVHPFEHHEKGSVDAYIIRDRLGDFSGAIDNNNETRDAKTI 541
Query: 513 ------AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
+KYAARM F++T +V I + E+PD+ + ++ +DG G I+ LA +
Sbjct: 542 QLRMQPSKYAARMAQAFTATDPSVRINEDQW-QEIPDLGKEPHLHTDGCGTISRKLADMI 600
Query: 567 AQILKLDG------SPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-- 618
L D P YQIR+ GYKG+V +G +M LR SM KF++ T
Sbjct: 601 WAALCKDRPYFQACKSSPDCYQIRFLGYKGIVTV-DETLEGEQMCLRPSMNKFRAHKTPS 659
Query: 619 -SLEICS--WTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV 675
+EI W Q LNR +I +L VS + F +Q +N + D +
Sbjct: 660 AEIEIAKPFWKPTQVN-LNRALIMILEDRGVSWKCFMKLQDEAVRDINTASFSIDNFVRM 718
Query: 676 LTASCAEQGNTAAIM--------LSAGFK------PQTEPHLQGMLTY----ELGELKEC 717
L+ A G+ ++ L FK P + P + ++ + L E+K
Sbjct: 719 LSDRGAGLGSNYRLLYIMRNLAELGFDFKQRLRVQPLSHPFILRLVEFIRHHLLREIKHG 778
Query: 718 --------------------------QCFIQVSESSLENCFSKHGSRFAETKKLQVINGF 751
Q +++E+ + C G E K L+ G
Sbjct: 779 ASIPLRDAYLLPGVADEGPAYEARGHQNVFKLAENRIFACV--QGPDDVEPKWLK---GN 833
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGD 805
VI ++P + PGD++ + A+ +P LC + +V P G+R + G DLDGD
Sbjct: 834 CVIWRSPVVHPGDIQRVYAIGKPPEDQLCFFSRLKNVVVLPSVGERSLASCLGGGDLDGD 893
Query: 806 LYYVTWDENLIPPSKKSCPPMECTPAEAKPL--------TC-----HVNHQNLGQICNAH 852
Y V+ L+P ++ PP E P E L C +V+ LG + + H
Sbjct: 894 EYCVSMLPTLLPTEQQ--PPAEYPPVETLTLDRPAEIDDICDFIVEYVHSDVLGLLSDKH 951
Query: 853 VVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-----PDFMEIE- 906
+V AD+S+ G DE C+ LA+L + AVD K G + + + K PD+ E
Sbjct: 952 LVIADQSKDGVRDEKCLRLAELCSQAVDYAKNGIAINLAKEKRAMKQLIPFKPDWHAAEI 1011
Query: 907 ----EYQTYKSNKILGRLYRQIK 925
Y+S++ LG LYR+I+
Sbjct: 1012 ISPRSTDYYESSRALGHLYREIR 1034
>gi|443899804|dbj|GAC77133.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1455
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 187/641 (29%), Positives = 282/641 (43%), Gaps = 110/641 (17%)
Query: 376 LNEGPKNIDDIAEVRRLVITPTKAYW---FLESK--------DVADRFLRVTFMDEGLQT 424
L E N A V + ITPT+ F+++ D F+RV F DE
Sbjct: 430 LLEEQTNPTATAHVYHVTITPTRMLLDGPFMDASNRVLRMFPDFGSHFVRVAFCDEDGDR 489
Query: 425 MNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDH 484
+ + I S SF V +R+ L G + GR++ LA+S + L H
Sbjct: 490 FPVSRHD------LDGIDSESF-----VRERIGDPLKYGIAIAGRKFEALAWSGSGLGSH 538
Query: 485 SAWFFS----KVGET-SVLDIKNWMGEFTAKNIAKYAARMGL----CFSSTHAT------ 529
WF + KVG+ I+ +G F ++I +Y AR+G FS+T ++
Sbjct: 539 HCWFVTAFTDKVGKLWDAERIRQALGNF--RSIDRYPARLGARLSQAFSATSSSITIEND 596
Query: 530 -VEIPPTEVDHEL-----PDIKRNGYVFSDGIGKITPDLAMEVAQIL----------KLD 573
VEI P E+ + P+ R Y+ +DG+G+I+ L E+ L +L
Sbjct: 597 WVEIIPDELSNAQMPSNGPERDRKYYLLTDGVGQISKSLLDEIWHALCETRGMRREWRLS 656
Query: 574 GSPP---PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEICSWTRFQ 629
P PSA Q R G KGV+ C G +M +R SM KF + H LE+ + + F
Sbjct: 657 QQDPRRIPSAIQFRCGGAKGVL-CLNPTLKGKKMIMRESMIKFSAPKHRELEVAAHS-FS 714
Query: 630 P--GFLNRQIITLLSTLNVSDEIFWTVQASMASKLN----LMLVASDVAFEVLTASCAEQ 683
P LNR +I L L V D++F +QAS AS + + AE
Sbjct: 715 PLPARLNRPLINALEDLGVKDDVFLNLQASAVESAQEARKSFKRASQLMGSFAMSDAAEM 774
Query: 684 GNTAAIMLSA-GFKP-QTEPH--LQGMLTY----ELGELKECQCFIQVSESSL-----EN 730
+ S G +P + +P L + T LG+LK + I V +L E
Sbjct: 775 HKLFRRLDSVIGMRPDELDPDSILHRLCTIVIAAALGDLKR-KARIPVQGCTLIGVVDEF 833
Query: 731 CFSKHGSRFAETK-----KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDC 782
F + G FA+ + +++ G V++ ++P + PGDVR++ AV P H L +
Sbjct: 834 NFLERGQIFAQVNDRDQDEFRIVEGKVMVGRSPTIHPGDVRVVSAVKPPPGHPLLQLRNV 893
Query: 783 LVFPQKG-DRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE--AKPLTC- 838
+VF + RP + SG DLDGD+Y + D++L P +S + P A+P T
Sbjct: 894 IVFSKSPFGRPLQSILSGGDLDGDIYTIYEDKDLFPTRTESPGQYKSVPPRSLARPCTFE 953
Query: 839 --------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI--- 887
+V + +G + H+ AD S + D +CI LA+L A AVD KTG+
Sbjct: 954 DLADFFVDYVINDQVGLVSTFHLHIADTSPLHSLDPDCIKLAQLHAKAVDYRKTGQAVHR 1013
Query: 888 --VTMPSHLKPKKYPDFMEIEEY--QTYKSNKILGRLYRQI 924
V MP P+ PDF+ Y S + LG+L+R I
Sbjct: 1014 RDVPMPPFNSPR--PDFLAQRPAGPGIYSSTRALGKLFRAI 1052
>gi|388851646|emb|CCF54642.1| related to RNA-directed RNA polymerase [Ustilago hordei]
Length = 1557
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 169/622 (27%), Positives = 276/622 (44%), Gaps = 98/622 (15%)
Query: 383 IDDI-AEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVL 430
+DD+ + + + +TPT+ V++R F RVTF +E L
Sbjct: 413 VDDVYSPMLHIDVTPTRILLHGPHYHVSNRVIRSYPNHWHHFARVTFTNEDRD------L 466
Query: 431 SYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS 490
+ + P S + Q RV ++L G N+ GR + LA+SS+ + H+ WF +
Sbjct: 467 ATSIRPNYGFDDSERYIQS-----RVLNVLLHGLNVAGRHWDLLAWSSSSISTHTVWFVT 521
Query: 491 KVGETS--VLD---IKNWMGEFT--AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD 543
+ + +D I++ +G+F+ K+ A Y AR+ FS+T T+ +P + + H PD
Sbjct: 522 PFVDNNGQRIDANVIRSRLGDFSDVIKSPALYGARLSQAFSATAHTISVPASHI-HAKPD 580
Query: 544 -IKRNGYVFSDGIGKITPDLAMEV----------AQILKLDGSPPPSAYQIRYAGYKGVV 592
+ G ++DG+G+I+P+L EV + KL + PSA Q+R G KGV+
Sbjct: 581 KVSEQGMPYTDGVGQISPELMAEVWTSFLAAHGEGRKRKLLKAAAPSAIQMRLGGSKGVL 640
Query: 593 ACWPAKDDGIRMSLRGSMKKFKSCHTSLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIF 651
A P + G + +R SM KF S H LE+ + TR +P LNR +I L V F
Sbjct: 641 AVNP-RLRGKVLIIRPSMTKFGSPHQDLEVANASTRARPAKLNRPLINALEDRGVPASAF 699
Query: 652 WTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-- 709
+Q + ++ + F+ C+ L + F+ L G +
Sbjct: 700 MEIQDEAIT----LIGRARSDFQAAARLCSAFSFGTGCNLRSLFQKLHSLGLGGKTVHVD 755
Query: 710 -------------ELGELKECQCFIQ--VSESSLENCFS--KHGSRFAETKKLQ------ 746
LG++K V+ + + FS K G FA+ + ++
Sbjct: 756 SFFLVIAKSVTAAALGDMKRKARIPTRGVTMLGIADEFSLLKEGEVFAQVESVESGKVTR 815
Query: 747 -VINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQ-KGDRPHTNEASGSD 801
++ G +I ++P + P DV +++ V P H L + +VF D+P G D
Sbjct: 816 RILVGRNLIGRSPTVDPADVAMVKCVKPPPGHPLLQLRNVIVFDTCSRDQPFPRRLGGGD 875
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPM--ECTPAE----------AKPLTCHVNHQNLGQIC 849
DGDLY + D+ L +++S + PAE A T + + +G +
Sbjct: 876 CDGDLYTIYEDDRLFTKAQQSAMTFHPKIAPAELSRDCGSYELAFFFTQFMLNDFIGLVS 935
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV---TMPSHLKPKKYPDFMEIE 906
+ H+ AD SE G+ D C LA+L + A D KTG V MP H +P PDF+
Sbjct: 936 STHLRIADISELGSHDSRCKTLARLHSQATDFKKTGYAVDRSQMPRHREP-IIPDFLAQG 994
Query: 907 EYQ----TYKSNKILGRLYRQI 924
E + Y S++ LG LYR +
Sbjct: 995 EKREGKLVYSSSRALGYLYRAV 1016
>gi|154272513|ref|XP_001537109.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409096|gb|EDN04552.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1209
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 173/632 (27%), Positives = 265/632 (41%), Gaps = 138/632 (21%)
Query: 380 PKNIDDIAEVRRLVITPTKAYW---FLESKDVA--------DRFLRVTFMDEGLQTMNAN 428
P N + I+ + R ITP Y E+K+ D FLRV F+DE +
Sbjct: 413 PMNPNHIS-IHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDE-----TGD 466
Query: 429 VLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
+ Y + I + F K++L G N+ GR++ FL FS + LR + WF
Sbjct: 467 PVRYDPRASIDMIFESRF----------KTVLKSGINIAGRKFEFLGFSHSSLRSQTCWF 516
Query: 489 FSKVGETSVL----DIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD 543
+ + +L I +G F ++ AK AAR+G FS T ++ I + D
Sbjct: 517 VAPFYKDRILYNASTIIQNLGRFDHIQSPAKQAARIGQTFSDTLTSIPISDKYISIG-KD 575
Query: 544 IKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR 603
++RNG VFSDG+G KG+++ ++ G
Sbjct: 576 VERNGRVFSDGVGA-------------------------------KGMISL-DSRKKGKS 603
Query: 604 MSLRGSMKKFKSCHT----SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASM 658
+ LR SM KF ++ ++EIC S + P FLN Q+I +L L V + +F +QA
Sbjct: 604 LVLRPSMIKFHLPNSYNAFNIEICGSGLKPLPFFLNAQMIKILEDLGVDESVFLRLQADE 663
Query: 659 ASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSA----GFKPQTEPHLQGMLTYE-LGE 713
S+L ++ A L + + +++ G + + L+ ++ L +
Sbjct: 664 ISRLRATATSTAKAARFLEDTNIAKSVGLPWLINVLEGFGLRHSNDEFLRRVMELSVLIK 723
Query: 714 LKECQCFIQVSESSLENCFS--------KHGSRFAET-----KKLQVINGFVVIAKNPCL 760
L++ + ++ + F K G F + + ++N VV+ ++P +
Sbjct: 724 LRDLKYRARIRVPNAVTLFGIMDETGILKEGEVFCTSLSDKGVREVLVNPRVVVTRSPAM 783
Query: 761 RPGDVRILEAVDRPE---LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
PGDV+I AVD P L L +C+ F Q G R + SG DLDGDLY V +D L+P
Sbjct: 784 HPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLP 843
Query: 818 PSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAF 864
K+ P E + K L + LG+I H AD+ G F
Sbjct: 844 --KRIARPAEYPRVQEKVLGRTVVREDIIDFFVTFMQQDQLGRIATIHQALADQRPLGTF 901
Query: 865 DENCILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDF------MEIEE---------- 907
D C+LLA+L +TAVD KTG V + K P PDF + I E
Sbjct: 902 DPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMD 961
Query: 908 ---------------YQTYKSNKILGRLYRQI 924
+ YKS ILG+LYR I
Sbjct: 962 AVQDGGDEDDDERPAVRFYKSENILGKLYRSI 993
>gi|343428005|emb|CBQ71530.1| related to RNA-dependent RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1505
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 185/634 (29%), Positives = 275/634 (43%), Gaps = 105/634 (16%)
Query: 382 NIDDIAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDEGLQTMNANVL 430
N A+V + ITPT+ D ++R FLRV F DE + +
Sbjct: 459 NSTATAQVFHVTITPTRTLLEGPFMDASNRVLRLFPEFGSHFLRVAFCDE-----DGDRF 513
Query: 431 SYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS 490
DI S SF V +R+ + L +G ++ GRR+ LA+S + L H WF +
Sbjct: 514 PVSRHDFADDIDSESF-----VRERIGTPLKEGIDIAGRRFEALAWSGSGLGSHHCWFVT 568
Query: 491 KVGET-----SVLDIKNWMGEFT--AKNIAKYAARMGLCFSSTHAT-------VEIPPTE 536
+ + I+ +G F+ A++ AR+ FS+T +T ++I +
Sbjct: 569 AFTDKDGKWWNAERIRASLGNFSRVENQPARFGARLSQAFSATSSTIRISDDWIQIVEDD 628
Query: 537 VDHEL-PDIKRNG------YVFSDGIGKITPDLAMEVAQIL-------------KLDGSP 576
H L P NG Y+ +DG+G+I+ L E+ + L + D +
Sbjct: 629 FSHALMPSSNGNGRSSKQRYLLTDGVGEISRALLNEIWRELCAVKNMRREWTLCEQDAAR 688
Query: 577 PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC-HTSLEICSWTRFQ--PGFL 633
PSA Q R G KGV+ C + G M +R SM KF + H LE+ + T F P L
Sbjct: 689 IPSAIQFRLGGAKGVL-CLNPQLKGKVMKVRHSMIKFSAPEHRDLEVAT-TSFSALPARL 746
Query: 634 NRQIITLLSTLNVSDEIFWTVQ----ASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI 689
NR +I L L V +F T+Q S S AS + + AE
Sbjct: 747 NRPLINALEDLGVPAHVFLTLQDKAVESAQSARKCFRRASQLMGTFALSDTAEMHRLFRR 806
Query: 690 MLS-AGFKPQTEPHLQGMLTY--------ELGELKECQCFIQVSESSL-----ENCFSKH 735
+ S G +P P G+L LG+LK + I V +L E F +
Sbjct: 807 LDSIVGIQPDQLP-ADGILNRLCTIVIAAALGDLKR-KARIPVDGCTLIGVVDEFGFLQK 864
Query: 736 GSRFAETK-----KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQ 787
G FA+ + G V++ ++P + PGDVR++ AV P H L + LVF +
Sbjct: 865 GEIFAQVDYGKDGSFTAVEGRVMVGRSPTIHPGDVRVVNAVVPPRGHPLWQLRNVLVFNK 924
Query: 788 -KGDRPHTNEASGSDLDGDLYYVTWDENLIP-----PSK-KSCPPME----CTPAE-AKP 835
RP + SG DLDGD+Y + D L P P + K+ P CT A+ A
Sbjct: 925 CPTGRPLQSILSGGDLDGDIYTIYRDPQLFPKRIESPGQYKTVAPRSLAAPCTFADLADF 984
Query: 836 LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV---TMPS 892
+V + +G + + H+ AD+S + D +CI LA+L A AVD KTG+ V +P
Sbjct: 985 FVDYVINDQVGLVSHFHLQIADKSHLHSLDPDCIRLAQLHAKAVDYRKTGQAVHRRDVPM 1044
Query: 893 HLKPKKYPDFM--EIEEYQTYKSNKILGRLYRQI 924
+ PDF+ Y S + LG+LYR I
Sbjct: 1045 PPFGAERPDFLVQRPAGPGIYPSTRALGQLYRAI 1078
>gi|169844306|ref|XP_001828874.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
gi|116509986|gb|EAU92881.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
Length = 1232
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 168/602 (27%), Positives = 263/602 (43%), Gaps = 115/602 (19%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRVTF DEG +N + V +R L +G + R +
Sbjct: 458 FLRVTFADEGRLQYRSN--------------DRELDHEAFVRERFGEFLLNGLTIAKRHF 503
Query: 472 SFLAFSSNQLRDHSAWFF-----SKVGETSVLDIKNWMGEFTAKNI--------AKYAAR 518
FLA+S + L++HS WF +K G + I + +G F + A+YAAR
Sbjct: 504 RFLAYSQSALKEHSVWFVKPFVDTKHGLVNAESIIHSLGNFDGLDFDSQLMHCPARYAAR 563
Query: 519 MGLCFSSTHATVEIPPTEV----DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILK--- 571
+ F++T A + I E+ D E+ + Y F+DG+G ++P+LA E+ + LK
Sbjct: 564 LSQAFTATDACI-IEVEEIINGRDIEVVSPEGQKYCFTDGVGTLSPELAREIWKHLKRTK 622
Query: 572 -----LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEIC-S 624
+ G P+AYQ+R+ G KG+++ + G + LR SM KF++ ++ ++EI S
Sbjct: 623 RRARSVKGH--PAAYQVRFMGSKGMLSV-DYRLQGSTIYLRPSMIKFEAPNSRAIEIARS 679
Query: 625 WTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN----------LMLVASDVAFE 674
+ R P FLNR +ITLL L V F Q + ML +
Sbjct: 680 FDRPTPYFLNRPLITLLEGLGVPLSTFKFFQDRAVRETQQAASSLATAAAMLDTYGLGAS 739
Query: 675 VLTASCAEQGNTAAI-------MLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESS 727
S N I LS + L+ + + + + V++
Sbjct: 740 FRLPSVMNSLNKLGIPVLNQDRFLSRAMEYAINHILRLLKNHARIPVPGAWTLVGVADV- 798
Query: 728 LENCFSKHGSRFAETKKLQ----VINGFVVIAKNPCLRPGDVRILEAV-----DRPELHH 778
+ F + FA K L + G V+I+++P + PGDV++++A+ D P H
Sbjct: 799 --HRFLQPRQIFAYVKPLNSRGIYLEGPVLISRSPTIHPGDVQLVQAIGHPPPDSPFAHE 856
Query: 779 -LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP-------------PSKKSCP 824
L + +VF GDRP + G DLDGD+Y NLIP P +
Sbjct: 857 PLANTVVFSVLGDRPLPSCLGGGDLDGDIY------NLIPLEDPQRPELRGFTPVRPLQA 910
Query: 825 PMECTPAEAKPLTCHVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILL 871
P + PA+ K L ++ LG I ++ AD+S G +D +C+ L
Sbjct: 911 PSQYAPAQRKILDRKATMRDVAEFVMEYILSDVLGIIAINWLIIADQSPRGIYDSDCLKL 970
Query: 872 AKLAATAVDSPKTGKIVTMPS--HLKPKKYPDFMEIEEYQT------YKSNKILGRLYRQ 923
A L + AVD PKTG V + + LK + PD+ E T Y S+K +G+L+R
Sbjct: 971 ADLHSDAVDYPKTGNPVALTNIPRLKYRTKPDWNAPETVDTSASGNYYTSSKAIGKLFRA 1030
Query: 924 IK 925
I+
Sbjct: 1031 IE 1032
>gi|299753212|ref|XP_002911846.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
gi|298410195|gb|EFI28352.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
Length = 1681
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 166/606 (27%), Positives = 263/606 (43%), Gaps = 117/606 (19%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D+FLRV F DE + L Y +++ + F V RV ++L GF L GR
Sbjct: 920 DKFLRVDFRDE-------DRLQYRWD---REVDGSVF-----VRDRVGTVLKLGFELAGR 964
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVL----DIKNWMGEFTAKNIAK----YAARMGL 521
+ FLA+SS+ LR+H+ WF S + V+ I+N +G+F + K YAAR+
Sbjct: 965 TFEFLAYSSSALREHAVWFMSPFKKDGVIVDAESIRNSVGDFKGTELLKRPSMYAARLAQ 1024
Query: 522 CFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAY 581
F++T +V+I E + ++ D+ Y+F+DG+G I+ LA + + P A+
Sbjct: 1025 AFTATDPSVKIRRGEWE-DVDDLGEKPYLFTDGVGTISSALADRIWAAVGRKNQRRPDAF 1083
Query: 582 QIRYAGYKGVVACWPAKDD---GIRMSLRGSMKKFKS-----CHTSLEICSWTRFQPGFL 633
QIR+ GYKG+V+ D+ GI+M LR SM+KF++ S++ +L
Sbjct: 1084 QIRFLGYKGMVSVDKELDNHPHGIQMRLRPSMRKFENKGEEEDAEIEIAQSFSSPNAAYL 1143
Query: 634 NRQIITL-------------LSTLNVSDEI------------------------------ 650
NR ++ L L L ++D
Sbjct: 1144 NRPLVMLLEDLGARKEDFLRLQNLEIADACTIDESLEQFQKFMSGHGLGRPFGFQYLLRK 1203
Query: 651 FWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYE 710
W + ++S N + D F L S A I SA K L G+ +
Sbjct: 1204 LWNLGLDLSS--NKKGSSIDTPFLHLLRSVAINDVLRDIKHSARIKIPDSYLLVGIA--D 1259
Query: 711 LGELKECQCFIQV---SESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRI 767
G E + + V E ++ C +H E + I G V I+++P GDV+
Sbjct: 1260 EGPAYEKRGYKNVYSLREGNIYACIQRH-----EDDEPTYIQGTVSISRSPVAHRGDVQR 1314
Query: 768 LEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK 821
+ A+ P C + +V P GDR + G D+DGD++ V + L+P +
Sbjct: 1315 VYAIGEPPAGMFCAFRGLRNVVVLPSVGDRSLASCLGGGDVDGDMFSVITCDALLP--SE 1372
Query: 822 SCPPMECTPAEAKPL--------TC-----HVNHQNLGQICNAHVVHADRSEYGAFDENC 868
+ P A K L C ++N LG + + ++ AD+S+ G DE C
Sbjct: 1373 TFEPSAYESAGTKTLDRDSTVEDICDFVVEYINSDVLGLLSDRLLIIADQSKDGFSDEAC 1432
Query: 869 ILLAKLAATAVDSPKTGKIVTMPSHLKPKKY----PDFMEIE-----EYQTYKSNKILGR 919
+ LA+L + AVD PK G V + S+ P+ PD+ E E Y+S + LG
Sbjct: 1433 LALAELCSQAVDYPKQGIPVDLDSNDLPRTLIRCKPDWHAAEVVSPRETDYYRSTRALGF 1492
Query: 920 LYRQIK 925
LYR ++
Sbjct: 1493 LYRAVE 1498
>gi|426197730|gb|EKV47657.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1151
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 169/593 (28%), Positives = 260/593 (43%), Gaps = 108/593 (18%)
Query: 410 DRFLRVTFMDE-GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
D FLRV F +E GLQ + +D+ + + R+ IL + + G
Sbjct: 407 DNFLRVEFREEDGLQYR-----------LDRDVNG-----RASLRHRISPILKEKIVIAG 450
Query: 469 RRYSFLAFSSNQLRDHSAWFF-----SKVGETSVLDIKNWMGEFTAKNI--------AKY 515
R + FLA+S + LR+HS WF S +GE I +G F + A+Y
Sbjct: 451 RSFDFLAYSQSALREHSVWFCRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARY 510
Query: 516 AARMGLCFSSTHAT---VEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQIL 570
AAR+ F++T A VE P DIK N Y+F+DG G ++ D A E+ Q +
Sbjct: 511 AARLSQAFTATEAATFRVEEPQIR-----KDIKTNDKQYIFTDGCGCMSEDFAREIWQTM 565
Query: 571 KLDGSPP----PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEICSW 625
G P AYQIRYAG KG+++ ++R SM KF + +EI
Sbjct: 566 HPKGRDSEEDFPRAYQIRYAGSKGMLSVDYKLKGSRSFAVRPSMIKFDAPEAKEIEIVRG 625
Query: 626 TRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL----TASC 680
+ P + NR +I LL L V+ ++ Q +K A A +L S
Sbjct: 626 IKNPTPYYFNRPLIMLLEGLGVNYDVLQHFQDKAVAKTQDATRALQDAIILLENHGLGSS 685
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLT-----YELGELK--------ECQCFIQVSESS 727
+T ++ G G L + L +LK + + V++
Sbjct: 686 FRLASTMQNIIKLGIDALQSDAFYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVAD-- 743
Query: 728 LENCFSKHGSRFAETKK----LQVINGFVVIAKNPCLRPGDVRILEAVDRP------ELH 777
E+ F FA KK + + G V+++++PC+ PGDV+++ A+ +P E+
Sbjct: 744 -EHNFLGKNEIFACIKKSDGEMIYLEGHVLVSRSPCIHPGDVQVVSAIGKPPKGSCFEVQ 802
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS-KKSCPPM------ECTP 830
L + +VF KG RP + G DLDGD+Y NL+P + KS P+ + T
Sbjct: 803 SLQNTVVFSTKGIRPIPSCLGGGDLDGDIY------NLLPLAVHKSLTPLRYFKPGKYTS 856
Query: 831 AEA----KPLTC---------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAAT 877
E KP T ++ +G + N +V AD+S++G D C+ LA+L +
Sbjct: 857 GERKCLDKPSTMKDVADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQLHSD 916
Query: 878 AVDSPKTGKIVTMPSHLKPK------KYPDFMEIEEYQTYKSNKILGRLYRQI 924
AVD PKTG V++ K K P+ ++ + Y S +GRL R I
Sbjct: 917 AVDYPKTGNPVSVAEIPKLKFPLPDWSAPETVDPDPVNYYPSQSAVGRLSRAI 969
>gi|116200327|ref|XP_001225975.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
gi|88179598|gb|EAQ87066.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
Length = 1176
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 181/685 (26%), Positives = 298/685 (43%), Gaps = 98/685 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSD------SFFDLLR----CQPREVIVTALKHIYSY- 352
+ F ++FL+ A+M L+ +S F+ R QP V V A K ++++
Sbjct: 321 LPFGLLFLLQALMANSYLHPTTISALAQKLAQRFEKARKVGDTQP-PVSVDAFKKLFNWI 379
Query: 353 KRPVFDAYEKLKDV---------QECLIKNPKLNEGP-KNIDDIAEVRRLVITPTKAYWF 402
P+ D + +V +E LI+ + + + A + R V+TP++
Sbjct: 380 DYPMPDGDPTMFEVDGILEYLEKEERLIRESSAHRSRMRETQNRALIFRAVVTPSRITLH 439
Query: 403 LESKDVADR----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGV 452
+ +R F+R F DE Q D+ N+ +
Sbjct: 440 GPEPEPMNRVLRKYPDHSYFIRTQFCDENGQ----------------DLFFNARVSLDSI 483
Query: 453 FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF---FSKVGETSVLD-IKNWMGEF- 507
+ R KS+LS+G + GR Y L FS + LR HSAW F G+ + I +G F
Sbjct: 484 YDRFKSVLSNGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFFHQGQVQIPTLIVTGLGNFD 543
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDIKRNGYVFSDGIGKITPDLAMEV 566
K+ A+ AAR+G FS T +++ V+ E+ DI RN VFSDG+GK++ D+A V
Sbjct: 544 KIKSPARRAARIGQAFSETPWAIDLVAHSVEVWEIDDIVRNEEVFSDGVGKLSQDVARLV 603
Query: 567 AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW- 625
++ P+ +QIR AG KG++A P G + +R SM KF S LEIC
Sbjct: 604 YDVIPRSKG-FPTCFQIRQAGAKGMLAIDPGL-GGKVICIRPSMSKFDSTDKQLEICDMA 661
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN 685
+ P LNRQ+I +L + ++ F +Q+ +L ++S V G
Sbjct: 662 SNPMPMVLNRQLIKILEDMGAPNQWFLNLQSRELQRLR--TISSTVYNTASFLRAQRIGE 719
Query: 686 TAAI------MLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRF 739
+ + + + G + + L+G + L L E + + + N + G
Sbjct: 720 SIRLHKFLRQIETMGLDYRRDDFLRGAVEAVL--LSELRLLKHKARIPVRNGMTLFGI-M 776
Query: 740 AETKKLQVINGFVVIAKNP-----CLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT 794
ET L+ G V + +P PG R+L + G+R +
Sbjct: 777 DETGFLK--EGEVYVTFDPEEDRHSQPPGPGRVLSSS--------AIASSSASGGERSPS 826
Query: 795 NEASGSDLDGDLYYVTWDENLI-------PPSKKSCPPME----CTPAE-AKPLTCHVNH 842
N+ SG DLDGD++++ WD ++ P + P+E TP + A +
Sbjct: 827 NQLSGGDLDGDVFHIIWDPAVVNAVRTFKPAAYPRVQPLELDRPVTPEDIAAFFVDFMRT 886
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
+LG I H++ AD+ E G D +C LA+L + A+ + + M H P+ D
Sbjct: 887 DHLGVIATRHMILADQREKGTLDGDCKKLAELHSAAI-TIHDKSAIDMEEHFAPRGDDDD 945
Query: 903 MEIE--EYQTYKSNKILGRLYRQIK 925
+ +Q Y+S+KILG+LYR ++
Sbjct: 946 DDDSGPRHQYYRSDKILGQLYRAVE 970
>gi|336367253|gb|EGN95598.1| hypothetical protein SERLA73DRAFT_162413 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379975|gb|EGO21129.1| hypothetical protein SERLADRAFT_417518 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1199
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 199/739 (26%), Positives = 330/739 (44%), Gaps = 161/739 (21%)
Query: 303 GVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDAYEK 362
G+ + + F V A++H G+L+ +L D LR P + +V + + A E
Sbjct: 324 GLDWLVAFQVEALLHNGLLSTVELDD-----LRA-PIDRLVQEHRKL---------AGEI 368
Query: 363 LKDVQECLI-KNPKLNEGPKNIDDIAEVRRL-----------------VITPTKAY---- 400
L+ E L ++P NE P+ D+ +L TPT+
Sbjct: 369 LRYFTEALASRSP--NETPRQCFDLVRHSKLKSKLRTSPQGRFFCHHVTFTPTRMLLEGP 426
Query: 401 WFLESKDV-------ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVF 453
+ ++S V D F+RV F DE N +++ + +F +
Sbjct: 427 YIIQSNRVIRNYEGYEDHFIRVDFRDEDRLNYRWN----------RELDALAFLEP---- 472
Query: 454 KRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF---FSKVGETSVL--DIKNWMGEFT 508
RV IL +GF L GR + FLA+SS+ LR+H+ WF FS E V I++ +G+F+
Sbjct: 473 -RVGGILKNGFELAGRDFEFLAYSSSALREHAVWFVNPFSHPTEGWVTSESIRSGLGDFS 531
Query: 509 AK--NIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDL---- 562
+ +KYAARM FS+T +V+I ++ E+PD+ F+DG+G I+ +L
Sbjct: 532 GVIFHPSKYAARMAQAFSATDPSVKIHKSQW-REIPDLGDETTCFTDGVGTISRELGDMI 590
Query: 563 --AMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF---KSCH 617
A+ A+ + + PSAYQIR+ GYKG+VA A+ G++M LR SM KF ++ +
Sbjct: 591 WGALCEARRDHGEHTIKPSAYQIRFLGYKGMVAI-DAQLTGVQMCLRPSMNKFLGKETEY 649
Query: 618 TSLEIC-SWTRFQPGFLNRQIITLL--------STLNVSDEIFWTVQASMAS--KLNLML 666
+EI ++ R LNR ++ +L S + + DE+ + + S + +L
Sbjct: 650 AEIEIARAFERPNLPHLNRPLVMVLEDRGAKRDSFVKLQDEVIAETRMANDSIERFRSLL 709
Query: 667 VASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKEC--------- 717
++ + +Q N + L A QT+ + M + L + + C
Sbjct: 710 EEHNLGHNFRLSPILQQLNALGLELKAD---QTK---EAMDSPFLAQTRSCAINHVLRSV 763
Query: 718 --QCFIQVSESSLENCFSKHGSRFAETKKLQV----------------------INGFVV 753
+ IQ+ +S + + G + + V + G V
Sbjct: 764 KHEARIQIPKSYMLVGVADEGPAYVNAGRDNVFCLPEGKIYACVQKPGDMEPIWLEGLCV 823
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLY 807
I+++P + PGDV+ + A+ +P + LC + +V P G R + G DLDGDLY
Sbjct: 824 ISRSPVIHPGDVQRVYAIGKPPANKLCLFSHLKNVVVLPSVGARSLASCLGGGDLDGDLY 883
Query: 808 YVTWDENLIPPSKKSCPPMECTPAEA-----KPLTC---------HVNHQNLGQICNAHV 853
V + P E PA + +P T +++ +G + + H+
Sbjct: 884 EVIQHSPFLVTEHHD--PAE-YPAGSIFTLDRPSTIEDVCDFVVEYIHSDVVGLVSDKHI 940
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTG---KIVTMPSHLKPKKYPDFMEIE---- 906
V AD+S++G D+NC+ L+ L + AVD PK G I +P L P K PD+ E
Sbjct: 941 VIADQSKHGTLDQNCLKLSALHSQAVDYPKNGIKVDISFLPRSLIPYK-PDWHAAEVDSP 999
Query: 907 -EYQTYKSNKILGRLYRQI 924
+ Y+S++ LG LYR I
Sbjct: 1000 RKTDYYESSRALGYLYRNI 1018
>gi|347841951|emb|CCD56523.1| hypothetical protein [Botryotinia fuckeliana]
Length = 717
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 183/372 (49%), Gaps = 48/372 (12%)
Query: 301 KEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLR-------CQPREVIVTALKHIYSYK 353
K + FE+ + + + + I+N++ + + F + L + R ++ +H YS K
Sbjct: 359 KVNLPFEVRYQLEVCISREIVNEYNIDEKFINSLAELSAQDPAKARNLLEYVAEH-YSSK 417
Query: 354 RPVFD-----------AYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF 402
R ++D ++ L D+ + K P +I + V T +
Sbjct: 418 R-LYDPSSIFTNSEALSFSALTDIPHYCAFSRKATVTPTSILFNSPT---VETTNRVLRH 473
Query: 403 LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKT---GVFKRVKSI 459
++ RFLRV F DE + NS + K +F RV +
Sbjct: 474 YSKENQEGRFLRVQFTDEKFEGR-----------------INSCADKIRNDAIFTRVFRV 516
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNI-AKYAAR 518
+S+G + R Y FLAF ++Q R++ A+FF S DI+ WMG F+ N+ AKYAAR
Sbjct: 517 ISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIRQWMGTFSHINVVAKYAAR 576
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
+G CFS+T A + ++ ++PDI R Y F+DG+GKI+P LA +A LKL P
Sbjct: 577 LGQCFSTTRAIKGLSAPDI-VKIPDIGRGRYCFTDGVGKISPYLAQMIASELKLRVDLAP 635
Query: 579 SAYQIRYAGYKGVVACWP-AKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQI 637
SA+Q R G KG++ P AKD+ + +R S +KF + + LEI ++F LNRQ
Sbjct: 636 SAFQFRLGGCKGILVVSPDAKDNEVH--IRKSQQKFTAAYNGLEIIRCSQFSSATLNRQT 693
Query: 638 ITLLSTLNVSDE 649
IT+LS L V DE
Sbjct: 694 ITILSALGVKDE 705
>gi|67537240|ref|XP_662394.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
gi|40741170|gb|EAA60360.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
Length = 854
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 188/414 (45%), Gaps = 109/414 (26%)
Query: 407 DVADRFLRVTFMD-EGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
++AD FLRV F D + + ++A V N+ + V R+K L++G
Sbjct: 243 NLADNFLRVRFTDAKHIGRIHATV-------------DNTMDE---VLTRIKRALANGIT 286
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSS 525
+ RY FLAF G +S CFS+
Sbjct: 287 IGSTRYEFLAF----------------GNSSS------------------------CFST 306
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPPPSAYQI 583
T A T ++ DI+ NGY+FSDG+G+I+ LA V LK+ PPSAYQ
Sbjct: 307 TRAISGC--TAHVKKIDDIEGNGYIFSDGVGRISKFLAQIVKSELKIKTPTKEPPSAYQF 364
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KG++ +P + +R S KF + LEI W++F LNRQ+I +LST
Sbjct: 365 RLVGCKGMLIVFPQARPQ-EVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQLILVLST 423
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHL 703
L ++D++F KL ML D A E ++P
Sbjct: 424 LGITDKVFHL-------KLKTMLRNLDEAME------------------------SDPKA 452
Query: 704 QGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
+L + ++ ++ +L K+G ++ ++I G ++A+NP L PG
Sbjct: 453 AHLL----------RKYVDPNQVTLTIYLPKNGEKY------EIIEGICILARNPSLHPG 496
Query: 764 DVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
+R++ AV+ P LHHL D +V P+ GDR + SGSDLDGD + V WD++L+P
Sbjct: 497 GIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDDFLVIWDQDLLP 550
>gi|388857678|emb|CCF48827.1| related to RNA-dependent RNA polymerase [Ustilago hordei]
Length = 1462
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 184/672 (27%), Positives = 286/672 (42%), Gaps = 137/672 (20%)
Query: 361 EKLKDVQECLIKNPKLNEGPKN----IDDIAEVRRLVITPTKAYWFLESKDVADR----- 411
++++ Q+ LI+ + P N A+V + ITPT+ D ++R
Sbjct: 425 QRIEVEQQRLIRQDAMEADPLNDQVVTTATAQVYHVAITPTRMLLEGPFMDASNRVLRLF 484
Query: 412 ------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
F+RV F DE + + I S SF V +R+ L G
Sbjct: 485 PEFGSHFVRVAFCDEDGDRFPVSRHDLH------GIDSESF-----VRERIGDPLKHGIA 533
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGET-----SVLDIKNWMGEFTA--KNIAKYAAR 518
+ GR++ LA+S + L H WF + + + I+ +G+F + A+ AR
Sbjct: 534 IAGRKFEALAWSGSGLGSHHCWFVTAFTDKDGNLWNAERIRQSLGDFQGVDRYPARLGAR 593
Query: 519 MGLCFSSTHATVEIPPTEV-----DHELPDIKRNG--------YVFSDGIGKITPDLAME 565
+ FS+T +T++I V DH + NG Y+ +DG+G+I+ +L +
Sbjct: 594 LSQAFSATSSTIKINDDWVKIVTDDHSNCAMPSNGPNEREKQFYLLTDGVGEISRELRDD 653
Query: 566 VA-------------QILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKK 612
+ Q+ + D PSA Q RY G KGV+ C + G M +R SM K
Sbjct: 654 IWRELCSAKNMLREWQLSQQDARRIPSAIQFRYGGAKGVL-CLNPQLRGKVMKVRHSMIK 712
Query: 613 FKSC-HTSLEICSWTRFQP--GFLNRQIITLLSTLNVSDEIFWTVQASM----------- 658
F + H LE+ + T F P LNR +I L L V ++F ++Q
Sbjct: 713 FSAPKHRDLEVAT-TSFHPLPARLNRPLINALEDLGVPADVFVSLQNKAVESAQLARKDF 771
Query: 659 --ASKLNLMLVASDVA-----FEVLTA------------SCAEQGNTAAIMLSAG-FKPQ 698
AS+L SD A F L + S + T I + G K +
Sbjct: 772 KHASQLMRSFALSDTAEVHKLFHRLDSILGITPDNLHHDSILNRLCTIVIAAALGDLKRK 831
Query: 699 TEPHLQGM----LTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVI 754
+ G + E L + + F+QV++ E + ++I G V+I
Sbjct: 832 ARIPVDGCTLIGVVDEFNYLGKNEIFVQVNDK--------------EDGQYRIIEGRVMI 877
Query: 755 AKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQK-GDRPHTNEASGSDLDGDLYYVT 810
++P + PGDVRI+ AV P H L + +VF + RP + SG+D DGD++ +
Sbjct: 878 GRSPTIHPGDVRIVTAVKPPPTHPLRQLRNVVVFNKHPHGRPLQSMLSGADFDGDIFTIY 937
Query: 811 WDENLIPPSKKSCPPMECTP--AEAKPLTCH---------VNHQNLGQICNAHVVHADRS 859
DE L P S + TP A A+P T V + +G + H+ AD+S
Sbjct: 938 EDEQLFPKQMASPGVYKNTPPRALARPCTFEDLADFFVDFVINDQIGLVSTFHLHIADQS 997
Query: 860 EYGAFDENCILLAKLAATAVDSPKTG-----KIVTMPSHLKPKKYPDFMEIEEY--QTYK 912
E + D +C+ LA+L A AVD KTG K V MP P+ PDF+ Y
Sbjct: 998 ELHSLDPDCVKLAQLHAKAVDYRKTGQAVHRKDVPMPPLNSPR--PDFLAQRPVGQGIYA 1055
Query: 913 SNKILGRLYRQI 924
S++ LG+L+R I
Sbjct: 1056 SSRALGKLFRAI 1067
>gi|259482364|tpe|CBF76776.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 869
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 188/414 (45%), Gaps = 109/414 (26%)
Query: 407 DVADRFLRVTFMD-EGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
++AD FLRV F D + + ++A V N+ + V R+K L++G
Sbjct: 258 NLADNFLRVRFTDAKHIGRIHATV-------------DNTMDE---VLTRIKRALANGIT 301
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSS 525
+ RY FLAF G +S CFS+
Sbjct: 302 IGSTRYEFLAF----------------GNSSS------------------------CFST 321
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG--SPPPSAYQI 583
T A T ++ DI+ NGY+FSDG+G+I+ LA V LK+ PPSAYQ
Sbjct: 322 TRAISGC--TAHVKKIDDIEGNGYIFSDGVGRISKFLAQIVKSELKIKTPTKEPPSAYQF 379
Query: 584 RYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
R G KG++ +P + +R S KF + LEI W++F LNRQ+I +LST
Sbjct: 380 RLVGCKGMLIVFPQARPQ-EVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQLILVLST 438
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHL 703
L ++D++F KL ML D A E ++P
Sbjct: 439 LGITDKVFHL-------KLKTMLRNLDEAME------------------------SDPKA 467
Query: 704 QGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
+L + ++ ++ +L K+G ++ ++I G ++A+NP L PG
Sbjct: 468 AHLL----------RKYVDPNQVTLTIYLPKNGEKY------EIIEGICILARNPSLHPG 511
Query: 764 DVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
+R++ AV+ P LHHL D +V P+ GDR + SGSDLDGD + V WD++L+P
Sbjct: 512 GIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDDFLVIWDQDLLP 565
>gi|395334239|gb|EJF66615.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1225
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 172/590 (29%), Positives = 279/590 (47%), Gaps = 100/590 (16%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRV+F DE N L + +++ SF + +R + +L DG + G +
Sbjct: 460 FLRVSFQDE-------NRLQFRFD---REVDGRSF-----INRRFRGVLRDGITIAGAHF 504
Query: 472 SFLAFSSNQLRDHSAWFFSK------------VGETSVLD-IKNWMGEFTAKNI---AKY 515
SFLA+S + L++H+ WF V T++++ + N+ F I A+Y
Sbjct: 505 SFLAYSQSALKEHAVWFVKPFRHRDGHGVECYVDATTIIENLGNFRVSFDTTLIHCPARY 564
Query: 516 AARMGLCFSSTHA--TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
AAR+ F++T A TV++ E +L D N Y F+DG+G I+ +LA E+ + ++
Sbjct: 565 AARIAQAFTATDASITVDVDQIERGEDLEDATGN-YCFTDGVGTISRELAREIWRSVRER 623
Query: 574 G--SPP----PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEIC-SW 625
G S P P AYQ+R+ G KG+++ G ++ +R SM KF++ +S +E+ ++
Sbjct: 624 GRRSRPDRTYPRAYQVRFQGSKGMLSV-DHTLSGRKIVIRPSMTKFEANQSSTIEVARAF 682
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA---SCAE 682
R P FLNR +I LL L VS E +Q + + + + + +L A +
Sbjct: 683 DRPGPYFLNRPLIMLLEGLGVSYETLQALQDAAVYDAQQSVTSLERSARLLEAHGLGVSF 742
Query: 683 QGNTAAIMLSA-GFKPQTEPHL--QGM---LTYELGELK----------ECQCFIQVSES 726
+ +A + L G P + Q M + + L ELK + + V++
Sbjct: 743 RLTSAMLGLHKLGLDPLNDDVFWRQAMDFAINHVLRELKHHARIPVPSLDSWTLVGVADV 802
Query: 727 SLENCFSKHGSRFA-----ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL----- 776
E + G FA +L + G +I+++P + PGDV+++ A+ RP
Sbjct: 803 HGE---LQDGEIFACIDSPTESRLIYLEGPCLISRSPTIHPGDVQVVHAIGRPPAGSALA 859
Query: 777 -HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP 835
L + +VF +G+RP + G DLDGDLY VT +L+PP ++ P PA AK
Sbjct: 860 KESLRNAVVFSIQGERPLPSCLGGGDLDGDLYNVTTRRDLLPP--RTYTPASYEPA-AKK 916
Query: 836 LTCH--------------VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDS 881
L H ++ LG I + AD+S G D++C+ LA L + AVD
Sbjct: 917 LVEHECTMEDVADFVAEYISSDTLGIIATTWLKIADQSADGILDQDCLKLAALHSHAVDY 976
Query: 882 PKTGKIVTMPS--HLKPKKYPDFMEIEEYQT-----YKSNKILGRLYRQI 924
PK+G+ V + LK K PD+ E Y S K +G+L+R I
Sbjct: 977 PKSGQPVPVNQIPKLKSKTKPDWSAPETISRGNEDYYTSMKAIGKLFRSI 1026
>gi|392564352|gb|EIW57530.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 181/729 (24%), Positives = 308/729 (42%), Gaps = 144/729 (19%)
Query: 308 IMFLVNAVMHKGILNQHQLSDSFFDL--LRCQPREVIVTALKHIYSYKRPVFDAYEKLKD 365
+ F + A++ G+LN + D D+ L + + AL+H + + ++ +
Sbjct: 331 VAFQLEALLRNGLLNTGDMLDLRTDVEELHQEDPDFAADALRHFFEK----LQSKQRSET 386
Query: 366 VQEC----LIKNPKLNEGPKNID-DIAEVR------RLVITPTKAYWFLES--------- 405
V EC L K+ ++ E D D+ E + +++TPT+ LE
Sbjct: 387 VVECFKNTLAKDREVQESLSGEDADVPESKGTLKCFHVIVTPTRI--LLEGPYDTQSNRV 444
Query: 406 ----KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
D + F+RV F DE N +++ K++ S S + +R +IL
Sbjct: 445 VRKYHDYRENFVRVEFRDE-------NRMAFRWP---KEVNSASL-----IEERFGTILK 489
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV-----GETSVLDIKNWMGEFTAKNI--AK 514
+G + GRR+ FL +S++ LR+H+ WF S G + I++ +G F+ N +K
Sbjct: 490 EGLEIAGRRFRFLGYSNSGLREHTTWFMSDFEHPDEGLLTPDRIRDSLGNFSNVNTIPSK 549
Query: 515 YAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL---- 570
YAAR+ FS T +V I + D +L D+ + + +DG G I+ L E+ +L
Sbjct: 550 YAARIAQAFSGTDPSVRIRRDQWDDQLADLGKKPFWHTDGQGTISVGLRDEIWDVLVKAQ 609
Query: 571 --KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
K + PSAYQIR+ G+KG+V +G+ M LR +M KFK+ H E +
Sbjct: 610 PDKAKLTLKPSAYQIRFLGFKGIVVV-DETLEGVYMRLRPTMNKFKA-HADDEADAEIEI 667
Query: 629 QPGF-------LNRQIITLLSTLNVSDE-----------IFWTVQASMASKLNLM----L 666
F L R +I +L L V E + T SM +NL+ L
Sbjct: 668 AKAFIYPGTARLCRPLIMVLEDLGVRKEAMLELQNLAKAVVVTASDSMGETINLLRKHAL 727
Query: 667 VASDVAFEVL-----TASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYEL---------- 711
S +L C + + ++ F Q + Q + +E+
Sbjct: 728 GDSFGLRHILEHLRRAGMCMRREAGSPDVMDNDFILQLVKYAQHHILHEIKHDARIPIPN 787
Query: 712 -----GELKECQCFIQVSESSLENCFS-KHGSRFA-----ETKKLQVINGFVVIAKNPCL 760
G E ++Q E + F G FA + + + G V I+++P +
Sbjct: 788 AHQLVGVADEGPAYMQREEYKDKEVFCLGMGEIFACVEQPDGGEPLYVKGQVTISRSPHI 847
Query: 761 RPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
PGDV+ + A+ +P LC + +V P G+R + +G D+DGD + V D
Sbjct: 848 HPGDVQRVRAIGKPPDDKLCLFRNLRNVVVLPSVGERSLASCLAGGDVDGDEFLVIKDPT 907
Query: 815 LIPPSKKSCPPMECTPAE--AKPLTC---------HVNHQNLGQICNAHVVHADRSEYGA 863
L+P + + +P T ++ +G + + H+ AD
Sbjct: 908 LLPTTNADPASYDAGDPRDIGRPSTIDDICNFLLEYMQSDVMGLVADQHLKIAD------ 961
Query: 864 FDENCILLAKLAATAVDSPKTGKIVTMPSHLKP--KKYPDFMEIEEYQT-----YKSNKI 916
C++LA+L + AVD PK G V + S +P + PD+ + E+ Y+S +
Sbjct: 962 ----CMVLARLCSQAVDYPKNGVPVNLESMPEPLIRAKPDWKKSEDNDPRPSDYYESTRA 1017
Query: 917 LGRLYRQIK 925
LG L+R +
Sbjct: 1018 LGALFRNFE 1026
>gi|302682738|ref|XP_003031050.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
gi|300104742|gb|EFI96147.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
Length = 1178
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 179/666 (26%), Positives = 293/666 (43%), Gaps = 130/666 (19%)
Query: 357 FDAYEKLKDVQECLIKNPKLNEGPKNIDDIA-------EVRRLVITPTKAYW-------- 401
++A + L V EC + K E + DDI + L++TPT+ +
Sbjct: 349 YEADDDLMSVDECFARAAKDFEEKQLNDDIYPADASIFQSLHLIVTPTRMIFQGPFPERS 408
Query: 402 --FLESKDVA--DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVK 457
+ S D D FLRV+F DE + L Y +D+ +S V R++
Sbjct: 409 NRIIRSYDAKHHDSFLRVSFTDE-------DKLHYRFD---RDVDGSSM-----VRSRIE 453
Query: 458 SILSDGFNLCGRRYSFLAFSSNQLRDHSAW----FFSKVGETSVLDIKNWMGEFTAKN-- 511
L +G L G ++ FLA+S + L++H+ + F+ + E + I +G F
Sbjct: 454 RFLKNGICLAGHKFDFLAYSQSALKEHTVYFVKPFWVGIREVNAATIIAGIGNFEGSEDR 513
Query: 512 --IAKYAARMGLCFSSTHATVEIPPTEV----DHELPDIKRNGYVFSDGIGKITPDLAME 565
A+YAAR+ F++T A+V + EV D PD Y F+DG+G ++ +A E
Sbjct: 514 FCPARYAARLSQAFTATDASVIVEAEEVFPVNDISTPD---GAYHFTDGVGTMSKGMASE 570
Query: 566 V-AQILKLDGSPP-----PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS 619
A++ + P+A+QIR+ G KG+++ A G + LR SM KF+S +
Sbjct: 571 TWAELQRWRKRTKKTKNVPAAFQIRFMGSKGMLSVDHAL-HGREVCLRHSMIKFESSSDT 629
Query: 620 LEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFW-----TVQASMASKLNLMLVAS---- 669
LEI ++ R +LNR +I ++ L V E F VQ +S +L A
Sbjct: 630 LEIARAFDRPGRYYLNRPLIMVMEGLGVPYESFLRHQEAAVQNVHSSSESLAKCAKMFES 689
Query: 670 ---DVAFEV------LTASCAEQGNTAAIMLSAGFKPQTEPHLQGML---------TYEL 711
AF V L C + A + + T L+ + Y L
Sbjct: 690 FGLGTAFRVPSLLLNLEKLCNVKNLDANVFYRQMIEFATHHVLRELKNRARIPIPGAYTL 749
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
+ + ++ E + C H ++ ++ + G V+I+++P + PGDV+++ A+
Sbjct: 750 VGVADVHRYLGPGEIFV--CIRPH-----DSNEVTYLEGDVLISRSPTIHPGDVQVVRAI 802
Query: 772 DRPELHH------LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP----PSKK 821
RP+ L + +VF +G RP G DLDGD Y NLIP P +
Sbjct: 803 GRPKAGSPFAKEPLANTVVFSVRGTRPLPTMLGGGDLDGDEY------NLIPLNSHPEFR 856
Query: 822 SCPPMEC---TPAEAKPLTC-------------HVNHQNLGQICNAHVVHADRSEYGAFD 865
+E PA K LT +N+ LG + ++ AD+S FD
Sbjct: 857 PARTVEAASYAPAPRKTLTRAADMRDVADFVIDFINYDVLGIVAIHWLIIADQSNKSIFD 916
Query: 866 ENCILLAKLAATAVDSPKTGKIVTM---PS-HLKPK---KYPDFMEIEEYQTYKSNKILG 918
E+C+ L++L + AVD K+G+ V + P+ H + K P+ ++ + YKS + +G
Sbjct: 917 EDCLTLSQLHSDAVDFQKSGQPVALDRIPALHFRAKPDWNAPETVKANSARYYKSQRAIG 976
Query: 919 RLYRQI 924
RL R I
Sbjct: 977 RLARAI 982
>gi|268561564|ref|XP_002646475.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]
Length = 1606
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/471 (29%), Positives = 218/471 (46%), Gaps = 84/471 (17%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G+L+ Q F+Q ++++ + + + K ++ G V++ KNPC+ GDVR+ E
Sbjct: 864 ETGQLQYGQIFVQYTQNAAKKLPMRGPNMTVPDAK--IVTGTVLVTKNPCIVTGDVRVFE 921
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI----------PPS 819
AVD PELHH+CD +VFPQ G RPH +E +GSDLDGD Y + WD+ L+
Sbjct: 922 AVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDFSVE 981
Query: 820 KKSCPPMECTPAEAKPLTCHVNHQNL---GQICNAHVVHADRSEYGAFDENCILLAKLAA 876
KK P + + +V + L G I N H+ ++D +YG C+ LAK +
Sbjct: 982 KKDPVPFDFDQIDDLMRDFYVKYLKLDSVGTISNNHLHNSD--QYGLTSTVCMNLAKKNS 1039
Query: 877 TAVDSPKT-----------GKIVTMPSHLKP---KKYPDF-MEIEEYQTYKSNKILGRLY 921
AVD K+ GK ++ P ++ PD+ M E Y S ++ GRL+
Sbjct: 1040 QAVDFTKSGDPPAPLTREWGKDPETGENIPPEGAERIPDYHMANERVPVYVSPRLCGRLF 1099
Query: 922 RQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQY 981
R+ + A D I +S E D ++ D L + G + AR +Y+GQL ++ Y
Sbjct: 1100 REFQ-AIDNVIKISEERD-EQFEVQIDETLMIQGYEAYMEGARKDLANYNGQLRAIMETY 1157
Query: 982 NVNRK---------EFRHIWS-------MPKYNSRKQGELQERLKHSYSAFRKEFRQVFE 1025
+ + + R+ S M YN+ + ++ R + FR+ F + F
Sbjct: 1158 GIRTEGEIMSDCILDMRNRISDRDQDDKMSFYNTNQM--IETRTTALFCRFRENFFKEFH 1215
Query: 1026 KMN---SDFELSDNEKNVL----------YEQKASAWYQVTYHREWVKKSLDLLEQGSAR 1072
++ + S++ N L QKA AWY+ Y E+ + S+R
Sbjct: 1216 GFQAACTEIQNSNDSTNPLNFRCDGPSVPMLQKAVAWYRACY--EFAQ---------SSR 1264
Query: 1073 SVVLLSFAWIANDYLARIK---IKCQEMANIGKSKPV-----NNLARYVAD 1115
LSFAWI D LA++K + E +G P+ + A+Y+AD
Sbjct: 1265 ETRKLSFAWIVFDVLAKVKEHNMLHGENVEMGGGNPMYIFLEAHRAQYIAD 1315
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 63/252 (25%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + +R LR +TF D+ M AN +
Sbjct: 466 VRKVIFTPTRVIYISPETIMGNRVLRKFDKDGTRVIRITFRDDNNNQMRANDTGDLL--- 522
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS- 496
++T+N F L +G + R + FL S++Q+RD+ A+F +K ++
Sbjct: 523 --EMTANKF-------------LGEGIRIANREFGFLGCSNSQMRDNGAYFMAKYSQSQL 567
Query: 497 -------------------VLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHAT------- 529
+++++ +G+F +NI K ARMG CF+ + T
Sbjct: 568 EKFLRTRPNEAQLKAFKPRIMEVRKHLGKFDKLENIPKLMARMGQCFTQSRLTGVELNRS 627
Query: 530 --VEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAG 587
+ IP E L Y FSDG+G ++ A +VA +++ G+ PS++QIR+ G
Sbjct: 628 DYIRIPDFEGGKNLAG---KPYTFSDGVGIMSYRFAQKVAHAMQM-GNSVPSSFQIRFRG 683
Query: 588 YKGVVACWPAKD 599
KG++A P D
Sbjct: 684 MKGMIAIDPYMD 695
>gi|389746474|gb|EIM87654.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 976
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 174/638 (27%), Positives = 269/638 (42%), Gaps = 115/638 (18%)
Query: 356 VFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRV 415
VFDAY + L K+ EGP P ++ L D F+RV
Sbjct: 177 VFDAYTLI------LTPTSKILEGP--------------LPDQSNSVLRRFGHHDCFIRV 216
Query: 416 TFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLA 475
+F DE P+ +D + S + + R KS + G L GR + FL
Sbjct: 217 SFQDENH------------TPLRRDPSGTSIQEL--LRTRYKSAMVKGIPLAGRHFEFLG 262
Query: 476 FSSNQLRDHSAWFF----SKVGETSVLD-IKNWMGEFT--AKNIAKYAARMGLCFSSTHA 528
+S + LR+HS F S G D I++ +G F+ + A AAR FS++
Sbjct: 263 YSMSGLREHSIIFMQAFESDDGSLMTADRIRSLLGNFSHISNKPALLAARWAQAFSASDP 322
Query: 529 TVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP------PSAYQ 582
+V + E+ +G +F+DG G I+ LA +V + L+ PS +Q
Sbjct: 323 SVTLQSAEIQRIGDKRSPSGSLFTDGCGTISESLARDVWKFLQRHRRRAASMRLVPSCFQ 382
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK--SCHTSLEICSWTRFQP--GFLNRQII 638
IR G KG++ P G + LR S KF+ S +L+I S T +P FLNR +I
Sbjct: 383 IRIGGAKGILFQDP-NLIGKMVCLRPSQTKFENDSEALTLDIAS-TSSRPIRMFLNRSLI 440
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQ 698
LL L V ++F +Q + + +F + G ++ +++ F
Sbjct: 441 LLLEFLGVKPDVFMALQKDATDAVE----RARHSFLEAAKLFSHHGFGSSFRIASLFN-- 494
Query: 699 TEPHLQGMLTYELGELK--ECQCFIQVSESSLENCFSK---------HGS---------- 737
+L L + G+L+ ECQ + E + + + HGS
Sbjct: 495 ---NLVTQLKLDEGDLQGLECQILTKSIEYAATHVLREIKFRARIPVHGSWTLLGVSDEW 551
Query: 738 ------------RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
R + I G ++I ++P + PGDV+++ AV RPEL HL + +VF
Sbjct: 552 GCLREGEIFATVRDEHSGTSVEIQGPMLITRSPQIHPGDVQMVTAVRRPELAHLTNVVVF 611
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC------- 838
+G+R + G DLDGD+Y + D +L P P + C
Sbjct: 612 SCEGERSLPSMLGGGDLDGDIYNLILDPDLFPTHTCEAGGYVGLPHKVLDRDCTIDDVAD 671
Query: 839 ----HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVT---MP 891
++ +G I H+ AD S G ++C+LLA+ A+ AVD PKTG +P
Sbjct: 672 FVINYIEADLVGYIAILHLRIADLSPEGPNSKDCLLLAEKASHAVDFPKTGTPTNFDDLP 731
Query: 892 SHLKPKKYPDFMEIEEYQT-----YKSNKILGRLYRQI 924
+ K PDF+ E Y SNK+LGRL+R +
Sbjct: 732 RAPRGPK-PDFLGSETVDPSSSSFYPSNKVLGRLFRNV 768
>gi|336388940|gb|EGO30084.1| RNA-directed RNA polymerase [Serpula lacrymans var. lacrymans S7.9]
Length = 1246
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 217/487 (44%), Gaps = 74/487 (15%)
Query: 459 ILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNW-MGEF-TAKNIAKYA 516
++ G L G +Y F S++QLR + FF + LD + + +G+F NIAK A
Sbjct: 71 LMKAGLFLNGLQYRFYHHSNSQLRSRTC-FFREANSDEELDARIYKLGDFGRIMNIAKRA 129
Query: 517 ARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLD 573
R+GL FS+ +++ P V ++ DI VFSDG G + A++V++ I+ +
Sbjct: 130 KRIGLLFSAAEVDLQLDPKWVT-DIDDITVGDIVFSDGCGLMAKRFAVQVSKAKSIIFRN 188
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIR--MSLRGSMKKFKSCH-TSLEICSWTR-FQ 629
P+ +QIRY GYKGV+ P D+ + + R SMKKF + S + +++ +
Sbjct: 189 QRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVGYSQPYS 248
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL--TASCAEQGNTA 687
G LN I+ LLS+L +SDE F QA + + AS A + + +S +
Sbjct: 249 FGRLNNDIVVLLSSLGISDEKF---QAKQRAYFEWIEGASHDAVKAIDFLSSLGKYSLAE 305
Query: 688 AIMLSAGFKPQTEPHLQGMLTYEL----------------------------GELKECQC 719
++L P ++ + E+ G LKE Q
Sbjct: 306 RLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGVLKEGQV 365
Query: 720 FIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
I+++ SR T ING +++ +NPCL PGD L AVD P L HL
Sbjct: 366 QIRIT-----------SSRGGATTP---INGDILVVRNPCLHPGDCLKLRAVDHPSLSHL 411
Query: 780 CDCLVFP---QKGDRPHTNEASGSDLDGDLYYVTWDENLIP---------PSKKSCPPME 827
DC+VF + G +P +SG DLDGD ++V WD +L+P P K +
Sbjct: 412 LDCIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPNKERVGKD 471
Query: 828 CTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
T + N+ +L ++ H S GA C L L + +VD G
Sbjct: 472 VTRMDLATYFASYNNMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSVD----GGR 527
Query: 888 VTMPSHL 894
+ +P L
Sbjct: 528 IKIPDRL 534
>gi|225680005|gb|EEH18289.1| RNA-directed RNA polymerase Rdp1 [Paracoccidioides brasiliensis Pb03]
Length = 1258
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 175/370 (47%), Gaps = 40/370 (10%)
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
+VI G ++A+NP L PGD+R+++AVD P LHHL D +V PQ GDR + SG DLDGD
Sbjct: 677 EVIEGLCILARNPSLHPGDIRVVKAVDIPGLHHLKDVVVLPQTGDRDIASMCSGGDLDGD 736
Query: 806 LYYVTWDENLIP------PSKKSCPPMECTPAEA------KPLTCHVNHQNLGQICNAHV 853
Y V WD++L+P P S P + + K ++ + L QI AH+
Sbjct: 737 DYVVIWDQDLLPKDWFEEPMDYSAPKSKVLDRDVTVDDIIKFFVSYMQNDRLPQIALAHL 796
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME---IEEYQT 910
AD S+ G DE C+ LA L + AVD K+G V M L+PKK+P FME ++
Sbjct: 797 AIADYSDDGVQDEKCLRLATLHSAAVDYNKSGIPVRMNQDLRPKKWPHFMERKFAKKDSQ 856
Query: 911 YKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH-YDTDLEVPGSVDFTADARNQKCS 969
Y S KILG+LY G Y N+ S P D + + E+ + A+ K
Sbjct: 857 YTSRKILGQLYDIAGGVY-LNLQSHSAKGRLPFDQRILNANFEI--DEKLLSFAKELKGE 913
Query: 970 YDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFRQV-FE 1025
YD L ++ Q+ + +E +WS + N K + E + SA R++FR + E
Sbjct: 914 YDADLRRIMAQHEIQSEE--EVWSTFVLSHANMSKDYKFHEEIGRISSALRQKFRMLCHE 971
Query: 1026 KMNS-DFE----LSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFA 1080
K DF+ L+ V EQ A + T H G + L+SF
Sbjct: 972 KAGGKDFKSLAPLAIAMYRVTSEQMEKA--KATAHSHCTP--------GEEEMMPLISFP 1021
Query: 1081 WIANDYLARI 1090
W+ L I
Sbjct: 1022 WVLQPILGMI 1031
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 145/308 (47%), Gaps = 44/308 (14%)
Query: 304 VSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYS------------ 351
+ F + + + + LN++ + F D L + + L ++YS
Sbjct: 308 LEFAVRYYLEVCISYRYLNEYAIKKKFVDELARIGEKKAIYLLGYVYSNKIAYLIPWIYS 367
Query: 352 -YKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVAD 410
++ P+F + + Q + + P +ID V F ++ AD
Sbjct: 368 TFESPIFLIEQIIPGHQSAEVTPSTIYYKPPSIDTGNRV------------FRRYREYAD 415
Query: 411 RFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
RFLRV F DE + M + Y A IV V+ RV + +G + R
Sbjct: 416 RFLRVRFTDE--KNM-GKIFPYSNANIV---------CMNEVYTRVTLTMKNGITIGDRC 463
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHAT 529
Y FLAFS+ QLR+H+A+FF+ + + +I+ +G+F +N+AK+AAR+G CFSST A
Sbjct: 464 YEFLAFSNAQLREHAAYFFASLPHLTAANIRAQLGKFNPIRNVAKHAARVGQCFSSTRAL 523
Query: 530 VEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLDGSPPPSAYQIRYA 586
P V E+ DI+RNGY FSDG+G I+ LA + I L G PPS +Q R
Sbjct: 524 TGCPVQIV--EIDDIERNGYTFSDGVGLISKFLAQMIQSEFAIETLSGE-PPSVFQFRLG 580
Query: 587 GYKGVVAC 594
G KG++
Sbjct: 581 GCKGILTV 588
>gi|336364173|gb|EGN92535.1| hypothetical protein SERLA73DRAFT_99065 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1660
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 217/487 (44%), Gaps = 74/487 (15%)
Query: 459 ILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNW-MGEF-TAKNIAKYA 516
++ G L G +Y F S++QLR + FF + LD + + +G+F NIAK A
Sbjct: 96 LMKAGLFLNGLQYRFYHHSNSQLRSRTC-FFREANSDEELDARIYKLGDFGRIMNIAKRA 154
Query: 517 ARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLD 573
R+GL FS+ +++ P V ++ DI VFSDG G + A++V++ I+ +
Sbjct: 155 KRIGLLFSAAEVDLQLDPKWVT-DIDDITVGDIVFSDGCGLMAKRFAVQVSKAKSIIFRN 213
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIR--MSLRGSMKKFKSCH-TSLEICSWTR-FQ 629
P+ +QIRY GYKGV+ P D+ + + R SMKKF + S + +++ +
Sbjct: 214 QRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVGYSQPYS 273
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL--TASCAEQGNTA 687
G LN I+ LLS+L +SDE F QA + + AS A + + +S +
Sbjct: 274 FGRLNNDIVVLLSSLGISDEKF---QAKQRAYFEWIEGASHDAVKAIDFLSSLGKYSLAE 330
Query: 688 AIMLSAGFKPQTEPHLQGMLTYEL----------------------------GELKECQC 719
++L P ++ + E+ G LKE Q
Sbjct: 331 RLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGVLKEGQV 390
Query: 720 FIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
I+++ SR T ING +++ +NPCL PGD L AVD P L HL
Sbjct: 391 QIRIT-----------SSRGGATTP---INGDILVVRNPCLHPGDCLKLRAVDHPSLSHL 436
Query: 780 CDCLVFP---QKGDRPHTNEASGSDLDGDLYYVTWDENLIP---------PSKKSCPPME 827
DC+VF + G +P +SG DLDGD ++V WD +L+P P K +
Sbjct: 437 LDCIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPNKERVGKD 496
Query: 828 CTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
T + N+ +L ++ H S GA C L L + +VD G
Sbjct: 497 VTRMDLATYFASYNNMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSVD----GGR 552
Query: 888 VTMPSHL 894
+ +P L
Sbjct: 553 IKIPDRL 559
>gi|392595557|gb|EIW84880.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1235
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 194/747 (25%), Positives = 320/747 (42%), Gaps = 158/747 (21%)
Query: 300 YKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVFDA 359
+ + V + I F V A++H G+LN ++ E I+ + + S + + A
Sbjct: 315 WMKSVHWSIAFQVAALLHNGVLNTQEV-------------ESILPVVDKMASQSQEI--A 359
Query: 360 YEKLKDVQECLIKNPKLNEGPKNI-------DDIAEVRRL------------VITPTKAY 400
E ++ E + P ++ PK I EVRR+ ITPT+
Sbjct: 360 SEVMRSFIEKISTRPP-SQTPKQFLEVVRKSRSIDEVRRISSASGRFFCYHVTITPTRML 418
Query: 401 ----WFLESKDV-------ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQK 449
+ +S V D FLRV F DE + +++ SF +
Sbjct: 419 LEGPYITQSNRVIRKYEGFEDHFLRVEFRDEDRLQFRWD----------REVDGQSFLED 468
Query: 450 TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-- 507
RV +L +G ++ GR ++FLA+SS+ LR HS WF ++ S +I++ +G F
Sbjct: 469 -----RVGGMLKNGIDIAGRHFTFLAYSSSALRSHSVWFVNEEDFMSATNIRDSLGVFAE 523
Query: 508 TAKNIAKYAARMGL-----------------CFSSTHATVEIPPTEVDHELPDIKR-NGY 549
T +KYAAR+G+ FS+T +V+I + E+ DIK G
Sbjct: 524 TIYQPSKYAARIGVSNGFLRFDLHMFNLPQQAFSATDPSVKISKDQW-KEIRDIKNAQGQ 582
Query: 550 VFSDGIGKITPDLAMEVAQIL------KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR 603
+F+DG+G I+ +L V + L + S PSAYQIR+ G+KGVVA + +GI
Sbjct: 583 LFTDGVGTISRELGRMVWEKLCEARRDRGANSVIPSAYQIRFLGFKGVVAI-DEQLEGIM 641
Query: 604 MSLRGSMKKF--KSCHTSLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
+ R SM+KF ++ H +EI ++ + LNR ++ +L V F + +
Sbjct: 642 LCPRTSMRKFADQTEHAEIEIVRAFDKPNQPNLNRPLVMVLEDSGVDKGAFMELLDDAVA 701
Query: 661 KLNLMLVASDVAFEVLTAS-CAEQGNTAAIML---SAGFKPQTEPHLQGMLTYELGELKE 716
+ + + VL ++ A I+L + G ++ + + + T L ++
Sbjct: 702 GARMAHDSVEKFVNVLRSNRLGFSYRLAHILLKLDALGLDLKSNSNQESLDTAFLARVRG 761
Query: 717 C------------------QCFIQVSESSLENCFSKHG----------------SRFAET 742
C Q + V + + K G F E
Sbjct: 762 CVINHVLRDIKHFARIPIPQSYQLVGVADEGPAYVKDGHENVYTLPPGKIFACIQNFGEE 821
Query: 743 KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNE 796
K + G VI+++P + PGDV+ + AV +P + LC + +V P +G RP N
Sbjct: 822 PKW--LEGPCVISRSPVVHPGDVQRVYAVGKPPANQLCLFEHLRNVVVLPSQGPRPLANC 879
Query: 797 ASGSDLDGDLYYVTWDENLI------PPSKKSCPPMECTPAEAKPLTC-----HVNHQNL 845
G DLDGDLY + + L+ P + P C +++ +
Sbjct: 880 LGGGDLDGDLYEIIMFQRLLITEHSDPAQYEDRKPRTLDRPSTIDDVCDFVVEYIHSDVV 939
Query: 846 GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK---IVTMPSHLKPKKYPDF 902
G I + H++ AD+S+ G D+ C+ LA L + AVD PK G I +P +L P K PD+
Sbjct: 940 GLISDKHIIIADQSKDGTRDDLCLKLADLHSQAVDYPKNGNPVDIRRLPRNLIPYK-PDW 998
Query: 903 MEIE-----EYQTYKSNKILGRLYRQI 924
E Y+S++ LG +YR +
Sbjct: 999 HAAEVSSPRSLDYYESDRALGHMYRSV 1025
>gi|403377070|gb|EJY88529.1| Suppressor of ascus dominance [Oxytricha trifallax]
Length = 1160
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 171/682 (25%), Positives = 288/682 (42%), Gaps = 133/682 (19%)
Query: 357 FDAYEKLKD-VQECLIKN-PKLNEG------PKNIDDIAEVRRLVITPTKAYWFLESKDV 408
F+ ++K+ D VQ+ ++KN + ++ P+N D E L ITPT + L S+ +
Sbjct: 279 FEDFKKIGDKVQQTILKNWDRFHQDILKMKLPENDDGKIEAYSLTITPTFNIYNLNSQQL 338
Query: 409 A-----------DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVK 457
+ D+FL+V F + L+ + S Y K I K + V
Sbjct: 339 SNVILRQNQNYHDKFLKVDFKGDDLEDAGQILQSKYGFKQGKPI-----KHKNSLSNYVW 393
Query: 458 SILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV--------------GETSVLDIKNW 503
+S+G N+ Y FL S++ L+ H+ W + G + I+
Sbjct: 394 KPISEGINILHMNYQFLGNSNSSLKQHTIWMLNTSQFEDKCDNVVRLYNGMELLQQIQES 453
Query: 504 MGEF----------TAKNIAKYA-ARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFS 552
G K I + AR FS T E+ ++++ +PDI +NG FS
Sbjct: 454 FGHLPKVVKSENKELNKGITLHTLARAAQLFSGTRHICELRADQIEY-IPDIIKNGKNFS 512
Query: 553 DGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKK 612
DG G I+ +LA ++ I L SAYQ R G KG + + G ++ +R SMKK
Sbjct: 513 DGNGCISQELANKINAIYNLQDC---SAYQFRLGGCKGTLVV-NQELQGEKIQIRKSMKK 568
Query: 613 FKSCHTSLEICSWTRFQPGFLNRQIITLL------------------------------S 642
F++ TSL I GF NRQ+I+L+ +
Sbjct: 569 FENSDTSLNIARCATPSQGFFNRQLISLIENQGIIFEDIEQILESSDQLKFINQINSFEN 628
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEP- 701
T+ D IF QA ++ NLML + F + +Q + Q++P
Sbjct: 629 TIKDEDLIFSQQQAKIS---NLMLTNTQKEFINYISESGQQ--MFKTFVEKRMDVQSDPF 683
Query: 702 --HLQGMLTYELGELKECQCFIQVSESSLENCFSKH------GSRF---------AETKK 744
+L +L++++ + + I + +S++ + + G F E+K
Sbjct: 684 IKNLSKLLSHQITSQIKNKGRIPIKDSAILIGVADYLQVLQPGEIFLQVQDPDINEESKD 743
Query: 745 L-QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
+ +VI G V+I ++PCL P DV ++AV+ + HL + +VF GD P ++ +G DLD
Sbjct: 744 IYEVITGDVIITRSPCLHPNDVMKVKAVNCNQYKHLNNVVVFSANGDEPIQSQLAGGDLD 803
Query: 804 GDLYYVTWDENLIPP------------SKKSC---PPMECTPAEAKPLTCHVNHQN-LGQ 847
GD++++ W+E L+ SK+ P E H N LG+
Sbjct: 804 GDVFHIIWNERLVSQFTPQFLEKQKFDSKRIVGYQAKYTLIPQEIADSLLHFFKNNILGK 863
Query: 848 ICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH-------LKPKKYP 900
I + H+ D+ + ++ + L AVD K G + + L + +P
Sbjct: 864 IDSLHLAICDKQSPNS--QHALSTEFLHQQAVDFQKHGCKPDIEEYHEIRNEGLDNQMFP 921
Query: 901 DFMEIEEYQTYKSNKILGRLYR 922
D+M+ + +Y S KI+G +YR
Sbjct: 922 DYMQSKSQDSYASQKIMGTIYR 943
>gi|409045817|gb|EKM55297.1| hypothetical protein PHACADRAFT_173398 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1215
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 187/728 (25%), Positives = 313/728 (42%), Gaps = 145/728 (19%)
Query: 308 IMFLVNAVMHKGILNQHQLSDSFFDLLR--CQPREVIVTALKHIYSYKRPVFDAYEKLKD 365
I F + A++ G LN L + F+ ++ C R ++ D E +D
Sbjct: 328 IAFQLEALLRNGFLNTEDLLERFYGPVKQLCVRRPKAAAETLRAFTEAMRGRDPRESPED 387
Query: 366 VQECLIKNPKLNEGPKNIDDIAE---VRRLVITPTKAY----WFLESKDV-------ADR 411
+ E + E P+ ++ + + ITPT+ + ++S V D
Sbjct: 388 IFEKVWSR----EEPEAVELSSGNFMCHHVTITPTRMLLEGPYVIQSNRVIRQYRGYEDH 443
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
F+R+ F DE + L Y +D S + RV +L GF+L R++
Sbjct: 444 FIRIDFRDE-------DRLQYRWD---RDTDGKSLLEN-----RVGGLLKGGFSLATRKF 488
Query: 472 SFLAFSSNQLRDHSAWFFSKV--GETSVLD---IKNWMGEFTA--KNIAKYAARMGLCFS 524
FLA+SS+ LR+H+ WF + E +D I++ +G+F+A +KYAAR+ F+
Sbjct: 489 EFLAYSSSALREHAVWFVNPFYHQEKGWIDAEYIRSSLGDFSAVINCPSKYAARIAQAFT 548
Query: 525 STHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL------KLDGSPPP 578
+T +VEI + + ++ D+ Y+F+DG+G I+ +L + + L + P
Sbjct: 549 ATDPSVEITRDQWE-QMDDLGEEPYLFTDGVGTISSELGDMIWEALCSARDDSYRKNIKP 607
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH---TSLEIC-SWTRFQPGFLN 634
SAYQIR+ GYKG+VA + G++M LR SM KF+ ++EI ++ R +LN
Sbjct: 608 SAYQIRFLGYKGMVAV-DGRLKGVKMRLRPSMNKFEGPAEETATIEIARAFERPNTCYLN 666
Query: 635 RQIITLLSTLNVSDEIFWTVQAS------------------------------------- 657
R +I +L V + F +Q +
Sbjct: 667 RPLIMVLEDRGVIKQAFLELQEAAVAAIHMSSDSVMQCRQLFREHSLGGSYRLSYVWQLL 726
Query: 658 ------MASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYEL 711
M + N+ +V D FE L A+ +I +A P L L +
Sbjct: 727 NAVGLGMEHEENIRVVLQDPFFERLV-QFAKNDVLRSIKHNARI-----PVLGSYLLVGV 780
Query: 712 G------ELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDV 765
E + C+ ++ E + C K + ++L I G V I+++P + PGDV
Sbjct: 781 ADEGPAYEAEGCENVFKLEEGQIYACVQK-----SVDEELIWIEGSVTISRSPVVHPGDV 835
Query: 766 RILEAVDRPE-------LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
+ + A+ +P +L + +V P G R + G DLDGDLY + W+ L+P
Sbjct: 836 QRVTAIGKPPDDGRPCFFRNLKNVVVLPSTGGRSLASMLGGGDLDGDLYSIIWESTLLPT 895
Query: 819 SKKSCPPMECTPAEAKPL--------TC-----HVNHQNLGQICNAHVVHADRSEYGAFD 865
+ P + P + L C +++ LG + + H++ A G D
Sbjct: 896 EHQG--PAKYEPVGKRELDRPSRIEDICDFIIEYIDSDVLGLLSDRHLIIAGELREGTRD 953
Query: 866 ENCILLAKLAATAVDSPKTG---KIVTMPSHLKPKKYPDFMEIEE-----YQTYKSNKIL 917
CI LA+L + AVD PK G I P L P K PD+ + E+ Y+S++ L
Sbjct: 954 AKCIRLAELCSQAVDYPKNGVPVDIQNSPRWLIPYK-PDWKKAEDNAPRKTDYYESDRAL 1012
Query: 918 GRLYRQIK 925
G L+R ++
Sbjct: 1013 GDLFRNVQ 1020
>gi|115436872|ref|XP_001217666.1| predicted protein [Aspergillus terreus NIH2624]
gi|114188481|gb|EAU30181.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1039
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 163/584 (27%), Positives = 257/584 (44%), Gaps = 121/584 (20%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV--GETSVL---DIKNWMGE 506
+F+R +++L+ G + GR Y+FL FS + LR HS WF S G+ S+ I +G
Sbjct: 446 IFQRFRTVLTLGIQIAGRTYTFLGFSHSSLRSHSVWFSSPFIDGDGSLQTSSSIIKALGN 505
Query: 507 FTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN--GYVFSDGIGKITPDLA 563
F+ + A+ AAR+G F+ T T+ + V++ + DI + VFSDGIG I+ ++
Sbjct: 506 FSGITSPARCAARIGQAFTETPFTLPVQNVVVEY-IEDITSSDESRVFSDGIGTISLEVV 564
Query: 564 MEVAQ-ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLE 621
+ + I + G+ P+ +Q+R G KG+++ ++ +G + +R SM KF + L
Sbjct: 565 ERIWKGIPQKKGT--PTCFQVRLGGAKGMLSL-DSRLEGSVIRIRPSMVKFSTDDMRDLG 621
Query: 622 ICSW-TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC 680
IC + P LNRQI+ +L + V D+ F+ +Q +L L+ ++D TA+
Sbjct: 622 ICGMASEPYPLVLNRQIVKILEDIGVPDDWFFGLQNDRLRQLQLISSSADK-----TATF 676
Query: 681 AEQGNTA-AIMLSAGFK--------PQTEPHL------------------------QGML 707
+ A +I L F+ + +P L QGM
Sbjct: 677 LKDAKIADSIGLYKLFRWCYWMDLDYREDPFLRSIVEAMILRELRLLKHKSRIPVPQGMT 736
Query: 708 TY----ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
Y E G LKE + FI F +A G V++ ++P L G
Sbjct: 737 LYGIIDETGYLKENEVFI---------TFDTISGLYAAPPG----PGPVLVTRSPALYDG 783
Query: 764 DVRILEAVDRPELHHLC---DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
D+++ V P H L +C++F Q+G R ++ SG DLDGDLY+V WD I
Sbjct: 784 DIQVARNVVPPPDHPLARHKNCIIFSQQGARDLPSQLSGGDLDGDLYHVIWDP--IVAKV 841
Query: 821 KSCPPMECTPAEAKPLTCHVNHQNL-------------GQICNAHVVHADRSEYGAFDEN 867
+ PP + V +++ G I H++ AD+ G
Sbjct: 842 HTSPPANYARVVPHDIGRVVTTKDMAYFFVEFMKTDCVGIIATRHMILADQEPEGTHASG 901
Query: 868 CILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM-----------------EIEEYQ 909
C LLA+L +TAVD K+G V M ++ PDFM E+ +
Sbjct: 902 CKLLAELHSTAVDYSKSGVPVDMAKIPSTGRFRPDFMAPGPLAQVYSKSKITLTELSSHA 961
Query: 910 T-----------YKSNKILGRLYRQIKGAYDENISVSSEVDINP 942
YKS++ILG+LYR I DE +D P
Sbjct: 962 AYDEDGPSHILYYKSDRILGKLYRAI----DEKRIWHERIDTGP 1001
>gi|238508311|ref|XP_002385352.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
gi|220688871|gb|EED45223.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
Length = 1107
Score = 159 bits (403), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 173/619 (27%), Positives = 271/619 (43%), Gaps = 123/619 (19%)
Query: 364 KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR-----------F 412
+++Q+ L+E N ++ +V R+ +TPT+ + +R F
Sbjct: 375 REIQDGFAYREGLHE---NTVNMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYF 431
Query: 413 LRVTFMDEGLQTM--NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
+RV F DE + + NANV Y KDI F R I++ G + GR
Sbjct: 432 IRVQFCDENGEGLLFNANV-DY------KDI-----------FGRFIDIMTRGIQIAGRT 473
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGE-----TSVLDIKNWMGEFT-AKNIAKYAARMGLCFS 524
Y+FL FS + LR + WF S + + I + +G+F+ + A+ AAR+G F+
Sbjct: 474 YNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHITSPARCAARIGQAFT 533
Query: 525 STHATVEIPPTEV------DHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
T V + V D PD R VFSDG+G I+ ++ + + L P
Sbjct: 534 ETPFMVPLEKHGVLVSTIPDLTSPDGSR---VFSDGVGAISREVVASIWADIPLKRG-NP 589
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIR---MSLRGSMKKFKSCHT-SLEICSW-TRFQPGFL 633
+ +QIR KG++A D +R + +R SM KF S +LEIC+ +R P L
Sbjct: 590 TCFQIRLGRAKGMLAA----DSRLRTAVIQIRPSMIKFDSEDMKNLEICNMASRPYPMVL 645
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL----TASC--------- 680
NRQ+I +L + S + F+ +Q ++L + V++D L A C
Sbjct: 646 NRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAECIGLYRLYRQ 705
Query: 681 --------AEQGNTAAIMLSAGFK-------PQTEPHLQGMLTY----ELGELKECQCFI 721
+ G AI+ + + P +GM Y E G L+E + ++
Sbjct: 706 CYWTRLNYKKDGFLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDETGFLQEGEVYV 765
Query: 722 QVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL-- 779
F + R+A G +++ ++P L GD++ + V PE H L
Sbjct: 766 ---------TFDRMEGRYAAPPG----PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRY 812
Query: 780 -CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
+C+VF QKG R ++ SG DLDGDLY+V WD L S ++ P + + +
Sbjct: 813 HRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPEL--ESVETFAPADYPRPTSIDIGR 870
Query: 839 HVNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
V + LG I H+V AD++ G D +C LLA L + AVD KTG
Sbjct: 871 DVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLHSKAVDFSKTG 930
Query: 886 KIVTMPSHLKPKKY-PDFM 903
V M + +Y PDF+
Sbjct: 931 IPVNMEDMPRVNRYRPDFL 949
>gi|308476834|ref|XP_003100632.1| CRE-RRF-1 protein [Caenorhabditis remanei]
gi|308264650|gb|EFP08603.1| CRE-RRF-1 protein [Caenorhabditis remanei]
Length = 1680
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 225/461 (48%), Gaps = 87/461 (18%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+ Q F+Q + +S E + + + + QV+ G V++ KNPC+ GDVRI E
Sbjct: 916 ETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCIVTGDVRIFE 975
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT 829
AVD PELHHLCD +VFPQ G RPH +E +GSDLDGD Y V WD+ L+ K+ P + T
Sbjct: 976 AVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLL--LDKNEAPFDFT 1033
Query: 830 PAEA-----KPLTCHVNHQ---------NLGQICNAHVVHADRSEYGAFDENCILLAKLA 875
+ + + + H+ ++G I N H+ ++D +YG C+ LAK
Sbjct: 1034 VEKKEMPYDREMIDQLMHEFYVKYLKLDSVGTISNNHLHNSD--QYGLNSRVCMDLAKKN 1091
Query: 876 ATAVD-----------------SPKTGKIVTMPSHLKPKKYPDF-MEIEEYQTYKSNKIL 917
AVD P+TG+ V P L ++ PD+ + + Y + ++
Sbjct: 1092 CQAVDFTKSGEPPAPLTKKWARDPETGEAV--PPEL-AERVPDYHVGNDNAPVYVTPRLC 1148
Query: 918 GRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGL 977
GRL+R+ + A D+ I +S E + +I D +++ G ++ A + +Y+GQL +
Sbjct: 1149 GRLFREFQ-AIDDVIRISEEREEQ-YEIEIDESIKMEGYENYLTCAEKELANYNGQLRSI 1206
Query: 978 LGQYNVNRK---------EFRHIWS------MPKYNSRKQGELQERLKHSYSAFRKEFRQ 1022
+ Y + + E R+ S M +N+ + ++ R+ FRK F +
Sbjct: 1207 METYGIQSEGEIMSGCILEMRNRISDKDQDDMSFFNTNQM--IETRMTSLVCEFRKRFFE 1264
Query: 1023 VF-------EKMNSDFELSDN------EKNVLYEQKASAWYQVTYHREWVKKSLDLLEQG 1069
F ++ + F+ +++ + L QKA+AWY+ Y ++ +KS
Sbjct: 1265 EFGGYLAVCTQLPNTFDANNSLTYRCEMPSELMMQKATAWYRACY--KFAQKS------- 1315
Query: 1070 SARSVVLLSFAWIANDYLARIK----IKCQEMANIGKSKPV 1106
R LSF WIA D LA++K +K +E+ +I S P+
Sbjct: 1316 --RETRKLSFGWIAYDVLAKVKEHHLLKSEEI-HINSSNPM 1353
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 35/245 (14%)
Query: 384 DDIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITS 443
D VR++V TPT+ + + +R LR F +G + + + T
Sbjct: 510 DGFQRVRKIVFTPTRVIYIAPETIMGNRVLR-RFDKDGTRVIRVTFRDDSNGRLRASTTG 568
Query: 444 NSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK------------ 491
KT + S+G + R Y FL S++Q+RD+ A+F K
Sbjct: 569 EELIDKTAM-----KFFSEGVKVANRDYGFLGCSNSQMRDNGAYFMEKSTFGQRQRLLKN 623
Query: 492 ------VG-ETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHAT-VEIPP----TEVD 538
+G + +L+++ +G F T +N+ K AR+G CF+ + T VE+ T D
Sbjct: 624 NPNANLIGFQPKILEVRRHLGRFETIENVPKMMARLGQCFTQSRLTGVELERSDYCTTFD 683
Query: 539 HELPDIK---RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACW 595
+E K Y +SDG+G ++ A +A+ + G PS QIR+ G KGV+A
Sbjct: 684 YEGAKTKPIVGKCYTYSDGVGIMSYGFAQRLARSMNF-GISVPSCLQIRFRGMKGVIAID 742
Query: 596 PAKDD 600
P D+
Sbjct: 743 PFYDE 747
>gi|353235420|emb|CCA67433.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1169
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 148/539 (27%), Positives = 243/539 (45%), Gaps = 74/539 (13%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET-----SVLDIKNWMGEFTA 509
R+ + +G ++ GR++ LA+SS+ L++H+ WF + + + I+ +G+F+
Sbjct: 445 RIGEFMKNGLSVAGRKFELLAYSSSALKEHAVWFMTPFTTSDGQYITSESIRRSLGDFS- 503
Query: 510 KNI---AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN-GYVFSDGIGKITPDLAME 565
K I A+Y AR+ FSST ++ + E+ +PD + + G +++DG+G I+P A E
Sbjct: 504 KVIYCPARYGARLSQAFSSTEPSITVRVDEIRF-IPDKESDYGSLYTDGVGTISPQAAKE 562
Query: 566 VAQILKLDGS-------PPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT 618
+ S PSA+QIR G KG++ C + G + +R SM KF S
Sbjct: 563 IWHKYTESRSKRNRRRLKRPSAFQIRLGGLKGML-CVDNRLRGRVICVRESMNKFHSDDR 621
Query: 619 SLEICS-WTRFQPGFLNRQIITLLSTL-NVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
+EI + R FLNR +I LL TL V E F +Q + + + D A +L
Sbjct: 622 EVEIARVFDRPMAMFLNRPLIMLLETLKKVPLEPFMALQTKAVEETRDAMKSFDAAARIL 681
Query: 677 ----------TASCAEQGNTAAIML-----SAGFKPQTEPHLQGMLTYELGELK------ 715
S Q + + L S G P LQ + + L +LK
Sbjct: 682 ERYGLGTAFRLTSVFLQLHKLGVSLALKDRSQGLLPFLGRMLQFVENHILRDLKYKARIP 741
Query: 716 --ECQCFIQVSESSLENCFSKHGSRFAETKKL----QVINGFVVIAKNPCLRPGDVRILE 769
+ VS+ E + +A + + Q + G V+I+++P + PGD R++
Sbjct: 742 VPNAWTLVGVSD---EYDYLGENEIYARVRTIDGEEQYLEGPVMISRSPTVHPGDARMVW 798
Query: 770 AVDRPE------LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI------- 816
A+ +P L L +C+VFP KG +G DLDGDLY + D L
Sbjct: 799 AIGKPSRGAPPGLEELTNCVVFPCKGHPSLPQCLAGGDLDGDLYCLVLDPQLHFRWQFQH 858
Query: 817 ----PPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLA 872
PP + A+ + ++ + LG I ++ AD + D +C+ LA
Sbjct: 859 GDYDPPQLVTLDRPSTIKDVAQFVVNYIKNDLLGIISMQCMLIADVRKDCLADPDCVKLA 918
Query: 873 KLAATAVDSPKTGKIVT------MPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK 925
KL + AVD PKTG+ V + S +P Y + + Y+S + +G L+R I+
Sbjct: 919 KLHSIAVDYPKTGRHVESSEIPWLDSRRRPDWYANELHNNNPDLYQSQRHIGHLFRAIE 977
>gi|392597023|gb|EIW86345.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1223
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 179/642 (27%), Positives = 278/642 (43%), Gaps = 100/642 (15%)
Query: 361 EKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFL------ESKDVADRF-- 412
E +K V+E L+ L P D E L+ TP+ + L +S V RF
Sbjct: 407 EAVKAVKEELLAPRGLLTSPLARDGAYEAYHLIFTPST--YILDGPLPDQSNSVLRRFGN 464
Query: 413 ----LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
LRV+F DE AP+ +D +S + KR + I G + G
Sbjct: 465 HECFLRVSFQDENR------------APLRRDF---EYSISELMQKRFRPIFLGGHKVAG 509
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLD-----IKNWMGEFTAKNI--AKYAARMGL 521
R Y FL +S + LR+HS WF + + I+ +G+F+ A+ AR
Sbjct: 510 RHYEFLGYSMSGLREHSVWFVTPFTSDKGITMDAETIRGQLGDFSELQYKPARLGARWSQ 569
Query: 522 CFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSP----- 576
FS+T +V + E+ + +G +DG I+ +LA E+ L
Sbjct: 570 AFSTTDPSVTLERREIQYVNDITSASGNCMTDGCSSISIELAREIWTSLNRTRRRTFPLK 629
Query: 577 -PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEICSWT-RFQPGFL 633
PPSA+Q R G KGVV P +D + + LR S +KF++ + + ++ S T R +P FL
Sbjct: 630 FPPSAFQFRLGGAKGVVVQNPDLNDRV-VCLRKSQRKFEAPNVLTFDVQSHTARPRPMFL 688
Query: 634 NRQIITLLSTL---NVSDEIFWTVQASM-------------ASKLNLMLVASDVAFEVLT 677
NR +I +L L + D I A + A L + + + L
Sbjct: 689 NRPLIAILEHLGEQDTMDRILELQHADIQEAQGVRSSFRDAAKMLQVHGLGASFHLTSLF 748
Query: 678 ASCAEQGNTAAIMLSAGFKPQTE---PHLQGMLTYELGELKECQCFIQVSESSLE----- 729
+ A++ N + Q E L+ + T+ L ELK + I+V S
Sbjct: 749 GNLAKELNMRVWTRESDDGWQNEVVIDALRCISTHALRELK-YRAHIRVPGSYTLMGVSD 807
Query: 730 --NCFSKHGSRFAETKKLQ-----VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDC 782
NC + G FA + ++ I G V + ++P + PGD++++ AV RPEL HL +
Sbjct: 808 EWNCL-RPGEIFATVRDIRNGLDKPIVGRVAVTRSPQIHPGDIQVVTAVRRPELEHLTNV 866
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNH 842
+VF +GDR + G DLDGD + + DE L P + P + C +
Sbjct: 867 VVFSTQGDRALPSFLGGGDLDGDDFNLILDEALFPTANSEPGSYVSLPIKETTHPCGIED 926
Query: 843 -----------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV--- 888
+G+I H+ AD + G +C+ LA+LAA AVD PKTG V
Sbjct: 927 VVDFVFNYFETDLVGRIAIMHLRFADLEDPGC--ASCMTLAELAAQAVDFPKTGTPVDFK 984
Query: 889 TMPSHLKPKKYPDFMEIE------EYQTYKSNKILGRLYRQI 924
+P + PDF+ E + Y+S K+LG L+R++
Sbjct: 985 LLPRLPDKEIKPDFLAREGENPHKNERFYESQKLLGELFRRV 1026
>gi|393244712|gb|EJD52224.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1061
Score = 157 bits (397), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 165/594 (27%), Positives = 275/594 (46%), Gaps = 102/594 (17%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRV F +E + L + +D+ SF V++RV IL +G + GR++
Sbjct: 303 FLRVRFANE-------DRLQFRWP---RDVDGESF-----VYERVGGILKNGIEVAGRKF 347
Query: 472 SFLAFSSNQLRDHSAW----FFSKVGETSVLD-------IKNWMGEFTAKNI---AKYAA 517
FL +S + L +SAW F+++V S I++ +G F AK I + Y A
Sbjct: 348 QFLGYSLSSLHQYSAWFVTDFYAEVEPGSGHRVRVTPQYIRDHLGNF-AKVIDCPSLYGA 406
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIK-RNGYVFSDGIGKITPDLAMEVAQI-----LK 571
RM FS+T T+ + E+++ +PDI+ G + SDG G I+P+L++E+ + +
Sbjct: 407 RMAQAFSATDPTITLADGEIEYNVPDIRTETGELMSDGCGTISPELSLEMNEQRIHGRTR 466
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH-TSLEICSWTRFQP 630
+ +AYQIR G KGVV P + +G ++ LR SM KF + H T +E+ + R
Sbjct: 467 AEWEKVVNAYQIRVGGAKGVVGVDP-RLEGRKLRLRVSMIKFDALHSTDVEVANIARPAR 525
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQASM-----------------ASKLNLMLVASDVAF 673
+LNR +I L TL V +F T+QA++ KL V
Sbjct: 526 MYLNRPLIMTLETLGVRRHVFETLQANVVRTAHEAGDSIRRFIPNVGKLGDRFQLRFVLE 585
Query: 674 EVLTASCAEQGN---TAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSES-SLE 729
+++ C + + T ++L F Q ++ +L L ++K IQV ES +L
Sbjct: 586 QLVDIGCGFRDDCSETDGVVLDDSFVRQL---VKSVLWETLRDVK-YSARIQVPESWTLL 641
Query: 730 NCFSKHGSRFAETKKL-----------QVINGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
+H E + + + + G +I ++P + PGDV+++ + P+
Sbjct: 642 GKVDEHDILTNEKEVMVYVMDSDYPNGKWLEGPALICRSPVMHPGDVQMVTCISPPQGSD 701
Query: 779 -----LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL-IPPSKKSCPPMECTPAE 832
L +C++F KG R + +G D DGD ++++ E L I S P E
Sbjct: 702 PSRCPLINCIIFSAKGTRSLASCLAGGDYDGDEFHISQYEQLFIKKSAHPAPAPEVVERL 761
Query: 833 AKP------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVD 880
P ++N ++G + H++ AD+++ G C+ LA++ + AVD
Sbjct: 762 YVPERQGTIEDVADFFVDYINRDSVGLLARQHLIIADQNDRGVKAPKCLTLAEMYSRAVD 821
Query: 881 SPKTGKIVT---MPSHLKPKKYPDFM------EIEEYQTYKSNKILGRLYRQIK 925
PKTG V MP+ L+ PD++ E Y+S K LG LYR ++
Sbjct: 822 FPKTGIPVPPRDMPA-LEFDAKPDWITNEVAAEEAAGAVYRSTKALGHLYRAVE 874
>gi|402218300|gb|EJT98377.1| RdRP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 908
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 154/571 (26%), Positives = 257/571 (45%), Gaps = 107/571 (18%)
Query: 439 KDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK-----VG 493
+D+ S F V R+ +IL +G L GR + FLA+S + LR HS W + +G
Sbjct: 187 RDVDSRLF-----VGYRIGTILREGVTLAGRHFEFLAYSLSALRQHSVWMVAPFDHPVLG 241
Query: 494 ETSVLDIKNWMGEFT--AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI--KRNGY 549
+ +++ +G+F+ +K A+Y AR+ F++T ++ + P + E+PD K N
Sbjct: 242 LMTANRVRDRLGDFSRVSKCPARYGARLAQAFTATEPSIVLKPENI-VEIPDKINKANKL 300
Query: 550 VFSDGIGKITPDL-------AMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
+F+DG+G ++ +L +E L+ P + +Q R G KG+++ P G+
Sbjct: 301 IFTDGVGGMSLELLEGTWKRLVENRPHLRTKIDFPATVFQFRLGGNKGLLSLNPLL-PGL 359
Query: 603 RMSLRGSMKKFKSCHT-SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
M +R SM KF + + LEI S+ R +P FLNR I LL + V ++F T+Q
Sbjct: 360 VMQVRPSMNKFDAPDSLGLEIAKSFERPRPFFLNRPFIMLLESRGVHADVFLTLQR---- 415
Query: 661 KLNLMLVASDVAFEVLTASCAEQ----GNTAAIML---------------SAGFKPQTEP 701
N + D ++ AS + G T I L G +P
Sbjct: 416 --NAVKAVEDSKSSLIRASIMTETYGLGGTFWIRLILRNIHDILGLDFEAGQGLTTFYDP 473
Query: 702 HLQGMLTY-ELGELKECQ-----------CFIQVSE-------SSLENCFSKHGSRFAET 742
L+ ++ + L+E + I V++ + + C K G
Sbjct: 474 FLKHIIDVGKANALREIRFRARIPVPNSWTLIGVADEHDVLGKNEIYACIHKPGD----- 528
Query: 743 KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE--------LHHLCDCLVFPQKGDRPHT 794
+ I G ++ K+P L PGD + + + RP + L +C+VF +G RP
Sbjct: 529 PEPHWIEGPAIVTKSPSLGPGDAQFVTGIGRPPPDCPFMLGPYPLKNCVVFSCRGVRPIP 588
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL--TC-----------HVN 841
+ G DLDGD + V +L P + P + T AE L C +VN
Sbjct: 589 SMLGGGDLDGDEFNVVQYSSLFP--QYPADPDDYTAAERAELDRDCTMNDVIDFIIDYVN 646
Query: 842 HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV---TMPSHLKPKK 898
+ +G++ H++ AD+ G NC LA+L A A+D KTG + +PS L K
Sbjct: 647 NDLVGRLATEHLILADQHPDGVKYSNCHQLAQLYALALDFAKTGTPIDQDQIPSLLNDMK 706
Query: 899 YPDFMEIEEY------QTYKSNKILGRLYRQ 923
PD+++ E+ + Y+S + LG ++R+
Sbjct: 707 -PDYLQREQQVGKQSTKFYQSQRALGHMFRE 736
>gi|389741441|gb|EIM82629.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1527
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 153/539 (28%), Positives = 231/539 (42%), Gaps = 96/539 (17%)
Query: 463 GFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGL 521
G L G +Y F S++QLR + + + + G+F N+AK A R+GL
Sbjct: 47 GLFLNGVQYRFYGHSNSQLRSGGCFLRRANSDEELDQVVYAKGDFGKIMNVAKRAKRIGL 106
Query: 522 CFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLDGSPPP 578
FS + P + ++ D+K VFSDG G I+ L++++++ I+ P
Sbjct: 107 LFSGAEVDYMLDP-QYTGDIDDLKIGDEVFSDGCGLISRWLSVQISKKKGIVHNRRRYTP 165
Query: 579 SAYQIRYAGYKGVVACWPAKDDGI--RMSLRGSMKKFKSCHTSL-EICSWTRFQP-GFLN 634
+QIRY GYKGV P D + R S KKF + + I +++ G LN
Sbjct: 166 CVFQIRYRGYKGVQMLHPPLDAAKIHQAEFRKSQKKFTATDDMIFSIVDYSKPHTFGRLN 225
Query: 635 RQIITLLSTLNVSDEIF---------WTVQAS----MASKLNLMLVASDVAFEVL----- 676
+I LLS+L V+++ F W +AS A +L L D+A VL
Sbjct: 226 NEITILLSSLGVTNDDFVALQQEYFDWVQRASSDPVHAFELFSTLGKHDIAERVLLDGLD 285
Query: 677 TASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYE------------------LGELKECQ 718
+ + +Q +A F H +G T E G LKE Q
Sbjct: 286 SPTIVKQIRSAQAAEIQAF------HKEGDATKERVRMLIRKSRRLFGVCDPFGVLKEGQ 339
Query: 719 CFIQVSESSLENCFSKHGSRFAETKKLQVINGF-VVIAKNPCLRPGDVRILEAVDRPELH 777
++++ S+ G+ IN V++ +NPCL PGD+ L AVD P+L
Sbjct: 340 VHVRIT-------VSRAGA--------STINHLDVIVVRNPCLHPGDILKLRAVDHPQLS 384
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP---------PSKKSCPPMEC 828
HL DC+VFP G R + +SG DLDGD Y+V WD L+P P K +
Sbjct: 385 HLVDCVVFPSVGKRAAPSMSSGGDLDGDEYFVCWDPRLVPKKISESYTYPPNKEFTQNKI 444
Query: 829 TPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV 888
T + N+ + + H A GA + C L L + AVD G V
Sbjct: 445 TRQDLARHFASYNNSGMAKAAKYHNKWARYPPDGALSKECQELNALYSQAVD----GARV 500
Query: 889 TMPSHLK--PKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
++P+ L P+ PDF IL L ++ + A+ E I ++ +I VD+
Sbjct: 501 SIPARLTEVPESRPDF-------------ILDVLSQEAR-AFSERIDQTAATNITTVDL 545
>gi|402468934|gb|EJW04010.1| hypothetical protein EDEG_01704 [Edhazardia aedis USNM 41457]
Length = 2457
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 104/186 (55%), Gaps = 14/186 (7%)
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
G +V+AKNPCL PGDVRI EAV + EL HL D +VF KG RP N SGSDLDGD Y V
Sbjct: 39 GSIVVAKNPCLHPGDVRIAEAVYKKELEHLQDVIVFSGKGSRPLFNMCSGSDLDGDQYAV 98
Query: 810 TWDENLIPPSKKSCPPMECTPAEAKPLTC----------HVNHQNLGQICNAHVVHADRS 859
WD+ LIP + T K + ++ LG I AH+ +DR
Sbjct: 99 IWDKRLIPTKTVDPDTYDNTTILMKEMVTLNDVINFYVRYMKEDELGLIATAHLATSDR- 157
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGR 919
D+ CI LAKL VD PKTG + +P L P YPDFM ++ YKS+KILG+
Sbjct: 158 -LSIMDKECITLAKLFNKGVDFPKTGYVARLPDDLLPSSYPDFM--QQNSQYKSDKILGK 214
Query: 920 LYRQIK 925
+YR+ K
Sbjct: 215 MYRRCK 220
>gi|121716158|ref|XP_001275688.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
gi|119403845|gb|EAW14262.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
Length = 1203
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 164/610 (26%), Positives = 266/610 (43%), Gaps = 115/610 (18%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D F+RV F DE D+ +S VF R K++L++G + GR
Sbjct: 456 DYFIRVQFCDEQ----------------GGDLHFSSRVTYDEVFSRFKNVLTNGIQIAGR 499
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGLCFSSTHA 528
Y FL +S + LR HS W S + I +G+F+ + A+ AAR+G FS T
Sbjct: 500 TYYFLGWSHSSLRSHSVW-------ASAVCIIKALGDFSKITSPARCAARIGQAFSETPF 552
Query: 529 TVEIPPTEVD-HELPDI--KRNGYVFSDGIGKITPD-LAMEVAQILKLDGSPPPSAYQIR 584
+ + + E+PD+ K FSDG+G ++ + L M + I G P+ +QIR
Sbjct: 553 AIPVEDNTITIEEVPDLASKDGQRFFSDGVGSLSLNVLEMIWSNIPPKKGK--PTGFQIR 610
Query: 585 YAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW-TRFQPGFLNRQIITLLST 643
G KG++A ++ G + +R SM KF+ LEIC ++ P LNRQ+I +L
Sbjct: 611 LGGAKGMIAI-DSRLTGSVIRIRPSMIKFQGEMRDLEICDMASKPIPLVLNRQMIKILED 669
Query: 644 LNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTE--- 700
+ V+++ F+ +Q + L + ++ + Q I L F+ +
Sbjct: 670 MGVAEDWFFRLQNQELTYLRSITASA----QNTAVFIKRQAVGDCIGLFRLFRQCHQWKI 725
Query: 701 ----PHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQ---------- 746
P L+ ++ E L+E + + ++ + G ET+ LQ
Sbjct: 726 NYKVPFLRSLV--EAVILRELRLLKHKARIPVDKGITLFGI-IDETEYLQENEVYVTFNT 782
Query: 747 --------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHL---CDCLVFPQKGDRPHTN 795
G V++ ++P L GD++I PE H L +C+VF KGDR +
Sbjct: 783 IQGRPVAPPTAGPVLVTRSPALYDGDIQICLNTVPPEDHPLRRHRNCIVFSAKGDRDLPS 842
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE----AKPLTCH---------VNH 842
+ SG DLDGD+Y + WD P K++ P + E + + H +
Sbjct: 843 QLSGGDLDGDIYNIIWDPEARP--KRTFAPADYPRVEPVNIGRLVEVHDMADFFIDFMKT 900
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PD 901
+LG I H++ AD+ + G +C LA+L +TAVD KTG V M + + PD
Sbjct: 901 DHLGVIAIRHMIMADQLDEGTSHPDCRKLAQLHSTAVDFSKTGIPVQMEHLPRGNNFRPD 960
Query: 902 FM--------------EIEEY----------------QTYKSNKILGRLYRQI--KGAYD 929
F+ +++Y + Y+S KILG+LYR I + +
Sbjct: 961 FLAPGPQAYMYNKSAIHMDQYIARTEYDEDDDTEPPRKYYRSEKILGKLYRAIDERKIWS 1020
Query: 930 ENISVSSEVD 939
+I + VD
Sbjct: 1021 NDIQCKAAVD 1030
>gi|393247225|gb|EJD54733.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1245
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 168/594 (28%), Positives = 256/594 (43%), Gaps = 107/594 (18%)
Query: 410 DRFLRVTFMDEGLQTM--NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
+ F+RV F D QT +ANV + V V IL +GF L
Sbjct: 480 EHFIRVAFTDNDGQTFRYDANV-----------------DTQALVRSHVLPILQNGFKLG 522
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGET-----SVLDIKNWMGEFTA--KNIAKYAARMG 520
GR + +LA+S + L+ HS W +T S I+ MG FT + A+ ARM
Sbjct: 523 GRLFEYLAYSQSALKQHSVWMVHPFTDTAGRRHSASTIRADMGTFTKDERCPARVGARMS 582
Query: 521 LCFSSTHATVEIPPTEVDHELPDIKRNG-YVFSDGIGKITPDLAMEV--------AQILK 571
L FS+T + E+ + E PDI +G SDG G I+ + V ++
Sbjct: 583 LAFSATEPSGELLSSNRRME-PDIGGDGPACMSDGSGLISIEAMAAVWMEFCRGRSKRTV 641
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH--TSLEIC-SWTRF 628
+ PPPS Q+R G KG + P G + LR SM KF++ +E+C ++T+
Sbjct: 642 IRPPPPPSVIQVRVGGAKGTLFVDPML-PGRAVVLRPSMMKFEAGERFNQIEVCMAFTKP 700
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
P +LNR +I +L V E F +Q + + L + E A G
Sbjct: 701 SPAYLNRPLIMVLEARGVPKETFLRLQQDVVERTQL----ATRTLESAAALLESNGLGGP 756
Query: 689 IMLSAGFK---------PQTEPH-----------LQGMLTYELGELKECQCFIQVSES-S 727
+ L F+ P+ + + L + + L LK + I + S +
Sbjct: 757 VGLPTLFRRIRQRFSNFPEVDSYVLTQDAFVARTLDFTVNHVLRGLK-FRGRIPIPFSWT 815
Query: 728 LENCFSKHG----------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRP--- 774
L HG R + +++ + G VV++++P PGDV I++A+ RP
Sbjct: 816 LVGVPDHHGILNEGEIFVCIREEDISQVEYLEGDVVVSRSPTCHPGDVMIMKAIGRPPAG 875
Query: 775 ---ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM-ECTP 830
+C+VF KG R + G D DGD Y VT +L P+K + P M + TP
Sbjct: 876 TAFATERPINCVVFSTKGARSPGSCLGGGDYDGDEYVVTKLPSL-RPTKPAGPAMYKNTP 934
Query: 831 AE--AKPLTCH---------VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAV 879
+ +P T V + L +I + + AD SE ++E C+ LA+L + AV
Sbjct: 935 RQDIGRPYTMEDIYEFFTNFVINDQLPRIASLWLRIADSSEESVYNEQCMKLAELHSVAV 994
Query: 880 DSPKTGKIVT---MPSHLKPKKYPDFMEIEEY------QTYKSNKILGRLYRQI 924
D PKTG V +P P + PD+ I E + Y+S K LG L+R +
Sbjct: 995 DYPKTGVPVNHSDIPQ--APNRIPDW-SISELGASDRDRVYRSEKALGYLFRAV 1045
>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2285
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 178/659 (27%), Positives = 276/659 (41%), Gaps = 112/659 (16%)
Query: 454 KRVKSILSDGFNLC---GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMG-EFTA 509
K ++ I ++G + G++Y F+ S +Q+R++SAWF + T+ NW G ++ +
Sbjct: 1130 KTIERIFNNGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLEDKVTNEKSALNWSGIKYES 1189
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD-IKRNGYVFSDGIGKITPDLAMEVAQ 568
+ K + L FS+T + I E+ +PD I + G+ F++G G I L + Q
Sbjct: 1190 LQMIKVFRNLCLLFSTTLKSQVIYKIEM---IPDIISKEGHNFTEGCGFIGSKLVELINQ 1246
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK---------SCHTS 619
+ S AYQIR G KGV+ D+ + + +R SM KF+ H +
Sbjct: 1247 QNNYNSS--TCAYQIRLGGSKGVLVLNENIDE-MSLQIRPSMSKFELDYKSGQLDEEHKT 1303
Query: 620 LEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTAS 679
LEI S + LNRQ ITLLS V D F + + +LN A
Sbjct: 1304 LEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQM---LEVELN------------QNAQ 1348
Query: 680 CAEQGNTAAIMLSAGFKPQTEPHLQG-------MLTYELGELKECQ--CFIQVSES-SLE 729
N + +L F+ TE L +L +L + Q C+I+V ES +L
Sbjct: 1349 TLVDVNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKSKLIKIQDKCWIEVKESRNLL 1408
Query: 730 NCFSKHGSR-----FAETKKL---------QVINGFVVIAKNPCLRPGDVRILEAVDRPE 775
G+ + E ++L +VI G V + KNPC PGDVR L+A+D P
Sbjct: 1409 GVCDTSGTLPEDTVYIEVEELDPIDNLMKPKVIIGRVAVLKNPCHHPGDVRFLKAIDHPP 1468
Query: 776 LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP 835
L+ + L F G P+ + SGSDLDGD Y+V +D+ LI + P P
Sbjct: 1469 LNGKRNVLFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLIREDLITHEPYLGEEQTVNP 1528
Query: 836 LTC----------------------------------------HVNHQNLGQICNAHVVH 855
L +V+ LG I N H+
Sbjct: 1529 LIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKLSDIYLKNVDKSKLGTISNTHLAI 1588
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP----SHLKPKKYPDFMEIEEYQTY 911
+D + + N I +A A VDS KT +P S LK K YP FM+I+ T+
Sbjct: 1589 SDIEKVSSI--NSIKVAIQCAIEVDSVKTSVHGIIPRDVKSILKEKGYPHFMKIKNGSTF 1646
Query: 912 KSNKILGRLY----RQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDF-TADARNQ 966
+ R Y R I YD ++ D P + D L V G ++ +
Sbjct: 1647 EYKGGNQRKYYISDRVIGKIYDSAENLLWFGDFLP-EAKVDESLLVQGYKEYLNHENFTT 1705
Query: 967 KCSYDGQLNGLLGQYNVNRKEFRHIWSM-PKYNSRKQGELQERLKHSYSAFRKEFRQVF 1024
Y ++N +L ++ +E I M P+++ + E + K +Y++ +K F F
Sbjct: 1706 YMDYKSKINSILRRFGAQSEEDLLIGFMDPQFSEKLSIEAKAHFKSNYNSIQKLFYHNF 1764
>gi|392567096|gb|EIW60271.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1228
Score = 153 bits (387), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 169/605 (27%), Positives = 274/605 (45%), Gaps = 113/605 (18%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D F+RV F DE + L Y A V T + +RV IL GF L GR
Sbjct: 459 DHFVRVDFRDE-------DRLQYRWAREVDGTTL--------LTERVGGILKHGFELGGR 503
Query: 470 RYSFLAFSSNQLRDHSAWFFSKV-----GETSVLDIKNWMGEFT--AKNIAKYAARMGLC 522
+Y FLA+SS+ LR+H+ WF + G I++ +G+FT K +KYAAR+
Sbjct: 504 QYEFLAYSSSALREHAVWFMNPFEHPTQGFVCAQRIRDSLGDFTNVIKQPSKYAARLAQA 563
Query: 523 FSSTHATVEIPPTEVDHELPDI--KRNGYVFSDGIGKITPDLAMEVAQIL--------KL 572
F++T +V I + + E+ D+ ++ Y+F+DG+G I+ +L + + L ++
Sbjct: 564 FTATDPSVSISRDQWE-EMEDLESEQEDYLFTDGVGTISQELGDMIWEALCTAKESLRRV 622
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS---LEICSWTRFQ 629
D + P AYQIR+ G+KGVV + GI+M LR SM KF+ +EI W +
Sbjct: 623 DHT--PHAYQIRFLGFKGVVVI-DKRLKGIKMRLRPSMNKFEVPDMDIAPIEIARWFD-R 678
Query: 630 PG--FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD-VAFEVLTASCAEQGNT 686
PG +LN+ +I +L V + F +Q A+++ ASD + L G +
Sbjct: 679 PGTSYLNKALIMILEDRGVEQKAFLKLQEMAAAQIT---TASDTITSTTLLLKAHNLGQS 735
Query: 687 AAI------MLSAGFKPQTEP----------HLQGMLTYE----LGELK--------ECQ 718
I + +AG + EP L+ +L + L ++K +
Sbjct: 736 FNIPFVLKALRAAGLGMRGEPDSPAGDLGDTFLRSLLIFAQHHILRDIKHGARIPIPDSY 795
Query: 719 CFIQVSE-------SSLENCFS-KHGSRFA-----ETKKLQVINGFVVIAKNPCLRPGDV 765
+ V++ +E+ F + G +A +K + G V I+++P + PGDV
Sbjct: 796 LLVGVADEGPVYEKEGVEDVFMLQEGQIYACIQNEADEKPVYLKGTVSISRSPVVHPGDV 855
Query: 766 RILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
+ + A+ P C + +V P G R + G DLDGDLY + + LIP
Sbjct: 856 QRVWAIGEPPAGKECFFRGLKNVVVLPSVGKRSLASMLGGGDLDGDLYSIIKYDPLIPIE 915
Query: 820 KKSCPPMECTPAEAKP-------------LTCHVNHQNLGQICNAHVVHADRSEYGAFDE 866
+ P + ++N LG + + H++ AD+S+ G D
Sbjct: 916 HAEPGSYVSVGTRSLPDGRDSTVDDICDFIVEYINSDVLGLLSDRHLIIADQSKDGTSDP 975
Query: 867 NCILLAKLAATAVDSPKTGKIVTM--PSHLKPKKYPDFMEIEEYQT-----YKSNKILGR 919
C+ LA+L + AVD PK G V + L ++ PD+ + E+ Y S++ LG
Sbjct: 976 ACLELARLCSQAVDYPKNGVPVDIFDSPKLLIREKPDWKKAEDSDPRDTDYYFSSRALGE 1035
Query: 920 LYRQI 924
L+R I
Sbjct: 1036 LFRSI 1040
>gi|290988183|ref|XP_002676801.1| predicted protein [Naegleria gruberi]
gi|284090405|gb|EFC44057.1| predicted protein [Naegleria gruberi]
Length = 1650
Score = 153 bits (387), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 220/481 (45%), Gaps = 44/481 (9%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF----TAK 510
++ ++ CG+ Y + S + LR +FF + ++ M F +
Sbjct: 298 KIIDVVPASIECCGKEYRPVGGSLSMLRSDYVYFFDTTAMPACSEVDELMQIFGTYDSNL 357
Query: 511 NIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL 570
N K +R L F++T T I + + ++ +G +DGIGKI+ +A +++ L
Sbjct: 358 NPFKLVSRHALNFTTTKETCTINKWKCVKD--ELAIDGSEMTDGIGKISQSIAQQISNQL 415
Query: 571 KLDGSPPPSAYQIRYAGYKGVVACWPAKD--DGIRMSLRGSMKKF--KSCHTSLEICSWT 626
L P +A QIR+ G+KGV++ P +D DG+ + LR SM KF K +E+ S T
Sbjct: 416 GLVSVP--TALQIRFLGFKGVLSVLPDEDLGDGMDVILRESMCKFNGKEELNKIELVSCT 473
Query: 627 RF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN 685
+P +LN+QII LL+TL ++ E F ++ L+ + + +VL +C +
Sbjct: 474 TARKPAYLNKQIILLLTTLGITKETFLSIFLDYFKDLSEKITSPKYFLKVLKENCMD--- 530
Query: 686 TAAIMLSAGFKPQTE--PHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETK 743
T + S P E +L L Y+ + + + I + ++ + + E +
Sbjct: 531 TLPAIQSLNEMPDDEFLQYLARYLIYDEIKKVQTKAMIPIEKAVIAMSIVDEYKQLKENE 590
Query: 744 KL-QVINGF-------VVIAKNPCLRPGDVRILEAVD----RPELHHLCDCLVFPQKGDR 791
+ Q+ +G V I +NPCL P D++ D R + ++FP +G
Sbjct: 591 VMVQLGDGNYIEDGTQVFICRNPCLHPSDIQTFTCRDNSLLRSKYRPSNAAIIFPTQG-- 648
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIP-------PSKKSCPPMECTPAEAKPLTCHV-NHQ 843
D DGD +V WD LIP P PME T ++ L+ + N +
Sbjct: 649 --YTSIKICDFDGDRVFVCWDSRLIPDQVSNLSPLTHDNEPMESTTEHSEVLSKILENGK 706
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFM 903
LG+I +A V D GA + + LA L AVD PK GK +++P+ K YPDFM
Sbjct: 707 LLGKISDAWVAIVDSE--GADSDRALELADLFVKAVDFPKNGKQISLPNWFKDIIYPDFM 764
Query: 904 E 904
E
Sbjct: 765 E 765
>gi|395333779|gb|EJF66156.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1220
Score = 152 bits (384), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 177/616 (28%), Positives = 260/616 (42%), Gaps = 138/616 (22%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV F DE + L Y A V T + +RV L GF+L GR
Sbjct: 453 DHFLRVDFRDE-------DRLQYRWAREVDGTTL--------LEERVGGTLKHGFDLGGR 497
Query: 470 RYSFLAFSSNQLRDHSAWFFSKV-----GETSVLDIKNWMGEFTA--KNIAKYAARMGLC 522
+ FLA+S + LR+H+ WF + G I++ +G+F+ +KYAAR+
Sbjct: 498 HFEFLAYSQSALREHAVWFMNPFDHPTRGYVDGQRIRDSLGDFSKVIDAPSKYAARLAQA 557
Query: 523 FSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL---KLD---GSP 576
F++T +V I + + E+ D+ Y+F+DG+G I+P L + + L K D
Sbjct: 558 FTATDPSVSISHDQCE-EMSDMGEEPYLFTDGVGTISPKLGDMIWEALCTAKEDLRRHER 616
Query: 577 PPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH---TSLEICSWTRFQPG-- 631
PSAYQIRY GYKG+V + +G++M LR SM KF + +EI W PG
Sbjct: 617 KPSAYQIRYLGYKGMVGI-DERLEGVKMRLRPSMNKFDALDKDVAPIEIARWFD-NPGTS 674
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFE-VLTASCAEQGN----- 685
+LNR ++ +L V +F +Q D A E V+TAS + G
Sbjct: 675 YLNRSLVMILEDRGVDKAVFQKLQ--------------DKAVEAVVTASDSIDGTVTLLK 720
Query: 686 TAAIMLSAGF----------------KPQTEPHLQGMLTYELGELKECQCF--------I 721
T I LS G K T L Y L + I
Sbjct: 721 THNIGLSLGLPYILRGLKAIGMGMKEKEVTTGTLNDTFLYSLIGYAQAHILRDMKHSARI 780
Query: 722 QVSESSLENCFSKHGSRFAETKKLQ-----------------------VINGFVVIAKNP 758
+ +S L + G + E + +Q + G VVI+++P
Sbjct: 781 PIPDSYLLVGLADEGPAY-EAEGVQNVFCLKENQIFACVQNETDDEPTYLQGVVVISRSP 839
Query: 759 CLRPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
+ PGDV+ + A+ +P +C + +V P G R + G DLDGDLY V
Sbjct: 840 VVHPGDVQRVYAIGKPPDDKVCFFRNLRNVVVLPSVGKRSLASMLGGGDLDGDLYSVIKY 899
Query: 813 ENLIPPSKKSCPPMECTPAEAKPL----------TC-----HVNHQNLGQICNAHVVHAD 857
L+P + P P K L C ++N LG + + H++ AD
Sbjct: 900 SPLLP--TEHADPGSYEPVGTKRLPDGRQSTVDDICDFVVEYLNSDVLGLLSDRHLIIAD 957
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY----PDFMEIEEYQT--- 910
+S G D C+ LA+L + AVD PK G V + H P+ PD+ E+
Sbjct: 958 QSREGTNDPACLDLAQLCSQAVDYPKNGIPVDI--HDSPRLLIRFKPDWKMAEDNDPRDT 1015
Query: 911 --YKSNKILGRLYRQI 924
Y S + LG L+R I
Sbjct: 1016 DYYLSPRALGELFRSI 1031
>gi|409046075|gb|EKM55555.1| hypothetical protein PHACADRAFT_161565 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1108
Score = 152 bits (384), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 172/607 (28%), Positives = 274/607 (45%), Gaps = 103/607 (16%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRV+FMDE N L Y +D+ F + KR ++L +G + GR +
Sbjct: 357 FLRVSFMDE-------NRLQYRFD---RDVDGYDF-----IRKRFGTLLFEGLWIAGRHF 401
Query: 472 SFLAFSSNQLRDHSAWFFSKVG--------ETSVLDIKNWMGEFTAKNI----------A 513
FLA+S + L++HS WF +V I +G F +N+ A
Sbjct: 402 KFLAYSQSALKNHSVWFVRDFTAHENGTEVHVTVDSIIAGLGIF--RNVPQDLELMRCPA 459
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGY-VFSDGIGKITPDLAMEVAQILKL 572
+Y AR+ F++T A VE+ EV + NGY F+DGIG ++ +LA ++ L+
Sbjct: 460 RYGARVAQAFTTTEAAVEVEVEEVFPVEDMMDPNGYRSFTDGIGLVSQELAADIWGALQE 519
Query: 573 D-------GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEICS 624
G P A+QIR+ G+KG+++ G + LR SMKKF++ + ++E+ S
Sbjct: 520 KSVRHRRYGRCMPRAFQIRFQGFKGMLSV-DHNLSGRAVCLRLSMKKFEAPESMTIEVAS 578
Query: 625 WTRFQPG--FLNRQIITLLSTLNVSDE--IFWTVQASMASKLNLMLVASDVAFEVLTASC 680
+PG +L+R + LL L V IF T+Q ++ + +F
Sbjct: 579 AFN-KPGRLYLSRPLTMLLEGLKVRGGFGIFKTLQDAVIKDTK----EATRSFRQAATLW 633
Query: 681 AEQGNTAAIMLSA--------GFKPQTEPHLQGMLTYE----LGELKECQCFIQVSESSL 728
G A LS+ G + +P L L + L +LK SL
Sbjct: 634 EAYGLGTAFKLSSIFLDLAKFGSEAIEDPFLLQCLKFGIYHILRDLKYHARIPVPKGYSL 693
Query: 729 ENCFSKHGSRFAETKKLQVINGFVVIAKN--PCLRPGDVRILEAVDRP------ELHHLC 780
HG L+ F +A++ + PGDV++ A+ RP + L
Sbjct: 694 VGVADIHG-------YLKEGEIFACVAQSWSSTIHPGDVQVATAIGRPPPGTVFDEEPLT 746
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP-----------PSKKSCPPMECT 829
+ +VF +G RP + SG DLDGD++ +T E L+P +K+ P
Sbjct: 747 NTVVFSTRGTRPLASCLSGGDLDGDVFMLTTLEGLLPTEIYEPAEYASAQRKTVPHTSTR 806
Query: 830 PAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVT 889
A + + N+G I ++ +V AD+S+ G FDE C+ LA+L + A D PKTG V+
Sbjct: 807 RDVADFILEYFYSDNIGMIVSSWLVQADQSDQGIFDEACLTLAELHSDAADYPKTGNPVS 866
Query: 890 M---PSHLKPKKYPDFM--EIEEYQT--YKSNKILGRLYRQIKGAYDENISVSSEVDINP 942
M P + P PD+ EI++ Y+S + +GRLYR+++ + + N
Sbjct: 867 MRKVPRYALPTMKPDWSAPEIQDRLGLFYQSQRSIGRLYREVQLP----VPRAQPPPANA 922
Query: 943 VDIHYDT 949
D+H +T
Sbjct: 923 FDVHLNT 929
>gi|393244916|gb|EJD52427.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 813
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 152/528 (28%), Positives = 238/528 (45%), Gaps = 76/528 (14%)
Query: 411 RFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
RF+ VTF ++ SYY+ P R+ ++ G G R
Sbjct: 50 RFMVVTF--------DSKAESYYLGP--------------EGLPRLLELMRHGLETGGSR 87
Query: 471 YSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE----FTAKNIAKYAARMGLCFSST 526
+SFL F+ +QL + FF + ++ + + GE F KYAAR+GL FSST
Sbjct: 88 FSFLGFTESQLGAGALLFFEEGDGYTIDSMLEYFGELEPVFVKSGYGKYAARLGLSFSST 147
Query: 527 HATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYA 586
E+ P+++ +G V +DG G I LA ++ +L + + + +Q+R
Sbjct: 148 KPVYELSPSDLISIDDRFALDGTVTTDGCGLIKDSLARQLCILLGIANTT--AIFQVRIG 205
Query: 587 GYKGVVACWP-------AKDDGIRMSLRGSMKKFKSCHTSLEI--CSWTRFQPGFLNRQI 637
G KGV+A +P A++ ++ R SM K++ +E+ S TR LN Q
Sbjct: 206 GIKGVLARYPDDVFERLAQNSVAVIAYRPSMFKYRGGPQIVELNKISKTRPDSARLNIQF 265
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLV--ASDVAF-----EVLTASCAEQG--NTAA 688
I LL TL V E+F + + +++ + S +AF +V S A + A
Sbjct: 266 ILLLLTLGVGVEVFQQLLSIQLERIDNIFSDRKSAIAFLENAYDVTLDSNATRSLYQDAF 325
Query: 689 IMLSAGF---KPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKL 745
+ML AGF +PQ + L + T L L++ + I+V +S++ + E +
Sbjct: 326 LMLHAGFDLSEPQLQWSLNTLRTQMLKRLQD-KLQIEVQDSAMLFGVCDETNSLEEDEVY 384
Query: 746 QVI----NGF----VVIAKNPCLRPGDVRILEAVDRPELHHLC--DCLVFPQKG--DRPH 793
+ GF VV+ KNP PGD+R+ +AVDRP L +C +C+VF R
Sbjct: 385 VNLPERGGGFGGRTVVVMKNPAYAPGDIRVFKAVDRPSL-RICPTNCIVFASSARCGRSP 443
Query: 794 TNEASGSDLDGDLYYVTWDENLIPPSKKS-------------CPPMECTPAEAKPLTCHV 840
++ SG DLDGD ++V+WD +LIP S P AK
Sbjct: 444 ADKMSGGDLDGDTFFVSWDSSLIPSRVASPQPRPKPIPPLQPPPRGPILAEAAKTFIALH 503
Query: 841 NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV 888
N LGQ+ N+ A+ S A D+ C+ L + A+D KTG+ V
Sbjct: 504 NKMLLGQMSNSWKETAENSADIAQDKYCLQLVPMIEAALDITKTGEDV 551
>gi|347841952|emb|CCD56524.1| hypothetical protein [Botryotinia fuckeliana]
Length = 461
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 138/458 (30%), Positives = 212/458 (46%), Gaps = 95/458 (20%)
Query: 690 MLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVIN 749
M S G+ T+P + TY+ EL Q FIQV + EN T + VI
Sbjct: 1 MESMGY---TKPTVAYGTTYKETELP--QIFIQVPDR--EN-----------TTQYNVIE 42
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
G ++ +NP L PGD+R+++AV+ P LHHL D +VFPQ G+R + SG DLDGD ++V
Sbjct: 43 GICLVGRNPSLHPGDLRVVQAVNIPALHHLRDVVVFPQSGERDVPSMCSGGDLDGDDFFV 102
Query: 810 TWDENLIPPSKKSCPPMECTP----AEAKPLTC---------HVNHQNLGQICNAHVVHA 856
WD++L P++ +C PM A +P+ ++ + +L I +AH+ A
Sbjct: 103 IWDKDL-QPTEWNCEPMSYAALDPVALKRPVVVTDLQKFFVKYMKNDSLPSIAHAHLAQA 161
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME-IEE--YQTYKS 913
D + G D C+ LA+L + AVD KTG+ TM +L P K+P FME I + + Y S
Sbjct: 162 DYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATMQKYLAPPKWPHFMEKIHQPASKQYHS 221
Query: 914 NKILGRLYRQIKGA---------YDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADAR 964
KILG+L+ +++ +D+ I + E+D + L+ AR
Sbjct: 222 QKILGQLHDKVESVDFVPQYEEPFDKRILRAYELD--------NATLKA---------AR 264
Query: 965 NQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG---ELQERLKHSYSAFRKEFR 1021
K YD + +L Q ++ + EF +WS + K G +LQE + A + FR
Sbjct: 265 QTKTKYDTAMRRILAQQDI-KTEF-EVWSTFILSKPKVGSDYKLQEDMAVITGALKDRFR 322
Query: 1022 QVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLD--LLEQGSARSV----- 1074
V + S + +A Y+VT K+ LD L E + R+V
Sbjct: 323 SVCINTAGGKDFS------ILGPFVAAMYKVT------KEELDIALAECRTMRTVNGIKV 370
Query: 1075 ----------VLLSFAWIANDYLARIKIKCQEMANIGK 1102
L+SF W+ L RI + + + K
Sbjct: 371 PKRRMRPESMPLISFPWLFEKELGRIATGIEAIDDFEK 408
>gi|403417878|emb|CCM04578.1| predicted protein [Fibroporia radiculosa]
Length = 1258
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 192/736 (26%), Positives = 312/736 (42%), Gaps = 139/736 (18%)
Query: 310 FLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYK-RPVFDAYEKLKDVQE 368
F + A+++ G LN +LS D+ + RE A + +K PV + D +
Sbjct: 363 FQLTALLYNGSLNTEELSALRPDIEKLH-REQASIAASVLQDFKGAPVSPNIRTIVDHRR 421
Query: 369 CL---IKNPKLNEGPKNID-DIAEVRRLVITPTKAYW----FLESKDVA-------DRFL 413
L I ++ G + D +I + TPT+ L+S V DRF+
Sbjct: 422 YLARIIGERTMSLGQQRSDKNIFTCHHVTFTPTRMILEGPSRLQSNSVVREYWENRDRFI 481
Query: 414 RVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSF 473
RV F+DE + +++ SF Q RV +IL GF + R +
Sbjct: 482 RVDFVDENRSHFRLD----------QEVDGASFLQD-----RVGTILKGGFQIASRVFEL 526
Query: 474 LAFSSNQLRDHSAWF---FSKVGET----------SVLDIKNWMGEFTAKNI-AKYAARM 519
L +S++ L DH WF F +V + +I+ +G+ + + AKYAAR+
Sbjct: 527 LGYSNSSLGDHVFWFVNPFERVSRNANGQEVREFITAEEIRRRLGDLSEIALPAKYAARI 586
Query: 520 GLCFSSTHATVEI--PPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL------K 571
G F+ST+ +V++ E E+ + + N DG+G+I+ DLA + + + +
Sbjct: 587 GQAFTSTYFSVQVVEDEWEEIEEILEDRDNPKSHVDGLGRISQDLANAIWEGMCEEEPER 646
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK-----SCHT-------- 618
PSA+QIR+ GYKGVVA + G ++ LR M+KFK C
Sbjct: 647 RAYGVKPSAFQIRFIGYKGVVAV-DRQLKGRKLCLRPEMRKFKPHRCDGCRAKLFCAHLN 705
Query: 619 ----SLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAF 673
SL I ++ + +L R +T+L V DE+F +Q + +S+
Sbjct: 706 NPIQSLHIAEAFHGPRRAYLTRDPVTILEDREVRDEVFENLQDEAKRTTYMARDSSEKYL 765
Query: 674 EVLTA---------------------SCAEQGNTAAIMLSAGFKPQTEPHLQGMLT--YE 710
E+L + C Q ++ F E +Q +L
Sbjct: 766 ELLQSHHLGFQYRLPFLLQRLLDIGLDCGSQILAENVLNDPFFLGLREYGIQHVLRDLKT 825
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV--------------INGFVVIAK 756
+ ++ V + ++K G + K Q+ + G I +
Sbjct: 826 RARIPVPNSYLLVGVADEGPAYTKQGHSVYQLKNGQIFACVQESPDAKPIWLKGLCFITR 885
Query: 757 NPCLRPGDVRILEAVDRPEL--------HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
+P + PGDV+ + A+ +P++ H+ + +V P G R + G DLDGDLYY
Sbjct: 886 SPTVHPGDVQRVTAIGKPDVPDGQICLFEHMKNVVVLPTVGCRSLASCLGGGDLDGDLYY 945
Query: 809 VTWDENLIP---------PSKKSCPPMECTPAEAKPLTCHVNHQN-LGQICNAHVVHADR 858
V L+P P +K PP + T + H + LG + +V AD+
Sbjct: 946 VFHYSQLLPVLHVPPAAYPDEKP-PPRQFTFDDVCDFIVEYMHSDVLGLLSVRRLVIADQ 1004
Query: 859 SEYGAFDENCILLAKLAATAVDSPKTGKIV---TMPSHLKPKKYPDFMEIEE------YQ 909
S+ G+ D+ CI LA+L + AVD PKTG+ V T P L P PD+ E+
Sbjct: 1005 SQEGSLDKRCIELARLCSDAVDYPKTGRAVNSRTAPKKLLPYS-PDWHADEDNISDPLAD 1063
Query: 910 TYKSNKILGRLYRQIK 925
Y+S++ LG+LYR+IK
Sbjct: 1064 CYQSDRALGKLYRRIK 1079
>gi|353237176|emb|CCA69155.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora indica
DSM 11827]
Length = 1262
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 167/633 (26%), Positives = 265/633 (41%), Gaps = 128/633 (20%)
Query: 378 EGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
EGP + +RR V + ++ FLRV F DE + +
Sbjct: 481 EGPHHGQSNGVIRRYV-------------EHSEHFLRVNFTDEERLQIRWD--------- 518
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF-------- 489
+D+ SF V +RV + L +GF++ GR + FLA+S++ LR+HS WF
Sbjct: 519 -RDVDGTSF-----VRERVGNFLKNGFDIGGRHFDFLAYSNSGLREHSMWFVAPFRDRYN 572
Query: 490 ----SKVGETSVLDIKNWMGEFTA-----KNIAKYAARMGLCFSSTHATVEIPPTEVD-- 538
+++ ++DI+ G TA K AK+ AR+ FS+T +E+ EV+
Sbjct: 573 NQVNAEIIRNLIMDIELQKGGDTAEFKLEKQPAKFGARLAQAFSTTEPAIELKEDEVEIK 632
Query: 539 --------HELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKG 590
PD + F+DG G ++ + E+ + L P +R G KG
Sbjct: 633 EDIMVDPKFTKPDGPKTATEFTDGYGCMSLAVRDEIWRALN------PG---VRLGGAKG 683
Query: 591 VVACWPAKDDGIRMSLRGSMKKFKSCHTSLEIC-SWTRFQPGFLNRQIITLLSTLNVSDE 649
V+ P +G ++ L SM KFKS L I + FLNR +I +L L V +
Sbjct: 684 VLGINPTL-EGRKVVLHRSMVKFKSKDYGLHIAFKFDHPLKLFLNRPLIAILEHLGVQID 742
Query: 650 IFWTVQASMASKLNLMLVASD-------------VAFEV-LTASCAEQGNTAAIMLSAGF 695
F + + SK+N L++ D + F++ E+ + L
Sbjct: 743 WFKRLLVNAQSKMNSTLLSIDEGAAEFFESRRLGLPFDLPRILRSLEKYEVTRVKLQEYD 802
Query: 696 KP----------QTEPHLQGMLTYELGELKECQC-FIQVSESSLE----NCFSKHGSRFA 740
P + H+ L Y+ C + V + +E + R
Sbjct: 803 HPFNDFWLRCLDVAKAHIDRELKYKARIPVPFGCSLVGVPDVHMELEADEVYICKQERDR 862
Query: 741 ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL-----HHLCDCLVFPQKGDRPHTN 795
E K G+V I ++P + PGDV+ +A P H + + +VF KG RP +
Sbjct: 863 EPKWFPEKPGYVYITRSPSIHPGDVQKFKAKHPPRGSVYYNHPVVNAVVFSCKGARPPAS 922
Query: 796 EASGSDLDGDLYYVTWDE-----NLIPPSKKSCPPMECTPAEAKPLTC---------HVN 841
G D+DGDL+ + ++ + PP+ +E T +P T ++N
Sbjct: 923 MLGGGDVDGDLFQIIPEKPDFKLEVGPPASYE---VEDTLTLERPTTIEDIADFVVEYIN 979
Query: 842 HQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-- 899
+G + H++ AD+S G D C+ LA+L + AVD K+GK V+ PK+Y
Sbjct: 980 SDKMGLVAIQHLILADQSNSGLHDPKCLKLAELHSKAVDFAKSGKPVSFQD--LPKRYFP 1037
Query: 900 --PDFMEIE-----EYQTYKSNKILGRLYRQIK 925
PDF E + Y+S K LG LYR IK
Sbjct: 1038 YTPDFQHKETRFDDQTSYYESPKALGVLYRMIK 1070
>gi|170117206|ref|XP_001889791.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164635257|gb|EDQ99567.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1690
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 143/484 (29%), Positives = 212/484 (43%), Gaps = 49/484 (10%)
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAK 514
+ +L GF L +Y F S++QLR S + + + D +G+F NIAK
Sbjct: 93 IARLLKAGFFLNDIQYRFYHHSNSQLRGRSCFLRQANNDKELDDRIYQLGDFGRIMNIAK 152
Query: 515 YAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL-- 572
A R+GL FSS + P + ++PDI+ +FSDG G I+ L++ +++ ++
Sbjct: 153 RAKRIGLLFSSAQIDYRLDPKYI-ADIPDIQDGDELFSDGCGLISKRLSIALSKAKRITF 211
Query: 573 -DGSPPPSAYQIRYAGYKGVVACWPAKD-DGIRMS-LRGSMKKFKSC--HTSLEICSWTR 627
+ P+ +QIRY GYKGV+ P D +G ++ R SMKKF + HT +
Sbjct: 212 RNVRYTPTVFQIRYLGYKGVLMLHPQLDAEGKHLAQFRKSMKKFTTTTDHTFSVVGHSRP 271
Query: 628 FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA 687
+ G LN II LLS L V++E Q L A + L SC +Q A
Sbjct: 272 YTFGRLNNDIIVLLSCLGVTNEKLLNKQDEYFQWLRNATEDPTAAVDFL--SCIDQYPLA 329
Query: 688 AIMLSAGFK-PQTEPHLQGMLTYELGELK---------ECQCFIQVSESSLENC----FS 733
+L G P ++ + +LGE+ + + I+ S C
Sbjct: 330 GKVLLNGINDPDVAKEIRRL---QLGEIARYTDEREKFKSRMIIRESRRLFGVCDPFQVL 386
Query: 734 KHGS---RFAETKK--LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF--- 785
K G R ++K I+G V+I +NPCL PGD L AV +L HL DCLVF
Sbjct: 387 KEGEVHIRIMASRKGPSTPIHGDVLIVRNPCLHPGDCLKLRAVHNDKLSHLVDCLVFASV 446
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLIP---------PSKKSCPPMECTPAEAKPL 836
+ G + +SG DLDGD + V WD++L+P P K + T +
Sbjct: 447 ARPGHHAAPSMSSGGDLDGDEFLVCWDKDLVPPRISESYDYPGNKERISKKVTREDLAVH 506
Query: 837 TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKP 896
N L ++ H A S GA C L L + +VD G + +P L
Sbjct: 507 FASYNAAGLARVSALHNKWARYSPQGALSVQCQELNALHSQSVD----GAGIKIPDRLTK 562
Query: 897 KKYP 900
P
Sbjct: 563 PPEP 566
>gi|392569009|gb|EIW62183.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 793
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 187/393 (47%), Gaps = 38/393 (9%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA----KNIAKY 515
+ +G + G RY FL F+ +Q++ FF + +V + G+ +A KY
Sbjct: 65 VREGVEINGVRYRFLGFTESQVKAGKLMFFREGHGWTVERLLASFGDLSAVYLKSGYGKY 124
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKR-NGYVFSDGIGKITPDLAMEVAQILKLDG 574
+AR+GL FSST ++++ P E HE+PD+K +G +++DG G I A ++ K +
Sbjct: 125 SARLGLSFSSTVESLDV-PREAAHEMPDLKAPDGSLYTDGCGMIRDSFAKKLCT--KHNF 181
Query: 575 SPPPSAYQIRYAGYKGVVACWP---------AKDDGIRMSLRGSMKKFKSCHTSLEICSW 625
P S +Q+R G KG++ +P ++ R SM K++ T LEI +
Sbjct: 182 PPDTSVFQVRRGGIKGLLVRYPDEKFERLGGTSSSSHLIAYRPSMYKYEDGPTMLEINNH 241
Query: 626 TR-FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEV----LTASC 680
P LN Q LL +L V ++F + + ++ + A L A
Sbjct: 242 NLPPAPAHLNVQFTVLLLSLGVPVDVFKRLLQDQVDIIGSIVTDREKALHYIKGELDAGV 301
Query: 681 AEQGNTAAIMLSAGFKPQTEPHL-QGMLTYE------------LGELKECQCFIQVSESS 727
+ N + + +EP++ Q +L Y+ L + C F V E S
Sbjct: 302 EDGLNQSLYAMLLAQHDLSEPYVRQRLLKYQEVQYESLRRKMNLRIMDSCYVFGVVDEDS 361
Query: 728 LENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
+ + + A + ++ VV+A+NP PGD+R L AVDRP+L H +C+VFP+
Sbjct: 362 VLAPGEVYVNLPARSG---ILVRDVVVARNPSYHPGDIRKLRAVDRPQLRHHRNCIVFPR 418
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
KG R + S DLDGD+Y+V W+ LIP ++
Sbjct: 419 KGPRSVPDTISSGDLDGDMYFVAWEPTLIPSTE 451
>gi|241633128|ref|XP_002410399.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503416|gb|EEC12910.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 756
Score = 149 bits (377), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 209/442 (47%), Gaps = 64/442 (14%)
Query: 304 VSFEIMFLVNAVMHKG--------ILNQ---HQLSDSFFDLLRCQPREVIVTALKHIYSY 352
+SF + +NAV+ +G +L Q H ++ D R + AL I S
Sbjct: 320 LSFSCCYALNAVLQQGNDAVAQMVLLQQQAFHNFVNNLVDFARAN-EGALEQALFCIRSA 378
Query: 353 --KRPVFDAYEKLKDV--QECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV 408
R + + + L ++ + CL P PK VRR+ +TP+ ++ +
Sbjct: 379 IEARSIVNVHVTLPELFRKFCLAYVP-----PKVPRGSCLVRRVFVTPSCVFFLPPNVHS 433
Query: 409 ADRFLR---------VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSI 459
+R LR V+F D+ LQ ++ +++ + + D V
Sbjct: 434 ENRVLRCFDAEYALRVSFRDDNLQHLSHSLMFHRQKEEMVDTI-------------VAKF 480
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS--KVGETSVLDIKNWMGEFTA-KNIAKYA 516
L G + GR++ FLA S +QLRDH W ++ + G T+ I+ WMG+F+A N+AK
Sbjct: 481 LRTGIEVGGRQFKFLASSCSQLRDHGVWLYAMDRQGFTAE-SIRRWMGDFSAIPNVAKKM 539
Query: 517 ARMGLCFSSTHATVEIPPTEVD-HELPD-------IKRNGYVFSDGIGKITPDLAMEVAQ 568
ARMG CFSST +V++P + E+PD + + FSDGIG I+ L +V +
Sbjct: 540 ARMGQCFSSTEESVKVPLHGGNMEEVPDVVGGVHPVSGKEFTFSDGIGMISTSLMQKVCK 599
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEICSWTR 627
KLD + PSA QIRYAGYKG++ C + G ++ LR SM+KF ++ SLE+ +
Sbjct: 600 --KLDLAEVPSAIQIRYAGYKGML-CVNPELRGDKLVLRDSMRKFSCSNSDSLEVIKVSA 656
Query: 628 FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTA 687
+ +LNR +IT+L L V +F +Q M LV A VL C G T
Sbjct: 657 PRTVYLNRFLITILEQLGVPSRVFLCLQQKMMLTFADALVCESTALRVL---CTYVGGTL 713
Query: 688 AIML--SAGFKPQTEPHLQGML 707
+ GF +P ++ +L
Sbjct: 714 PFLRLQQNGFCLARDPFVRLLL 735
>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
Length = 2292
Score = 149 bits (377), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 218/806 (27%), Positives = 338/806 (41%), Gaps = 134/806 (16%)
Query: 305 SFEIMFLVNAVMHKGILNQHQLSDSFFD-----LLRC---QPREVIVTALKHIYSYKRPV 356
S EI +L+N + + + L+ SF D L R Q R +I AL S K
Sbjct: 989 SKEIYYLLNCIDSQRSYGK-MLTQSFIDQIGQFLARNKIKQARYIISQAL----SNKTKF 1043
Query: 357 FDAYEKLKDVQECLIKNPK---LNEGPKNIDDI-AEVRRLVITPTKAYWF---LESKDVA 409
FD K + + NPK ++ DD+ V+ + +TPT+ L S +
Sbjct: 1044 FDYTNLFKRIDQDSDNNPKSDLFDDFQLKGDDLFIPVKEVFVTPTRIVLVPPRLTSGNRV 1103
Query: 410 --------DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
RFL F DE + S+ P++ D G K +K+ L
Sbjct: 1104 IRSFGNDPSRFLLYNFTDENFEPFLGLNKSH---PLILD----------GQSKHLKNGL- 1149
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGL 521
+ L G Y ++ S +Q + +SAWF+ + + + D W G T+ + K + L
Sbjct: 1150 EIIPLSGEYYRYIGNSQSQSKKYSAWFYLEDPKYKIEDAFKWSGIDTSIPMRKVYRQFCL 1209
Query: 522 CFSSTHATVEIPPTEVDHELPDI--KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPS 579
FSST ++ I ++ + D+ + F++G G I L + + K++ P
Sbjct: 1210 LFSSTSKSIVIDKSKY-KTIDDVYDSTGAHNFTEGCGIIGKYLVDAINK--KMNYHPCTC 1266
Query: 580 AYQIRYAGYKGVVACWPAKDDGIRMS-------------LRGSMKKF------KSCHTSL 620
AYQIR G KGVV D I + +R SM KF H +L
Sbjct: 1267 AYQIRIGGSKGVVVLNDT--DSISLGNGKSIPMDPTCIYIRESMTKFMKDPSDDETHRTL 1324
Query: 621 EICSWTRFQPGFLNRQIITLLSTLNVSDE---IFWTVQASMASKLNLML---VASDVAFE 674
EI S + LNRQ I LL LN E I + S+ ++ ++ D+ E
Sbjct: 1325 EIISVSTTSRCKLNRQAINLL--LNAGTEESSILSFLDKSLNENAQTLVDIGLSKDLLNE 1382
Query: 675 VL-TASCAEQGNTAAI--MLSAGFKP-----QTEPHLQ--------GMLTYELGELKECQ 718
S E N I ++ FK Q + H++ G+ + G+L Q
Sbjct: 1383 FYPNISEYELFNDYYIRTIVLKHFKTKLLRIQDKCHIEVEDSRNVLGVTDFS-GKLGPNQ 1441
Query: 719 CFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
+++V++ N + +VI G V + KNPC PGD+RILEAVD P LH
Sbjct: 1442 VYLEVADFDDNNNIIRS----------KVITGRVAVLKNPCHHPGDIRILEAVDIPLLHG 1491
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM------ECTPAE 832
+ L F G+ P+ E SGSDLDGD Y++ +D LI K+ P E
Sbjct: 1492 KRNILFFSINGEVPNFKECSGSDLDGDRYFIVYDNVLINDKMKNSDPYLGESVAATVGGE 1551
Query: 833 AKPL----TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIV 888
+ L +++ NLG++ N H++ +D G E I LA A VDS KT K
Sbjct: 1552 GEGLHDVYLFNIDKTNLGKLSNKHLIISDLE--GVDSEIAIDLAIQCAIEVDSVKTNKHG 1609
Query: 889 TMPSHLKPKK----YPDFMEIEEYQT---YKSNKILGRLYRQIKGAYDENISVSSEVDIN 941
+P++ K P FM T Y S+K++G++ YD + D
Sbjct: 1610 VLPANAKAAMNKCGIPHFMASTTLGTTNIYHSDKVIGQI-------YDSASRLMWFGDFL 1662
Query: 942 PVDIHYDTDLEVPGSVDFTADARNQKCS--YDGQLNGLLGQYNVNRKEFRHI-WSMPKYN 998
P +I D ++ V G ++ D +N Y ++N LL Y N +E + + PK
Sbjct: 1663 P-EIKVDENMLVDGYKNY-IDQKNLITYRLYKTRINNLLRIYGSNSEEDLLLGFVDPKLV 1720
Query: 999 SRKQGELQERLKHSYSAFRKEFRQVF 1024
+ +++ ++K Y + EF Q F
Sbjct: 1721 EKWTNDVKRQIKEKYFKIQDEFYQYF 1746
>gi|390594179|gb|EIN03593.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 973
Score = 149 bits (376), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 157/546 (28%), Positives = 235/546 (43%), Gaps = 117/546 (21%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D F+RV F +E Y+ +D+ F V R+ +L +GF +
Sbjct: 461 DHQQHFVRVQFTEE----------DYHQLRFDRDVDGEHF-----VKTRIGGVLRNGFQV 505
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSK--------VGETSVLDIKNWMGEFTAKNI---AKY 515
GR + FLA+S + L+DH+ WF + G T I+ +G F K I + Y
Sbjct: 506 GGRTFEFLAYSQSALKDHAVWFVRRFKIDNQWITGNT----IRESLGSFD-KVIYCPSLY 560
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKR-----NGYVFSDGIGKITPDLAMEVAQIL 570
ARM F++T +V I E+ +PDI+R + F+DG+G I+P+LA E+ L
Sbjct: 561 GARMSQAFTATDPSVTITAEEIV-RIPDIERRDSTGRTWQFTDGVGTISPELAQEITTAL 619
Query: 571 ------KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICS 624
K P A+QIR AG KG+V+ K G + LR SM KF+S + SL+I
Sbjct: 620 VARSRRKKGRYFRPRAFQIRIAGSKGMVSV-NHKLHGRVLCLRPSMIKFESPN-SLDIEI 677
Query: 625 WTRF-QPG--FLNRQIITLLSTLNVSDEIFWTVQ-----------ASMASKLNLM----- 665
F +PG LNR ++ LL L V + F +Q S+ ++
Sbjct: 678 AKTFDKPGKFLLNRPLVMLLEGLGVPADEFMKLQNAAVEDTKAASRSLTKAAQILETHGL 737
Query: 666 -----LVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTE---PHLQGMLTYELGELKEC 717
L + + E L +GN F+ + E + + + L ELK
Sbjct: 738 GTAFRLTSVFLGLERLGVDLTRRGNR--------FRLEDEFIHRAIAYAINHVLRELKHH 789
Query: 718 QCFIQVSESSLENCFSKHG-------------SRFAETKKLQVINGFVVIAKNPCLRPGD 764
S +L HG S E LQ G V+I ++P + PGD
Sbjct: 790 ARIPVPSSWTLVGIADIHGVLKEGEVFACIQPSHGGEKIYLQ---GPVMITRSPVIHPGD 846
Query: 765 VRILEAVDRP------ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
V++L AV RP +L + + ++F KG RP +E G DLDGD++ V+ ++ P
Sbjct: 847 VQMLRAVGRPPAGSIYDLEPIPNTVIFSIKGSRPTASELGGGDLDGDVFNVSQYFDIFP- 905
Query: 819 SKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFD 865
KK P AE K L +N+ NLG I ++ AD+S FD
Sbjct: 906 -KKCYMPASYATAERKMLDRPSDVGDVIDFVVDFINNDNLGLIATNWLIIADQSPESIFD 964
Query: 866 ENCILL 871
+ C+ L
Sbjct: 965 DACLQL 970
>gi|406695038|gb|EKC98353.1| RNA-dependent RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1018
Score = 148 bits (374), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 140/484 (28%), Positives = 215/484 (44%), Gaps = 80/484 (16%)
Query: 359 AYEKLKDVQECLIKNPKLNEGPKNID-DIAEVRRLVITPTKAYW-----------FLESK 406
A E++++V ++K L G + I +R + +TPT+
Sbjct: 349 AEERVRNVY-TVVKPAALRRGEFPVSRHIVMIRTVTVTPTRVLVGPPQPETSNSVTRRYS 407
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D +RV F DEG + +N + + P ++ + G+ RV+ L G +
Sbjct: 408 DKLDAIIRVHFTDEG-ERLN---VQKFTKP------ADDACPEKGLMARVRRALQYGIEV 457
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD---IKNWMGEFTAKNIAKYAARMGLCF 523
G RY +A S +Q +DH+ WF + +V+D + WMG+ + +AK+AAR+GL F
Sbjct: 458 AGCRYYPVASSGSQQKDHNMWFI----DHTVIDRPELSRWMGQVKEQVVAKHAARLGLPF 513
Query: 524 SSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL--KLDGSPPPSAY 581
S++ A V + T D L D+ RN + F+DG G D+ + A+ + K PSA
Sbjct: 514 SASRA-VALKVTVSD--LADVFRNDHCFTDGCGVAGIDVMRQAARSMNNKRKTGEAPSAL 570
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
Q R G KGV+A WP + +R S KF+S L + ++Q FLNRQ I ++
Sbjct: 571 QFRLGGAKGVLAYWPGMAGNDEILMRPSQTKFESRLKELNVVRIAKYQAAFLNRQFINIM 630
Query: 642 STLNVSDEIF--WTVQASMA-------------SKLNLMLVASDVAFEVLT--------- 677
S V D +F V+A+ A +K +L+L F ++
Sbjct: 631 SACGVPDALFEQLFVEATQAIEGLPDRAVLRDLTKDDLVLFQQYTEFPMVQVIDAGFARN 690
Query: 678 ------ASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENC 731
A E + A K +L G+ E G LKE + F+Q
Sbjct: 691 PMIQDLARLVEARALQDLKWRARVKLDMGVYLIGVAD-ETGLLKEGEVFVQY-------- 741
Query: 732 FSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
+ E + V+ G VV+ + P L PGDVR AVD P+L HL + +VF KG R
Sbjct: 742 ------QVTENDEPVVVTGAVVVCRAPALHPGDVRTARAVDHPQLRHLKNVVVFSIKGAR 795
Query: 792 PHTN 795
P N
Sbjct: 796 PLPN 799
>gi|409080807|gb|EKM81167.1| hypothetical protein AGABI1DRAFT_56570 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1201
Score = 148 bits (374), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 166/592 (28%), Positives = 260/592 (43%), Gaps = 96/592 (16%)
Query: 405 SKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGF 464
SK + FLRV F DE N L Y KDI F V +R+ + +G
Sbjct: 426 SKANHENFLRVEFRDE-------NNLQYRSD---KDIDDEEF-----VRRRLGHFMHEGL 470
Query: 465 NLCGRRYSFLAFSSNQLRDHSAWFFS-----KVGETSVLDIKNWMGEFTAKNI------- 512
+ GRR+ FLA+S + LR+HS WF K G + I +G F
Sbjct: 471 VIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIVNAGKIIESLGNFRDLAYDRTLGYC 530
Query: 513 -AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN------GYVFSDGIGKITPDLAME 565
A++ AR+ FS+T A + EVD L IKR+ Y F+DG G ++ DLA +
Sbjct: 531 PARFGARVSQAFSATDAAI----VEVDEIL--IKRDITTPDGQYTFTDGSGDMSADLARD 584
Query: 566 VAQIL--KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEI 622
+ + K D + P AYQIR+ G KG+++ + +SLR SM KF + ++ +E+
Sbjct: 585 IWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYRLNGSNTLSLRDSMIKFDAPESNEIEV 644
Query: 623 C-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC- 680
+ + P +LNR +I +L L V E+F Q + A +L A
Sbjct: 645 SRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAVRGTQQAMEHLSSASHLLQAHGL 704
Query: 681 -------AEQGNTAAIML-SAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCF 732
+ N + + L + P + L+ + + L +LK + +L
Sbjct: 705 GLTFKIPSTMANLSKLDLDNLARDPLFDQPLRLGVYHVLRDLKYKARIPIPNAWTLVGVA 764
Query: 733 SKHGSRFAE---------TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE------LH 777
HG A+ K + G V+I+++P + PGDV++ A+ P
Sbjct: 765 DTHGYLKADEVFVCIKHPEKGSFYLEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFARE 824
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLY---------YVTWDENLIP----PSKKSCP 824
L + +VF KGDRP + G DLDGD Y Y T ++ P ++K
Sbjct: 825 PLPNTVVFSVKGDRPLPSCLGGGDLDGDPYNIIPLRDHPYFTPEKTYEPANYEAAEKQLT 884
Query: 825 PMECTPAE-AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
CT + A + ++ +G + ++ AD+ + D++C++LAKL + AVD PK
Sbjct: 885 EWPCTMKDVADFVMQYIVSDVIGVVATNWLIIADQRQ-DITDDDCLVLAKLHSDAVDYPK 943
Query: 884 TGKIVT---MPSHLKPKKYPDFMEIEEYQT--------YKSNKILGRLYRQI 924
TG+ V +P PK PD++ E + Y+S LG+L R I
Sbjct: 944 TGRPVQQDHIPRPRNPK--PDWLAPETLENVLSQGGRYYESQTALGKLTRAI 993
>gi|389751599|gb|EIM92672.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1228
Score = 148 bits (374), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 159/585 (27%), Positives = 264/585 (45%), Gaps = 94/585 (16%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV+FMDE +N +DI F + + IL +G + GR
Sbjct: 453 DCFLRVSFMDENRLQYRSN----------RDIDGPLF-----INSWITRILHEGMVVAGR 497
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKN---WMGEFTAKNI--------AKYAAR 518
++ FL +S + L+ H+ WF E L ++N +G+F A+Y AR
Sbjct: 498 KFRFLGYSQSALKSHTVWFVLDDPERPELRVENIIRGLGQFDNLKYDRQLIYCPARYGAR 557
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDG---- 574
+ F++T ++ + EV L DIKR + F++G+G ++ +A +++ LK G
Sbjct: 558 ISQAFTATDPSIVVRAEEV-FLLEDIKRGQWCFTEGVGTLSRAMAKAISKTLKDSGKRAF 616
Query: 575 ---SPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEIC-SWTRFQ 629
+ P A+Q+R+ G KGVV P + G + +R SM KF++ + +EI ++ R
Sbjct: 617 RRLTTHPGAFQVRFQGSKGVVTVDP-RLRGNAICVRPSMIKFEAPESLDVEIAQAFDRPS 675
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAI 689
+LNR +I +L L V +F +Q ++++ + E++ A G +
Sbjct: 676 KYYLNRPLIMILEALGVPYRVFDRLQTRAITQVHKASRSLRGLAEIMEA----YGLGTSY 731
Query: 690 MLSAGFKPQTEPHLQG-------------MLTYELGELK-ECQCFIQVSESSLENCFSKH 735
L + F ++ H++ + + L +LK + + +L H
Sbjct: 732 RLPSIFLSLSKLHVEAPPDDSFFHRVNDFTVHHILRDLKHHARIPLDRHGWTLVGVADIH 791
Query: 736 G----------SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE-----LHHLC 780
G R + + + G V+++++P + PGDV++L AV P L
Sbjct: 792 GWLREKEVYAYIRLPDGEAF-YLEGRVMVSRSPTIHPGDVQVLTAVKPPHGSIYLREPLA 850
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL---- 836
+ LVF +G RP G DLDGDLY VT L+PP K+ P PA + L
Sbjct: 851 NTLVFSIQGTRPVYTGLGGGDLDGDLYNVTTLRELMPP--KNYHPANYDPAVKRILDRRS 908
Query: 837 TCH---------VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
T H +N +G + ++ AD+S G FD +C+ L +L + AVD PK+G
Sbjct: 909 TIHDIADFVADYINSDIIGLVAINWLIIADQSPQGIFDPDCLSLCELHSNAVDYPKSGNP 968
Query: 888 VTMPS--HLKPKKYPDFMEIEEYQT------YKSNKILGRLYRQI 924
V+ + LK PD+ E Y+S K +GRL+R +
Sbjct: 969 VSAKAIPFLKFSAKPDWNAPETVDLKDTANYYQSEKAIGRLFRAV 1013
>gi|426197722|gb|EKV47649.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1202
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 166/592 (28%), Positives = 260/592 (43%), Gaps = 96/592 (16%)
Query: 405 SKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGF 464
SK + FLRV F DE N L Y KDI F V +R+ + +G
Sbjct: 428 SKANHENFLRVEFRDE-------NNLQYRSD---KDIDDEEF-----VRRRLGHFMHEGL 472
Query: 465 NLCGRRYSFLAFSSNQLRDHSAWFFS-----KVGETSVLDIKNWMGEFTAKNI------- 512
+ GRR+ FLA+S + LR+HS WF K G + I +G F
Sbjct: 473 VIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIVNAGKIIESLGNFRDLAYDRTLGYC 532
Query: 513 -AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN------GYVFSDGIGKITPDLAME 565
A++ AR+ FS+T A + EVD L IKR+ Y F+DG G ++ DLA +
Sbjct: 533 PARFGARVSQAFSATDAAI----VEVDEIL--IKRDITTPDGQYTFTDGSGDMSADLARD 586
Query: 566 VAQIL--KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEI 622
+ + K D + P AYQIR+ G KG+++ + +SLR SM KF + ++ +E+
Sbjct: 587 IWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYRLNGSNTLSLRDSMIKFDAPESNEIEV 646
Query: 623 C-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC- 680
+ + P +LNR +I +L L V E+F Q + A +L A
Sbjct: 647 SRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAVRGTQQAMEHLSSASHLLQAHGL 706
Query: 681 -------AEQGNTAAIMLSAGFK-PQTEPHLQGMLTYELGELKECQCFIQVSESSLENCF 732
+ N + + L + P + L+ + + L +LK + +L
Sbjct: 707 GLTFKIPSTMANLSKLDLDNLVRDPLFDQPLRLGVYHVLRDLKYKARIPIPNAWTLVGVA 766
Query: 733 SKHGSRFAE---------TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE------LH 777
HG A+ K + G V+I+++P + PGDV++ A+ P
Sbjct: 767 DTHGYLKADEVFVCIKHPEKGSFYLEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFARE 826
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLY---------YVTWDENLIP----PSKKSCP 824
L + +VF KGDRP + G DLDGD Y Y T ++ P ++K
Sbjct: 827 PLPNTVVFSVKGDRPLPSCLGGGDLDGDPYNIIPLRDHPYFTPEKTYEPANYEAAEKQLT 886
Query: 825 PMECTPAE-AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
CT + A + ++ +G + ++ AD+ + D++C++LAKL + AVD PK
Sbjct: 887 EWPCTMKDVADFVMQYIVSDVIGVVATNWLIIADQRK-DITDDDCLVLAKLHSDAVDYPK 945
Query: 884 TGKIVT---MPSHLKPKKYPDFMEIEEYQT--------YKSNKILGRLYRQI 924
TG+ V +P PK PD++ E + Y+S LG+L R I
Sbjct: 946 TGRPVQQDHIPRPRNPK--PDWLAPETLENVLSQGGRYYESQTALGKLTRAI 995
>gi|353236430|emb|CCA68425.1| related to NAM7-nonsense-mediated mRNA decay protein (RdRP)
[Piriformospora indica DSM 11827]
Length = 678
Score = 147 bits (372), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 181/387 (46%), Gaps = 38/387 (9%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAAR 518
L+ G L G++Y F S++QLR HS + E + +G+F + + AK A R
Sbjct: 97 LTSGVTLNGKKYFFYGHSNSQLRSHSCFLRQGRSEADIHSRILSLGDFKSIDSPAKLAKR 156
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVA---QILKLDGS 575
+GL FS+ + P+ ++PD+ +FSDG G I+ A +A Q +
Sbjct: 157 IGLLFSAAEQDSVLDPSHT-RDIPDLMVGDTLFSDGCGLISQAYARLLAKKKQAIFRQVK 215
Query: 576 PPPSAYQIRYAGYKGVVACWP---AKDDGIRMSLRGSMKKFKSC-HTSLEICSWT-RFQP 630
PS +QIRY GYKGV+ P +++DG + R SM+KF + +L I ++ +
Sbjct: 216 YVPSVFQIRYKGYKGVLMLHPPLDSQNDGY-VHFRKSMRKFTGVPNDTLSIIKYSVPYTY 274
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIM 690
G LN +I+ LLS+L +SDE+ + S L + A + +S + I+
Sbjct: 275 GRLNNEIVALLSSLGISDEVLLGKLRAYMSWLRTVCTNLSSALD-FVSSIDKHSLVERIL 333
Query: 691 LSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVI-- 748
L + L+ L E+ + K+ + + + L + F Q++
Sbjct: 334 LEGIDSAGIQRELKKALKQEIEKFKK----VDIEKKKLRVLVNNSRRLFGVCDPFQILRE 389
Query: 749 ------------------NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD 790
+ V+I +NPC+ PGD L AVD+PEL HL DC+VF KG
Sbjct: 390 GEVFVRVTMPHAGPRTIHSCSVLIFRNPCMHPGDCLKLRAVDKPELRHLVDCVVFASKGR 449
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLIP 817
+ +SG DLD Y + WD++LIP
Sbjct: 450 HAAPSLSSGGDLDE--YTIIWDKDLIP 474
>gi|393247227|gb|EJD54735.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 159/594 (26%), Positives = 247/594 (41%), Gaps = 99/594 (16%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
+ F+RV F+D Q + D+ + + V V IL DG L GR
Sbjct: 426 ENFIRVAFVDNDGQPFRYD----------PDVNTQAL-----VDAHVLPILRDGLTLGGR 470
Query: 470 RYSFLAFSSNQLRDH--SAW----FFSKVGET-SVLDIKNWMGEFTA--KNIAKYAARMG 520
+ FLA+S + L+ H W F +G T S I+ +G FT + A+ ARM
Sbjct: 471 LFKFLAYSQSGLKQHWEQVWLVHTFTDALGHTHSASTIRASLGTFTKDERCPARVGARMS 530
Query: 521 LCFSSTHATVEIPPTEVDHELPDIKRNGYV-FSDGIGKITPDLAMEVAQI---------- 569
L FS+T + + + LPDI +G+ +DG G I+ AM+ A I
Sbjct: 531 LAFSATVPSGSLSVARL-RNLPDIGGDGHTCMTDGAGLIS-RAAMDRAWIHFCAARGRRG 588
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC--HTSLEIC-SWT 626
+ P PS Q+R G KGV+ P G+R+ +R SM KF + + ++EIC ++T
Sbjct: 589 RTAELPPAPSVIQVRVKGAKGVLLVDPTL-QGLRIVVRPSMVKFSAGEQYDNIEICNAFT 647
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTAS-CAEQGN 685
FLNR +I +L V E F +Q + ++ L + + A +L ++ E N
Sbjct: 648 APSRAFLNRPLIMVLEARGVPKETFLWLQQQVVAETQLAVQSLLPAAALLESNGLGESLN 707
Query: 686 TAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCF--------------IQVSESSLENC 731
++ + P ++ L E + C F I V +S
Sbjct: 708 LPTLLRRIASRFANFPEVEQHLVAEDAFMTRCLDFAVNHVLRGLKFRGRIPVPDSWTLVG 767
Query: 732 FSKHGSRFAETK-----------KLQVINGFVVIAKNPCLRPGDVRILEAVDRP------ 774
H E + +L+ + G V + ++P PGDV ++ A+ P
Sbjct: 768 VPDHHGILEEGEVLVGIMDGDPLRLRYLKGGVTVTRSPVCHPGDVMVMRAIGPPRAGSAF 827
Query: 775 ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE-- 832
EL +C+VF KG R + G D DGD Y V + PP + + +P +
Sbjct: 828 ELLRPKNCIVFSTKGSRSPVSCLGGGDYDGDEYVVMKPAYMRPPEPAAPAMYKNSPRQDI 887
Query: 833 ---------AKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
K + +N+ L +I + AD S G +D C+ L+ L + AVD PK
Sbjct: 888 GRRYRKEDLLKVVPDFINNDQLPRIAATWLRIADISPQGVYDPRCLKLSALHSIAVDFPK 947
Query: 884 TG---KIVTMPSHLKPKKYPDFMEIEEY----------QTYKSNKILGRLYRQI 924
TG K +P P +PD+ E + Y S++ LG LYR I
Sbjct: 948 TGIPVKHADIPQ--APNMFPDWSMSELGAADHNKSFMDRIYPSDRALGHLYRAI 999
>gi|395334238|gb|EJF66614.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1233
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 161/606 (26%), Positives = 260/606 (42%), Gaps = 124/606 (20%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV+F DE N L Y +++ F + RVK +L +G + G
Sbjct: 464 DCFLRVSFQDE-------NRLQYRFN---REVDGRRF-----IDLRVKRVLLEGIRIAGA 508
Query: 470 RYSFLAFSSNQLRDHSAWFF---------SKVGETSVLDIKNWMGEF--------TAKNI 512
+ FLA+S + L++H+ WF V I +G+F +
Sbjct: 509 HFRFLAYSQSALKEHAVWFVKPFRYRDSHQNVHFVDATTIIQSLGQFHNLPFDPTLMRCP 568
Query: 513 AKYAARMGLCFSSTHATVEIPPTEVDHELPDIK-RNGY-VFSDGIGKITPDLAMEVAQIL 570
A+YAAR+ F++T A V + V + DIK RNG VF+DG+G ++P LA + + L
Sbjct: 569 ARYAARISQAFTATDAAVSM-AVGVVYMGRDIKGRNGKDVFTDGVGTLSPMLAESIWKAL 627
Query: 571 K------LDGSPPPSAYQIRYAGYKGVVAC-WPAKDDGIRMSLRGSMKKFKSCHTSLEIC 623
+ G P A+Q+R+ G KG+++ + D+ I LR SM KF +++
Sbjct: 628 QSRSGKTRKGKTYPRAFQVRFQGSKGMLSVDYKLTDNAI--MLRPSMIKFDDSKSAIVEV 685
Query: 624 SWTRFQPG--FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCA 681
+ +PG +LNR +I LL L V F +Q + V L+A
Sbjct: 686 ARAFDRPGAYYLNRPLIMLLEGLGVPYTTFKKLQDDAVRDAQ-----TSVTSLKLSAKLF 740
Query: 682 EQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFS--KHGSRF 739
E L F+ P + G+ LG L + + Q+ + ++ + KH +R
Sbjct: 741 EDHG-----LGVSFR--IAPVMLGLHKLGLGPLDDDIFWRQMMDFAVNHVLRELKHRARI 793
Query: 740 -------------------------------AETKKLQVINGFVVIAKNPCLRPGDVRIL 768
+ K L + G V++++P + PGDV+I
Sbjct: 794 PVPGTDSWTLVGVADIHRELKEGEIFVCVDSPKEKGLIFLEGPCVVSRSPTIHPGDVQIA 853
Query: 769 EAVDRP------ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
A+ RP ++ L + +VF G RP + G DLDGD Y VT +L+P K++
Sbjct: 854 TAIGRPRPGSHYDVESLRNTVVFSTTGSRPLPSCLGGGDLDGDEYNVTTRPDLMP--KRT 911
Query: 823 CPPMECTPAEAKPLTCH--------------VNHQNLGQICNAHVVHADRSE--YGAFDE 866
P PA K + H ++ LG I ++ AD++ G +
Sbjct: 912 YDPASYEPAPRK-MVDHESTMDDVAEFVAEFISSDTLGIIATNWLITADQTNDTDGILNP 970
Query: 867 NCILLAKLAATAVDSPKTGKIVTMPSHLKP--KKYPDFMEIEEYQT------YKSNKILG 918
+C+ LA+L + AVD KTG+ V + +P + PD+ E + Y+S +G
Sbjct: 971 DCLRLAELHSLAVDYAKTGQPVPIEQIPRPPLRIKPDWNAPETHSGKNSLSFYRSMTAVG 1030
Query: 919 RLYRQI 924
+L+R I
Sbjct: 1031 KLFRAI 1036
>gi|400596583|gb|EJP64354.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 527
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 182/398 (45%), Gaps = 56/398 (14%)
Query: 718 QCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
Q F+Q+S+ N K +I G I +NP L GD+R++EAVD P L
Sbjct: 45 QIFLQMSDRKYGN-------------KTTIIQGVCFIGRNPSLHAGDIRVVEAVDTPCLR 91
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL- 836
HL D +VFP KGDR + SG DLDGD Y+V WD L+P S PPM TP + L
Sbjct: 92 HLKDVVVFPSKGDRSLPSILSGGDLDGDEYFVIWDSTLVPKIWNS-PPMHSTPVTPQDLE 150
Query: 837 ------------TCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKT 884
++ + LG + AH+ HAD G C+ LAKL + AVD KT
Sbjct: 151 RGVEVDDLRNFAVKYMKNDCLGFVAVAHLAHAD--ALGLNHPICLQLAKLHSQAVDYLKT 208
Query: 885 GKIVTM-PSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
G + +P K+P FM+ TY S+K LG+LY ++ +EN D P
Sbjct: 209 GVPAEWNRARYQPSKWPHFMQ-RNSCTYPSHKALGKLYNRVA---EENF------DYVP- 257
Query: 944 DIHYDTDLEVPGSVDFT----ADARNQKCSYDGQLNGLLGQYNVNRK-EFRHIWSMPKYN 998
+ D + DFT A ARN K YD + LL Q+ V + E W+M K
Sbjct: 258 SCEDEFDSRITQRFDFTDEILASARNLKQQYDVAVRRLLKQFRVATEFELYSGWAMSKPA 317
Query: 999 SRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHR-- 1056
+LQE L + ++ FR E + ++ K E+ +A Y+VT
Sbjct: 318 VGSDYKLQEDLGQQFDTVKQRFR---EMCIQEAGIAGGSK---LEELVAAIYKVTEDEAK 371
Query: 1057 --EWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKI 1092
++ + S +++ L+SF WI + L +I +
Sbjct: 372 DFLAEAEAEGEALEYSPKAMPLISFPWIFHWVLVKIAM 409
>gi|409044334|gb|EKM53816.1| hypothetical protein PHACADRAFT_125775, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 1091
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 136/463 (29%), Positives = 200/463 (43%), Gaps = 40/463 (8%)
Query: 463 GFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA-KNIAKYAARMGL 521
G L G +Y F S++QLR S + + + + +G+F + +K A R+GL
Sbjct: 92 GLFLNGTQYRFYGHSNSQLRSRSCFLRQAENDEELDALIYRLGDFLKITSASKRAKRIGL 151
Query: 522 CFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL--DGSP-PP 578
FS + P ++ DI NG FSDG G I+ A ++++ ++ G P P
Sbjct: 152 LFSEAKIDWNLQPRWT-KDIDDIVVNGETFSDGCGLISVKFAKQLSKHKRILYHGRPYTP 210
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH--TSLEICSWTRFQPGFLNRQ 636
+ YQIRY GYKGV+A P + + R S KKF + T + T F LN
Sbjct: 211 TVYQIRYRGYKGVLAIDP-RLTTDHVHFRKSQKKFTATQNDTFSVVDHSTPFAFARLNND 269
Query: 637 IITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGF- 695
I+ LL++L +S + F Q L + AF++L A A + A +L G
Sbjct: 270 IVVLLASLGISSDAFLAKQRGYHEWLQKASDGWEAAFDLLCA--ANRYAMAERLLLEGID 327
Query: 696 -KPQTEPHLQGMLTYELGELKE-----CQCFIQVSESSLENCFSKHGSRFAETKKLQVI- 748
KP + ++ + EL +++ + + S C R E +I
Sbjct: 328 SKPVRQ-EIRALQNSELASIRKNDRLRVRTLVPKSRFLFGVCDPYSVLREGEVHVRIMIP 386
Query: 749 --------NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGS 800
N V++ +NPCL PGD L AV P L HL DCLVF +G R + +SG
Sbjct: 387 RKGITTLTNVDVLVVRNPCLYPGDCLKLRAVHHPALDHLIDCLVFASRGRRAAPSMSSGG 446
Query: 801 DLDGDLYYVTWDENLIPPSKKS-----CPPMECTPAEAKP-LTCHV---NHQNLGQICNA 851
DLDGD + V WD +L+P PP A+ L H N +G++
Sbjct: 447 DLDGDKFTVIWDPDLVPRKVAQSYDYPAPPERLNAKIARQDLAKHFAAYNSITMGRVAAL 506
Query: 852 HVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
H S GA C L L + AVD G + +P L
Sbjct: 507 HQKWIRLSPAGAMSAECQELNALYSLAVD----GGSIKIPERL 545
>gi|443895352|dbj|GAC72698.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1496
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 181/649 (27%), Positives = 279/649 (42%), Gaps = 106/649 (16%)
Query: 376 LNEGPKNIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRVTFMDE--- 420
L+ P DD +++ + +TPT+ V++R F RVTF +E
Sbjct: 372 LDPTPSPDDDYLSKTFSIDVTPTRVLLSGPHTHVSNRVIRAYSDHWHHFARVTFSNEDRG 431
Query: 421 GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQ 480
G T+ AN + S + Q RV IL G N+ GR + LA+SS+
Sbjct: 432 GATTIKANY---------GFVESERYIQS-----RVLKILQRGINVAGRHWEMLAWSSSS 477
Query: 481 LRDHSAWF---FSKVGETSVLD--IKNWMGEFT--AKNIAKYAARMGLCFSSTHATVEIP 533
+ H+ WF F T V I+ +G+FT A+ A Y AR+ FS+T TVE+
Sbjct: 478 MSAHTVWFVTPFRDKDGTHVHAEVIRRELGDFTDVARYPAMYGARLSQAFSATARTVEVD 537
Query: 534 PTEVDHELPDIKR--NGYVFSDGIGKITPDLAMEVAQ--ILKLDGSP---------PPSA 580
+ + H +PDI+ ++DG+G+I+P+L EV + + G P PSA
Sbjct: 538 SSLILH-MPDIETPDRKMAYTDGVGQISPELMAEVWEKYVTSALGEPRKRKFFKAAAPSA 596
Query: 581 YQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEIC-SWTRFQPGFLNRQIIT 639
QIR G+KG + P + G +++LR SM KF S H LE+ S R LNR +I
Sbjct: 597 IQIRIGGHKGCLTVNP-RLQGKQLALRPSMSKFVSPHQDLEVANSSARCLSAKLNRPLIN 655
Query: 640 LLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFK--- 696
L V +Q + + D ++ +A G I+ K
Sbjct: 656 ALDDRGVPATALLDIQKEAIAHIGRARTHFDETAKLCSAYSFGTGCDLHILFQKLHKHGM 715
Query: 697 PQTEPH--------LQGMLTYELGELKECQCFIQVSESSL-----ENCFSKHGSRFAETK 743
T H + ++ LG++K + I V +L E F K G FA+ +
Sbjct: 716 GATSIHSDSFFLVLAKAVIAAALGDMKR-KARIPVRGVTLIGVADEFAFLKEGEVFAQVE 774
Query: 744 KL-------QVINGFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQ-KGDRP 792
+ +V+ G +I ++P + PGD+ +++ V P H L + +VF P
Sbjct: 775 HVDLGQVRRRVLVGTKLIGRSPTVDPGDIAMVKCVRPPPGHPLLQLRNVVVFNTCTRQEP 834
Query: 793 HTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC--HVNHQNL----- 845
G DLDGDLY + DE L P+ + P A+ +P+ + N +L
Sbjct: 835 LPRRLGGGDLDGDLYTIYEDERLFLPTPQ---PGTTFHAKTRPMELDRYCNSTDLANFFA 891
Query: 846 --------GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG---KIVTMPSHL 894
G + + H+ AD S+ G+ D C LA L + A D KTG K +P
Sbjct: 892 DFMLNDFIGLVSHMHLRIADASKAGSLDGRCKQLAMLHSLATDFRKTGVAVKRTQLPRMD 951
Query: 895 KPKKYPDFMEIEEYQ----TYKSNKILGRLYRQIKGAYDENISVSSEVD 939
+P PDF+ E + TY S ++LG LYR + + S+ D
Sbjct: 952 EP-IIPDFLAQGEPRQGGLTYPSTRVLGYLYRAVSWNQTDTPSLDKNTD 999
>gi|401885409|gb|EJT49528.1| hypothetical protein A1Q1_01432 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1000
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 136/484 (28%), Positives = 209/484 (43%), Gaps = 91/484 (18%)
Query: 359 AYEKLKDVQECLIKNPKLNEGPKNID-DIAEVRRLVITPTKAYW-----------FLESK 406
A E++++V ++K L G + I +R + +TPT+
Sbjct: 349 AEERVRNVY-TVVKPAALRRGEFPVSRHIVMIRTVTVTPTRVLVGPPQPETSNSVTRRYS 407
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D +RV F DEG + +N + + P ++ + G+ RV+ L G +
Sbjct: 408 DKLDAIIRVHFTDEG-ERLN---VQKFTKP------ADDACPEKGLMARVRRALQYGIEV 457
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD---IKNWMGEFTAKNIAKYAARMGLCF 523
G RY +A S +Q +DH+ WF + +V+D + WMG+ + +AK+AAR+GL
Sbjct: 458 AGCRYYPVASSGSQQKDHNMWFI----DHTVIDRPELSRWMGQVKEQVVAKHAARLGLVT 513
Query: 524 SSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL--KLDGSPPPSAY 581
S +L D+ RNG+ F+DG G D+ + A+ + K PSA
Sbjct: 514 VS--------------DLADVFRNGHCFTDGCGVAGIDVMRQAARSMNNKRKTGEAPSAL 559
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
Q R G KGV+A WP + +R S KF+S L + ++Q FLNRQ I ++
Sbjct: 560 QFRLGGAKGVLAYWPGMAGNDEILMRPSQTKFESRLKELNVVRIAKYQSAFLNRQFINIM 619
Query: 642 STLNVSDEIF--WTVQASMA-------------SKLNLMLVASDVAFEVLT--------- 677
S V D +F V+A+ A +K +L+L F ++
Sbjct: 620 SACGVPDALFEQLFVEATQAIEGLPERAVLRDLTKDDLVLFQQYTEFPMVQVIDAGFARN 679
Query: 678 ------ASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENC 731
A E + A K +L G+ E G LKE + F+Q
Sbjct: 680 PMIQDLARLVEARALQDLKWRARVKLDMGVYLIGVAD-ETGLLKEGEVFVQY-------- 730
Query: 732 FSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
+ E + V+ G VV+ + P L PGDVR AVD P+L HL + +VF KG R
Sbjct: 731 ------QVTENDEPVVVTGAVVVCRAPALHPGDVRTARAVDHPQLRHLKNVVVFSIKGAR 784
Query: 792 PHTN 795
P N
Sbjct: 785 PLPN 788
>gi|409051493|gb|EKM60969.1| hypothetical protein PHACADRAFT_168316 [Phanerochaete carnosa
HHB-10118-sp]
Length = 968
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 163/639 (25%), Positives = 291/639 (45%), Gaps = 99/639 (15%)
Query: 270 VQEDCLSQPVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQ---L 326
VQ D PV RE F V++ + + +G+ + + F V A++ +++ + L
Sbjct: 302 VQVDDYLYPVEYREL--FAPDVQESYKA--WVKGLPWRVAFQVEALVRSILIDMKEALGL 357
Query: 327 SDSFFDLLRCQPREVIVTALKH------IYSYKRPVFDAYEKLKDV------QECLIKNP 374
+LR + L+H ++ Y E + D+ + +K
Sbjct: 358 RAKISRMLRAKGEAHAALFLRHFATQAKMFGYTDDSHSPTESITDLFSRCEREYAPVKRK 417
Query: 375 KLNEGPKNIDDIAEVRRLVITPT----KAYWFLESKDVA-------DRFLRVTFMDEGLQ 423
+L GP N+D + + +TPT + + S V D F+RV F+DE
Sbjct: 418 RLR-GPPNLDTF-DCLHVTVTPTTHRPEGPYPERSNRVMRTYSNNHDCFVRVNFVDETDL 475
Query: 424 TMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRD 483
+ +++ +F + +RV +L++G + GR + FLA+S + L++
Sbjct: 476 QFRFD----------REVDGRAF-----IKRRVGEVLANGIVVAGRYFEFLAYSQSALKE 520
Query: 484 HSAWFFSK--VGETSVLD---IKNWMGEFTAKN-----IAKYAARMGLCFSSTHATVEIP 533
H+ WF + + + +V++ I +G+FT A+Y AR+ F++T ++V +
Sbjct: 521 HAVWFVKEFLLPDGTVVNACTIIAGLGDFTRDRQLIYCPARYGARISQAFTATDSSVTVE 580
Query: 534 PTEVDHELPDIK--RNGYVFSDGIGKITPDLAMEVAQIL--KLDGS---PPPSAYQIRYA 586
EV E+PDI+ + F+DG+G ++ LA E+ ++L + GS P A QIR+
Sbjct: 581 AEEVI-EVPDIEDPTGTWCFTDGVGTMSVRLAREIWKVLAARRRGSRWQTYPRALQIRFQ 639
Query: 587 GYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTS-LEIC-SWTRFQPGFLNRQIITLLSTL 644
G KG+++ G + LR SM KF++ +++ +E+ ++ R P +LNR +I +L L
Sbjct: 640 GSKGMLSV-DHTLSGRAICLRPSMIKFEALNSNQIEVARAFNRPGPFYLNRPLIMILEHL 698
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLS---AGFKPQTE 700
V E+F +Q + + + + A +L T ++ LS P TE
Sbjct: 699 GVQHEVFQDLQDAAVMDAQQSVESLEKAARLLETFGLGASFRLTSVFLSLHKLAVGPLTE 758
Query: 701 PH-----LQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKL---------- 745
+ + + + L ELK + +L HG + E ++
Sbjct: 759 DNFWRKMMDFAVNHVLRELKHHARIPVPNAWNLVGVADVHG--YLEEHEVFGCIYPTDGT 816
Query: 746 --QVINGFVVIAKNPCLRPGDVRILEAVDRP------ELHHLCDCLVFPQKGDRPHTNEA 797
++G V++ ++P + PGDV++++ + RP E L + LVF KG RP +
Sbjct: 817 GPIYLDGRVLVTRSPTIHPGDVQVVQGIGRPPPGSPFERESLRNTLVFSVKGTRPLPSYL 876
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
G DLDGD Y VT + L+PP ++ P TPAE K L
Sbjct: 877 GGGDLDGDEYRVTMLDPLLPP--RTYLPASYTPAEKKLL 913
>gi|440493516|gb|ELQ75976.1| RNA-directed RNA polymerase QDE-1, partial [Trachipleistophora
hominis]
Length = 714
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 112/188 (59%), Gaps = 14/188 (7%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
V+ G ++AKNPCL PGD+R + V + EL H + LVF +KG RP N SGSDLDGDL
Sbjct: 256 VVVGNAIVAKNPCLHPGDIRKVHCVYKKELLHYKNVLVFSRKGTRPTFNMCSGSDLDGDL 315
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKP----------LTCHVNHQNLGQICNAHVVHA 856
Y+++WD+ LIP ++ + + +K T LG+I NAH+V++
Sbjct: 316 YFISWDKRLIPRNEHFPQSYQSSSYLSKEHIVTQDMVNFFTRFAKEDELGKISNAHLVYS 375
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKI 916
D +G D + LA L + VD PKTG I +P +L+P+ YPDFM E ++YKS ++
Sbjct: 376 D--IHGITDPQALKLAYLFSMGVDFPKTGYIARLPQNLEPEVYPDFM--ERGRSYKSGRV 431
Query: 917 LGRLYRQI 924
+G LYR++
Sbjct: 432 MGVLYRRV 439
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 562 LAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLE 621
+A +A+ L+L S P+A+QIR+AGYKGVV D I LR SM+KF S +T LE
Sbjct: 1 VAHMIAKKLRL--SFTPTAFQIRFAGYKGVVVRAHIPHDLI---LRKSMRKFNSTYTILE 55
Query: 622 ICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQ 655
+ ++++ +LNRQII +L L + F ++Q
Sbjct: 56 VVNYSQPIECYLNRQIIMILEGLGIPKHNFISLQ 89
>gi|449550168|gb|EMD41133.1| hypothetical protein CERSUDRAFT_111700, partial [Ceriporiopsis
subvermispora B]
Length = 595
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 190/419 (45%), Gaps = 40/419 (9%)
Query: 450 TGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE--- 506
T + + +K + +G + RY+F F+ N +++ F + +V +K G+
Sbjct: 55 TEIRRILKKWVHEGVTVASARYAFFGFTENHVKEGRVICFREDESWTVRHVKEQFGDLDE 114
Query: 507 -FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKR-NGYVFSDGIGKITPDLAM 564
+ KYAAR+GL FSST ++++ P E E+PD++ +G + +DG G I A
Sbjct: 115 VYQKHGYGKYAARLGLSFSSTVQSLDVAPEEA-LEVPDLRAPDGSLHTDGCGMICDSFAA 173
Query: 565 EVAQILKLDGSPPPSAYQIRYAGYKGVVACWP--------AKDDG------IRMSLRGSM 610
E+ +L + +Q+R G KG++ +P AK G I+M+ R SM
Sbjct: 174 EICHAHELPAD--TTVFQVRRGGIKGLLVRYPDDKFAELCAKHRGIPTPPSIKMAYRPSM 231
Query: 611 KKFKSCHTSLEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS 669
K+ T+LE+ +R LN Q I +L TL ++ E F + + +
Sbjct: 232 LKYSGGPTALELNDCSRCPTSARLNAQFIIMLLTLGINIETFEKMLKEHLDIIGCITHDR 291
Query: 670 DVAFEVLT----ASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSE 725
DVA L AS + L + +EP+++ L + L+ + +++
Sbjct: 292 DVALRYLKGELDASDHDTFGQDVYALLLAYHDLSEPYVEWKLK-QFQALQYKSLYKKLNL 350
Query: 726 SSLENCF-----SKHGSRFAET------KKLQVINGFVVIAKNPCLRPGDVRILEAVDRP 774
E+C+ + G + + V+ G V++A+NP PGD R L AV P
Sbjct: 351 RVEESCYVYGVVDEDGILEGDEVFINLPGRTGVVLGNVLVARNPSYSPGDFRKLRAVHDP 410
Query: 775 ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA 833
L H C+VF +K + + DLDGD Y+VTWD LI PS + P PA A
Sbjct: 411 RLKHHKHCIVFSRKASHSIPDSMASGDLDGDEYFVTWDPTLI-PSHMATPHQRALPASA 468
>gi|400596582|gb|EJP64353.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 590
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 133/273 (48%), Gaps = 19/273 (6%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
++ DRFLRV F+ E I KD +N V+KR+ L G +
Sbjct: 329 NLHDRFLRVQFLSETESNR-----------IAKDRYNND-----DVWKRLLRALHKGIRI 372
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLCFSS 525
R Y FLAF ++QLR+ S FF S DI+ W+G F +N+AK+ AR+G CFS+
Sbjct: 373 GERTYEFLAFGNSQLREGSVTFFCPTAHVSCDDIRKWLGNFDHIRNVAKFGARIGQCFST 432
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRY 585
T + + H + DI+ G F+DG+G I+ LA V L+LD PSA+Q R
Sbjct: 433 TREVRGVRVPTIRH-IDDIEAKGECFTDGVGIISALLAQLVVDELELDIVGNPSAFQFRM 491
Query: 586 AGYKGVVACWPAK-DDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
G KGV+A WP + + + LR S KF + +LEI + LNRQIIT+L L
Sbjct: 492 GGAKGVLAVWPREYAKHMEVCLRKSQIKFSTEANTLEIIKCAKTSTATLNRQIITILEHL 551
Query: 645 NVSDEIFWTVQASMASKLNLMLVASDVAFEVLT 677
V F + + + A ++LT
Sbjct: 552 GVPLGAFMALLNKQIQHYEEAMTSRVAAIDLLT 584
>gi|170577358|ref|XP_001893975.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158599674|gb|EDP37189.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 261
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 128/240 (53%), Gaps = 39/240 (16%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G+L+ Q F+Q + + S ++F ++ G V++ KNPC+ GDVR+ E
Sbjct: 33 ETGQLQWGQIFVQCTRNIWLKTPSPSAAKF-------ILKGKVMLTKNPCIVAGDVRVFE 85
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT 829
AVD PELHHL D +VFPQ G RPH +E +GSDLDGD Y V WD+ LI + + PP++ T
Sbjct: 86 AVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELI--FEHNEPPLDFT 143
Query: 830 PAEA---------------KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKL 874
+ + K ++ ++G I NA +V+AD YG E CI +AK
Sbjct: 144 KSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSISNAFLVNADL--YGITSEVCINIAKK 201
Query: 875 AATAVDSPKTG-------------KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLY 921
+ AVD PKTG K M + +++PDFM +Y S++++G+LY
Sbjct: 202 HSKAVDFPKTGDAPAPLTRQWTHDKNGNMLPPERAERWPDFMCKNHEPSYISSRLVGQLY 261
>gi|390596235|gb|EIN05637.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1230
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 163/606 (26%), Positives = 260/606 (42%), Gaps = 113/606 (18%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
F+RV F DE + L Y +D+ + F V RV ++ G + GR +
Sbjct: 438 FVRVQFCDE-------DYLQYRFD---RDLDGDGF-----VRDRVGGVMRTGIRIGGRAF 482
Query: 472 SFLAFSSNQLRDHSAWF---FSKVG-ETSVLDIKNWMGEFTA--KNIAKYAARMGLCFSS 525
FLA+S + L+DH+ WF F+ G I+ +G FT + + Y ARM F++
Sbjct: 483 EFLAYSQSALKDHAVWFVRPFNLDGHRVDAEAIRQSLGTFTKVIRFPSLYGARMSQAFTA 542
Query: 526 THATVEIPPTEV----DHELPDIKRNGYVFSDG-------------------IGKITPDL 562
T ++ + P E+ D E+ D F+DG +G I+ L
Sbjct: 543 TDPSITVTPNEIKRIPDIEIVDSTGQKRQFTDGSLPSTLSYADPIDYFRLAGVGTISLAL 602
Query: 563 AMEVAQIL------KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC 616
A ++A L K P A+QIR+AG KG+V+ ++G + LR SM KF+S
Sbjct: 603 AKDIASALLAVRKRKRGKYFKPRAFQIRFAGSKGMVSV-DINEEGRVLCLRPSMIKFESP 661
Query: 617 HTSLEICSWTRF-QPG--FLNRQIITLLSTLNVSDEIFWTVQASMA----------SKLN 663
SL+I F +PG LNR +I +L L F +Q + K
Sbjct: 662 -DSLDIEIAKTFDRPGKFLLNRPLIMILEGLGAPAAAFEALQDAAVEEAEAARESLQKSA 720
Query: 664 LMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTE----PHLQGMLTYE----LGELK 715
ML + S A+ + + S+ + T+ + M+ + L ELK
Sbjct: 721 RMLEVHGLGGAYRLPSVADVPHRLGLPRSSEARGTTQCIDDEFMDRMVAFAVNHVLRELK 780
Query: 716 ECQCFIQVSES-SLENCFSKHG-----SRFAETKKLQ-----VINGFVVIAKNPCLRPGD 764
I V +S +L HG FA + Q + G V++ ++P PGD
Sbjct: 781 H-HARIPVPDSWTLVGIADIHGVLEEGEVFACVQPPQGGQRVYLEGNVMVTRSPVAHPGD 839
Query: 765 VRILEAVDRP------ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
V++ A+ RP + + + ++F KG RP + G DLDGD++ V+ ++ P
Sbjct: 840 VQMARAIGRPPPGSAYDTEPIPNTVIFSVKGSRPLPSALGGGDLDGDVFNVSQFADIFP- 898
Query: 819 SKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAHVVHADRSEYGAFD 865
+ PP A K L +N+ LG I ++ AD+S G F
Sbjct: 899 -RHLHPPASYEAAVRKELDRDSTIEDVMDFVVDFINNDRLGVIAINWLIIADQSPEGVFC 957
Query: 866 ENCILLAKLAATAVDSPKTGKIVTM---PSHLKPKK----YPDFMEIEEYQTYKSNKILG 918
CI L++L + AVD K+G+ V + P L + P+ + E+ Y+S K +G
Sbjct: 958 TECIKLSQLHSDAVDFQKSGRSVPLGDVPRLLMRARPDWNAPETINPEDGAYYESTKAIG 1017
Query: 919 RLYRQI 924
+L+R+I
Sbjct: 1018 KLFRRI 1023
>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
Length = 1676
Score = 139 bits (350), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/391 (29%), Positives = 178/391 (45%), Gaps = 36/391 (9%)
Query: 540 ELPDIKRNGYVFSDGIGKITPDLAMEVAQ---ILKLDGSPPPSAYQIRYAGYKGVVACWP 596
++PDI+ Y+F+DG G + P LA E+A+ I+ D PS QIRY GYKGVV P
Sbjct: 164 DIPDIETADYIFTDGCGLVAPKLAQELARRVGIVFRDRRYTPSVLQIRYRGYKGVVTVDP 223
Query: 597 --AKDDGIRMSLRGSMKKFKSC--HTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFW 652
A D + +R SMKKF H+ + + G+LN ++I LL L V +
Sbjct: 224 TMAADKKYLLRMRKSMKKFSGGDDHSFSVVEHSKPYTYGYLNDEVIILLDALGVDRAVIK 283
Query: 653 TVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS-AGFKPQTEPHLQGMLTYEL 711
Q L AF L Q +M S +P+ + ++ L
Sbjct: 284 RKQEEHFRFLADATQDPRSAFRFLCYVNMPQLAERVLMDSLESVRPRIQALVKNEYAKML 343
Query: 712 GELKECQCFIQVSESSL--ENCFSKHGSRFAETKKLQVINGF----------VVIAKNPC 759
+ E +C I + +S L C + + E ++G V++ +NPC
Sbjct: 344 NKRDEQKCRILLPKSRLLFGVCDAWGVLKEGECAVKITMDGDGQPAALKGCDVLVTRNPC 403
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP- 818
L PGD++ + V++ EL HL DC+VF +G RP + SG DLDGD ++V WD +++P
Sbjct: 404 LHPGDMQKFKVVEKRELAHLVDCIVFSSQGRRPAADLMSGGDLDGDTFFVCWDSDIVPAT 463
Query: 819 -SKKSCPPMECTPAEAKPLT--------CHVNHQNLGQICNAHVVHADRSEYGAFDENCI 869
S+ + P +P+T N+ +LG++ N ++ A GA E C
Sbjct: 464 LSQPAQYPGAKERLRFEPITDDDRLEYFARYNNASLGRVKNLYLDWA--RARGAMAEQCQ 521
Query: 870 LLAKLAATAVDSPKTGKIVTMPSHLKPKKYP 900
L +L + VD G + +P L+ P
Sbjct: 522 ELNRLFSQCVD----GNFIRIPQKLEKAPPP 548
>gi|393244711|gb|EJD52223.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1372
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 156/590 (26%), Positives = 266/590 (45%), Gaps = 93/590 (15%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D F+RV F DE + +++ +F V RV +L G L
Sbjct: 603 DHQDCFIRVHFTDEEQYQFRWD----------REVDGVAF-----VRGRVGGVLKQGLEL 647
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFS----KVGETSVLD-IKNWMGEFTA--KNIAKYAARM 519
GR + FLA+S L++H+ WF + + G++ + I++ +G+F+ + + Y AR+
Sbjct: 648 AGRYFEFLAYSFGALKEHTVWFVTPFIDQAGKSVTAESIRDSLGDFSKVIYHPSLYGARL 707
Query: 520 GLCFSSTHATVEIPPTEVDHELPDI--KRNGYVFSDGIGKITPDLAMEVAQIL-----KL 572
FS+T+ +V + +EV+ ++PDI V SDG + LA ++ +L +
Sbjct: 708 SQAFSATYPSVRVEASEVE-QIPDIYDPSGENVMSDGCAPCSTQLAKDIDDVLMEGKSRY 766
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEICSWTRFQPG 631
+ +P P AYQIR G KG++ P G ++ LR SM KF + + +E+ + R
Sbjct: 767 EYNPVPKAYQIRIGGSKGMIYVDPTL-PGRKLLLRPSMNKFDAPDSLDIEVSNIPRASHM 825
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQA-SMASKLNLMLVASDVAFEVLTASCAEQGNTAAIM 690
+LNR ++ LL L V F +Q +MA+ L+ A + ++ + G +
Sbjct: 826 YLNRPLVMLLEDLGVRLSTFKQLQEDTMAADLD---AARHIGRFIIGMNQIGLGKRFYLS 882
Query: 691 LSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSK---------------- 734
G E L+ + G L + + + +S+L + F K
Sbjct: 883 YVLGELADMEFGLRDDCQGDFGSLLDDYWYHGIVKSTLWDQFRKIKYQARIRVPDSWTLV 942
Query: 735 ----------HGSRFAETKKLQVINGF-----VVIAKNPCLRPGDVRILEAVDRP----- 774
G A + NG+ V+I ++P + PGDV+++EAV P
Sbjct: 943 GVLDEHQILQTGQIMAYVQNEDYPNGYFLKGPVLICRSPVVHPGDVQMVEAVVPPDGSIL 1002
Query: 775 ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVT------WDENLIP-----PSKKSC 823
++ L +C++F G R + G DLDGDL++V+ + +P P ++
Sbjct: 1003 DVERLPNCVIFSALGARSIPSCLGGGDLDGDLFHVSEYPYFRIKQPYLPAAYPTPERRKL 1062
Query: 824 PPMECTPAEAKPLTC-HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
E T + ++N LG + H+V AD+ G C+ LA+L +TAVD
Sbjct: 1063 KDREATIDDVADFVVEYINSDVLGLVATTHLVIADQHPDGVRAHKCMQLAELHSTAVDYA 1122
Query: 883 KTGKIVT---MPSHLKPKKYPDFM--EIEEYQT---YKSNKILGRLYRQI 924
KTG V +P + P K PD+ E+++ + Y+S + LG LYR +
Sbjct: 1123 KTGIPVPRMRIPHYEFPAK-PDWKADEVDDPTSADYYESQRALGHLYRGV 1171
>gi|405974296|gb|EKC38952.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 520
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 154/299 (51%), Gaps = 26/299 (8%)
Query: 336 CQPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVIT 395
C+ +V T H+ +P F E+++D + N+ PKN VRR V+T
Sbjct: 207 CKYSDVFTTLADHLAG--KPFFHLKEEMQDAIKLTESYGFDNKVPKNY---TMVRRAVLT 261
Query: 396 PTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKD-----ITSNSFSQKT 450
P++ L SK+ + + L+ NA+ Y++ + +D I+ +
Sbjct: 262 PSRL--ILLSKEPV-------YFNRILRQYNAD---YFIRLVYRDEDFEKISGMKYRGPQ 309
Query: 451 GVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAK 510
+ + +K +GF + R Y FL S++QLR+HS WFFS + I+ G+ +
Sbjct: 310 HLLEDMKQHFINGFTIYDRHYEFLGCSNSQLREHSFWFFSSYDGITAEFIRQSSGDLAKE 369
Query: 511 N-IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQI 569
+A Y +R GLCFSS+ T+ I E D+ RNGY F+DGIGKI+ LA +VA+
Sbjct: 370 RCVASYVSRFGLCFSSSWNTLTIEEHEEVRFEKDVTRNGYCFTDGIGKISKRLAAKVAK- 428
Query: 570 LKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR-MSLRGSMKKFKSCHTSLEICSWTR 627
+D + PSA+QIRY G KGV+A P+ + + +R SMKKF+S SLE+ +R
Sbjct: 429 -SMDLNIVPSAFQIRYGGCKGVIAIDPSLGENREIIVIRESMKKFESNSKSLEVLQVSR 486
>gi|241083173|ref|XP_002409051.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492624|gb|EEC02265.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 597
Score = 137 bits (345), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 166/342 (48%), Gaps = 58/342 (16%)
Query: 389 VRRLVITPTKAYWF----LESKDVADRF-----LRVTFMDEGLQTMNANVLSYYVAPIVK 439
+RRL +TP++ ++ V RF +RVTF D+ LQ ++ +++ + +
Sbjct: 281 IRRLFVTPSRVFFLPPLLFRENRVLRRFNPEYAMRVTFRDDNLQQLSRSLMFHRRRDEMV 340
Query: 440 DITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD 499
D F L +G + RR+ FLA S +QLRDH AW +++ + +D
Sbjct: 341 DAIVGKF-------------LREGVAVGNRRFKFLATSCSQLRDHGAWLYAEDSLGNTVD 387
Query: 500 -IKNWMGEFTA-KNIAKYAARMGLCFSSTHATVEIP-PTEVDHELPDI-------KRNGY 549
I+ WMG+F+ NIAK ARMG CFSST T+++P ++ PDI +
Sbjct: 388 LIRTWMGDFSGIPNIAKKMARMGQCFSSTMETLKVPLKGDIVQMTPDIVGGRHPVSAKEF 447
Query: 550 VFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGS 609
FSDGIG I+ L ME +IRYAGYKG++ P G ++ LR S
Sbjct: 448 SFSDGIGMISASL-ME----------------KIRYAGYKGMLCLNPCL-QGDKLVLRPS 489
Query: 610 MKKFK-SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVA 668
M+KF S +LE+ + + LNR +IT+L L V +F +Q S + LV
Sbjct: 490 MRKFDCSSSDNLELVKVSAPRLVCLNRPLITILEQLGVPSRVFLCLQQSTVLQCTDALVC 549
Query: 669 SDVAFEVLTASCAEQGNTA---AIMLSAGFKPQTEPHLQGML 707
A +VL+ G T+ A ++ GF +P ++ +L
Sbjct: 550 ETTALQVLSGF----GGTSLPFAELVRGGFCLTRDPFVRSLL 587
>gi|313244084|emb|CBY14941.1| unnamed protein product [Oikopleura dioica]
Length = 784
Score = 136 bits (342), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 136/489 (27%), Positives = 204/489 (41%), Gaps = 93/489 (19%)
Query: 502 NWMGEFTA-KNIAKYAARMGLCFSSTHATVEIPPTEVDHEL-----PDIKRNGYVFSDGI 555
N+ G F K ++KYAAR+GL S T AT+ +P + E P Y F+DG
Sbjct: 276 NYFGNFNKIKIVSKYAARIGLLMSPTAATIFVPDKKWAREKDIVGGPPKNPEKYEFTDGC 335
Query: 556 GKITPDLA------MEVAQILKLDGSP-PPSAYQIRYAGYKGVVACWPAKDDGIR--MSL 606
G++ +A + + + + G+ PS Q R G KG+ P DD + + +
Sbjct: 336 GRMCTRVAEMFRDKLNLKHLYRHQGAYCVPSVIQFRMMGCKGIFVHDPTLDDADKPWVMI 395
Query: 607 RGSMKKFK---------------SCHTSLEICS--WTR-FQPGFLNRQIITLLSTLNVSD 648
R S KF + ++ +CS ++R F G LN Q + LL L + D
Sbjct: 396 RDSQWKFDWNMNTVKHLERDKDGNPGRAMGVCSNGFSRPFSFGKLNEQFVVLLDALGLED 455
Query: 649 EIFWTVQASMASKLNLMLVASDVAFEVLTAS------------------CAEQGNTAAIM 690
F +Q +L + AFE+L++ E NT
Sbjct: 456 NTFLNIQKDHFERLKRCMDDRIAAFEILSSEKRMDEADLLDRTDEDSPYPPEVINTLKRF 515
Query: 691 LSAGF-----KP--QTEPHLQGMLTYE--------------LGELKECQCFIQVSESSLE 729
F KP + E +++ Y G+L++ +CF+Q+++ E
Sbjct: 516 RKPVFDLPSAKPDRREEKNIKNAAFYIPISKSRNVYGVADISGKLRKGECFVQITQYE-E 574
Query: 730 NCFSKHGSRFAETKKLQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
K G+ E + L + NG V++ K P PGD R+L+ PEL HLCD +VFP
Sbjct: 575 VVDKKRGTSRKERRMLPLGNGAKVLVNKCPTYHPGDFRVLQNTHVPELMHLCDVIVFPVY 634
Query: 789 GD-------RPHTNEASGSDLDGDLYYVTWDENLIPPSKKS---CPPMECTPAEAKPLTC 838
RPH +E SDLDGD Y+V+WDE LIP + CP +T
Sbjct: 635 DKVYNPDLKRPHPHEMHESDLDGDEYFVSWDERLIPEKLEKPFPCPDKTIGANIKDEITV 694
Query: 839 H-------VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
+ +G+I N + A + GA C LAKL +VD+ K G V +
Sbjct: 695 QDLIREFTASEHLVGRINNLFIDWAKLA--GASSNECRQLAKLFNQSVDTAKHGGKVEIS 752
Query: 892 SHLKPKKYP 900
HL + P
Sbjct: 753 KHLTRGRRP 761
>gi|154273921|ref|XP_001537812.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415420|gb|EDN10773.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 652
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 164/372 (44%), Gaps = 75/372 (20%)
Query: 738 RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
R +E K + +I G ++A+NP L PGD+R+++AV+ P LHHL D +V PQ GDR ++
Sbjct: 110 RHSEGKYV-IIEGVCILARNPSLHPGDIRVVKAVNAPSLHHLRDVVVLPQTGDRDISSMC 168
Query: 798 SGSDLDGDLYYVTWDENLIP------PSKKSCPPMECTPAE------AKPLTCHVNHQNL 845
SG DLDGD Y V WD++++P P + P E + K ++ + L
Sbjct: 169 SGGDLDGDDYVVIWDQDILPTDWFHNPMDYAAPKPEVLDRDVTVDDITKFYVNYMQNDRL 228
Query: 846 GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEI 905
QI AH+ AD E G +E C+ LA L + AVD K+G V + LKP+++P FME
Sbjct: 229 PQIALAHLALADYMEEGVKNEKCLQLAALHSAAVDYNKSGIPVKLTRDLKPRRWPHFME- 287
Query: 906 EEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARN 965
R+++ Y DF A N
Sbjct: 288 ----------------RKMRNKY----------------------------ADF---ATN 300
Query: 966 QKCSYDGQLNGLLGQYNVNRKEFRHIWS---MPKYNSRKQGELQERLKHSYSAFRKEFR- 1021
K YD + ++ Q+ + K +WS + K + E + S+ R++FR
Sbjct: 301 LKTQYDADMRRIMAQHEI--KTELEVWSTFVLSHSEMTKDYKFHEDIGRISSSLREKFRI 358
Query: 1022 QVFEKMNS-DFELSDNEKNVLYEQKASAW--YQVTYHREWVKKSLDLLEQGSARSVVLLS 1078
+EK+ +FE +Y+ + W +H +V S R + L+S
Sbjct: 359 MCYEKVGGKEFEHLAPLAVAMYKVTSEQWEIAVAAHHDVFVDNS-----HFQERKLPLIS 413
Query: 1079 FAWIANDYLARI 1090
F WI L RI
Sbjct: 414 FPWILQPILGRI 425
>gi|405974297|gb|EKC38953.1| Translocon-associated protein subunit beta [Crassostrea gigas]
Length = 1284
Score = 133 bits (334), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 141/264 (53%), Gaps = 36/264 (13%)
Query: 381 KNIDDI----AEVRRLVITPTKAYWFLESKDVADR---------FLRVTFMDEGLQTMNA 427
K DD+ + +RR+V+TPTK ++ + V +R F+R+ F DE + ++A
Sbjct: 449 KEADDMPPGYSNIRRIVLTPTKHVFYPKEPIVQNRIIRQYAEEYFIRIVFRDEDYEKVSA 508
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
+AP NS V +K L GF + RRY FL S++QLR+H W
Sbjct: 509 ------IAP-------NSLD---SVIDAMKQFLCAGFRILTRRYEFLGCSNSQLREHGFW 552
Query: 488 FFSKVGETSVLDIKNWMGE-FTAKNIAKYAARMGLCFSSTHATVEI--PPTEVDHELPDI 544
FF +T+ I++ G+ + + +A Y +R GLCFS++ TV++ E+ H+ DI
Sbjct: 553 FFCPNDDTNAQMIRDNCGDIYLERCVASYVSRFGLCFSASRDTVDVGMQDGELVHQ-KDI 611
Query: 545 KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWP-AKDDGIR 603
+ N Y FSDGIGKI+P LA +V + L PSA+QIRY G KGVV+ P ++
Sbjct: 612 EWNNYCFSDGIGKISPCLANKVTKALGY--KVKPSAFQIRYGGCKGVVSQDPDLGEEKDV 669
Query: 604 MSLRGSMKKFKSCHTSLEICSWTR 627
+ +R SM KF S LEI T+
Sbjct: 670 LVIRESMNKFNSESKKLEILQVTK 693
>gi|299752904|ref|XP_001832921.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298410053|gb|EAU88888.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1251
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 159/628 (25%), Positives = 265/628 (42%), Gaps = 140/628 (22%)
Query: 412 FLRVTFMDEG-LQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
FLRVTF DEG LQ +++ K V R IL +G + GRR
Sbjct: 469 FLRVTFADEGRLQYRSSD---------------RQVDHKAFVRARFGDILLNGLEIAGRR 513
Query: 471 YSFLAFSSNQLRDHSAWFFS---------KVGETSVLDIKNWMGEFTAKNI--------A 513
+ FLA+S + L++HS WF +V T+ I++ +G F + A
Sbjct: 514 FEFLAYSMSALKEHSVWFVKPFDVIENGHRVTVTADSIIQS-LGTFDGLDFEPRLMHCPA 572
Query: 514 KYAARMGLCFSSTH-ATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQ 568
+YAAR+ F++T T+E+ E+ + DI+ + + +DG+G ++P + + +
Sbjct: 573 RYAARISQAFTATDLCTIEVQDLEIT-VIDDIEVTSGGHKWTHTDGVGTMSPMASRAIWK 631
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS-CHTSLEIC-SWT 626
L P P+A Q+R G KG+++ G ++ LR SM KF++ +EI ++
Sbjct: 632 ALPKRKGPAPAADQVRIGGAKGMLSV-DYTLTGHKICLRPSMVKFEAPTRKYIEIARAFD 690
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQ----------ASMASKLNLMLVASDVAFEVL 676
R P +LNR +I +L L V F Q AS + ML + +
Sbjct: 691 RPTPYYLNRPLIMILEGLGVPYSTFEHFQDRAVRETRQAASSLRRAASMLDSYGLGSSFR 750
Query: 677 TASCAEQGNTAAI-------MLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLE 729
+S + I S + L+ + + + + V++
Sbjct: 751 LSSVMNSLDRLGIRHLNPDKFYSKAMEFAINHVLRDLKNHARIPIPGAWTLVGVADV--- 807
Query: 730 NCFSKHGSRFAETK----KLQVINGFVVIAKNPCLRPGDVRILEAVDRP------ELHHL 779
+ F + G FA K K + G ++I+++PC+ PGDVRI A+ P E L
Sbjct: 808 HRFLQPGEIFAYVKPTNEKGFYLEGDILISRSPCIHPGDVRITRAIGPPPPGSPFEREPL 867
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSC---------PPMECTP 830
+ +VF + G DLDGD Y NL+P S + P + P
Sbjct: 868 ANTVVF-----NVLASCLGGGDLDGDTY------NLLPLSDPALQGFRPTRIPEPSQYAP 916
Query: 831 AEAKPLTCHVNHQNLGQICNAHVVH-------------ADRSEY---------------- 861
AE + L +++ + +++ AD+S +
Sbjct: 917 AEKRYLEEKSTMRDVAEFVLEYILSDVLGMVSINWRIIADQSRHAYLATYPTANGDPDST 976
Query: 862 GAFDENCILLAKLAATAVDSPKTG------KIVTMPSHLKPK-KYPDFMEIEEY--QTYK 912
G FD +C+LLA L + AVD PK+G KI + LKP P+ ++ + + Y
Sbjct: 977 GIFDSDCMLLADLHSAAVDYPKSGTPVDFKKIPRLKHKLKPDWNAPETLDAQALSEKYYV 1036
Query: 913 SNKILGRLYRQIK---------GAYDEN 931
S+ LG+L+R+I+ GAY+++
Sbjct: 1037 SSTALGKLFRRIELPVEKGTVDGAYEQH 1064
>gi|389748392|gb|EIM89569.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1274
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 153/590 (25%), Positives = 243/590 (41%), Gaps = 125/590 (21%)
Query: 454 KRVKSILSDGFNLCGRRYSFLAFSSNQLRD-HSAW----FFSKVGETSVL--------DI 500
KRV L GF+L GR + F A+SS+ LRD H+ W F VG + + I
Sbjct: 490 KRVLDFLKPGFSLGGRHFDFFAYSSSSLRDSHALWAIHPFDVPVGASPTILCGHITADMI 549
Query: 501 KNWMGEFTA--KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKI 558
++ +G F+ +K AAR+G S+T +V + + D ++ D+ + Y +DG+G I
Sbjct: 550 RHSLGNFSTVINQPSKLAARVGQTCSATTPSVRLKREQWDDDMVDLGESPYEHTDGVGTI 609
Query: 559 TPDLAMEVAQILKLDG------SPPPSAYQIRYAGYKGVVA---CWPAKDDGIRMSLRGS 609
+ DL E+ L G P A+QIR+ G+KGVV C GIRM LR S
Sbjct: 610 SSDLRDEIWATLCSKGWDKDKDRAKPDAFQIRFLGFKGVVVVDYCLT----GIRMRLRPS 665
Query: 610 MKKF-----KSCHTSLEIC-SWTRFQPGFLNRQIITLLSTLNV-----------SDEIFW 652
MKKF + + S EI ++ R LNR I +L V + E +
Sbjct: 666 MKKFDVDEEEKNNASFEIVRAFDRPNRYSLNRSTIMVLEDRGVPIDTFMKLQEKAKETIF 725
Query: 653 TVQASMAS-----KLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML 707
T S+AS ++N + + D+ +L + ++ ++ + P E L+ +
Sbjct: 726 TAGDSIASFVAFLRINRLGIGFDLPL-ILERLAVLKDSSHKNVVRSFENPFLERVLRFAM 784
Query: 708 TYELGELK------------------ECQCFIQVSESSLENCFSKHGSRFA-----ETKK 744
L +LK E Q +IQ K G +A +
Sbjct: 785 NSRLRDLKHKAQIPVPGGFKLVGVADEGQAYIQEGLDPSSVATLKEGEIYACVRDGHKAE 844
Query: 745 LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC------DCLVFPQ-KGDRPHTNEA 797
+ + G I ++P PGD++ + A+ +P +C + +V P G R +
Sbjct: 845 PKFLKGDCFITRSPVNDPGDIQRVRAIGKPPEDKVCFFRGLQNVVVLPAVPGTRSLASCL 904
Query: 798 SGSDLDGDLYYVTW---DENLIPPSKKSCPPMECTPAEAKPL-------------TCHVN 841
G D+DGD++ + D NL+P K PP E L ++
Sbjct: 905 GGGDVDGDMFDIVGFDCDSNLLPTLHK--PPAEYKSVGTYTLDHPATEDDVWSFVVEYIQ 962
Query: 842 HQNLGQI-------------------CNAHVVHADRSEYGAFDENCILLAKLAATAVDSP 882
LG + N V D+SE G + C+ LAKL + AVD P
Sbjct: 963 SDVLGLLSERLLTIAGETLSSSVHRPTNGTDVSPDQSEDGMSNPLCLELAKLCSQAVDYP 1022
Query: 883 KTG------KIVTMPSHLKPK-KYPDFMEIEEYQTYKSNKILGRLYRQIK 925
K G +I P+ +P + + E Y+S++ LGRL+ ++
Sbjct: 1023 KNGIAVETDRIPYPPTRFRPNWARAEVSDEREGDFYQSDRALGRLFENVE 1072
>gi|389743114|gb|EIM84299.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1120
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 144/518 (27%), Positives = 224/518 (43%), Gaps = 73/518 (14%)
Query: 431 SYYVAPIVKDITSNSFSQKTG------VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDH 484
+Y + + I +N S + G + K ++ ++ +G G RY+FL ++ +QL+
Sbjct: 59 TYKIVVVSFKIRNNKDSYRDGDVRSRDIPKIMEHVVHEGIQQDGHRYTFLGYTESQLKAT 118
Query: 485 SAWFFSKVGETSVLDIKNWMGEFTA----KNIAKYAARMGLCFSSTHATVEIPPTEVDHE 540
F + + + G+ A KYAAR+GL FSST ++ P + V E
Sbjct: 119 QFMMFEG-DKAATQKLLRTFGKLDAVYQKSGYGKYAARLGLSFSSTAVGLDAPHSRVT-E 176
Query: 541 LPD-IKRNGYVFSDGIGKITPD-LAMEVA-QILKLDGSPPPSAYQIRYAGYKGVVACWPA 597
+PD + R+G + SDG G I LA+ A + ++ D QIR+ G+KG++ +P
Sbjct: 177 IPDLVARDGTLMSDGCGVIRDSVLAIICANRGIRRD----THCIQIRWNGHKGMLVGYPD 232
Query: 598 K--DDGIRM-----SLRGSMKKFKSCHTSLEICSWTR-FQPGFLNRQIITLLSTLNVSDE 649
D + M ++R SMKK+ TSLEI + + LN+ I LL T +
Sbjct: 233 AFCTDVLHMGENWIAVRPSMKKYDGRLTSLEINAVSHPAGSARLNKMYILLLLTAGIPAA 292
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQ----------- 698
+ KL+L + D A E+L + + Q + GF +
Sbjct: 293 TIHELLNEQLEKLDLFMTDRDKAIEILEGTDSAQLDADG----EGFNQELFEGLLASHDL 348
Query: 699 TEPHLQG-MLTYE---LGELKECQCFIQVSESSL-------ENCFSKHGSRFAETKKLQV 747
+EP+++ ML Y+ L+E C I V S L + V
Sbjct: 349 SEPYVKWLMLKYQKLRYRRLREKIC-IDVKLSWLLFGIVDESRTLKPDEVYIHMPHRDGV 407
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPH--TNEASGSDLDGD 805
I G+VV+ + P PGD+R+ +AV +PEL H +C+VF P T+ SG DLDGD
Sbjct: 408 IIGWVVVCRTPAYAPGDMRVFKAVSKPELLHHTNCIVFSGHESCPRSVTDMISGGDLDGD 467
Query: 806 LYYVTWD-------ENLIPPSKKSCPPMECTP--------AEAKPLTCHVNHQN--LGQI 848
++V D N+ PPS+++ P + +A T + H LGQI
Sbjct: 468 KFWVCSDPRLVPKRSNIFPPSQRASPAAAVSSRKNSLKDMPQASIDTFVIQHGTSLLGQI 527
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
H A E LA AVD KTG+
Sbjct: 528 SRKWTAHTANHPDLAASEESRKLASCFEAAVDLTKTGE 565
>gi|443927204|gb|ELU45719.1| RNA-directed RNA polymerase [Rhizoctonia solani AG-1 IA]
Length = 1713
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 182/411 (44%), Gaps = 65/411 (15%)
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD--IKNWMGEFTAKNIA 513
++ L+ G + G++Y F S++QLR S W + + LD I+ NIA
Sbjct: 88 IQRALTKGLFINGQQYRFYHHSNSQLRSRSCWLRAASSDEE-LDRRIEKLCDVSKINNIA 146
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ---IL 570
K A R+GL FS ++ P + ++PDI +FSDG G I+ +A+ I+
Sbjct: 147 KRAKRIGLLFSGAEIDWDLNPA-LTKDIPDITIAEELFSDGCGLISRRFMQLLAKKKKIV 205
Query: 571 KLDGSPPPSAYQIRYAG-----------YKGVVACWPAKDDGIR--MSLRGSMKKFKS-C 616
PS QIR +GV+A P D + + R SM+K K+
Sbjct: 206 HRGYRYTPSVIQIRAVCSFVSHNVTILIIQGVLAIHPQLDQAAQHHVHFRDSMRKLKTGA 265
Query: 617 HTSLEICSWTR-FQPGFLNRQIITLLSTLNVSDEIFWTVQAS-----------MASKLNL 664
+ + +++ +Q LN II LLS L +++E+ T Q + M+S +N
Sbjct: 266 DNTFSVVDYSKPYQFARLNNDIIVLLSALGITNEMLKTKQDAYFKWIESANKDMSSAMNF 325
Query: 665 M--LVASDVAFEVLTASCAEQGNTAAIM------LSAGFKPQTEPH------LQGMLTYE 710
+ L D+A V E+ A I ++A KP+T LQ +
Sbjct: 326 LSALGKDDLAERVFMDGLDEEQVQAQIRNAQVEEVNAFQKPETGKDRSRIFLLQSRFLFG 385
Query: 711 L----GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVR 766
+ G L+E + +++ E + G+ L V+ +NPCL PGD+
Sbjct: 386 VCDPYGLLEEGEVHVRIMEP-------RKGATTLSNIDLMVV-------RNPCLHPGDIL 431
Query: 767 ILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
L AV L HL DC+VF KG R +SG DLDGD + V WD +++P
Sbjct: 432 KLRAVHHTGLDHLVDCIVFSGKGKRAAPAMSSGGDLDGDRFTVVWDPDIVP 482
>gi|403374620|gb|EJY87268.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 171/717 (23%), Positives = 288/717 (40%), Gaps = 190/717 (26%)
Query: 354 RPVFDAYEKL-KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR- 411
R + +AY L K+ E ++ + +N +D+ + RR+ TPT +F ++ +R
Sbjct: 419 RTLLEAYRYLEKNSGEITLE---IQNETENDNDLRQ-RRIYQTPTLTLFFANQREQTNRV 474
Query: 412 ----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
F R+ +++ LQ + S QK + + +K ++
Sbjct: 475 IRQFKKYKDNFFRLVLVNDQLQKFHFG----------------SMKQKE-MLQHMKDLMK 517
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIK-----NWMGEFTAKN-IAKY 515
+ L +S++QL++HS W V TS+ +I+ + +G FT + K
Sbjct: 518 QELYIGDSLAQVLNYSNSQLKNHSVWM---VCSTSIPEIQPNAIISRLGTFTNEGGNLKM 574
Query: 516 AARMGLCFSSTHATVEIPP---TEVDHEL--------------PDIKRNGYVFSDGIGKI 558
AR G CFS+T ++ P EV ++ PD + YVF+DG G +
Sbjct: 575 FARRGQCFSTTKYVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDGCGGV 634
Query: 559 T------PDLAMEVAQILKLDGSPPPSAYQIRYA----------------GYKG-----V 591
PDL Q+ K QI++A GY +
Sbjct: 635 KGVLMLKPDLDGRKVQLRK---------SQIKFACENWGLEVIRCSTFSQGYLNRQVILL 685
Query: 592 VACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS-TLNVSDEI 650
++C DD + +S HT+LE + + +R + + S + N DE
Sbjct: 686 LSCLGV-DDNVFLS---------HLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDEN 735
Query: 651 FWTVQAS-MASKLNLMLVASDV--------------AFEVLTASCAEQGNTAAIMLSAG- 694
+A+ M ++L++ S + E + E+ T + LS
Sbjct: 736 ENKSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQ 795
Query: 695 -FKPQTEPHLQGMLTY----------------------------ELGELKECQCFIQVSE 725
F + EP +L+ E G L E + +++++
Sbjct: 796 VFFLENEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINR 855
Query: 726 SS----------------LENCFSKHGSRFAETKKL--QVINGFVVIAKNPCLRPGDVRI 767
S +EN K SR AE Q+I G V++ KNPC PGD+R
Sbjct: 856 GSYDYDQIQEKLVDEYDEIENADGKK-SRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRK 914
Query: 768 LEAV-DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
L AV + HL + +VF KG RP ++ SG DLDGD+Y WDE+L+ +K P
Sbjct: 915 LRAVGEHSTFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPA 974
Query: 827 ------ECTPAEAKPLTC------HVNHQNLGQICNAHVVHADR-SEYGAFDENCILLAK 873
E +++ T + NLG + + H+ +D+ G +++ C+ L+
Sbjct: 975 VYKKFEESIKTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSW 1034
Query: 874 LAATAVDSPKTGKIVTMPSH----LKPKKYPDFMEIEEY--QTYKSNKILGRLYRQI 924
+ AVD K GK V + K ++PD+ME + +T +S ILG+LYR +
Sbjct: 1035 YISIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAV 1091
>gi|403337310|gb|EJY67868.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 171/717 (23%), Positives = 288/717 (40%), Gaps = 190/717 (26%)
Query: 354 RPVFDAYEKL-KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR- 411
R + +AY L K+ E ++ + +N +D+ + RR+ TPT +F ++ +R
Sbjct: 419 RTLLEAYRYLEKNSGEITLE---IQNETENDNDLRQ-RRIYQTPTLTLFFANQREQTNRV 474
Query: 412 ----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
F R+ +++ LQ + S QK + + +K ++
Sbjct: 475 IRQFKKYKDNFFRLVLVNDQLQKFHFG----------------SMKQKE-MLQHMKDLMK 517
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIK-----NWMGEFTAKN-IAKY 515
+ L +S++QL++HS W V TS+ +I+ + +G FT + K
Sbjct: 518 QELYIGDSLAQVLNYSNSQLKNHSVWM---VCSTSIPEIQPNAIISRLGTFTNEGGNLKM 574
Query: 516 AARMGLCFSSTHATVEIPP---TEVDHEL--------------PDIKRNGYVFSDGIGKI 558
AR G CFS+T ++ P EV ++ PD + YVF+DG G +
Sbjct: 575 FARRGQCFSTTKYVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDGCGGV 634
Query: 559 T------PDLAMEVAQILKLDGSPPPSAYQIRYA----------------GYKG-----V 591
PDL Q+ K QI++A GY +
Sbjct: 635 KGVLMLKPDLDGRKVQLRK---------SQIKFACENWGLEVIRCSTFSQGYLNRQVILL 685
Query: 592 VACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLS-TLNVSDEI 650
++C DD + +S HT+LE + + +R + + S + N DE
Sbjct: 686 LSCLGV-DDNVFLS---------HLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDEN 735
Query: 651 FWTVQAS-MASKLNLMLVASDV--------------AFEVLTASCAEQGNTAAIMLSAG- 694
+A+ M ++L++ S + E + E+ T + LS
Sbjct: 736 ENKSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQ 795
Query: 695 -FKPQTEPHLQGMLTY----------------------------ELGELKECQCFIQVSE 725
F + EP +L+ E G L E + +++++
Sbjct: 796 VFFLENEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINR 855
Query: 726 SS----------------LENCFSKHGSRFAETKKL--QVINGFVVIAKNPCLRPGDVRI 767
S +EN K SR AE Q+I G V++ KNPC PGD+R
Sbjct: 856 GSYDYDQIQEKLVDEYDEIENADGKK-SRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRK 914
Query: 768 LEAV-DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
L AV + HL + +VF KG RP ++ SG DLDGD+Y WDE+L+ +K P
Sbjct: 915 LRAVGEHSTFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPA 974
Query: 827 ------ECTPAEAKPLTC------HVNHQNLGQICNAHVVHADR-SEYGAFDENCILLAK 873
E +++ T + NLG + + H+ +D+ G +++ C+ L+
Sbjct: 975 VYKKFEESIKTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSW 1034
Query: 874 LAATAVDSPKTGKIVTMPSH----LKPKKYPDFMEIEEY--QTYKSNKILGRLYRQI 924
+ AVD K GK V + K ++PD+ME + +T +S ILG+LYR +
Sbjct: 1035 YISIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAV 1091
>gi|66736429|gb|AAY54273.1| RNA-dependent RNA polymerase [Caenorhabditis remanei]
Length = 200
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 106/190 (55%), Gaps = 18/190 (9%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+ Q F+Q + +S E + + + + QV+ G V++ KNPC+ GDVRI E
Sbjct: 15 ETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCIVTGDVRIFE 74
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT 829
AVD PELHHLCD +VFPQ G RPH +E +GSDLDGD Y V WD+ L+ K+ P + T
Sbjct: 75 AVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLL--LDKNEAPFDFT 132
Query: 830 PAEA-----KPLTCHVNHQ---------NLGQICNAHVVHADRSEYGAFDENCILLAKLA 875
+ + + + H+ ++G I N H+ ++D +YG C+ LAK
Sbjct: 133 VEKKEMPYDREMIDQLMHEFYVKYLKLDSVGTISNNHLHNSD--QYGLNSRVCMDLAKKN 190
Query: 876 ATAVDSPKTG 885
AVD K+G
Sbjct: 191 CQAVDFTKSG 200
>gi|406867650|gb|EKD20688.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 901
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 148/540 (27%), Positives = 219/540 (40%), Gaps = 111/540 (20%)
Query: 380 PKNIDDIAEVRRLVITPTKAYWFLES--------KDVADRFLRVTFMDEGLQTM--NANV 429
PKN+ I R + T + LES K+ D F+RV+F E + + ++ V
Sbjct: 365 PKNVTSIHRARVTATSITLSGPQLESNNRTLRKYKEFHDYFMRVSFGAEDGEPLMYHSKV 424
Query: 430 LSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFF 489
+Y+V R + I G + GR +SFL F + LR+ S W
Sbjct: 425 SNYHV-----------------YHGRFQEIPDRGVKIGGRVFSFLGFPQSSLRERSYWLV 467
Query: 490 SKVGETSVL----DIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI 544
+ G L DI +G FT ++ AK AAR+G FS T + + I P V + DI
Sbjct: 468 APFGSLGSLLLDRDITGGLGNFTLIRSPAKCAARIGQAFSDTRSFMTIDPLIV-RNMEDI 526
Query: 545 KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRM 604
KR+GYVFSDG G I A + G KG+++ ++ DG ++
Sbjct: 527 KRSGYVFSDGCGTI---------------------ALSLLCLGAKGMISL-DSRLDGDQL 564
Query: 605 SLRGSMKKFK-SCHTSLEICSWT-RFQPGFLNRQIITLLSTLNVSDEI-----FWTVQAS 657
LR SM KF S +EI T R P ++NR+ I + + EI +
Sbjct: 565 CLRDSMIKFDGSTSNDIEIYDITYRPLPVYMNRKFIKIDHGEPATKEITSLRMITESPIN 624
Query: 658 MASKLNLMLVASDVAF-EVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKE 716
+S L V F E++ + + A I + G+ HL G++ E G LKE
Sbjct: 625 ASSFLKRQGVGDSFQFPELILRLLRKLKHEARIPVPRGW------HLHGIMD-ETGSLKE 677
Query: 717 CQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
+ F E ++N + +VI + P L PGDVRI +AV P
Sbjct: 678 GEIFCVGVEEGVKNVITSER---------------LVITRAPALDPGDVRIAKAVMPPAE 722
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP------ 830
L E G DLDGD +YV WD++ +P ++ P
Sbjct: 723 SPLM---------------ELGGGDLDGDRFYVIWDDDALPENEFEAAEYPSLPRWILAA 767
Query: 831 ---AEAKPLTCHVNHQNLGQICNAHVVHADR--SEYGAFDENCILLAKLAATAVDSPKTG 885
A+ + + + G + + V + + G E C A L AVD PKTG
Sbjct: 768 LFNAKISLDSALIIKRTSGSVPSQLVTASQQIICRGGTDAEKCKTFAMLHGVAVDFPKTG 827
>gi|4768840|gb|AAD29638.1|AF117611_1 DosA protein [Dictyostelium discoideum]
Length = 1069
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 154/568 (27%), Positives = 230/568 (40%), Gaps = 105/568 (18%)
Query: 541 LPDI-KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD 599
+PDI + G+ F++G G I L + Q + S AYQIR G KGV+ D
Sbjct: 2 IPDIISKGGHNFTEGCGFIGFKLVELINQQNNYNSST--CAYQIRLGGSKGVLVLNENID 59
Query: 600 DGIRMSLRGSMKKFK---------SCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEI 650
+ + + +R SM KF+ H +LEI S + LNRQ ITLLS V D
Sbjct: 60 E-MSLQIRPSMSKFELDYKSGQLDGGHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDST 118
Query: 651 FWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQG----- 705
F + + +LN A N + +L F+ TE L
Sbjct: 119 FLQM---LEVELNQ------------NAQTLVDVNLSKELLGDFFQHITEYELFNDYYIR 163
Query: 706 --MLTYELGELKECQ--CFIQVSES-SLENCFSKHGSR-----FAETKKL---------Q 746
+L +L + Q C+I+V ES +L G+ + E ++L +
Sbjct: 164 SILLKLYKSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEVEELDPIDNLMKPK 223
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
VI G V + KNPC PGDVR L+A+D P L+ + L F G P+ + SGSDLDGD
Sbjct: 224 VIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLDGDR 283
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPLTC---------------------------- 838
Y+V +D+ LI + P PL
Sbjct: 284 YFVIYDQTLIREDLITHEPYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKSTN 343
Query: 839 ------------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
+V+ LG I N H+ +D + + N I +A A VDS KT
Sbjct: 344 NTPTKLSDIYLKNVDKSKLGTISNTHLAISDIEKVSSI--NSIKVAIQCAIEVDSVKTSV 401
Query: 887 IVTMP----SHLKPKKYPDFMEIEEYQTYKSNKILGRLY----RQIKGAYDENISVSSEV 938
+P S LK K YP FM+I+ T++ R Y R I YD ++
Sbjct: 402 HGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDSAENLLWFG 461
Query: 939 DINPVDIHYDTDLEVPGSVDF-TADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSM-PK 996
D P + D L V G ++ + Y ++N +L ++ +E I M P+
Sbjct: 462 DFLP-EAKVDESLLVQGYKEYLNHENFTTYMDYKSKINSILRRFGAQSEEDLLIGFMDPQ 520
Query: 997 YNSRKQGELQERLKHSYSAFRKEFRQVF 1024
++ + E + K +Y++ +K F F
Sbjct: 521 FSEKLSIEAKAHFKSNYNSIQKLFYHNF 548
>gi|302678369|ref|XP_003028867.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
gi|300102556|gb|EFI93964.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
Length = 711
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 180/719 (25%), Positives = 285/719 (39%), Gaps = 183/719 (25%)
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGL 521
DG N+ +YS+L F+ +QL+D + + ++W + ++ +G
Sbjct: 80 DGTNV---KYSWLGFTESQLKDGTFLLLR--------EDEHW-------TVDRFLDALG- 120
Query: 522 CFSSTHATVEIPPTEVDHELPDIK-RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSA 580
V+ P E+ +PD + +G +F+DG G I A EV L++ +
Sbjct: 121 -------NVKSIPDELVATIPDFQATDGTLFTDGCGLIRDSCAAEVCSALEI--PEDTTV 171
Query: 581 YQIRYAGYKGVVACWP-------AKDDG----IRMSLRGSMKKFKSCHTSLEICSWTRF- 628
+QIR G KG++ +P +D G ++++LR SM+K+ T LEI S R
Sbjct: 172 FQIRRGGVKGLLVRYPDVVFDRICRDAGRRGPMKIALRPSMRKYPGGPTVLEIHSVARRP 231
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQG---- 684
+ LNR I LL TL V E F ++ + ++L++ + A + L A G
Sbjct: 232 RSARLNRHFIILLLTLGVRLEAFESLLRANLEFIDLIMTSRQRALDALEAELDADGAGFD 291
Query: 685 NTAAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKE 716
+L AGF+ +EPH++ +L ELG L+E
Sbjct: 292 QELHDLLLAGFQ-LSEPHVRCLLERLQKRSLDVLRKKLNIRVKNSFYLFGVCDELGVLRE 350
Query: 717 CQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
+ +I V+ V G V++ +NP +R+L+AV+RP L
Sbjct: 351 GEVYINVAG--------------------DVKLGTVLVGRNPAYSTSVLRVLQAVNRPGL 390
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP----PMECTPAE 832
HL +C+VF G R T++ G D+DGD ++VT + +LIPP P P+ PA
Sbjct: 391 SHLRNCIVFASGGARSETSKMQG-DVDGDNFWVTTEPSLIPPRMAEPPPFAQPVSTAPAP 449
Query: 833 AKPL--TCH-VNHQNLGQI--CNAHVV-----HAD--------RSEY------GAFDENC 868
P T H V+ ++ I + H V H D R + A+ EN
Sbjct: 450 MSPEANTVHTVSEIDMHTISGVDMHTVSEIDMHEDALKTYMRLRHSFVLGQASKAWMENV 509
Query: 869 ILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAY 928
+L ++LA V G + +K +E T + I ++ G
Sbjct: 510 VLTSELADAPVARELAGIVERAVDLVKSGGSASRLESNLKTTLGTMSI-----QRTPGWQ 564
Query: 929 DENISVSSEVDINP----VDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVN 984
D + S + +P D D DL++ GSVD ++
Sbjct: 565 DPLAFLVSIIPSSPRGQQTDFTIDPDLDLSGSVDRE-------------------EWENL 605
Query: 985 RKEFRHIWSMPKYNS------RKQGELQERLKHSYSAFRKEFRQVFEK-MNSDFELSDNE 1037
+E R I MP +N+ R + E E A KE V E+ + S F +
Sbjct: 606 VEEARRI--MPLFNNALASAIRTEQETAEDGDDEREAM-KETDVVKERFLKSHFPRVNIM 662
Query: 1038 KNVLYEQKASAWYQVTY--HREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKC 1094
KASAWY Y H+E +F+W+ YLA IK C
Sbjct: 663 TLPKQWAKASAWYVTGYRAHKE--------------------AFSWLPARYLAHIKAHC 701
>gi|27413485|gb|AAO11660.1| hypothetical protein [Arabidopsis thaliana]
Length = 143
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGG-VWRCRLKTSCTPSESYPNFFIEN 60
E K V +QV++ GF K +L YLEN+VG VWRCRLKTS TP SYPNF I +
Sbjct: 4 EGNMKNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIID 63
Query: 61 VAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQ 120
+ + K D YE+V PHAFVH + MDAAE +L L G+ LK SL ENP+ LN
Sbjct: 64 TSNIPKFDCYERVVPHAFVHCDAHKSL---MDAAEQXKLILGGQPLKFSLSSENPYTLN- 119
Query: 121 RGGTSAPLKLPDVYVEIGSLVTQDEFFV 148
P KL V +EIG+ V+QD+FF+
Sbjct: 120 ------PYKLTGVSLEIGT-VSQDDFFL 140
>gi|119370386|gb|ABL68090.1| putative RNA-directed RNA polymerase 3 [Nicotiana attenuata]
Length = 110
Score = 122 bits (305), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 4/87 (4%)
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLS 692
LNRQI+TLLS+L+V D IFW +Q M S L+ MLV SDVAF+V+TASCAE GNTAAIMLS
Sbjct: 1 LNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLS 60
Query: 693 AGFKPQTEPHLQGMLT----YELGELK 715
AGFKPQ+EPHL+GML+ +LG+L+
Sbjct: 61 AGFKPQSEPHLRGMLSSIRASQLGDLR 87
>gi|238479184|ref|NP_001154496.1| uncharacterized protein [Arabidopsis thaliana]
gi|61742572|gb|AAX55107.1| hypothetical protein At2g05370 [Arabidopsis thaliana]
gi|330250828|gb|AEC05922.1| uncharacterized protein [Arabidopsis thaliana]
Length = 143
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGG-VWRCRLKTSCTPSESYPNFFIEN 60
E K V +QV++ GF K +L YLEN+VG VWRCRLKTS TP SYPNF I +
Sbjct: 4 EGNMKNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIID 63
Query: 61 VAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQ 120
+ + K D YE+V PHAFVH + MDAAE +L L G+ LK SL ENP+ LN
Sbjct: 64 TSNIPKFDCYERVVPHAFVHCDAHKSL---MDAAEQSKLILGGQPLKFSLSSENPYTLN- 119
Query: 121 RGGTSAPLKLPDVYVEIGSLVTQDEFFV 148
P KL V +EIG+ V+QD+FF+
Sbjct: 120 ------PYKLTGVSLEIGT-VSQDDFFL 140
>gi|409046078|gb|EKM55558.1| hypothetical protein PHACADRAFT_173705 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1167
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 160/580 (27%), Positives = 243/580 (41%), Gaps = 86/580 (14%)
Query: 412 FLRVTFMDE-GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRR 470
FLRV F DE G Q VL S F V +R LS GF L R
Sbjct: 412 FLRVDFADEEGFQYRMDRVLD-----------SRRF-----VRERFGRFLSQGFVLVDRH 455
Query: 471 YSFLAFSSNQLRDHSAWF---FSKVGETSVLD-IKNWMGEFTAKNI--------AKYAAR 518
+ FL +S + L+ H+ WF F +T +D I +G F A+ AR
Sbjct: 456 FDFLQWSQSGLKQHAVWFVKEFQMSHDTVTVDSIIADLGTFHDTPYDPRLMYCPARLGAR 515
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIK-RNG-YVFSDGIGKITPDLAMEVAQILKLD--- 573
L F++T A VE+ E PDI+ NG F+DG G I+ +L V + L+
Sbjct: 516 RALAFTTTDAAVEVE-AEEIVVEPDIEDANGKRSFTDGAGLISEELMTAVWEELRKKSRR 574
Query: 574 ---GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSL-EICS-WTRF 628
P Q R+ G KG + + G + +R SM KF++ + + E+ + +TR
Sbjct: 575 YRRAHMMPDVIQHRFQGSKGT-STVSRRLPGRVLVIRPSMIKFEATGSRMVEVAAAFTRA 633
Query: 629 QPGFLNRQIITLLSTLNVSD--EIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQG-- 684
P LNR +I LL L + EI +Q ++ + + A +L G
Sbjct: 634 GPFRLNRPLIMLLEGLRIRGGYEILKKLQDAVIQETKDAANSLSTAARLLEPHGLGTGFK 693
Query: 685 ------NTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENC-----FS 733
N A + L + P L + + L +LK +L +
Sbjct: 694 VSSVFANLARLELDSMPDPFFHRVLNVAIYHILRDLKYHARIPVPGGYTLVGVADPYGYL 753
Query: 734 KHGSRFA-----ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRP------ELHHLCDC 782
G FA + + G ++I+++P + PGDV+I+ A+ RP + H + +
Sbjct: 754 GEGEVFACVTTSTNAEPIFLEGEMMISRSPTVHPGDVQIVRAIGRPPKGSEFDKHPIMNA 813
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP-----------PSKKSCPPMECTPA 831
LVF G RP + DLDGD+Y T E L+P ++K P
Sbjct: 814 LVFATIGKRPPASCLGNGDLDGDVYVCTTKEELLPKQTRAPASYDAAARKEVPHQSTQQD 873
Query: 832 EAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVT-- 889
A +T + N+G I + + AD+ G FD C+ LA L + A D PKTG V
Sbjct: 874 MADFVTEFICSDNIGIIASRWLELADKR--GIFDPGCLRLAYLHSLATDYPKTGLPVPLE 931
Query: 890 -MPSHLKPKKYPDFMEIE---EYQTYKSNKILGRLYRQIK 925
+P + PD+ E + Y+S + LGRL+R+++
Sbjct: 932 YLPGTDMRRGRPDWSAPETEGSRRFYQSTRYLGRLFREVR 971
>gi|290993091|ref|XP_002679167.1| RNA dependent RNA polymerase [Naegleria gruberi]
gi|284092782|gb|EFC46423.1| RNA dependent RNA polymerase [Naegleria gruberi]
Length = 1235
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 216/499 (43%), Gaps = 110/499 (22%)
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHE---LPDIKRNGYVFSDGIGKITPDLA 563
+ +KNI K R+ L + PTE+ +PDI+R+G+ F+DG G I+PD+A
Sbjct: 310 YDSKNILKQRIRLAL------YNTPVIPTEIIQYFTVIPDIERDGFNFTDGCGFISPDMA 363
Query: 564 MEV-AQILKL---------------------------DGSPPPSAYQIRYAGYKG--VVA 593
+V IL D S PSA+QIR+ G KG VV
Sbjct: 364 KKVYKHILNAENRVLIKTDQEEDEIGYDEQRGFDLFSDSSYIPSAFQIRFRGAKGMLVVN 423
Query: 594 CWPAKDDGIRMSLRGSMKKFKS------CHTSLEI------CSWTRFQPGFLNRQIITLL 641
+ + + LR SM K K+ ++L+I C TR +N I+ LL
Sbjct: 424 TETFEKYRVHIVLRESMVKCKTNEKVDQSFSTLQIVGHSSPCELTR-----VNSTIMHLL 478
Query: 642 STLNVSDEIFWTVQASMASKLNLML---VASDVAFEVLTASCAEQGNTAAIML-----SA 693
S + + E+ V ++ + L V D EV+ + N ++ + +
Sbjct: 479 SGCDSNGEVRKRVLEMASAHVQNSLDKYVHEDT--EVIARQYMKDNNLISLNVLSTTKNK 536
Query: 694 GFKPQTEPH----------------LQGMLT-YELGELKECQCFIQVSESSLENCFSKHG 736
GF P+ L G++ YE+ L E + F+Q+S
Sbjct: 537 GFAFLAGPYKSLITSLKIPFSNSRRLYGVVDPYEV--LNEGEVFVQISS----------- 583
Query: 737 SRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNE 796
F QV+ +V+ K PCL GD+R ++AV P+L HLCD +VF KG RP N
Sbjct: 584 --FKNPSHKQVLQKEIVLTKEPCLHRGDLRKIKAVYYPKLSHLCDVIVFSSKGKRPVPNM 641
Query: 797 ASGSDLDGDLYYVTWDENLIPPSKKSCPPM---ECTPAEAKPLTCHVNHQNLGQICNAHV 853
SGSDLDGD ++V WD+ ++ K P + E + +P V +G + +A+V
Sbjct: 642 ISGSDLDGDQFFVCWDDLIVDNVKIFEPGLFDEEIKQEDIRPFEPDVFKDWVG-VRHAYV 700
Query: 854 VH--ADRSEYGAFDENCILLAKLAATAVDSPKTG--KIVTMPSHLK----PKKYPDFMEI 905
H ++ + +++ L ++ AV SPK G + T L+ YP + +
Sbjct: 701 DHHGSNWTNDENWNKEMRRLCEIVNHAVGSPKNGVISVATREEDLRFIDNFPGYPHYHQS 760
Query: 906 EEYQTYKSNKILGRLYRQI 924
+ KS+ + +Y+Q+
Sbjct: 761 KRGALKKSSSLASEVYQQM 779
>gi|34447177|dbj|BAC84970.1| RNA-directed RNA Polymerase [Vigna unguiculata]
Length = 257
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 130/263 (49%), Gaps = 22/263 (8%)
Query: 836 LTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
T ++ + +LG I NAH V AD A E C+ LAKL +TAVD PKTG +P L
Sbjct: 5 FTNYIVNDSLGIIANAHTVFADNQPRKAMSEECLKLAKLFSTAVDFPKTGVPAVIPRVLY 64
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDLEVP 954
K+YPDFME + +TY S ++G+LYR++ A + S V YD D+EV
Sbjct: 65 VKEYPDFMEKSDKETYISPNVIGKLYREVIEAISSSDGGSISSFTREVARTSYDFDMEVD 124
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPK-YNSRKQGELQERLK 1010
G +D+ DA K +YD +L L+ Y + + +I + K +N R+ E +
Sbjct: 125 GFLDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKCFNKRRDAEA---IN 181
Query: 1011 HSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGS 1070
+ ++ RK+ R F + N+ D+E KASAWY VTYH + QG
Sbjct: 182 KAVTSLRKDARSWFNEGNN----GDDEY-----AKASAWYHVTYHPSY----WGCYNQGM 228
Query: 1071 ARSVVLLSFAWIANDYLARIKIK 1093
R LSF W L +IK K
Sbjct: 229 GRD-HYLSFPWCVFPQLLQIKKK 250
>gi|395327643|gb|EJF60041.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 734
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 184/426 (43%), Gaps = 54/426 (12%)
Query: 441 ITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSK----VGETS 496
++ N ++ + + + + + +G G Y FL ++ +Q++ FF + E
Sbjct: 46 VSVNKKARDSTLRQTLARWIYEGIEHNGTVYRFLGYTESQVKAGKLMFFHEGEGWTVERM 105
Query: 497 VLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKR-NGYVFSDGI 555
+ + G + KYAAR+GL FSST +++IP E E+PD+ +G + SDG
Sbjct: 106 LESFGDLPGVYLKSGYGKYAARLGLSFSSTVQSLDIP-LECAIEIPDLTAPDGSLHSDGC 164
Query: 556 GKITPDLAMEVAQILKLDGSPP-PSAYQIRYAGYKGVVACWPAKDDGIR----------- 603
G I A AQ+ PP + +Q+R G KG++ +P + +R
Sbjct: 165 GMIRDSFA---AQLCARHNLPPDTTVFQVRRGGIKGLLVRYPDNEFDVRCRTHSRTRGGH 221
Query: 604 --MSLRGSMKKFKSCHTSLEICSWTR-FQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
++ R SM K+ T LE+ + LN Q + LL TL V IF +
Sbjct: 222 YMIAYRPSMFKYAGGPTCLELNNHNSPSASARLNVQFMALLLTLGVPFAIFQRLVLDQLD 281
Query: 661 KLNLMLVASDVAFEVLTA---SCAE----QGNTAAIMLSAGFKPQTEPHLQGMLTYELGE 713
+ +L + A + + + AE QG A ++ +EP+++ ++L
Sbjct: 282 LIGSILTDREKALQYVKGELDAAAEDDFAQGLYAMLLARQDL---SEPYVR----HKLET 334
Query: 714 LKECQCFIQVSESSLE--------------NCFSKHGSRFAETKKLQVINGFVVIAKNPC 759
+ Q ++ SL + + + V+ V++ +NP
Sbjct: 335 FQRKQYITLRNKMSLRIPDSAYLFGVVDEAGVLAPNEVHVNLPNRSGVLVRDVIVGRNPS 394
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
PGD R L AVD P L H +C+VF + +G DLDGD+Y+V WD LIPP
Sbjct: 395 YYPGDFRKLRAVDHPSLRHHRNCIVFSSNAAHSIPDTIAGGDLDGDMYFVCWDPCLIPP- 453
Query: 820 KKSCPP 825
+ PP
Sbjct: 454 -REAPP 458
>gi|403358455|gb|EJY78878.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1079
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 138/625 (22%), Positives = 238/625 (38%), Gaps = 149/625 (23%)
Query: 409 ADRFLRVTFM--DEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D+FL++ F+ ++ L+ +N + I + ++ V + +IL G ++
Sbjct: 270 VDKFLKIKFLGGNQELELLNDQYMR---------IKGDYQIRRNLVTNLLWNILGYGISI 320
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSKVGET------------------SVLDIKNWMGEFT 508
+ + FL +S++QL+D S WF + E S L+ K ++GE
Sbjct: 321 NNKTFKFLGYSNSQLKDRSFWFLRQAVENDLKLNSAIMSMYGIVAIPSNLNKKEYLGE-- 378
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV------FSDGIGKITPDL 562
+ ++ ++S+ +++ ++ + DI R+ Y F+DG G I+ L
Sbjct: 379 ---VLNCHGKVANNYTSSDFIIKLERNQI-QVINDIVRHDYQDNRDFNFTDGNGLISQKL 434
Query: 563 AMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEI 622
+ + Q G S YQ+R G KG + + G ++ LR SM K K+ T L I
Sbjct: 435 SNMINQHY---GLKNCSVYQVRIGGAKGTLTV-DQRLKGKKVILRSSMIKLKNNITDLNI 490
Query: 623 CSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAE 682
+ G+ NRQ+I L V E F+ L+ ++ ++
Sbjct: 491 VQCGKAGLGYSNRQVIALFEHDGVHKEEFFE------------LIKKNIQYQFFKQLSQG 538
Query: 683 QGNTAAIMLSAGFKPQTEPHLQG-----------MLTYE--------------------- 710
Q + + F Q HL G +L Y+
Sbjct: 539 QAQSVS-YYDLAFLEQHLTHLVGAFKYFIRKKPEILRYDPLFQSIVNQLKQEIMRQITEK 597
Query: 711 -----------------LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVV 753
LG L+E + F+Q+ + + + ++ QVI G VV
Sbjct: 598 GRIYMKNSVVLLGVPDFLGILQENEIFLQIPKYN----------DLEQGEQYQVIRGDVV 647
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
+ +NP L P D+R L AVDRPE +L + +VF +G P + +G D DGD Y + W+
Sbjct: 648 VTRNPALHPNDIRKLVAVDRPEFRYLRNAVVFSTQGSIPPSTMMAGGDHDGDRYLIIWER 707
Query: 814 NLI--------------PPSKKSCPPMECTPAE-AKPLTCHVNHQNLGQICNAHVVHADR 858
+++ P P A + +V LG I + H+ D
Sbjct: 708 SIVNNFLANQIRYKYFDPKRLMKKGRYNIQPQMIASSIVKYVRSDYLGLIDSMHLGLCD- 766
Query: 859 SEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL-------KPKKYPDFM-------- 903
G + + L L AVD K GK + L +K P FM
Sbjct: 767 -YLGPNHDFTLYLEYLHRQAVDYSKHGKAPNIKQFLLERIRLNYDRKQPLFMSSMIRSQN 825
Query: 904 EIEEYQTYKSNKILGRLYRQIKGAY 928
+ + SNK + +Y+ ++
Sbjct: 826 HLRRCDIFDSNKTMSTIYKMFHSSF 850
>gi|341879478|gb|EGT35413.1| hypothetical protein CAEBREN_30970 [Caenorhabditis brenneri]
Length = 1948
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 127/460 (27%), Positives = 200/460 (43%), Gaps = 96/460 (20%)
Query: 707 LTYELGELKECQCFIQVSE-------SSLENCFSKHGSRFAETKKLQVINGFVVIAKNPC 759
+T E G L+ Q F+Q +E S + K S F + K+Q I+G +++ K P
Sbjct: 1049 VTDETGLLQYGQVFVQYTENVNNKHPSGVSGKILKGKSNFL-SFKIQFISGPLMVTKFPS 1107
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
+ GDVR+ EAVD PEL HL + +VFPQ G R +E +GSDLDGD Y V WD L
Sbjct: 1108 MCEGDVRMYEAVDIPELRHLENVIVFPQNGPRSMPDEMAGSDLDGDEYAVIWDPFLFFER 1167
Query: 820 KKSCPPMECTPAEAKPLTC-------------HVNHQNLGQICNAHVVHADRSEYGAFDE 866
++ C K L +N +++G H+ +D +YG +
Sbjct: 1168 NETAFAY-CNDKPEKKLNIDEMDEGMNVFYAEFMNQEDVGITATNHLHQSD--QYGINSK 1224
Query: 867 NCILLAKLAATAVDSPKTGKIVTMPSHL-----------------KPKKYPDFM--EIEE 907
C +LA+ A +D K+G PS L K ++ PDF
Sbjct: 1225 VCNILAEKNAMLLDYSKSG---VAPSPLTFNWDKHPETKKWVPPEKSERKPDFANNRFSM 1281
Query: 908 YQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQK 967
QTY+S+++LG L+R+++ D ++ S+E V + D L G + + A Q
Sbjct: 1282 NQTYQSSRLLGTLHRELRSVNDV-VATSAE---KQVPLVLDDLLVWTGWEQYKSVAEAQL 1337
Query: 968 CSYDGQLNGLLGQYNVNR---------KEFRHIWSMPKYNSRKQ----GELQERLKHSYS 1014
Y+G L ++ + VN +E R+ S + + Q ++ ++ Y
Sbjct: 1338 LRYNGALRSIMETFGVNTEAEVFSGYYREIRNRQSDKEQDDMSQYCTENVIETQVTALYR 1397
Query: 1015 AFRKEFRQVFEKMNSD------FELSDN-----EKNVLYE----------QKASAWYQVT 1053
FR EF + F + D + +N EK+VL KA A+Y+
Sbjct: 1398 KFRAEFFEEFAEHTPDSPAYMRLTVPENERVWEEKDVLRRVCRKPSNAMMAKAVAYYRTC 1457
Query: 1054 YHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
Y + +E+G + LSFAW+A D L ++ K
Sbjct: 1458 YQ--------NAVEKGDRK----LSFAWLAYDILNIVRGK 1485
>gi|183233879|ref|XP_651309.2| RNA-directed RNA polymerase [Entamoeba histolytica HM-1:IMSS]
gi|169801365|gb|EAL45936.2| RNA-directed RNA polymerase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710750|gb|EMD49768.1| RNA-dependent RNA polymerase, putative [Entamoeba histolytica KU27]
Length = 1026
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 173/703 (24%), Positives = 286/703 (40%), Gaps = 135/703 (19%)
Query: 469 RRYSFLAFSSNQLRDHSAWFF-SKVGETSVLDIKNWMGEFTA---KNIAKYAARMGLCFS 524
R + FL + +Q R + WF ++ G+T++ ++ + + KN R GL S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSPKIKNAGILLMRTGLFGS 397
Query: 525 STHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQILKLDG-----SPPP 578
+ ATV I P ++ + DI NGY FSDG+G+I LA +V K + S P
Sbjct: 398 DSIATVGIYPQQI-KVIDDITNENGYTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSDEP 456
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMS----LRGSMKKFKSCHTS---LEICSWTRFQPG 631
A+QIR+AG KGV+ D + M+ R S K ++ + L + +F+ G
Sbjct: 457 YAFQIRFAGVKGVLTV-----DRLDMTENIYFRPSQIKIEALPKTIQKLRVIQIPQFRSG 511
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVA--FEVLTASCAEQGNTAAI 689
+N Q+ L L + F + K + ++ F+ T + + I
Sbjct: 512 RMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREIISLFQRFTNNPVIEVALKII 571
Query: 690 MLSAGF-KPQTEPHLQGM-LTYELGELKECQCFIQ--VSESSL------ENCFSKHGSRF 739
M S G K EP ++ L + L E FI+ + S+ E+ + G F
Sbjct: 572 MASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVF 631
Query: 740 AE--TKKLQVINGFVVIAKNPCLRPGDVRILE-AVDRPELH---------HLCDCLVFPQ 787
+ T + + + +++ K P PGD +L VD+ L +L D +VF
Sbjct: 632 IQVTTSTVTIPSSRLLVVKFPATHPGDFVLLNNVVDKINLEKKKGFERLTYLRDVIVFSS 691
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIP-PSKKSCPP-------------MECTPAEA 833
KG+RP N+ SG DLDGD Y + W+ +P P S P +E T +
Sbjct: 692 KGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEIHSHAPATYDSEKVHLEKFLEFTDMKR 751
Query: 834 KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
L+ + L +I AH G E L++L + VD+PKTG V
Sbjct: 752 AFLSQLYSKFVLSRISVAH--KESCMNIGMCAEVTKSLSQLISITVDAPKTGAEV----- 804
Query: 894 LKPKKYPDFMEIEEY--QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-----DIH 946
D EI E Q K+N + +K ++E I + + + IH
Sbjct: 805 -------DGGEINELVEQVSKTNNSNKSILLVLKSFFNEQIPIIMDTFYTELIELVNTIH 857
Query: 947 YD----TDLEVPGSVDFTADARNQKCSYDGQLN-----------------------GLLG 979
Y+ +D +P + F RN+ ++ ++N G+
Sbjct: 858 YNSEFISDSILPDVIPFARKTRNE---FNNEINWFLKKSIPQRILRGSEPLQLIIGGVFK 914
Query: 980 QYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKN 1039
+ NV+R E W +++ E+ + L YS +RK+ Q +
Sbjct: 915 KGNVDRLE----W------EKEEKEINQTLLVIYSNYRKKVEQ-----------EAGRRK 953
Query: 1040 VLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWI 1082
+ + YQVTY +++ + +LL+ G + V LL F W+
Sbjct: 954 IPLRRLCDVCYQVTYDKKYYTNN-ELLDCGKNKVVCLL-FPWV 994
>gi|167375406|ref|XP_001733628.1| RNA-dependent RNA polymerase [Entamoeba dispar SAW760]
gi|165905172|gb|EDR30241.1| RNA-dependent RNA polymerase, putative [Entamoeba dispar SAW760]
Length = 1026
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 173/701 (24%), Positives = 287/701 (40%), Gaps = 131/701 (18%)
Query: 469 RRYSFLAFSSNQLRDHSAWFF-SKVGETSVLDIKNWMGEFTA---KNIAKYAARMGLCFS 524
R + FL + +Q R + WF ++ G+T++ ++ + + KN R GL S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSPKIKNAGILLMRTGLFGS 397
Query: 525 STHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQILKLDG-----SPPP 578
+ ATV I P ++ + DI +GY FSDG+G+I LA +V K + S P
Sbjct: 398 DSIATVGIYPQQI-KVIDDITNESGYTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSDEP 456
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMS----LRGSMKKFKSCHTS---LEICSWTRFQPG 631
A+QIR+AG KGV+ D + M+ R S K ++ + L + +F+ G
Sbjct: 457 YAFQIRFAGVKGVLTV-----DRLDMTETIYFRPSQIKIEALPKTIQKLRVIQIPQFRSG 511
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVA--FEVLTASCAEQGNTAAI 689
+N Q+ L L + F + K + ++ F+ T + + I
Sbjct: 512 RMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREIISLFQRFTNNPVIEVALKMI 571
Query: 690 MLSAGF-KPQTEPHLQGM-LTYELGELKECQCFIQ--VSESSL------ENCFSKHGSRF 739
M S G K EP ++ L + L E FI+ + S+ E+ + G F
Sbjct: 572 MASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVF 631
Query: 740 AE--TKKLQVINGFVVIAKNPCLRPGDVRIL-EAVDRPELH---------HLCDCLVFPQ 787
+ + + + + +++ K P PGD +L VD+ L +L D +VF
Sbjct: 632 IQVTSPTITIPSSRLLVVKFPATHPGDFVLLNNVVDKINLEKKKGYERLTYLRDVIVFSS 691
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIP-PSKKSCPP-------------MECTPAEA 833
KG+RP N+ SG DLDGD Y + W+ +P P S PP +E T +
Sbjct: 692 KGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEINSHPPAIYDSEKVHLEKFLEFTDMKR 751
Query: 834 KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
L+ + L +I +H G E L++L + VD+PKTG V
Sbjct: 752 AFLSQLYSKFVLSRISVSH--KESCMNIGMCAEVTKSLSQLISITVDAPKTGAEV----- 804
Query: 894 LKPKKYPDFMEIEEY--QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-----DIH 946
D EI E Q K N + +K ++E I + + + IH
Sbjct: 805 -------DGGEINELVEQVSKINSSNKSILLVLKSFFNEQIPIIMDTFYTELIELVNTIH 857
Query: 947 YDTDLEVPGSV--DFTADARNQKCSYDGQLN-----------------------GLLGQY 981
Y+++ V S+ D AR + ++ ++N G+ +
Sbjct: 858 YNSEF-VSNSILSDVIPFARKTRNEFNNEINWFLKKSVPQRILRGSEPLQLIIGGIFKKG 916
Query: 982 NVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVL 1041
NV+R E W +++ E+ + L YS +RK+ Q + +
Sbjct: 917 NVDRLE----W------EKEEKEINQTLLVIYSNYRKKVEQ-----------EAGRRKIP 955
Query: 1042 YEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWI 1082
+ A YQVTY +++ + +LL+ G + V LL F WI
Sbjct: 956 LRRLCDACYQVTYDKKYYTNN-ELLDCGKNKVVCLL-FPWI 994
>gi|440298585|gb|ELP91216.1| RNA-dependent RNA polymerase, putative [Entamoeba invadens IP1]
Length = 1008
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 148/577 (25%), Positives = 231/577 (40%), Gaps = 110/577 (19%)
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMG----EFTAKNIAKYAARMGLCF 523
RRY F + +Q R + WF + + + N +G KN R GL
Sbjct: 300 NRRYEFFLSNPSQSRSGACWFIDNTDDITRVAAYNSLGIDLKSAKIKNSGILLMRAGLFG 359
Query: 524 SSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS-----PPP 578
S + AT I P ++ GY FSDG+G+I+ LA +V + G P
Sbjct: 360 SDSVATAGIYPQQIKRIEDVTNEGGYTFSDGVGRISLSLASKVFAEYRRCGENVIRVEEP 419
Query: 579 SAYQIRYAGYKGVVA--CWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQ 636
+A+QIR+AG KGVV+ C ++ + ++ F L + +++ G +N Q
Sbjct: 420 AAFQIRFAGVKGVVSVDCLDKSENIYFRPSQIKIEAFPERVQKLRVVQIPQYRSGRMNEQ 479
Query: 637 IITLLSTLNV---------------------SDEIFWTVQA-----SMASKLNLMLVA-- 668
+ L L + +DE+ Q ++A L +++ A
Sbjct: 480 LALGLEYLEIPIPNFIQCAKEYLRKYFTSIPNDEVVRLFQKNAKNPTVAIALKMVMAAGR 539
Query: 669 -SDVAFEVLTASCAEQGNTAAIMLS-----AGFKPQTEPHLQGMLTYELGELKECQCFIQ 722
S + E + + A MLS F L G++ E G L+E Q FIQ
Sbjct: 540 DSKIFEEPFVKANSLVLRMA--MLSEKSDFIKFDIDNSAFLMGVMD-ETGILEEGQVFIQ 596
Query: 723 VSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV----------D 772
+S +S+ F + +L + K P PGD +L V
Sbjct: 597 LSSNSV----------FVPSSRLLAV-------KFPATHPGDFLLLRNVCENVLFERKRG 639
Query: 773 RPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP-SKKSCPP----ME 827
L +L D +VF KG RP N+ +G DLDGD Y V W+ +P KKS PP E
Sbjct: 640 YERLAYLKDVIVFSSKGYRPDPNKMAGGDLDGDEYLVIWNPLFLPKLGKKSHPPANYDFE 699
Query: 828 CTPAEAKPLTCHVNHQNLGQICNAHVVHADRS-------EYGAFDENCILLAKLAATAVD 880
T E + H + Q+ + +V+ + G DE L++L + AVD
Sbjct: 700 ETHLERFLEYNDMKHAFVSQLYSKYVLAQISTCHKKACMSLGMQDEISKALSQLISVAVD 759
Query: 881 SPKTGKIVTMPSHLKPKKYPDFMEIEEY-QTYKSNKILGR-LYRQIKGAYDENIS-VSSE 937
+PKTG + D EI E + + KI+G+ + +K +++ + V
Sbjct: 760 APKTGAEI------------DSGEINELVERVREQKIVGQSVLIALKDFFNQQVPLVLDR 807
Query: 938 VDINPVDI----HYDT----DLEVPGSVDFTADARNQ 966
+DI HYDT D +P + F RN+
Sbjct: 808 FHAELMDIVNTLHYDTIFLSDNIIPELIPFVRRTRNE 844
>gi|407036402|gb|EKE38145.1| RNA-directed RNA polymerase, putative [Entamoeba nuttalli P19]
Length = 1026
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 172/704 (24%), Positives = 286/704 (40%), Gaps = 135/704 (19%)
Query: 469 RRYSFLAFSSNQLRDHSAWFF-SKVGETSVLDIKNWMGEFTA---KNIAKYAARMGLCFS 524
R + FL + +Q R + WF ++ G+T++ ++ + + KN R GL S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGVDLKSPKIKNAGILLMRTGLFGS 397
Query: 525 STHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQILKLDG-----SPPP 578
+ ATV I P ++ + DI NGY FSDG+G+I LA +V K + S P
Sbjct: 398 DSIATVGIYPQQI-KVIDDITNENGYTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSDEP 456
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMS----LRGSMKKFKSCHTS---LEICSWTRFQPG 631
A+QIR+AG KGV+ D + M+ R S K ++ + L + +F+ G
Sbjct: 457 YAFQIRFAGVKGVLTV-----DRLDMTENIYFRPSQIKIEALPKTIQKLRVIQIPQFRSG 511
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVA--FEVLTASCAEQGNTAAI 689
+N Q+ L L + F + K + ++ F+ T + + I
Sbjct: 512 RMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREIISLFQRFTNNPVIEVALKII 571
Query: 690 MLSAGF-KPQTEPHLQGM-LTYELGELKECQCFIQ--VSESSL------ENCFSKHGSRF 739
M S G K EP ++ L + L E FI+ + S+ E+ + G F
Sbjct: 572 MASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVF 631
Query: 740 AE--TKKLQVINGFVVIAKNPCLRPGDVRILE-AVDR---------PELHHLCDCLVFPQ 787
+ T + + + +++ K P PGD +L VD+ L +L D +VF
Sbjct: 632 IQVTTPTVTIPSSRLLVVKFPATHPGDFVLLNNVVDKINSEKKKGFERLTYLRDVIVFSS 691
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIP-PSKKSCPP-------------MECTPAEA 833
KG+RP N+ SG DLDGD Y + W+ +P P S P +E T +
Sbjct: 692 KGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEIHSHAPATYDSEKVHLEKFLEFTDMKR 751
Query: 834 KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
L+ + L +I +H G E L++L + VD+PKTG V
Sbjct: 752 AFLSQLYSKFVLSRISVSH--KESCMNIGMCAEVTKSLSQLISITVDAPKTGAEV----- 804
Query: 894 LKPKKYPDFMEIEEY--QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV-----DIH 946
D EI E Q K+N + +K ++E I + + + IH
Sbjct: 805 -------DGGEINELVEQVSKTNNSNKSILLVLKSFFNEQIPIIMDTFYTELIELVNTIH 857
Query: 947 YD----TDLEVPGSVDFTADARNQKCSYDGQLN-----------------------GLLG 979
Y+ +D +P + F RN+ ++ ++N G+
Sbjct: 858 YNSEFISDSILPDVIPFARKTRNE---FNNEINWFLKKSIPQRILRGSEPLQLIIGGVFK 914
Query: 980 QYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKN 1039
+ NV+R E W +++ E+ + L YS +RK+ Q +
Sbjct: 915 KGNVDRLE----W------EKEEKEINQTLLVIYSNYRKKVEQ-----------EAGRRK 953
Query: 1040 VLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIA 1083
+ + YQVTY +++ + +LL+ G + V LL F W+
Sbjct: 954 IPLRRLCDVCYQVTYDKKYYTNN-ELLDCGKNKVVCLL-FPWVV 995
>gi|405974294|gb|EKC38950.1| Putative RNA-dependent RNA polymerase 1 [Crassostrea gigas]
Length = 299
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 137/262 (52%), Gaps = 32/262 (12%)
Query: 377 NEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-ADRFLRVTFMDEGLQTMNANVLSYYVA 435
NE PKN VR V+TP++ + L +K V R LR+ D Y+
Sbjct: 18 NEIPKNY---TSVRMAVLTPSR-FILLPNKPVHLTRILRLYNND------------YF-- 59
Query: 436 PIVKDITSNSFSQKTGV--------FKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
I+ D + F + G+ + +K +GF + R Y FL S+++LR+HS W
Sbjct: 60 -ILLDYRDDDFDKVCGIHPYGSMKIVQDMKRFFINGFEIHDRHYDFLGCSNSELRNHSFW 118
Query: 488 FFSKVGETSVLDIKNWMGEFTAKN-IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKR 546
FFS + I+ G+ + + +A Y +++GLCFS + +T+ + + D++R
Sbjct: 119 FFSSYDGITAEFIRQNCGDLSMERCVASYVSKIGLCFSPSLSTLTMEEHQEVRFEEDVRR 178
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR-MS 605
NG F+DGIGKI+ LA +VA+ K++ + PS +QI Y G KG++A P+ + +
Sbjct: 179 NGLCFTDGIGKISRRLAAKVAK--KMNLNTVPSVFQICYGGCKGMIALDPSLGENREILV 236
Query: 606 LRGSMKKFKSCHTSLEICSWTR 627
+R SMKKF+S SLE+ +R
Sbjct: 237 IRHSMKKFESSSKSLEVLQVSR 258
>gi|361130100|gb|EHL01954.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 263
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 126/284 (44%), Gaps = 62/284 (21%)
Query: 539 HELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL---DGSPPPSAYQIRYAGYKGVVACW 595
++PDI+ YVF+DG G I+ LA E++++L++ + PS +QIRY GYKGV+
Sbjct: 9 QDIPDIEAQDYVFTDGCGLISKHLARELSRVLRVAFRNTRYTPSVFQIRYRGYKGVLMLD 68
Query: 596 PAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLN--VSDEIFWT 653
P M+K S L + L T+ TL V+ E
Sbjct: 69 PG------------MEKQTSAFRFLTYTNKPELAEKVLIDGFETVQPTLTKLVNSEYDRM 116
Query: 654 VQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE 713
+ + +++ S + F + A G
Sbjct: 117 INKRDEQRCRILIPKSRLLFGICDA--------------------------------WGV 144
Query: 714 LKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDR 773
LKE +C ++V+ ++ G V++ +NPCL PGD++ +AV+R
Sbjct: 145 LKEGECAVKVTMDGDGQPYTLKGMD-------------VLVTRNPCLHPGDLQKFKAVER 191
Query: 774 PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
EL HL DC+VFP +G RP + SG DLDGD ++V WD +LIP
Sbjct: 192 DELAHLVDCIVFPTRGARPAADLMSGGDLDGDTFFVCWDSDLIP 235
>gi|15224523|ref|NP_178605.1| uncharacterized protein [Arabidopsis thaliana]
gi|4914363|gb|AAD32900.1| hypothetical protein [Arabidopsis thaliana]
gi|330250827|gb|AEC05921.1| uncharacterized protein [Arabidopsis thaliana]
Length = 211
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 83/138 (60%), Gaps = 11/138 (7%)
Query: 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGG-VWRCRLKTSCTPSESYPNFFIENVAEV 64
K V +QV++ GF K +L YLEN+VG VWRCRLKTS TP SYPNF I + + +
Sbjct: 2 KNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNI 61
Query: 65 QKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGT 124
K D YE+V PHAFVH + MDAAE +L L G+ LK SL ENP+ LN
Sbjct: 62 PKFDCYERVVPHAFVHCDAHKSL---MDAAEQSKLILGGQPLKFSLSSENPYTLN----- 113
Query: 125 SAPLKLPDVYVEIGSLVT 142
P KL V +EIG+L +
Sbjct: 114 --PYKLTGVSLEIGTLAS 129
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 36/46 (78%)
Query: 219 LASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQC 264
LASSPR+ YRTA DDI DLLDD+DPWIRTTDF+ SGAI +C
Sbjct: 127 LASSPRVWYRTADDDIYETSAVDLLDDNDPWIRTTDFTQSGAIRRC 172
>gi|290976086|ref|XP_002670772.1| predicted protein [Naegleria gruberi]
gi|284084334|gb|EFC38028.1| predicted protein [Naegleria gruberi]
Length = 1384
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/399 (28%), Positives = 168/399 (42%), Gaps = 107/399 (26%)
Query: 496 SVLDIKNWM-------GEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG 548
S+ D+K W + N K + R+ L + T+ + V I G
Sbjct: 324 SIHDVKTWAIPDTLNRDLYFENNKLKQSLRLALFNTPVIPTIGVSEYTV------INDEG 377
Query: 549 YVFSDGIGKITPDLAMEVAQILK----------------------------LDGSPPPSA 580
+F+DG G I+ +LAM+V +I++ L P A
Sbjct: 378 -LFTDGCGFISLELAMKVYEIVRKSKNLLKYQSKQSMDEDGIYEENDGVEFLVNEYLPCA 436
Query: 581 YQIRYAGYKGVVACWPAKDD--GIRMSLRGSMKKFKSCHTSLEI------------CSWT 626
YQIR+ G KG+V P + G + LR SM K + +T +I C +
Sbjct: 437 YQIRFRGAKGMVYIHPNAEKVYGHHLVLRKSMMKIEHPNTDDDIINNLCIVGYSSPCDFA 496
Query: 627 RFQPGFLNRQIITLLSTLNVSDE-----IFWTVQASMASKL-NLM---LVASDVAFEVLT 677
R +N I+ +L DE IF + + NLM + SD+ + +
Sbjct: 497 R-----INSTIMHILE--GCEDETKQGKIFEILNQKACKHIENLMKNYISESDI--DKVF 547
Query: 678 ASCAEQGNTAAIMLSAGFKPQ-----TEPHLQGMLTYEL---------------GELKEC 717
+QG+ A++ + + K + T P+ +L+ + G LKE
Sbjct: 548 DQYVKQGDYASLNVLSILKSKKLAFLTGPYRNQILSLRIPCYSSRRLYGIADPFGVLKEG 607
Query: 718 QCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELH 777
Q FIQVS + KK VI V++ K PCL GD+R LEAV+ PEL+
Sbjct: 608 QIFIQVSS-------------LNDPKKKNVIENTVIVTKEPCLHRGDLRKLEAVNIPELN 654
Query: 778 HLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
L D +VFP KG RP TN +GSDLDGD Y+ WD L+
Sbjct: 655 FLYDVIVFPTKGSRPITNMIAGSDLDGDQYFACWDNELV 693
>gi|268565349|ref|XP_002639417.1| Hypothetical protein CBG04006 [Caenorhabditis briggsae]
Length = 797
Score = 114 bits (284), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 188/432 (43%), Gaps = 94/432 (21%)
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++ K P + GD+R+ EAVD PELHHL D +VFPQ G R +E +GSDLDGD Y V WD
Sbjct: 1 MVTKFPTMCAGDIRMYEAVDIPELHHLTDVIVFPQSGPRSQPDEMAGSDLDGDEYAVIWD 60
Query: 813 ENLIPPSKKSCPPME-CTPAEAKPLT-------------CHVNHQNLGQICNAHVVHADR 858
L +K+ P C+ + K T + +++G H+ +D
Sbjct: 61 PILF--FQKNAPAFGYCSEKKNKQFTLGEMDHKMNDFFALSMRQEDVGVTAINHLHQSD- 117
Query: 859 SEYGAFDENCILLAKLAATAVDSPKTGK---IVTMPSHLKP-----------KKYPDFME 904
++G + L + A A+D K+G +T + P ++ PDF +
Sbjct: 118 -QFGIDSDVANSLVEKNAMALDFAKSGDPPLPLTNEGRINPETGLWEPPERSERRPDFSQ 176
Query: 905 IEEY--QTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTAD 962
+Y S+++LG L+R+++ D +S SSE + PV I D L G +
Sbjct: 177 SRHAGSASYASSRLLGTLHRELRSINDVVMS-SSEKQV-PVVI--DDLLIWEGWEKHKDN 232
Query: 963 ARNQKCSYDGQLNGLLGQYNV---------------NRKEFRHIWSMPKYNSRKQGELQE 1007
A Q Y+GQL ++ + V NR+ R M YN+ + ++
Sbjct: 233 ATLQMIRYNGQLRSIMETFGVATEAEVFSGCFRDIRNRQSEREQDDMSMYNT--ESVIEG 290
Query: 1008 RLKHSYSAFRKEFRQVF----------------EKMNSDFELSDNEKNVLYE------QK 1045
++ Y +RKEF + F E + ++E D + V + K
Sbjct: 291 QMTDLYKKYRKEFFEEFVTPEARMPAYMRLTEPENVRRNYEEVDVLRRVCKQPSDAMMAK 350
Query: 1046 ASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIK-CQEMANIGKSK 1104
A A+Y+V Y +GS R LSFAWIA D L ++ K EM N+
Sbjct: 351 AIAYYRVCYENAM---------KGSDRK---LSFAWIAYDILNFVRGKNIMEMENV---- 394
Query: 1105 PVNNLARYVADR 1116
PV L ++ A R
Sbjct: 395 PVRRLPQFQAIR 406
>gi|402580635|gb|EJW74584.1| hypothetical protein WUBG_14509 [Wuchereria bancrofti]
Length = 168
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 26/172 (15%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G+L+ Q F+Q + + S+ ++ ++ G V++ KNPC+ GDVR+ E
Sbjct: 7 ETGQLQWGQIFVQCTRNIWLKTPSQSAAKI-------ILKGKVMLTKNPCIVAGDVRVFE 59
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT 829
AVD PELHHL D +VFPQ G RPH +E +GSDLDGD Y V WD+ LI + + PP++ T
Sbjct: 60 AVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLI--FEHNEPPLDFT 117
Query: 830 PAEA---------------KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDE 866
+ + K ++ ++G I NA +V+AD YG E
Sbjct: 118 KSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSISNAFLVNADL--YGITSE 167
>gi|170094614|ref|XP_001878528.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164646982|gb|EDR11227.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1051
Score = 111 bits (277), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 137/284 (48%), Gaps = 49/284 (17%)
Query: 406 KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
K D F+RV F DE + N +D+ S + +RV +L G
Sbjct: 242 KGCDDNFIRVDFRDEDRSSYKRN----------QDVDDMSV-----LRERVGDVLKQGIM 286
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKV---GET-SVLDIKNWMGEFT--AKNIAKYAARM 519
+ GR + FLA+S++ LR+H+ WF S GE + + +G+F+ A+ +KYAAR+
Sbjct: 287 IAGRHFQFLAYSTSSLREHAVWFMSSFESGGEMITPQKVVRDLGDFSALAQQPSKYAARI 346
Query: 520 GLCFSSTHATVEIPPTE--------------VDHELPDI--KRNGYVFSDGIGKITPDLA 563
FS+T +V I E + ++ DI ++ + F+DG+G I+ L
Sbjct: 347 AQKFSATDPSVHIHGHEWERVDDIEYIEERTIRNDDGDIETRKTVHCFTDGVGTISESLG 406
Query: 564 MEVAQILK------LDGSPPPSAYQIRYAGYKGVVACWPAKD---DGIRMSLRGSMKKFK 614
E+ + L+ + +P PSAYQIR+ G KGVV D GIRM LR SM KF
Sbjct: 407 QEIFETLRNNEGRLEEKAPLPSAYQIRFMGSKGVVVVDKQLDKNSSGIRMRLRPSMIKFP 466
Query: 615 SCHTS--LEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQ 655
S S LEI R+ + +LNR ++ L L V + F +Q
Sbjct: 467 SLAQSEPLEISEAFRYPKLCYLNRPLVMFLEDLGVRLQTFLDLQ 510
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 32/232 (13%)
Query: 718 QCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE-- 775
Q ++ E + C K G K+ ++G I+++P PGDV+ + + +P
Sbjct: 617 QNVYELPEGHIYACVQKAGD-----KEPTWLSGSCSISRSPVAHPGDVQRVRCIGKPPED 671
Query: 776 ----LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL------IPPSKKSCPP 825
HL + +V P G R + G DLDGD+Y V E L +P S S PP
Sbjct: 672 KLCLFSHLVNVVVLPSVGKRSLASCLGGGDLDGDIYSVIMLEPLLPTQMVVPASYDSLPP 731
Query: 826 MECTPAEA-KPLTC-----HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAV 879
P ++ + C +++ LG + N +V AD+S+ G FD++C LA L + AV
Sbjct: 732 RALPPGQSIEEAVCDFIVEYIHSDVLGLLSNRLLVIADQSKEGVFDQDCEHLAVLCSQAV 791
Query: 880 DSPKTGKIVTMPSHLKPKKY----PDFMEIE-----EYQTYKSNKILGRLYR 922
D PK G V + P PD+ E + YKS + LG ++R
Sbjct: 792 DYPKQGNPVDLSGGALPHPLIRCKPDWQSAEINAPRQTDYYKSTRALGVMFR 843
>gi|406693965|gb|EKC97304.1| hypothetical protein A1Q2_08384 [Trichosporon asahii var. asahii
CBS 8904]
Length = 945
Score = 111 bits (277), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 145/628 (23%), Positives = 250/628 (39%), Gaps = 142/628 (22%)
Query: 303 GVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR------EVIVTALKHIYSYKRP- 355
G F + +L+ ++ G++ ++++ L C R E L+ +Y+ +R
Sbjct: 213 GYGFNLRYLLEGLITNGVVIPSEITE----LAECLKRHCEDDDEKAARVLRSLYNEERVR 268
Query: 356 ------VFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVA 409
+ D E V CL+ +L P ++ + R ++ +
Sbjct: 269 NIDAVVMADLDENSVVVYHCLVTPTRLVLLPPGVETSTDAIRNHLS------------FS 316
Query: 410 DRFLRVTFMDE--GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLC 467
DRFLRV F+DE G Q +N VL ++ G RV+ + +G N+
Sbjct: 317 DRFLRVEFIDEEDGFQ-VNPTVLE-----------ADQMEPAEGTVARVRRAMMNGLNIA 364
Query: 468 GRRYSFLAFSSNQLRDHSAWFFSK--VGETSVLDIKNWMGEFTAKN--IAKYAARMGLCF 523
GR Y FLA+ + R S WF ++ +V +K +G ++ +A++ ++M +
Sbjct: 365 GRHYVFLAYGATSARQQSCWFLAEDPAKNLTVESVKRNLGLDLLRDTTVARFVSKMAIIL 424
Query: 524 SST-HATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
HA D + GY SD G SA +
Sbjct: 425 PDILHA--------------DQQEKGYCESDA-------------------GRTEISAVE 451
Query: 583 IRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEI-CSWTRFQPGFLNRQIITLL 641
+ + ++ + R S K+++ ++ + F+ L+RQ + ++
Sbjct: 452 DKES----------MENISEEVYFRQSQVKYRTGSKTMAYGLNIVEFKRAHLSRQAVVIM 501
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAF---EVLTASCAEQGNTAAIMLSAGFKPQ 698
+ L V D +F ++ + +L S A E L+ + + S GFK
Sbjct: 502 NHLGVPDAVFESLFILAMREARGLLKRSATAGLLKEDLSLVSQHTHFPVSELYSFGFK-- 559
Query: 699 TEPHL----QGMLTYELGELKECQCFIQVSES-------SLENCFSKHGSRFAE------ 741
T+P L + L + + +QV +S N S+H F +
Sbjct: 560 TDPMLLDICRATAVRLLSDYRH-NARLQVDQSVKLMGIADELNVLSEH-EVFCQYDDPDS 617
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSD 801
+ V+ G I ++P L PGD++++ AVDRPELHHL + +VF +G S +
Sbjct: 618 SDGPNVVLGACAIMRDPVLHPGDIQLVHAVDRPELHHLRNVIVFSVQG-----QPLSRGN 672
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEAK--PLTCHVNHQNLG------------- 846
L GD Y + WD LIPP + P TP E P + +++G
Sbjct: 673 LAGDQYSLIWDPVLIPPEQ--VEPSSYTPPEPATVPKVADKHLRDVGSERAELTQKLMAI 730
Query: 847 --QICNAHVVHADRSEYGAFDENCILLA 872
Q+C+AH+ ADR +G ENC +LA
Sbjct: 731 VEQLCDAHLAIADR--FGPQSENCKMLA 756
>gi|402468935|gb|EJW04011.1| hypothetical protein EDEG_01705 [Edhazardia aedis USNM 41457]
Length = 1964
Score = 109 bits (273), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 98/198 (49%), Gaps = 40/198 (20%)
Query: 500 IKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKI 558
I+ W+G F T KNI KYA R+G SST T+EI + D NGY F+DGIG+I
Sbjct: 1262 IRQWLGTFSTIKNIGKYAIRLGQALSSTIGTIEIDNLVC---IDDKFFNGYCFTDGIGRI 1318
Query: 559 TPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSL------------ 606
A +V + L + PSA+QIR GYKGVV+ + K++ L
Sbjct: 1319 DYSTAKKVCECLGIIN--IPSAFQIRIGGYKGVVSLYKLKNNNEEKKLKNIIYSSNTNTN 1376
Query: 607 ----------------------RGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTL 644
R SMKKF+S H +LE+ ++++ P +LNRQII +L L
Sbjct: 1377 LNSTNIDTNSNISLVQSNSLYVRNSMKKFESTHRTLEVVAFSQNIPCYLNRQIILILCAL 1436
Query: 645 NVSDEIFWTVQASMASKL 662
++D I +Q + K+
Sbjct: 1437 GINDNIIIEMQDNYIEKI 1454
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 35/176 (19%)
Query: 330 FFDLLR-CQPREVIVTALKHIYSYKRPVFDA-YEKLKDVQECLIKN--PKLNEGPKNIDD 385
FF+L+ CQ + + + + +F+ YE + KN N+ NI
Sbjct: 1026 FFNLINTCQNSQNTINLYNNDTDFNTNIFNKNYETEVTIPVSTDKNMHTNTNKSASNISF 1085
Query: 386 IA----EVRRLVITPTKAYWFLESKDVADR---------FLRVTFMDEGLQTMNANVLSY 432
A R +++TP + + +K + +R F+RV+F DE L +
Sbjct: 1086 WATQNISTRSIIVTPLQQIYTYPTKTLGNRVLRTFNADFFIRVSFKDENLTS-------- 1137
Query: 433 YVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWF 488
V+ SN F +F++++ I+ +GF + R+Y FLA S++QL+ HSAWF
Sbjct: 1138 -----VRKYDSNKF-----IFEKIRKIMKEGFLIGNRKYFFLAMSASQLKTHSAWF 1183
>gi|302698389|ref|XP_003038873.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
gi|300112570|gb|EFJ03971.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
Length = 984
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 115/489 (23%), Positives = 213/489 (43%), Gaps = 89/489 (18%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV+F++EG L Y +++ +F + +R+ +L G ++ G
Sbjct: 442 DCFLRVSFVEEGR-------LQYRFD---REVDGRTF-----IRERIGPLLKKGLHIAGH 486
Query: 470 RYSFLAFSSNQLRDHSAWFF------SKVGETSVLDIKNWMGEFTAKN----IAKYAARM 519
++ FLA+S + L++H+ WF + + + I +G+F+ A+YAAR+
Sbjct: 487 KFEFLAYSQSALKEHAVWFVKPFRPDGQRADVNAATIIAGIGDFSTSKDRFCPARYAARL 546
Query: 520 GLCFSSTHATVEIPPTEVD-HELPDIKRNGYVFSDGIGKITPDLAMEVAQILK------L 572
F++T A+V + E+ H+ Y F+DG+G ++ ++A + L+
Sbjct: 547 SQAFTATDASVFVEAEEIGYHDDISTSDGAYHFTDGVGTMSKEMARDTWTELRRTRKRAR 606
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEIC-SWTRFQP 630
P+++Q+R G KG+++ K G + LR SM KF++ + +LEI ++ R
Sbjct: 607 KSKGTPASFQVRLMGSKGMLSV-DYKLRGRAVCLRPSMIKFEAPDSLNLEIARAFDRPGK 665
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA-SCAEQGNTAAI 689
+LNR +I LL L V E F Q + + + A +L A ++
Sbjct: 666 YYLNRPLIMLLEGLGVPYETFLKYQDLAVRDAHRATESLEHAARMLEAFGLGTSFRLPSV 725
Query: 690 MLSAGFKPQTEPHLQG------MLTYELGELKEC----------QCFIQVSESSLENCFS 733
+L+ + HL G ML + + + + V + + +
Sbjct: 726 LLN--LEKLGIDHLPGDAFYDRMLEFAINHVLRVLKNHARIPIPGAYTLVGVADVHRYLA 783
Query: 734 KHGSRFA-----ETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL------HHLCDC 782
+ G FA ++ +++ + G ++I+++P + PGDV+++ A+ RP L +
Sbjct: 784 E-GEVFACVKEVDSNRIEYLEGDILISRSPTIHPGDVQVVRAIGRPPAGSPFAQEPLANT 842
Query: 783 LVFPQK--------------------GDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
+VF K G RP + G DLDGD+Y + + P +
Sbjct: 843 VVFSVKGMLLGPFQARHEQHLTVSHSGSRPLPSMLGGGDLDGDVYNLICLDTTHPEFR-- 900
Query: 823 CPPMECTPA 831
P C PA
Sbjct: 901 -PARTCDPA 908
>gi|343426952|emb|CBQ70480.1| related to RNA-directed RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1037
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 145/543 (26%), Positives = 224/543 (41%), Gaps = 84/543 (15%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAK 514
RV IL +G + GRR+ LA+SS+ + H+ WF T LD T + +
Sbjct: 198 RVLDILKNGIIVAGRRFQLLAWSSSSMSSHTVWFV-----TPFLDA-------TGRLVDA 245
Query: 515 YAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL---- 570
+ R L + + P D NG +DG+G+I+P L +V +
Sbjct: 246 NSVRKSL--GNFKDVIRKPAMYAD--------NGQDHTDGVGQISPALMADVWESYLVNH 295
Query: 571 ------KLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEIC- 623
KL + PSA QIR G KG+++ P + G + +R SM KF S H LE+
Sbjct: 296 GEFRKRKLLKASAPSAIQIRLGGSKGMLSLNP-RLTGKVLYIRPSMSKFDSQHQDLEVAN 354
Query: 624 SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQ 683
S +R LNR ++ L V F +Q S++ D +++A
Sbjct: 355 SSSRCLTAKLNRPLVNALDDRGVHASAFIAIQDEAISQIGRARHNFDETARLVSAFSFGT 414
Query: 684 GNTAAIMLSAGFK-----PQTEPH------LQGMLTYELGELKECQCFIQVSESSL---- 728
G I+ K T+P + + LG++K + I V+ +L
Sbjct: 415 GCNLRILFEKVHKVGLGAASTDPESFFLVLAKAVTAAALGDMKR-KARIPVAGVTLLGIA 473
Query: 729 -ENCFSKHGSRFAETKKL-------QVINGFVVIAKNPCLRPGDVRILEAVDRPELH--- 777
E + K G F + + + +++ G +I ++P + P D+ +++ P H
Sbjct: 474 DEFGYLKEGEVFVQVETVDFGQVSRRILTGRKLIGRSPTIDPSDITMVQCKKPPPGHPLL 533
Query: 778 HLCDCLVFPQ-KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
L + +VF +P G DLDGDLY + DE L PP+ + EAK L
Sbjct: 534 QLRNVVVFNTCTRLQPLPRRLGGGDLDGDLYTIYEDERLFPPTPQPEAVFHAK-VEAKEL 592
Query: 837 TCHVNHQNL-------------GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
+ N +L G + + H+ +D SE GA D C LAKL + A D K
Sbjct: 593 SHPCNAHDLADFFADFMLNDFVGLVSSLHLRISDASEAGAADPRCKTLAKLHSQATDFRK 652
Query: 884 TGKIVTMPSHLKPKK---YPDFMEIEEYQ----TYKSNKILGRLYRQIKGAYDENISVSS 936
TG + S L P PDF+ E + Y S + LG LYR + + S+
Sbjct: 653 TG-VAVKRSQLPPMHEPIVPDFLAQSEKREGKLVYSSRRALGYLYRSVSWGDTDTPSLDE 711
Query: 937 EVD 939
D
Sbjct: 712 NTD 714
>gi|401885543|gb|EJT49653.1| hypothetical protein A1Q1_01210 [Trichosporon asahii var. asahii
CBS 2479]
Length = 957
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 130/517 (25%), Positives = 212/517 (41%), Gaps = 129/517 (24%)
Query: 409 ADRFLRVTFMDE--GLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
+DRFLRV F+DE G Q +N VL ++ G RV+ + +G N+
Sbjct: 328 SDRFLRVEFIDEEDGFQ-VNPTVLE-----------ADQMEPAEGTVARVRRAMMNGLNI 375
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSK--VGETSVLDIKNWMGEFTAKN--IAKYAARMGLC 522
GR Y FLA+ + R S WF ++ +V +K +G ++ +A++ ++M +
Sbjct: 376 AGRHYVFLAYGATSARQQSCWFLAEDPAKNLTVESVKRNLGLDLLRDTTVARFVSKMAII 435
Query: 523 FSSTHATVEIPPTEVDHELPDI-----KRNGYVFSDG----IGKITPDLAME-VAQILKL 572
LPDI + GY SD I + +ME V++ +
Sbjct: 436 ------------------LPDILHADQQEKGYCESDAGRTEISAVEDKESMENVSEEVYF 477
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGF 632
S Q++Y + M+ ++ +FK H
Sbjct: 478 RQS------QVKY------------RTGSKTMAYGLNIVEFKRAH--------------- 504
Query: 633 LNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAF---EVLTASCAEQGNTAAI 689
L+RQ + +++ L V D +F ++ + +L S A E L+ +
Sbjct: 505 LSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRSATAGLLKEGLSLVSQHTHFPVSE 564
Query: 690 MLSAGFKPQTEPHL----QGMLTYELGELKECQCFIQVSES-------SLENCFSKHGSR 738
+ S GFK T+P L + L + + +QV +S N S+H
Sbjct: 565 LYSFGFK--TDPMLLDICRATAVRLLSDYRH-NARLQVDQSVKLMGIADELNVLSEH-EV 620
Query: 739 FAE------TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRP 792
F + + V+ G I ++P L PGD++++ AVDRPELHHL + +VF +G
Sbjct: 621 FCQYDDPDSSDGPNVVLGACAIMRDPVLHPGDIQLVHAVDRPELHHLRNVIVFSVQG--- 677
Query: 793 HTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ--NLG---- 846
S +L GD Y + WD LIPP + P TP E ++ + ++G
Sbjct: 678 --QPLSRGNLAGDQYSLIWDPVLIPPEQ--VEPSSYTPPEPATVSKVTDKHFPDVGSERA 733
Query: 847 -----------QICNAHVVHADRSEYGAFDENCILLA 872
Q+C+AH+ ADR +G ENC +LA
Sbjct: 734 ELTQKLMAIVEQLCDAHLAIADR--FGPQSENCKMLA 768
>gi|403358446|gb|EJY78873.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1379
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 63/353 (17%)
Query: 354 RPVFDAYEKL-KDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADR- 411
R + +AY L K+ E ++ + +N +D+ + RR+ TPT +F ++ +R
Sbjct: 419 RTLLEAYRYLEKNSGEITLE---IQNETENDNDLRQ-RRIYQTPTLTLFFANQREQTNRV 474
Query: 412 ----------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
F R+ +++ LQ + S QK + + +K ++
Sbjct: 475 IRQFKKYKDNFFRLVLVNDQLQKFHFG----------------SMKQKE-MLQHMKDLMK 517
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIK-----NWMGEFTAKN-IAKY 515
+ L +S++QL++HS W V TS+ +I+ + +G FT + K
Sbjct: 518 QELYIGDSLAQVLNYSNSQLKNHSVWM---VCSTSIPEIQPNAIISRLGTFTNEGGNLKM 574
Query: 516 AARMGLCFSSTHATVEIPP---TEVDHEL--------------PDIKRNGYVFSDGIGKI 558
AR G CFS+T ++ P EV ++ PD + YVF+DG G I
Sbjct: 575 FARRGQCFSTTKYVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDGCGNI 634
Query: 559 TPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT 618
+ LA E+AQ +L SA+Q+R G KGV+ P D G ++ LR S KF +
Sbjct: 635 SELLASEIAQSHQL---MKCSAFQVRIGGVKGVLMLKPDLD-GRKVQLRKSQIKFACENW 690
Query: 619 SLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDV 671
LE+ + F G+LNRQ+I LLS L V D +F + + LN+ V ++
Sbjct: 691 GLEVIRCSTFSQGYLNRQVILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNL 743
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 39/253 (15%)
Query: 710 ELGELKECQCFIQVSESS----------------LENCFSKHGSRFAETKKL--QVINGF 751
E G L E + +++++ S +EN K SR AE Q+I G
Sbjct: 867 ETGTLDEGEIYLKINRGSYDYDQIQEKLVDEYDEIENADGKK-SRLAEINTWLDQIIEGD 925
Query: 752 VVIAKNPCLRPGDVRILEAV-DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVT 810
V++ KNPC PGD+R L AV + HL + +VF KG RP ++ SG DLDGD+Y
Sbjct: 926 VIVTKNPCSHPGDIRKLRAVGEHSTFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCM 985
Query: 811 WDENLIPPSKKSCPPM------ECTPAEAKPLTC------HVNHQNLGQICNAHVVHADR 858
WDE+L+ +K P E +++ T + NLG + + H+ +D+
Sbjct: 986 WDESLVNALQKIEKPAVYKKFEESIKTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQ 1045
Query: 859 -SEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH----LKPKKYPDFMEIEEY--QTY 911
G +++ C+ L+ + AVD K GK V + K ++PD+ME + +T
Sbjct: 1046 LGVEGPYNKECVELSWYISIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTV 1105
Query: 912 KSNKILGRLYRQI 924
+S ILG+LYR +
Sbjct: 1106 ESPLILGQLYRAV 1118
>gi|397614211|gb|EJK62661.1| hypothetical protein THAOC_16717 [Thalassiosira oceanica]
Length = 540
Score = 106 bits (264), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 114/241 (47%), Gaps = 37/241 (15%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+E Q FIQVS+ + EN +VI G V++AK+P + PGD+R+LE
Sbjct: 18 ETGLLEENQIFIQVSKHTKEN----------NKPAYEVITGRVMVAKHPVIHPGDLRMLE 67
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP------SKKSC 823
AVD PEL + + ++F Q G RP TN SGSDLDGD + + WD L P S S
Sbjct: 68 AVDLPELRGVKNVVLFSQHGHRPVTNMMSGSDLDGDEFAICWDRRLFLPKTVEAMSYDSH 127
Query: 824 PPME--------------CTPAEA--KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDEN 867
P E T EA + H + NLG+I + HA + E
Sbjct: 128 SPDETGLLPLSVLEEEFGVTTNEALVRHFINHAKNDNLGKISMLWLDHAIDKGSASCSE- 186
Query: 868 CILLAKLAATAVDSPKTGKIVTMPSHLK-PKKYPDFMEIEEYQ---TYKSNKILGRLYRQ 923
C+ LA L + +VD PK+ +P L +P E+ ++ I+GRLY
Sbjct: 187 CLELAALHSISVDFPKSSIPAKLPDRLVLGSTFPRAHWREKAGGSPSFHCRSIVGRLYDN 246
Query: 924 I 924
+
Sbjct: 247 V 247
>gi|241083169|ref|XP_002409050.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492623|gb|EEC02264.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 167
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 16/169 (9%)
Query: 697 PQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAK 756
P T ++ G+L E L+ + F+Q +E L++ + + TK ++ G V++ K
Sbjct: 3 PNTGRNMLGVLD-ETQSLEYGEVFVQFTEHQLDDGSCEDDPKVPTTK---ILVGAVLVTK 58
Query: 757 NPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
PCL PGDVR AVD P LHH+ DC+VFP KG RPH NE +GSDLDGD Y V W+++L+
Sbjct: 59 CPCLHPGDVRKFAAVDIPGLHHVKDCIVFPAKGPRPHPNEMAGSDLDGDEYIVIWEKDLL 118
Query: 817 PPSKKSCPPMECTPAEAKP------------LTCHVNHQNLGQICNAHV 853
P + C + P + ++ + N+G + NAH+
Sbjct: 119 FPGNNQPAMVFCDHSSVVPSDDSLEDGMVKFICNYIKNDNVGILSNAHL 167
>gi|15419599|gb|AAK97084.1|AF293414_1 RNA-dependent RNA-polymerase [Giardia intestinalis]
Length = 1377
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 186/460 (40%), Gaps = 131/460 (28%)
Query: 502 NWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPD 561
NW+G+ K R GLCF + T+++ +V + D + NGYVF+DG G+I+ D
Sbjct: 259 NWLGDIKEVQACKICTRRGLCFGKSLPTIKVREEDV-QIVSDKEYNGYVFTDGAGEISYD 317
Query: 562 LAMEVAQIL-KL------------------------DGSPP---------------PSAY 581
L +E+A L KL + + P PSA
Sbjct: 318 LMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVPSAV 377
Query: 582 QIRYAGYKGVV---ACWPAKDDGIRMS-LRGSMKKFKSCHTSLEICSWTRFQPGFLNRQI 637
Q+R+AG KGV+ A P + S ++ S+ +LEI + G +N QI
Sbjct: 378 QMRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQTLEILRVAQRSKGMINMQI 437
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLV-------ASDVAFEVLTASCAEQGNTAAIM 690
I LLS + V D++F + K L L +D+ V AS + G M
Sbjct: 438 IVLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGKLILQM 497
Query: 691 LSAGFKPQTEPHLQGMLT-YELGELKECQCFIQ--VSESSL----ENCFS--KHG----- 736
L AG TEP LQ +L ++ +L+ + ++ V +S + +CF K G
Sbjct: 498 LMAGVDI-TEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGEVYVG 556
Query: 737 -------SRFAETKKLQV------------------------------INGFVVIAKNPC 759
S++A L+ + G VV+AKNPC
Sbjct: 557 LQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVAKNPC 616
Query: 760 LRPGDVRILEAVD----------RPELHHLCDCLV--------------FPQKGD-RPHT 794
GDVRI AV+ R L + V FP+ + RP T
Sbjct: 617 FYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYEGRPMT 676
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSKKSCPP--MECTPAE 832
+ SGSDLDGD+Y+V+WD +L+ ++ P + P E
Sbjct: 677 DCLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQANPGE 716
>gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete chrysosporium]
Length = 953
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/430 (25%), Positives = 200/430 (46%), Gaps = 66/430 (15%)
Query: 407 DVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNL 466
D D F+R+ F+DE + +++ +F + +RV IL++G ++
Sbjct: 460 DYHDCFVRINFVDETDLQFRFD----------REVDGRAF-----IKRRVGEILTNGIDI 504
Query: 467 CGRRYSFLAFSSNQLRDHSAWFFSK--VGETSVLDIKN---WMGEFTAKN-----IAKYA 516
GR + FLA+S + L++H+ WF + + ++++ + +G+FT + A+Y
Sbjct: 505 AGRHFEFLAYSQSALKEHAVWFVKEFMLPNGTIVNARTIIAGLGDFTRDHQLIYCPARYG 564
Query: 517 ARMGLCFSSTHATVEIPPTEVDHELPDIK--RNGYVFSDGIGKITPDLAMEVAQIL--KL 572
AR+ F++T ++V++ P EV E+ DI+ + F+ G+G ++ LA ++ + L +
Sbjct: 565 ARISQAFTATDSSVKVQPDEV-FEIDDIEGPTGTWCFTSGVGTMSVQLARDIWKKLAARR 623
Query: 573 DGS---PPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCH--TSLEIC-SWT 626
GS P A QIR+ G KG+++ G + LR SM KF++ T +EI ++
Sbjct: 624 GGSRWKTYPRALQIRFRGSKGMLSV-DHTLQGRAICLRPSMIKFEAPESLTDIEIARAFN 682
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGN 685
R P +LNR +I ++ L V E+F +Q + + + + A +L T
Sbjct: 683 RPGPFYLNRPLIMIMEHLGVPYEVFEELQDMAVEEAQESVESLEKAARLLETFGLGASYR 742
Query: 686 TAAIMLS---AGFKPQT-EPHLQGMLTYE----LGELKECQCFIQVSESSLENCFSKHGS 737
+I LS G P T + Q M+ + L ELK + +L HG
Sbjct: 743 LTSIFLSLHKLGVGPLTGDEFWQKMMDFAINHVLRELKHHARIPVPNAWNLVGVADVHG- 801
Query: 738 RFAETKKL------------QVINGFVVIAKNPCLRPGDVRILEAVDRP------ELHHL 779
+ E ++ ++G ++ ++P + PGDV++ + RP E L
Sbjct: 802 -YLEQDEVFGCIYPLDGTGPIYLDGPTLVTRSPTIHPGDVQVAHGIGRPPRGSPFEHESL 860
Query: 780 CDCLVFPQKG 789
+ LVF KG
Sbjct: 861 RNTLVFSTKG 870
>gi|302682736|ref|XP_003031049.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
gi|300104741|gb|EFI96146.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
Length = 739
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 186/403 (46%), Gaps = 55/403 (13%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
D FLRV+F +E L Y +++ + SF V RV SIL +G + GR
Sbjct: 326 DSFLRVSFTEE-------TKLQYRFD---REVDTASF-----VRSRVGSILKNGLVIAGR 370
Query: 470 RYSFLAFSSNQLRDHSAWFFS--KVGETSV--LDIKNWMGEFTAKN----IAKYAARMGL 521
+ FLA+S + L++H+ +F +VG+T V + +G F + A+YAAR+
Sbjct: 371 EFEFLAYSQSALKEHTVYFVKPFRVGDTEVNAASVIASIGNFEKSSDRLCPARYAARLSQ 430
Query: 522 CFSSTHATVEIPPTEVDHELPDIKR--NGYVFSDGIGKITPDLAM----EVAQILK--LD 573
F++T A++ + P E H + DI Y F+DG+G ++ ++A+ EV + K ++
Sbjct: 431 AFTATDASIVVNPAET-HIISDISTPDGMYHFTDGVGTMSREMAVDAYTEVNRYRKRAMN 489
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEICS-WTRFQPG 631
G P+A+QIR+ G KG+++ G + LR SM KF + +LEI + R
Sbjct: 490 GRGIPAAFQIRFMGSKGMLSV-DHTLQGRVVCLRDSMIKFDCPNNRNLEIARVFDRPAKY 548
Query: 632 FLNRQIITLLSTLNVSDEIFW-----TVQASMASKLNL-----MLVASDVAFEVLTASCA 681
+LNR +I LL L V E F VQ + +S +L ML A + S
Sbjct: 549 YLNRPLIMLLEGLGVPYETFLQHQDAAVQDAYSSTESLTKAARMLEALGLGTSFRLPSLL 608
Query: 682 EQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGS---- 737
+ + G L+ + + L ELK +L HG
Sbjct: 609 LNLVKLCNIENLGDNKFYSRMLEFAIHHVLRELKNHARIPIPGAYTLVGVADVHGYLKEW 668
Query: 738 ------RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRP 774
+ ++ ++ + G ++I ++P + PGDV+I A+ RP
Sbjct: 669 EIFACIKAHDSDEVIYLEGDILIPRSPSIHPGDVQIARAIGRP 711
>gi|397621217|gb|EJK66181.1| hypothetical protein THAOC_12913, partial [Thalassiosira oceanica]
Length = 906
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 166/353 (47%), Gaps = 35/353 (9%)
Query: 377 NEGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAP 436
N K+ D + R++++P + ++++RF+R+ F++ + +A V
Sbjct: 551 NASCKDDDFCVSLPRVLLSPLRLSITAFQSEMSNRFVRL-FINRHKFSESAFVRLTIGDE 609
Query: 437 IVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETS 496
+ S++ V +R++ ++ G L G+ Y FLA+SS+QL++ S W S
Sbjct: 610 NGDKLFGGELSRQ--VEERIRQLILQGVRLGGKTYHFLAYSSSQLKEQSMWLVCAERGWS 667
Query: 497 VLDIKNWMGEFT-AKNIAKYAARMGLCFS-----STHATVEIPPTEVDHELPDIKRN--G 548
V +++ MG+F+ ++ +KYAAR+G CFS ST + V +LPDI +
Sbjct: 668 VDSMRDLMGDFSMCESPSKYAARVGQCFSTTVTVSTRSHRRNDGLRVKDDLPDIPSSIES 727
Query: 549 YVFSDGIGKITPDLAMEVAQILKLDGSPPP-----SAYQIRYAGYKGVVACWPAKDDGIR 603
V SDG G I ++ ++ +L L P SA Q R G KGV+ W GI+
Sbjct: 728 LVHSDGCGLIRHEVLLK--SVLPLVPYAPRFKSDISAIQFRCGGAKGVLVGWDFNTLGIQ 785
Query: 604 ---MSLRGSMKKFKSCHTSLEICS---WTRFQPGFLNRQIITLLSTLNVSDEIFWTVQAS 657
+ LR S + IC Q G RQ+I L + L +S E+F ++Q
Sbjct: 786 NYDVCLRPSQ--------GVSICMRGIGGTHQLGIDWRQVILLGTHLGISGEVFLSLQDE 837
Query: 658 MASKLNLMLVASDVAFE---VLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML 707
M S LN MLV + A + + AE + ML++G KP +P L L
Sbjct: 838 MMSSLNRMLVDARFAAQYVPFIGGIDAEIVTSLCDMLASGLKPSRDPFLYSCL 890
>gi|159120120|ref|XP_001710276.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
gi|21666386|gb|AAM73688.1|AF393743_1 RNA dependent RNA polymerase [Giardia intestinalis]
gi|157438394|gb|EDO82602.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
Length = 2001
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 186/460 (40%), Gaps = 131/460 (28%)
Query: 502 NWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPD 561
NW+G+ K R GLCF + T+++ +V + D + NGYVF+DG G+I+ D
Sbjct: 427 NWLGDIKEVQACKICTRRGLCFGKSLPTIKVREEDV-QIVSDKEYNGYVFTDGAGEISYD 485
Query: 562 LAMEVAQIL-KL------------------------DGSPP---------------PSAY 581
L +E+A L KL + + P PSA
Sbjct: 486 LMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVPSAV 545
Query: 582 QIRYAGYKGVV---ACWPAKDDGIRMS-LRGSMKKFKSCHTSLEICSWTRFQPGFLNRQI 637
Q+R+AG KGV+ A P + S ++ S+ +LEI + G +N QI
Sbjct: 546 QMRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQTLEILRVAQPSKGMINMQI 605
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLV-------ASDVAFEVLTASCAEQGNTAAIM 690
I LLS + V D++F + K L L +D+ V AS + G M
Sbjct: 606 IVLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGKLILQM 665
Query: 691 LSAGFKPQTEPHLQGMLT-YELGELKECQCFIQ--VSESSL----ENCFS--KHG----- 736
L AG TEP LQ +L ++ +L+ + ++ V +S + +CF K G
Sbjct: 666 LMAGVD-ITEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGEVYVG 724
Query: 737 -------SRFAETKKLQV------------------------------INGFVVIAKNPC 759
S++A L+ + G VV+AKNPC
Sbjct: 725 LQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVAKNPC 784
Query: 760 LRPGDVRILEAVD----------RPELHHLCDCLV--------------FPQKGD-RPHT 794
GDVRI AV+ R L + V FP+ + RP T
Sbjct: 785 FYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYEGRPMT 844
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSKKSCPP--MECTPAE 832
+ SGSDLDGD+Y+V+WD +L+ ++ P + P E
Sbjct: 845 DCLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQANPGE 884
>gi|443920944|gb|ELU40764.1| calcium:hydrogen antiporter [Rhizoctonia solani AG-1 IA]
Length = 862
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 161/354 (45%), Gaps = 59/354 (16%)
Query: 394 ITPTKAYWFLESKDVADR-------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSF 446
ITPT + +S V R F+RV F DE + Y ++ + +F
Sbjct: 524 ITPTAVHLNEQSNRVIRRYPGYETHFIRVAFTDEA----DGRARFEY------EVDTMAF 573
Query: 447 SQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVG-ETSVLD---IKN 502
+QK RV L + LC R Y L +S + R+++ +F + + +++ I+
Sbjct: 574 TQK-----RVGKFLKNAIRLCDREYELLGYSQSGFRENACFFVAPFEWKDEIINGEYIRY 628
Query: 503 WMGEFTAKNI---AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKIT 559
+G F K I A+Y ARM FSST + + +E+ H + R +FSDG G I+
Sbjct: 629 SLGNFD-KVIDCPARYGARMSQAFSSTSQSTMLQESEIRHIMELKNRRDEMFSDGCGTIS 687
Query: 560 PDLAMEV-----------AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRG 608
+LA +V Q + PP A+QIR G KG+V P K +G + LR
Sbjct: 688 RELAKDVWKSMLQHLPPSRQGFHHENELPPPAFQIRIGGSKGMVRLDP-KLEGRVLCLRP 746
Query: 609 SMKKFKSCH-TSLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQA-----SMASK 661
SM KF++ H SLEI ++ + P FLNR ++ LL + V D++F + +M+
Sbjct: 747 SMTKFEAEHDLSLEIARAFVTYSPCFLNRPLVVLLWSGGVEDDVFLNLMKDNLAETMSGM 806
Query: 662 LNL-----MLVASDVAFEVLTASCAEQGNTAAIMLS-----AGFKPQTEPHLQG 705
L +L+A+ + AS + + I L +PQT+ QG
Sbjct: 807 TTLGGAAKLLIANRLGVPFQIASTLNRLSRLKIELGQDGVRTSERPQTQVQNQG 860
>gi|392587026|gb|EIW76361.1| RdRP-domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 935
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 173/402 (43%), Gaps = 75/402 (18%)
Query: 300 YKEGVSFEIMFLVNAVMHKGILNQHQLSD--SFFDLLRCQPREVIVTALKHIYSYKRPVF 357
+ + + + + F V A++H G+LN ++ L + E L+ R
Sbjct: 52 WMKSLDWPVAFQVAALLHNGLLNTQEIESIRPIITQLSNKSAEHTGDTLRLFTEKTRSQT 111
Query: 358 DAYEKLKDVQECLIKNPKLNEGPKNIDDIAE--VRRLVITPTKAY----WFLESKDV--- 408
+ L+ + E + N + + P+ + ITPT+ + +S V
Sbjct: 112 SFRQPLELLDELV--NYRASNQPRRTPPAGHFFCSHVTITPTRMLLEGPYITQSNRVIRK 169
Query: 409 ----ADRFLRVTFMDEGLQTMN----ANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSIL 460
D F+RV F +E Q +VL + + RV + L
Sbjct: 170 YDQFKDHFIRVEFREENRQKYRWEREVDVLEFLTS-------------------RVGAKL 210
Query: 461 SDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTA--KNIAKYAAR 518
G ++ GRR+SF+A+S + LR+HS WF + G + I +G F+A AK AAR
Sbjct: 211 KGGVDVAGRRFSFVAYSPSALRNHSLWFVCEEGFRPPVQILKELGNFSATTNQPAKRAAR 270
Query: 519 MGL-----------------CFSSTHATVEIPPTEVDHELPDI-------KRNGYVFSDG 554
MG+ FS+T ++++ ++ E+PDI R +VF+DG
Sbjct: 271 MGVSTNACYVPQCTKASFQQAFSATQPSIKVSKDQI-VEIPDITGPHNNPARPPHVFTDG 329
Query: 555 IGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF- 613
IG I+P L + + L + S P A+Q+R AG KGV + +G M R SMKKF
Sbjct: 330 IGTISPKLRDRICEALSI--STKPDAFQVRCAGLKGVFVV-DHQLEGKIMCPRPSMKKFL 386
Query: 614 ---KSCHTSLEIC-SWTRFQPGFLNRQIITLLSTLNVSDEIF 651
+S +EI ++ + FLNR ++ +L V E F
Sbjct: 387 PLDESEDAEIEIVRAFDKPGRSFLNRPLVMVLEDRGVKTEGF 428
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 44/264 (16%)
Query: 708 TYEL-GELKECQCFIQVSESSLENCFS-KHGSRFA-----ETKKLQVINGFVVIAKNPCL 760
+Y+L G E Q +I + EN F+ + G +A + Q + G VI+++P +
Sbjct: 518 SYQLVGVADEGQAYINAGK---ENVFTLRQGQIYACIQDPSDAEPQWLQGTCVISRSPVV 574
Query: 761 RPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
PGDV+ + A+ +P + LC + +VF +G P N G DG + + E
Sbjct: 575 HPGDVQRVYAIGKPPENQLCAFARLKNVVVFASRGTLPLANCLGG---DGHVTRLFITEQ 631
Query: 815 LIPPSKKSCPPMECTPAEAKPLTC---------HVNHQNLGQICNAHVVHADRSEYGAFD 865
+ P + P +P+T +++ +G + + H++ AD S G D
Sbjct: 632 VDPTEYDAREPYTLD----RPVTLDDICDFVVEYIHSDVVGLVADTHIIIADASSDGTLD 687
Query: 866 ENCILLAKLAATAVDSPKTG---KIVTMPSHLKPKKYPDFMEIEEYQT-----YKSNKIL 917
C+ LAK+ + AVD K G I MP L P K PD+ E E+ + Y+SN+ L
Sbjct: 688 RRCLELAKMHSQAVDYLKNGIPVDIRRMPRRLIPFK-PDWHEAEDESSHPCDYYRSNRAL 746
Query: 918 GRLYRQIKGAYDENISVSSEVDIN 941
G +YR DE+ + V+++
Sbjct: 747 GHMYRT---KLDEDRETLAHVEVD 767
>gi|308161550|gb|EFO63991.1| RNA-directed RNA polymerase, putative [Giardia lamblia P15]
Length = 1999
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 119/459 (25%), Positives = 180/459 (39%), Gaps = 130/459 (28%)
Query: 502 NWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPD 561
NW+G+ K R GLCF + T+++ V + D + N YVF+DG G+I+ D
Sbjct: 428 NWLGDINEVQACKICTRRGLCFGKSLPTIKVREEHV-QVVADRQYNNYVFTDGAGEISYD 486
Query: 562 LAMEVAQIL-----------------------------KLDGSPP-----------PSAY 581
L +E+A L + P PSA
Sbjct: 487 LMLEIALCLNKLKVEQLNKNTETHYLDEFADTSEDTEQNMSHLQPNLKTISNLIQVPSAV 546
Query: 582 QIRYAGYKGVV---ACWPAKDDGIRMS-LRGSMKKFKSCHTSLEICSWTRFQPGFLNRQI 637
Q+R+AG KGV+ A P K + S ++ S+ ++EI + G +N QI
Sbjct: 547 QMRWAGAKGVLILNALLPPKTILLHNSQIKFSIPNPTETQQTIEILRVAQPSKGMINMQI 606
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLML-------VASDVAFEVLTASCAEQGNTAAIM 690
I LLS + V D++F + K L L +D+ V S + G M
Sbjct: 607 IVLLSEMGVPDDVFLNLVYQDLQKALLFLEPIDRCRYQADLYQLVSRTSHSPSGKIILQM 666
Query: 691 LSAGFKPQTEPHLQGMLT-YELGELKECQCFIQVSES------SLENCFS--KHG----- 736
L AG EP LQ +L +L +L+ + ++ S + +CF K G
Sbjct: 667 LMAGVDI-IEPCLQFILMKLQLMQLRSMKANMRFSVPDSRIFVGIYDCFDLLKEGEVYIG 725
Query: 737 -------SRFAETKKLQVI-----------------------------NGFVVIAKNPCL 760
S++ T L+ I G V++AKNPC
Sbjct: 726 LQEPLSISKWTATTHLKAIFNDTQRESLLPPDLNLHISDVVGLDISCVEGRVIVAKNPCF 785
Query: 761 RPGDVRILEAVD----------RPELHHLCDCLV--------------FPQKGD-RPHTN 795
GDVRI +AV+ R +L + V FP+ + RP T+
Sbjct: 786 YRGDVRIYQAVNIFERLKQETSRQKLKAVLPSFVTREAIRGMYRGVICFPKYYEGRPMTD 845
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPP--MECTPAE 832
SGSDLDGD+Y+V+WD +L+ ++ P + P E
Sbjct: 846 CLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQARPGE 884
>gi|241636823|ref|XP_002410661.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503493|gb|EEC12987.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 385
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 150/341 (43%), Gaps = 33/341 (9%)
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEA------------KPLTCHVNHQNLG 846
GSDLDGD Y V W+ +L P P + K + ++ + N+G
Sbjct: 12 GSDLDGDEYIVIWEPDLFFPGSNKTPMTFSDSSSVGSADENLEEGMIKFICNYIINDNVG 71
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIE 906
+ NAH+ +D+ E G F C+ +AK +T VD KTG + H KP YPDFME
Sbjct: 72 IMSNAHLAWSDQLEDGIFSPLCLGVAKKISTCVDFAKTGLASCLDRHEKPLLYPDFMEKG 131
Query: 907 EYQ-TYKSNKILG---RLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTAD 962
+ TY+S ++LG RL+R ++ + + ++ + D H T E PG D
Sbjct: 132 GSKDTYRSKRVLGHLYRLHRSLQAVINTDF-MARTGQLAEGDGHC-TLFEYPGWKDHQEV 189
Query: 963 ARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYN--SRKQGELQERLKHSYSAFR 1017
A +Y Q++ +L QY V + I ++ YN + + ++ + Y++
Sbjct: 190 AEKALAAYTVQMSRILHQYGVGSEGEVVSGIIVNVSDYNKSNEDKNSVKALVAKQYASLM 249
Query: 1018 KEFRQVF-----EKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSAR 1072
K R F NS+ +D K + Q ASAWY VTY W +++ R
Sbjct: 250 KLTRDTFFSDVTAACNSNGASTDIAKKTILLQMASAWYMVTYAGVWHEQNCQSFPWPGFR 309
Query: 1073 SVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYV 1113
S+V + + +AR+ + + K VN RY+
Sbjct: 310 SMVEQN-----EEVVARLFKDWSGVLEVSIRKQVNVSGRYL 345
>gi|253743974|gb|EET00246.1| RNA-directed RNA polymerase, putative [Giardia intestinalis ATCC
50581]
Length = 1989
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 129/506 (25%), Positives = 195/506 (38%), Gaps = 151/506 (29%)
Query: 503 WMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDL 562
W+G + K R GLCF + T+++ +V H +PD + + YVF+DG G+I+ DL
Sbjct: 429 WLGTISELQACKICTRRGLCFGKSLPTIKVKEQDV-HIIPDRQYHDYVFTDGAGEISYDL 487
Query: 563 AMEVAQILKL-------------------------DGSPP-------------------P 578
+E+A L DG P
Sbjct: 488 MLEIAVCLDQIKTEQLNTNRDIGNFSDYNDDNEGEDGGTEDATLDLQTDLKVLSNSIQVP 547
Query: 579 SAYQIRYAGYKGVV---ACWPAKDDGIRMSLRGSMKKF-----KSCHTSLEICSWTRFQP 630
SA Q+R+AG KGV+ A P + + L S KF +LE+
Sbjct: 548 SALQMRWAGAKGVLILNALLPPR----TILLHKSQVKFTIPNPTETQQTLEVLRVAYPSR 603
Query: 631 GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS----------DVAFEVLTASC 680
G +N QII LLS + V DE+F + + L LV S D+ V AS
Sbjct: 604 GMINMQIIVLLSEMGVPDEVFLNL---VHQDLQKALVFSEPMDRCRHQADLYQLVSRASR 660
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLT-YELGELKECQCFIQVSES------SLENCFS 733
+ G ML AG TEP LQ +L ++ +L+ + ++ S + +CF+
Sbjct: 661 SSSGKLILQMLMAGVDI-TEPCLQFVLMKLQMMQLRSMKANMRFSVPDSRILIGIYDCFN 719
Query: 734 --KHG------------SRFAETKKLQVIN-----------------------------G 750
K G S++ + L+ I+ G
Sbjct: 720 LLKEGEVYIGLQSPLVISKWVASTHLKAISDAQHDTSISLSSHPHIFDMASEFGPSCVEG 779
Query: 751 FVVIAKNPCLRPGDVRILEAVDR--------------PELHHLCD----------CLVFP 786
VV+AKNPC GDVR+ +AV+ P L + FP
Sbjct: 780 RVVVAKNPCFYRGDVRVYQAVNLLERLKREASEKTLVPSLPPFVTQEAIKAMYKGVICFP 839
Query: 787 QKGD-RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQN- 844
Q + RP + SGSDLDGD+Y+V+WD ++I + P + TC N ++
Sbjct: 840 QYYEGRPMADCLSGSDLDGDIYWVSWDASIIGTIQYEYEPASFQANSGEINTCAPNLEDV 899
Query: 845 ---LGQIC-NAHVVHADRSEYGAFDE 866
LG + N ++ RS + + E
Sbjct: 900 EAGLGNLLRNESATNSSRSNWPSLQE 925
>gi|389748402|gb|EIM89579.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1346
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 142/286 (49%), Gaps = 44/286 (15%)
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
+ F+RV F DE + LSY +D+ F Q+ RV IL +GF L G
Sbjct: 458 TENFIRVDFRDE-------DRLSYRWD---RDVDGTYFLQQ-----RVGHILKNGFELAG 502
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLD-----------IKNWMGEFT--AKNIAKY 515
R + FLA+S++ LR+H+ WF S I+ +G+F+ + +KY
Sbjct: 503 RDFEFLAYSTSALREHAVWFVHPFHLPSSHPSHSGTYVNGHYIRQSLGDFSNVIRQPSKY 562
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKRNG-YVFSDGIGKITPDLAMEVAQIL---K 571
AAR+ F++T +V++ + + E+ DI + Y+ +DG+G I+ +L + L +
Sbjct: 563 AARIAQAFTATDPSVKVTRDQWE-EMEDIGDDDRYLHTDGVGTISLELGGMIWAELCESR 621
Query: 572 LD---GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF---KSCHTSLEIC-S 624
LD + PSAYQIR+ GYKG+V + GI+M LR SM+KF LEI +
Sbjct: 622 LDHGGNTVRPSAYQIRFLGYKGMVVI-DHRLVGIKMRLRPSMRKFVVDNDEDAWLEIARA 680
Query: 625 WTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASD 670
+ R LNR ++ +L V E F ++Q S L+ +SD
Sbjct: 681 FERPNSFSLNRALVMILEDRGVRKESFISLQEQTKS---LIYTSSD 723
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 132/302 (43%), Gaps = 58/302 (19%)
Query: 740 AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC------DCLVFPQKGD--- 790
+ETK L+ G +I+++P + PGD++ + AV P +C + +V P D
Sbjct: 840 SETKFLK---GPCMISRSPVVHPGDIQRVWAVGEPPKDKICFFKDLKNLVVLPSVADPSS 896
Query: 791 ---RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL--------TC- 838
R + G DLDGD Y + D + P S P + T A + L C
Sbjct: 897 DTDRSLASMLGGGDLDGDQYDIIIDNGSLMPEVHS-QPADYTGAGTRTLDRDATVDDICD 955
Query: 839 ----HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK---IVTMP 891
++N LG + + H+ AD+S G FD C+LLA+L + AVD PK GK I +P
Sbjct: 956 FIVEYINSDVLGLLSDKHLTIADQSREGTFDHRCMLLAELCSQAVDYPKNGKPVDISDLP 1015
Query: 892 SHLKPKKYPDFMEIE-----EYQTYKSNKILGRLYRQI------KGAYDENISVSSEVDI 940
L K PD+ + E E Y+S++ LG L+R I KG + + + D+
Sbjct: 1016 RSLSRFK-PDWHQAEVSGPRENDYYESDRALGHLFRNIELMPTQKGVPLDVPTKPTNPDM 1074
Query: 941 NPVDI-------HYDTDLEVPGSVDFTADARNQKCSYDGQLN----GLLGQYNVNRKEFR 989
+P+ + H D P S+ DG L+ L +Y +E R
Sbjct: 1075 DPICLAIAPRVQHVLLDYVAPSSISTVGSMAGSDAGIDGALDRTPQALFAKYA---RELR 1131
Query: 990 HI 991
+I
Sbjct: 1132 YI 1133
>gi|336378304|gb|EGO19462.1| hypothetical protein SERLADRAFT_478899 [Serpula lacrymans var.
lacrymans S7.9]
Length = 496
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 105/215 (48%), Gaps = 22/215 (10%)
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
I G VVI ++P + PGD++ + AV RPEL HL + +VF +GDR + +G DLDGD +
Sbjct: 102 IEGPVVITRSPQVHPGDLQFVTAVRRPELSHLTNVVVFSCEGDRSLASCLAGGDLDGDDF 161
Query: 808 YVTWDENLIPPSKKSCPPMECTPAEAKPLTC-----------HVNHQNLGQICNAHVVHA 856
+ DE L P + P + C ++ +G I H+ A
Sbjct: 162 NLILDEALFPEKVAMPGAYDSLPIKQTTSPCGISDVVDFVMNYIESDLIGYISILHLRFA 221
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS--HLKPKKYPDFM-----EIEEYQ 909
D + G C+ LA+ A+ AVD PKTG V M L K+ PDF+ ++
Sbjct: 222 DIKDPGC--NECLKLAQFASHAVDYPKTGSPVKMQDLPQLPGKERPDFLAREGANLQGED 279
Query: 910 TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVD 944
Y+S K+LG+LYR++ E I V D +P D
Sbjct: 280 FYQSQKLLGKLYRRV--PVSEWIPVPWNRDYSPSD 312
>gi|297832162|ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 981
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 152/627 (24%), Positives = 244/627 (38%), Gaps = 125/627 (19%)
Query: 426 NANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHS 485
+ NVL+ A D+ NS + + K I +G + RRY F F +
Sbjct: 245 DENVLTVKFA----DVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKK 300
Query: 486 AW--------FFSKVGETSVLDIKN---------------WMGEFTAKNIAKYAARMGLC 522
+F + T+ D++N +M A +A Y AR L
Sbjct: 301 KDLSTKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLI 360
Query: 523 FSSTHATVEIPPTEV-----------DHELPDI---KRNGYVFSDGIGKITPDLA----- 563
S T T+E+ T + D + D+ + + SDG G I+ DLA
Sbjct: 361 LSKT-KTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPL 419
Query: 564 -------MEVAQILKLDGSPPPSAYQIR--YAGY--KGVVA--------CWPAKDDGIRM 604
+ I + PP Q R Y GY KG + I++
Sbjct: 420 NIFKGKCLRSENIQEACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKV 479
Query: 605 SLRGSMKKFKSCHTSLEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
S S+ F S +LE+ + + + L++ ++ LLS + +E F + + +
Sbjct: 480 SKDPSLSNF-STFNALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESK 538
Query: 664 LMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQG----MLTYELGELKECQC 719
+ A V AA M+ G P EPHL+ +L E +LK +
Sbjct: 539 SIFYNKHAALNVALNYGEMDDQNAAQMILVGI-PLDEPHLKNHLSILLKTEKNDLKAGR- 596
Query: 720 FIQVSESS-LENCFSKHGSRFAETKKLQV--------INGFVVIAKNPCLRPGDVRILEA 770
+ V+ES L G E K+ +V I+G V++ +NP L GD+ IL+A
Sbjct: 597 -LPVTESYYLMGTVDPTG----ELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKA 651
Query: 771 VDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---------- 816
L + FPQKG R +E +G D DGD+Y+++ + L+
Sbjct: 652 TYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWV 711
Query: 817 ---PPSKKSC--PPMECTPAEAKPLTCHVNHQNLGQICNAHVVHAD-------------- 857
PPSK + P + +P E + + + N + AD
Sbjct: 712 SLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGD 771
Query: 858 -RSEYGA-FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
R+E A + + L + A+D+PK G V +P+ L+P +P +ME E + +KS
Sbjct: 772 ERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMERE--KKFKSTS 829
Query: 916 ILGRLYRQIKGAYDENISVSSEVDINP 942
ILG +Y +K E + SSE+ P
Sbjct: 830 ILGLIYDFVKSQTTEEPTPSSEISKLP 856
>gi|383145820|gb|AFG54512.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 991 IWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWY 1050
I ++ K NSRKQGE++ERL+H+Y A R EFR +F+ +D E+ + K YE KASAWY
Sbjct: 1 ISTLSKLNSRKQGEIKERLQHAYRALRNEFRLIFQG-KTDGEIPEPCKRSEYEAKASAWY 59
Query: 1051 QVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
VTYH WV+K+ +L E + LLSF WI+ DYLA+IK++
Sbjct: 60 HVTYHPTWVQKARELTELDGYFTSPLLSFPWISVDYLAQIKLQ 102
>gi|361066837|gb|AEW07730.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 991 IWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWY 1050
I ++ K NSRKQGE++ERL+H+Y A R EFR +F+ +D E + K YE KASAWY
Sbjct: 1 ISTLSKLNSRKQGEIKERLQHAYRALRNEFRLIFQG-KTDGETPEPCKRSEYEAKASAWY 59
Query: 1051 QVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
VTYH WV+K+ +L E + LLSF WI+ DYLA+IK++
Sbjct: 60 HVTYHPTWVQKARELTESDGYFTSPLLSFPWISVDYLAQIKLQ 102
>gi|383145806|gb|AFG54505.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145808|gb|AFG54506.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145810|gb|AFG54507.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145812|gb|AFG54508.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145814|gb|AFG54509.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145816|gb|AFG54510.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145818|gb|AFG54511.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145822|gb|AFG54513.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145824|gb|AFG54514.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145826|gb|AFG54515.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145828|gb|AFG54516.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145830|gb|AFG54517.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145832|gb|AFG54518.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145834|gb|AFG54519.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145836|gb|AFG54520.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145838|gb|AFG54521.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145840|gb|AFG54522.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 991 IWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWY 1050
I ++ K NSRKQGE++ERL+H+Y A R EFR +F+ +D E + K YE KASAWY
Sbjct: 1 ISTLSKLNSRKQGEIKERLQHAYRALRNEFRLIFQG-KTDGETPEPCKRSEYEAKASAWY 59
Query: 1051 QVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
VTYH WV+K+ +L E + LLSF WI+ DYLA+IK++
Sbjct: 60 HVTYHPTWVQKARELTELDGYFTSPLLSFPWISVDYLAQIKLQ 102
>gi|241168347|ref|XP_002410232.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215494759|gb|EEC04400.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 632
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 33/287 (11%)
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAK---------PLTC-HVNHQNLGQ 847
+GSDLDGD Y V W+E+L P P + + C ++ + N+G
Sbjct: 63 TGSDLDGDEYIVIWEEDLFFPGCNKQPMVFSDSSSTATSNNSLGMIQFVCNYIKNDNVGI 122
Query: 848 ICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEE 907
+ NAH+ AD+ G F + C+ +A+ +T +D KTG+ ++ KP +YPDFME
Sbjct: 123 MSNAHLAWADKEGDGIFSKRCLKIAQKISTCLDFAKTGETASLDRDEKPLQYPDFMEKGG 182
Query: 908 YQ-TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTD-----LEVPGSVDFTA 961
++ TY+S +LG LYR + S+ + V N D D D E PG D
Sbjct: 183 FKDTYRSQHVLGHLYRLHR-------SLEAVVSTNFQDRAADGDGNHALFEYPGWRDHEE 235
Query: 962 DARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRK--QGELQERLKHSYSAF 1016
A+ Y ++ +L Q+ + + I S+ YN K + ++ ++ Y
Sbjct: 236 SAQTALAVYGSRMEQILRQHGIKTEGEVVSGIINSVSDYNKSKTDKASVEALVEKQYRDL 295
Query: 1017 RKEFR-QVFEKMNSDFEL----SDNEKNVLYEQKASAWYQVTYHREW 1058
K R Q F +++ + ++ K + Q ASAWY VTY W
Sbjct: 296 VKSTREQFFRDVDAACQSLKVPTEAGKLTVLLQVASAWYMVTYAGVW 342
>gi|402594185|gb|EJW88111.1| hypothetical protein WUBG_00980 [Wuchereria bancrofti]
Length = 902
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 175/397 (44%), Gaps = 59/397 (14%)
Query: 355 PVFDAYEKLKDVQECLIKNPKLNEGPKNIDD--IAEVRRLVITPTKAYWFLESKDVADRF 412
P+ A+E++++ +K L E + D VR+ VITPT+ + + +R
Sbjct: 438 PLISAFERIQN--SIFVKKELLAEIHERSADEGFQRVRKAVITPTRMLLVVPELLMGNRV 495
Query: 413 LRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVF---KRVKSILSDGFNLCGR 469
LR F + G + D ++ + G++ + + L G ++ R
Sbjct: 496 LR-EFDESGDSALRIQFRD--------DDGAHLRRSRAGLYIIETTIHNCLLRGVHISDR 546
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFS-STHA 528
+ +LA S++Q+RD+ +FF+ + V I++ +G+F NI K +RMG CF+ S +
Sbjct: 547 HFVYLASSNSQMRDNGCYFFNDGVDGKVKKIRDKLGKFDHTNIPKLMSRMGQCFTQSKES 606
Query: 529 TVEIPPTEVDHELPDIKRNG-----YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQI 583
V + + + I ++FSDG+GK++ D A ++A L L G PS +Q
Sbjct: 607 DVTLRRRKYNKTYDVIGGKDSCGEPFIFSDGVGKLSEDFAEQIANDLGL-GKCVPSCFQF 665
Query: 584 RYAGYKGVVACWPA---------------------KDDGIRMSLRGSMKKFKSCHTS-LE 621
RY G KGV++ PA K + + + R S KF + +E
Sbjct: 666 RYRGLKGVLSVDPALRQRRLWAERNGLEDKHAKTEKVNDLDILFRPSQDKFHAPRKEIIE 725
Query: 622 ICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS-----------KLNLMLVASD 670
I ++ +LNR +I +L VSD + V + + + KL+ L++ D
Sbjct: 726 IVKYSCPTFVYLNRPLINILD--QVSDMQGFDVHSRIVNRIHGLLDRQLLKLSDALMSED 783
Query: 671 VAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML 707
E L A + N + L+ GF EP G+L
Sbjct: 784 RCRERL-AEFPRRINVQYLSLARGFTLTQEPFFHGLL 819
>gi|242051713|ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 170/673 (25%), Positives = 262/673 (38%), Gaps = 142/673 (21%)
Query: 508 TAKNIAKYAARMGLCFSST--------HATVEI----PPTEVDHELPDIKRNGYVFSDGI 555
A +AKY +R L S T V+I P E E+ + +DG
Sbjct: 481 NAPTVAKYLSRFALILSKTIKLDVDFSKVNVKIIDDEPCREESGEIAVQDGKDLIHTDGT 540
Query: 556 GKITPDLAMEV-AQILKLD--------------GSPPPSAYQIR--YAGY--KGVVAC-- 594
G I+ DLA + I K + + P Q R + GY KG +
Sbjct: 541 GLISVDLARNCPSSIFKGNFLKDAVDSKGHQHLTTKHPLLIQFRMFHNGYAVKGTLLADK 600
Query: 595 -WPAKDDGIRMSL---RGSMKKF-KSCHTSLEICSWTRFQP--GFLNRQIITLLSTLNVS 647
PA IR S+ G F + SLE+ + T ++P F +R +I+LL V
Sbjct: 601 RLPANTIHIRPSMIKIHGDENSFGEKSFNSLEVIT-TSYRPKRAFTSRFLISLLHYGRVR 659
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML 707
+E F + + +N + EV + +A M+ +G +P+ E +LQ L
Sbjct: 660 EEFFLDLLRNALEDVNNARHRPRNSLEVAFNHADLDDSMSARMILSGIQPEDEAYLQSQL 719
Query: 708 TY----ELGELKECQCFIQVSESSLENCFSKHGSR--FAETKKLQV--------INGFVV 753
E LKE + I ++ + G+ K+ QV ++G V+
Sbjct: 720 ALMAKVERKGLKEGRIPI-------DDTYYLMGTTDPTGTLKRDQVCIILDNGQLSGKVL 772
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYV 809
+ K+P L GD+ IL A L + + FP G R +E + SD DGDLY+V
Sbjct: 773 VYKHPGLHFGDIHILTATYIDGLEKIVGNSKYAIFFPTCGPRSLADEMANSDFDGDLYWV 832
Query: 810 T---------------WDENLIPPSKKSCPPMECTPAEAKPLTCH-------VNHQNLGQ 847
+ W + P + P + T + + L H LG
Sbjct: 833 SRNPQLLEGFTKQRKPWVRRIQPTKTELKKPQDYTGPKLESLLFHEFLRARFTPSYVLGA 892
Query: 848 ICNAHVVHADR--------SEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY 899
N + DR SE A + + L + A+D+PK G +T+P LK KKY
Sbjct: 893 ASNCWLALMDRLLTGGVPKSERQAIKKKMLDLVDIYYLALDAPKEGNKITVPGELKVKKY 952
Query: 900 PDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDF 959
P FME +E ++Y S +LG++ YDE + SE+D + EV S D
Sbjct: 953 PHFMERDEKKSYTSTSVLGKI-------YDEVMLKESEIDPEIKIVPLSCFTEVKVSED- 1004
Query: 960 TADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKE 1019
Y G+ L QY R + K + + ++Y +E
Sbjct: 1005 ----------YKGRWRSLYYQY------LRESTDLCKLEDKAEK------NNNYRQLYQE 1042
Query: 1020 F-RQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLS 1078
+ R+++E +FE S E+ L + A A YQV Y E+ D+ + G
Sbjct: 1043 YKRKLYEA--EEFEQSPREQLDLLNE-ACAVYQVVY--EYAMSRNDIAKCG--------- 1088
Query: 1079 FAW-IANDYLARI 1090
FAW +A L R+
Sbjct: 1089 FAWKVAGRALCRL 1101
>gi|290988738|ref|XP_002677050.1| predicted protein [Naegleria gruberi]
gi|284090655|gb|EFC44306.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 166/386 (43%), Gaps = 63/386 (16%)
Query: 463 GFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLC 522
GF L G+ + + SS+ L + +F + ++DI G + A I AR L
Sbjct: 142 GFCLYGQMFKPIGASSSLLSERGVYFTCEEDPMKMMDI---FGIY-ASEIETKIARQCLN 197
Query: 523 FSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILK---LDGS--PP 577
F+ST T+ + V ++ G V SDGIG I+ A V L+ +DG
Sbjct: 198 FTSTKETIRVHKYIVIDDINSRDGKGIV-SDGIGMISYSFAKAVCCSLRDQSIDGKYVHI 256
Query: 578 PSAYQIRYAGYKGVVACWPAK-DDGIRMSLRGSMKKFKS--CHTSLEIC-SWTRFQPGFL 633
P A+QIR+ G+KG++ P K +G ++ LR SMKKF+ LEI +
Sbjct: 257 PRAFQIRFLGFKGMLTVCPDKIMNGNQIILRESMKKFEGNPLFNKLEIVEGLNESDTANI 316
Query: 634 NRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSA 693
NRQII LLS+L V DE+F Q ++ +D F + E+
Sbjct: 317 NRQIIILLSSLQVKDEVFLNAQKKALARNK---CRNDEEFRARIKNAKEK---------T 364
Query: 694 GFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVV 753
F + +G+L E +LK+ Q + +K+G KK V+
Sbjct: 365 KFFMKDSVIAKGILD-ETKQLKDNQVIV----------ITKNGRMVPGGKK-------VI 406
Query: 754 IAKNPCLRPGDVRILEAVDRPELHH----------------LCDCLVFPQKGDRPHTNEA 797
+ +NP L P DVRI E V P+ + DC G+ + +
Sbjct: 407 VFRNPGLHPRDVRIFETVSIPDYYQKWFGHEVDLKGSVIIFAADCQQHNIPGELGNFHLF 466
Query: 798 SGSDL---DGDLYYVTWDENLIPPSK 820
S S+L DGD ++ +W+ +IP ++
Sbjct: 467 SISNLQFKDGDRFFTSWNTEIIPQAQ 492
>gi|383127813|gb|AFG44556.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127815|gb|AFG44557.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127817|gb|AFG44558.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127819|gb|AFG44559.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127821|gb|AFG44560.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127823|gb|AFG44561.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127825|gb|AFG44562.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
Length = 114
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 1003 GELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKS 1062
GE++ERL+H+Y A RKEFR VFE D E + K YE KASAWY V YH WV+K+
Sbjct: 1 GEIKERLQHAYKALRKEFRLVFEG-TKDSENPEPRKQSDYEAKASAWYHVAYHPTWVQKT 59
Query: 1063 LDLLEQGSARSVVLLSFAWIANDYLARIKIK 1093
++L+E S LLSF WI+ DYLA+IK++
Sbjct: 60 MELIEPNGYHSAPLLSFPWISVDYLAQIKLQ 90
>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 155/326 (47%), Gaps = 59/326 (18%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCNSKQRVQEDC 274
+LL L +PRI R E F DD W+RTTDF+PS IG +S +
Sbjct: 166 LLLQLFGAPRIYKRLE----ESCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNG 220
Query: 275 LSQP---------------VTIREEPDFE-------VPVEDPFFCMHYKEGVS--FEIMF 310
+ P V +R F VP+ +H GV ++I+F
Sbjct: 221 IRLPNFRESFFYYKESGNQVILRTGFTFSFSQKLALVPI------VHLPNGVDLPYKILF 274
Query: 311 LVNAVMHKGILNQHQLSDSFFDLLRCQPREV--IVTALKHIYSYKRPVFDAYEKLKDVQE 368
+++++ G L+ +FF L+ + R + I AL+ +Y K +D L + +
Sbjct: 275 KISSLIQHGCFPGVALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYD 334
Query: 369 CLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR-----------FLRV 415
+K +L + P +DD + VRR+V+TP K Y+ +V++R FLRV
Sbjct: 335 EYLKRRQLPKSPSITLDDGLVYVRRVVVTPCKVYFSGPEVNVSNRVLRNYSEDIDNFLRV 394
Query: 416 TFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLA 475
+F+DE + +++ L + + T N +T ++ R+ S L +GF + +++ FLA
Sbjct: 395 SFVDEEWEKIHSTDL------LPRASTGNG--MRTDIYLRILSTLRNGFVIGDKKFEFLA 446
Query: 476 FSSNQLRDHSAWFF-SKVGETSVLDI 500
FSS+QLRD+S W F S+ G T+ DI
Sbjct: 447 FSSSQLRDNSVWMFASRPGLTANDDI 472
>gi|299740358|ref|XP_001838853.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404206|gb|EAU82968.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1548
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 102/203 (50%), Gaps = 17/203 (8%)
Query: 463 GFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGL 521
G L G +Y F S++QLR S + + + D +G+F+ NIAK A R+GL
Sbjct: 45 GVFLNGVQYRFYHHSNSQLRGRSCFLREANSDKELDDRIYALGDFSRINNIAKRAKRIGL 104
Query: 522 CFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKL---DGSPPP 578
FSS + PT V+ ++ DI+ G VFSDG G I+ L ++A+ KL P
Sbjct: 105 LFSSAEVDFNLDPTFVE-DIGDIEIGGEVFSDGCGLISKSLTKQIAKAKKLMFRGIRYTP 163
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRM----------SLRGSMKKFKSCHT-SLEICSWTR 627
QIRY GYKGV+ P D+ R R SMKKFK+ S + +++
Sbjct: 164 VVIQIRYEGYKGVLMLHPDLDERNRQREPGTPPCYAQFRKSMKKFKATSDHSFSVVGYSK 223
Query: 628 -FQPGFLNRQIITLLSTLNVSDE 649
+ G LN IITL+ +L V+ E
Sbjct: 224 PYSFGRLNNDIITLIHSLGVTKE 246
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 768 LEAVDRPELHHLCDCLVFP----QKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS---- 819
L AVD P+L HL DCLVF + G +P + +SG DLDGD ++V WD++L+PP
Sbjct: 309 LRAVDHPQLSHLVDCLVFASAVRRPGSKPAPSLSSGGDLDGDEFFVCWDQDLVPPRVSEP 368
Query: 820 -----KKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKL 874
K P T A+ + ++ H A S GA C L L
Sbjct: 369 YDYPPNKEPRPKAVTRADLANHFASYTSSGVAKVSALHNKWAISSPLGALCVECQELNAL 428
Query: 875 AATAVDSPKTGKIVTMPSHLK 895
+ +VD G + +P L+
Sbjct: 429 HSQSVD----GAPIKIPERLQ 445
>gi|409046080|gb|EKM55560.1| hypothetical protein PHACADRAFT_173707 [Phanerochaete carnosa
HHB-10118-sp]
Length = 876
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 192/451 (42%), Gaps = 97/451 (21%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRV F DE + +++ +F + R ++L G + GR +
Sbjct: 450 FLRVRFADEARLQFRSE----------REVDCRAF-----IHNRFGNVLRRGLVIAGRHF 494
Query: 472 SFLAFSSNQLRDHSAWFFSKVGETSVL-DIKNWMGEFTAKNI------------------ 512
FL ++ L++H+AWF + +V D + TA I
Sbjct: 495 HFLGYTQASLKEHTAWFVRSFKQPAVTSDGTSCEETVTADTIIAGLGVFDGILYDPELIM 554
Query: 513 --AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG-YVFSDGIGKITPDLAMEV-AQ 568
A+Y AR CFSST A+V I +++ + +G F+DG+G I+P+LA E+ +
Sbjct: 555 CPARYGARQAQCFSSTSASVTIDLDDIEVVEDIVDADGERSFTDGVGTISPNLAAEIWTR 614
Query: 569 ILKLDGSPP----PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHT-SLEIC 623
+ G PP P +QIR G KG+V+ G ++ LR SM KF + + +LEI
Sbjct: 615 LCAASGRPPSERGPRRFQIRIQGAKGMVSV-DHLLQGRKLCLRPSMIKFYAADSRTLEIA 673
Query: 624 -SWTRFQPGFLNRQIITLLSTLNV--SDEIFWTVQASMASKLNLMLVASDVAFEVLTASC 680
++ + +LNR ++ LL L++ + +Q S+ K ++ A + L A+
Sbjct: 674 DAFVKPSKFYLNRPLVMLLEELDILGGYDFLKFLQESVVEK-------TEAAVQSLYAAA 726
Query: 681 A-----EQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQ------------- 722
G T LS F+ E H G+ T + ++ CF +
Sbjct: 727 DLFDDFNLGRTYD--LSNVFR---ELHHMGIATLDDTFSQQVLCFGRHHVLRDLKYRARI 781
Query: 723 --------VSESSLENCFSKHGSRFA-----ETKKLQVINGFVVIAKNPCLRPGDVRILE 769
V + + C + G FA E ++ ++G +I+++P + GDV+++
Sbjct: 782 PVPSGWNLVGVADIHGCL-EEGEIFACVIPYEGQEPIYLHGPTLISRSPVIHRGDVQVVR 840
Query: 770 AVDRP------ELHHLCDCLVFPQKGDRPHT 794
A+ P E+ L + +VF KG T
Sbjct: 841 AIGPPPPGSPFEIEPLHNSVVFSTKGSSAFT 871
>gi|302690464|ref|XP_003034911.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
gi|300108607|gb|EFJ00009.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
Length = 1237
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 30/206 (14%)
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRP------ELHHLCDCLVFPQKGDRPHTNEASGSD 801
+ G +I+++P GDV+ + A+ RP L + +V P GDR + SG D
Sbjct: 860 LEGNCIISRSPVTHVGDVQRVHAIGRPPADMLSSFGKLKNLVVLPSVGDRSLCSMLSGGD 919
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEA----KPLTC---------HVNHQNLGQI 848
LDGDLY + E+L+ ++ P++ P E +P T ++N +G +
Sbjct: 920 LDGDLYDIIMCEDLLYSQQEK--PLDFDPGETFQLNRPATVDDICNFIVEYINSDVVGLL 977
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKP----KKYPDFME 904
+ +V AD+S+ G FDE+C+ +AKL + AVD PK G V + + P ++ PD+
Sbjct: 978 SDRLLVIADQSKNGIFDEDCVKIAKLCSQAVDYPKQGIPVDLENGNLPRPLMRQKPDWHA 1037
Query: 905 IE-----EYQTYKSNKILGRLYRQIK 925
E + Y+S+K LGRLYR I+
Sbjct: 1038 AEVIRPRDNDYYRSDKALGRLYRNIQ 1063
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 51/302 (16%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
F+RV F DE + L+Y + + + F V +RV IL++GF L GR +
Sbjct: 464 FIRVEFRDE-------DRLAYRWD---RTVDGSQF-----VRERVGGILANGFKLGGRSF 508
Query: 472 SFLAFSSNQLRDHSAWFFS-----KVGETSVLD-IKNWMGEFTAKNIAKYAARMGLCFSS 525
FLA+S++ LR+HS W+ + ++G D I++ +G F ++ YAAR+ F++
Sbjct: 509 VFLAYSTSALREHSVWYLNEFYHEELGYCITADYIRDSIGHF-PEDSKLYAARLAQAFTA 567
Query: 526 THATVEIPPTEVDHELPDI--------KRNGYVFSDGIGKITPDLAMEV-AQILKLDGSP 576
T +V+I E + E+ D+ + + Y+F+DG+G I+ L + +++ G
Sbjct: 568 TEPSVKIRRDEWE-EMEDLSPPPPPGKRVSPYLFTDGVGTISRSLGDRIWGKLISERGGD 626
Query: 577 PPSAY----------QIRYAGYKGVVACWPAKDD---GIRMSLRGSMKKFKS-----CHT 618
A +IR+ GYKG+VA D GI M LR SM+KF S
Sbjct: 627 LTQAVAAGRCGSISGRIRFLGYKGMVAVDEEMDKDNTGIHMRLRPSMRKFDSKEEDMWEA 686
Query: 619 SLEICSWTRFQPG-FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLT 677
+EI + F N+ ++T+L L V + F +Q S + + + D +VL
Sbjct: 687 DIEIARHFAYPNNMFTNKALVTVLENLGVGCDQFEKLQQSAVASVERIHDDIDAWRDVLR 746
Query: 678 AS 679
++
Sbjct: 747 SN 748
>gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5
gi|330251850|gb|AEC06944.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 147/625 (23%), Positives = 237/625 (37%), Gaps = 125/625 (20%)
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
NVL+ A + K ++ S + K I +G + RRY F F +
Sbjct: 243 NVLTVKFADVQKSSSTYSIDH----YFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKD 298
Query: 488 --------FFSKVGETSVLDIKN---------------WMGEFTAKNIAKYAARMGLCFS 524
+F + T+ D++N +M A +A Y AR L S
Sbjct: 299 LSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILS 358
Query: 525 STHATVEIPPTEV-----------DHELPDI---KRNGYVFSDGIGKITPDLA------- 563
T T+E+ T + D + D+ + + SDG G I+ DLA
Sbjct: 359 KT-KTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNI 417
Query: 564 -----MEVAQILKLDGSPPPSAYQIR--YAGY--KGV-----------VACWPAKDDGIR 603
+ I + PP Q R Y GY KG V P+ I+
Sbjct: 418 FKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSM---IK 474
Query: 604 MSLRGSMKKFKSCHTSLEICSWTRFQPGF--LNRQIITLLSTLNVSDEIFWTVQASMASK 661
+S S+ F S +LE+ + T P L++ ++ LLS + +E F + + +
Sbjct: 475 VSKDPSLSNF-STFNALEVVT-TSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEE 532
Query: 662 LNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQG----MLTYELGELKEC 717
+ A AA M+ G P EPHL+ +L E +LK
Sbjct: 533 SKSIFYNKRAALNAALNYGEMDDQNAAQMILVGI-PLDEPHLKNYLSILLKTEKNDLKAG 591
Query: 718 QCFIQVSESSLENCFSKHGSRFAETKKLQV-----INGFVVIAKNPCLRPGDVRILEAVD 772
+ + V+ES E + + I+G V++ +NP L GD+ IL+A
Sbjct: 592 K--LPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATY 649
Query: 773 RPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC 828
L + FPQKG R +E +G D DGD+Y+++ + L+ K S P +
Sbjct: 650 VKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSL 709
Query: 829 T----------PAEAKPLTCHVNHQNLGQICNAH--------------------VVHADR 858
T P++ P + H ++ DR
Sbjct: 710 TPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDR 769
Query: 859 SEYGA-FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKIL 917
+E A + + L + A+D+PK G V +P+ LKP +P +ME + + ++S IL
Sbjct: 770 AEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERD--KKFQSTSIL 827
Query: 918 GRLYRQIKGAYDENISVSSEVDINP 942
G ++ +K E S SSE+ P
Sbjct: 828 GLIFDFVKSQTTEEPSPSSEISKLP 852
>gi|358377627|gb|EHK15310.1| hypothetical protein TRIVIDRAFT_122493, partial [Trichoderma virens
Gv29-8]
Length = 1284
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 66/364 (18%)
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILK 571
+ K +R+ L S T T+ + ++ + D+K V +DGIG+I+P LA +V + L
Sbjct: 550 VTKLFSRLALSLSRTWPTILLDDHQIIRKRRDLKPGKMVMNDGIGRISPSLAKKVTEALG 609
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS-----C------HTSL 620
L S PS +Q R KG+ W D S R ++ + S C H +L
Sbjct: 610 L--SDCPSCFQGRLGSAKGM---WLIDVDSEEDSERDWVEVYPSQRKWECDYDDPHHRTL 664
Query: 621 EICSW-TRFQPGFLNRQIITLLSTLN---------VSDEIFWTVQASMASK--------- 661
EI +W + + LN+Q I +L + +S+ + + A + +
Sbjct: 665 EIRNWPSELKSASLNQQFIPVLEARSPQPDAMRRVISEHLQRALHADLGEQAAAMKEPMS 724
Query: 662 LNLMLVAS---------DVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM------ 706
L L + S D + + L + A +L +GF + +L+ +
Sbjct: 725 LRLWIHQSGPSKNDRSLDGSAKFLAGLPDSGADKVAFLLDSGFDQRRMKYLKELVWDMCK 784
Query: 707 -----LTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF---------V 752
L ++ C +I ++ + + + + + K Q GF +
Sbjct: 785 KKADTLKTKMNITIPCSAYIYMA-ADFSSTLEEGEVHLSFSTKFQA-EGFSDTLLEHMDI 842
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++A+ P P D++ + V RPEL L D ++F KGD+P + SG D DGD+ +V WD
Sbjct: 843 LVARAPAHFPSDIQRVRVVSRPELRKLKDVIIFSTKGDKPLADMLSGGDYDGDMAWVCWD 902
Query: 813 ENLI 816
+N++
Sbjct: 903 QNIV 906
>gi|336378305|gb|EGO19463.1| hypothetical protein SERLADRAFT_442939 [Serpula lacrymans var.
lacrymans S7.9]
Length = 733
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 184/412 (44%), Gaps = 59/412 (14%)
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPP-----PSAYQIRYAGYKGVVACWPAKDDGI 602
G V +DG G I+ L EV L+ PSAYQ R G KGV+ P + +G
Sbjct: 126 GNVMTDGCGTISVALCNEVWSSLRNRKKHKHVKNVPSAYQFRIGGAKGVLVQDP-RLEGN 184
Query: 603 RMSLRGSMKKFKSCHT-SLEICSWTRFQPG--FLNRQIITLLSTLNVSDEIFWTVQASMA 659
+ LR S KF + +L+I S T QP FLNR +I LL L +Q +
Sbjct: 185 VVCLRPSQTKFDAPGIRTLDIQS-TSSQPKAMFLNRPLIVLLEYLGTDSNHIIALQNNAI 243
Query: 660 SKL----NLMLVAS---------------DVAFEVLTASCAEQGNTAAIMLSAGFKPQ-T 699
S+ N L AS + + T G+++ ++S +K
Sbjct: 244 SEAQTAHNSFLDASKMFQKNNFGASFRLPSLFHNLATLLDIHPGDSSLGLVSTSWKHDLV 303
Query: 700 EPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPC 759
LQ + TY L ELK + I V S ++ G T + I G V+I ++
Sbjct: 304 AKLLQCVSTYALRELK-YRAHIAVPGS-----YTLLGDE--RTGLYKSIEGRVLITRSAQ 355
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
+ PGDV+++ AV PEL HL + +VF KG+R + G L GD + + DE+L P
Sbjct: 356 IHPGDVQVVTAVRHPELSHLTNVVVFSCKGNRSLASCLGGGGLAGDDFNLLLDESLFP-- 413
Query: 820 KKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAV 879
KK P ++ P+ +N C+A + AD + G C+ LA+ A+ AV
Sbjct: 414 KKVAKP---GTYDSLPIKKTINP------CSASDI-ADVKDPGC--SECLQLAQYASHAV 461
Query: 880 DSPKTGKIVTMPS--HLKPKKYPDFM-----EIEEYQTYKSNKILGRLYRQI 924
D PKTG V M L PDF+ I Q Y S K+LG L+R++
Sbjct: 462 DFPKTGSPVRMKDLPQLSGLSKPDFLAPEGANIRSDQYYFSPKLLGVLHRRV 513
>gi|340515396|gb|EGR45650.1| predicted protein [Trichoderma reesei QM6a]
Length = 989
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 156/362 (43%), Gaps = 65/362 (17%)
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILK 571
IAK +R+ L S T TV + ++ D++R V +DGIG+I+P LA +VA L
Sbjct: 256 IAKLFSRLALSLSRTWPTVVLEKEQILVRRKDLEREK-VMNDGIGRISPSLAKKVADALG 314
Query: 572 LDGSPPPSAYQIRYAGYKGVVACW----PAKDDGIRMSLRGSMKKFK-----SCHTSLEI 622
L S PS +Q R KG+ W + D+ + + S K++ H +LEI
Sbjct: 315 L--SDCPSCFQGRLGSAKGM---WLIDVDSDDERDWVEIYPSQTKWECDFDDPHHRTLEI 369
Query: 623 CSW-TRFQPGFLNRQIITLLSTLNVSDEIFWTVQA----------------SMASKLNLM 665
+W + + LN+Q I +L + + V A +M ++L
Sbjct: 370 RNWPSELKSASLNQQFIPILEAQSPEPDGMRRVMAEHLERALHADLGEQVAAMKEPMSLR 429
Query: 666 LVAS-----------DVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM-------- 706
L D + + L + A +L +GF + +LQ +
Sbjct: 430 LWIHQSGPSKNDRLLDGSTKFLAGLPDSNADKVAFLLDSGFDQKKMKYLQDIVWDMCKRK 489
Query: 707 ---LTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF---------VVI 754
L ++ C +I ++ + + + + + K Q +GF +++
Sbjct: 490 ADVLKTKMNITVPCSAYIYMA-ADFTSTLEEDEVHLSFSTKFQA-DGFSDTLLEGMDILV 547
Query: 755 AKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDEN 814
A+ P P D++ ++ V RPEL L D ++F KG P ++ SG D DGD+ +V WD+N
Sbjct: 548 ARVPAHLPSDIQRVKVVSRPELRKLKDVIIFSTKGGVPLAHKLSGGDYDGDMAWVCWDQN 607
Query: 815 LI 816
++
Sbjct: 608 IV 609
>gi|345568648|gb|EGX51541.1| hypothetical protein AOL_s00054g240 [Arthrobotrys oligospora ATCC
24927]
Length = 1615
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 159/374 (42%), Gaps = 77/374 (20%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG-----------YVFSDGIGKITPDL 562
K AR+ L FS+T +V E+D+ + DIK G Y +DG G +P +
Sbjct: 861 KLYARIALGFSTTTPSVVFDKNEIDYSIKDIKAKGLELGRDGKLPEYSLTDGCGLASPAV 920
Query: 563 AMEVAQILKLDGSP-PPSAYQIRYAGYKGVVACW------PAKDDGIRMSLRGSMKKFKS 615
VA+ L G P PPSA Q R KG+ W P + +R+ +R KF
Sbjct: 921 FRAVARQL---GLPYPPSAVQARIGAAKGL---WIMDPSIPLDSEELRIRIRPDQNKFDG 974
Query: 616 C-----HTSLEICSWTR-FQPGFLNRQIITLLSTLNVSDEIF-WTVQASMASKLNLMLVA 668
H +L+IC+ ++ +P LN Q I +L V++ ++ + +++ +
Sbjct: 975 ISLEPEHRTLDICNTSKPLKPSALNLQFIVILLHNGVTEATLEQLLREDIRNEVTELFNG 1034
Query: 669 S---DVAF-----EVLTASCAEQGNTAAIM---------------LSAGFKPQTEP---H 702
D AF E + S +++ A M ++AGF Q +
Sbjct: 1035 GRLDDGAFLRKYLERVKLSGSQRDGRAIAMKGRIPLGLAERAIDLINAGFTLQNQTLKDW 1094
Query: 703 LQGMLTYELGELKE---------CQCFIQVSESSL---ENCFSKHG--SRFAETKKLQVI 748
+ +LT LK+ CQ + S + + G S+F + K + I
Sbjct: 1095 FEKVLTDHCDTLKDKMRIRIPWSCQPYCVPDPSGKLKKGQVYLRFGPESKFIDPKTMMAI 1154
Query: 749 N---GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF---PQKGDRPHTNEASGSDL 802
+ G V++ +NP D++ + AVD PEL L D +VF P+ DR + SG D
Sbjct: 1155 DVLRGGVLVGRNPAHFASDIQKVTAVDVPELRFLTDVIVFPADPESNDRSLADYLSGGDY 1214
Query: 803 DGDLYYVTWDENLI 816
DGD + WD+ L+
Sbjct: 1215 DGDRVWTCWDQRLV 1228
>gi|440633788|gb|ELR03707.1| hypothetical protein GMDG_06341 [Geomyces destructans 20631-21]
Length = 1330
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 161/388 (41%), Gaps = 73/388 (18%)
Query: 496 SVLDIKNWMGEF-TAKN----IAKYAARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGY 549
+V + NW+ F KN K +R+ L S T+AT+ + TE+ D ++G
Sbjct: 603 TVKGLLNWLIPFYLEKNQKQPYLKLFSRISLGLSKTYATIPLRATEITFVRYDYCSKSGE 662
Query: 550 VFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGS 609
V +DG G+I+ LA +AQ LKLD +P SA+Q R G KG+ KD G + +++
Sbjct: 663 VMNDGCGQISRKLAHHIAQKLKLDYTP--SAFQARIGGAKGMWIV-DVKDFGDKTNIKIY 719
Query: 610 MKKFK---------SCHTSLEICSWTR-FQPGFLNRQIITLL------STLNVSDEIFWT 653
+ K H E+ W+R + LN Q + +L + + D +
Sbjct: 720 PSQVKWDNNSFFVDPSHRIFEVICWSRPVRSATLNLQFLPILEDRGRNNGKGMRDALSRV 779
Query: 654 VQASMASKLNLMLVASDV--AFEVLTASCA--------------------EQGNTAAIML 691
++ + +++ A D AF A QG ++L
Sbjct: 780 LENGLTYEISRQREAMDSPQAFRKWVRETAPRITDRNKLGQVGYEAGLPKSQGEKMNLLL 839
Query: 692 SAGFKPQTEPHLQGML---TYELGELKECQCFIQVSESS--------------------L 728
AGF P+ L+ + GE+ + + I V S+
Sbjct: 840 DAGFNPKELCFLRDLAWKANVARGEILKKKLNISVGRSAYMLMVVDFAGILGPREVHVGF 899
Query: 729 ENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
F + F +T + N +++A++P D++ + AV +PEL L D +VF +
Sbjct: 900 STAFKDESTDFCDTI---LSNMDILVARSPAHYTSDIQKVRAVFKPELSALKDVIVFSTR 956
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLI 816
GD P E SG D DGD+ +V W ++
Sbjct: 957 GDFPLAGELSGGDYDGDIAWVCWQTEIV 984
>gi|115400193|ref|XP_001215685.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191351|gb|EAU33051.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1285
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 124/503 (24%), Positives = 199/503 (39%), Gaps = 121/503 (24%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R L S T TV++ P ++ H + R V +DG ++ LA ++ IL +
Sbjct: 579 KLFQRTSLGLSKTFETVKLTPNQIIHLKDEPGRP--VMNDGCALMSRGLAKKICVILGIT 636
Query: 574 GSPPPSAYQIRYAGYKGVVACW-------PAKDDGIRMSLRGSMKKFKSC---------- 616
GS P SA+Q R AG KG+ W ++ I + + S K K
Sbjct: 637 GSIP-SAFQGRIAGAKGL---WMVDKHDSDVSEEDIWLQISDSQLKIKPHPAEWKTLIDP 692
Query: 617 -HTSLEICSWTR-FQPGFLNRQIITLLSTLN-VSDEIFWTVQASMASKLNLMLVASDVAF 673
+ E+ W++ P LN Q++ +L V + I +A M S + D A
Sbjct: 693 EKLTFEVVKWSKPLHPVSLNIQLLAILERGGPVRERIAELTRAGMQS------IWKDFA- 745
Query: 674 EVLTASC-------------------------AEQGNTAAIMLSAGFKPQTEPHLQGMLT 708
EVL +C A + AGFKP++ +L+ L
Sbjct: 746 EVLERNCPILCRSLIQKTKPPGEQDRRMEDWAASNSECVIRLCEAGFKPRSFRYLRHRLR 805
Query: 709 ---YELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF-------------- 751
EL E E + I+V S+ C + + K +V GF
Sbjct: 806 NCLRELLERYENELHIEVPLSTYAFCIA---DPYGVLKPDEVHFGFSSNWRDPQGQFEDN 862
Query: 752 ------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
V++A+ P P D++ + AV +PEL H D +VFP GD P ++ SG D DGD
Sbjct: 863 LLDGMDVLVARVPAHFPSDIQRVRAVWKPELRHFKDVIVFPTTGDVPLAHKLSGGDYDGD 922
Query: 806 LYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHV----NHQNLGQICNAHVVH------ 855
+V WD+ ++ + S P E P E LT H + Q++ + + + +
Sbjct: 923 TPWVCWDQEIVQNFQNSDLPRE-YPPEHFGLTNHSVPMRDIQSVDEFLQSAITYNLTLSS 981
Query: 856 ----ADRSEYGAFDE-----NCILLAKLAATAVDSPKTG-----------------KIVT 889
E A+DE N + LA L + VD+ K G +
Sbjct: 982 LGKCTIEHERLAYDESIGSPNAMKLASLLSHLVDARKAGTHHSEQAWHEFRKQVSPRARE 1041
Query: 890 MPSHLKPKKYPDFMEIEEYQTYK 912
+P++ P++ P+ I +Y ++
Sbjct: 1042 LPAYKNPQRRPERKNIVDYLLFE 1064
>gi|346978355|gb|EGY21807.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1394
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 158/369 (42%), Gaps = 73/369 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQILKL 572
K +R+ L + T+ T+ P ++ H DI ++G V +DG+ +++P A +A+ L L
Sbjct: 621 KLFSRLALS-NRTYPTIIFEPGQITHHAEDICSKSGKVMNDGVAEMSPKAAKAIAEYLGL 679
Query: 573 DGSPPPSAYQIRYAGYKGV--VACWPAKDDGIRMSLRGSMKKFK-----SCHTSLEICSW 625
+P SAYQ R+ KGV V P D + S +K++ H + E+ +
Sbjct: 680 TDTP--SAYQGRFGSAKGVWIVGTDPENKDDFEIETYPSQRKWECDFWDEDHRTFEVKTE 737
Query: 626 TR-FQPGFLNRQIITLLSTLNVS---------DEIFWTVQASMASKLNLMLVASD--VAF 673
R + LN Q I +L +V + I ++ ++ +L + D V F
Sbjct: 738 ARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRNAIAKCLRTTLKEELARQRSSMDDPVQF 797
Query: 674 EVLTASCAEQG-------------------NTAA---IMLSAGFKPQTEPHLQGM---LT 708
QG N A ++L AGF+P+ L+ M +
Sbjct: 798 RQWIHESFFQGYRNDRLRDQNIRFLAGLPDNEAERVNLLLDAGFQPKKLSFLREMSYKMA 857
Query: 709 YELGELKECQCFIQVSESS--------------------LENCFSKHGSRFAETKKLQVI 748
+ EL + + I+V S+ F +F++T ++
Sbjct: 858 FRKCELLKSKMNIKVGCSTYAKMVVDFKGVLEEGEIHLGFSTKFMDPDGQFSDT----LL 913
Query: 749 NGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
+G V++A+ P P D++ + AV RPEL HL D +VF KGD P + SG D DGD
Sbjct: 914 HGMDVLVARAPAHFPSDIQRVRAVFRPELRHLKDVIVFSIKGDSPLADLLSGGDYDGDQA 973
Query: 808 YVTWDENLI 816
+V WD ++
Sbjct: 974 WVCWDSTIV 982
>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
Length = 1745
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 122/487 (25%), Positives = 194/487 (39%), Gaps = 93/487 (19%)
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEV 566
+ +N K R+ L + T+ I +V ++ +F+DG G I+PDLA E+
Sbjct: 456 YKPENQLKLTVRLSLLNTPISPTINISEYQVIEDVG-------LFTDGCGFISPDLAREI 508
Query: 567 ------------------------AQILKLDGSPP--------PSAYQIRYAGYKGVVAC 594
Q++ D P PSA+QIR+ G KG++
Sbjct: 509 YRKIKQAESREKVHVFENAQYMVDVQMIYQDSDPVEDDMDDNVPSAFQIRFRGAKGMLLQ 568
Query: 595 WPAKDDGIRMSLRGSMKKFK-----------SCHTSLEICSWTRFQP---GFLNRQIITL 640
P GI LR SM KF +++ + ++ +P F N I+ +
Sbjct: 569 NPNVK-GI--VLRESMVKFNVDLDEDLDEEDESLSNIHVVGYS--EPSNFAFANSTILYM 623
Query: 641 LSTLNVSDEIFWTVQASMASKL--NLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQ 698
+S E F + +M +++ S+ L ++G+ A+ + K
Sbjct: 624 MSGCVDGGEKFEGIIMNMWKDYVNDILKTYSNEDTSQLMKKYFKEGDFHALNIFGLTKDV 683
Query: 699 TEPHLQGMLTYELGELKECQCFIQVSESSLENC----FSKHGSRFA----ETKKLQVING 750
L G +L LK IQ + C + F E L+ + G
Sbjct: 684 ALAFLAGPFRTQLLNLK---LPIQNARRVYGVCDPLEVLEPDEVFVRIRMEDGTLKTLEG 740
Query: 751 FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD-RPHTNEASGSDLDGDLYYV 809
+ I K PCL GD+R+L+A L +L + +VFP KG+ RP N +GSDLDGD Y V
Sbjct: 741 TIAITKEPCLHRGDLRLLKAKKIESLEYLSEVIVFPIKGEKRPIPNMITGSDLDGDKYLV 800
Query: 810 TWDENLIPPSKKSCPPM---ECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYG---A 863
WDE L+ + P E E + V +G + H+ YG +
Sbjct: 801 IWDEPLVSSFVQQFEPGNFDEEIEGEKRNFEPDVFKDWIG------LRHSYVDSYGYEWS 854
Query: 864 FDENCILLAKLA---ATAVDSPKTGKIVTMPSHLKP-----KKYPDFMEIEEYQTYK-SN 914
EN + +L+ AVD+PK GK + K KYP F + + + S
Sbjct: 855 KGENWKTMQRLSDIVNMAVDAPKKGKTFKAGAMEKDIVRNFPKYPHFHNSKTKEAVRVST 914
Query: 915 KILGRLY 921
++G++Y
Sbjct: 915 SVVGKMY 921
>gi|317031168|ref|XP_001392956.2| hypothetical protein ANI_1_2224074 [Aspergillus niger CBS 513.88]
Length = 1206
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 101/220 (45%), Gaps = 45/220 (20%)
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
G V++ ++P L GD++ + V P+ H L + +VF KG R ++ SG DLDGD+
Sbjct: 797 GMVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDI 856
Query: 807 YYVTWDENLIP-----PSK--KSCPPMECTPAE----AKPLTCHVNHQNLGQICNAHVVH 855
+ V WD + P P+ + P P E A+ + +LG I H++
Sbjct: 857 FNVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIM 916
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM----------- 903
AD+ G C LA+L +TAVD KTG V M K K + PDFM
Sbjct: 917 ADQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDFMALGPVARIHNK 976
Query: 904 ---EIEEY----------------QTYKSNKILGRLYRQI 924
E+EEY + Y+S KILG+LYR +
Sbjct: 977 SDIELEEYVIQAAYDEDDDMEPFHKYYRSEKILGKLYRGV 1016
>gi|134077480|emb|CAK40045.1| unnamed protein product [Aspergillus niger]
Length = 377
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 751 FVVIAKNPCLRPGDVRILEAVDRPELH---HLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
V++ ++P L GD++ + V P+ H L + +VF KG R ++ SG DLDGD++
Sbjct: 1 MVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDIF 60
Query: 808 YVTWDENLIP-----PSK--KSCPPMECTPAE----AKPLTCHVNHQNLGQICNAHVVHA 856
V WD + P P+ + P P E A+ + +LG I H++ A
Sbjct: 61 NVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMA 120
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFMEIEEYQTYKSNK 915
D+ G C LA+L +TAVD KTG V M K K + PD +Y Y+S K
Sbjct: 121 DQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDLYPFHKY--YRSEK 178
Query: 916 ILGRLYRQI 924
ILG+LYR +
Sbjct: 179 ILGKLYRGV 187
>gi|389627942|ref|XP_003711624.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351643956|gb|EHA51817.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1261
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 149/664 (22%), Positives = 255/664 (38%), Gaps = 132/664 (19%)
Query: 470 RYSFLAFSSNQLRDH--------SAWFFSKVGETSVLDIKNWMGEF-TAKN----IAKYA 516
R F A N+ + H S + F++ V + NW+ + KN K
Sbjct: 486 RIYFFAEDGNRFQSHHHAANASFSGYLFTRTA-LPVHSMLNWLLQLDLVKNQRQPWPKLF 544
Query: 517 ARMGLCFSSTHATVEIPPTEVDHELPDIKR-NGYVFSDGIGKITPDLAMEVAQILKLDGS 575
+R+ L S TH TV P E+ E D+ G V +DGIG ++ +A EV QIL +
Sbjct: 545 SRIQLGLSRTHPTVVFAPLEIHAEEHDLMSPAGNVMNDGIGLMSRSVAREVQQILGIQDL 604
Query: 576 PPPSAYQIRYAGYKGVVACWP-AKDDGIRMSLRGSMKKFK-----SCHTSLEICSWTR-F 628
P A Q R KG+ P + D + S +K+ S H +LEI + +
Sbjct: 605 P--CAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQRKWNCTSADSHHRTLEIKTHAKPL 662
Query: 629 QPGFLNRQIITLLSTLN-----VSDEIFWTVQASMASKLNLMLVA--------------- 668
+ LN Q + +L + + D I ++ S+ ++L + VA
Sbjct: 663 RSASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLRTELESVQVALRSPQQFLQWVHENS 722
Query: 669 ------SDVAFEV--LTASCAEQGNTAAIMLSAGFKPQTEPHLQ---------------- 704
+ +FEV L + A M+ AGF P+ + +LQ
Sbjct: 723 NHRQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCETLRE 782
Query: 705 ------GMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNP 758
GM TY L + V E + CFS+ + + L + + V++A++P
Sbjct: 783 KLNIKVGMSTYAL---MVVDFWGVVPEGEVHLCFSEKFTCDGFSGTL-LNDQEVLVARSP 838
Query: 759 CLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
D++ ++AV RPEL L D +VF + G+ + SG D DGD+ +V WD ++
Sbjct: 839 AHYVSDIQKVKAVFRPELKDLKDVIVFSRNGNVALADRLSGGDYDGDIAWVCWDSKIVDN 898
Query: 819 SKKSCPP----------MECTPAEAKPLTCHVN-----------------HQNLGQICNA 851
+ + P + P L + QN IC
Sbjct: 899 FQNAAVPDSPDLFRQGYLSKIPGTMSDLVRELGLEKGTGEMIARGFEFNMRQNFLGICTN 958
Query: 852 HVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS----HLKPKKYPDFMEIEE 907
D +LL+ L + VD K G + S ++ P F+E+
Sbjct: 959 FKERLCYKRKNVNDSVAVLLSTLVSNLVDQGKQGIVFDAGSWRRLQMELHPGPGFLELPL 1018
Query: 908 YQ--TYKSNKILGRLYRQIK------------GAYDENISVSSEVDINPVDIHYDTDL-E 952
Y+ +++ ++ + +K G + +++ S + H+D DL E
Sbjct: 1019 YKENSWRGTRLPEHIIDHLKFTVAKPLIDKELGDFSKSLQSKSGEKAH----HWDKDLVE 1074
Query: 953 VPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHS 1012
V ++ R+ K S + L+ L N ++ + + + R +GE + R+
Sbjct: 1075 V---CNYWDGMRSSK-SVEKLLDALKSDINAVAVLWKKVMAGARDGDRSRGEYRRRINEV 1130
Query: 1013 YSAF 1016
Y A+
Sbjct: 1131 YEAW 1134
>gi|4138610|emb|CAA09895.1| RNA-directed RNA polymerase [Triticum aestivum]
Length = 107
Score = 88.2 bits (217), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/107 (46%), Positives = 64/107 (59%), Gaps = 15/107 (14%)
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TC 838
PH NE SGSDLDGD+Y+V+WD +LIP + PM+ TPA + L T
Sbjct: 1 PHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYTPAPTETLDHDVMIEEVHEYFTN 58
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
++ +++LG I NAHVV ADR A CI LA+L + AVD PKTG
Sbjct: 59 YIVNESLGIIANAHVVFADREILKAESTPCIKLAELFSIAVDFPKTG 105
>gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4
gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 142/582 (24%), Positives = 230/582 (39%), Gaps = 125/582 (21%)
Query: 453 FKRVKSILSDGFNLCGRRYSFLAF-----SSNQLRDHSAW---FFSKVGETSVLDIKN-- 502
+ + K I +G + RRY F F + + R+ + +F + G T+ D++N
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327
Query: 503 -------------WMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDIK--- 545
+M T + A Y AR L S T +E+ TE+ ++ DI
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKT-KKLEVDMTEITVMQIDDIHCHD 386
Query: 546 --------RNG--YVFSDGIGKITPDLA------------MEVAQILKLDGSPPPSAYQI 583
+NG + SDG G I+ DLA M I PP QI
Sbjct: 387 QSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQI 446
Query: 584 RY----AGYKGVVAC---WPAKDDGIRMSLRGSMKKFK-------SCHTSLEICSWTRF- 628
R + KG+ P + +R S+ +K +K S SLE+ + +
Sbjct: 447 RMFNDGSAVKGIFLLNKNLPPQTVQVRPSM---IKVYKDKNLSNFSTFNSLEVVTTSNPP 503
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCA--EQGN- 685
+ L++ ++ LLS V ++ F + LN + + F+V A A GN
Sbjct: 504 KRAKLSKNLVALLSYGGVPNDFFLDIL------LNTLEKKKTIFFKVRAAGKAALHYGNM 557
Query: 686 ---TAAIMLSAGFKPQTEPHLQ----GMLTYELGELKECQCFIQVSESSLENCFSKHGSR 738
A M+ AG P EP+L+ +L E +LK + I S + +
Sbjct: 558 DDKNALQMIMAGI-PLDEPYLKHYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELK 616
Query: 739 FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHT 794
E L V++ +NP L GD+ IL+A L + FPQKG R
Sbjct: 617 EDEVSGLAKSQD-VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLG 675
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSKKSCP---------------PMECTPAEAKPLTCH 839
+E +G D DGD+Y+++ + L+ K S P P E +P + +
Sbjct: 676 DEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFK 735
Query: 840 VNHQN-------LGQICNAHVVHADRSEYGAFDENC----------ILLAKLAATAVDSP 882
+ + +GQ ++ + DR DEN + L + A+D+P
Sbjct: 736 IFLKTGFSPSSVIGQAADSWLAIMDRF-LTLGDENVKEKAEMKKKMLKLTDIYYDAIDAP 794
Query: 883 KTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
KTG V +P +K +P +M E +T+KS ILG ++ +
Sbjct: 795 KTGTEVNLPLDVKVDLFPHYM--ERNKTFKSTSILGLIFDTV 834
>gi|342884280|gb|EGU84517.1| hypothetical protein FOXB_04968 [Fusarium oxysporum Fo5176]
Length = 206
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 9/153 (5%)
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ- 568
+ IA A R+GL FSS I P + ++P+++ Y+F+DG G I LA E+A+
Sbjct: 5 RRIAAKAKRIGLLFSSATTVTTINPDRCE-DIPNVETADYIFTDGCGLIALKLANELARR 63
Query: 569 --ILKLDGSPPPSAYQIRYAGYKGVVACWP--AKDDGIRMSLRGSMKKFKSCHT-SLEIC 623
IL D PS +QIRY GYKGVV P K + + + LR SMKKF S +
Sbjct: 64 TRILLRDNRYTPSVFQIRYRGYKGVVIVDPRMTKQNPL-LKLRKSMKKFNGGEDHSFAVV 122
Query: 624 SWTR-FQPGFLNRQIITLLSTLNVSDEIFWTVQ 655
+++ F G+LN + I LL L +S E + Q
Sbjct: 123 EYSKPFSYGYLNDETIILLHALRISQETLLSKQ 155
>gi|156374435|ref|XP_001629812.1| predicted protein [Nematostella vectensis]
gi|156216821|gb|EDO37749.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 88.2 bits (217), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 16/105 (15%)
Query: 709 YELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRIL 768
YE+ L++ +C+ + S F + F K+ VI +NPC PGDVR+L
Sbjct: 21 YEV--LRQGECYFRPS------IFDEDEGDFQAANKVAVI-------RNPCYHPGDVRVL 65
Query: 769 EAV-DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
+ V ++PEL+HL DC+VFP +G RPH E SG+D+DGD ++VTWD
Sbjct: 66 KLVRNKPELNHLRDCIVFPVRGRRPHALECSGADMDGDKFFVTWD 110
>gi|358392113|gb|EHK41517.1| hypothetical protein TRIATDRAFT_321718 [Trichoderma atroviride IMI
206040]
Length = 1316
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 148/368 (40%), Gaps = 70/368 (19%)
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILK 571
+ K +R+ L S T TV++ ++ D+ V +DGIG+I+ LA +VA++L
Sbjct: 574 VTKLFSRLALSLSRTWPTVQLERHQIRIRTKDLGTGKMVMNDGIGRISASLAKKVAELLG 633
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDG--------------IRMSLRGSMKKFKSCH 617
L P S +Q R KG+ W D I S R FK H
Sbjct: 634 LTDCP--SCFQGRLGSAKGM---WLIDVDSEGDFEEDFEKDWVEIYPSQRKWECDFKDVH 688
Query: 618 -TSLEICSW-TRFQPGFLNRQIITLLSTLNVSDEIFWTVQAS----------------MA 659
+LEI +W + LN+Q I +L + + V +S M
Sbjct: 689 HRTLEIRNWPAELKSASLNQQFIPVLEARSKDSGLMRRVMSSHLQRALHADLGEQTDAMK 748
Query: 660 SKLNLMLVAS-----------DVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQG--- 705
++L L D + E L + A +L +GF + +L+
Sbjct: 749 DTMSLRLWIHQSGPSRNDRLLDGSAEFLAGLPNNSADKVAFLLDSGFDQKRLKYLKDAVL 808
Query: 706 --------MLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF------ 751
L ++ C ++ ++ + + + + + K QV GF
Sbjct: 809 DIYQKKADTLKTKMNITVPCSAYVYMA-ADFSSTLEEGEVHLSFSTKFQV-EGFSDTLLE 866
Query: 752 ---VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
+++A+ P P D++ + V RPEL L D ++F KG P ++ SG D DGD+ +
Sbjct: 867 QMDILVARAPAHLPSDIQRVRVVSRPELRRLKDVIIFSTKGSVPLADKLSGGDYDGDIAW 926
Query: 809 VTWDENLI 816
V WD++++
Sbjct: 927 VCWDQSIV 934
>gi|391343492|ref|XP_003746043.1| PREDICTED: uncharacterized protein LOC100902078 [Metaseiulus
occidentalis]
Length = 1371
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 157/658 (23%), Positives = 267/658 (40%), Gaps = 113/658 (17%)
Query: 463 GFNLCGRRYSFLAFSSNQLRDHSAWFFS-KVGET-SVLDIKNWMGEFTAKNIAKYAARMG 520
G + G+ Y FL S +Q D S W ++ + G+T ++ ++ +G N+A+ A
Sbjct: 466 GIKIAGKTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRERLG--ITGNLARRIAVQD 523
Query: 521 LCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSA 580
L F+ V I P+ V E D+ F GIG+I+ V + + SA
Sbjct: 524 LVFAEALGAVSIDPSWVSEESEDVP-AASDFKHGIGRISEAALRTVVENCHWSRTLC-SA 581
Query: 581 YQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITL 640
++ + G +G + P+ + G R+ R S +S ++L + + + +R +I+
Sbjct: 582 IRVIHGGRRGTLVYDPSLE-GSRIIYRKSQTVIRSEDSTLYLIGRSEMKNAAFDRTLIST 640
Query: 641 LS------TLNVSDEIFWT-VQASMASKLNLMLVASDV---AFEVLTASCAEQGN----- 685
LS T S E F T + + L+L + V A E + +G
Sbjct: 641 LSSKADGLTEEFSVEDFLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFRKGEDLYGY 700
Query: 686 --------TAAIMLSAGFKPQTEPHLQGMLTY---------ELGELKECQCFIQVSESSL 728
A+ A + L+ +T ELG L+E + FIQVS
Sbjct: 701 DKRGDGLFRQAVRCKALKALRDLKKLKQHMTNAYEIMPVVDELGLLEEGEVFIQVSSPGG 760
Query: 729 ENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPE----LHHLCDCLV 784
+ L+V++G +V+A+ + + R + AV+RP+ L HL +C+V
Sbjct: 761 D---------------LRVLSGDLVLARKDAMHLEEFRRVTAVNRPDVVGALGHLFNCVV 805
Query: 785 FPQK-GDRP---HTNEAS-GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL--T 837
P K G RP EAS + D L DE K++ PP + A + +
Sbjct: 806 LPSKGGSRPLEFLAREASYAGESDIILIASHPDEEPAFLFKRNDPPRSTSIAVGSEVDAS 865
Query: 838 C--------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG--KI 887
C ++ + + AD A E+CI + + +D + G ++
Sbjct: 866 CDTETHYFNYLAYVSFNDFEEVFCALADSLPQHASSESCIRVG-VQRRLLDKYRRGGREV 924
Query: 888 VTMPSHLKPKKYPDFME-IEEYQTYKSNKILGRLYRQ---IKGAYDENISVSSEVDINPV 943
+P K +P F+E I + +TY S + LG +YR+ I Y E+ + +E
Sbjct: 925 APLP---KVVNFPHFLEKISDRRTYCSARPLGHIYRKGRLIDTEYFEDTQMMTE------ 975
Query: 944 DIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG 1003
D+ + +L V GS F A + G L G+ Y ++ E + + ++ R Q
Sbjct: 976 DLTFQHELRVEGSEAFAEIAARDIRQFRGDLEGIASLYGISVDE---VLTGTIFSDRGQH 1032
Query: 1004 ELQER-----------LKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWY 1050
ER +KH R++F++ EK +E VL QK SA+Y
Sbjct: 1033 SSNERRSDIEAAVKLQVKHLALICRRKFKKGMEKA--------SELEVL--QKISAYY 1080
>gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3
gi|330251848|gb|AEC06942.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 992
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 130/591 (21%), Positives = 231/591 (39%), Gaps = 128/591 (21%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW--------FFSKVGETSVLDIKN- 502
++ K I +G + RRY F F + +F + T+ +D++N
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326
Query: 503 --------------WMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD----- 543
+M T ++ Y +R L S T T+E+ T + E D
Sbjct: 327 YIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKT-KTLEVDMTGITFEQIDDIHCH 385
Query: 544 -------IKRNGY--VFSDGIGKITPDLA-MEVAQILKLD-------------------- 573
+ +NG + SDG G I+ DLA M I K
Sbjct: 386 DQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPC 445
Query: 574 GSPPPSAYQIR--YAGY--KGVVAC---WPAKDDGIRMSLRGSMKKFK-------SCHTS 619
G PP Q R Y GY KG P + +R S+ +K ++ S S
Sbjct: 446 GQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSM---IKVYEDRTLSNLSTFNS 502
Query: 620 LEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA 678
LE+ + + + L+R ++ LLS V ++ F + + + + + AF+
Sbjct: 503 LEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAIN 562
Query: 679 SCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGS- 737
+Q I++ P EP+L+ L+Y L K + ++ ++ + G+
Sbjct: 563 YGDDQYTADMILVGI---PLDEPYLKDRLSYLL---KTERNALKAGRFPIDESYYIMGTV 616
Query: 738 -RFAETKKLQV--------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLV 784
E K+ ++ I+G V++ +NP L GD+ +L+A L +
Sbjct: 617 DPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVF 676
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT-PAEA----KPLT-- 837
FPQKG R +E +G D DGD+Y+++ + L+ K S P + + P++ KP
Sbjct: 677 FPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELS 736
Query: 838 -----------------CHVNHQNLGQIC-----NAHVVHADRSEYGAFD--ENCILLAK 873
C + + C + + D S ++ +N + L
Sbjct: 737 EEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLID 796
Query: 874 LAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
+ A+D+PK G V +P L+ K +P +ME + + ++S ILG ++ +
Sbjct: 797 IYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTV 847
>gi|342876307|gb|EGU77937.1| hypothetical protein FOXB_11547 [Fusarium oxysporum Fo5176]
Length = 821
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 158/387 (40%), Gaps = 64/387 (16%)
Query: 522 CFSSTHATVEIPPTEVDHELPDIKR-NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSA 580
C S T TV + + H DI+ NG +DGIG+I L EV ++ LD P +A
Sbjct: 121 CLSKTIPTVLLMGKSIRHRHTDIESSNGTPMNDGIGRIFHSLLREVRDVMGLDFLP--TA 178
Query: 581 YQIRYAGYKGV--VACWPAKDDGIRMSLRGSMKKFK-----SCHTSLEICSWTRFQ-PGF 632
Q R G KG+ + P D + + S +K+ H +LE+ S + + P
Sbjct: 179 IQARIGGAKGLWMMDLSPYPSDERWIEIYPSQRKWHCNWSDPAHRTLEVVSVSSYTGPAS 238
Query: 633 LNRQIITLLSTLNVSDEIFWTV----------------QASMASKLNLMLVASDVAFEVL 676
LN Q I +L + ++ T +A+M + +F
Sbjct: 239 LNLQFIPILEERAIDRKLMRTTICERIEKHRRNDLGNAKAAMEIPEVFRKWIHETSFTTF 298
Query: 677 TAS-----------CAEQGNTAAIMLSAGFKPQTEPHLQGML---TYELGELKECQCFIQ 722
S A+ T + + GF+P+ L M+ + + E + I+
Sbjct: 299 GDSQDGTSWFVGGLPADWPGTMSFLADGGFEPRRLDFLNTMMFNHQKQRWKQMETKLHIK 358
Query: 723 VSESS----------------LENCFSKHGSRFAETKKLQVINGF-VVIAKNPCLRPGDV 765
+++S+ ++ CFS +T L + GF V++ + P P D+
Sbjct: 359 IAKSTSALMTIDFQGVLAPNEVQLCFSPAFDDGQQT--LDDLGGFDVLVGRCPAHLPSDI 416
Query: 766 RILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPP 825
+ + AV +PEL H + ++F GD P N+ SG D DGD +V WD +++ K + P
Sbjct: 417 QKVNAVFKPELRHFKNVIIFSSLGDEPLANKLSGGDYDGDKAWVCWDADIVDNFKSTDVP 476
Query: 826 MECTPAEAKPLTCHVNHQNLGQICNAH 852
T E N Q LG + + +
Sbjct: 477 SPHTFKEY----FQPNTQTLGILASRY 499
>gi|401412157|ref|XP_003885526.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
gi|325119945|emb|CBZ55498.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
Length = 1367
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 106/425 (24%), Positives = 178/425 (41%), Gaps = 90/425 (21%)
Query: 305 SFEIMFLVNAVMHKGILNQHQLSDSFF--DLLRCQPRE-VIVTALKHIYS-------YKR 354
+F++ ++ GI+ Q + F LL +P + ++ AL + + +
Sbjct: 428 AFQLWARCQQLLTWGIVPSRQAVERRFLDSLLEARPEDSAVLAALDEVRNCGLGSRMGRI 487
Query: 355 PVFDAYEKLKDVQEC-----LIKNPKLNEGPKNIDDIAEVRRLVITPTKA-----YWFLE 404
P+ D + L + L + P L G V L+ TP K Y L
Sbjct: 488 PIRDPVQALNTYRHAARWMRLERGPPLAFGVNQAAAGIPVLHLLATPLKVLVRGIYCELG 547
Query: 405 SK-------DVADRFL-RVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRV 456
S+ +VA L RV F++E + M++++ +Q + +R+
Sbjct: 548 SRVTRQYAREVATGLLVRVAFVEEDGRPMSSSL---------------HRAQDESLQERM 592
Query: 457 KSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET--SVLDIKNWMGEF-TAKNIA 513
+ ++ G ++ RY F A S +QLR+ W G+T S I + +G F ++ +
Sbjct: 593 RLMMVGGLSVGHERYKFFAASLSQLREGCCWMIRVSGDTRLSAEAILSRLGVFDSSISPG 652
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG------------------------- 548
R+G+CFSST ++I E+ +PD+ +
Sbjct: 653 VLTKRLGVCFSSTLPAIDIRDEEM-LLIPDVTSSAAAPTAREEAAENEGRQARARPIPLA 711
Query: 549 -----YVFSDGIGKITPDLAME-VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
+VF+DG G I+ DL VA++ L S SA+QIR G KG++ PA +
Sbjct: 712 VDSPEFVFTDGSGAISLDLWRRIVARLPALHTS---SAFQIRLGGIKGMLVLHPAFPRPV 768
Query: 603 ---------RMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWT 653
+ + SM+KF S LE+ ++R P +LNRQ+I LL TL V +F
Sbjct: 769 PHHPAESLKHILVSQSMQKFHSSSRCLEVNDFSRRFPYYLNRQVILLLDTLGVGFPVFER 828
Query: 654 VQASM 658
+Q M
Sbjct: 829 LQKRM 833
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 845 LGQICNAHVVHADRSE-YG--------AFDENCILLAKLAATAVDSPKTGKIVTMPSHLK 895
LG++ AH+ A R + YG A C+ LA LA AVD+PKTG +V MP L
Sbjct: 1277 LGRVSKAHMRLAHRPDVYGNRNWRQAKAMHPKCLKLAALATLAVDAPKTGAVVVMPQELA 1336
Query: 896 PKKYPDFMEIEEYQTYKSNKILGRLYR 922
++ P FM KS L+R
Sbjct: 1337 CRQIPHFMATATVSLKKSLPRTESLFR 1363
>gi|242211203|ref|XP_002471441.1| predicted protein [Postia placenta Mad-698-R]
gi|220729496|gb|EED83369.1| predicted protein [Postia placenta Mad-698-R]
Length = 865
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 134/323 (41%), Gaps = 35/323 (10%)
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSC--HTSLEICSWTRFQPGFLNRQIITLLSTLNVS 647
GV+ P + + R S +KF + +T + + G LN II LL++L V+
Sbjct: 7 GVLMLHPELNQDHHVHFRASQRKFSATRDNTFSMVDHSVPYAFGRLNNDIIVLLASLGVT 66
Query: 648 DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGML 707
E Q S + +VAF L A Q + A +L G + Q G+
Sbjct: 67 PEALLAKQESYHQWIRAASSDWEVAFNFLCA--VGQYDFAERLLLDGIEAQ------GVQ 118
Query: 708 TYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRI 767
T +++ CQ +SE + K SR K + F V LR G+V
Sbjct: 119 T----KIRACQ----MSELASFKKNEKFRSRMIILKSRLL---FGVCDPYGVLREGEVH- 166
Query: 768 LEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP---------P 818
L AVD P+L HL DC+VF KG R + +SG DLDGD + V WD +L+P P
Sbjct: 167 LWAVDHPKLAHLVDCVVFSSKGKRAAPSMSSGGDLDGDRFLVMWDPDLVPKKVAESYTYP 226
Query: 819 SKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATA 878
+ K + T A+ N L +I H S GA + C L L + A
Sbjct: 227 APKERVGTQVTRADLAKHFAAYNTMALAKITALHARWVRCSPKGAMGDECQELNALHSQA 286
Query: 879 VDSPKTGKIVTMPSHLKPKKYPD 901
VD G + +P L PD
Sbjct: 287 VD----GAPIKIPERLLSPPDPD 305
>gi|297738765|emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 130/521 (24%), Positives = 210/521 (40%), Gaps = 110/521 (21%)
Query: 503 WMGEFTAKNIAKYAARMGLCFSST------HATVEIPPTEVDHELPDIKRNGYV------ 550
+M ++AKY AR L S T +TV I +D E P +G+V
Sbjct: 295 FMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNI--QRIDDE-PGRDEDGHVVYDEDW 351
Query: 551 ----FSDGIGKITPDLAMEVAQIL-----KLDGSPPPSAYQIRY----AGYKGVVAC--- 594
+DG G I+ DLA+ L +G+ P Q R KG +
Sbjct: 352 KPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDPLLIQCRLFNNGCAVKGTLLLNRK 411
Query: 595 WPAKDDGIRMSLRGSMKKFKSCHT----SLEICSWTRFQP--GFLNRQIITLLSTLNVSD 648
P + IR S+ K T S+EI + T QP +L++ +I LLS V +
Sbjct: 412 LPPRTIQIRPSMIKVETDPKLSDTQTVNSVEI-NGTSNQPRRSYLSKYLIALLSYGGVPN 470
Query: 649 EIFW-----------TVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKP 697
E F +VQ+S + L + L ++ ++T M+ +G P
Sbjct: 471 EYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTR-----------MILSGI-P 518
Query: 698 QTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSR--FAETKKLQV-------- 747
EP L L++ + E ++ ++V + + +CF G+ K +V
Sbjct: 519 IDEPFLHHCLSFMVNEERKG---LRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQ 575
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLD 803
+ G V++ K+P L GD+ +L A L + FP KG R +E + SD D
Sbjct: 576 VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFD 635
Query: 804 GDLYYVTWDENLIPPSKKSCP--------------PMECTPAEAKP------LTCHVNHQ 843
GD+Y+V+ ++ L+ + S P P + +P E + LT
Sbjct: 636 GDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTS 695
Query: 844 N-LGQICNAHVVHADR---------SEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
+ +G + +V DR E + L + A+D+PK+G V +
Sbjct: 696 SAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKE 755
Query: 894 LKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISV 934
LK +K+P FM E +Y S ILG++Y ++ EN S
Sbjct: 756 LKAEKFPHFMGRE--SSYHSTSILGQIYDAVESFQPENQST 794
>gi|367049126|ref|XP_003654942.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
gi|347002206|gb|AEO68606.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
Length = 1373
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 157/359 (43%), Gaps = 60/359 (16%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQILKL 572
K +R+ L S T TV P ++ H DI G + +DGIG+++ +A ++ L L
Sbjct: 628 KLFSRIQLGLSKTFPTVTFEPNQIRHRTDDILSPAGKIMNDGIGRMSRSVARKIRDALGL 687
Query: 573 DGSPPPSAYQIRYAGYKG--VVACWPAKDDGIRMSLRGSMKKFK-----SCHTSLEICS- 624
S PSA Q R KG ++ A DD + S +K+K + H +LEI S
Sbjct: 688 --SDIPSAIQGRMGSAKGMWLMDVADAGDDDW-IETYPSQRKWKCDDADALHRTLEIRSV 744
Query: 625 WTRFQPGFLNRQIITLL----------------STLNVSDEIFWTVQASMASKLNLMLVA 668
T +P LN Q + +L +N + F + +A++ L
Sbjct: 745 STELKPAALNLQFLPVLEDRAKDKARMRRAIAARLMNDLKKQFDSQKAAVERPLQFRQWV 804
Query: 669 SDVA-----------FEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM---LTYELGEL 714
++ L +G + +L++GF + + ++Q + L + E+
Sbjct: 805 NECTNSRSERVRHGQVPFLGGLPENKGEVLSFLLNSGFD-RRQKYIQDLAFDLQKQRCEV 863
Query: 715 KECQCFIQVSESSL------------ENCF-----SKHGSRFAETKKLQVINGFVVIAKN 757
+ I V S+ EN SK +T + + + V++A++
Sbjct: 864 LRTKLNIHVGRSAYMFMVVDFWGVLEENEVHVGFSSKFRDDVDDTTYMLLTDCDVLVARS 923
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
P P D++ + AV +P+LH L D +VFP KGD P ++ SG D DGD+ +V WD +++
Sbjct: 924 PAHFPSDIQKVRAVFKPQLHALKDVIVFPAKGDIPLADKLSGGDYDGDMAWVCWDPDIV 982
>gi|322695803|gb|EFY87605.1| Rnai Polymerase [Metarhizium acridum CQMa 102]
Length = 685
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/423 (24%), Positives = 172/423 (40%), Gaps = 89/423 (21%)
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKG--VVACWPAKDDGIRMSLRG 608
+DGIG+I+ LAM++A L L + P A+Q R G KG ++ P DG +
Sbjct: 1 MNDGIGRISKALAMKIASKLGL--TELPCAFQARLGGAKGMWIIDSDPILGDGDWIVTYA 58
Query: 609 SMKKFK-----SCHTSLEICSWTRF-QPGFLNRQIITLLSTLNVSD-EIFWTVQASMASK 661
S K+ S H + E+ W++ +P LN+Q I +L ++ ++ T+ A +
Sbjct: 59 SQIKWDCDHEDSHHRTFEVKEWSKEPRPASLNQQFIPVLEARAINPYKMRDTISAHLRRG 118
Query: 662 LNLMLVASDVAFE------------------VLTASCAEQG-------NTAAIMLSAGFK 696
L L A A E L S A G A++L +GF
Sbjct: 119 LLEELAAQRTAMEDSAELRLWLQQGGGSKPEGLDNSMAFLGCLPRDPKKVMAVLLDSGFH 178
Query: 697 PQTEPHLQGM-----------LTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKL 745
P++ +LQ + L ++ C ++ + + + + + K
Sbjct: 179 PKSCKYLQDLFRDAARDRAAFLKAKMKICVPCSAYL-LMVVDFSSTLEEDEVHVSFSTKF 237
Query: 746 QVINGF---------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNE 796
QV +GF V++A+ P P D++ ++ V RP+L HL D +VF KG ++
Sbjct: 238 QV-DGFCDTLLEGMDVLVARAPSHLPSDIQRVKVVSRPQLRHLKDVIVFSTKGRSSLADK 296
Query: 797 ASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQI-----CNA 851
SG D DGD +V WD+ ++ + P + T E +N +++ QI +
Sbjct: 297 LSGGDYDGDRAWVCWDQEIVENFCNAAMPGDDTDPEKLGHLRKLN-RSMAQIRQEETGDE 355
Query: 852 HVVHADRSEYGAFD-------------------------ENCILLAKLAATAVDSPKTGK 886
V E AF+ +N ++L++L VD PK G
Sbjct: 356 RVCAKFLRESFAFNMQPFLLGKCTDYKERYSYHTKSVSSKNILILSRLLGCLVDQPKQGY 415
Query: 887 IVT 889
I T
Sbjct: 416 IFT 418
>gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
Length = 905
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 140/578 (24%), Positives = 233/578 (40%), Gaps = 126/578 (21%)
Query: 453 FKRVKSILSDGFNLCGRRYSFLAF-----SSNQLRDHSAW---FFSKVGETSVLDIKN-- 502
+ + K I +G + RRY F F + + R+ + +F + G T+ D++N
Sbjct: 273 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 332
Query: 503 -------------WMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDIK--- 545
+M T + A Y AR L S T +E+ TE+ ++ DI
Sbjct: 333 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKT-KKLEVDMTEITVMQIDDIHCHD 391
Query: 546 --------RNG--YVFSDGIGKITPDLA------------MEVAQILKLDGSPPPSAYQI 583
+NG + SDG G I+ DLA M I PP QI
Sbjct: 392 QSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQI 451
Query: 584 RY----AGYKGVVAC---WPAKDDGIRMSLRGSMKKFK-------SCHTSLEICSWTRF- 628
R + KG+ P + +R S+ +K +K S SLE+ + +
Sbjct: 452 RMFNDGSAVKGIFLLNKNLPPQTVQVRPSM---IKVYKDKNLSNFSTFNSLEVVTTSNPP 508
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCA--EQGN- 685
+ L++ ++ LLS V ++ F + LN + + F+V A A GN
Sbjct: 509 KRAKLSKNLVALLSYGGVPNDFFLDIL------LNTLEKKKTIFFKVRAAGKAALHYGNM 562
Query: 686 ---TAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAET 742
A M+ AG P EP+L+ L+ L K+ ++ + ++ + G+ T
Sbjct: 563 DDKNALQMIMAGI-PLDEPYLKHYLSKLLKLEKDD---LKAGKLPIDESYYLMGT-VDPT 617
Query: 743 KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEAS 798
+L+ V++ NP L GD+ IL+A L + FPQKG R +E +
Sbjct: 618 GELKEDEVCVIL--NPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIA 675
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCP---------------PMECTPAEAKPLTCHVNHQ 843
G D DGD+Y+++ + L+ K S P P E +P + + + +
Sbjct: 676 GGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLK 735
Query: 844 N-------LGQICNAHVVHADRSEYGAFDENC----------ILLAKLAATAVDSPKTGK 886
+GQ ++ + DR DEN + L + A+D+PKTG
Sbjct: 736 TGFSPSSVIGQAADSWLAIMDRF-LTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGT 794
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
V +P +K +P +M E +T+KS ILG ++ +
Sbjct: 795 EVNLPLDVKVDLFPHYM--ERNKTFKSTSILGLIFDTV 830
>gi|225557198|gb|EEH05485.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1388
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 189/474 (39%), Gaps = 103/474 (21%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN-GYVFSDGIGKITPDLAMEVAQILKL 572
K R+ L S T ATV + E+ + +K G V +DG ++ L M VA L L
Sbjct: 661 KLFQRLHLGLSRTLATVILRREEIIY----VKNPPGTVMNDGCALMSKSLGMAVASALGL 716
Query: 573 DGSPPPSAYQIRYAGYKGVVAC------WPAKDDGIRMSLRGSM-----------KKFKS 615
DG P + +Q R +G KGV + D G + + S K
Sbjct: 717 DGHP--AIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQITQSQLKIHPAPPHDTKPMDD 774
Query: 616 CHTSLEICSWTR-FQPGFLNRQIITLLSTLNV-SDEIFWTVQASMASK----LNLMLVAS 669
+ E+ W+R P LN Q++ +L + +D I ++ M+S L +L +S
Sbjct: 775 TQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIKQEMSSFYDEFLRTLLCSS 834
Query: 670 DVAFE--------VLTASCAEQ------------GNTAAIMLSAGFKPQTEPHL----QG 705
V + S Q A ++L AGF P P+L +
Sbjct: 835 GVECRSWLQKMKWITNGSSKRQPKRTDNFFPSQYAEQAIMLLDAGFLPLKLPYLTKIFRR 894
Query: 706 MLTYELGELKECQCFIQVSESSLENC----------------FSK---HGSRFAETKKLQ 746
+L L LK+ + I VS+S+ C FS+ HGS E +
Sbjct: 895 LLQDYLDNLKKLK--ITVSQSTFAYCVADPFGVLRPDEVHLGFSREWEHGSAGTELHDID 952
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
V+ +A+ P D++ +V + EL H+ D +VFP GD P + SG D DGD
Sbjct: 953 VL-----LARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQ 1007
Query: 807 YYVTWDENLIPPSKKS-CPPMECTPAEAKPL-TCHVNHQNLGQ----ICNAHVVHADRSE 860
+V WD ++ K + P AE+ L +C +G + NA + S+
Sbjct: 1008 CWVCWDPIIVREFKSTEFDPGTVPSAESLGLRSCSTLMSEIGSTEEFLTNAFRFNVKPSK 1067
Query: 861 YG---------AFDENCIL------LAKLAATAVDSPKTGKIVTMPS--HLKPK 897
G + EN I LA L + VDS K G +T + +LKPK
Sbjct: 1068 LGQCTIERETYCYHENNIASPMAVKLAWLLSYLVDSKKAGLELTDDAWEYLKPK 1121
>gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 126/567 (22%), Positives = 230/567 (40%), Gaps = 106/567 (18%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW--------FFSKVGETSVLDIKNW 503
++ K I +G + RRY F F + +F + T+ +D++N
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326
Query: 504 MGEFTAKNIAKYAARMGLCFSSTHATVE--IPPTEVDHELPDI-KRNGY--VFSDGIGKI 558
F K++ + ARM +T +++ + +D + D+ +NG + SDG G I
Sbjct: 327 Y-IFAGKSM--HEARMHFMHVNTLSSLPNYMSRYSIDQDDKDVLDKNGKPCIHSDGTGYI 383
Query: 559 TPDLA-MEVAQILKLD--------------------GSPPPSAYQIR--YAGY--KGVVA 593
+ DLA M I K G PP Q R Y GY KG
Sbjct: 384 SEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFL 443
Query: 594 C---WPAKDDGIRMSLRGSMKKFK-------SCHTSLEICSWTRF-QPGFLNRQIITLLS 642
P + +R S+ +K ++ S SLE+ + + + L+R ++ LLS
Sbjct: 444 TNKKLPPRTVQVRPSM---IKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLS 500
Query: 643 TLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPH 702
V ++ F + + + + + AF+ +Q I++ P EP+
Sbjct: 501 YGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTADMILVGI---PLDEPY 557
Query: 703 LQGMLTYELGELKECQCFIQVSESSLENCFSKHGS--RFAETKKLQV--------INGFV 752
L+ L+Y L K + ++ ++ + G+ E K+ ++ I+G V
Sbjct: 558 LKDRLSYLL---KTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDV 614
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYY 808
++ +NP L GD+ +L+A L + FPQKG R +E +G D DGD+Y+
Sbjct: 615 LVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYF 674
Query: 809 VTWDENLIPPSKKSCPPMECT-PAEA----KPLT-------------------CHVNHQN 844
++ + L+ K S P + + P++ KP C +
Sbjct: 675 ISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIG 734
Query: 845 LGQIC-----NAHVVHADRSEYGAFD--ENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
+ C + + D S ++ +N + L + A+D+PK G V +P L+ K
Sbjct: 735 MAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIK 794
Query: 898 KYPDFMEIEEYQTYKSNKILGRLYRQI 924
+P +ME + + ++S ILG ++ +
Sbjct: 795 NFPHYMERDPKRDFRSTSILGLIFDTV 821
>gi|302411624|ref|XP_003003645.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357550|gb|EEY19978.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1283
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 157/369 (42%), Gaps = 73/369 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQILKL 572
K +R+ L + T+ T+ P ++ H DI ++G V +DG+ +++P A +A+ L L
Sbjct: 621 KLFSRLALS-NRTYPTIVFEPGQIIHHAEDICSKSGKVMNDGVAEMSPKAAKVIAEYLGL 679
Query: 573 DGSPPPSAYQIRYAGYKGV--VACWPAKDDGIRMSLRGSMKKFK-----SCHTSLEICSW 625
+P SAYQ R+ KGV V P D + S +K++ H + E+ +
Sbjct: 680 ADTP--SAYQGRFGSAKGVWIVGTDPDNKDDFEIETYPSQRKWECDFWDEDHRTFEVKTE 737
Query: 626 TR-FQPGFLNRQIITLLSTLNV---SDE----------IFWTVQASMASKLNLML----- 666
R + LN Q I +L +V +D+ + T++ +A + + M
Sbjct: 738 ARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRNAIAGCLRTTLKEELARQRSSMNDPVQF 797
Query: 667 ---------------VASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM---LT 708
D L + ++L AGF+P+ L+ + +
Sbjct: 798 RQWIHENFFQGYRSDRVRDQNIRFLAGLPDNEAERVNMLLDAGFRPKKLSFLREVSYKMA 857
Query: 709 YELGELKECQCFIQVSESS--------------------LENCFSKHGSRFAETKKLQVI 748
+ EL + + I+V S+ F +F++T ++
Sbjct: 858 FRKCELLKSKMNIKVGCSTYAKMVVDFKGVLEEGEIHLGFSTKFMDPDGQFSDT----LL 913
Query: 749 NGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
+G V++A+ P P D++ + AV RPEL HL D +VF KGD P + SG D DGD
Sbjct: 914 HGMDVLVARAPAHFPSDIQRVRAVFRPELRHLKDVIVFSIKGDSPLADLLSGGDYDGDQA 973
Query: 808 YVTWDENLI 816
+V WD ++
Sbjct: 974 WVCWDPAIV 982
>gi|325093828|gb|EGC47138.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1387
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 123/472 (26%), Positives = 190/472 (40%), Gaps = 99/472 (20%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDH--ELPDIKRNGYVFSDGIGKITPDLAMEVAQILK 571
K R+ L S T ATV + E+ + + P G V +DG ++ L M VA L
Sbjct: 661 KLFQRLHLGLSRTLATVILRREEIIYVKDPP-----GTVMNDGCALMSKSLGMAVASALG 715
Query: 572 LDGSPPPSAYQIRYAGYKGVVAC------WPAKDDGIRMSLRGSM-----------KKFK 614
LDG P + +Q R +G KGV + D G + + S K
Sbjct: 716 LDGHP--AIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQITQSQLKIYPAPPHDTKPMD 773
Query: 615 SCHTSLEICSWTR-FQPGFLNRQIITLLSTLNV-SDEIFWTVQASMASK----LNLMLVA 668
+ E+ W+R P LN Q++ +L + +D I ++ M+S L +L +
Sbjct: 774 DTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIRQEMSSFYDEFLRTLLCS 833
Query: 669 SDVAFE--------VLTASCAEQ------------GNTAAIMLSAGFKPQTEPHL----Q 704
S V + S Q A ++L AGF P P+L +
Sbjct: 834 SGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAIMLLDAGFLPLKLPYLTKIFR 893
Query: 705 GMLTYELGELKECQCFIQVSESSLENC----------------FSKHGSRFAETKKLQVI 748
+L L LK+ + I VS+S+ C FS+ + + +L I
Sbjct: 894 RLLQDYLDNLKKLK--ITVSQSTFAYCVADPFGVLRPDEVHLGFSREWEHGSASTELHDI 951
Query: 749 NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
+ V++A+ P D++ +V + EL H+ D +VFP GD P + SG D DGD +
Sbjct: 952 D--VLLARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCW 1009
Query: 809 VTWDENLIPPSKKS-CPPMECTPAEAKPL-TCHVNHQNLGQ----ICNAHVVHADRSEYG 862
V WD ++ K + P AE+ L +C +G + NA + S+ G
Sbjct: 1010 VCWDPIIVREFKSTEFDPGTVPSAESLGLRSCSTLMSKIGSTEEFLTNAFRFNVKPSKLG 1069
Query: 863 ---------AFDENCIL------LAKLAATAVDSPKTGKIVTMPS--HLKPK 897
+ EN I LA L + VDS K G +T + +LKPK
Sbjct: 1070 QCTIERETYCYHENNITSPMAVKLAWLLSYLVDSKKAGLELTDDAWEYLKPK 1121
>gi|240277746|gb|EER41254.1| RNA-directed RNA polymerase [Ajellomyces capsulatus H143]
Length = 1317
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 123/472 (26%), Positives = 190/472 (40%), Gaps = 99/472 (20%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDH--ELPDIKRNGYVFSDGIGKITPDLAMEVAQILK 571
K R+ L S T ATV + E+ + + P G V +DG ++ L M VA L
Sbjct: 591 KLFQRLHLGLSRTLATVILRREEIIYVKDPP-----GTVMNDGCALMSKSLGMAVASALG 645
Query: 572 LDGSPPPSAYQIRYAGYKGVVAC------WPAKDDGIRMSLRGSM-----------KKFK 614
LDG P + +Q R +G KGV + D G + + S K
Sbjct: 646 LDGHP--AIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQITQSQLKIYPAPPHDTKPMD 703
Query: 615 SCHTSLEICSWTR-FQPGFLNRQIITLLSTLNV-SDEIFWTVQASMASK----LNLMLVA 668
+ E+ W+R P LN Q++ +L + +D I ++ M+S L +L +
Sbjct: 704 DTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIRQEMSSFYDEFLRTLLCS 763
Query: 669 SDVAFE--------VLTASCAEQ------------GNTAAIMLSAGFKPQTEPHL----Q 704
S V + S Q A ++L AGF P P+L +
Sbjct: 764 SGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAIMLLDAGFLPLKLPYLTKIFR 823
Query: 705 GMLTYELGELKECQCFIQVSESSLENC----------------FSKHGSRFAETKKLQVI 748
+L L LK+ + I VS+S+ C FS+ + + +L I
Sbjct: 824 RLLQDYLDNLKKLK--ITVSQSTFAYCVADPFGVLRPDEVHLGFSREWEHGSASTELHDI 881
Query: 749 NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
+ V++A+ P D++ +V + EL H+ D +VFP GD P + SG D DGD +
Sbjct: 882 D--VLLARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCW 939
Query: 809 VTWDENLIPPSKKS-CPPMECTPAEAKPL-TCHVNHQNLGQ----ICNAHVVHADRSEYG 862
V WD ++ K + P AE+ L +C +G + NA + S+ G
Sbjct: 940 VCWDPIIVREFKSTEFDPGTVPSAESLGLRSCSTLMSKIGSTEEFLTNAFRFNVKPSKLG 999
Query: 863 ---------AFDENCIL------LAKLAATAVDSPKTGKIVTMPS--HLKPK 897
+ EN I LA L + VDS K G +T + +LKPK
Sbjct: 1000 QCTIERETYCYHENNITSPMAVKLAWLLSYLVDSKKAGLELTDDAWEYLKPK 1051
>gi|345562071|gb|EGX45143.1| hypothetical protein AOL_s00173g244 [Arthrobotrys oligospora ATCC
24927]
Length = 1092
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 109/456 (23%), Positives = 180/456 (39%), Gaps = 88/456 (19%)
Query: 511 NIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQIL 570
+ AKY AR+ L FS T V + ++ E + + +DG G T + +A+ +
Sbjct: 368 STAKYNARIKLGFSRT-VLVPLENVQIKEEKDLVSTIKFPMTDGCGTATFAVLKAIAEKM 426
Query: 571 KLDGSPPPSAYQIRYAGYKGVVACWPAKDDG--IRMSLRGSMKKFKSCH-TSLEICSWTR 627
LD P S +QIR+ G KG++ D +R++ R + KF++ ++E+ + R
Sbjct: 427 GLDYVP--SYFQIRHGGRKGLILLDVENSDSESLRITYRKTQIKFETRQDLNIEVVDYAR 484
Query: 628 -FQPGFLNRQIITLLSTLNVSDEIFWTVQASMASK---LNLMLVASDVAF---------- 673
+ G + Q +T+L VS E + K L+ A D +F
Sbjct: 485 PLKRGKITSQFLTILHNGGVSKETLGNLAKEEIEKDGIWELLERAGDPSFVKNFYQSGAL 544
Query: 674 -------------EVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM-------------- 706
+ AS E+ M+ AGF L+ +
Sbjct: 545 KKRRDKDGCFKYAGSMPASAEER---IIQMVDAGFAVSECLVLKNLISGCNKNRLDSWND 601
Query: 707 LTYELGELKECQC---FIQV-SESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRP 762
L + + E +C F +V E + FS G F + K L+ ++G V++ ++P
Sbjct: 602 LKFTISESTSVKCAPDFKKVLREGEVFLQFSSDGFVFND-KLLKFLSGKVLVGRSPAYIA 660
Query: 763 GDVRILEAVDRPEL----HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
D++ AV PE+ L DC+VFP G+ + SG D DGD V WD+ ++ P
Sbjct: 661 SDIQSAIAVMNPEVLEAYGDLVDCIVFPIVGEYSLASRLSGGDYDGDSVLVIWDQRVVEP 720
Query: 819 SKKSCPPMECT--------PAEAKPLTCHVNHQNLGQ------ICNAHV----------- 853
PP + E + C++ + + I A +
Sbjct: 721 FSSRLPPKSTSVRKDLFKESTEQDTVGCYLKDNEMDEDATIKAILRAEIPKMLSDSNVGI 780
Query: 854 ---VHADRSEYGAFDEN-CILLAKLAATAVDSPKTG 885
+H S Y D I LA+LA +D+PK G
Sbjct: 781 CTLMHKKVSYYLGIDHPLSIRLAELACLLLDAPKQG 816
>gi|440464051|gb|ELQ33552.1| RNA-dependent RNA polymerase [Magnaporthe oryzae Y34]
gi|440477644|gb|ELQ58660.1| RNA-dependent RNA polymerase [Magnaporthe oryzae P131]
Length = 1738
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 135/602 (22%), Positives = 232/602 (38%), Gaps = 118/602 (19%)
Query: 519 MGLCFSSTHATVEIPPTEVDHELPDIKR-NGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
+G S TH TV P E+ E D+ G V +DGIG ++ +A EV QIL + P
Sbjct: 552 LGSGLSRTHPTVVFAPLEIHAEEHDLMSPAGNVMNDGIGLMSRSVAREVQQILGIQDLP- 610
Query: 578 PSAYQIRYAGYKGVVACWP-AKDDGIRMSLRGSMKKFK-----SCHTSLEICSWTR-FQP 630
A Q R KG+ P + D + S +K+ S H +LEI + + +
Sbjct: 611 -CAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQRKWNCTSADSHHRTLEIKTHAKPLRS 669
Query: 631 GFLNRQIITLLSTLN-----VSDEIFWTVQASMASKLNLMLVA----------------- 668
LN Q + +L + + D I ++ S+ ++L + VA
Sbjct: 670 ASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLRTELESVQVALRSPQQFLQWVHENSNH 729
Query: 669 ----SDVAFEV--LTASCAEQGNTAAIMLSAGFKPQTEPHLQ------------------ 704
+ +FEV L + A M+ AGF P+ + +LQ
Sbjct: 730 RQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCETLREKL 789
Query: 705 ----GMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCL 760
GM TY L + V E + CFS+ + + L + + V++A++P
Sbjct: 790 NIKVGMSTYAL---MVVDFWGVVPEGEVHLCFSEKFTCDGFSGTL-LNDQEVLVARSPAH 845
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
D++ ++AV RPEL L D +VF + G+ + SG D DGD+ +V WD ++ +
Sbjct: 846 YVSDIQKVKAVFRPELKDLKDVIVFSRNGNVALADRLSGGDYDGDIAWVCWDSKIVDNFQ 905
Query: 821 KSCPP----------MECTPAEAKPLTCHVN-----------------HQNLGQICNAHV 853
+ P + P L + QN IC
Sbjct: 906 NAAVPDSPDLFRQGYLSKIPGTMSDLVRELGLEKGTGEMIARGFEFNMRQNFLGICTNFK 965
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS----HLKPKKYPDFMEIEEYQ 909
D +LL+ L + VD K G + S ++ P F+E+ Y+
Sbjct: 966 ERLCYKRKNVNDSVAVLLSTLVSNLVDQGKQGIVFDAGSWRRLQMELHPGPGFLELPLYK 1025
Query: 910 --TYKSNKILGRLYRQIK------------GAYDENISVSSEVDINPVDIHYDTDL-EVP 954
+++ ++ + +K G + +++ S + H+D DL EV
Sbjct: 1026 ENSWRGTRLPEHIIDHLKFTVAKPLIDKELGDFSKSLQSKSGEKAH----HWDKDLVEV- 1080
Query: 955 GSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYS 1014
++ R+ K S + L+ L N ++ + + + R +GE + R+ Y
Sbjct: 1081 --CNYWDGMRSSK-SVEKLLDALKSDINAVAVLWKKVMAGARDGDRSRGEYRRRINEVYE 1137
Query: 1015 AF 1016
A+
Sbjct: 1138 AW 1139
>gi|397594531|gb|EJK56264.1| hypothetical protein THAOC_23889, partial [Thalassiosira oceanica]
Length = 225
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPA-----EAKPLT---------CHVNHQ 843
SGSDLDGDL+ VTWDE L ++S PM+ +P E P+ H +
Sbjct: 2 SGSDLDGDLFAVTWDERLF--LRQSLDPMDYSPPPTLGQETPPINDASLLAHFVGHAKND 59
Query: 844 NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY---P 900
NLG+I + HA GA C+ LAKLA+ AVD PK+G T+P LK K
Sbjct: 60 NLGRISMLWLDHAVTKGGGAGCHECVRLAKLASIAVDFPKSGIPATLPDDLKIKSTVPRA 119
Query: 901 DFMEIEEYQTYKSNKILGRLYRQIKGAYDENIS 933
+ E++ ++ N ILGRLY + A + +
Sbjct: 120 HWRELKNNTSFHCNSILGRLYDMVVSAMKDGTT 152
>gi|402579794|gb|EJW73745.1| hypothetical protein WUBG_15348 [Wuchereria bancrofti]
Length = 203
Score = 83.2 bits (204), Expect = 7e-13, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 691 LSAGFKPQTEPHL-QGMLTY--ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV 747
L A + Q PHL + M E G+L+ Q F+Q + + S+ ++ +
Sbjct: 90 LIAKIQIQIPPHLGRSMFGVMDETGQLQWGQIFVQCTRNIWLKTPSQSAAKI-------I 142
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASG 799
+ G V++ KNPC+ GDVR+ EAVD PELHHL D +VFPQ G RPH +E +G
Sbjct: 143 LKGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAG 194
>gi|119370384|gb|ABL68089.1| putative RNA-directed RNA polymerase 2 [Nicotiana attenuata]
Length = 108
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 9/111 (8%)
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKRNG----YVFSDGIGKITPDLAMEVAQILK 571
AARMG FS++ T+E+ V+ LPDI+ Y FSDGIGKI+ A +VAQ
Sbjct: 1 AARMGQLFSTSFQTMEVQSPHVEI-LPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCG 59
Query: 572 LDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEI 622
L S PSA+QIRY GYKGV+A ++ ++SLRGSM KF+S + L I
Sbjct: 60 L--SYTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRGSMLKFESKNRMLNI 106
>gi|402584478|gb|EJW78419.1| hypothetical protein WUBG_10674, partial [Wuchereria bancrofti]
Length = 355
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 154/354 (43%), Gaps = 83/354 (23%)
Query: 798 SGSDLDGDLYYVTWDENLIPP--------SKKSCPPM-----ECTPAEAKPLTCHVNHQN 844
+GSDLDGD Y V WD+ ++ SK PP E + +V +
Sbjct: 2 AGSDLDGDEYSVIWDDQMLFSYNEEPMDFSKLVRPPDILKEDEVVREMRRFYVEYVMQDS 61
Query: 845 LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK----IVT---------MP 891
+G I NA +V++D +G + C+ +A+ + +VD PKTG+ +V M
Sbjct: 62 IGIIANAFLVNSD--TFGIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSSRPDGKMI 119
Query: 892 SHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVS------SEVDINPVDI 945
+P+++PDFM +Y S +++G+L+R+I+ D+ ++++ SEV ++P+
Sbjct: 120 PPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LIDDVLTITSTHKAQSEVKVDPL-- 176
Query: 946 HYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNV---------------NRKEFRH 990
LE G + DA +Y + L+ Y + NR R
Sbjct: 177 -----LEYIGWESYENDAVLNLTAYSAHIRALMDNYGIEDEYQLYSGCFCKIRNRISDRD 231
Query: 991 IWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKN----------- 1039
M ++N+ ++ +L + + FR F F E D+ +N
Sbjct: 232 GDDMSQFNT--SFIIERKLTNIFMCFRCNFFAEFGDFMFCTEQDDDLRNKDVIERRYCKY 289
Query: 1040 --VLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIK 1091
V ++KASA+Y V Y + + E+G LLSF WIA D LA IK
Sbjct: 290 PTVEMKRKASAYYIVCYRKA-------MKEKGER----LLSFPWIAWDILADIK 332
>gi|296417840|ref|XP_002838558.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634502|emb|CAZ82749.1| unnamed protein product [Tuber melanosporum]
Length = 1700
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 163/395 (41%), Gaps = 81/395 (20%)
Query: 494 ETSVLDIKNWMGEFTAK---NIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN-GY 549
E SV D+ W + K+ +R+ L FS+ + + P++V+ + D+K G
Sbjct: 976 EMSVEDLLKWHIPLEGNEDVTVPKFWSRISLGFSTAVPSFKFEPSQVEI-VRDMKSTTGE 1034
Query: 550 VFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD---DGIRMSL 606
V +DG ++P + E+ +IL L +P +A Q R G KGV P+ D D I + +
Sbjct: 1035 VMNDGCSVVSPKVMQEIRRILDLHETP--TAVQARLGGAKGVWMIDPSIDWSSDEIFIKV 1092
Query: 607 RGSMKKFKSCHTSLEICSWTRF-----------QPGFLNRQIITLLSTLNVSDEIF---- 651
S K+ + W R +P +N Q+I +L V +
Sbjct: 1093 TDSQLKYSGYADDQD---WARMTLDILHISHEPRPATINIQLIPILENRGVPFQALKELT 1149
Query: 652 -----------------------WTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
W + + S +V + + + A
Sbjct: 1150 EEHLEEDLDELFQVIDKPVELRKWIYNRGSVGRARI----SFNGIQVTGSMPSTKHEMAI 1205
Query: 689 IMLSAGFKPQT----EPHLQGMLTYELGELKECQCFIQVSESSLENCFS------KHGS- 737
++L +GF ++ H++ M+ ELKE + I++ S+ C + + G
Sbjct: 1206 LLLESGFLVRSCRVLMDHVRVMIDQYCEELKE-KLHIRIPHSTTLLCVADPTGTLREGEV 1264
Query: 738 --RFAET-------KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC-----DCL 783
RF+ ++ QVI G +++A+NP P D++ ++AVD H L D +
Sbjct: 1265 SLRFSNGFLDPKTLRRTQVITGDILVARNPAHIPSDIQKVKAVDIQPYHSLALRELQDVI 1324
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
VF +GD+ + SG D DGD +V W+E L+ P
Sbjct: 1325 VFSTQGDQSLASLLSGGDYDGDKPWVCWEERLVKP 1359
>gi|105990550|gb|ABF81697.1| truncated MOP1 [Zea mays]
Length = 310
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 120/290 (41%), Gaps = 43/290 (14%)
Query: 244 DDDDPWIRTTDFSPSGAIGQCNSKQRVQEDCLSQPVTIREEP------DFEVPVED---- 293
D W+R DF+P+ + G+C++ S + P + + D
Sbjct: 31 DAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGELGELAIASMDVFGS 90
Query: 294 -----PFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKH 348
P V +E++F +N+++H G L ++ F +L + + +
Sbjct: 91 SSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSIDTLRRIFEK 150
Query: 349 IYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV 408
+ K ++ + ++ + K + + R+ ITP+K Y ++V
Sbjct: 151 MSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRESGKLMRCYRIHITPSKIYCLGPEEEV 210
Query: 409 -----------ADRFLRVTFMDEGLQTMNANVLS------YYVAPIVKDITSNSFSQKTG 451
A F RVTF+DE ++ N LS ++ P+ KTG
Sbjct: 211 SNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPL-----------KTG 259
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIK 501
++ R+ SIL +GF + ++Y FLAFS++QLR +S W F+ + +I+
Sbjct: 260 LYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIR 309
>gi|225445110|ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 130/527 (24%), Positives = 209/527 (39%), Gaps = 116/527 (22%)
Query: 503 WMGEFTAKNIAKYAARMGLCFSST------HATVEIPPTEVDHELPDIKRNGYV------ 550
+M ++AKY AR L S T +TV I +D E P +G+V
Sbjct: 303 FMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNI--QRIDDE-PGRDEDGHVVYDEDW 359
Query: 551 ----FSDGIGKITPDLAMEVAQIL-----------KLDGSPPPSAYQIRY----AGYKGV 591
+DG G I+ DLA+ L + S P Q R KG
Sbjct: 360 KPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDVCDSRYPLLIQCRLFNNGCAVKGT 419
Query: 592 VAC---WPAKDDGIRMSLRGSMKKFKSCHT----SLEICSWTRFQP--GFLNRQIITLLS 642
+ P + IR S+ K T S+EI + T QP +L++ +I LLS
Sbjct: 420 LLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEI-NGTSNQPRRSYLSKYLIALLS 478
Query: 643 TLNVSDEIFW-----------TVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIML 691
V +E F +VQ+S + L + L ++ ++T M+
Sbjct: 479 YGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTR-----------MI 527
Query: 692 SAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSR--FAETKKLQV-- 747
+G P EP L L++ + E ++ ++V + + +CF G+ K +V
Sbjct: 528 LSGI-PIDEPFLHHCLSFMVNEERKG---LRVGKLPVNDCFYLMGTADPTGTLKSDEVCI 583
Query: 748 ------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEA 797
+ G V++ K+P L GD+ +L A L + FP KG R +E
Sbjct: 584 ILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEM 643
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCP--------------PMECTPAEAKP------LT 837
+ SD DGD+Y+V+ ++ L+ + S P P + +P E + LT
Sbjct: 644 ANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLT 703
Query: 838 CHVNHQN-LGQICNAHVVHADR---------SEYGAFDENCILLAKLAATAVDSPKTGKI 887
+ +G + +V DR E + L + A+D+PK+G
Sbjct: 704 TRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMK 763
Query: 888 VTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISV 934
V + LK +K+P FM E +Y S ILG++Y ++ EN S
Sbjct: 764 VNVSKELKAEKFPHFMGRE--SSYHSTSILGQIYDAVESFQPENQST 808
>gi|156390354|ref|XP_001635236.1| predicted protein [Nematostella vectensis]
gi|156222327|gb|EDO43173.1| predicted protein [Nematostella vectensis]
Length = 127
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 752 VVIAKNPCLRPGDVRILEAV-DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVT 810
V++ +NPC PGD+R+L+ V + P+ +L DC+VFP KG RPH +E+SG DLDGD ++V+
Sbjct: 66 VMVVRNPCYYPGDIRVLKLVKNLPQYAYLNDCIVFPTKGSRPHADESSGGDLDGDEFFVS 125
Query: 811 WD 812
WD
Sbjct: 126 WD 127
>gi|402577566|gb|EJW71522.1| hypothetical protein WUBG_17571 [Wuchereria bancrofti]
Length = 89
Score = 80.5 bits (197), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 710 ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILE 769
E G L+ Q F+Q + K ++ ++ GFV+I KNP + GDVRI E
Sbjct: 7 ETGLLQYGQVFVQFTNDVFLKTPPKAAAK-------TIVKGFVLITKNPSIVAGDVRIFE 59
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASG 799
AVD PEL HL D +VFPQ G RPHT+E +G
Sbjct: 60 AVDLPELRHLVDVVVFPQHGPRPHTDEMAG 89
>gi|356497593|ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 953
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 130/522 (24%), Positives = 213/522 (40%), Gaps = 121/522 (23%)
Query: 511 NIAKYAARMGLCFSST--------HATVEIPPTE----------VDHELPDIKRNGYVFS 552
N+ KY AR L S T +V+ P E VD+E P I +
Sbjct: 301 NLNKYMARFSLILSKTLKLNIDLTTVSVQKIPDEYCKDANGNIMVDNEKPRI------LT 354
Query: 553 DGIGKITPDLAM------------------EVAQILKLDG-------------SPPPSAY 581
DG G I+ DLA+ E+ +++L+ PP
Sbjct: 355 DGTGFISRDLALLCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTHEPPLLI 414
Query: 582 QIR--YAGY--KGVVAC---WPAKDDGIRMSLRGSMKKFKSCH----TSLEICSWT-RFQ 629
Q R + G+ KG + P + +R S+ ++K S H SLE+ + + + +
Sbjct: 415 QCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMI-KVEKDPSVHMQSINSLEVVTTSNKPK 473
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN-TAA 688
G+L++ +I LLS V +E F + S N + A + +C E+ AA
Sbjct: 474 RGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRA-SINCGEKDEYNAA 532
Query: 689 IMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGS--RFAETKKLQ 746
M+ G P EP L+ L+ E K+ ++ + + +CF G+ KK Q
Sbjct: 533 EMILCGI-PLDEPFLKHHLSRFAREEKKK---LRGGKLYMPDCFYLMGTVDPTGHLKKNQ 588
Query: 747 V--------INGFVVIAKNPCLRPGDVRILEAVDRPELH----HLCDCLVFPQKGDRPHT 794
V I G V++ +NP L GD+ ++A EL H + FP+ G R
Sbjct: 589 VCIIHENSQIVGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVA 648
Query: 795 NEASGSDLDGDLYYVT--------------WDENLIP-------PSKKSCPPMECTPAEA 833
+E +G D DGD Y+V+ W EN +P PS+ S +E
Sbjct: 649 DEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIENSVPLDSSVKKPSEFSPEELEEELFRL 708
Query: 834 KPLTCHVNHQNLGQICNAHVVHADR----------SEYGAFDENCILLAKLAATAVDSPK 883
T +G N+ + DR +E EN + L + A+D+PK
Sbjct: 709 FLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDAPK 768
Query: 884 TGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIK 925
+G+ V +P+ L + +P +ME + +++ S ILG +Y +++
Sbjct: 769 SGRKVQVPNDLIAELFPHYMEKD--KSFTSTSILGLIYDEVE 808
>gi|122920829|pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920830|pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920831|pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 150/365 (41%), Gaps = 71/365 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI---KRNGYVFSDGIGKITPDLAMEVAQIL 570
K +R+ L S T+A + + P ++ H D+ G V +DG+G+++ +A + +L
Sbjct: 287 KLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVL 346
Query: 571 KLDGSPPPSAYQIRYAGYKGV-------------VACWPAK--------DDGIR-MSLRG 608
L P SA Q R+ KG+ + +P++ D R + +R
Sbjct: 347 GLGDVP--SAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRS 404
Query: 609 SMKKFKSCHTSLEIC--------SWTRFQPGF-------LNRQIITLLSTLNVSDEIFWT 653
+ KS +L++ + + L RQ LN E
Sbjct: 405 VASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQW 464
Query: 654 VQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE 713
V S +S+ + S L Q T ++++GF P+ + +LQ + ++L +
Sbjct: 465 VYESYSSRATRV---SHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQD-IAWDLQK 520
Query: 714 LK----ECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF------------------ 751
K + + I+V S+ + E +V GF
Sbjct: 521 RKCDTLKSKLNIRVGRSAYIYMIADFWGVLEEN---EVHVGFSSKFRDEEESFTLLSDCD 577
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++A++P P D++ + AV +PELH L D ++F KGD P + SG D DGD+ +V W
Sbjct: 578 VLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCW 637
Query: 812 DENLI 816
D ++
Sbjct: 638 DPEIV 642
>gi|451994085|gb|EMD86556.1| hypothetical protein COCHEDRAFT_1034368 [Cochliobolus
heterostrophus C5]
Length = 158
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKK 898
++ + LG I +AH+ AD +E G D C+ LA+L + AVD PK+G M L+PKK
Sbjct: 8 YIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPKSGIPAEMKRELRPKK 67
Query: 899 YPDFME---IEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPG 955
+P FME + ++Q YKS KILG LY ++K D ++ D ++ +D D E+
Sbjct: 68 WPHFMEKKYLSQHQIYKSKKILGLLYDEVK-LIDFEPQWENQFDKRILEA-FDLDQEL-- 123
Query: 956 SVDFTADARNQKCSYDGQLNGLLGQYNV 983
A + K SYD L L+ ++ +
Sbjct: 124 ----LDKAASLKLSYDEALRPLMAKHGI 147
>gi|170579664|ref|XP_001894930.1| RNA-directed RNA polymerase 1 [Brugia malayi]
gi|158598304|gb|EDP36223.1| RNA-directed RNA polymerase 1, putative [Brugia malayi]
Length = 312
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 26/257 (10%)
Query: 349 IYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV 408
+++ + + ++ E KD+ E + + K EG + VR+++ITPT+ + +
Sbjct: 44 LFTLFQKIRNSLEGQKDILEEIYHDNK-REGYQ------RVRKVIITPTRIILVVPELLM 96
Query: 409 ADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCG 468
+R LR TF +G + P+ + T F +T F + LS G +
Sbjct: 97 GNRVLR-TFDKDGNGALRIQFRDDDGTPLRVN-TVGLFLIQTTTF----NTLSRGIYIGD 150
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHA 528
R + +L S++Q+RD+ +F+ I+ +G+F + NI K +RMG CF+
Sbjct: 151 RHFVYLGSSNSQMRDNGCYFYDDGKGGQAHKIREQLGKFDSCNIPKMMSRMGQCFTQAKR 210
Query: 529 TVEIPPTEVDHELPDI------KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQ 582
I + ++ DI + Y+FSDG+GK++ + A ++A + L S
Sbjct: 211 CKVILKRQKYNKTYDIIGGRDTNQASYIFSDGVGKVSKEFAEKIAFDIGLGTS------- 263
Query: 583 IRYAGYKGVVACWPAKD 599
IR+ G KGV++ P+ D
Sbjct: 264 IRHRGIKGVLSIDPSLD 280
>gi|85091735|ref|XP_959047.1| hypothetical protein NCU07534 [Neurospora crassa OR74A]
gi|4803727|emb|CAB42634.1| RNA-dependent RNA polymerase [Neurospora crassa]
gi|28920444|gb|EAA29811.1| predicted protein [Neurospora crassa OR74A]
Length = 1402
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 150/365 (41%), Gaps = 71/365 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI---KRNGYVFSDGIGKITPDLAMEVAQIL 570
K +R+ L S T+A + + P ++ H D+ G V +DG+G+++ +A + +L
Sbjct: 667 KLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVL 726
Query: 571 KLDGSPPPSAYQIRYAGYKGV-------------VACWPAK--------DDGIR-MSLRG 608
L P SA Q R+ KG+ + +P++ D R + +R
Sbjct: 727 GLGDVP--SAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRS 784
Query: 609 SMKKFKSCHTSLEIC--------SWTRFQPGF-------LNRQIITLLSTLNVSDEIFWT 653
+ KS +L++ + + L RQ LN E
Sbjct: 785 VASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQW 844
Query: 654 VQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE 713
V S +S+ + S L Q T ++++GF P+ + +LQ + ++L +
Sbjct: 845 VYESYSSRATRV---SHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQD-IAWDLQK 900
Query: 714 LK----ECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF------------------ 751
K + + I+V S+ + E +V GF
Sbjct: 901 RKCDTLKSKLNIRVGRSAYIYMIADFWGVLEEN---EVHVGFSSKFRDEEESFTLLSDCD 957
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++A++P P D++ + AV +PELH L D ++F KGD P + SG D DGD+ +V W
Sbjct: 958 VLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCW 1017
Query: 812 DENLI 816
D ++
Sbjct: 1018 DPEIV 1022
>gi|336470141|gb|EGO58303.1| hypothetical protein NEUTE1DRAFT_82729 [Neurospora tetrasperma FGSC
2508]
gi|350290166|gb|EGZ71380.1| RNA-dependent RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 1402
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 150/365 (41%), Gaps = 71/365 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI---KRNGYVFSDGIGKITPDLAMEVAQIL 570
K +R+ L S T+A + + P ++ H D+ G V +DG+G+++ +A + +L
Sbjct: 667 KLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVL 726
Query: 571 KLDGSPPPSAYQIRYAGYKGV-------------VACWPAK--------DDGIR-MSLRG 608
L P SA Q R+ KG+ + +P++ D R + +R
Sbjct: 727 GLGDVP--SAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRS 784
Query: 609 SMKKFKSCHTSLEIC--------SWTRFQPGF-------LNRQIITLLSTLNVSDEIFWT 653
+ KS +L++ + + L RQ LN E
Sbjct: 785 VASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQW 844
Query: 654 VQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE 713
V S +S+ + S L Q T ++++GF P+ + +LQ + ++L +
Sbjct: 845 VYESYSSRATRV---SHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQD-IAWDLQK 900
Query: 714 LK----ECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF------------------ 751
K + + I+V S+ + E +V GF
Sbjct: 901 RKCDTLKSKLNIRVGRSAYIYMIADFWGVLEEN---EVHVGFSSKFRDEEESFTLLSDCD 957
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++A++P P D++ + AV +PELH L D ++F KGD P + SG D DGD+ +V W
Sbjct: 958 VLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCW 1017
Query: 812 DENLI 816
D ++
Sbjct: 1018 DPAIV 1022
>gi|222617921|gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 120/510 (23%), Positives = 202/510 (39%), Gaps = 108/510 (21%)
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEV-----------DHELPDIKRNG--YVFSDG 554
T +AKY R L S T T+++ +EV D ++ R+G + +DG
Sbjct: 492 TVLTLAKYMLRFALIVSKT-ITLDVDLSEVLVKLIDDEPCLDEHGKEVFRDGERLIHTDG 550
Query: 555 IGKITPDLAME----------------------------VAQILKLDGSPPPSAYQIRYA 586
G I+ DLA + V + +D PP IR +
Sbjct: 551 TGLISEDLAQKCTYSNSKGKLLEPQPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPS 610
Query: 587 GYKGVVACWPAKDDGIR-------MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQ 636
K + +P + G++ +S R + K + S EI S + R F +
Sbjct: 611 MLK--IKTYP-ELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNN 667
Query: 637 IITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFK 696
+I LL V +E F + + + + A + + + A M+ +G
Sbjct: 668 LIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILSGI- 726
Query: 697 PQTEPHLQGMLTY-ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV-------- 747
P E +LQ L + L E K I+ + +++C+ G+ T KL
Sbjct: 727 PLEESYLQSRLDFLSLLERKG----IKNGKIPIDDCYYLMGTA-DPTGKLGPNEVCVILD 781
Query: 748 ---INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEASGS 800
++G V++ K P L PGD+ +L+A ++ + ++FP G R +E + S
Sbjct: 782 YGQVSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANS 841
Query: 801 DLDGDLYYVTWDENLI---PPSKKSCP-----------PMECTPAEAKPLTCH------- 839
D DGD+Y+V+ + L+ PSK P P + +E + + H
Sbjct: 842 DFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRF 901
Query: 840 -VNHQNLGQICNAHV-------VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
++ N V V D SE ++ + L L A+D+PK G V +P
Sbjct: 902 APSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIP 961
Query: 892 SHLKPKKYPDFMEIEEYQTYKSNKILGRLY 921
L K+YP FM + +Y S+ ILG++Y
Sbjct: 962 RDLMVKQYPHFM--DRSPSYHSSSILGKIY 989
>gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 142/598 (23%), Positives = 218/598 (36%), Gaps = 133/598 (22%)
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
NVL+ A + K ++ S + K I +G + RRY F F +
Sbjct: 213 NVLTVKFADVQKSSSTYSIDH----YFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKD 268
Query: 488 --------FFSKVGETSVLDIKN---------------WMGEFTAKNIAKYAARMGLCFS 524
+F + T+ D++N +M A +A Y AR L S
Sbjct: 269 LSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILS 328
Query: 525 STHATVEIPPTEV-----------DHELPDI---KRNGYVFSDGIGKITPDLA-MEVAQI 569
T T+E+ T + D + D+ + + SDG G I+ DLA M I
Sbjct: 329 KT-KTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNI 387
Query: 570 LK----LDGSPPPSAYQIR--YAGYKGVVACWPAKDDGIR-MSLRGSMKKFKSCHTSLEI 622
K S P Q R Y GY K R + +R SM K
Sbjct: 388 FKGKCLRSESIQPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSK------- 440
Query: 623 CSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAE 682
P N L + +IF A+ LN +
Sbjct: 441 ------DPSLSNFSTFNALEVVTTRSQIFG------AAALNY-------------GEMDD 475
Query: 683 QGNTAAIMLSAGFKPQTEPHLQG----MLTYELGELKECQCFIQVSESSLENCFSKHGSR 738
Q AA M+ G P EPHL+ +L E +LK + + V+ES
Sbjct: 476 Q--NAAQMILVGI-PLDEPHLKNYLSILLKTEKNDLKAGK--LPVTESYYLMGTVDPTGA 530
Query: 739 FAETKKLQV-----INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKG 789
E + + I+G V++ +NP L GD+ IL+A L + FPQKG
Sbjct: 531 LKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKG 590
Query: 790 DRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT----------PAEAKPLTCH 839
R +E +G D DGD+Y+++ + L+ K S P + T P++ P
Sbjct: 591 PRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELE 650
Query: 840 VNHQNLGQICNAH--------------------VVHADRSEYGA-FDENCILLAKLAATA 878
+ H ++ DR+E A + + L + A
Sbjct: 651 EELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDA 710
Query: 879 VDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSS 936
+D+PK G V +P+ LKP +P +ME + + ++S ILG ++ +K E S SS
Sbjct: 711 LDAPKKGDKVYLPNKLKPDIFPHYMERD--KKFQSTSILGLIFDFVKSQTTEEPSPSS 766
>gi|340959153|gb|EGS20334.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1441
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 152/363 (41%), Gaps = 65/363 (17%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN-GYVFSDGIGKITPDLAMEVAQILKL 572
K +R+ L S T + P ++ H DI G V +DGIG+++ +A ++ L L
Sbjct: 668 KLFSRIQLGLSKTIPALTFEPHQIIHREKDILSPIGKVMNDGIGRMSRSVARKIRDALGL 727
Query: 573 DGSPPPSAYQIRYAGYKGVVACWPA-KDDGIRMSLRGSMKKFK-----SCHTSLEICSW- 625
+ PSA Q R KG+ A D + S +K+ H +LE+ S
Sbjct: 728 --TDIPSAIQGRMGSAKGMWLMDVADTSDEDWIETYPSQRKWHCNWNDPAHRTLEVRSVP 785
Query: 626 TRFQPGFLNRQIITLL------------------------------STLNVSDEIFWTVQ 655
T +P LN Q + +L S LN + V
Sbjct: 786 TELKPAGLNLQFLPILEAQAKDKAQMRYAIGERLKKDLETQFELQKSALNHPLKFRQWVN 845
Query: 656 ASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGM---LTYELG 712
+S+ + + L S E T +L++GF P+ + +LQ + L Y+
Sbjct: 846 EDWSSRSERVRNGQVLFLGGLPESKHE---TLFFLLNSGFDPKKQKYLQKLAWELQYQRC 902
Query: 713 ELKECQCFIQVSESS-----------LENCFSKHG--SRFAETKKLQ------VINGFVV 753
EL + + I+V S+ LE G SRF L + + V+
Sbjct: 903 ELLKTKLNIKVGRSAYVYMVVDFWGMLEENEVHLGFSSRFCANTDLDQESFTLLADCDVL 962
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
+A++P DV+ + AV +PELH L D +VFP KG+ ++ SG D DGD+ +V WD
Sbjct: 963 VARSPAHFVSDVQKVRAVFKPELHALKDVIVFPLKGNVALADKLSGGDYDGDMAWVCWDP 1022
Query: 814 NLI 816
+++
Sbjct: 1023 DIV 1025
>gi|310799490|gb|EFQ34383.1| RNA-directed RNA polymerase [Glomerella graminicola M1.001]
Length = 1348
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 178/393 (45%), Gaps = 69/393 (17%)
Query: 496 SVLDIKNWMGEFTAKNIAKYA---ARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVF 551
S+ + +W+ +F Y +R+ L S T + + ++ + D+ G V
Sbjct: 600 SIYRMLDWLLQFDRNQEQPYLKLFSRIQLGLSKTTPIIVLGRDQIRIQDQDMCSPIGKVM 659
Query: 552 SDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDG-IRMSLRGSM 610
+DGIG+++ LA + +L L S PSA Q R KG+ A D G + + L S
Sbjct: 660 NDGIGRMSRSLARKTRDVLGL--SDIPSAIQGRIGPAKGMWLIDIADDKGDLWLELWPSQ 717
Query: 611 KKFKSC------HTSLEICSWTRFQPGF--LNRQIITLLSTLNVSDEIFWTV-QASMASK 661
+K+ +C H +LE+ + + PG LN Q + +L ++ E V S+ +
Sbjct: 718 RKW-NCDFGDPEHRTLEVRAHAK-DPGSACLNIQFLPVLEDRAINKEAMREVIGKSLVDE 775
Query: 662 LNLMLVASDVAFEV---------LTASCAEQ----GNTAAI-------------MLSAGF 695
LN L A + T+S Q G+ + ++ AGF
Sbjct: 776 LNRQLEEQKDAMKYPLQFRQWISQTSSTRTQRLAHGHVPYMGGLPESNEEIMNSLIDAGF 835
Query: 696 KPQTEPHLQGM---LTYELGELKECQCFIQVSESS-----------LEN-----CFSKHG 736
P+ + +LQ + L Y L E + + I+VS S+ LE CFS
Sbjct: 836 DPRRQRYLQELAWNLRYSLCESLKKKMSIKVSNSAYLFMVVDFWNVLEEGEVHLCFS--- 892
Query: 737 SRF-AETKKLQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT 794
S+F +T +++G V++A++P D++ ++AV +PELH + D +VF KG+ P
Sbjct: 893 SKFQTDTFSDSILHGCDVLVARSPAHFVSDIQRVKAVFKPELHTIKDVIVFSAKGNVPLA 952
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSKKS-CPPM 826
++ SG D DGD +V W+ ++ K + PP+
Sbjct: 953 DKLSGGDYDGDKAWVCWEPAIVSNFKNADVPPI 985
>gi|218187687|gb|EEC70114.1| hypothetical protein OsI_00773 [Oryza sativa Indica Group]
Length = 1172
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 120/510 (23%), Positives = 202/510 (39%), Gaps = 108/510 (21%)
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEV-----------DHELPDIKRNG--YVFSDG 554
T +AKY R L S T T+++ +EV D ++ R+G + +DG
Sbjct: 503 TVLTLAKYMLRFALIVSKT-ITLDVDLSEVLVKLIDDEPCLDEHGKEVFRDGERLIHTDG 561
Query: 555 IGKITPDLAME----------------------------VAQILKLDGSPPPSAYQIRYA 586
G I+ DLA + V + +D PP IR +
Sbjct: 562 TGLISEDLAQKCTYSNSKGKLLEPQPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPS 621
Query: 587 GYKGVVACWPAKDDGIR-------MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQ 636
K + +P + G++ +S R + K + S EI S + R F +
Sbjct: 622 MLK--IKTYP-ELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNN 678
Query: 637 IITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFK 696
+I LL V +E F + + + + A + + + A M+ +G
Sbjct: 679 LIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILSGI- 737
Query: 697 PQTEPHLQGMLTY-ELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQV-------- 747
P E +LQ L + L E K I+ + +++C+ G+ T KL
Sbjct: 738 PLEESYLQSRLDFLSLLERKG----IKNGKIPIDDCYYLMGTA-DPTGKLGPNEVCVILD 792
Query: 748 ---INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEASGS 800
++G V++ K P L PGD+ +L+A ++ + ++FP G R +E + S
Sbjct: 793 YGQVSGDVLVYKYPGLHPGDIHVLKATYSSDIGKVVGNSKHAILFPTTGQRSLADEMANS 852
Query: 801 DLDGDLYYVTWDENLI---PPSKKSCP-----------PMECTPAEAKPLTCH------- 839
D DGD+Y+V+ + L+ PSK P P + +E + + H
Sbjct: 853 DFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRF 912
Query: 840 -VNHQNLGQICNAHV-------VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
++ N V V D SE ++ + L L A+D+PK G V +P
Sbjct: 913 APSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIP 972
Query: 892 SHLKPKKYPDFMEIEEYQTYKSNKILGRLY 921
L K+YP FM + +Y S+ ILG++Y
Sbjct: 973 RDLMVKQYPHFM--DRSPSYHSSSILGKIY 1000
>gi|380489167|emb|CCF36884.1| RNA-directed RNA polymerase [Colletotrichum higginsianum]
Length = 1354
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 190/431 (44%), Gaps = 84/431 (19%)
Query: 452 VFK-RVKSILSDG--FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
VF+ RV DG F+ R + L SS+ LR+ + V ++ +W+ +F
Sbjct: 558 VFRERVSLFAEDGNSFHPTSPRGTLL--SSDNLRELRV-------KCRVSEMLDWLLQFD 608
Query: 509 AKNIAKYA---ARMGLCFSSTHATVEIPPTEVDHELPDIKRN-GYVFSDGIGKITPDLAM 564
Y +R+ L S T + + +++ + D++ V +DGIG+++ LA
Sbjct: 609 QNQKQPYLKLFSRIQLGLSKTMPVIVLELSQIRNRGKDLRSPIDMVMNDGIGRMSRSLAR 668
Query: 565 EVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDG-IRMSLRGSMKKFKSC-----HT 618
+V +L L S PSA Q R+ KG+ +++DG + + S +K+ S H
Sbjct: 669 KVRDVLGL--SDVPSAIQGRFGPAKGMWLTDISEEDGKLWLETWPSQRKWDSDFKDPEHR 726
Query: 619 SLEICSWTR-FQPGFLNRQIITLLSTLNVSDEIFW-TVQASMASKLNLMLVASDVA--FE 674
+LE+ S + LN Q + ++ + ++ T+ ++ +LN + A +
Sbjct: 727 TLEVRSHAMDTKSASLNLQFLPVMEDRAIDKDLMRETIGKNLVDELNREIEEQKNAMKYS 786
Query: 675 VLTASCAEQGNTAA------------------------IMLSAGFKPQTEPHLQGMLTYE 710
+L +G + ++ GF+PQ++ +LQ +
Sbjct: 787 LLFRQYVNKGASTRKQRLTNGRIPFLGGLPDSSEERMNFLIDGGFEPQSQKYLQDLS--- 843
Query: 711 LGELKECQC-------FIQVSESS-----------LEN-----CFSKHGSRF-AETKKLQ 746
L+ C I+V ES+ LE CFS S+F +T
Sbjct: 844 -WSLRRAHCDKLLKKMSIKVPESAYLFMVIDFWNVLEEGEVHLCFS---SKFQTDTFSDS 899
Query: 747 VINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
+++G V++A++P DV+ ++AV +PELH + D +VF KG+ P ++ SG D DGD
Sbjct: 900 MLHGCDVLVARSPAHFVSDVQRVKAVFKPELHAIKDVIVFSAKGNVPLADKLSGGDYDGD 959
Query: 806 LYYVTWDENLI 816
+V WD ++
Sbjct: 960 KAWVCWDPAIV 970
>gi|429856861|gb|ELA31752.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1365
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 160/388 (41%), Gaps = 82/388 (21%)
Query: 497 VLDIKNWMGEFTAKNIAKYA---ARMGLCFSSTHATVEIPPTEVDHELPD-IKRNGYVFS 552
V D+ +W+ + Y AR+ L S T V + ++ H+ D + G V +
Sbjct: 620 VRDMLDWLLQLDCNEHQPYLKLFARIQLGLSKTTPVVVLNRNQIRHQEKDMLSPIGKVMN 679
Query: 553 DGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV-------------VACWPAKD 599
DGIG+++P LA ++ +L L P SA Q R+ KG+ + WP++
Sbjct: 680 DGIGRMSPKLAQKIKNVLGLQDIP--SAIQGRFGPAKGMWLIDIQDTGDDLWIETWPSQR 737
Query: 600 DGIRMSLRGSMKKFKSCHTSLEICSWT----------RFQPGFLNRQIITLLSTLNVSDE 649
+ + H +LEI S +F P +R + + D
Sbjct: 738 -------KWNCDYLDPEHRTLEIKSHAAEPRSASLNIQFLPVLEDRAVDKPGMRKAIGDS 790
Query: 650 IFWTVQASMASKLNLM--------------------LVASDVAFEVLTASCAEQGNTAAI 689
+ + + + N M L+ + V F E+ T
Sbjct: 791 LVDELNRELEGQKNAMKYPVQFRQWVNENSIGRKQRLIHNSVPFLAGLPDSNEE--TMNF 848
Query: 690 MLSAGFKPQTEPHLQGM---LTYELGELKECQCFIQVSESSL------------EN---- 730
++ GF+P + +Q + L + E + + I++ S+ EN
Sbjct: 849 LIDGGFEPSKQKFIQDIAWNLRRQKCENLKKKMSIKIPNSAYFYMVIDFWGVLEENEVHL 908
Query: 731 CFSKHGSRF-AETKKLQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
CFS S+F E+ +++G V++A++P DV+ ++AV +PELH L D +VF K
Sbjct: 909 CFS---SKFQTESFSDSMLHGCDVLVARSPAHFVSDVQRVKAVFKPELHALKDVIVFSAK 965
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLI 816
GD P ++ SG D DGD +V W+ ++
Sbjct: 966 GDIPLADKLSGGDYDGDKAWVCWEPAIV 993
>gi|347839298|emb|CCD53870.1| RNA Polymerase RNA dependante [Botryotinia fuckeliana]
Length = 1007
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 159/369 (43%), Gaps = 69/369 (18%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEV----DHELPDIK--RNGYVFSDGIGKITPDLAMEVA 567
K AR L S ATV + T++ D PD+ YV +DG G+++ LA ++
Sbjct: 622 KLFARTALVVSRNRATVTVEETQIRRKEDIRNPDVNDPSKTYVMTDGAGRMSLALARKI- 680
Query: 568 QILKLDGSPPPSAYQIRYAGYKGVVACWPAKD---DGIRM---------SLRGSMKKFKS 615
+LKL+ + PSA+Q R+ KG+ +D D I + +GS
Sbjct: 681 -VLKLELAYIPSAFQGRFGQAKGLWIVDRTQDIENDWIELYGEQCKWKRGKKGSHDYGHP 739
Query: 616 CHTSLEICSWTR-FQPGFLNRQIITLL-----STLNVSDEIFWTVQASMASKLNLMLVAS 669
H + E+ + + LN Q++ +L + + + I ++ + L + A
Sbjct: 740 SHRTFEVVGHSAPLKTADLNTQLLPILMHQATNPKTMENAIVGALKEGLKQSLEELRSAL 799
Query: 670 DVAFEV-----LTASC-----------------AEQGNTAAIMLSAGFKPQTEPHLQGML 707
+ E+ LT S + + ++L AGF P+ ++ ++
Sbjct: 800 NSPQELRCWNRLTNSSLQDRVKNGTLQWLGGLPTKNEDKLNLLLDAGFDPRRLQYVMDLV 859
Query: 708 TYEL----GELKECQCFIQVSESS-----------LE-NCFSKHGSRFAETKK----LQV 747
ELKE + I V++S+ LE N S F + + +Q+
Sbjct: 860 KKSFDMKCAELKE-RLNITVAKSTKVYMVPDFWGVLEPNEVHLDFSSFVDNETGLSDIQL 918
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
+ V++A+NP P D++ + AV++ EL HL D +VF KG ++ SG D DGD+
Sbjct: 919 EDMDVLVARNPAHYPSDIQRVTAVNKHELRHLKDVIVFSTKGYPALADKLSGGDYDGDIA 978
Query: 808 YVTWDENLI 816
+V WD ++
Sbjct: 979 WVCWDRAIV 987
>gi|302782930|ref|XP_002973238.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
gi|300158991|gb|EFJ25612.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
Length = 878
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 124/485 (25%), Positives = 191/485 (39%), Gaps = 92/485 (18%)
Query: 515 YAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKL 572
Y R+ L S T P E+ + NG + +DG G I+ DLA +VA +
Sbjct: 242 YNKRLQLALSKTWTANHDPGGEIA-----VGCNGKPLIHTDGTGFISEDLAKQVA----V 292
Query: 573 DGSPP-PSAYQIR--YAGY--KGVVACWPAKDDGIRMSLRGSMKKFKS--------CHTS 619
+ S P+ Q+R Y G KG + + R SM K K+ S
Sbjct: 293 NTSEEYPALLQVRLFYHGIAVKGTLLTLKTLQHKT-IVYRDSMLKVKADPKLANCPSFNS 351
Query: 620 LEICSWTRFQP-GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA 678
LEIC+ + P L+R +I LL V + F +Q + M D+A
Sbjct: 352 LEICTTSHKPPVASLSRYVIALLLEGGVPESFF--IQVVQEAIAKAMTPLQDIAAAHRLC 409
Query: 679 SCAEQGNTAAIMLSAGFKPQTEPHLQG-MLTYELGELKECQCFIQVSESSLENCFSKHGS 737
S G+ M+ AG P T+ L+ ++T +LK + LE + GS
Sbjct: 410 SRFSFGDMPRRMILAGI-PLTDHFLRNSLMTMIRTQLKR----YAKANVPLEGSYYLMGS 464
Query: 738 -----RFAETK-KLQVING-----FVVIAKNPCLRPGDVRILEAVDRPELHHLCD----C 782
A + + + NG V++ K+P + PGDV + EA EL
Sbjct: 465 ADPTNTLARNQVAILLENGPLHRHKVLVYKHPGMHPGDVHVFEATWNQELESCLGNSKYV 524
Query: 783 LVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME-----------CTPA 831
++FP KG R +E + SDLDGDLY++ +E + K P E C
Sbjct: 525 IIFPTKGPRSVVHEIANSDLDGDLYWICTNEQVSNLYKPQLPWQEKRTNGTTAVPSCLGM 584
Query: 832 EAKPLTCHVNHQNLGQICNAH----------VVHADRSEYGAFD--------ENCIL-LA 872
+ + + L I + ++H D+ +FD +NC+L LA
Sbjct: 585 SPEVIMSRLVAMFLRAIFKPNFAISRAATNWLIHMDKYLSTSFDNVREREFRQNCLLELA 644
Query: 873 KLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY-------------QTYKSNKILGR 919
L A+D+ KTG++VT+ L K +EE Y+S I G+
Sbjct: 645 DLYYLALDADKTGEMVTIEDRLLCDKIKPHFLVEENSNNPNRRKIQQQDNVYRSTSIFGK 704
Query: 920 LYRQI 924
+Y +
Sbjct: 705 IYNLV 709
>gi|350635543|gb|EHA23904.1| hypothetical protein ASPNIDRAFT_40039 [Aspergillus niger ATCC 1015]
Length = 1307
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 157/395 (39%), Gaps = 81/395 (20%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R L S T+ATV + P +V LPD+ + V +DG ++ LA ++ L L
Sbjct: 594 KLFQRFSLALSKTYATVVLQPRQV-LPLPDVSKP--VMNDGCALMSRGLANKICDSLGLT 650
Query: 574 GSPPPSAYQIRYAGYKGVVACW---------PAKDDGIRMSLRGSMKKFKS--CH----- 617
G P SA+Q R AG KG+ W A D+ + + + S K K C
Sbjct: 651 GYTP-SAFQGRIAGAKGL---WMVDKHQSHVSADDNDVWIQISDSQLKIKPHPCQWDESV 706
Query: 618 ----TSLEICSWTR-FQPGFLNRQIITLLS-----TLNVSDEIFWTVQASMASKLNLMLV 667
+ E+ W++ P LN Q++++L +++D +Q+ N++
Sbjct: 707 DDEKLTFEVVKWSKPLHPVNLNIQLLSILDHGGHIKEHLADLTRLGIQSVYQEFANVLQS 766
Query: 668 ASDVAFEVLTASCAEQGNTA----------------------AIMLSAGFKPQTEPHLQG 705
S V L G+ + AGF P++ L+
Sbjct: 767 DSAVLCRSLVQKIRPSGDDGFGPVSQRTWRFENWMSSDAEFIIRLTEAGFCPRSFYFLRK 826
Query: 706 MLTYELGELKEC---QCFIQVSESSLENCFSKHGSRFAETKKLQVINGF----------- 751
L L EL + + I+V S+ C + + K+ +V GF
Sbjct: 827 RLGKCLRELLKRHVDELRIEVPLSTYAFCIA---DPYGVLKEDEVHFGFSNNWRDGKGQF 883
Query: 752 ---------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDL 802
V++ + P P D++ +AV + EL H D +VFP G P + SG D
Sbjct: 884 EDILLDGIDVLVGRLPAHLPSDIQRRKAVWKSELRHFKDVIVFPSVGSIPLAHMLSGGDY 943
Query: 803 DGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
DGD ++ WD+N++ S P PAE LT
Sbjct: 944 DGDTPWICWDQNIVQNFNNSKLPDIEFPAEHYGLT 978
>gi|302883308|ref|XP_003040555.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
gi|256721441|gb|EEU34842.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
Length = 936
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 144/342 (42%), Gaps = 53/342 (15%)
Query: 501 KNWMGEFTAK-NIA-KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN---------GY 549
+ W F NIA + R+ L H IP + +H + RN G
Sbjct: 264 REWAAFFVQDCNIAPTFPKRVFLFAERGHGL--IPSMKSEHAVTGTIRNHRANILSPKGV 321
Query: 550 VFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV-VACWPAKDDGIRMSLRG 608
+ +DGIG+++P L EV L L+ P Q R KG+ + + D + +
Sbjct: 322 IMNDGIGRLSPSLMREVGNALSLESIP--LVIQGRIGSAKGLWITDMTSVGDEKWIEIYS 379
Query: 609 SMKKFKSCHTSLEICSWTRFQPGFLNRQI-ITLLSTLNVSDEIFW-TVQASMASKLNLML 666
S +K+ C W F P ++ + +L + E+ T+ MA +L L
Sbjct: 380 SQRKWA--------CDW--FDPAHRTLEVFVPILEAGAIDKELMRKTIVQHMAVQLRSDL 429
Query: 667 VASDVAFEVLTASCAEQGNTAAI----------MLSAGFKPQTEPHLQGMLTYELGELKE 716
+ A S + G + ++ GF P L+ EL +L
Sbjct: 430 ERAKNAMRQ-PESQGDSGFVGGLPKDFADIMNFLVDGGFDP-----LKLQFLNELDKLN- 482
Query: 717 CQCFIQVSESSLENCFSKHGSRFAE-TKKLQVINGF-VVIAKNPCLRPGDVRILEAVDRP 774
++ + CFS S F + T++L + G V++ + P P D++ ++AV RP
Sbjct: 483 ---VKVLAADEVHLCFS---SIFNDGTRELHDLEGMDVLVGRCPAHLPSDIQKVKAVFRP 536
Query: 775 ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
EL HL D ++FP GD+P + SG + DG+ ++ WD +++
Sbjct: 537 ELRHLKDIIIFPCTGDKPLAQKLSGGNYDGNRAWICWDPDMV 578
>gi|258570921|ref|XP_002544264.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904534|gb|EEP78935.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1348
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 135/357 (37%), Gaps = 67/357 (18%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R+ L S T TV + P + K V +DG ++ LA E+ L L
Sbjct: 655 KLFQRLSLALSRTIPTVVVRPGRIVRR----KDAEIVMNDGCALMSASLANEIKSCLGLK 710
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIR-MSLRGSMKKFK----SCHTSL-------E 621
P S +Q R AG KG+ A +G + + S K K C L E
Sbjct: 711 DENP-SCFQGRIAGAKGIWMVDNADSNGDSWIEISDSQLKIKPHPSKCKIMLDDYQLTFE 769
Query: 622 ICSWTR-FQPGFLNRQIITLLSTLNVSDEIF----------W-----------TVQASMA 659
+ SW+R +P LN Q++ +L V + W V
Sbjct: 770 VVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKELVRRESSAWYADFKNTITNEIVSRGWI 829
Query: 660 SKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQC 719
K L + AEQ A ++L +GF P +L+ +LT L + C
Sbjct: 830 QKQGLYDRRKTRRIDDFPTENAEQ---AILLLDSGFHPLRLAYLKELLTTFLKDY--CNR 884
Query: 720 F----IQVSESSLENCFSKHGSRFAETKKLQVINGF----------------VVIAKNPC 759
I++ ES+ C + AE +V GF V++ +NP
Sbjct: 885 LDSLKIRIPESTYAYCIADPYEVLAED---EVHFGFSKPWESYGYTDLDGVDVLLGRNPA 941
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
P D++ AV + EL H D +VFP G P SG D DGD +V WD L+
Sbjct: 942 HLPNDIQKRRAVFKKELRHFKDVIVFPTVGKVPLAGMLSGGDYDGDQVWVCWDPELV 998
>gi|320587947|gb|EFX00422.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1358
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 110/467 (23%), Positives = 185/467 (39%), Gaps = 95/467 (20%)
Query: 433 YVAPIVKD--ITSNSFSQKTGVFKRVKSIL--------SDGFNLCGRRYSFLAFSSNQLR 482
+VA +KD + S + G+ ++V S+L DGF L F ++
Sbjct: 506 WVAFYIKDAGFKKPALSDERGLGEKVPSVLLKKAYLFAEDGFGL------FPDGIVGRVE 559
Query: 483 DHSAWFFSKVGETSVLDIKNWMGEFT------AKNIAKYAARMGLCFSSTHATVEIPPTE 536
D S W F E V D+ W+ ++ + K +R+ L S T TV P +
Sbjct: 560 D-SEWRFGH--ELQVHDMLEWLLQYNRFHENRTQPYLKLFSRIALGLSRTIPTVVFEPEQ 616
Query: 537 VDHELPDIKR--NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVAC 594
+ H DI G V +DGIG+++ +A +V L L S P+A Q R KG+
Sbjct: 617 MRHHASDITAPATGKVMNDGIGRMSLSVARKVRFELGL--SDLPAAVQGRLGCAKGMWIL 674
Query: 595 WPAKDDGIR-MSLRGSMKKFKSC------HTSLEICSW-TRFQPGFLNRQIITLLSTLNV 646
P G + S +K+K C H +LE+ ++ + + LN+Q++ +L +
Sbjct: 675 DPTDTGGEDWIETYPSQRKWK-CDFVDPDHRTLEVRNYASAVRSAGLNQQLLPVLEDRAI 733
Query: 647 SDEIFWTVQAS-MASKLNLMLVASDVAFE---VLTASCAEQGNT---------------- 686
TV + L L A E + +A E +
Sbjct: 734 DKSRMRTVIGDILRGNLYRDLATQRTALEHPLLFSAWVQENSRSRDERSAHCQVRFLGGL 793
Query: 687 -------AAIMLSAGFKPQTEP---------------HLQGMLTYELGELKECQCFIQ-- 722
+LS GF P+ + L+ L +G +
Sbjct: 794 PDSDSEVVQFLLSGGFDPRVQKMIWDVAYKIQKAKCEKLKEKLNVRVGRTAYLHMVVDFL 853
Query: 723 --VSESSLENCFSKHGSRFAETKKLQ-----------VINGFVVIAKNPCLRPGDVRILE 769
+ E ++ CFS A+++ + ++ V++A++P DV+ +
Sbjct: 854 GVLEEGEVQVCFSSKFQVDADSEPDERGDDGSFSDSLLVGTDVLVARSPAHFASDVQRVR 913
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
AV R EL L D ++F +KGD P ++ SG D DGD+ +V WD ++
Sbjct: 914 AVFRKELCVLKDVVIFSRKGDSPLADKLSGGDYDGDMAWVCWDGRIV 960
>gi|367029127|ref|XP_003663847.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
gi|347011117|gb|AEO58602.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
Length = 1364
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 113/494 (22%), Positives = 189/494 (38%), Gaps = 99/494 (20%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQILKL 572
K +R+ L S T TV P ++ H DI + +DGIG+++ +A ++ +L L
Sbjct: 630 KLFSRIQLGLSKTTPTVTFEPGQIIHRPEDILSPTKKIMNDGIGRMSRSVARKIRDLLGL 689
Query: 573 DGSPPPSAYQIRYAGYKGV-VACWPAKDDGIRMSLRGSMKKF------KSCHTSLEICS- 624
+ PSA Q R KG+ + D + S +K+ + H +LE+
Sbjct: 690 --TDIPSAVQGRIGSAKGMWLMDVTDHGDADWIETYPSQRKWNCDDADEPFHRTLEVRKV 747
Query: 625 WTRFQPGFLNRQIITLLST----------------LNVSDEIFWTVQASMASKLNLM--- 665
+ +P LN Q + +L LN + F + ++ L
Sbjct: 748 ASELKPASLNLQFLPVLEDRAVDKKAMRCAISNRLLNDLAKQFEDQKTALKRPLQFRQWV 807
Query: 666 -----------LVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGEL 714
+ V F L A++ A+++++GF P+++ +L+ L +EL +
Sbjct: 808 HENSNNNRPERVKHGQVPF--LGGLPADKNEILALLMNSGFDPKSQRYLRD-LAWELQKQ 864
Query: 715 K----ECQCFIQVSESSL------------ENCF-----SKHGSRFAETKKLQVINGFVV 753
K + I+V S+ EN SK + + V+
Sbjct: 865 KCDTLRTKLNIKVGRSAYIYMVVDFWGVLEENEVHVGFSSKFRDELDGVSYTLLADCDVL 924
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE 813
+A++P D++ + AV +PELH L D +VF KGD P ++ SG D DGD +V WD
Sbjct: 925 VARSPAHFVSDIQKVRAVFKPELHALKDVIVFSTKGDIPLADKLSGGDYDGDFAWVCWDP 984
Query: 814 NLIPPSKKSCPPME------------------CTPAEAKPLTCH-------------VNH 842
++ + + P+E C + H
Sbjct: 985 EIVDNFENAEVPVEPDLSAYLRKDKTTFDELVCRTGKTGRRARHDAVYDMIDKSFQFAMQ 1044
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPS--HLKPKKYP 900
N IC + DE +LL+ L VD K G I T S L+ K+P
Sbjct: 1045 PNYLGICTNYKERLCYYNNSVSDEGAVLLSSLVGKLVDQSKQGIIFTADSWDRLRRDKFP 1104
Query: 901 DFMEIEEYQTYKSN 914
M +++ YK N
Sbjct: 1105 GKMYLDD-PAYKGN 1117
>gi|302893516|ref|XP_003045639.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
gi|256726565|gb|EEU39926.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
Length = 1363
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 159/396 (40%), Gaps = 73/396 (18%)
Query: 499 DIKNW---MGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV----- 550
D+ NW + + + K +R+ L S T TV + P + H+ + + Y+
Sbjct: 621 DLLNWAIGVERNCRQPVPKLFSRLALNLSKTVPTVVLAPNQFRHQDTMLGFHKYMREEDK 680
Query: 551 -----FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMS 605
DGIG+++ LA +VA L L +P A+Q R KG+ W + +
Sbjct: 681 IEQQDMGDGIGRMSRSLARKVATHLGLLEAP--CAFQARIGSAKGM---WIVDVEDDGLD 735
Query: 606 LRGSMKKFKS-----C------HTSLEICSWTR-FQPGFLNRQIITLLST---------- 643
++ + S C H + E+ W+R +P LN+Q I +L
Sbjct: 736 DDDWIETYPSQRKWECDYLDVHHRTFEVREWSRELRPAALNQQFIPVLEAQAPRPRLMRD 795
Query: 644 ------LNVSDEIFWTVQASMASKLNLM------LVASDVAFEVLTASCAEQG-NTAAIM 690
+N DE A+MA NL S V E+ + + +
Sbjct: 796 AIAAHLVNGLDEEIGGQMAAMAHPTNLRGWTHRGFDRSSVGHVPFLGGLPERDEDVISYL 855
Query: 691 LSAGFKPQTEPHLQ----GMLTYELGELKECQCFIQVSESS-------LENCFSKHGSRF 739
L AGF+ HL+ M + +LK + I++ S+ + +
Sbjct: 856 LDAGFEATKCRHLRDLVWSMQKRQADQLK-AKMNIKIPRSTYAYMVVDFTGTLEEGEVQL 914
Query: 740 AETKKLQ-------VINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
A + K Q +++G +++A+ P D++ ++AV RP L L D +VF KG
Sbjct: 915 AFSSKFQADGESDTLLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDVIVFSSKGKS 974
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME 827
P + SG D DGD +V WD ++ + P+E
Sbjct: 975 PLADLLSGGDYDGDKAWVCWDPKIVSNFSNAAKPVE 1010
>gi|226294787|gb|EEH50207.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 615
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 36/192 (18%)
Query: 389 VRRLVITPTKAYWF---LESKDVA--------DRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+ R +TP Y + LE+K+ D FLRV F+DE PI
Sbjct: 418 IHRAQVTPCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDESGD------------PI 465
Query: 438 VKDITSNSFSQKTGVFK-RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV--GE 494
D S + +F+ R K +L +G + GR++ FL FS + LR + WF + G
Sbjct: 466 RYD----SRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGG 521
Query: 495 T---SVLDIKNWMGEFT-AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV 550
T + + I+N +G F + AK AAR+G FS T ++ I ++ D++RNG V
Sbjct: 522 TLYNATVIIQN-LGRFDHIHSPAKQAARIGQTFSDTLTSIPI-SFDMLSVGEDVERNGRV 579
Query: 551 FSDGIGKITPDL 562
FSDG+G I+P L
Sbjct: 580 FSDGVGTISPSL 591
>gi|251765119|sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 123/539 (22%), Positives = 213/539 (39%), Gaps = 122/539 (22%)
Query: 508 TAKNIAKYAARMGLCFSST---HATVEIPPTEVDHELPDIKRNGYVF---------SDGI 555
+A +AKY AR L S T A + + P + R+G V +DG
Sbjct: 506 SAPTLAKYMARFALILSKTITWDADLSAVYVRRIKDEPCMDRHGNVVHKDQEPLIHTDGT 565
Query: 556 GKITPDLAME----------------------------VAQILKLDGSPPPSAYQIRYAG 587
G ++ DLA+ V + +D PP+ IR +
Sbjct: 566 GLVSVDLALNCPTSIFKGKFLKPQPLLMQFRLFYNGSAVKGTVLVDRRLPPATILIRPSM 625
Query: 588 YKGVVACWPAKDDGIR-------MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQI 637
K + P + G+R +S R + K + S EI S + R + +R +
Sbjct: 626 VK--IETHP-ELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSRFL 682
Query: 638 ITLLSTLNVSDEIFW-TVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFK 696
ITLL V +E F +Q+++ N D + + E +A ++LS
Sbjct: 683 ITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADMEDSMSARMILSG--I 740
Query: 697 PQTEPHLQGMLTYELGE-----------LKECQCFIQVSESSL-----ENCFSKHGSRFA 740
P E +LQ L + + + EC + ++ + E C +F+
Sbjct: 741 PLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFS 800
Query: 741 ETKKLQVINGFVVIAKNPCLRPGDVRILEA-----VDRPELHHLCDCLVFPQKGDRPHTN 795
G V++ K+P L GD+ +L+A +++ + + ++FP G R +
Sbjct: 801 ---------GDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLAD 851
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCP--------------PMECTPAEAKPLTCHVN 841
E + SD DGD+Y+V+ + L+ K S P P +C ++ + L H
Sbjct: 852 EMANSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEF 911
Query: 842 HQN-------LGQICNAHVVHADRSEYGAFDE--------NCILLAKLAATAVDSPKTGK 886
+ LG ++ + + DR + DE + L L A+D+PKTG
Sbjct: 912 LKTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGN 971
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
V +PS L K+YP FM +Y S+ ILG++Y + E++ ++ P+ +
Sbjct: 972 KVNIPSDLMVKQYPHFM--GRSFSYHSSSILGQIYDKA-----EDVESLRSCNVQPIGV 1023
>gi|115435092|ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|215693837|dbj|BAG89036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 152/366 (41%), Gaps = 56/366 (15%)
Query: 604 MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
+S R + K + S EI S + R F + +I LL V +E F + +
Sbjct: 66 VSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIE 125
Query: 661 KLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-ELGELKECQC 719
+ + A + + + A M+ +G P E +LQ L + L E K
Sbjct: 126 EADNARFDYAGALNIAFNYADMEDSMPARMILSGI-PLEESYLQSRLDFLSLLERKG--- 181
Query: 720 FIQVSESSLENCFSKHGSRFAETKKLQ-----------VINGFVVIAKNPCLRPGDVRIL 768
I+ + +++C+ G+ T KL ++G V++ K P L PGD+ +L
Sbjct: 182 -IKNGKIPIDDCYYLMGTA-DPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVL 239
Query: 769 EAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---PPSKK 821
+A ++ + ++FP G R +E + SD DGD+Y+V+ + L+ PSK
Sbjct: 240 KATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKP 299
Query: 822 SCP-----------PMECTPAEAKPLTCH--------VNHQNLGQICNAHV-------VH 855
P P + +E + + H ++ N V V
Sbjct: 300 WVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVS 359
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
D SE ++ + L L A+D+PK G V +P L K+YP FM + +Y S+
Sbjct: 360 LDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFM--DRSPSYHSSS 417
Query: 916 ILGRLY 921
ILG++Y
Sbjct: 418 ILGKIY 423
>gi|361130936|gb|EHL02666.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 902
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 81/182 (44%), Gaps = 45/182 (24%)
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK--------KSCPPMECTPAEAKPLT- 837
QKG R ++ SG DLDGD YY+ WDE L P + K P E + ++
Sbjct: 536 QKGARDLPSKLSGGDLDGDRYYIMWDE-LARPKRTFAAADYPKVSPVNIGRRVEREDMSD 594
Query: 838 ---CHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
+ LG+I H V AD+ G D C+L+A++ +TAVD KTG V M
Sbjct: 595 FFLQFMESDQLGRIAVNHRVKADQRPGGTNDPECLLMAEMHSTAVDFSKTGIPVDMSRMP 654
Query: 895 KPKKY-PDF------------------------MEIEE-------YQTYKSNKILGRLYR 922
KY PDF MEIE+ Y+ YKS KILG+LYR
Sbjct: 655 FGNKYRPDFEAPGPHVHIEEDGINFDDPTFEDPMEIEDEDDEYSTYRYYKSEKILGKLYR 714
Query: 923 QI 924
I
Sbjct: 715 AI 716
>gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gibberella zeae PH-1]
Length = 1079
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 78/332 (23%)
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV----VACWPAKDDGIR 603
G V +DGIG+++ L +V L+LD P +A Q R KG+ + P++ I
Sbjct: 394 GNVMNDGIGRVSLALMRKVQNALQLDYLP--AAIQGRIGSAKGLWVLDIGTQPSE---IW 448
Query: 604 MSLRGSMKKFKSC------HTSLEICSWTR-FQPGFLNRQIITLLSTLNVSDEIFWTVQA 656
+ S +K+ +C H +LE+ S + + LN Q I++L + +V +A
Sbjct: 449 LETYESQRKW-NCDWKDPEHRTLEVLSQSSDLKTATLNHQFISILESRSVDRR---NTRA 504
Query: 657 SMASKLNLMLVAS-DVAFEV------------------------------LTASCAEQGN 685
+M + + L S D A E L S AEQ
Sbjct: 505 AMVKHMKINLQTSLDHAKESMKQPELFRKWIHETSYASYGGRNESWFIGGLPKSWAEQ-- 562
Query: 686 TAAIMLSAGFKPQTEPHLQGMLTYEL-GELKECQ--CFIQVSESS--------------- 727
+ + GF+P +L + T + + K + I++S+S+
Sbjct: 563 -MSFLSDGGFEPLHLRYLHNLTTNHMESQWKNTKEKMRIEISQSTWALMVVDFQGVLGPD 621
Query: 728 -LENCFSKHGSRFAET-KKLQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
++ CFS S F + +K + GF V++A+ P P D++ ++AV +PEL HL D +V
Sbjct: 622 EVQLCFS---SPFNDGFEKRYDLEGFDVIVARCPAHLPSDIQKVKAVFKPELRHLKDVVV 678
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
FP G P + SG D DGD ++ WD +++
Sbjct: 679 FPFVGQEPLAGKLSGGDYDGDKAWICWDADIV 710
>gi|336268466|ref|XP_003348998.1| hypothetical protein SMAC_02019 [Sordaria macrospora k-hell]
gi|380094257|emb|CCC08474.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1403
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 160/391 (40%), Gaps = 80/391 (20%)
Query: 494 ETSVLDIKNWMGEF---TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDI---KRN 547
E V + NW+ + T + K +R+ L S T+A + + P ++ H DI
Sbjct: 645 EFKVSKMLNWLLQLDNNTWQPHLKLFSRIQLGLSKTYAIMTLEPHQIIHHKSDILSPSGT 704
Query: 548 GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV-------------VAC 594
V +DG+G+++ +A ++ +L L P SA Q R+ KG+ +
Sbjct: 705 DEVMNDGVGRMSRSVAKKIRDVLGLGDVP--SAVQGRFGSAKGMWVIDVNDMGDDDWIET 762
Query: 595 WPAK--------DDGIR-MSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLN 645
+P++ D R + +R + KS +L++ P +R + +
Sbjct: 763 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLL------PVLEDRAMDKVKMRQA 816
Query: 646 VSDEIFWTVQASMASK---LNLMLVASDVAFEVLTASCAE---------------QGNTA 687
+ D + +Q + + LN + +E + Q T
Sbjct: 817 IGDRLVNDLQRQFSEQKHALNRPVEFRQWVYESYSTRATRVSHGRVPFLAGLPDSQEETL 876
Query: 688 AIMLSAGFKPQTEPHLQGMLTYELGELK----ECQCFIQVSESSLENCFSKHGSRFAETK 743
++++GF P+ + LQ + ++L + K + + I+V S+ + E
Sbjct: 877 NYLMNSGFDPKKQKFLQD-IAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWDVLEEN- 934
Query: 744 KLQVINGF------------------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVF 785
+V GF V++A++P P D++ + AV +PELH L D ++F
Sbjct: 935 --EVHVGFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHMLKDVIIF 992
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
KGD P + SG D DGD+ +V WD ++
Sbjct: 993 STKGDIPLAKKLSGGDYDGDMAWVCWDPEIV 1023
>gi|342881586|gb|EGU82475.1| hypothetical protein FOXB_07061 [Fusarium oxysporum Fo5176]
Length = 1387
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 163/386 (42%), Gaps = 75/386 (19%)
Query: 499 DIKNW---MGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYV----- 550
D+ NW + + +++ + K +R+ L S T T+ I P + H + + Y+
Sbjct: 645 DLLNWAINIEQNSSQPVPKLFSRLALSLSKTVPTIVIEPHQFRHRDTMLGFHKYMSNKEK 704
Query: 551 -----FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR-- 603
DGIG+++ +LA +A + L +P A+Q R KG+ +DDG+
Sbjct: 705 KEQKDMGDGIGRVSRNLARRIATHMGLLETP--CAFQARIGSAKGMWIV-DVEDDGLDND 761
Query: 604 --MSLRGSMKKFKSC------HTSLEICSWTR-FQPGFLNRQIITLLSTLN--------- 645
+ S +K+ +C H + E+ W+R + LN Q I +L
Sbjct: 762 DWIETYPSQRKW-NCDFEDVHHRTFEVREWSRELRSAALNTQFIPVLEAQAPVPQDMRNV 820
Query: 646 VSDEIFWTVQASMASKLNLMLVASDV-AFEVLTASCAEQGNTAAI-------------ML 691
+S + +Q + +L M +++ F A GN + ML
Sbjct: 821 ISRHLTNGLQEEIGGQLAAMTHPTNLRGFTHRGFDRATLGNVPFVGALPEREEDIISYML 880
Query: 692 SAGFKPQTEPHLQGML----TYELGELK---------ECQCFIQV------SESSLENCF 732
AGF L+ M+ + +LK F+ V E ++ F
Sbjct: 881 DAGFDATKCRFLRDMVWNNQKRQADQLKAKMNIKIPRSTYAFMTVDFTGTLEEGEVQLAF 940
Query: 733 SKHGSRF-AETKKLQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD 790
S S+F A+ + +++G +++A+ P D++ ++AV RP L L D +VF KG
Sbjct: 941 S---SKFQADGESDTLLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDVIVFSSKGK 997
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLI 816
P + SG D DGDL ++ WD +++
Sbjct: 998 SPLADMLSGGDYDGDLAWICWDPDVV 1023
>gi|295666726|ref|XP_002793913.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277566|gb|EEH33132.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1176
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 119/506 (23%), Positives = 196/506 (38%), Gaps = 107/506 (21%)
Query: 507 FTAKNI----AKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDL 562
+A NI K R+ L S T +TV + EV PD G V +DG ++ L
Sbjct: 482 LSADNIHQSDCKLFQRLALGLSRTLSTVVLRREEVIF-CPDPP--GSVMNDGCALMSRSL 538
Query: 563 AMEVAQILKLDGSPPPSAYQIRYAGYKGV--VAC----WPAKDDGIRMSLRGSMKKFK-- 614
+E+ +IL L+ P + YQ R +G KG+ V C + D G + + S K
Sbjct: 539 GLEIKRILDLEALP--ACYQGRISGAKGIWMVDCDDSRFKGGDRGFGLEITESQLKISYP 596
Query: 615 -----------SCHTSLEICSWTR-FQPGFLNRQIITLLSTLNVS-DEIFWTVQASMA-- 659
+ E+ W++ P LN Q++ +L V I +Q ++
Sbjct: 597 PGPPHNPRLVDDTQLTFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHSHIKKLIQQEISIF 656
Query: 660 --SKLNLMLVASDVAFEVLTASCAEQGN----------------------TAAIMLSAGF 695
L ++ +++ VA G+ A ++L +GF
Sbjct: 657 YKEFLKVIHLSNGVACRKWLQKMKRFGDDGYSYKRQTRRIDNFFPSQYVEQAVLLLDSGF 716
Query: 696 KPQTEPHLQGMLTYELGELKEC--QCFIQVSESSLENCFS-------------------K 734
P P+L + + L + + + + VS+S+ C + +
Sbjct: 717 LPLKLPYLTQLFRWILKDYLDSLRKLKVSVSQSTYAYCIADPLGVLSPDEVHFGFSHEWE 776
Query: 735 HGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT 794
GS T+ L IN V++A+ P P D++ AV + EL H D ++FP GD P
Sbjct: 777 DGSVVVGTE-LHNIN--VLVARLPAHLPTDIQKRRAVYKNELRHFKDVIIFPTTGDVPLA 833
Query: 795 NEASGSDLDGDLYYVTWDENLIPP-SKKSCPPMECTPAEAKPLTCHVNHQNLGQ-----I 848
+ SG D DGD +V WD ++ S P +E L C+ N + +
Sbjct: 834 SLLSGGDYDGDQCWVCWDPIIVGEFSNTQFDPKTIPSSEQLGLVCYSLPMNQMRSIDQFL 893
Query: 849 CNAHVVHADRSEYGAF------------DENC---ILLAKLAATAVDSPKTGKIVTMPS- 892
+ +A S+ G D C + LA L + VDS K G + +P
Sbjct: 894 AKVFLFNAKPSQLGPCTIEHETLCYHNNDLGCKGAVTLAWLLSYLVDSKKAG--LELPGK 951
Query: 893 ---HLKPKKYPDFMEIEEYQTYKSNK 915
L+ + P +E Y+T++ K
Sbjct: 952 AWRRLRAEYMPVKLEQPAYKTFEHEK 977
>gi|299740231|ref|XP_001838952.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
gi|298404148|gb|EAU82883.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
Length = 1214
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 121/317 (38%), Gaps = 98/317 (30%)
Query: 406 KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFN 465
+D D F+RV F DE Q +S T V R+ +L G
Sbjct: 378 RDYTDHFIRVDFRDEDGQYFR---------------SSFEVDASTLVKTRIGGVLKGGIT 422
Query: 466 LCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE---FTAKNI---------- 512
+ GR + FLA+SS+ ++ HS WF + + K+ G+ TA+ I
Sbjct: 423 IAGRHFEFLAYSSSSMKVHSTWFLNP------FEFKDRTGQRIRVTAQRIREDIIPDIPA 476
Query: 513 --------AKYAARMGLCFSSTHAT--VEIPPTEVDHELPDI---------KRNGYV--- 550
+KYAAR+ L F+++ + + E PDI +R
Sbjct: 477 NVQLMRTPSKYAARIALAFTTSESVDGARLKRDEWVGPFPDIYPAVSHVKVRREEEQEEE 536
Query: 551 ---------------------------FSDGIGKITPDLAMEV------AQILKLDGSPP 577
F+DG+G I+ +L + + L++ +
Sbjct: 537 GEGESDTDEEESADEYDPQFKMVKLPPFTDGVGSISKELNDRIWKEYYEKRGLEVHPNFY 596
Query: 578 PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ-------P 630
PSA+ +R GYKGVVA P + I + LR SM KF+S L S R + P
Sbjct: 597 PSAWMLRMLGYKGVVAVDPEMEGPIHLRLRKSMHKFESLEDDLSQHSEVRIEIAEIYDKP 656
Query: 631 G--FLNRQIITLLSTLN 645
G +LNR + L+
Sbjct: 657 GLCYLNRFYLPFFPHLH 673
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 31/203 (15%)
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPE------LHHLCDCLVFPQKGDRPHTNEASGSD 801
+ G V+ +NP +RPGD++ + A+ +P L + +VF +G R + +G D
Sbjct: 830 LEGDCVVTRNPVVRPGDIQKVRAIGKPPRGVKCLFRDLKNVVVFSSQGRRSLPSCLAGGD 889
Query: 802 LDGDLYYVTWDENLIPPS-KKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSE 860
LDGD Y V E L+ + ++ P E ++ K V ++ IC+ V + +R
Sbjct: 890 LDGDKYAVIQYEGLLTETYRREADPDEAKDSKFKDKARKVKPED---ICDFFVQYVNRDV 946
Query: 861 YGAF---------DENCILLAKLAATAVDSPKTGKIVTMPSH-----LKPK--KYPDF-- 902
F D+ C +LAKL + AVD PK G + + + L+PK PD+
Sbjct: 947 LDPFNEKGYNQQGDDECSILAKLCSQAVDYPKKGIPIDLDNPEIKRILRPKITHKPDWDR 1006
Query: 903 ---MEIEEYQTYKSNKILGRLYR 922
++ + YKS+++LG LYR
Sbjct: 1007 DGSSDMVDTIYYKSSRVLGHLYR 1029
>gi|449436040|ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 135/599 (22%), Positives = 218/599 (36%), Gaps = 135/599 (22%)
Query: 451 GVFKRVKSILSDGFNLCGRRYSFLAFSSNQ-----------------LRDHSAWFFSKV- 492
G F I DG L RRY F F +R S + K+
Sbjct: 320 GSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIE 379
Query: 493 ----GETSVLDIKN-WMGEFTAKNIAKYAARMGLCFSST-HATVEIPPTEVDH--ELP-- 542
+V + ++ +M +IA Y AR L S T + +++ V ++P
Sbjct: 380 PYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCK 439
Query: 543 -----DIKRNG--YVFSDGIGKITPDLAMEVAQ--------------------------- 568
I R+G + +DG G I+ DLA+E
Sbjct: 440 DIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQ 499
Query: 569 -------ILKLDGSPPPSAYQIRYAGYKGVVA-------------CWPAKDDGIRMSLRG 608
+ L+ PP Q R Y G+ +D I++ +
Sbjct: 500 NKTLQLTLPGLELREPPLLIQFRLF-YNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDP 558
Query: 609 SMKKFKSCHTSLEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLV 667
++ F++ SLE+ + + FL+R +I LL+ V E F + + +
Sbjct: 559 DLENFET-ENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFS 617
Query: 668 ASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYEL---------GELKECQ 718
+ A V + A M+ AG P E +LQ L+ L G L +
Sbjct: 618 SKRAALRVSINNGEMDDFLVARMILAGI-PLDESYLQYRLSVLLKEEKKSLKSGRLHVPE 676
Query: 719 CFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA--VDR--P 774
C+ + +++ F+ ING V++ +NP L GD+ +L A V++ P
Sbjct: 677 CYYLMG--TVDPTFTLESGEVCVILYNGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVP 734
Query: 775 ELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPA--- 831
+ + + F KG R +E +G D DGD+Y+V+ + L+ + C P +P+
Sbjct: 735 VVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLL-EYFRPCEPWRPSPSTEV 793
Query: 832 --EAKPLTCHVNH----------QNLGQICNAHVVHADR-----------SEYGAFDENC 868
KP + Q A V AD E + NC
Sbjct: 794 VTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNC 853
Query: 869 IL-----LAKLAATAVDSPKT-GKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLY 921
I L + A+D+PK GK + +P HLK P FME +Y S ILG+++
Sbjct: 854 IRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFME-RGKNSYVSTSILGQIF 911
>gi|391867215|gb|EIT76465.1| hypothetical protein Ao3042_07438 [Aspergillus oryzae 3.042]
Length = 1260
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 152/394 (38%), Gaps = 75/394 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGY-VFSDGIGKITPDLAMEVAQILKL 572
K R+ L S T ATV + P+++ LP + G V +DG ++ LA + L +
Sbjct: 550 KLFQRISLGLSKTFATVALKPSQI---LPLEEPEGTPVMNDGCALMSRGLASRICDSLGI 606
Query: 573 DGSPPPSAYQIRYAGYKGVVAC-------------WPAKDDG---IRMSLRGSMKKFKSC 616
G+ P SA+Q R AG KG+ W D I+ G +
Sbjct: 607 TGATP-SAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQEPVDEE 665
Query: 617 HTSLEICSWTR-FQPGFLNRQIITLL----------------STLNVSDEIFWTVQA--- 656
+ E+ W++ LN Q++ +L V ++ VQ+
Sbjct: 666 KLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATVVQSDSP 725
Query: 657 ----SMASKLNLMLVASDVAF----EVLTASCAEQGNTAAIMLSAGFKPQT-EPHLQGML 707
S+ K+ +S A + A+ + AGF P+T P + +
Sbjct: 726 VLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRPLRKRLR 785
Query: 708 TYELGELKEC--QCFIQVSESSLENCFSKHGSRFAETKKLQVINGF-------------- 751
+G L + Q I+V S+ C + + K+ +V GF
Sbjct: 786 KCLIGLLDQYVEQLHIEVPLSTYAFCIA---DPYGVLKEDEVHFGFSSNWRDPEGQFEDN 842
Query: 752 ------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
V++A+ P P D++ AV +PEL H D +VFP G P + SG D DGD
Sbjct: 843 LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGD 902
Query: 806 LYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
+V WD+N++ + S PAE L H
Sbjct: 903 TTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEH 936
>gi|212534570|ref|XP_002147441.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210069840|gb|EEA23930.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1361
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/451 (23%), Positives = 175/451 (38%), Gaps = 82/451 (18%)
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
R+GL S T ATV I P + +L D V +DG ++ LA + L +DG P
Sbjct: 640 RIGLALSKTWATVVIQPHQF-LKLSD-PLGKPVMNDGCALMSRPLARAICAELGIDGITP 697
Query: 578 PSAYQIRYAGYKGVVACWPAKDD--GIRMSLRGSMKKFKS--C---------HTSLEICS 624
S +Q R AG KG+ DD G + + S K K C + E+ S
Sbjct: 698 -STFQGRIAGAKGLWMVDRDLDDDKGFWIQISDSQLKVKPHPCDFFGHVDEEKITFEVAS 756
Query: 625 WTR-FQPGFLNRQIITLLSTLN-----VSD----------EIFWTVQASMASKLNLMLV- 667
W++ + LN Q++ +L+ V+D + F V + L L+
Sbjct: 757 WSKPLRSSELNTQLLEVLNNRGQVRKRVADIAREAIRDIYKEFENVMERNSIPLARALIQ 816
Query: 668 ----ASDVAFEVLTASCAEQGNTAAI-----MLSAGFKPQTEPHLQGMLTYELGE----- 713
+D + +Q + I L AGF P+ P L+ + L +
Sbjct: 817 KIRPTADDGYSRTNIRRIDQWLSQTIESVIRFLEAGFSPRDFPPLRERMRICLNDTLNRY 876
Query: 714 LKECQCFIQVS--------------ESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPC 759
+ E I +S E+ + FS + V V++ + P
Sbjct: 877 VNELHIPIPLSTYAYCIADPYGVLEENEVHFAFSGQWRDCSYFDDAMVDGADVLVGRTPA 936
Query: 760 LRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPS 819
P D++ AV + EL H D +VF +G P + SG D DGD ++ WD+ ++
Sbjct: 937 HCPWDIQRRRAVWKSELRHFKDVIVFSTRGTTPLASLLSGGDYDGDRPWICWDQGIVETF 996
Query: 820 KKSCPPMECTPAE-------AKPLTC--------------HVNHQNLGQICNAHVVHADR 858
+ PP+E + E A+P++ ++ NLG+ H +
Sbjct: 997 TNTFPPLEESGPEHFGLVKHAQPMSTVGSVGDFLRNAFKFNLAMSNLGRCTVEHEKLSYD 1056
Query: 859 SEYGAFDENCILLAKLAATAVDSPKTGKIVT 889
+ G + LA L + VDS K+G +T
Sbjct: 1057 EKEGISSPLSLELATLLSHLVDSKKSGLQLT 1087
>gi|251765120|sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 152/366 (41%), Gaps = 56/366 (15%)
Query: 604 MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
+S R + K + S EI S + R F + +I LL V +E F + +
Sbjct: 667 VSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIE 726
Query: 661 KLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-ELGELKECQC 719
+ + A + + + A M+ +G P E +LQ L + L E K
Sbjct: 727 EADNARFDYAGALNIAFNYADMEDSMPARMILSGI-PLEESYLQSRLDFLSLLERKG--- 782
Query: 720 FIQVSESSLENCFSKHGSRFAETKKLQ-----------VINGFVVIAKNPCLRPGDVRIL 768
I+ + +++C+ G+ T KL ++G V++ K P L PGD+ +L
Sbjct: 783 -IKNGKIPIDDCYYLMGTA-DPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVL 840
Query: 769 EAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---PPSKK 821
+A ++ + ++FP G R +E + SD DGD+Y+V+ + L+ PSK
Sbjct: 841 KATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKP 900
Query: 822 SCP-----------PMECTPAEAKPLTCH--------VNHQNLGQICNAHV-------VH 855
P P + +E + + H ++ N V V
Sbjct: 901 WVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVS 960
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
D SE ++ + L L A+D+PK G V +P L K+YP FM + +Y S+
Sbjct: 961 LDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFM--DRSPSYHSSS 1018
Query: 916 ILGRLY 921
ILG++Y
Sbjct: 1019 ILGKIY 1024
>gi|317151716|ref|XP_001824860.2| RNA-directed RNA polymerase [Aspergillus oryzae RIB40]
Length = 1291
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 145/371 (39%), Gaps = 75/371 (20%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGY-VFSDGIGKITPDLAMEVAQILKL 572
K R+ L S T ATV + P+++ LP + G V +DG ++ LA + L +
Sbjct: 581 KLFQRISLGLSKTFATVALKPSQI---LPLEEPEGTPVMNDGCALMSRGLASRICDSLGI 637
Query: 573 DGSPPPSAYQIRYAGYKGVVAC-------------WPAKDDG---IRMSLRGSMKKFKSC 616
G+ P SA+Q R AG KG+ W D I+ G +
Sbjct: 638 TGATP-SAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQEPVDEE 696
Query: 617 HTSLEICSWTR-FQPGFLNRQIITLL----------------STLNVSDEIFWTVQA--- 656
+ E+ W++ LN Q++ +L V ++ VQ+
Sbjct: 697 KLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATVVQSDSP 756
Query: 657 ----SMASKLNLMLVASDVAF----EVLTASCAEQGNTAAIMLSAGFKPQT-EPHLQGML 707
S+ K+ +S A + A+ + AGF P+T P + +
Sbjct: 757 VLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRPLRKRLR 816
Query: 708 TYELGELKEC--QCFIQVSESSLENCFSKHGSRFAETKKLQVINGF-------------- 751
+G L + Q I+V S+ C + + K+ +V GF
Sbjct: 817 KCLIGLLDQYVEQLHIEVPLSTYAFCIA---DPYRVLKEDEVHFGFSSNWRDPEGQFEDN 873
Query: 752 ------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
V++A+ P P D++ AV +PEL H D +VFP G P + SG D DGD
Sbjct: 874 LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGD 933
Query: 806 LYYVTWDENLI 816
+V WD+N++
Sbjct: 934 TTWVCWDQNIV 944
>gi|83773600|dbj|BAE63727.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1260
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 152/394 (38%), Gaps = 75/394 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGY-VFSDGIGKITPDLAMEVAQILKL 572
K R+ L S T ATV + P+++ LP + G V +DG ++ LA + L +
Sbjct: 550 KLFQRISLGLSKTFATVALKPSQI---LPLEEPEGTPVMNDGCALMSRGLASRICDSLGI 606
Query: 573 DGSPPPSAYQIRYAGYKGVVAC-------------WPAKDDG---IRMSLRGSMKKFKSC 616
G+ P SA+Q R AG KG+ W D I+ G +
Sbjct: 607 TGATP-SAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQEPVDEE 665
Query: 617 HTSLEICSWTR-FQPGFLNRQIITLL----------------STLNVSDEIFWTVQA--- 656
+ E+ W++ LN Q++ +L V ++ VQ+
Sbjct: 666 KLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATVVQSDSP 725
Query: 657 ----SMASKLNLMLVASDVAF----EVLTASCAEQGNTAAIMLSAGFKPQT-EPHLQGML 707
S+ K+ +S A + A+ + AGF P+T P + +
Sbjct: 726 VLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRPLRKRLR 785
Query: 708 TYELGELKEC--QCFIQVSESSLENCFSKHGSRFAETKKLQVINGF-------------- 751
+G L + Q I+V S+ C + + K+ +V GF
Sbjct: 786 KCLIGLLDQYVEQLHIEVPLSTYAFCIA---DPYRVLKEDEVHFGFSSNWRDPEGQFEDN 842
Query: 752 ------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
V++A+ P P D++ AV +PEL H D +VFP G P + SG D DGD
Sbjct: 843 LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGD 902
Query: 806 LYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
+V WD+N++ + S PAE L H
Sbjct: 903 TTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEH 936
>gi|242790556|ref|XP_002481575.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218718163|gb|EED17583.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1360
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 187/465 (40%), Gaps = 82/465 (17%)
Query: 504 MGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLA 563
+ E ++ K +R+ L S T ATV + P + +LPD + V +DG ++ LA
Sbjct: 626 LNENRSQTDCKLFSRLSLALSKTWATVVVRPHQF-LKLPDAP-DKPVMNDGCALMSRSLA 683
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFK--------- 614
++ L +DG P SA+Q R AG KG+ + + R ++ S + K
Sbjct: 684 RDICTKLGIDGVTP-SAFQGRIAGAKGLWMVDRDRGEDERFWIQVSDSQLKVKPHPRDFF 742
Query: 615 ----SCHTSLEICSWTR-FQPGFLNRQIITLLSTL----NVSDEIFWTVQASMASKLNLM 665
+ E+ W++ + +N Q++ +L+ N +I S+ S+ ++
Sbjct: 743 GHVDKEKITFEVVGWSKPLRSSEINTQLLEVLNNRGQVRNRVADIARDAIRSIYSEFEIV 802
Query: 666 LVASDV----AFEVLTASCAEQG---------------NTAAIM--LSAGFKPQTEPHLQ 704
+ + + A E G N +I+ L AGF P+ L+
Sbjct: 803 MEKNSIPLARALIQKIRPNTEDGHSRTNIRRIDQWLSNNIESIIRFLEAGFSPRDFHPLR 862
Query: 705 GMLTYELGELKE---CQCFIQVSESSLENCFS-------KHGSRFAETKKLQ-------- 746
L L + + Q I + S+ C + ++ FA + + +
Sbjct: 863 ERLRICLRDTLDRYVTQLHIPIPLSTYAYCIADPYGVLEENEVHFAFSGQWRDCAYFDDA 922
Query: 747 VINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
+++G V++ + P P D++ AV + EL H D +VF KG P + SG D DGD
Sbjct: 923 MVDGVDVLVGRTPAHCPWDIQRRRAVWKSELRHFKDVIVFSTKGTTPLASLLSGGDYDGD 982
Query: 806 LYYVTWDENLIPPSKKSCPP-MECTP------AEAKPLTC--------------HVNHQN 844
+V WD ++ + PP +E P A+P+ ++ N
Sbjct: 983 RTWVCWDSGIVESFTNTTPPAIEPGPEHFGLVKHARPMETVSSVEDMLQNTFKFNLATTN 1042
Query: 845 LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVT 889
LGQ H A + G + LA L + VDS K+G +T
Sbjct: 1043 LGQCTVEHNKLAYDEKEGISSPLSLELATLLSHLVDSTKSGLQLT 1087
>gi|405952890|gb|EKC20647.1| Putative RNA-dependent RNA polymerase 2 [Crassostrea gigas]
Length = 266
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 571 KLDGSPPPSAYQIRYAGYKGVVACWPA-KDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQ 629
KL P PSA+QIR+ G KG+VA P +D + +R SMKKF+S +LEI T
Sbjct: 129 KLQIHPVPSAFQIRFGGCKGMVAQDPTLGNDTDILVIRKSMKKFESKSNNLEILDVTGPG 188
Query: 630 PGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
+LN+Q+ITLLS L + D +F +Q +M + +L+ +A L
Sbjct: 189 RLYLNKQVITLLSGLGIQDHVFLNLQENMLVDIADILLYDHLALPAL 235
>gi|116208690|ref|XP_001230154.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
gi|88184235|gb|EAQ91703.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
Length = 1372
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 151/359 (42%), Gaps = 59/359 (16%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVFSDGIGKITPDLAMEVAQILKL 572
K +R+ L S T V+ P ++ H DI G V +DGIG+++ +A +V L L
Sbjct: 631 KLFSRIQLGLSKTFPAVKFEPEQILHRPEDILSPTGKVMNDGIGRMSRGVARKVRDALGL 690
Query: 573 DGSPPPSAYQIRYAGYKGV-VACWPAKDDGIRMSLRGSMKKFK-----SCHTSLEICS-W 625
S PSA Q R KG+ + D + S +K+ H +LE+ S
Sbjct: 691 --SDIPSAIQGRMGSAKGMWLMDVGNSGDTDWIETYPSQRKWNCDDTDPYHRTLEVRSVA 748
Query: 626 TRFQPGFLNRQIITLLS-TLNVSDEIFWTVQASMASKLNLMLVASDVAF-------EVLT 677
+ +P LN Q + +L + + + + L L A + +
Sbjct: 749 SELKPAGLNLQFLPVLEDRARDKRRMKHAIGNRLTNNLELQFENQKTALKRPSQFRQWVN 808
Query: 678 ASCAEQGNTAA-------------------IMLSAGFKPQTEPHLQGMLTYELGELK--- 715
+ ++G+ +L++GF P+++ +LQ L +EL + K
Sbjct: 809 ENSNDRGSRVKHGQVPFLGGLPESKSEILHFLLNSGFDPKSQKYLQD-LAFELQKQKCDI 867
Query: 716 -ECQCFIQVSESSL------------ENCF-----SKHGSRFAETKKLQVINGFVVIAKN 757
+ I+V S+ EN SK + + + V++A++
Sbjct: 868 LRTKLNIRVGRSAYIYMVIDFWGVLEENEVHVGFSSKFRDESDDISYTLLADCDVLVARS 927
Query: 758 PCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
P DV+ + AV +PELH L D +VF KG+ P ++ SG D DGD+ +V WD +++
Sbjct: 928 PAHFVSDVQKVRAVFKPELHALKDVIVFSAKGNIPLADKLSGGDYDGDMAWVCWDPDIV 986
>gi|225683475|gb|EEH21759.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1341
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 118/476 (24%), Positives = 186/476 (39%), Gaps = 89/476 (18%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R+ L S T +TV + EV PD G V +DG ++ L +E+ +IL L+
Sbjct: 652 KLFQRLALGLSRTLSTVVLRREEVIF-CPDPP--GPVMNDGCALMSRSLGLEIKRILDLE 708
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF--KSCHTSLEICSWTRFQPG 631
P + YQ R +G KG+ W D R +G + F + + L+I Q
Sbjct: 709 TLP--ACYQGRISGAKGI---WMVDRDDSR--FKGGDRDFGLEITESQLKIMV-AATQSF 760
Query: 632 FLNRQIITLLSTLNVSDE-----IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN- 685
LN Q++ +L V I V L ++ +++ VA G+
Sbjct: 761 LLNLQVLKVLQHGGVGHSHIKKLIHQEVSIFYKEFLKVIHLSNGVACRKWLQKMKRFGDD 820
Query: 686 ---------------------TAAIMLSAGFKPQTEPHL----QGMLTYELGELKECQCF 720
A ++L +GF P P+L + +L L L++ +
Sbjct: 821 GYSYKRQTRRIDNFFPSQYVEQAVLLLDSGFLPLKLPYLTQLFRRILKDYLDSLRKLK-- 878
Query: 721 IQVSESSLENC-------FSKHGSRFAETKKL---QVINGF------VVIAKNPCLRPGD 764
+ VS+S+ C S F + K V+ G V++A+ P P D
Sbjct: 879 VSVSQSTYAYCIADPLGVLSPDEVHFGFSHKWDDGSVVVGTELHDMNVLVARLPAHLPTD 938
Query: 765 VRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP-SKKSC 823
++ AV + EL H D +VFP GD P + SG D DGD +V WD ++ S
Sbjct: 939 IQKRRAVYKNELRHFKDVIVFPTTGDVPLASLLSGGDYDGDQCWVCWDPIIVREFSNSHF 998
Query: 824 PPMECTPAEAKPLTCHVNHQNLGQ-----ICNAHVVHADRSEYGAF------------DE 866
P +E L CH N + + + +A S+ G D
Sbjct: 999 DPTTIPSSEQLGLVCHSLPMNQVRSIDQFLAKVFLFNAKPSQLGPCTIEHETFCYHNNDL 1058
Query: 867 NC---ILLAKLAATAVDSPKTGKIVTMPS----HLKPKKYPDFMEIEEYQTYKSNK 915
C ++LA L + VDS K G + +P L+ + P +E Y+T+ K
Sbjct: 1059 GCKGAVMLAWLLSYLVDSKKAG--LELPGKAWRRLRAEYMPVKLEQPAYKTFDHEK 1112
>gi|119479435|ref|XP_001259746.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
gi|119407900|gb|EAW17849.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
Length = 1338
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 161/401 (40%), Gaps = 88/401 (21%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R+ L S T+AT+ + P ++ H L D+ N V +DG ++ LA + L +
Sbjct: 622 KLFQRISLGLSKTYATIALKPWQILH-LGDVP-NRPVMNDGCALMSRRLANAICDQLGIT 679
Query: 574 GSPPPSAYQIRYAGYKGVVACW---------PAKDDGIRMSLRGSMKKFKSC-------- 616
G+ P SA+Q R A G W D + + S K +
Sbjct: 680 GNTP-SAFQGRIA---GAKGLWMVDRHNSGISGGGDDFWIQISDSQLKIQPHPQAWREPI 735
Query: 617 ---HTSLEICSWTR-FQPGFLNRQIITLL---------------STLNVSDEIFWTVQAS 657
+ E+ W++ P LN Q++ +L + + + F +V S
Sbjct: 736 DDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREYIAELTRAGIRAISQDFASVLES 795
Query: 658 MASKLNLMLV------ASDVA---------FEVLTASCAEQGNTAAIMLS-AGFKPQTEP 701
++ L L+ A D + E TA+ AE A I L+ AGF ++
Sbjct: 796 NSAALCRSLIQKIKPMADDGSSGMSQRMKRLEQWTANDAE----AIIRLTEAGFALRSFY 851
Query: 702 HLQGMLTYELGELKEC---QCFIQVSESSLENCFSKHGSRFAETKKLQVINGF------- 751
L+ L L +L + + I+V S+ C + + K+ +V GF
Sbjct: 852 PLRKRLGRCLRDLLDRYADELHIEVPLSTYAFCIA---DPYGVLKEDEVHFGFSNNWRDA 908
Query: 752 -------------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS 798
V++ + P P D++ AV +PEL H D +VFP GD P + S
Sbjct: 909 RGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTTGDIPLAHMLS 968
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
G D DGD ++ WD+N++ + S P E P E LT H
Sbjct: 969 GGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPEHFGLTKH 1009
>gi|115435090|ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group]
gi|56201770|dbj|BAD73220.1| unknown protein [Oryza sativa Japonica Group]
gi|56201877|dbj|BAD73327.1| unknown protein [Oryza sativa Japonica Group]
gi|113531834|dbj|BAF04217.1| Os01g0197900 [Oryza sativa Japonica Group]
Length = 387
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 41/232 (17%)
Query: 748 INGFVVIAKNPCLRPGDVRILEA-----VDRPELHHLCDCLVFPQKGDRPHTNEASGSDL 802
+G V++ K+P L GD+ +L+A +++ + + ++FP G R +E + SD
Sbjct: 24 FSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDF 83
Query: 803 DGDLYYVTWDENLIPPSKKSCP--------------PMECTPAEAKPLTCHVNHQN---- 844
DGD+Y+V+ + L+ K S P P +C ++ + L H +
Sbjct: 84 DGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTP 143
Query: 845 ---LGQICNAHVVHADRSEYGAFDE--------NCILLAKLAATAVDSPKTGKIVTMPSH 893
LG ++ + + DR + DE + L L A+D+PKTG V +PS
Sbjct: 144 SFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSD 203
Query: 894 LKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
L K+YP FM +Y S+ ILG++Y + E++ ++ P+ +
Sbjct: 204 LMVKQYPHFM--GRSFSYHSSSILGQIYDKA-----EDVESLRSCNVQPIGV 248
>gi|238505018|ref|XP_002383738.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220689852|gb|EED46202.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 1131
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 146/371 (39%), Gaps = 75/371 (20%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGY-VFSDGIGKITPDLAMEVAQILKL 572
K R+ L S T ATV + P+++ LP + G V +DG ++ LA + L +
Sbjct: 421 KLFQRISLGLSKTFATVALKPSQI---LPLEEPEGTPVMNDGCALMSRSLASRICDSLGI 477
Query: 573 DGSPPPSAYQIRYAGYKGVVAC-------------WPAKDDG---IRMSLRGSMKKFKSC 616
G+ P SA+Q R AG KG+ W D I+ G +
Sbjct: 478 TGATP-SAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQEPVDEE 536
Query: 617 HTSLEICSWTR-FQPGFLNRQIITLL---------------STLNVSDEIFWTVQASMAS 660
+ E+ W++ LN Q++ +L + + E F TV S +
Sbjct: 537 KLTFEVVKWSKPLHTVDLNTQLLAILEHGGHIKEYVAGLTRAGIRAVYEDFATVVQSDSP 596
Query: 661 KLNLMLV--------ASDVAF----EVLTASCAEQGNTAAIMLSAGFKPQT-EPHLQGML 707
L L+ +S A + A+ + AGF P+T P + +
Sbjct: 597 VLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDVEAVVRLTEAGFAPRTFRPLRKRLR 656
Query: 708 TYELGELKEC--QCFIQVSESSLENCFSKHGSRFAETKKLQVINGF-------------- 751
+G L + Q I+V S+ C + + K+ +V GF
Sbjct: 657 KCLIGLLDQYVEQLHIEVPLSTYAFCIA---DPYGVLKEDEVHFGFSSNWRDPEGQFEDN 713
Query: 752 ------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
V++A+ P P D++ AV +PEL H D +VFP G P + SG D DGD
Sbjct: 714 LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGD 773
Query: 806 LYYVTWDENLI 816
+V WD+N++
Sbjct: 774 TTWVCWDQNIV 784
>gi|156058730|ref|XP_001595288.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980]
gi|154701164|gb|EDO00903.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1390
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 155/372 (41%), Gaps = 75/372 (20%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEV----DHELPDIK--RNGYVFSDGIGKITPDLAMEVA 567
K AR L S ATV + + D PD+ + YV +DG G+++ LA ++
Sbjct: 622 KLFARTALVVSRNRATVTVDQAHIRRREDIRNPDVNNPKKTYVMTDGAGRLSLALARKI- 680
Query: 568 QILKLDGSPPPSAYQIRYAGYKGVVACWPAKD---DGIRM---------SLRGSMKKFKS 615
+ +L+ S P+A+Q R+ KG+ ++D D I + GS +
Sbjct: 681 -VFELELSYIPAAFQGRFGEAKGLWIVDRSEDIESDWIELYDEQCKWERGEEGSPEFDHW 739
Query: 616 CHTSLEICSWTR-FQPGFLNRQIITLL------------STLNVSDEIFWTVQASMASKL 662
H + E+ + + LN Q++ LL + LN E + + L
Sbjct: 740 SHRTFEVVGHSAPLKTADLNTQLLPLLVHQATDPRAMRNAILNALKEGLKQSLEELKTAL 799
Query: 663 N--------LMLVASDVAFEVLTASCAEQGNTAA-------IMLSAGFKPQTEPHLQGM- 706
+ L S V V + +G A +L AGF P+ ++ +
Sbjct: 800 TSPQELRSWIRLTNSSVQDRVKNGAIQWRGGLPAKHEDRLSTLLDAGFDPRKLHYIMELA 859
Query: 707 ---LTYELGELKECQCFIQVSESS-----------LE--------NCFSKHGSRFAETKK 744
+ ELKE + I V++S+ LE + F + S ++T
Sbjct: 860 KKAFDMKCEELKE-RLNITVAKSTKVYMVPDFWGVLEPNEVHLNFSSFVDNESGLSDT-- 916
Query: 745 LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDG 804
Q+ N V++A+NP P D++ + AV + EL HL D +VF KG ++ SG D DG
Sbjct: 917 -QLENVDVLVARNPAHYPSDIQRVTAVSKHELRHLKDVIVFSTKGYPSLADKLSGGDYDG 975
Query: 805 DLYYVTWDENLI 816
D+ +V WD ++
Sbjct: 976 DIAWVCWDPAIV 987
>gi|238580928|ref|XP_002389446.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
gi|215451719|gb|EEB90376.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
Length = 316
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 47/229 (20%)
Query: 412 FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRY 471
FLRV+F DEG + N ++I + F + +RV+ +G + GR +
Sbjct: 89 FLRVSFNDEGRLQLQFN----------REIDGDDF-----IKRRVQPFFREGLRVAGRVF 133
Query: 472 SFLAFSSNQLRDHSAWFFS-------KVGETSVLDIKNWMGE--FTAKNI---AKYAARM 519
FL +S + L++H+ +F + ++ SV++ + F +K I A+YAAR+
Sbjct: 134 YFLGYSQSALKEHAVYFMASFEQDGKQITTASVIESLGSFADLPFDSKLIYCPARYAARI 193
Query: 520 GLCFSSTHATVEIPPTEVDH---ELPDIK---RNG--YVFSDGIGKITPDLAMEV---AQ 568
F++T T TEV++ +LPDI+ +NG + +DG+G ++P+ A + Q
Sbjct: 194 SQGFTATDPTT----TEVENIVLDLPDIESTDKNGKKQIHTDGVGTMSPEFARSIHAERQ 249
Query: 569 ILKLDGSPPPSAY----QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF 613
+ P S Y QIR+ G KGV++ G + LR SM KF
Sbjct: 250 SRRRGRRRPLSEYARVLQIRFLGSKGVISVDHTL-SGKTVCLRPSMVKF 297
>gi|189208947|ref|XP_001940806.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976899|gb|EDU43525.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1436
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 99/435 (22%), Positives = 183/435 (42%), Gaps = 99/435 (22%)
Query: 547 NGYVFSDGIGKITPDLAMEVAQILKL---DGSPPPSAYQIRYAGYKGV----VACWPAKD 599
+G V DG I+ A+ + Q+ K P PS +Q R AG KGV +
Sbjct: 753 DGTVMDDGCSIISVGAALIIWQLYKKATGTTGPLPSIFQGRIAGAKGVWIISAESYTKDP 812
Query: 600 DGIR--MSLRGSMKKFKSC---------HTSLEICSWTR----------FQPGFLNRQI- 637
+ ++ + + S KF H + E+ +++ F P ++R++
Sbjct: 813 EHLKPWIMINASQWKFNPPEDALLDHEHHRTFELSNYSSSPTPSELHISFIPILVDRKVP 872
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLM-----------------LVASDVAFEVLTASC 680
+T++ +L + D +++A L+L+ +DV ++
Sbjct: 873 LTVIDSL-MKD----SLEAERTKLLDLLPDPVKMYDWVHRNGTKTQSGNDVPWQAAMPVS 927
Query: 681 AEQGNTAAIMLSAGFKP-QTEPHLQGMLTYELGE--LKECQCFIQVSESS----LENCFS 733
E+ ++L +GF P + +P Q + + + L+E + + +++S+ + + F
Sbjct: 928 LEE--KVKLLLESGFSPAKFQPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPFE 985
Query: 734 ---------KHGSRFAE----TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
+ S FA+ K L + + V++A+ P R D++ + V RPEL HL
Sbjct: 986 VLEPGQIQVQFSSSFADDTTDEKYLGLRDMEVLVARQPACRRSDIQKVRTVIRPELSHLV 1045
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT-PA--EAKPLT 837
D +VFP +G P + G D DGD++++ W+ L+ P + P++ PA E K T
Sbjct: 1046 DVVVFPSRGRYPLAGKLQGGDYDGDIFWICWEPQLVLPFLNAPAPVQSPDPARYEIKKTT 1105
Query: 838 CHV-------NHQNLGQICNAHVVHADRS----------EYGAFDENCILLAKLAA---- 876
V N ++ ++ + +S E A+ ENCI A L A
Sbjct: 1106 AKVRDVIDTRNPGDVDRLLEMAIEARSKSSMLGMVTVFAEKQAYRENCIHSATLEALYDM 1165
Query: 877 --TAVDSPKTGKIVT 889
VD+PK G ++
Sbjct: 1166 HDLLVDAPKQGYFLS 1180
>gi|333440980|gb|AEF32765.1| RdRP2 [Ascaris suum]
Length = 384
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 132/346 (38%), Gaps = 77/346 (22%)
Query: 355 PVFDAYEKLKDVQECLIKNPKLNE--GPKNIDDIAEVRRLVITPTKAYWF---------- 402
P+ +E ++ ++ L + +L E + +D VR++V+TPT+
Sbjct: 58 PLLRTFECIR--RDLLAETDQLKEIYAREQLDGYRRVRKVVLTPTRMLLVVPELLMGNRV 115
Query: 403 LESKD-VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILS 461
L + D DR LRV F D+ M N + Y+ Q T V + L
Sbjct: 116 LRTHDESGDRALRVQFRDDDGTRMKHNTVGPYLI------------QTT-----VHNALV 158
Query: 462 DGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAK------- 514
G + R + +LA S++Q+RD+ +FF
Sbjct: 159 RGVYIADRHFVYLASSNSQMRDNGCYFFDDGDGGXXXXXXXXXXXXXXXXXXXXXXXXXX 218
Query: 515 ---------YAARMGLCFS-STHATVEIPPTEVDHELP-----DIKRNGYVFSDGIGKIT 559
ARMG CF+ + ++++ + D Y FSDG G+++
Sbjct: 219 XXXXXXXXXLMARMGQCFTQAKECSIKLLHRRYNKTFDIIGGMDSSGEPYTFSDGCGRLS 278
Query: 560 PDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVV---------ACWPA------------K 598
P+ A +A L L G PS +QIR+ G KGVV A W K
Sbjct: 279 PEFAQRIADDLHL-GKCVPSCFQIRFRGIKGVVSVDPWLTERASWATEHNIADNMENYNK 337
Query: 599 DDGIRMSLRGSMKKFKS-CHTSLEICSWTRFQPGFLNRQIITLLST 643
+ + M R S KF + +EI ++ P LNR I +L T
Sbjct: 338 KNKLYMLFRPSQDKFHAPLSHKIEIVKYSSPTPVCLNRPYIAILLT 383
>gi|384493387|gb|EIE83878.1| hypothetical protein RO3G_08583 [Rhizopus delemar RA 99-880]
Length = 1222
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
+I G V++ +NPC DV+ ++AVD P L D ++F KGD ++ G D DGDL
Sbjct: 776 LITGDVIVTRNPCGLKSDVQKVKAVDCPALRMYTDLIIFSVKGDTSLASKLGGGDYDGDL 835
Query: 807 YYVTWDENLIPPSKKSCPPMEC----------TPAEAKPLTCHVNHQ------------- 843
Y WD+ ++ P K S E + ++ H N +
Sbjct: 836 IYCCWDQRIVEPFKPSPVVKELKQVYQAFEQDKTTVGQQVSSHTNTEKALQMSFISAQIP 895
Query: 844 --NLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
LG N V A+R+ D N LA++ A VD+PK G
Sbjct: 896 DGTLGLYENWRTVLAERTSLD--DPNVSYLAQMCARLVDAPKQG 937
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 108/272 (39%), Gaps = 69/272 (25%)
Query: 410 DRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGR 469
DRFL +T + +M + +Y+ P++ L R
Sbjct: 351 DRFLEITTSNACSPSMIRHFKDFYMKPLL---------------------------LMQR 383
Query: 470 RYSFLAFSSNQLRDHSAWFFSKVG----ETSVLDIKNW---MGEFTAKNIAKYAARMGLC 522
+ FL ++D + FF+ G S+ + +W + E ++KY +RM L
Sbjct: 384 VFRFLF-----IKDATLVFFATEGIDLEPISIQQVIDWHLPITENWGMTMSKYVSRMSLG 438
Query: 523 FSSTHATVEIPPTEVDHELPDI-----KRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
+SS+ T++ P ++++ + D+ K + +DG G I+ E+ D
Sbjct: 439 YSSSIPTIQFEPDQIEY-IDDVYSKTAKGSAACMTDGCGIISCAAMKEIMGCQTTDEL-- 495
Query: 578 PSAYQIRYAGYKGVVACWPAKD--DGIRMSLRGSMKKFKSC-----------HTSLE--- 621
P A Q R G KG+ P D G + +R S KFK+ H + +
Sbjct: 496 PCAVQGRIGGAKGIWIISPDLDFNSGKYIKIRKSQNKFKTGLPQSNLRLDPHHYTFDLVK 555
Query: 622 --ICSWTRFQPGFLNRQIITLLSTLNVSDEIF 651
IC + P FLN Q I +L+ V E+F
Sbjct: 556 NSICVY----PSFLNTQFIQVLAAGGVPTEVF 583
>gi|226287106|gb|EEH42619.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1366
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 118/500 (23%), Positives = 188/500 (37%), Gaps = 112/500 (22%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R+ L S T +TV + EV PD G V +DG ++ L +E+ +IL L+
Sbjct: 652 KLFQRLALGLSRTLSTVVLRREEVIF-CPDPP--GPVMNDGCALMSRSLGLEIKRILDLE 708
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF-------------------- 613
P + YQ R +G KG+ W D R +G + F
Sbjct: 709 TLP--ACYQGRISGAKGI---WMVDRDDSR--FKGGDRDFGLEITESQLKISYPHGPPHN 761
Query: 614 -----KSCHTSLEICSWTR-FQPGFLNRQIITLLSTLNVSDE-----IFWTVQASMASKL 662
+ + E+ W++ P LN Q++ +L V I V L
Sbjct: 762 PRLVADNTQLTFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHSHIKKLIQQEVSIFYKEFL 821
Query: 663 NLMLVASDVAFEVLTASCAEQGN----------------------TAAIMLSAGFKPQTE 700
++ +++ VA G+ A ++L +GF P
Sbjct: 822 KVIHLSNGVACRKWLQKMKRFGDDGYSYKRQTRRIDNFFPSQYVEQAVLLLDSGFLPLKL 881
Query: 701 PHL----QGMLTYELGELKECQCFIQVSESSLENC-------FSKHGSRFAETKKL---Q 746
P+L + +L L L++ + + VS+S+ C S F + K
Sbjct: 882 PYLTQLFRRILKDYLDSLRKLK--VSVSQSTYAYCIADPLGVLSPDEVHFGFSHKWDDGS 939
Query: 747 VINGF------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGS 800
V+ G V++A+ P P D++ AV + EL H D +VFP GD P + SG
Sbjct: 940 VVVGTELHDMNVLVARLPAHLPTDIQKRRAVYKNELRHFKDVIVFPTTGDVPLASLLSGG 999
Query: 801 DLDGDLYYVTWDENLIPP-SKKSCPPMECTPAEAKPLTCHVNHQNLGQ-----ICNAHVV 854
D DGD +V WD ++ S P +E L CH N + + +
Sbjct: 1000 DYDGDQCWVCWDPIIVREFSNSHFDPTTIPSSEQLGLVCHSLPMNQVRSIDQFLAKVFLF 1059
Query: 855 HADRSEYGAF------------DENC---ILLAKLAATAVDSPKTGKIVTMPS----HLK 895
+A S+ G D C ++LA L + VDS K G + +P L+
Sbjct: 1060 NAKPSQLGPCTIEHETFCYHNNDLGCKGAVMLAWLLSYLVDSKKAG--LELPGKAWRRLR 1117
Query: 896 PKKYPDFMEIEEYQTYKSNK 915
+ P +E Y+T+ K
Sbjct: 1118 AEYMPVKLEQPAYKTFDHEK 1137
>gi|302823993|ref|XP_002993644.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
gi|300138572|gb|EFJ05336.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
Length = 884
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 120/480 (25%), Positives = 185/480 (38%), Gaps = 97/480 (20%)
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLD 573
+R+ L S T P E+ + NG + +DG G I+ DLA +
Sbjct: 256 GSRLQLALSKTWTANHDPGGEIA-----VGCNGKPLIHTDGTGFISEDLAKQEY------ 304
Query: 574 GSPPPSAYQIR--YAG--YKGVVACWPAKDDGIRMSLRGSMKKFKS--------CHTSLE 621
P+ Q+R Y G KG + + R SM K K+ SLE
Sbjct: 305 ----PALLQVRLFYHGIAVKGTLLTLKTLQHKT-IVYRDSMLKVKADPKLANCPSFNSLE 359
Query: 622 ICSWTRFQP-GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC 680
IC+ + P L+R +I LL V + F +Q + M D+A S
Sbjct: 360 ICTTSHKPPVASLSRYVIALLLEGGVPESFF--IQVVQEAIAKAMTPLQDIAAAHRLCSR 417
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQG-MLTYELGELKECQCFIQVSESSLENCFSKHGS-- 737
G+ M+ AG P T+ L+ ++T +LK + LE + GS
Sbjct: 418 FSFGDMPRRMILAGI-PLTDHFLRNSLMTMIRTQLKR----YAKANVPLEGSYYLMGSAD 472
Query: 738 ---RFAETK-KLQVING-----FVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLV 784
A + + + NG V++ K+P + PGDV + EA EL ++
Sbjct: 473 PTNTLARNQVAILLENGPLHRHKVLVYKHPGMHPGDVHVFEATWNQELESSLGNSKYVII 532
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME-----------CTPAEA 833
FP KG R +E + SDLDGDLY++ +E + K P E C
Sbjct: 533 FPTKGPRSVVHEIANSDLDGDLYWICTNEQVSNLYKPQLPWQEKRTNGTTAVPSCLGMSP 592
Query: 834 KPLTCHVNHQNLGQICNAH----------VVHADRSEYGAFD--------ENCIL-LAKL 874
+ + + L I + ++H D+ +FD +NC+L LA L
Sbjct: 593 EVIMSRLVAMFLRAIFKPNFAISRAATNWLIHMDKYLSTSFDNVREREFRQNCLLELADL 652
Query: 875 AATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY-------------QTYKSNKILGRLY 921
A+D+ KTG++VT+ L K +EE Y+S I G++Y
Sbjct: 653 YYLALDADKTGEMVTIEDRLLCDKIKPHFLVEENSNNPNRRKIQQQDNVYRSTSIFGKIY 712
>gi|222617920|gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 166/396 (41%), Gaps = 72/396 (18%)
Query: 604 MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTV-QASMA 659
+S R + K + S EI S + R + +R +ITLL V +E F + Q+++
Sbjct: 727 VSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIE 786
Query: 660 SKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE------ 713
N D + + E +A ++LS P E +LQ L + +
Sbjct: 787 GAENACYDYEDALRIAFSYADMEDSMSARMILSG--IPLEESYLQHRLDFMAQQERKGIK 844
Query: 714 -----LKECQCFIQVSESSL-----ENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
+ EC + ++ + E C +F+ G V++ K+P L G
Sbjct: 845 QGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFS---------GDVLVYKHPGLHFG 895
Query: 764 DVRILEA-----VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
D+ +L+A +++ + + ++FP G R +E + SD DGD+Y+V+ + L+
Sbjct: 896 DIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLEH 955
Query: 819 SKKSCP--------------PMECTPAEAKPLTCHVNHQN-------LGQICNAHVVHAD 857
K S P P +C ++ + L H + LG ++ + + D
Sbjct: 956 FKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMD 1015
Query: 858 RSEYGAFDE--------NCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ 909
R + DE + L L A+D+PKTG V +PS L K+YP FM
Sbjct: 1016 RLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFM--GRSF 1073
Query: 910 TYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
+Y S+ ILG++Y + E++ ++ P+ +
Sbjct: 1074 SYHSSSILGQIYDKA-----EDVESLRSCNVQPIGV 1104
>gi|327301211|ref|XP_003235298.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
gi|326462650|gb|EGD88103.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
Length = 1302
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 150/378 (39%), Gaps = 78/378 (20%)
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVA 567
T + +K R+ L S T AT+ + P E ++ D R + SDG ++ L +A
Sbjct: 592 THQEYSKLFTRIRLGLSRTTATITLRPEEFIYD--DDPRQEKM-SDGCAMMSRSLGRAIA 648
Query: 568 QILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKS------------ 615
L L S P+ +Q R AG KG+ W D + ++G ++ F++
Sbjct: 649 DSLCL--SKVPTCFQGRIAGAKGI---WVVAKDNRDIHVKG-LRHFETERGYWLVINASQ 702
Query: 616 -------CHTSL---------EICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASM 658
C TSL ++ S+++ QP LN Q + +L + E ++
Sbjct: 703 LKVQPPPCDTSLMIDKHQLTFDVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLILEE 762
Query: 659 ASKL-NLMLVASDVAFEVLTASCAEQGNTAA--------------------IMLSAGFKP 697
A K + L+ + A + G A+ ++L AGF P
Sbjct: 763 ADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALNESTFSHSLTGRLNMLLDAGFSP 822
Query: 698 QTEPHLQGMLT-YELGEL--KECQCFIQVSESSLENCFSKHGSRFAE------------- 741
T ++ + Y LG K I+ +S+ C E
Sbjct: 823 STLAFVRRLFKEYSLGGFVQKLEALKIKTPQSTYVYCIPDPYGVLEEGQVHLDLGDSWED 882
Query: 742 -TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGS 800
T L I+ V++A+ P P D++ AV P L +L + +FP KG+ P + SG
Sbjct: 883 GTTDLDGID--VLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFPTKGEVPLASLLSGG 940
Query: 801 DLDGDLYYVTWDENLIPP 818
D DGD +V WD+ ++ P
Sbjct: 941 DYDGDEVWVCWDQEIVKP 958
>gi|302501841|ref|XP_003012912.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
gi|291176473|gb|EFE32272.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
Length = 1125
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 151/374 (40%), Gaps = 77/374 (20%)
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVA 567
T + +K R+ L S T AT+ + P E ++ D R + SDG ++ L +A
Sbjct: 314 THQEYSKLFTRIRLGLSRTTATITLRPEEFIYD--DDPRQEKM-SDGFAMMSRSLGRAIA 370
Query: 568 QILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD------GIR---------MSLRGSMKK 612
L L S P+ +Q R AG KG+ AKDD G+R + + S K
Sbjct: 371 DSLCL--SKVPTIFQGRIAGAKGIWLV--AKDDQDIHVKGLRNFETERGYWLVINASQLK 426
Query: 613 FKS----CHTSLEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL--NLM 665
+ + ++ S+++ QP LN Q + +L V+ E ++ A K +
Sbjct: 427 VQPPPLVILLTFDVSSYSQPPQPVHLNIQFLMVLQDRGVNKEYILSLIPDEADKFYSEFL 486
Query: 666 LV---------------ASDVAFEV--LTASCAEQGNTAAI--MLSAGFKPQTEPHLQ-- 704
LV D + ++ L S +TA + +L AGF P ++
Sbjct: 487 LVQNGDPVACRAWVRKNGGDASSQIPALNESTFPTNHTAQLNGLLDAGFSPSNLAFVRRL 546
Query: 705 ------GMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAE--------------TKK 744
G +L LK I++ +S+ C E T
Sbjct: 547 FKENSLGGFVQKLEALK-----IKIPQSTYVYCIPDPYGVLEEGQIHLDLGDSWEDGTTD 601
Query: 745 LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDG 804
L I+ V++A+ P P D++ AV P L +L +FP KGD P + SG D DG
Sbjct: 602 LDGID--VLVARAPAHLPSDIQKCRAVFHPALRYLKHVAIFPTKGDVPLASLLSGGDYDG 659
Query: 805 DLYYVTWDENLIPP 818
D +V WD+ ++ P
Sbjct: 660 DEVWVCWDQEIVKP 673
>gi|452845289|gb|EME47222.1| hypothetical protein DOTSEDRAFT_69242 [Dothistroma septosporum
NZE10]
Length = 816
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 110/477 (23%), Positives = 178/477 (37%), Gaps = 124/477 (25%)
Query: 465 NLCGRRYSFLAFSSNQLRDHSA------------WFFSKVGETSVLDIK-----NWMGEF 507
+L GRR+ F + R+ S+ +FF+ G+ +V D NW F
Sbjct: 7 SLMGRRWQFFLVQPKK-REKSSDPDSTKAGMSTLFFFAVGGDLAVPDYSLREALNWSLPF 65
Query: 508 T--AKNIA-KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGY--------------- 549
A+ A K AR+ L S T+ T+ ++D++ D+
Sbjct: 66 VENARQPACKAYARLDLSASRTYPTLAFDLADIDYDAEDMLSTNVADDRRFEDPQLAYRF 125
Query: 550 ----------VFSDGIGKITPDLAMEVAQILKLDGSPP-PSAYQIRYAGYKGVVACW--P 596
V SDG +I+ A +AQI ++ G P PS Q R G KG+ W
Sbjct: 126 KEHFNPCKRIVMSDGCSEIS---AWAMAQIAQMLGLPEVPSVIQGRIFGAKGI---WYVS 179
Query: 597 AKDDGIRMSLRGSMKKFKSCHTSLEI-------------------------CSWTRFQPG 631
A D R + + K K ++ +++ C + G
Sbjct: 180 ADQDTARSTEKPPGKNIKIANSQIKVRYPLHEVRHFGKELLTMNVVKASGPCKPSILHIG 239
Query: 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLM---------LVASDVAFEV------L 676
F+ + L + I VQA M L + + + +E+ +
Sbjct: 240 FMPLLEDRKVPELAIRGFIGPRVQAEMNDLLTSLETPVQLREWMAQQNEYYEICNRENGI 299
Query: 677 TASCA---EQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE---LKECQCFIQVSESS--- 727
T + +G ML +GF PQ + +L ++ +G LK I V S+
Sbjct: 300 TTAGGFPWSKGEQIIQMLESGFFPQEDAYLAELVVEMVGNYLTLKRKNFKIHVPRSTTVI 359
Query: 728 -----------------LENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
F H + A L +N V+ +NP + D++ L A
Sbjct: 360 GISDPLGCLQPGEIHIGFSTPFRDHKAG-ASWMHLHGMN--VLSTRNPSMAGSDMQKLRA 416
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME 827
V +PEL HL D +VFP +G RP + G D DGD +++ W+ +L+ P + P E
Sbjct: 417 VYKPELAHLRDVVVFPSQGMRPLAGKLQGGDYDGDTFWLCWEPSLVDPFLNAPAPWE 473
>gi|414588061|tpg|DAA38632.1| TPA: hypothetical protein ZEAMMB73_690745 [Zea mays]
Length = 462
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 749 NGFVVIAKNPCLRPGDVRILEA-----VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
+G V++ K+P L GD+ IL A +++ + + + ++FP G R +E + SD D
Sbjct: 104 SGDVLVFKHPGLHFGDIHILTARQIDGLEKNFIGYSKNAILFPTSGQRSLADEMANSDFD 163
Query: 804 GDLYYVTWDENLIPPSKKSCPPM-------ECTPAEAKP-----------------LTCH 839
GD ++V+ + L+ +K P E +KP T
Sbjct: 164 GDEFWVSRNNMLLKTFEKRSEPWVELLKLKETQHRLSKPGDLNELILERVLFNECLTTMF 223
Query: 840 VNHQNLGQICNAHVVHADR--------SEYGAFDENCILLAKLAATAVDSPKTGKIVTMP 891
+ + G + + H DR E + EN I L L A+D G V +
Sbjct: 224 IPNYTKGLAPDCWLAHMDRLLTEGVDQDEKKSIVENMIKLVDLYYAALD----GHKVDVD 279
Query: 892 SHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQ----IKGAYDENISVS-----SEVDINP 942
HL+ K YP FME + +++Y S+ ILGR+Y + I DE I ++ SEV+ P
Sbjct: 280 RHLRVKAYPHFMEKKGFESYHSSSILGRIYDETEEIIAQQCDEQIQITTLPCFSEVEATP 339
>gi|168064128|ref|XP_001784017.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162664466|gb|EDQ51185.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1042
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 128/558 (22%), Positives = 208/558 (37%), Gaps = 111/558 (19%)
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDI-----KRNGYVFS--DGIGKIT 559
T ++K+A+R+ L S + T + E+ ++PDI +G S +G +I+
Sbjct: 411 TVPTMSKFASRLQLALSKS-VTANLNWDEIKVRQIPDILSTTLDNSGKFMSHTEGTAEIS 469
Query: 560 PDLAMEV-AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD--GIRMSLRGSMKKFKS- 615
PD+A + + K G P ++ + G + W G+++ R SM K +
Sbjct: 470 PDVARLIPCSVFKGKGYPTLIQGRLFWKGM-AIKGTWQVNHQLKGLQILYRPSMVKVTTD 528
Query: 616 -------CHTSLEICS----WTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNL 664
S EI + + + L++ +I LLS NV F L+
Sbjct: 529 AALKDFPTINSFEIVNTNTCYKLKEEAKLSQDLIFLLSVNNVPASFFLEHVEKALENLHS 588
Query: 665 MLVASDVAFEVLTASCAEQ---GNTAAIMLSAGF---KPQTEPHLQGMLTYELGELKECQ 718
F L C++ G+ M+ A PQ + +L+ + ++ L++
Sbjct: 589 FFTTRGQVFREL-KRCSQDYDVGDQTLRMIMANIPMNNPQMQKNLKKISQDKIALLRK-G 646
Query: 719 CFIQVSESSLENCFSKHGSRFAETKKLQVIN------GFVVIAKNPCLRPGDVRILEAV- 771
C L R + ++ VI G V++ KNP GDV + +AV
Sbjct: 647 CVPLPQSCYLMGTCDPTKERVLKPNEVAVIKNGDKVLGKVLVYKNPGKHWGDVHVFDAVW 706
Query: 772 -DR--PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV------------------- 809
+R P + + F +G+RP +E + SDLDGD Y+V
Sbjct: 707 DERLNPYVGPANQTIFFSVRGNRPVVDEIANSDLDGDFYWVCFNTQATNSFLDYFSSKVV 766
Query: 810 --------------------TWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQIC 849
T DEN + P EC P PL+ ++ +
Sbjct: 767 FCQLIGVRIAAVDLSFHSKPTLDENR---GEDKLPGWECKPM---PLSATYWIAHMDRYL 820
Query: 850 NAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQ 909
E E + L + A+D+ KTG+ V + L+PK YP FM +
Sbjct: 821 TLKYADEYSEELELLSETILELIDIFYRALDADKTGEEVKLRRGLEPKCYPHFMRKQNQT 880
Query: 910 T----YKSNKILGRLYRQIKGAYDENISVSSEVDINPVD-IHYDTDLEVPGSVDFTADAR 964
+ Y S ILG++Y + D+N + + P + I YD E G D
Sbjct: 881 SRRTYYTSTSILGQIYDMV----DKN---ADRLGYRPEETIAYDPKFEF-GRFD------ 926
Query: 965 NQKCSYDGQLNGLLGQYN 982
Y GLL QYN
Sbjct: 927 ----RYIENWRGLLQQYN 940
>gi|296817563|ref|XP_002849118.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238839571|gb|EEQ29233.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1255
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 163/419 (38%), Gaps = 97/419 (23%)
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
R+ L S T T+ + P EV + D SDG I+ L + L L S
Sbjct: 606 RIRLGLSRTTPTITLRPEEVIY---DNDPRQEQMSDGCALISKSLGKAITDSLGL--SKV 660
Query: 578 PSAYQIRYAGYKGVVACWPAKDD------GIR----------MSLRGSMKKFKS--C--- 616
P+ +Q R+AG KG+ A+DD G+R M + S K K C
Sbjct: 661 PACFQGRFAGAKGIWIV--ARDDQCPQVNGLRQTFETDRGYWMVINASQLKVKPPPCDRG 718
Query: 617 ------HTSLEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVAS 669
+ ++ S+ R Q +LN Q + +L ++ E + A K
Sbjct: 719 VLLDKHQMTFDVSSYARTPQSVYLNTQFLMVLQNAGINKEYLSFIIQMEADKF------Y 772
Query: 670 DVAFEVL----TASCAE-----QGNTAA-----------------IMLSAGFKPQTEPHL 703
D E++ +A+C + G+TA ++L AGF P L
Sbjct: 773 DGYLEIIRTGDSAACRDWIKRMGGSTAVKATMSDGFPPDTLGQIIMLLDAGFLPSKLYFL 832
Query: 704 QGMLTY-------ELGELKECQCFIQVSESSLENCFS-------------KHGSRFAETK 743
+ + + +LG+LK I++ +S+ C + G + +T
Sbjct: 833 RRLFKFYFDNYLQKLGDLK-----IKIPKSTYVYCIADPYGVLEEGEVHLAPGDNWEDTP 887
Query: 744 KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
L I+ +++A+ P P D++ A+ P L HL +F KGD P + SG D D
Sbjct: 888 DLDGID--ILVARAPAHLPSDIQKCRAIFHPALRHLKGVAIFSTKGDVPLASLLSGGDYD 945
Query: 804 GDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQIC-NAHVVHADRSEY 861
GD + W+ L+ P + P + P K V+ + + C +H+ +S Y
Sbjct: 946 GDEVWACWEPGLVNPFRNQ--PFQEIPKPEKYGLIKVSQRVVDFSCLLSHLADTRKSGY 1002
>gi|326475512|gb|EGD99521.1| hypothetical protein TESG_06788 [Trichophyton tonsurans CBS 112818]
Length = 1298
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 152/384 (39%), Gaps = 84/384 (21%)
Query: 505 GEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAM 564
G T + +K R+ L S T AT+ + P E ++ D R + SDG ++ L
Sbjct: 585 GRNTHQEYSKLFTRIRLGLSRTTATITLRPEEFIYD--DDPRQEKM-SDGFAMMSRSLGR 641
Query: 565 EVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD------GIR---------MSLRGS 609
+A + L S P+ +Q R AG KGV AKDD G+R + + S
Sbjct: 642 AIADSICL--SKVPTCFQGRIAGAKGVWVV--AKDDQDIHVKGLRHFETERGYWLVINAS 697
Query: 610 MKKFKS--CHTSL---------EICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQAS 657
K + C TSL ++ S+++ QP LN Q + +L + E ++
Sbjct: 698 QLKVQPPPCDTSLMFDKHQLTFDVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLIPE 757
Query: 658 MASKL-NLMLVASDVAFEVLTASCAEQGNTAA--------------------IMLSAGFK 696
A K + L+ + A + G A+ + L AGF
Sbjct: 758 EADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALNESTFPPSRTVQLNMFLDAGFL 817
Query: 697 PQT--------EPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAE------- 741
P + + G+ +L LK I++ +S+ C E
Sbjct: 818 PSNLAFVRRLFKENFLGVFVQKLEALK-----IKIPKSTYVYCIPDPYGVLEEGQIHLDL 872
Query: 742 -------TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT 794
T L I+ V++A+ P P D++ AV P L +L + +FP KG+ P
Sbjct: 873 GDSWEDGTTDLDGID--VLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFPTKGEVPLA 930
Query: 795 NEASGSDLDGDLYYVTWDENLIPP 818
+ SG D DGD +V WD+ ++ P
Sbjct: 931 SLLSGGDYDGDEVWVCWDQEIVKP 954
>gi|297832164|ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
gi|297329804|gb|EFH60223.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
Length = 893
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 137/574 (23%), Positives = 228/574 (39%), Gaps = 119/574 (20%)
Query: 453 FKRVKSILSDGFNLCGRRYSFLAF-----SSNQLRDHSAW---FFSKVGETSVLDIKN-- 502
+ + K I +G + RRY F + + R+ + +F ++ T+ D++N
Sbjct: 263 YSKHKEIAKNGIMVGLRRYQIFVFKDGGKAEKKKRNSTKQVKCYFIRMDSTASSDMENPY 322
Query: 503 -------------WMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDIK--- 545
+M T + A Y AR L S T +E+ T + ++ DI
Sbjct: 323 ILAGMSIHEARMHFMHVHTLPSPANYMARFSLILSKT-KKLEVDMTGITVKQIDDIHCHD 381
Query: 546 --------RNG--YVFSDGIGKITPDLA-MEVAQILKLD------------GSPPPSAYQ 582
+NG + SDG G I+ DLA M I K G PP Q
Sbjct: 382 QSNNDVLDKNGKPRIHSDGTGYISEDLARMCPVNIFKGKNIKSDIIQGKTCGQEPPLLIQ 441
Query: 583 IRY----AGYKGVVAC---WPAKDDGIRMSLRGSMKKFK-------SCHTSLEICSWTRF 628
IR + KG+ P + +R S+ +K +K S SLE+ + +
Sbjct: 442 IRMFNDGSAVKGIFLLNKNLPPRTVQVRPSM---IKVYKDKNLSNFSTFNSLEVVTTSNP 498
Query: 629 -QPGFLNRQIITLLS---------------TLNVSDEIFWTVQASMASKLNLMLVASDVA 672
+ L++ ++ LLS TL + +F+ ++A+ + ++A ++
Sbjct: 499 PKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKNTVFFKIRAAGKGSMRSHMMALFLS 558
Query: 673 FEVLTASCAEQGN----TAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSL 728
V SC N A M+ AG P EP+L+ L+ L K+ ++ +
Sbjct: 559 LFVF-CSCTSLRNMDDKNALQMIMAGI-PLDEPYLKHHLSLLLKIKKDD---LKAGRLPI 613
Query: 729 ENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLV 784
+ + G+ T +L+ V + NP L GD+ IL+A L +
Sbjct: 614 DESYYLMGT-VDPTGELK--EDEVCVILNPGLHFGDIHILQATYVKTLEQYVGNSKYAVF 670
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP------PSKKSCPPMEC----TPAEAK 834
FPQKG R +E +G D DGD+Y+++ + L+ P S PP + P+E
Sbjct: 671 FPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPPSKIYTGRKPSELS 730
Query: 835 PLTCHVNHQNL----GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM 890
P N+ G + + A S G D L A+D+PKTG V +
Sbjct: 731 PEQLEEELFNMFLKTGFSPSNVIGQAADSWLGIMDR---FLTLGDENAIDAPKTGTEVNL 787
Query: 891 PSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
P +K +P +M E + +KS ILG ++ +
Sbjct: 788 PFDVKADVFPHYM--ERNKIFKSISILGLIFDTV 819
>gi|326483110|gb|EGE07120.1| RNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1286
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 149/367 (40%), Gaps = 62/367 (16%)
Query: 505 GEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAM 564
G T + +K R+ L S T AT+ + P E ++ D R + SDG ++ L
Sbjct: 585 GRNTHQEYSKLFTRIRLGLSRTTATITLRPEEFIYD--DDPRQEKM-SDGFAMMSRSLGR 641
Query: 565 EVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD------GIR---------MSLRGS 609
+A + L S P+ +Q R AG KGV AKDD G+R + + S
Sbjct: 642 AIADSICL--SKVPTCFQGRIAGAKGVWVV--AKDDQDIHVKGLRHFETERGYWLVINAS 697
Query: 610 MKKFKS--CHTSL---------EICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQAS 657
K + C TSL ++ S+++ QP LN Q + +L + E ++
Sbjct: 698 QLKVQPPPCDTSLMFDKHQLTFDVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLIPK 757
Query: 658 MASKL-NLMLVASDVAFEVLTASCAEQGNTAA--------------------IMLSAGFK 696
A K + L+ + A + G A+ + L AGF
Sbjct: 758 EADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALNESTFPPSRTVQLNMFLDAGFL 817
Query: 697 PQTEPHLQGMLTYE-LGE----LKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF 751
P ++ + LG+ L+ + I S + S T L I+
Sbjct: 818 PSNLAFVRRLFKENFLGDFVQKLEALKIKIPKSTYKAQIHLDLGDSWEDGTTDLDGID-- 875
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++A+ P P D++ AV P L +L + +FP KG+ P + SG D DGD +V W
Sbjct: 876 VLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFPTKGEVPLASLLSGGDYDGDEVWVCW 935
Query: 812 DENLIPP 818
D+ ++ P
Sbjct: 936 DQEIVKP 942
>gi|358369575|dbj|GAA86189.1| RNA-directed RNA polymerase [Aspergillus kawachii IFO 4308]
Length = 1306
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 155/393 (39%), Gaps = 78/393 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R L S T+ATV + P +V LPD+ + V +DG ++ LA ++ L L
Sbjct: 593 KLFQRFSLALSKTYATVVLHPRQV-LPLPDVSKP--VMNDGCALMSRSLANQICDSLGLT 649
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAK-----DDGIRMSLRGSMKKFKSC-----------H 617
G P SA+Q R AG KG+ + DD + + + S K +
Sbjct: 650 GYTP-SAFQGRIAGAKGLWMVDKHRSHVTADDDVWIQISDSQLKIRPHPHEWDGSVDDEK 708
Query: 618 TSLEICSWTRFQPGFLNRQIITLLSTLNVSDEI------------------FWTVQASMA 659
+ E+ W++ P Q I LL+ L+ I F V S +
Sbjct: 709 LTFEVVKWSK--PLHPVNQTIQLLNILDHGGHIRGHLADLTRLGIQSLYQEFADVLESDS 766
Query: 660 SKLNLMLV-----ASDVAFEVLTASCAE----QGNTAAIML---SAGFKPQTEPHLQGML 707
+ L LV + D F ++ N A ++ AGF P++ L+ L
Sbjct: 767 AVLCRSLVQKIRPSGDDGFGRVSQRTWRFENWMSNDAEFIIRLTEAGFCPRSFHFLRKRL 826
Query: 708 TYELGELKEC---QCFIQVSESSLENCFSKHGSRFAETKKLQVINGF------------- 751
L EL + + I+V S+ C + + K+ +V GF
Sbjct: 827 GKCLRELLKRHVDELRIEVPLSTYAFCIA---DPYGVLKEDEVHFGFSNVWRDGKGQFED 883
Query: 752 -------VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDG 804
V++ + P P D++ AV + EL H D +VFP G+ P + SG D DG
Sbjct: 884 ILLDGIDVLVGRLPAHLPSDIQRRTAVWKQELRHFKDVIVFPSVGNIPLAHMLSGGDYDG 943
Query: 805 DLYYVTWDENLIPPSKKSCPPMECTPAEAKPLT 837
D ++ WD+N++ S P P E LT
Sbjct: 944 DTPWICWDQNIVRNFYNSGLPDTEFPPEHYGLT 976
>gi|121713002|ref|XP_001274112.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
gi|119402265|gb|EAW12686.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
Length = 1313
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++ + P P D++ AV +PEL H D +VFP GD P + SG D DGD+ ++ W
Sbjct: 900 VLVGRLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTAGDIPLAHMLSGGDYDGDMPWICW 959
Query: 812 DENLIPPSKKSCPPMECTPAEAKPLTCH 839
D+N++ + S P E P E LT H
Sbjct: 960 DQNMVQDFRNSGLPTEEFPPEHFGLTKH 987
>gi|407919378|gb|EKG12628.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1485
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 749 NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
N V++A+NP LR D++ + + L HL D +VFP +G P + G D DGD ++
Sbjct: 981 NRNVLVARNPALRASDIQKVRSTFNLRLGHLKDVVVFPTRGTFPLAGKLQGGDYDGDTFW 1040
Query: 809 VTWDENLIPPSKKSCPPMECTPAEAKPLTCH--VNHQNLGQICNAHVV 854
+ W+ ++ P K + PP+E + P C V+ + L +C +
Sbjct: 1041 ICWEPEMVEPFKNAPPPLE----DPDPKKCQIKVDKRKLADMCKGDSI 1084
>gi|425774605|gb|EKV12907.1| RNA-directed RNA polymerase, putative [Penicillium digitatum Pd1]
gi|425776464|gb|EKV14681.1| RNA-directed RNA polymerase, putative [Penicillium digitatum PHI26]
Length = 1445
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 151/389 (38%), Gaps = 67/389 (17%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R+ L S T ATV++ PT+V D R V +DG I+ LA ++ L +
Sbjct: 751 KLFQRISLGLSKTFATVKLKPTQVLRLRDDPTRT--VMNDGCALISRPLANQICDQLGIT 808
Query: 574 GSPPPSAYQIRYAGYKGV--VACWPA-----KDDGIRMSLRGSMKKFKSC---------- 616
+ P S +Q R AG KG+ V C + DD I + + S K
Sbjct: 809 AATP-SCFQGRIAGAKGLWMVDCHQSSITTLNDDNIWVQISDSQLKIHPHPQEWVDPVDD 867
Query: 617 -HTSLEICSWTR-FQPGFLNRQIITLLS-TLNVSDEIFW----TVQASMASKLNLMLVAS 669
+ E+ +W + P LN Q++ +L NV + I VQ+ L ++ S
Sbjct: 868 EKLTFEVVNWAKPLHPVDLNIQLLAILEYGGNVKEYIAKLTRDGVQSLYDDFLEVLRSNS 927
Query: 670 DVAFEVLTAS---CAEQGNTAAIMLS---------------AGFKPQT----EPHLQGML 707
V L E G A L AGF P+ L+ +
Sbjct: 928 PVGCRALLQKLRPSGEDGTGKARRLEQWVTSDAESIIRFSEAGFAPRDFFPLRMKLRKFI 987
Query: 708 TYELGELKECQCFIQVSESSLENC----------------FSKHGSRFAETKKLQVINGF 751
T+ L E + IQV S+ C FS + + +++G
Sbjct: 988 TWLLERHVE-ELKIQVPLSTYAYCIADPYGVLGPDEVHFGFSNNWRDPQGQFEDNLLDGV 1046
Query: 752 -VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVT 810
V++ + P P D++ +AV + EL H D +VFP G+ P SG D DGD ++
Sbjct: 1047 DVLVGRLPAHLPSDIQRRKAVWKTELRHFKDVIVFPTTGNFPLAGMLSGGDYDGDTPWIC 1106
Query: 811 WDENLIPPSKKSCPPMECTPAEAKPLTCH 839
WD ++ S P P E LT H
Sbjct: 1107 WDPIIVERFHNSPMPSHEYPVEHYGLTKH 1135
>gi|242216941|ref|XP_002474274.1| predicted protein [Postia placenta Mad-698-R]
gi|220726566|gb|EED80511.1| predicted protein [Postia placenta Mad-698-R]
Length = 998
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGE----FTAKNIAKY 515
+ DG L Y+FL F+ +++ FF + SV +++G ++A KY
Sbjct: 71 MRDGLLLRDEHYTFLGFTDGHVKEGKLVFFREDASWSVARFMDYIGNLRDVYSAYGYGKY 130
Query: 516 AARMGLCFSSTHATVEIPPTEVDHELPDIK-RNGYVFSDGIGKITPDLAMEVAQILKLDG 574
AAR+ L FSST ++++P + +PD + R+G + SDG G I AM+V + +
Sbjct: 131 AARLALSFSSTVESLDVPFVKA-ARIPDRRARDGSLHSDGCGLIRHSFAMDVCRNNGI-- 187
Query: 575 SPPPSAYQIRYAGYKGVVACWP 596
+P +QIR G KG++ +P
Sbjct: 188 APDTCVFQIRRGGIKGLLVRYP 209
>gi|119183445|ref|XP_001242762.1| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
gi|392865671|gb|EAS31478.2| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
Length = 1372
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 142/364 (39%), Gaps = 65/364 (17%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEV-------DHELPD---IKRNGYVFSDGIGKITPDLA 563
K R+ L S T TV I P + D L D +K + SDG ++ LA
Sbjct: 656 KIFQRLALGLSRTIPTVVIRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLA 715
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR------MSLRGSMKKFK--- 614
+ L L PS +Q R AG KG+ W I + + GS K K
Sbjct: 716 NRIKDCLGLK-EENPSCFQGRIAGAKGI---WMVDGRNIAFKGEECIQISGSQLKTKPHP 771
Query: 615 -SCHTSL-------EICSWTR-FQPGFLNRQIITLLSTLNV-SDEIFWTVQASMASKLNL 664
C L E+ SW++ +P LN Q++ +L V +D + V+ M +
Sbjct: 772 SDCRMMLDDHQLTFEVVSWSKELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQE 831
Query: 665 M--LVASDVAFEVLTASCA---------------EQGNTAAIMLSAGFKPQTEPHLQGML 707
++ +++A E A ++L +GF P +L L
Sbjct: 832 FKGIITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRL 891
Query: 708 TYELGEL--KECQCFIQVSESSLENCFSKHGSRFAE------------TKKLQVINGF-V 752
L + + I++ ES+ C + + AE ++ ++G V
Sbjct: 892 KTFLDDYCARLDSLKIRIPESTYAYCIADPYNVLAEDEVHLGFSRPWDSEGYTDLDGMDV 951
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++ +NP P D++ AV + EL H D +VFP G P + SG D DGD + WD
Sbjct: 952 LVGRNPAHLPSDIQKRRAVFKKELRHFKDVIVFPTAGALPLASMLSGGDYDGDQVWTCWD 1011
Query: 813 ENLI 816
L+
Sbjct: 1012 PQLV 1015
>gi|343429506|emb|CBQ73079.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1287
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
V G V++ ++PCL P D+R + AV RPEL D +VF KG RP + SG D DGD
Sbjct: 808 HVPEGQVLVTRHPCLLPTDIRKVRAVVRPELSLYKDVVVFSTKGKRPLASLLSGGDYDGD 867
Query: 806 LYYVTWDENLIPP 818
L V W+ L+ P
Sbjct: 868 LIRVFWEPKLVEP 880
>gi|320034225|gb|EFW16170.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1289
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 142/364 (39%), Gaps = 65/364 (17%)
Query: 514 KYAARMGLCFSSTHATVE-------IPPTEVDHELPD---IKRNGYVFSDGIGKITPDLA 563
K R+ L S T TV I P +D L D +K + SDG ++ LA
Sbjct: 573 KIFQRLALGLSRTIPTVVVRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLA 632
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR------MSLRGSMKKFK--- 614
+ L L P S +Q R AG KG+ W I + + GS K K
Sbjct: 633 NRIKDCLGLKEENP-SCFQGRIAGAKGI---WMVDGRNIAFKGEECIQISGSQLKTKPHP 688
Query: 615 -SCHTSL-------EICSWTR-FQPGFLNRQIITLLSTLNV-SDEIFWTVQASMASKLNL 664
C L E+ SW+R +P LN Q++ +L V +D + V+ M +
Sbjct: 689 SDCRMMLDDHQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQE 748
Query: 665 M--LVASDVAFEVLTASCA---------------EQGNTAAIMLSAGFKPQTEPHLQGML 707
++ +++A E A ++L +GF P +L L
Sbjct: 749 FKDIITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRL 808
Query: 708 TYELGEL--KECQCFIQVSESSLENCFSKHGSRFAE------------TKKLQVINGF-V 752
L + + I++ ES+ C + + AE ++ ++G V
Sbjct: 809 KTFLDDYCARLDSLKIRIPESTYAYCIADPYNVLAEDEVHLGFSKPWDSEGYTDLDGMDV 868
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++ +NP P D++ AV + EL + D +VFP G P + SG D DGD + WD
Sbjct: 869 LVGRNPAHLPSDIQKRRAVFKKELRYFKDVIVFPTAGALPLASMLSGGDYDGDQVWTCWD 928
Query: 813 ENLI 816
L+
Sbjct: 929 PQLV 932
>gi|303319845|ref|XP_003069922.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109608|gb|EER27777.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1372
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 142/364 (39%), Gaps = 65/364 (17%)
Query: 514 KYAARMGLCFSSTHATVE-------IPPTEVDHELPD---IKRNGYVFSDGIGKITPDLA 563
K R+ L S T TV I P +D L D +K + SDG ++ LA
Sbjct: 656 KIFQRLALGLSRTIPTVVVRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLA 715
Query: 564 MEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIR------MSLRGSMKKFK--- 614
+ L L P S +Q R AG KG+ W I + + GS K K
Sbjct: 716 NRIKDCLGLKEENP-SCFQGRIAGAKGI---WMVDGRNIAFKGEECIQISGSQLKTKPHP 771
Query: 615 -SCHTSL-------EICSWTR-FQPGFLNRQIITLLSTLNV-SDEIFWTVQASMASKLNL 664
C L E+ SW+R +P LN Q++ +L V +D + V+ M +
Sbjct: 772 SDCRMMLDDHQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQE 831
Query: 665 M--LVASDVAFEVLTASCA---------------EQGNTAAIMLSAGFKPQTEPHLQGML 707
++ +++A E A ++L +GF P +L L
Sbjct: 832 FKDIITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRL 891
Query: 708 TYELGEL--KECQCFIQVSESSLENCFSKHGSRFAE------------TKKLQVINGF-V 752
L + + I++ ES+ C + + AE ++ ++G V
Sbjct: 892 KTFLDDYCARLDSLKIRIPESTYAYCIADPYNVLAEDEVHLGFSKPWDSEGYTDLDGMDV 951
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++ +NP P D++ AV + EL + D +VFP G P + SG D DGD + WD
Sbjct: 952 LVGRNPAHLPSDIQKRRAVFKKELRYFKDVIVFPTAGALPLASMLSGGDYDGDQVWTCWD 1011
Query: 813 ENLI 816
L+
Sbjct: 1012 PQLV 1015
>gi|238599737|ref|XP_002394960.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
gi|215464849|gb|EEB95890.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
Length = 346
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 133/313 (42%), Gaps = 62/313 (19%)
Query: 283 EEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQL---SDSFFDLLRCQPR 339
++P +P+ H + + +F + +++ GIL+ ++ S+ L + QP+
Sbjct: 51 DKPRLGIPLRK---LRHGFQSFDWPTVFQLESLLFHGILHTSEIDEISNRVLKLYKEQPK 107
Query: 340 EVIVTALKHIYS---YKRP---VFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLV 393
+ + L+ S Y P +E+L + N L G N + +
Sbjct: 108 DSVAALLRTFNSHIPYLTPGETAVGCFEELTSAAPSSLLNLPL--GQFNCYHVTFTPTRM 165
Query: 394 IT----PTKAYWFLES-KDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
IT PT+++ + K D F+RV F +E + +++ S F +
Sbjct: 166 ITEGPYPTQSHRIIRRYKGFEDHFIRVDFCEEDRTKYGDD----------REVDSIPFLK 215
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKV-----GETSVLDIKNW 503
RV +IL GF L GR + FLA+S + LR HS WF S+ G + I++
Sbjct: 216 G-----RVGNILKRGFPLGGRHFQFLAYSGSGLRSHSVWFMSEFHHPLEGLVNAAKIRDS 270
Query: 504 MGEFTAKNI---------------------AKYAARMGLCFSSTHATVEIPPTEVDHELP 542
+G+F I +KY AR+GL F++T +V I + D +P
Sbjct: 271 IGDFRDLRIEEYPEQERRFYQADQDLLRHPSKYGARLGLAFTATRPSVRIRRDQWD-IVP 329
Query: 543 DIKRN-GYVFSDG 554
DI+ + +F+DG
Sbjct: 330 DIEGDKSRLFTDG 342
>gi|110738636|dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 37/215 (17%)
Query: 763 GDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI-- 816
GD+ IL+A L + FPQKG R +E +G D DGD+Y+++ + L+
Sbjct: 2 GDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEN 61
Query: 817 -----------PPSKKSC--PPMECTP------AEAKPLTCHVNHQN-LGQICNAHVVHA 856
PPSK + P + +P LT + N +G ++ +
Sbjct: 62 FKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIM 121
Query: 857 DR---------SEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEE 907
DR E + + L + A+D+PK G V +P+ LKP +P +ME +
Sbjct: 122 DRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERD- 180
Query: 908 YQTYKSNKILGRLYRQIKGAYDENISVSSEVDINP 942
+ ++S ILG ++ +K E S SSE+ P
Sbjct: 181 -KKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLP 214
>gi|255956165|ref|XP_002568835.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590546|emb|CAP96738.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1430
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 110/455 (24%), Positives = 173/455 (38%), Gaps = 103/455 (22%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R+ L S T ATV++ PT+V D R V +DG ++ LA ++ L +
Sbjct: 753 KLFQRISLGLSKTFATVKLKPTQVLRLRDDPTRP--VMNDGCALMSRTLANQICDQLGIT 810
Query: 574 GSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSC----HTSLEICSWTR-F 628
+ P S +Q R AG KG+ W + ++ + +++ + E+ +W +
Sbjct: 811 TATP-SCFQGRIAGAKGL---WMIQISDSQLKIHPHPQEWVGPVDEEKLTFEVVNWAKQL 866
Query: 629 QPGFLNRQIITLLS-TLNVSDEIFW----TVQASMASKLNLMLVASDVAFEVLTAS---C 680
P LN Q++ +L NV + I VQ+ L ++ S V L
Sbjct: 867 HPVDLNIQLLAILEYGGNVKEYIAKLTRDGVQSLYDDFLEVLRSNSPVVCRALLQKLRPS 926
Query: 681 AEQGNTAAIMLS---------------AGFKP--------QTEPHLQGMLTYELGELKEC 717
E G A L AGF P + +L +L + ELK
Sbjct: 927 GEDGTGKARRLEQWVTNDAESIIHFSEAGFAPRDFFPLRMKIRQYLTWLLERNVEELK-- 984
Query: 718 QCFIQVSESSLENC----------------FSKHGSRFAETKKLQVINGF-VVIAKNPCL 760
IQV S+ C FS + + +++G V++ + P
Sbjct: 985 ---IQVPLSTYAYCIADPYGVLGPDEVHFGFSNNWRDPQGQFEDNLLDGVDVLVGRLPAH 1041
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSK 820
P D++ AV + EL H + +VFP G+ P SG D DGD ++ WD ++ +
Sbjct: 1042 LPSDIQRRRAVWKSELRHFKNVIVFPTTGEFPLAGMLSGGDYDGDTPWICWDPMIVERFQ 1101
Query: 821 KSCPPMECTPAEAKPLTCH---------------------VNHQNLGQICNAHVVHADRS 859
S P + AE LT H +N NLG+ H
Sbjct: 1102 NSPMPTDEYSAEHYGLTKHSVPMASLESTEDFLESVFDFNLNVSNLGRCTVEH------- 1154
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
E A+DE +VDSPK ++ + HL
Sbjct: 1155 EKLAYDE-----------SVDSPKAKELACLLGHL 1178
>gi|218187686|gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 147/354 (41%), Gaps = 65/354 (18%)
Query: 604 MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFW-TVQASMA 659
+S R + K + S EI S + R + +R +ITLL V +E F +Q+++
Sbjct: 666 VSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIE 725
Query: 660 SKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE------ 713
N D + + E +A ++LS P E +LQ L + +
Sbjct: 726 GAENACYDYEDALRIAFSYADMEDSMSARMILSG--IPLEESYLQHRLDFMAQQERKGIK 783
Query: 714 -----LKECQCFIQVSESSL-----ENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPG 763
+ EC + ++ + E C +F+ G V++ K+P L G
Sbjct: 784 QGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFS---------GDVLVYKHPGLHFG 834
Query: 764 DVRILEA-----VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
D+ +L+A +++ + + ++FP G R +E + SD DGD+Y+V+ + L+
Sbjct: 835 DIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLEH 894
Query: 819 SKKSCP--------------PMECTPAEAKPLTCHVNHQN-------LGQICNAHVVHAD 857
K S P P +C ++ + L H + LG ++ + + D
Sbjct: 895 FKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMD 954
Query: 858 RSEYGAFDE--------NCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFM 903
R + DE I L L A+D+PKTG V +PS L K+YP FM
Sbjct: 955 RLLTDSLDEIEKKLIEEKMIKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFM 1008
>gi|330915603|ref|XP_003297095.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
gi|311330417|gb|EFQ94809.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
Length = 1415
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
LG L+ + +Q S S ++ + K L + + V++A+ P R D++ +
Sbjct: 966 LGVLEPGEIQVQFSSSFADDT--------TDEKYLCLRDMEVLVARQPACRRSDIQKVRT 1017
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC-T 829
V R EL HL D +VFP KG P + G D DGD++++ W+ L+ P + P++
Sbjct: 1018 VIRSELSHLVDVVVFPSKGRYPLAGKLQGGDYDGDIFWICWEPQLVQPFLNAPAPVQSPE 1077
Query: 830 PA--EAKPLTCHV 840
PA E K +T V
Sbjct: 1078 PARYEIKKMTAKV 1090
>gi|384496670|gb|EIE87161.1| hypothetical protein RO3G_11872 [Rhizopus delemar RA 99-880]
Length = 1225
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
+G L+ + ++Q+S ++ K G R +I G VV+A+NPC DV+ ++A
Sbjct: 750 IGILEPDEVYLQLSTRKVDE---KTGIRAG------LILGDVVVARNPCGLKSDVQKVKA 800
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTP 830
+D P L D ++F KG+ ++ G D DGDL + WD+ ++ P S E
Sbjct: 801 IDCPALRMYTDLIIFSTKGESSLASKLGGGDYDGDLVFCCWDQRIVEPFTASPVVKELER 860
Query: 831 -AEA-------------------KPLTCH-----VNHQNLGQICNAHVVHADRSEYGAFD 865
A+A K L H + LG N V A++S D
Sbjct: 861 VAQAFEKDKTTVGQQIGSFADTEKALQSHFIKAQMPDGTLGLYENWRTVLAEKSSLD--D 918
Query: 866 ENCILLAKLAATAVDSPKTGKIVTMPSHLKPK 897
+ LA++ A VD+PK G + + ++ + +
Sbjct: 919 PDVSYLAQMCARLVDAPKQGLCLKLSAYQRDR 950
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 43/262 (16%)
Query: 455 RVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGE----TSVLDIKNW---MGEF 507
++K + F L R + FL ++D++ FF+ G S+ + +W + E
Sbjct: 369 KLKDYILKPFLLMQRVFRFLF-----IKDNALIFFATEGTDLEPISIQQVIDWHMPIIEN 423
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEVDH------ELPDIKRNGYVFSDGIGKITPD 561
+++KYA+RM L +SS+ T++ P+E+++ + K +DG G I+
Sbjct: 424 WGMSMSKYASRMSLGYSSSIPTIQFEPSEIEYIDDIYSTISTTKDASACMTDGCGIISCA 483
Query: 562 LAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD--DGIRMSLRGSMKKFKSC--- 616
E+ D P A Q R AG KGV P D G + +R S KFK+
Sbjct: 484 AMREIMGCQATDRL--PCAIQGRIAGAKGVWIIAPDLDFNSGKYIKIRKSQDKFKTGLPQ 541
Query: 617 --------HTSLE-----ICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLN 663
H + + IC + P LN Q I +L+ V ++F + +L
Sbjct: 542 ADSHLDPHHYTFDLVKNSICIY----PSNLNIQFIQVLAAGGVPTKVFVEILGEYLHRL- 596
Query: 664 LMLVASDVAFEVLTASCAEQGN 685
+V + ++L A+ GN
Sbjct: 597 ATVVTKNQNVKILRDWVAKVGN 618
>gi|440493517|gb|ELQ75977.1| RNA-directed RNA polymerase QDE-1 [Trachipleistophora hominis]
Length = 1082
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 451 GVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD----IKNWMGE 506
V + ++ I+S+G + R Y F+A SS+QLR +SAWF S + +VL ++NWMG
Sbjct: 873 NVMEYIREIMSNGITI-DRPYYFVATSSSQLRSNSAWFISPYRKGNVLVGSDYVRNWMGV 931
Query: 507 FTAKNIAKYAARMGLCFSSTHATVEI 532
NI KY R+GL SST + E+
Sbjct: 932 IECDNIGKYMIRVGLGLSSTFSMFEV 957
>gi|449296300|gb|EMC92320.1| hypothetical protein BAUCODRAFT_569676 [Baudoinia compniacensis
UAMH 10762]
Length = 1367
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
+++A+NPC+R D++ L AV L + D +VF +G R ++ SG D DGD+ +V W
Sbjct: 794 ILVARNPCIRNSDMQKLRAVSCAALAGIFDVIVFSTQGPRSLASKLSGGDYDGDIAWVCW 853
Query: 812 DENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCI-- 869
D L+ P K + P + T + K ++ LG++ + + DEN +
Sbjct: 854 DPRLVLPFKNAPAPWKLT--DIKNFGIVKDNTKLGEVLAIISSNGEVDASLTLDENAVRR 911
Query: 870 LLAKLAATAVDSPKTGKIVTMPSHL 894
L + A+ ++S G + + + L
Sbjct: 912 WLHRGIASRMNSSLLGTVTNLHAKL 936
>gi|242053113|ref|XP_002455702.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
gi|241927677|gb|EES00822.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
Length = 108
Score = 64.7 bits (156), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 834 KPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH 893
K ++ + LG I H++HAD + A C+ LA L + AVD KTG M
Sbjct: 22 KHFDSYMTNDTLGVISTVHLIHADHNPLNAHTPKCLQLAALHSMAVDFAKTGPPAEMSLT 81
Query: 894 LKPKKYPDFMEIEEYQTYKSNKILGRL 920
L+P+++PDFME E Y SN +L +L
Sbjct: 82 LRPREFPDFMEQWERPMYVSNNVLDKL 108
>gi|396489578|ref|XP_003843139.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
gi|312219717|emb|CBX99660.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
Length = 1435
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 104/476 (21%), Positives = 172/476 (36%), Gaps = 125/476 (26%)
Query: 431 SYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFS 490
++YV PI K N+ + KRV ++G ++ S N++
Sbjct: 637 AFYVEPIQK---RNTGRKADDADKRVVLFATEGLDITK------PMSVNEM--------- 678
Query: 491 KVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNG-- 548
+ E DI W +N+ K +R+ L S T T+ P+++ + DI+ +G
Sbjct: 679 -LNEFLDFDINQW------QNLYKAYSRIALGLSRTIPTLVFKPSQI-RLVKDIRSDGTP 730
Query: 549 -------------------YVFSDGIGKITPDLAMEVAQIL-KLDGS--PPPSAYQIRYA 586
V +DG +I+ A + ++ + GS P PSA+Q R
Sbjct: 731 EANEFNDEGLDWDEKCSQPQVMNDGCARISVGAARIIWEMYCRATGSDEPLPSAFQGRIR 790
Query: 587 GYKGVVAC--------------W--------------PAKDDGIRMSLRGSMKKFKSCHT 618
G KG+ W K+D S R + K H
Sbjct: 791 GAKGMWMVSAEAHTRDEEHNDIWIEISDSQSKYEPHEADKNDATFNSHRLTFNYVKHSHV 850
Query: 619 SLEICSWTRFQPGFLNRQIIT------LLSTLNVSDEIFWTVQASMASKLNLMLVASDVA 672
+ F P ++R + ++ LNV + + N + S
Sbjct: 851 NGSTDLHISFIPILVDRGVKRDVIADFIIKHLNVERAQLLDMLSEPVKLHNWVTKQSSAT 910
Query: 673 FEVLTASCA---EQGNTAAIMLSAGFKPQTEPHLQGML---------------------- 707
V+ A Q ++L AGF PQ P L +L
Sbjct: 911 SGVIPWEAALPVSQSEKVKLLLRAGFTPQDSPFLAKVLINLIRQRQSVMEQKLRAPLGSA 970
Query: 708 TYELG------ELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF-VVIAKNPCL 760
T+ LG L+ Q I S ++ FS+ R ++G V+IA+ P
Sbjct: 971 TFLLGLADPEGVLEPGQVHISFSLPFVDE-FSRQTYRH--------LDGLEVLIARQPAC 1021
Query: 761 RPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
R D++ + V +L HL D +VFP +G P + G D DGD+++ W+ +L+
Sbjct: 1022 RRSDIQKVRVVTYSKLAHLRDVIVFPTRGQYPLAGKLQGGDYDGDIFWTCWENDLV 1077
>gi|402074256|gb|EJT69785.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1442
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 159/387 (41%), Gaps = 78/387 (20%)
Query: 496 SVLDIKNWMGEFTAKNIAKYA---ARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVF 551
SV + +W+ + Y +R+ L S T+ TV P ++ + D+ G V
Sbjct: 673 SVFRMLDWLLQLQKNKGQPYLKLFSRIALGLSPTYPTVTFEPHQIRAQAKDLLSPQGNVM 732
Query: 552 SDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGV-------------VACWPAK 598
+DG+G ++ +A ++ + L L P A Q R KG+ + +P++
Sbjct: 733 NDGVGLMSRSVAQKIQKTLGL--VTVPCAVQGRLGSAKGMWIIDVEDLSGEDWIETYPSQ 790
Query: 599 D---------DGIRMSLRGSMKKFKSCHTSLEIC----SWTRFQPGF-------LNRQII 638
D + +R + +S +L+ +R + F L +
Sbjct: 791 RKWECDIGDPDQRTLEVRSHASELRSARLNLQFLPVLEDRSRDKDAFRTAVGDLLGENLQ 850
Query: 639 TLLSTLNVS-----DEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSA 693
T L L + W + S S + + V F L S + +ML
Sbjct: 851 TELGGLRAALNRPIQHRQWVHENS--SNRDTRVRHGQVPF--LGGSPDKDEELMNMMLDH 906
Query: 694 GFKPQTEPHLQGMLTYELGELKECQCF-----IQVSESS----------------LENCF 732
GF P+ + +LQ L + L + K+C+ I V +S+ + CF
Sbjct: 907 GFDPKKQKYLQD-LAWVL-QKKKCETLKEKLNITVGKSAYAYMVVDFGGHLEPDEVHMCF 964
Query: 733 SK--HGSRFAETKKLQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKG 789
S FA+T +++G +++A++P D++ ++AV +P L L D +VFP+KG
Sbjct: 965 SSKFQVDDFADT----LLDGIELLVARSPAHYISDIQKVKAVFKPALKDLKDVIVFPRKG 1020
Query: 790 DRPHTNEASGSDLDGDLYYVTWDENLI 816
++ SG D DGD +V WD+ ++
Sbjct: 1021 RVALADKLSGGDYDGDKAWVCWDQAIV 1047
>gi|170091852|ref|XP_001877148.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648641|gb|EDR12884.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1193
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 114/307 (37%), Gaps = 99/307 (32%)
Query: 686 TAAIMLSAGFKPQTEPHLQGML-------------TYE---------------LGELKEC 717
T ++ AGF PQT P L+ L Y LG LK
Sbjct: 672 TVMYLIDAGFTPQTCPVLRSKLEKIVKSSVKNYIKAYRIDVPMSASAFLVPDILGVLKPG 731
Query: 718 QCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRIL--------- 768
+ F + S +L R + + ++ G V+I ++PC P D++ +
Sbjct: 732 EIFYKSSRRNL---------RQTDGTETDIMLGDVLITRHPCKLPTDIQKVRASSQFMFV 782
Query: 769 --------EAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---- 816
+AVDRPELHHL D +V P GDR + SG D DGD +T L+
Sbjct: 783 KHLYSPQWKAVDRPELHHLTDVIVLPTTGDRRAADLLSGGDYDGDKGLITNQPELVIPFI 842
Query: 817 --------PPS---------KKSCPP-MECTPAEAKPLTCHVNHQN-LGQICNAHVVHAD 857
PPS ++ P +E T + H Q LG I + VV
Sbjct: 843 NAPLHFSEPPSNMQKYFVRENEAVPAFLERTSVLSDDAKIHERQQYLLGAIRDTSVV--- 899
Query: 858 RSEYGAFDENCIL-----------LAKLAATAVDSPKTGKIVTMPSHLK------PKKYP 900
+Y F E I LA + +D KTG V +P LK K+ P
Sbjct: 900 -GKYSNFHEAAIYTLGYTHPETIRLAYMFCMTLDGAKTGMTV-LPQVLKDDTRKYQKRPP 957
Query: 901 DFMEIEE 907
+ E EE
Sbjct: 958 TWKETEE 964
>gi|169598368|ref|XP_001792607.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
gi|111069078|gb|EAT90198.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
Length = 1428
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 76/194 (39%), Gaps = 38/194 (19%)
Query: 687 AAIMLSAGFKPQTEPHLQ----------------------GMLTY------ELGELKECQ 718
A ++L GF+P P L G TY LG LK +
Sbjct: 924 AKLLLRTGFQPYQSPFLARTLKRFVQQRQLWMEEKLRAPLGRATYLIGLADPLGILKPGE 983
Query: 719 CFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHH 778
+Q S+ L+ + + VVI + P R D++ + AV P+L H
Sbjct: 984 VHVQFSKPFLDE--------YGRNTYRNLAGEEVVITRQPACRRSDMQKMRAVSHPQLSH 1035
Query: 779 LCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC 838
L D +VF +G P + G D DGD ++V W+ +L+ P + P+ E +
Sbjct: 1036 LVDVVVFSSRGIYPAAGKLQGGDYDGDTFWVCWEPDLVVPFLNAPAPLNDL--EPQKYGI 1093
Query: 839 HVNHQNLGQICNAH 852
+ + L I N H
Sbjct: 1094 KKDTRKLTDIMNPH 1107
>gi|302653254|ref|XP_003018456.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
gi|291182103|gb|EFE37811.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
Length = 1082
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 152/381 (39%), Gaps = 85/381 (22%)
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVA 567
T + +K R+ L S T AT+ + P E ++ D R + SDG ++ L +A
Sbjct: 373 THQEYSKLFTRIRLGLSRTTATITLRPEEFIYD--DDPRQEKM-SDGFAMMSRSLGKAIA 429
Query: 568 QILKLDGSPPPSAYQIRYAGYKGVVACWPAKDD------GIR---------MSLRGSMKK 612
L L S P+ +Q R AG KG+ AKDD G+R + + S K
Sbjct: 430 DSLCL--SKVPTIFQGRIAGAKGIWLV--AKDDHDIHVKGLRHFETERGYWLVINASQLK 485
Query: 613 FKS--CHTSL---------EICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
+ C TSL ++ S+++ QP LN Q + +L V+ E ++ A
Sbjct: 486 VQPPPCDTSLTFDEHQLTFDVSSYSQPPQPVHLNIQFLMVLQDRGVNKEYILSLIPDEAD 545
Query: 661 KL--NLMLV---------------ASDVAFEVLT--ASCAEQGNTAAI--MLSAGFKPQT 699
K +LV D + ++L S +TA + +L AGF P
Sbjct: 546 KFYSEFLLVQNGDSVACRAWVRKNGGDASSQILALNESTFPTNHTAQLNGLLDAGFSPSN 605
Query: 700 EPHLQ--------GMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAE---------- 741
++ G +L LK I++ S+ C E
Sbjct: 606 LAFVRRLFKENSLGGFVQKLEALK-----IKIPHSTYVYCIPDPYGVLEEGQIHLDLGDS 660
Query: 742 ----TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
T L I+ V++A+ P P D++ AV P L +L +F KGD P +
Sbjct: 661 WEDGTTDLDGID--VLVARAPAHLPSDIQKCRAVFHPALRYLKHVAIF-TKGDVPLASLL 717
Query: 798 SGSDLDGDLYYVTWDENLIPP 818
SG D DGD +V WD+ ++ P
Sbjct: 718 SGGDYDGDEVWVCWDQEIVKP 738
>gi|443894414|dbj|GAC71762.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1339
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
V G V++ ++PCL P D+R + AV R EL D +VF KG P + SG D DGD
Sbjct: 845 HVPEGDVLVTRHPCLLPTDIRKVRAVVRSELSRFQDVVVFSTKGHTPLASLLSGGDYDGD 904
Query: 806 LYYVTWDENLIPPSKKS 822
L V W+ L+ P K +
Sbjct: 905 LIRVFWEPRLVDPFKNA 921
>gi|159126570|gb|EDP51686.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 1318
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++ + P P D++ AV + EL H D +VFP GD P + SG D DGD ++ W
Sbjct: 902 VLVGRLPAHVPSDIQRRRAVWKTELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICW 961
Query: 812 DENLIPPSKKSCPPMECTPAEAKPLTCH 839
D+N++ + S P E P E LT H
Sbjct: 962 DQNIVQRFQNSDLPTEEYPPEHFGLTKH 989
Score = 40.4 bits (93), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R+ L S T+ATV + P ++ H L D+ N V +DG ++ LA + L +
Sbjct: 602 KLFQRISLGLSKTYATVTLKPWQILH-LRDVP-NRPVMNDGCALMSRPLANAICDQLGIT 659
Query: 574 GSPPPSAYQIRYAGYKGV 591
G+ P SA+Q R AG KG+
Sbjct: 660 GNTP-SAFQGRIAGAKGL 676
>gi|70997928|ref|XP_753696.1| RNA-directed RNA polymerase [Aspergillus fumigatus Af293]
gi|66851332|gb|EAL91658.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus Af293]
Length = 1318
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++ + P P D++ AV + EL H D +VFP GD P + SG D DGD ++ W
Sbjct: 902 VLVGRLPAHVPSDIQRRRAVWKTELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICW 961
Query: 812 DENLIPPSKKSCPPMECTPAEAKPLTCH 839
D+N++ + S P E P E LT H
Sbjct: 962 DQNIVQRFQNSDLPTEEYPPEHFGLTKH 989
Score = 40.4 bits (93), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLD 573
K R+ L S T+ATV + P ++ H L D+ N V +DG ++ LA + L +
Sbjct: 602 KLFQRISLGLSKTYATVTLKPWQILH-LRDVP-NRPVMNDGCALMSRPLANAICDQLGIT 659
Query: 574 GSPPPSAYQIRYAGYKGV 591
G+ P SA+Q R AG KG+
Sbjct: 660 GNTP-SAFQGRIAGAKGL 676
>gi|451845380|gb|EMD58693.1| hypothetical protein COCSADRAFT_194603 [Cochliobolus sativus
ND90Pr]
Length = 1215
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 132/327 (40%), Gaps = 67/327 (20%)
Query: 550 VFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAK----DDGIR-- 603
V S G K DL + + P PSA+Q R G KG+ K D +
Sbjct: 540 VMSVGAAKKIWDLYTKATGVT----DPLPSAFQGRIGGAKGIWVISAEKFTKDTDHLEPW 595
Query: 604 MSLRGSMKKFKS------CHTSLEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQA 656
+ + S KF+ H + E+ +++ P L+ I +L+ V+ E +
Sbjct: 596 IEINESQWKFQPPNDQSPYHRTFEVSNYSSTPSPSELHSSFIPILADRGVTKEAISDLML 655
Query: 657 SMASK--LNLMLVASDVA------------FEVLTASCAEQGNTAAI------MLSAGFK 696
K +NL+ V D ++ + G A++ +L +GF
Sbjct: 656 DSLEKERINLLNVLQDATKVHEWVYRNGANTKLREETHGRVGQPASLKEKALNLLESGFD 715
Query: 697 PQTEPHL-QGMLTYELGE--LKECQCFIQVSESS----------------LENCFS---- 733
P P+L Q + ++ + +E + + + +S+ ++ FS
Sbjct: 716 PLKFPYLAQNLESFIMSRQIFQEAKLRVLLPKSTFLYGVADPLGVLNPGEIQILFSWPFV 775
Query: 734 --KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDR 791
R+++ + L+V+ +A+ P R D++ + V PEL HL D VF KG
Sbjct: 776 DETTNERYSDLRDLEVL-----VARQPACRRSDIQKVRTVIHPELSHLVDVAVFSSKGPF 830
Query: 792 PHTNEASGSDLDGDLYYVTWDENLIPP 818
P + G D DGD++++ W++ L+ P
Sbjct: 831 PLAGKLQGGDYDGDIFWICWEDTLVQP 857
>gi|327354916|gb|EGE83773.1| hypothetical protein BDDG_06718 [Ajellomyces dermatitidis ATCC
18188]
Length = 1096
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 119/515 (23%), Positives = 201/515 (39%), Gaps = 125/515 (24%)
Query: 491 KVGETSVLDIK---NWMGEFTAKNIAK----YAARMGLCFSSTHATVEIPPTEV----DH 539
K G+ + + I NW KN K R+ L S T +TV + E+ D
Sbjct: 344 KSGQRTSMSIDALINWHMPRAEKNNQKSDLKLFQRLQLGLSRTLSTVVLRRDEIVYLKDP 403
Query: 540 ELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD 599
P V +DG ++ L ME+A L L+ P + +Q R +G KGV +D
Sbjct: 404 PPP-------VMNDGCALMSRSLGMEIACTLGLETVP--AIFQGRISGAKGVWMV--DRD 452
Query: 600 DGI------RMSLRGSMKKFK-------------SCHTSLEICSWTR------------- 627
D R L+ + + K + E+ W+R
Sbjct: 453 DSRFRVGDRRFGLQITESQLKIHPAPPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLN 512
Query: 628 --FQPGFLNRQIITLLSTLNVS--DEIFWTVQA----SMASKLNLMLVASDVAFEVLTAS 679
G N I +L+ S D+ T++ + S L M +D +++ T
Sbjct: 513 ILQHGGIRNDHIKSLIKQEMSSFYDDFLETLRVPNGVACRSWLQKMKRITDESYKRQTKR 572
Query: 680 CA-----EQGNTAAIMLSAGFKPQTEPHL----QGMLTYELGELKECQCFIQVSESSLEN 730
+ + A ++L AGF P P+L + +L L LK + ++VS+S+
Sbjct: 573 TSNYFPPQYAEQAVLLLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLK--VRVSQSTFAY 630
Query: 731 CFS-------------------KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
C + +HGS E + ++ +A+ P D++ +V
Sbjct: 631 CIADPFGVLKPDEVHLGFSSAWEHGSVGTELHGIDIL-----LARLPAHLSTDIQKRRSV 685
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPA 831
+ L H D +VFP GD P + SG D DGD +V WD ++ K + + P+
Sbjct: 686 YKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTEFDPKTVPS 745
Query: 832 E--------AKPLTCHVNHQNLGQICNAHVVHADRSEYGA---------FDENCI----- 869
E + ++ +V+ + + NA + S+ G + +N I
Sbjct: 746 EESLGLRDHSTRISEYVSTEKF--LANAFKFNLKSSKLGPCTVEHETFCYHQNNINSSLG 803
Query: 870 -LLAKLAATAVDSPKTGKIVTMPS--HLKPKKYPD 901
LA L + VDS K+G+ +T + +L+P KYP+
Sbjct: 804 VKLAWLLSYLVDSRKSGRELTDDAWKNLRP-KYPN 837
>gi|375281950|gb|AFA45121.1| RNA-directed RNA polymerase 2 [Plenodomus tracheiphilus]
Length = 1382
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 26/183 (14%)
Query: 690 MLSAGFKPQTEPHLQ----------------------GMLTYELGELKECQCFIQVSESS 727
+L AGF PQ P L G T+ LG L + + ++ E
Sbjct: 883 LLRAGFTPQDSPFLARGLMQLIRQRQSVMEQKLRAPLGSATFLLG-LADPENVLRPGEVH 941
Query: 728 LENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
+ N S F + V+IA+ P R D++ + V P+L HL D +VF
Sbjct: 942 I-NFSSPFVDEFNRQTYRHLDGLEVLIARQPACRQSDIQKVRVVAHPQLAHLRDVVVFAT 1000
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQ 847
+G P + G D DGD +++ W+ L+ P K + PM P + +H+ + +
Sbjct: 1001 RGQYPLAGKLQGGDYDGDTFWICWESILVEPFKNAPAPM--NPPDPAAYGIKKDHRRVNE 1058
Query: 848 ICN 850
+ +
Sbjct: 1059 VMD 1061
>gi|429863502|gb|ELA37949.1| RNA-dependent RNA polymerase, partial [Colletotrichum
gloeosporioides Nara gc5]
Length = 989
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 161/370 (43%), Gaps = 83/370 (22%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN-GYVFSDGIGKITPDLAMEVAQILKL 572
K AR+ L S T A + ++ H D+ G V +DG+G+++ LA +V +L+L
Sbjct: 548 KLFARIQLGLSKTTAVAVLDQDQIRHMQKDVVSPIGQVMNDGVGRMSLSLARKVRDVLEL 607
Query: 573 DGSPPPSAYQIRYAGYKGVVACW--PAKDDG--IRMSLRGSMKKFKSC------HTSLEI 622
S PSA Q R KG+ W +D G I + S +K+ +C H +LEI
Sbjct: 608 --SDVPSAIQGRLGSAKGM---WIIDVEDTGSDIWIETWPSQRKW-NCDFLHQEHRTLEI 661
Query: 623 CSWT----------RFQPGFLNR----QIITLLSTLNV----SDEI-------------- 650
+ +F P +R QI+ + NV SDE+
Sbjct: 662 KDFVAEPRSANLNIQFLPILEDRAKDKQIMRKVVGDNVLRQLSDELEALRNAIKHPLQFR 721
Query: 651 FWTVQASMASKLNLMLVASDVAFEV-LTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY 709
W + S A K L S V F L S EQ + + GF+P + +Q M+ +
Sbjct: 722 KWVDENSTARKKRL--AHSSVPFLAGLPESKEEQ---LSYLGDGGFEPTKQKFMQDMM-W 775
Query: 710 ELGELKECQCFIQ---------------------VSESSLENCFSKHGSRF-AETKKLQV 747
+L + K+C+ + + E+ + CFS S F E +
Sbjct: 776 KL-QSKKCENVTKKMSIRIPNSAYLYMVVDFWGILEENEVHVCFS---STFRTEGFSDSM 831
Query: 748 INGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
++G V++A++P D++ ++AV +PEL L + +VFP KGD ++ SG D DG
Sbjct: 832 LHGCDVLVARSPAHLVSDIQRVKAVFKPELRALKNVIVFPAKGDVALADKLSGGDYDGGR 891
Query: 807 YYVTWDENLI 816
+V W+ ++
Sbjct: 892 AWVCWEPAIV 901
>gi|261202284|ref|XP_002628356.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590453|gb|EEQ73034.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1382
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 157/405 (38%), Gaps = 97/405 (23%)
Query: 491 KVGETSVLDIK---NWMGEFTAKNIAK----YAARMGLCFSSTHATVEIPPTEV----DH 539
K G+ + + I NW KN K R+ L S T +TV + E+ D
Sbjct: 630 KSGQRTSMSIDALINWHMPRAEKNNQKSDLKLFQRLQLGLSRTLSTVVLRRDEIVYLKDP 689
Query: 540 ELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD 599
P V +DG ++ L ME+A L L+ P + +Q R +G KGV +D
Sbjct: 690 PPP-------VMNDGCALMSRSLGMEIACTLGLETVP--AIFQGRISGAKGVWMV--DRD 738
Query: 600 D---GI---RMSLRGSMKKFK-------------SCHTSLEICSWTR-FQP--------- 630
D G+ R L+ + + K + E+ W+R P
Sbjct: 739 DSRFGVGDRRFGLQITESQLKIHPAPPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLN 798
Query: 631 -----GFLNRQIITLLSTLNVS--DEIFWTVQASMA----SKLNLMLVASDVAFEVLTAS 679
G N I +L+ S D+ T++ S L M +D +++ T
Sbjct: 799 ILQHGGIRNDHIKSLIKQEMSSFYDDFLETLRVPNGVACRSWLQKMKRITDESYKRQTKR 858
Query: 680 CA-----EQGNTAAIMLSAGFKPQTEPHL----QGMLTYELGELKECQCFIQVSESSLEN 730
+ + A ++L AGF P P+L + +L L LK + ++VS+S+
Sbjct: 859 TSNYFPPQYAEQAVLLLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLK--VRVSQSTFAY 916
Query: 731 CFS-------------------KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
C + +HGS E + ++ +A+ P D++ +V
Sbjct: 917 CIADPFGVLKPDEVHLGFSSAWEHGSVGTELHGIDIL-----LARLPAHLSTDIQKRRSV 971
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
+ L H D +VFP GD P + SG D DGD +V WD ++
Sbjct: 972 YKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIV 1016
>gi|453087546|gb|EMF15587.1| hypothetical protein SEPMUDRAFT_123844 [Mycosphaerella populorum
SO2202]
Length = 1406
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 12/139 (8%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
+++A+NP + P D++ + AV +P+L ++F +G RP N+ G D DGD ++ TW
Sbjct: 986 ILVARNPAMGPSDIQKVRAVFKPQLAKYAGNIIFSARGMRPLANKLQGGDYDGDAFWFTW 1045
Query: 812 DENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDENCILL 871
+ L P K + PA KP + LG + + + + + + C L
Sbjct: 1046 EPLLTEPFKNA-------PAPWKP----PDPDQLGITKDKYKLSDHVDDPNSEQQWCRYL 1094
Query: 872 AKLAATAVDSPKTGKIVTM 890
+ +AA +D+ G IVT+
Sbjct: 1095 STMAAKRMDANMLG-IVTL 1112
>gi|299747708|ref|XP_001837206.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298407644|gb|EAU84823.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1221
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
G L+E + + + SS N +G+ E + G V++ +NP P DV+ AV
Sbjct: 726 GVLEEGEIYFK---SSSRNLLRPNGTLTDE------LIGDVLVTRNPSKLPTDVQKWRAV 776
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPA 831
RPEL L D +V KG R + +G D DGD V WD ++ P K + P P
Sbjct: 777 HRPELRDLVDVVVLSTKGARRAADWLAGGDYDGDKVTVIWDPKIVDPFKTADPSHGDPPD 836
Query: 832 EA 833
+A
Sbjct: 837 DA 838
>gi|452985629|gb|EME85385.1| hypothetical protein MYCFIDRAFT_83458, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1527
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
+IA+NP + P D++ ++AV +PEL HL + ++ KG RP G D DGD +++ W+
Sbjct: 1095 LIARNPAMAPWDMQKVKAVFKPELAHLPNVVILSAKGKRPLAELLQGGDYDGDTFWLCWE 1154
Query: 813 ENLIPPSKKSCPPMECTP 830
L+ P + P + P
Sbjct: 1155 PRLVRPFRNHPAPWDPPP 1172
>gi|239612171|gb|EEQ89158.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1382
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 155/405 (38%), Gaps = 97/405 (23%)
Query: 491 KVGETSVLDIK---NWMGEFTAKNIAK----YAARMGLCFSSTHATVEIPPTEV----DH 539
K G+ + + I NW KN K R+ L S T +TV + E+ D
Sbjct: 630 KSGQRTSMSIDALINWHMPRAEKNNQKSDLKLFQRLQLGLSRTLSTVVLRRDEIVYLKDP 689
Query: 540 ELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD 599
P V +DG ++ L ME+A L L+ P + +Q R +G KGV +D
Sbjct: 690 PPP-------VMNDGCALMSRSLGMEIACTLGLETVP--AIFQGRISGAKGVWMV--DRD 738
Query: 600 DGI------RMSLRGSMKKFK-------------SCHTSLEICSWTR-FQP--------- 630
D R L+ + + K + E+ W+R P
Sbjct: 739 DSRFRVGDRRFGLQITESQLKIHPAPPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLN 798
Query: 631 -----GFLNRQIITLLSTLNVS--DEIFWTVQASMA----SKLNLMLVASDVAFEVLTAS 679
G N I +L+ S D+ T++ S L M +D +++ T
Sbjct: 799 ILQHGGIRNDHIKSLIKQEMSSFYDDFLETLRVPNGVACRSWLQKMKRITDESYKRQTKR 858
Query: 680 CA-----EQGNTAAIMLSAGFKPQTEPHL----QGMLTYELGELKECQCFIQVSESSLEN 730
+ + A ++L AGF P P+L + +L L LK + ++VS+S+
Sbjct: 859 TSNYFPPQYAEQAVLLLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLK--VRVSQSTFAY 916
Query: 731 CFS-------------------KHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
C + +HGS E + ++ +A+ P D++ +V
Sbjct: 917 CIADPFGVLKPDEVHLGFSSAWEHGSVGTELHGIDIL-----LARLPAHLSTDIQKRRSV 971
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
+ L H D +VFP GD P + SG D DGD +V WD ++
Sbjct: 972 YKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIV 1016
>gi|452002294|gb|EMD94752.1| hypothetical protein COCHEDRAFT_1201293 [Cochliobolus heterostrophus
C5]
Length = 1666
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 738 RFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEA 797
R+ E + L V+ +A++P R D++ + V PEL HL D VF KG P +
Sbjct: 1233 RYLELRDLNVL-----VARHPACRRSDIQKVRTVIHPELSHLVDVAVFSSKGSFPLAGKL 1287
Query: 798 SGSDLDGDLYYVTWDENLIPP 818
G D DGD++++ W+ L+ P
Sbjct: 1288 QGGDYDGDIFWICWENTLVQP 1308
>gi|393232270|gb|EJD39854.1| hypothetical protein AURDEDRAFT_171128 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 714 LKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDR 773
L E + F+ S+ L+N + + ++G V++ +NP P D++ ++AV +
Sbjct: 857 LGENEIFLSSSKVLLDNS----------GRTMNHLSGDVLVYRNPVRLPCDIQKVKAVYK 906
Query: 774 PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
PEL H D +VF KG R ++ +G D DGD V WD++++
Sbjct: 907 PELDHYRDVIVFSAKGTRSLASKLAGGDYDGDTAVVIWDQDIV 949
>gi|378728492|gb|EHY54951.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1308
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF-VVIAKNPCLRPGDVRILE 769
LG L+E Q FI + + H + V+ G V++A+NP D+++ +
Sbjct: 804 LGVLEEGQVFINFTSPVYDPVKGYHDT---------VLEGLDVLVARNPAYLASDMQLCQ 854
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPP 825
AV + ELH + ++FP KG +P + SG D DGD V WD +++ + PP
Sbjct: 855 AVYKHELHLYKNVILFPVKGKQPLASLLSGGDYDGDTVTVIWDPDIVRNFSNTSPP 910
>gi|398407389|ref|XP_003855160.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339475044|gb|EGP90136.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1316
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
F ++A+NP + D++ + V +PEL HL D VF +G RP ++ G D DGD +++
Sbjct: 865 AFGLVARNPAMAAWDIQRVRFVYKPELKHLTDLAVFSSRGHRPLASKLQGGDYDGDTFWI 924
Query: 810 TWDENLIPPSKKSCPP 825
WD L K + P
Sbjct: 925 CWDRKLATLFKNAPAP 940
>gi|392597508|gb|EIW86830.1| hypothetical protein CONPUDRAFT_115565 [Coniophora puteana
RWD-64-598 SS2]
Length = 1143
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 686 TAAIMLSAGFKPQTEPHLQGMLT-------------YELGELKECQCFIQVS-------- 724
TA +L +GF PQ P L+ LT Y+L C ++
Sbjct: 662 TAMALLDSGFTPQECPVLRDKLTAVVKSTVDRHVARYKLDVPMSCIAWMVPDPFGILAPD 721
Query: 725 ----ESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
SS +N K GS K Q + G V++ ++PC P DV+ + AV R EL
Sbjct: 722 EVHIRSSQDNLLQKDGS------KAQTVLGSVLLTRHPCKLPTDVQKVTAVQRGELAGYT 775
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
D +V +GDR + +G D DGD V W+ +I
Sbjct: 776 DVIVCSIQGDRRFADLLAGGDYDGDKAIVIWEPTII 811
>gi|406700852|gb|EKD04014.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1087
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
LG LK + +I S ++L N + + + + G V+I ++PC P DVR + A
Sbjct: 666 LGVLKPNEIYIAPSSAALVNP--------STMRPMSCVEGDVLIFRSPCKLPTDVRKMRA 717
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEAS---GSDLDGDLYYVTWDENLIPPSKKSCPP 825
V +L HL DC+V + AS G D DGD V WDE+L+ P + + P
Sbjct: 718 VYHSKLKHLQDCIVMSADSAMCTASPASLLAGGDYDGDTATVIWDEDLVKPFRNAPEP 775
>gi|320170627|gb|EFW47526.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1247
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 41/289 (14%)
Query: 561 DLAMEVAQILKLDGSPPPSAYQIRYAGYKG--VVACWPAKDD---GIR-------MSLRG 608
D A+E+ L D S PSAYQIR+ G+KG VV ++ GI M L
Sbjct: 403 DDALELPASLLEDNSFVPSAYQIRFGGFKGMLVVVTETVQEQLCKGISAAAPMPSMLLPR 462
Query: 609 SMKKFKSC----HTSLEI--CSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL 662
SM KF++ H LE+ C++ P LN +I+ +L + + + +
Sbjct: 463 SMLKFQTPDFPEHRRLEVLGCAFPS-SPVTLNNEIVDMLIGVATDSLVMRGFLKRLVTTF 521
Query: 663 ----NLMLVASDVAFEVLTASCAEQGNTAAIMLSAG----FKPQTEPHLQGMLTYELGEL 714
N +L A L E+ + ML+AG F T ++ +
Sbjct: 522 LDDCNFLLADQQKA---LAYYLQEKDDIGVRMLAAGHSLKFTYLTSFFRSKLIPLHIPLP 578
Query: 715 KECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDR- 773
+ + SSL G + + + +++G VV+ K PC D++ +A+DR
Sbjct: 579 STARLYGVADWSSL----LPPGHVYVNSGETGLVSGDVVMLKEPCFLRTDIQRFKAIDRD 634
Query: 774 ----PELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYVTWDENLI 816
+L HL + +VF ++ ++ GSDLDGD + V WD+ ++
Sbjct: 635 HVAFKQLCHLRNVVVFSTASSCTSSDASAMAGSDLDGDKFIVCWDQTIL 683
>gi|401882100|gb|EJT46373.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 1106
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
LG LK + +I S ++L N + + + + G V+I ++PC P DVR + A
Sbjct: 685 LGVLKPNEIYIAPSSATLVNPRT--------MRPMSCVEGDVLIFRSPCKLPTDVRKMRA 736
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEAS---GSDLDGDLYYVTWDENLIPPSKKSCPP 825
V +L HL DC+V + AS G D DGD V WDE+L+ P + + P
Sbjct: 737 VYHSKLKHLQDCIVMSADSAMCTASPASLLAGGDYDGDTATVIWDEDLVKPFRNAPEP 794
>gi|388853529|emb|CCF52928.1| uncharacterized protein [Ustilago hordei]
Length = 1363
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%)
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
V G V++ ++PCL P D+R + AV RPEL D +VF KG P + G D DGD
Sbjct: 856 HVPEGDVLVTRHPCLLPTDIRKVRAVVRPELSTYEDVVVFSIKGQGPLASLLGGGDHDGD 915
Query: 806 LYYVTWDENLIPPSKKS 822
V W+ L+ P + S
Sbjct: 916 TIRVFWEPKLVEPFQNS 932
>gi|297832166|ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329805|gb|EFH60224.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 934
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 754 IAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYV 809
+ +NP L GD+ +L+A L + FPQKG R +E +G D DGD+Y++
Sbjct: 584 VYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFI 643
Query: 810 TWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNL-----------------GQICNAH 852
+ + L+ K S P + + +KP + + + C
Sbjct: 644 SRNPKLLEYFKPSEPWV----SSSKPSKIYSGRKPSELSEEELEEELFKMFLKARFCKRD 699
Query: 853 VVH----------------ADRSEYGAFD--ENCILLAKLAATAVDSPKTGKIVTMPSHL 894
V+ D S ++ +N + L + A+D+PK G V +P L
Sbjct: 700 VIGMAADCWLGIMDPLLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDL 759
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
+ K +P +ME + + ++S ILG ++ +
Sbjct: 760 EIKNFPHYMERDPKRDFRSTSILGLIFDTV 789
>gi|392575871|gb|EIW69003.1| hypothetical protein TREMEDRAFT_73994 [Tremella mesenterica DSM 1558]
Length = 1405
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 744 KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD--RPHTNEASGSD 801
++ + G V+ ++PC P D+R AV RPEL HL DC+V + D R + G D
Sbjct: 957 RISYLEGPVLALRSPCKLPSDIRKFTAVYRPELVHLTDCIVMSARDDCRRSPASFLGGGD 1016
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAE 832
DGD + WD ++ P K + TP +
Sbjct: 1017 YDGDTVQIIWDPEIVGPFKNADDSFADTPQD 1047
>gi|449541618|gb|EMD32601.1| hypothetical protein CERSUDRAFT_126709 [Ceriporiopsis subvermispora
B]
Length = 1473
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 92/235 (39%), Gaps = 71/235 (30%)
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
G V++ +NPC DV+ + AV P+L D +V P KGDR + +G D+DGD+
Sbjct: 1064 GDVLVYRNPCRVASDVQKVTAVSHPKLTEYTDVIVLPTKGDRSLASLLAGGDVDGDVCVC 1123
Query: 810 TWDENLI-----PPSKKSCPPMECTPAEA------------------------------- 833
WD ++ PP PP E P E+
Sbjct: 1124 IWDPEIVSQFQLPPG----PPRE--PDESFLEEYFEPQGSVEQVSDLSKRLKELGAQDAQ 1177
Query: 834 ----KPLTCHVNHQNLGQ--ICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKI 887
K L +N +GQ I + + ++A YG D LA + AT +DS KTG
Sbjct: 1178 LELQKALLAGLNDLGVGQYSIFHENAIYA----YGYDDPVTRRLAFMFATVLDSRKTGLK 1233
Query: 888 VT--------------MPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAY 928
V P +KPK + ++ Y K L RQ+KG++
Sbjct: 1234 VKGAVQKEDKNLYDREQPECMKPK-----AKSKDQDPYSGGKNQRVLKRQVKGSF 1283
>gi|313243221|emb|CBY39877.1| unnamed protein product [Oikopleura dioica]
Length = 265
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 30/185 (16%)
Query: 500 IKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKI 558
I + G+F K + KYAAR+GL S+T I + E DI +G F+DG G++
Sbjct: 26 IWKYFGDFEKIKTVPKYAARLGLLISATRHAEFIEDGKWQLE-KDIVHHGCNFTDGCGRM 84
Query: 559 TPDLAMEV------AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD-DGIRMSLRGSMK 611
+ LA A K PS QIR+ G KG++ P+ D G + LR S K
Sbjct: 85 STQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRESQK 144
Query: 612 KF----------------KSCHTS--LEICSWTRFQP---GFLNRQIITLLSTLNVSDEI 650
KF K T L IC +P G LN+Q + +LS L + +
Sbjct: 145 KFEWNFNTIKGRLKYTEKKQGRTGRLLGICRGGESKPFVFGRLNKQFVLVLSALGIPNTT 204
Query: 651 FWTVQ 655
+Q
Sbjct: 205 LLEIQ 209
>gi|224093866|ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
gi|222852929|gb|EEE90476.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 17/209 (8%)
Query: 618 TSLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL 676
SLEI + R + FL++ +I LLS V +E F + + + +L A V
Sbjct: 190 NSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVA 249
Query: 677 TASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCF--IQVSESS-LENCFS 733
N A M+ G P EP+LQ L+ E K+ I V ES L
Sbjct: 250 LNYGDMDDNIVATMIGCGI-PLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTAD 308
Query: 734 KHGSRFAETKKLQVI------NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CL 783
G E+ ++ +I +G V++ +NP L GD+ IL+A EL +
Sbjct: 309 PTG--LLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAI 366
Query: 784 VFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
FP KG R +E SG D DGD+++V+ +
Sbjct: 367 FFPCKGPRSLADEMSGGDFDGDMFFVSRN 395
>gi|315048949|ref|XP_003173849.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311341816|gb|EFR01019.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1245
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 132/334 (39%), Gaps = 59/334 (17%)
Query: 508 TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVA 567
T + +K AR+ L S T T+ + P E + D SDG ++ L +A
Sbjct: 594 THQEYSKLFARIRLGLSRTIPTITLEPEEFIY---DNDPRQEQMSDGCAMMSRSLGRAIA 650
Query: 568 QILKLDGSPPPSAYQIRYAG-YKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWT 626
++L P + +Q AG +K V A+ + +R +++ H
Sbjct: 651 DSMRLPKVP--ACFQESPAGAFKPTVFYGTARQGYQKGVMRSLIQEEADEHY-------- 700
Query: 627 RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNT 686
+++I +L + + W Q +S + + +D AF T
Sbjct: 701 --------KKLIQILLNGDSAACRAWAQQVRDSS--SHVTALNDTAFPQSTI------RR 744
Query: 687 AAIMLSAGFKPQTEPHLQGMLTYEL-------GELKECQCF-IQVSESSLENCFSKHGSR 738
++L AG+ P + + +EL G +K I++S+S+ C H
Sbjct: 745 VNMLLDAGYLPS-----KLLFVWELFKQHFIDGFVKRLDAIKIKISKSTYAYCIPDHYGV 799
Query: 739 FAE--------------TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLV 784
E T L I+ V++++ P P DV+ AV RPEL HL + +
Sbjct: 800 LEEGEIYLDFGDTWEDGTTDLDGID--VLVSRAPAHFPSDVQKCRAVYRPELRHLKNVAI 857
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
F KG P + SG D DGD +V W+ ++ P
Sbjct: 858 FSTKGKVPLASLLSGGDYDGDQVWVCWEPEIVKP 891
>gi|238597177|ref|XP_002394255.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
gi|215462994|gb|EEB95185.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
Length = 279
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 36/220 (16%)
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLC------DCLVFPQKGDRPHTNEASGSD 801
+ G I+++P PGDV+ + A+ +P LC + +V P +G R ++ G D
Sbjct: 10 LEGRCTISRSPVAHPGDVQTVHAIGKPPTDKLCLFAHMKNVVVLPSRGKRSLASKLGGGD 69
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL----------TC-----HVNHQNLG 846
LDGDLY V L PP PM E L C ++N LG
Sbjct: 70 LDGDLYDVITYPELQPPLDNK--PMSYEAGETLTLKEDRTVEPRDICDFIVNYINSDVLG 127
Query: 847 QICNAHVVHADRSEYGAFDENCILLAKLAA----TAVDSPKTGKIVTMPSHLKPKKY--- 899
+ + +V AD+S+ G +D +C LAKL + AVD PK G V + P
Sbjct: 128 LLSDRLLVIADQSKDGIYDRDCEKLAKLCSQTTYQAVDYPKNGIPVDLDKDRLPNTLIRC 187
Query: 900 -PDFMEIEEYQT-----YKSNKILGRLYRQIKGAYDENIS 933
PD+ E Y S + LG ++R+++ A +I+
Sbjct: 188 KPDWHAAEVVDPRGTDYYMSTRALGEMFRKVRLAEPTDIA 227
>gi|242207403|ref|XP_002469555.1| predicted protein [Postia placenta Mad-698-R]
gi|220731359|gb|EED85204.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 25/149 (16%)
Query: 690 MLSAGFKPQTEPHLQGML-------------TYELGELKECQCFIQVSESSLENCFSKHG 736
+L AGF+P P L L Y++ + + FI + H
Sbjct: 793 LLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKIAVPRSAEAFIIPDPYGVLEESEIH- 851
Query: 737 SRFAETKKLQ---------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQ 787
F T+ LQ +I G V+I +NP P DVR ++AV P+L + +V P
Sbjct: 852 --FKSTQNLQDPLEESNPTIITGDVLIYRNPTRVPSDVRKVKAVSHPKLDKYVNVIVLPV 909
Query: 788 KGDRPHTNEASGSDLDGDLYYVTWDENLI 816
KG R N +G D+DGD+ +D +L+
Sbjct: 910 KGSRSLANILAGGDVDGDVCTCIFDPDLV 938
>gi|406863804|gb|EKD16851.1| hypothetical protein MBM_05320 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1323
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 66/361 (18%)
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGS 575
R L S T +TV + P ++ +I V +DG G+++P LA+++ Q L L S
Sbjct: 591 RTTLALSRTESTVVLMPDQIKIMAQNITFGDPKNVMNDGAGRMSPSLALKITQTLGL--S 648
Query: 576 PPPSAYQIRYAGYKGV-------------VACWPAKDDGIRMSLRGSMKKFKSCHTSLEI 622
P+A+Q R KG+ + +P++ +R G + H + E+
Sbjct: 649 YLPAAFQGRIGEAKGLWITDLHYTGQDDWIETYPSQRKWVRKKT-GDQESDDESHRTFEV 707
Query: 623 --CSWT--------RFQPGFLNRQIITLLSTLNVSD----EIFWTVQASMASKLNLMLVA 668
CS +F P ++R LL +SD + VQ ++ + L
Sbjct: 708 SKCSGPLKSADLNLQFLPILMDRAKDKLLMKRVLSDILKHGLQLRVQEIQEARDHPQLFR 767
Query: 669 SDVAFEVLTASCAEQGNTA-------------AIMLSAGFKPQ----TEPHLQGMLTYEL 711
V E+G+ I+L AGF P+ E + + T +
Sbjct: 768 QWVRDSNPNMKERERGSIGYKAGLPNVLEERLNILLDAGFHPKGIRFMEDLAKKVFTKRI 827
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFV----------------VIA 755
ELK+ + I V S+ E + + FV ++A
Sbjct: 828 DELKK-RLNITVGRSTYAYMVPDFWGVLEEGEVYIDFSSFVDNVSGLSGASPSGSQILVA 886
Query: 756 KNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENL 815
++P D++ ++AV R EL L D ++F KG ++ SG D DGD+ +V W+ +
Sbjct: 887 RSPAHFVSDIQKVKAVIREELVGLKDVIIFSVKGYPALADKLSGGDYDGDVAWVCWEPAI 946
Query: 816 I 816
+
Sbjct: 947 V 947
>gi|393236487|gb|EJD44035.1| hypothetical protein AURDEDRAFT_114369 [Auricularia delicata
TFB-10046 SS5]
Length = 1203
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
V+ G V++ ++PC+ P DVR + AVD L D + F KG R N SG D DGD
Sbjct: 777 VLLGDVLVGRHPCVLPTDVRKVVAVDSLALRPYRDIIFFSTKGTRSLANILSGGDYDGDT 836
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKP-------------LTCHVNHQNL-------- 845
+ W ++ P + + + PA + H NH L
Sbjct: 837 AVLIWQTEVVQPFQNAPLHLADPPANVETSFEAEMQSVKDLLTNGHFNHLRLSFLLSGLK 896
Query: 846 ----GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
G N H++ Y +E LA ++ +D+PKTGK
Sbjct: 897 KNPVGLYSNFHLLACYVQGYR--NEETRRLAHISGQLLDAPKTGK 939
>gi|171685170|ref|XP_001907526.1| hypothetical protein [Podospora anserina S mat+]
gi|170942546|emb|CAP68197.1| unnamed protein product [Podospora anserina S mat+]
Length = 1478
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++A++P DV+ + AV +P+LH L D +VF KG+ P + SG D DGD+ +V W
Sbjct: 1048 VLVARSPAHFASDVQRVRAVFKPQLHALKDVIVFSSKGNVPLAEKLSGGDYDGDMAWVCW 1107
Query: 812 DENLI 816
D ++
Sbjct: 1108 DPLIV 1112
>gi|168049572|ref|XP_001777236.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162671338|gb|EDQ57891.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1040
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 129/561 (22%), Positives = 208/561 (37%), Gaps = 107/561 (19%)
Query: 511 NIAKYAARMGLCFS-STHATVEIPPTEVDHELPDIKRNG-------YVFSDGIGKITPDL 562
+ ++A+R+ L S S A + EV ++PDI ++G +I+PD+
Sbjct: 404 TMPRFASRLQLALSKSVTANLNWDEIEV-KQIPDILSKTLDNSGKFMAHTEGTSEISPDV 462
Query: 563 AMEVAQILKLDGSPPPSAYQIRYAG---YKGVV--ACWPAKDD--GIRMSLRGSMKKFKS 615
A + + P Y G +KG+ W G+++ R SM K S
Sbjct: 463 ARLLPCSVCKGRVGEPKGYPTLVQGCLFWKGMAIKGTWQVNHQLKGLQILYRPSMVKVTS 522
Query: 616 --------CHTSLEICSWT---RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNL 664
S E+ + + + L++ +I LLS NV F + KL
Sbjct: 523 DPILKDIPTIKSFEVVNTNTCYKLEEARLSQDLIILLSINNVPASFFLELVEKALEKLRT 582
Query: 665 MLVASDVAFEVLTASCAEQ---GNTAAIMLSAGFKPQTEPHLQ-----------GMLTYE 710
F L SC+ G+ M+ A P + P +Q +L
Sbjct: 583 FFTERGQVFREL-KSCSPDYAVGDQTLRMIMANI-PMSNPQMQNNLKKITQDKIALLRKG 640
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
L + + S+ + E + A K + + G V++ KNP GDV I +A
Sbjct: 641 CLPLPQSYYLMGTSDPTKEKVLKPN--EVAIVKNGEKVIGKVLVYKNPGKHWGDVHIFDA 698
Query: 771 V--DR--PELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYY-VTWDENLIP-------- 817
V +R P + + F +G+RP +E + SDL GDL++ ++ +P
Sbjct: 699 VWDERLNPYVGPTKHAIFFSVRGNRPVVDEIANSDLCGDLFWLISLFTPSLPWKRIGEKI 758
Query: 818 -------PSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADR-----------S 859
PS + +E T + + ++ + Q H DR
Sbjct: 759 NYPIGDGPSNLTSRALEYTLFDKFLKSRFTPYKPMSQAGIFWTAHMDRYLSLKDADEYSD 818
Query: 860 EYGAFDENCILLAKLAATAVDSPKTGK------------IVTMPSHLKPKKYPDFM-EIE 906
E E+ L + A+D+ KTG+ V +P L+P +P F+ EI+
Sbjct: 819 ELELISESLEELIDIFYRALDADKTGEELCLHRHTFAWMSVKLPRRLEPDCFPHFLKEIQ 878
Query: 907 EYQT-YKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARN 965
+T Y S ILG++Y + D I E I YD E G D
Sbjct: 879 TNRTYYTSTSILGQIYDMVVRNVD-GIGCKPEETIA-----YDPKFEY-GRFD------- 924
Query: 966 QKCSYDGQLNGLLGQYNVNRK 986
Y + GLL QYN + K
Sbjct: 925 ---RYMERWRGLLQQYNKDIK 942
>gi|402224034|gb|EJU04097.1| hypothetical protein DACRYDRAFT_14289 [Dacryopinax sp. DJM-731 SS1]
Length = 1239
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT--NEASGSDLDG 804
V+ G V+I ++PC P D+++++AVD PEL H D ++ +P + ++ +G D DG
Sbjct: 905 VVVGDVLIVRHPCKLPSDIQLVKAVDCPELRHWKDVIITSVDRSQPRSLLSKLAGGDYDG 964
Query: 805 DLYYVTWDENLIP---PSKKSC--PP 825
D + WD++LI P+ C PP
Sbjct: 965 DTVVIYWDKDLIAGFKPASDECLDPP 990
>gi|325190799|emb|CCA25290.1| RNAdependent RNA Polymerase1 (RDR1) putative [Albugo laibachii
Nc14]
Length = 557
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 840 VNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY 899
V+ LG NAH+ D S+ G+FD + + LA + + VD + + + + L P Y
Sbjct: 2 VHSSVLGIASNAHLARCDYSDKGSFDPDSMKLAWICSLQVDGHRAEEHLQVIRDLSPPIY 61
Query: 900 PDFMEIEEYQTYKSNKILGRLYRQIK 925
PDFME E + +++S+K LG LYR K
Sbjct: 62 PDFMESERF-SHRSSKSLGTLYRSSK 86
>gi|242216295|ref|XP_002473956.1| predicted protein [Postia placenta Mad-698-R]
gi|220726900|gb|EED80835.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
++ G V+I +NP P DVR ++AV P+L + +V P KG R N +G D+DGD+
Sbjct: 869 IVTGDVLIYRNPTRVPSDVRKVKAVSHPKLDKYVNVIVLPVKGSRSLANILAGGDVDGDV 928
Query: 807 YYVTWDENLI 816
+D +L+
Sbjct: 929 CTCIFDPDLV 938
>gi|393224586|gb|EJD32918.1| hypothetical protein AURDEDRAFT_177990 [Auricularia delicata
TFB-10046 SS5]
Length = 655
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 35/176 (19%)
Query: 744 KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLD 803
+ V+ G V+ ++PC+ P D++ + AV+R EL D +V +G R + +G D D
Sbjct: 256 QFDVLEGDCVMGRHPCMLPSDLQKVRAVNRAELGQYRDVVVCATRGRRSLASLLAGGDYD 315
Query: 804 GDLYYVTWDENLIPPSKKS--------CPPME---CTPAEAKPLTCHV------------ 840
GD +TW ++ P + S PP E C E+ P +
Sbjct: 316 GDKVVITWYAPIVTPFEMSEEASERFATPPAELASCFEQESAPTLAELVSTGPLSDKGPA 375
Query: 841 -------NHQNLGQICNAHVVHADRSEYGAFDENCILLAKLA---ATAVDSPKTGK 886
+ +G + N H+V A + Y +LLA + ++ +DS K+G+
Sbjct: 376 VILRGLRDKGRVGLVANFHLVSAYMTGYDG--PETVLLAHMHVSFSSLLDSAKSGR 429
>gi|409079756|gb|EKM80117.1| hypothetical protein AGABI1DRAFT_127795 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1114
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
+I G V+I ++PC P DV+ +A+D PELH D ++ +G R + +G D DGD
Sbjct: 706 HIITGDVLITRDPCRLPTDVQKWKAIDVPELHQYKDVIILSVQGPRRAADWLAGGDYDGD 765
Query: 806 LYYVTWDENLI 816
+ W L+
Sbjct: 766 KAKLIWQPELV 776
>gi|426198482|gb|EKV48408.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1114
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
+I G V+I ++PC P DV+ +A+D PELH D ++ +G R + +G D DGD
Sbjct: 706 HIITGDVLITRDPCRLPTDVQKWKAIDVPELHQYKDVIILSVQGPRRAADWLAGGDYDGD 765
Query: 806 LYYVTWDENLI 816
+ W L+
Sbjct: 766 KAKLIWQPELV 776
>gi|224146916|ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 685 NTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSR----FA 740
N A M+ G P EP+LQ L+ + E K+ ++ + + + G+
Sbjct: 34 NIVATMIGCGI-PLEEPYLQCRLSILMKEEKKS---LKGGKIPVPESYYLMGTADPTGLL 89
Query: 741 ETKKLQVI------NGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGD 790
E+ ++ +I +G V+I +NP L GD+ IL+A EL + FP KG
Sbjct: 90 ESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGP 149
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP 835
R +E SG D DGD+++V+ + L+ K++ P TP+ + P
Sbjct: 150 RSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEP---WTPSTSTP 191
>gi|391343490|ref|XP_003746042.1| PREDICTED: uncharacterized protein LOC100901929 [Metaseiulus
occidentalis]
Length = 1356
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 143/338 (42%), Gaps = 51/338 (15%)
Query: 745 LQVINGFVVIAKNPCLRPGDVRILEAVDRPE----LHHLCDCLVFPQK-GDRP---HTNE 796
L+V++G +V+A+ + + R + AV+RP+ L HL +C+V P K G RP E
Sbjct: 747 LRVLSGDLVLARKDAMHLEEFRRVTAVNRPDVVGALGHLFNCVVLPSKGGSRPLEFLARE 806
Query: 797 AS-GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTC----------HVNHQNL 845
AS + D L DE K++ PP + A + ++++ +
Sbjct: 807 ASYAGESDIILIASHPDEEPAFLFKRNDPPRSTSIAVGPAVDSGCDIETHFFNYLSYVSF 866
Query: 846 GQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFME- 904
AD A E+CI A +D + G P K K+P F+E
Sbjct: 867 NDFEEVFCALADYLPQHASSESCI-RAGAQQRLLDKYRRGGREGAPLP-KVVKFPHFLEK 924
Query: 905 IEEYQTYKSNKILGRLYRQIKGA----YDENISVSSEVDINPVDIHYDTDLEVPGSVDFT 960
I + +TY S + L +Y++ + ++E + ++ +V P +L+V GS F
Sbjct: 925 ISDGKTYCSTRPLAHIYQKGRAIDTKYFEETLMMTDDVTFQP-------ELQVEGSQVFA 977
Query: 961 ADARNQKCSYDGQLNGLLGQYNVNRKEF--------RHIWSMPKYNSRKQGELQERLKHS 1012
A S+ +L G+ + ++ E R +S + S + ++ ++KH
Sbjct: 978 EVAERDMRSFKRELGGIAALHEISVDEVLTGTIFSNRGQYSSSERRSNIEATVKLQVKHL 1037
Query: 1013 YSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWY 1050
R+ F++ EK +E VL QK SA+Y
Sbjct: 1038 ALICRRRFKKGVEKA--------SEVEVL--QKISAYY 1065
Score = 47.8 bits (112), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 7/178 (3%)
Query: 468 GRRYSFLAFSSNQLRDHSAWFFS-KVGET-SVLDIKNWMGEFTAKNIAKYAARMGLCFSS 525
G+ Y FL S +Q D S W ++ + G+T ++ ++ +G N+A+ A L F+
Sbjct: 456 GKTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRERLG--ITGNLARRIAVQDLVFAE 513
Query: 526 THATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRY 585
V I P+ V E D+ F GIG+I+ V + + SA ++ +
Sbjct: 514 ALGAVSIDPSWVSEESEDVP-AASDFKHGIGRISEAALRTVVENCHWSRT-LCSAIRVVH 571
Query: 586 AGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLST 643
G +G + P+ +G R+ R S KS ++L + + + +R I+ LS+
Sbjct: 572 GGRRGTLVYDPSL-EGSRIIYRKSQTVIKSEDSTLYLIERSEIKNAAFDRTFISTLSS 628
>gi|392562423|gb|EIW55603.1| hypothetical protein TRAVEDRAFT_128797, partial [Trametes
versicolor FP-101664 SS1]
Length = 894
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 686 TAAIMLSAGFKPQTEPHLQGMLT-------------YELGELKECQCFIQ------VSES 726
T ++ AGF PQT P L+ L Y C FI + +
Sbjct: 414 TCLTLIDAGFTPQTCPVLRAKLMEVAKKVVTTFKTKYRFAVPMSCSAFIVPDPYGVLGPN 473
Query: 727 SLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
+ S+ E ++ ++ G V++ ++PC P DV+ ++AV L H C+ +V
Sbjct: 474 EIHVKCSRRDFVDQEGRQTDIVLGDVLVTRHPCKVPSDVQKVKAVFHERLRHYCNVIVVS 533
Query: 787 QKG--------DRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
K DR + G D DGD V WD L+ K+ P
Sbjct: 534 TKSHTYQGVPLDRHLASLTGGGDYDGDTMEVFWDPALVGAFKEPDP 579
>gi|302673317|ref|XP_003026345.1| expressed protein [Schizophyllum commune H4-8]
gi|300100027|gb|EFI91442.1| expressed protein [Schizophyllum commune H4-8]
Length = 984
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
LG L E + F S S ++ E +Q + G V++ + P P D+R ++A
Sbjct: 559 LGVLNEDEIFYMPSPSFMDP---------KEQVMVQAVEGEVIVGRYPIRLPSDLRKVKA 609
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
V+RP LH + ++ P G+R + SG D DGD+ ++
Sbjct: 610 VNRPALHQYTNVILVPTVGERSLVSLLSGGDCDGDILFM 648
>gi|336376861|gb|EGO05196.1| hypothetical protein SERLA73DRAFT_68825 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389793|gb|EGO30936.1| hypothetical protein SERLADRAFT_432597 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1094
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKG-DRPHTNEASGSDLDGD 805
++ G V++ ++PC P DV+ + AV++ EL H D +V P KG +R + +G D DGD
Sbjct: 686 IVLGDVLLTRHPCKLPTDVQKVRAVEKAELRHFKDVIVCPVKGTNRRFADLLAGGDYDGD 745
Query: 806 LYYVTWDENLIPPSKK-----SCPPMECTPAE 832
W + ++ P K S PP + PA+
Sbjct: 746 KAIAIWQKEIVSPFKNADLKYSHPPADL-PAQ 776
>gi|408399167|gb|EKJ78292.1| hypothetical protein FPSE_01753 [Fusarium pseudograminearum CS3096]
Length = 1388
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
+++A+ P DV+ + AV RP L L D +VF KG P + SG D DGD +V W
Sbjct: 957 ILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIVFSSKGKSPLADMLSGGDYDGDQAWVCW 1016
Query: 812 DENLIPPSKKSCPPME 827
D +++ + P E
Sbjct: 1017 DPDIVRNFSNASKPAE 1032
>gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gibberella zeae PH-1]
Length = 1372
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
+++A+ P DV+ + AV RP L L D +VF KG P + SG D DGD +V W
Sbjct: 941 ILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIVFSSKGKSPLADMLSGGDYDGDQAWVCW 1000
Query: 812 DENLIPPSKKSCPPME 827
D +++ + P E
Sbjct: 1001 DPDIVRNFSNASKPAE 1016
>gi|328861348|gb|EGG10451.1| hypothetical protein MELLADRAFT_103030 [Melampsora larici-populina
98AG31]
Length = 1075
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC-DCLVFPQKGDRPHTNEASGSDLDGD 805
++ G +I ++PC P DVR ++ V L + D +V +GDR + SG D DGD
Sbjct: 595 ILAGPALIWRSPCAAPIDVRKIQLVANEHLQRVYFDVIVCSTRGDRAMLSMLSGGDYDGD 654
Query: 806 LYYVTWDENLIPPSKKSCP 824
VTWD+ L+ P + + P
Sbjct: 655 QVSVTWDKRLVDPFQNADP 673
>gi|224144332|ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
gi|222873590|gb|EEF10721.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
Length = 211
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 47/197 (23%)
Query: 860 EYGAFDENCILLAKLAATAVDSPKTG-KIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILG 918
E +N LL + A+D+PK G + + +P LK + +P FME E +TY+S ILG
Sbjct: 14 EIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILG 73
Query: 919 RLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLL 978
++Y ++K AY E++ +SS V ++ C + GL
Sbjct: 74 KIYDKVK-AY-EDMDLSSNV--------------------------HESCLV--KWKGLY 103
Query: 979 GQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEK 1038
GQY R E R+ K K E E + K+++++ + ++F LS
Sbjct: 104 GQY---RTEMRNALQAGK---EKNNEANEVI--------KKYKEILYEA-AEFNLSRRRD 148
Query: 1039 NVLYEQKASAWYQVTYH 1055
++E+ A A YQVTY+
Sbjct: 149 EEIFEE-ARALYQVTYN 164
>gi|313237377|emb|CBY12568.1| unnamed protein product [Oikopleura dioica]
Length = 316
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 500 IKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKI 558
I + G+F K + KYAAR+GL S+T I + E DI +G F+DG G++
Sbjct: 26 IWKYFGDFEKIKTVPKYAARLGLLISATRHAEFIEDGKWQLE-KDIVHHGCNFTDGCGRM 84
Query: 559 TPDLAMEV------AQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD-DGIRMSLRGSMK 611
+ LA A K PS QIR+ G KG++ P+ D G + LR S K
Sbjct: 85 STQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRESQK 144
Query: 612 KFK 614
KF+
Sbjct: 145 KFE 147
>gi|7505900|pir||T23669 hypothetical protein M01G12.12 - Caenorhabditis elegans (fragment)
gi|25395342|pir||F87936 protein M01G12.12 [imported] - Caenorhabditis elegans
Length = 604
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 44/168 (26%)
Query: 389 VRRLVITPTKAYWFLESKDVADRFLR-----------VTFMDEGLQTMNANVLSYYVAPI 437
VR+++ TPT+ + + +R LR VTF D+ + M AN +
Sbjct: 450 VRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELL--- 506
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET-- 495
DI VK L G + R + FL SS+Q+RD+ A+F K +
Sbjct: 507 --DIC-------------VKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 496 ------------SVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATV 530
++ ++N +G F +NI K AR+G CF+ + +V
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRVSV 599
>gi|403160269|ref|XP_003320812.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169485|gb|EFP76393.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1164
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKK---LQVINGFVVIAKNPCLRPGDVRIL 768
G LKE + F+++S RF + K + ++ G V+A++PC+ P D R +
Sbjct: 684 GTLKEGEVFLRLS-------------RFRDPKTSVPVNILKGDCVVARSPCVLPTDARKV 730
Query: 769 EAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDE----NLIPPSKKSCP 824
+AV L D LV +G + + SG D DGD+ V WD+ N + K
Sbjct: 731 KAVTNQRLACYEDVLVCSIQGKKSLLDYLSGGDYDGDVVIVIWDDAFTKNFVNADDKHLL 790
Query: 825 PME 827
P E
Sbjct: 791 PTE 793
>gi|403411358|emb|CCL98058.1| predicted protein [Fibroporia radiculosa]
Length = 1270
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 27/152 (17%)
Query: 690 MLSAGFKPQTEPHLQGMLTYELGEL--KECQCFIQVSESSLEN------------CFSKH 735
+L AGF P P +L +L ++ K + FI+ LEN +
Sbjct: 783 LLQAGFHPLELP----ILYEKLRQIVEKRIEEFIKEYRIVLENSAEAFIMPDPYGVLEEG 838
Query: 736 GSRFAETKKLQ---------VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFP 786
+F T+ L+ I G V++ +NP P DVR + AV P+L + +V P
Sbjct: 839 QIQFIATQNLKDPLEDPMPMAITGEVLLYRNPARVPSDVRKVIAVVHPKLVEYVNVIVLP 898
Query: 787 QKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
KG R N +G D+DGD+ ++ +L+ P
Sbjct: 899 TKGKRSLANILAGGDVDGDVAVCIYEPSLVKP 930
>gi|154285562|ref|XP_001543576.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407217|gb|EDN02758.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1055
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 36/148 (24%)
Query: 696 KPQTEPHLQGMLTYELGELKECQCF--------IQVSESSLENC---------------- 731
KP EP L T+E+ + + Q + I VS+S+ C
Sbjct: 545 KPMDEPQL----TFEVVQWRLLQDYLDNLKKLKITVSQSTFAYCVADPFGVLRPDEVHLG 600
Query: 732 FSK---HGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQK 788
FS+ HGS E + V+ +A+ P D++ ++V + EL H+ D +VFP
Sbjct: 601 FSREWEHGSAGTELHDIDVL-----LARLPAHLATDIQKRKSVYKNELRHMKDVIVFPTT 655
Query: 789 GDRPHTNEASGSDLDGDLYYVTWDENLI 816
GD P + SG D DGD +V WD ++
Sbjct: 656 GDTPLASLLSGGDYDGDQCWVCWDPIIV 683
>gi|324526384|gb|ADY48663.1| RNA-dependent RNA polymerase 2 [Ascaris suum]
Length = 156
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 517 ARMGLCFS-STHATVEIPPTEVDHELP-----DIKRNGYVFSDGIGKITPDLAMEVAQIL 570
ARMG CF+ + ++++ + D Y FSDG G+++P+ A +A L
Sbjct: 2 ARMGQCFTQAKECSIKLLHRRYNKTFDIIGGMDSSGEPYTFSDGCGRLSPEFAQRIADDL 61
Query: 571 KLDGSPPPSAYQIRYAGYKGVV---------ACWPA------------KDDGIRMSLRGS 609
L G PS +QIR+ G KGVV A W K + + M R S
Sbjct: 62 HL-GKCVPSCFQIRFRGIKGVVSVDPWLTERASWATEHNIADNMENYNKKNKLYMLFRPS 120
Query: 610 MKKFKS-CHTSLEICSWTRFQPGFLNRQIITLLST 643
KF + +EI ++ P LNR I +L T
Sbjct: 121 QDKFHAPLSHKIEIVKYSSPTPVCLNRPYIAILLT 155
>gi|299747734|ref|XP_001837224.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
gi|298407654|gb|EAU84841.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
Length = 1039
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 123/331 (37%), Gaps = 59/331 (17%)
Query: 521 LCFSSTHATVEIPPTEVD--HELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
+ + + V P +++D H + DI RN + K + LA+EV L +G PP
Sbjct: 372 IYLTPSQRKVIYPESDMDPAHLVIDIVRNSRI------KTSKKLAVEVIINLAENGVPPR 425
Query: 579 SAYQIRYAGYKGVVAC---WPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNR 635
+ + V W D IR++ F L R PG R
Sbjct: 426 VFTDLLHDMLLEQVDAALTWNGPDAMIRLA------AFVEKIGGLRSARLARENPG---R 476
Query: 636 QIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGF 695
+ S +V D + +M+ L ++ + ++ S + T +L +GF
Sbjct: 477 ARVNGYSEADVDDNEMFEDDDNMSESSVLTHQSTAWWPDPVSGSPSSLEETVLALLQSGF 536
Query: 696 KPQTEPHLQGML-------------TYEL---------------GELKECQCFIQVSESS 727
P P L L +Y + G LKE + F + SS
Sbjct: 537 HPGFCPVLAEKLKAVIRTRVSRLTHSYRIEVPMSCMAMIVPDKRGILKEGEIFFR---SS 593
Query: 728 LENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVR--ILEAVDRPELHHLCDCLVF 785
+ + G +K +I G V+I + PC P D++ +AVD P LH L ++
Sbjct: 594 HRDLLDRDG------EKTDIITGDVLITRYPCKLPTDIQKASCKAVDHPGLHDLVGVIIL 647
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
KG R + G D DGD + W ++
Sbjct: 648 STKGTRRAADFIGGGDYDGDKAMIIWHPPMV 678
>gi|392597983|gb|EIW87305.1| hypothetical protein CONPUDRAFT_87147 [Coniophora puteana
RWD-64-598 SS2]
Length = 1075
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
G LKE + + + S+ + + G+RF ++ G V++ +NP P DV+ + AV
Sbjct: 667 GVLKEGEIYFRSSDGFKD---PETGARF------DILKGDVLVLRNPTRLPSDVQKVRAV 717
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
PEL D ++FP G R + G GD V WD+ L+ P
Sbjct: 718 TYPELEKYYDVIIFPTCGARSLASYLGG----GDTVLVVWDKQLVQP 760
>gi|353241158|emb|CCA72990.1| related to qde-1 RNA-dependent RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1766
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 510 KNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRN-GYVFSDGIGKITPDLAMEVAQ 568
++++K A R+ L FS T V + P + H + DI+ + G VF+DG G +TP LA +A+
Sbjct: 949 QDMSKLATRLELGFSDTLPGVLLEPAHI-HVVNDIENDDGTVFTDGAGLMTPSLARTLAR 1007
Query: 569 ILKL------DGSPPPSAYQIRYAGYKGVVACWPAK------DDGIRMSLRGSMKKFKSC 616
D P AYQIR KGVV P D R+ L SM K
Sbjct: 1008 KYPTKDQRDRDALDTPVAYQIRVQTAKGVVLIDPDMLVDRNFDGPHRLLLSKSMCKAARG 1067
Query: 617 HTSLEI-------------CSWTRFQPG--------FLNRQIITLLSTLNVSDEIFWTVQ 655
+ L C +P L+ Q IT+LS+ V D++F +Q
Sbjct: 1068 NKPLRPGPVNGMHILDAADCIVCIVKPAPVSASTGVRLSSQFITVLSSCGVPDDVFLQIQ 1127
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 681 AEQGNTAAIMLSAGFKPQTEPHLQGMLTYEL-GELKECQCFIQVSESSLENCFSKHGSRF 739
+E + A + + A F E G L + G LKE + F + ++
Sbjct: 1274 SEMASEAMMRVVAKFHLPVERSACGFLQPDFTGSLKEGEVFFSPKSAMVD---------- 1323
Query: 740 AETK-KLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS 798
+ET +Q I G V++ ++P L P D+R ++AV P+L L G+ P + +
Sbjct: 1324 SETGLAVQFIEGDVIVGRHPALLPTDMRKVKAVFVPKLQDFKGILFCSIHGELPLASILA 1383
Query: 799 GSDLDGDLYYVTWDENLIPPSKKS 822
G D DGD + W++ ++ P K +
Sbjct: 1384 GGDYDGDEGTIIWEQRIVHPFKNA 1407
>gi|409051063|gb|EKM60539.1| hypothetical protein PHACADRAFT_82474, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 639
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 76/197 (38%), Gaps = 49/197 (24%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHT--------NEAS 798
VI G V+I ++PC P DV+ ++AV+R EL D +V KG R T +
Sbjct: 438 VIVGDVLITRHPCKVPSDVQKVKAVNRRELRGYKDLVVVSTKGHRVQTQLLDRHLLSMLG 497
Query: 799 GSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQN-------------- 844
G D DGD V W+ L+ + + P TP ++ L N ++
Sbjct: 498 GGDYDGDRVQVFWNPELVDGFQPADPAF-ATPPKSVELGLEKNTESVESFLRRVPDTAPR 556
Query: 845 -----------LGQICNAHVVHADRSEYGAFDEN-----------CILLAKLAATAVDSP 882
LG + N +V +Y F EN I LA L +D
Sbjct: 557 KQRIFELQRVLLGPLQNTSLV----GKYSTFWENAVYQHGYGSTEAIRLAYLFCAVLDGS 612
Query: 883 KTGKIVTMPSHLKPKKY 899
KTG V K KK+
Sbjct: 613 KTGVTVKAEQWGKDKKH 629
Score = 40.8 bits (94), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 477 SSNQLRDHSAWFFSKVGETSVLDIKNWMGEF---TAKNIAKYAARMGLCFSSTHATVEIP 533
S N D + + S L+ NW + + +AK++AR+ L S++ + I
Sbjct: 257 SKNAQADRTTKYQSWCSGQDFLEFINWYNPLQLNSEQTMAKWSARLSLGLSTSIPGIRID 316
Query: 534 PTEVDHELPDIKRNGYVFSDGIGKITPDLAM 564
PT + H +PDI GY G GK DL M
Sbjct: 317 PTHL-HHIPDIVSEGY---KGEGKAPADLTM 343
>gi|389740950|gb|EIM82140.1| hypothetical protein STEHIDRAFT_124929 [Stereum hirsutum FP-91666
SS1]
Length = 982
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 31/156 (19%)
Query: 686 TAAIMLSAGFKPQTEPHL--------QGMLTYELGELK-----ECQCFIQVS-------- 724
T ++L +GF PQ P L +G + L K C FI
Sbjct: 484 TVCVLLDSGFTPQNNPVLASKLEKVIKGAVNKRLARCKVEVPMACTAFIIPDPFGVLNEG 543
Query: 725 ----ESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
+SSL N + G A+ I G V++ +NPC P D++ + AV EL
Sbjct: 544 EIHIKSSLTNLQRQDGLSTAQ------ILGPVLVTRNPCKLPSDIQKVTAVFCAELRDYD 597
Query: 781 DCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
D +VF KG R + + D DGD W ++
Sbjct: 598 DVIVFSTKGRRSLASLLATGDYDGDKAVAIWQPEIV 633
>gi|426200996|gb|EKV50919.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1000
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
LG L E + + + SES L+ R T ++ G V++ + P D++ ++A
Sbjct: 601 LGILDEGEIYFRSSESLLD-------PRTQLT--YDIVTGDVILGRYPVRLASDLQKVKA 651
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS--CPP 825
V++PEL+ D ++ KG R + SG D+DGD ++ + +++ P + PP
Sbjct: 652 VNKPELYRWPDVIIVSTKGKRSLASLLSGGDMDGDTLFMLREPDIVEPFRNQPFVPP 708
>gi|242215346|ref|XP_002473489.1| predicted protein [Postia placenta Mad-698-R]
gi|220727390|gb|EED81310.1| predicted protein [Postia placenta Mad-698-R]
Length = 1162
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 111/279 (39%), Gaps = 75/279 (26%)
Query: 378 EGPKNIDDIAEVRRLVITPTKAYWFLESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
EGP + + +R+ YW D F+RV F+DE L +
Sbjct: 358 EGPTRVQSNSVIRK--------YW-----PHRDHFIRVDFLDENLSQYRFD--------- 395
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
+++ +F + V +L GF + G + + S Q +
Sbjct: 396 -REVDGPAF-----LHDHVGKVLKGGFEVAGSPFDYSPDSEMQ----------PAVRMTA 439
Query: 498 LDIKNWMGEFTAKNI-AKYAARMGLCFSSTHATVEIPP---TEVDHELPDIKRNGYVFSD 553
I+ +G+ + I AKYAAR+G F+ST ++ I E+D E+ + + N +D
Sbjct: 440 DRIRGALGDLSEIKIPAKYAARIGQAFTSTMCSMPISRDQWEEID-EIWEDRENPRSHTD 498
Query: 554 GIGKITPDLAMEVAQILKLDGSP-------PPSAYQIRY------------------AGY 588
G+G+++ L + I+ + P PSA Q R+ GY
Sbjct: 499 GVGRLSQALMDRIWDIV-CNLYPDYGVYGVKPSAVQFRFLGKSFNTIVQKITHSSSPLGY 557
Query: 589 KGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTR 627
KGV+A P + G R+ R M+KFK IC + R
Sbjct: 558 KGVLAVDP-QLSGERICFRPEMRKFKPL-----ICPYCR 590
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICN--AHV 853
E S + DLYYV L+P + PA + + +C+
Sbjct: 849 ERSCASFRCDLYYVFQYYQLLPT-------IHIAPASYNDIKPPGRPFDWTDVCDFITEY 901
Query: 854 VHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM---PSHLKPKKYPDFMEIEEYQ- 909
+H+D + +G+ D C+ LA+L + AVD PKTG+ V M P L + PD+ E+
Sbjct: 902 MHSD-ALHGSHDPRCMRLAELCSDAVDYPKTGRPVDMRTAPGKLM-QYNPDWYADEDTNA 959
Query: 910 -----TYKSNKILGRLYRQIK 925
+Y+S+++LG LYR IK
Sbjct: 960 NPLADSYQSDRVLGHLYRGIK 980
>gi|147767777|emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 136/344 (39%), Gaps = 75/344 (21%)
Query: 626 TRFQP--GFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCA-- 681
T QP +L++ +I LLS V +E F +NL+ A + A V + S
Sbjct: 782 TSNQPRRSYLSKYLIALLSYGGVPNEYF----------MNLLKDALEDAPSVQSISLRFD 831
Query: 682 EQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGSRFAE 741
E ++ + P EP LQ L++ + E ++ ++V + + +CF G+
Sbjct: 832 EMDDSIVTRMILSGIPIDEPFLQHRLSFMVNEERKG---LRVGKLPVNDCFYLMGTA-DP 887
Query: 742 TKKLQV-----------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD 790
T KL+ + G V++ K+P L GD+ +L A L ++
Sbjct: 888 TGKLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEAL----------EEAS 937
Query: 791 RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKP------LTCHVNHQN 844
P + S + PSK+ P + +P E + LT +
Sbjct: 938 EPWMRKXSTRHV---------------PSKR---PTDFSPDELEHELFQLFLTTRFQTSS 979
Query: 845 -LGQICNAHVVHADR---------SEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHL 894
+G + +V DR E + L + A+D+PK+G V + L
Sbjct: 980 AIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKEL 1039
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEV 938
K +K+P FM E +Y S ILG++Y ++ EN S V
Sbjct: 1040 KAEKFPHFMGRE--SSYHSTSILGQIYDAVESFQPENQSTKDAV 1081
>gi|395335049|gb|EJF67425.1| hypothetical protein DICSQDRAFT_177042 [Dichomitus squalens
LYAD-421 SS1]
Length = 1306
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 750 GFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYV 809
G V+I +NPC P DV+ + AV L D +V P G R + +G D DGD+ V
Sbjct: 871 GEVLIYRNPCRLPSDVQKVTAVQCDVLAAYTDVIVLPTVGARSFASYLAGGDYDGDVAVV 930
Query: 810 TWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQI 848
+D+ L+ + PP+ P P N +++G I
Sbjct: 931 IYDDRLV--KDFTTPPVTQEP----PDFIKNNFEDMGTI 963
>gi|145531992|ref|XP_001451757.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419423|emb|CAK84360.1| unnamed protein product [Paramecium tetraurelia]
Length = 1257
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 11/224 (4%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLD--IKNWMGEFTAKNIAKYAA 517
L++GF +C ++ FL +++ +LR + W +KV + + + N+ T + A+ +
Sbjct: 629 LTEGFTICSEQWKFLGWNNKELRSNIIWM-NKVSNKELDNYILANFKQNSTLQQKAEVKS 687
Query: 518 RMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPP 577
R F T E + I N + G+I+ +L ++ +I +
Sbjct: 688 RFRNFFIDG-LTTEFKQLIIVVIRNQINENNF---SQFGQISRNLIDKIREIF---MNQE 740
Query: 578 PSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQI 637
S ++ + G + ++ D I + L K F S + + I + +++ FLNR +
Sbjct: 741 ISVVKVVFNGVQYILQLNNNLKDNI-IQLNSQYKIFSSFNDQITIIDYNKYRGAFLNRGL 799
Query: 638 ITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCA 681
I L + V +++F + +++ + V+ ++ + C
Sbjct: 800 IRLFYQMGVKEDVFIQLLNWHLGQISKAFIVRSVSLDLKSELCG 843
>gi|414588065|tpg|DAA38636.1| TPA: hypothetical protein ZEAMMB73_143695 [Zea mays]
Length = 214
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 55/212 (25%)
Query: 857 DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKI 916
D+ E + EN I L L A+D K V + HL+ K YP FME + +++Y S+ I
Sbjct: 10 DQDEKKSIVENMIKLVDLYYAALDGHK----VDVDRHLRVKAYPHFMEKKGFESYHSSSI 65
Query: 917 LGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLNG 976
LGR+Y D T + Q+C Q+
Sbjct: 66 LGRIY------------------------------------DETEEIIAQQCDEQIQITT 89
Query: 977 LLGQYNVNRKEFRHIWSMPKYNSRKQGELQERLKHSYSAF---RKEFRQVFEKMNSDF-- 1031
L F + S P+ S + QE L S F ++E F+K+ +
Sbjct: 90 LAC--------FSEVESTPECTSLWEHRYQEYLTKSRGLFDLGKEEKNDEFQKLYQHYKH 141
Query: 1032 ELSDNEKNVLYEQKASAWYQVTYHREWVKKSL 1063
E S + +V E A A Y++ Y R W +S+
Sbjct: 142 ETSRDLSDVFME--ACAIYRIVYERAWCTRSV 171
>gi|409052182|gb|EKM61658.1| hypothetical protein PHACADRAFT_135496 [Phanerochaete carnosa
HHB-10118-sp]
Length = 913
Score = 49.3 bits (116), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 712 GELKECQCFIQVSESSLE---NCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRIL 768
G+L+E + + + S + E N + H ++ G ++ +NP DVR +
Sbjct: 483 GKLRENEIYFRSSTLAFEDSPNIYDCH-----------LMLGDCLLYRNPARLASDVRKV 531
Query: 769 EAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
AVD PEL D +V P KG + +G D+DGD WD L+ P
Sbjct: 532 RAVDVPELVLYKDVIVVPCKGPVSLPSMLAGGDVDGDTAVCIWDPALVKP 581
>gi|409047033|gb|EKM56512.1| hypothetical protein PHACADRAFT_118286 [Phanerochaete carnosa
HHB-10118-sp]
Length = 965
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLY 807
+ G V+I +NP P DV+ + AV RPE D ++ P KG R + +G D DGD+
Sbjct: 576 VVGDVLIYRNPARVPSDVQKVRAVCRPEYADYLDVIILPTKGRRSLASLLAGGDYDGDVA 635
Query: 808 YVTWDENLI 816
+D ++
Sbjct: 636 TCIFDPQIV 644
Score = 43.1 bits (100), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 36/187 (19%)
Query: 456 VKSILSDGFNLCGRRYSFLAFSSNQL-----------------RDHSAWFFSKVGE-TSV 497
+K LS F LCGR + A ++ DH + K+ E +
Sbjct: 163 LKDFLSHKFVLCGRVFVSFAVKDQKIYLVETDEDFERTADRKKGDHLRYSLEKLIEWYNP 222
Query: 498 LDIKNWMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEV----DHELPDIKRN---GYV 550
LD+ + +N++KYAAR L S++ +E P + D E P +
Sbjct: 223 LDLND------KQNLSKYAARSDLALSTSSPVLEFDPRNIYMINDIEAPHTGGKVPPEKI 276
Query: 551 FSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWP---AKDDGIRMSLR 607
F+DG G + M V + + GS PP+A Q R G KGV P A R+ +R
Sbjct: 277 FTDGCGFMNGAALMRVGKWIG-SGS-PPTAVQGRILGSKGVWLLHPDDRAPTAEPRIWIR 334
Query: 608 GSMKKFK 614
S +K +
Sbjct: 335 PSQRKIR 341
>gi|341039071|gb|EGS24063.1| hypothetical protein CTHT_0007750 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 392
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 798 SGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHAD 857
SG DLDGDL++V WD L + P +E P + + I + AD
Sbjct: 110 SGGDLDGDLFHVIWDPALF----NAKPKLETFEPADYPRIPPLELEGEITIRDMANFFAD 165
Query: 858 RSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKY-PDFM 903
A D +C+ LAKLA++AV+ KTG+ V M K +++ PDF
Sbjct: 166 FKTILA-DPDCMKLAKLASSAVNLSKTGRPVDMTQLPKCRRWRPDFF 211
>gi|402576169|gb|EJW70128.1| hypothetical protein WUBG_18968 [Wuchereria bancrofti]
Length = 123
Score = 48.9 bits (115), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 543 DIKRNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD 599
D + Y FSDG+GK++ + A ++A + L G+ PS YQIR+ G KGV++ P D
Sbjct: 26 DTNQASYTFSDGVGKVSKEFAEKIAFDIGL-GTSVPSCYQIRHRGIKGVLSVDPNLD 81
>gi|403415588|emb|CCM02288.1| predicted protein [Fibroporia radiculosa]
Length = 1313
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 27/167 (16%)
Query: 689 IMLSAGFKPQT----EPHLQGML---------TYELGELKECQCFIQVSESSLENCFSKH 735
++L+AGF P E L G + ++ + + F+ ESS N +
Sbjct: 823 VLLAAGFMPDKLCVLEAKLNGTVKKAIQSNANSFHIEVPMSAKAFVVPGESSSRNLLALD 882
Query: 736 GSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGD----- 790
G + + I G V++ ++PC P D++ L +V L D +V KG
Sbjct: 883 G------QWMDQILGEVIVTRHPCKTPTDMQKLVSVFNNRLIRFVDVIVVSVKGHLFNNE 936
Query: 791 ---RPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAK 834
R + G D DGD V WD LI + + P P E +
Sbjct: 937 FLPRHLASMTGGGDYDGDTVEVYWDPRLIENFRNANPNFAKEPPEVQ 983
>gi|389742384|gb|EIM83571.1| hypothetical protein STEHIDRAFT_101865 [Stereum hirsutum FP-91666
SS1]
Length = 987
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 38/175 (21%)
Query: 745 LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDG 804
+ ++ G +I +NP P D++ + AV RP+ D ++ KG +G D DG
Sbjct: 565 ISILEGPCLIGRNPARLPSDIQKVTAVYRPQYKEYKDVIICSIKGKVSAAFPLAGGDYDG 624
Query: 805 DLYYVTWDENLIPPSKKS----CPP--------MECTPAEA------------------- 833
D + W ++ P + PP + P +
Sbjct: 625 DRALLQWSPTVVEPFSRPYAEVVPPPPNFIEDHFDSEPEKVAAFHDRVAAMSSRERNHEV 684
Query: 834 -KPLTCHVNHQNLGQICNAH--VVHADRSEYGAFDENCILLAKLAATAVDSPKTG 885
K L +N +G+ N H V+A YG D ILLA L T +DS K+G
Sbjct: 685 IKVLLRALNDSKVGKYSNFHDNAVYA----YGYDDPRSILLAYLFTTLLDSNKSG 735
>gi|389740949|gb|EIM82139.1| hypothetical protein STEHIDRAFT_161484 [Stereum hirsutum FP-91666
SS1]
Length = 1302
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
G LKE + I+ S +L+ + + + + G V+++++PC P DV+ + AV
Sbjct: 744 GTLKEGEIHIRSSAPNLKG---------QDGQLTEQVLGPVLVSRHPCKLPTDVQKVTAV 794
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCP 824
+L D +VF KG R + D DGD WD + P + + P
Sbjct: 795 YYSQLEKYVDVIVFSTKGCRSLASMLGTGDYDGDKVEAVWDPEIAGPFRNADP 847
>gi|328855319|gb|EGG04446.1| hypothetical protein MELLADRAFT_117081 [Melampsora larici-populina
98AG31]
Length = 789
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
G LKE + F+Q+S F + +QV+ G ++A++PC+ P D R + AV
Sbjct: 511 GTLKEGEVFLQLSH------FVDQDTALP----IQVLRGECIVARSPCVHPCDARKVTAV 560
Query: 772 DRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPP 818
L D LV G+R + SG GD V WD ++ P
Sbjct: 561 ANQNLVRYDDVLVCSVLGERSLLDYLSG----GDTVTVIWDPHITEP 603
>gi|328850109|gb|EGF99278.1| hypothetical protein MELLADRAFT_79506 [Melampsora larici-populina
98AG31]
Length = 1048
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC-DCLVFPQKGDRPHTNEASGSDLDGD 805
++ +I ++PC P D++ + V +L L D LV +G R + SG D DGD
Sbjct: 560 ILARHALIWRSPCAAPIDIQKVRLVANEQLQRLYFDVLVCSTRGGRAVLSLLSGGDYDGD 619
Query: 806 LYYVTWDENLIPPSKKSCP 824
VTWD+ L+ P + + P
Sbjct: 620 QVAVTWDKRLVDPFQNADP 638
>gi|390599418|gb|EIN08814.1| hypothetical protein PUNSTDRAFT_44349 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1065
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 31/115 (26%)
Query: 767 ILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPM 826
+++AV RP LH + +V KGDR + +G D DGD +VTWD ++ P K
Sbjct: 742 LVKAVYRPALHRYTNQIVISVKGDRSLASILAGGDYDGDKCFVTWDPAIVEPFK------ 795
Query: 827 ECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSE--YGAFDENCILLAKLAATAV 879
NAH+ +AD + AF++N I +A+L ++
Sbjct: 796 -----------------------NAHLRYADPPDGFEDAFEKNPISVAELEPASI 827
>gi|402219719|gb|EJT99791.1| hypothetical protein DACRYDRAFT_100977 [Dacryopinax sp. DJM-731
SS1]
Length = 1204
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVI--AKNPCLRPGDVRILE 769
G+LK + F+Q + +T+ ++++ G V++ + G V ++
Sbjct: 777 GKLKPGEIFVQF----------RREYDVTDTESMKILTGDVLLLYQEKKFYAEGIVIKMK 826
Query: 770 AVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT 829
AVD ELH++ D +V +G+R + G D DGD V W+ ++ P K + P
Sbjct: 827 AVDIDELHYMYDVIVMSTEGERSPASMLGGGDYDGDRATVIWEPQIVEPFKTADPKFADQ 886
Query: 830 P 830
P
Sbjct: 887 P 887
>gi|361124327|gb|EHK96429.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 900
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++A++P D++ ++AV + EL L D +VF KG+ + SG D DGDL ++ W
Sbjct: 486 VLVARSPAHFVSDIQKVKAVAKVELIGLKDVIVFSTKGNPSLAAKLSGGDYDGDLAWLCW 545
Query: 812 DENLI 816
+ +++
Sbjct: 546 EPSIV 550
>gi|443921571|gb|ELU41160.1| RdRP domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 1096
Score = 46.2 bits (108), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Query: 745 LQVINGFVVIAKNPCLRPGDVRILE-----------------AVDRPEL--HHLCDCLVF 785
+ + G V++++NPC+ P D+R + AV+ PEL D +VF
Sbjct: 723 ISTVLGPVLVSRNPCILPSDMRKVSTEGICGEIRAYSCSQVIAVECPELWAAGYTDVIVF 782
Query: 786 PQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
KG+R + +G D DGD + W+E L+
Sbjct: 783 SVKGERSLASMLAGGDYDGDTAILIWEEALV 813
>gi|353241842|emb|CCA73629.1| hypothetical protein PIIN_07582 [Piriformospora indica DSM 11827]
Length = 1021
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 740 AETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASG 799
+ + + G V+I ++P L P D++ + + L ++ +G RP + SG
Sbjct: 621 GDNRAVDFTKGEVLIGRHPALLPTDIQKVRLANITSLKQKRGLIICSTQGSRPLADLLSG 680
Query: 800 SDLDGDLYYVTWDENLIPPSKKSCPPMECTPAE 832
D DGD + WD N++ + + + PAE
Sbjct: 681 GDYDGDEAIIIWDRNVVNAFQNADTQLSFKPAE 713
Score = 42.4 bits (98), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Query: 512 IAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKIT-PDLAMEVAQIL 570
I K A R+ L S T P E+ + DIKR+GYVF+DG G+++ P L A+
Sbjct: 289 ICKLATRLHLGVSDTSPG---PLVEMIYVEDDIKRDGYVFTDGSGEVSGPLLRRFRAKCP 345
Query: 571 KLDGSPPPSAYQIRYAGYKGVVACWPAKD---DGIRMSLRGSMKKFKSCHTSLEICSWTR 627
+ SAYQIR + KG+V + D M + SM K K L R
Sbjct: 346 QARNE--ASAYQIRISTAKGIVQVAESPDVHRPPQWMKVTRSMIKAKHGEGKL-----PR 398
Query: 628 FQPGFLN--RQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN 685
P LN R + + + + W A ++ +L +L V E+L A+ E+ +
Sbjct: 399 DGPLLLNGFRILDAAHFVVCIVQDASWRYPAQLSKQLIPILHHQGVPVEML-ATFLEK-D 456
Query: 686 TAAIMLSAGFKP 697
+ MLS +P
Sbjct: 457 ISETMLSLKLQP 468
>gi|336365378|gb|EGN93729.1| hypothetical protein SERLA73DRAFT_163465 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1089
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 711 LGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEA 770
G LKE + + SES L N + G++F + G V++ +NP P D++ + A
Sbjct: 733 FGVLKEGEIHFRSSES-LTNPAT--GAQF------DTVRGEVLVTRNPTRLPSDIQKVTA 783
Query: 771 VDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKS 822
V P+L + +VF KGDR + G GD + W + L+ K S
Sbjct: 784 VSHPKLDNYYGVIVFSTKGDRSLASWLGG----GDTVTLIWSKPLVDSFKNS 831
>gi|395331410|gb|EJF63791.1| hypothetical protein DICSQDRAFT_55194 [Dichomitus squalens LYAD-421
SS1]
Length = 1069
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 712 GELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAV 771
G LK + ++ S +L + H R + ++ G V++ ++PC P DV+ ++AV
Sbjct: 619 GVLKANEVHVRSSRRNLPD----HQGRLTD-----LVLGDVLVTRHPCKVPSDVQKVKAV 669
Query: 772 DRPELHHLCDCLVFPQKG--------DRPHTNEASGSDLDGDLYYVTWDENLI 816
L H CD +V + +R + G D DGD V WD +++
Sbjct: 670 FHERLRHYCDVIVVSTESQTFRGEPLNRHLASLTGGGDYDGDTMEVFWDPDIV 722
>gi|403364990|gb|EJY82270.1| RNA-dependent RNA polymerase [Oxytricha trifallax]
Length = 126
Score = 45.1 bits (105), Expect = 0.22, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 517 ARMGLCFSSTHATVEIPPTEVDHELPDI--KRNGYVFSDGIGKITPDLAMEVAQILKLDG 574
AR F+ T E+ T++++ + DI R G F+DG G I+ +LA + ++ L+
Sbjct: 12 ARAAQLFTGTRYICELKKTQIEY-IGDIVNYRKGN-FTDGNGCISQELANRINRMYGLED 69
Query: 575 SPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEI 622
SAYQ R G KG + + + + +R +MKKF++ TSL I
Sbjct: 70 C---SAYQFRLGGCKGTLVVNQELQEEV-IQIRNTMKKFENSDTSLNI 113
>gi|224093872|ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
gi|222852931|gb|EEE90478.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
Length = 189
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 35/172 (20%)
Query: 884 TGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
T K + +P LK + +P FM E +TY+S ILG++Y ++K D ++S S++V P
Sbjct: 6 TLKQIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLS-SNDVWKLPC 64
Query: 944 DIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKEFRHIWSMPKYNSRKQG 1003
+D ++ V + GL GQY R E R+ K K
Sbjct: 65 ---FDGEVHESCLVKW---------------KGLYGQY---RTEMRNALQAGK---EKNN 100
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYH 1055
E E + K+++++ + ++F LS ++E+ A A YQVTY+
Sbjct: 101 EANEVI--------KKYKEILYEA-AEFNLSRRRDEEIFEE-ARALYQVTYN 142
>gi|403414080|emb|CCM00780.1| predicted protein [Fibroporia radiculosa]
Length = 1620
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 39/164 (23%)
Query: 686 TAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCF---IQVSES---------------- 726
T ++L AGF P+T P L L + + I+VS+S
Sbjct: 1106 TVMVLLDAGFNPKTCPVLAAKLKEVVKRVITTMVRKYQIEVSQSLSAVIVPDPCNVLRPG 1165
Query: 727 ------SLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
S N + G K+ +I G V++ ++PC P DV+ ++AV +L +
Sbjct: 1166 EIHVKSSQRNLVDQDG------KRTDIILGDVLVTRHPCKVPTDVQKVQAVYHEKLRNYV 1219
Query: 781 DCLVFPQKG--------DRPHTNEASGSDLDGDLYYVTWDENLI 816
D +V K +R + G D DGD+ V W L+
Sbjct: 1220 DVIVVSTKDHIYGNKLLNRHLASCTGGGDYDGDMMEVFWKRELV 1263
>gi|237843439|ref|XP_002371017.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|211968681|gb|EEB03877.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|221502280|gb|EEE28013.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 1186
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 828 CTPAEAKPLTCHVNHQN---LGQICNAHVVHADRSE-YG--------AFDENCILLAKLA 875
C P+ A + ++ Q LG++ AH+ A R + YG A C+ LA LA
Sbjct: 1043 CLPSLASRVDHFIHVQKSCVLGRVSKAHMRLAHRPDIYGQRNWRQAKALHPKCLKLAALA 1102
Query: 876 ATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKG---AYDENI 932
AVD+P+TG +V MP L ++ P FM ++N R+ A E +
Sbjct: 1103 TLAVDAPQTGAVVVMPQELACRQIPHFMATAAVSQAEANLPPCHERRRCDDCLHALLEKV 1162
Query: 933 SVSSEVDINP-VDIHYDTDLEV 953
SV ++P ++H +TD+ +
Sbjct: 1163 SVGCSARLHPYTELHLETDVHM 1184
>gi|170084677|ref|XP_001873562.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651114|gb|EDR15354.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1268
Score = 44.3 bits (103), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
V+ G VV+ + P P D++ + AVD PEL + D ++ KG + SG D DGD
Sbjct: 874 VLQGEVVLGRYPIRLPSDMQKVTAVDIPELFNWPDVIIVSTKGKFSLASLLSGGDQDGDE 933
Query: 807 YYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQNLGQICNAHVVHADRSEYGAFDE 866
V D+ ++ K P+ P+ +++ C + + + + AF E
Sbjct: 934 LLVIKDKLIVDSFKNQ--PLTVIPSGLMESDFEREVESVPDFCCRALSLEEAASHKAFQE 991
Query: 867 NCILLAKLAATAV 879
+LL L + V
Sbjct: 992 --VLLLNLNVSQV 1002
>gi|449541903|gb|EMD32884.1| hypothetical protein CERSUDRAFT_142953, partial [Ceriporiopsis
subvermispora B]
Length = 125
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 459 ILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNW-MGEF-TAKNIAKYA 516
+ G L G +Y F S++QLR F + LD K + +G+F AK A
Sbjct: 4 LFQAGLMLNGVQYRFYGHSNSQLRSRGC-FLREANTDDELDEKIYSLGDFHRIMTAAKRA 62
Query: 517 ARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
R+GL FS + P ++ DI NG FSDG G ++ A +V++
Sbjct: 63 KRIGLLFSQAELDWVLDPRHTK-DIDDIVVNGENFSDGCGLMSKRFATQVSR 113
>gi|408393216|gb|EKJ72482.1| hypothetical protein FPSE_07363 [Fusarium pseudograminearum CS3096]
Length = 218
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 460 LSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARM 519
L G + G Y+F ++QL+ S + + E L I++ K + K A +
Sbjct: 123 LRAGITVNGVHYNFYGHINSQLKSRSCFLLAATKEEISLQIESLEDFTKMKTVGKKAKCI 182
Query: 520 GLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIG 556
GL FSS + P + ++PD++ Y+F+ G+
Sbjct: 183 GLLFSSAKTAMTTNPDRCE-DIPDVETVDYIFTMGVA 218
>gi|290977359|ref|XP_002671405.1| predicted protein [Naegleria gruberi]
gi|284084974|gb|EFC38661.1| predicted protein [Naegleria gruberi]
Length = 283
Score = 43.5 bits (101), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 765 VRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI 816
+R+ +AV + L HL D +VF G + SG+DLDGD +Y+ WD L+
Sbjct: 1 MRLFQAVKKDCLTHLKDVVVFSSLGPEFVPSLISGADLDGDHFYIFWDSELV 52
>gi|219666784|ref|YP_002457219.1| chaperonin Cpn60/TCP-1 [Desulfitobacterium hafniense DCB-2]
gi|19421906|gb|AAL87794.1|AF403184_19 putative GroEL-type chaperonin [Desulfitobacterium hafniense DCB-2]
gi|219537044|gb|ACL18783.1| chaperonin Cpn60/TCP-1 [Desulfitobacterium hafniense DCB-2]
Length = 523
Score = 43.1 bits (100), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 8/194 (4%)
Query: 565 EVAQILKLDGSPPPS----AYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSL 620
+VAQ+ + P A + G++G++ K + ++ + K C T
Sbjct: 142 QVAQVGAISSGDPALGKLLAEAVGKVGFQGIITIEEGKGLQPYLEIKHGISFNKGCFTPK 201
Query: 621 EICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASC 680
+ SW R + I+ + L+ +DEIF +Q ++ + L+L+A D+ ++L
Sbjct: 202 IVKSWERKSEALTDAFILIVDGRLSTADEIFAVLQLTVKYEKPLLLIAEDIGIDLLALLL 261
Query: 681 A--EQGNTAAIML-SAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGS 737
A ++G A+ + S G + + +LQ + G + + I + E + E+ + G
Sbjct: 262 ANKQKGTMNAVAVQSPGSGERRKEYLQDIAILTGGTVIGEENGIILEEVTEEH-LGRAGK 320
Query: 738 RFAETKKLQVINGF 751
A+ +I G
Sbjct: 321 ILADNNSTTIIGGM 334
>gi|302413491|ref|XP_003004578.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357154|gb|EEY19582.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 99
Score = 42.7 bits (99), Expect = 1.0, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 776 LHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIP 817
L L +C+VF Q GD+ ++ SG DL+GD Y + WD P
Sbjct: 10 LRDLRNCIVFSQHGDQDLPSQLSGGDLNGDQYNIIWDRQACP 51
>gi|242048810|ref|XP_002462151.1| hypothetical protein SORBIDRAFT_02g020720 [Sorghum bicolor]
gi|241925528|gb|EER98672.1| hypothetical protein SORBIDRAFT_02g020720 [Sorghum bicolor]
Length = 84
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 894 LKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEV 953
L+P+++PDFME E Y SN +L +LYR ++EN + + + P YD D+EV
Sbjct: 5 LRPQEFPDFMEQWERPMYVSNSVLDKLYRAALW-HEEN--TEALLPVPPPSSMYDPDVEV 61
Query: 954 PGSVDFTADARNQKCSYDGQLN 975
G A Q +Y +L
Sbjct: 62 AGFDKHLDTAEKQYRAYAERLG 83
>gi|402576653|gb|EJW70611.1| hypothetical protein WUBG_18482, partial [Wuchereria bancrofti]
Length = 59
Score = 42.7 bits (99), Expect = 1.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 469 RRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFTAKNIAKYAARMGLCFS 524
R + +L S++Q+RD+ +F+ I+ +G+F + NI K +RMG CF+
Sbjct: 1 RHFVYLGSSNSQMRDNGCYFYDDGKGGQAHKIREQLGKFDSCNIPKMMSRMGQCFT 56
>gi|392570629|gb|EIW63801.1| hypothetical protein TRAVEDRAFT_138069 [Trametes versicolor
FP-101664 SS1]
Length = 1030
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 747 VINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDL 806
++ G V+I +NP P DV+ + AV L D +V P +G + +G D DGD+
Sbjct: 614 ILLGDVLIYRNPNRLPSDVQKVTAVQHELLADYADVIVLPSRGPCSFASMLAGGDYDGDV 673
Query: 807 YYVTWDENLIPPSKKSCPPMECTPA 831
+D L+ S P+ PA
Sbjct: 674 CVCIYDPRLVRDFNNS--PLSQAPA 696
>gi|402576412|gb|EJW70371.1| hypothetical protein WUBG_18723 [Wuchereria bancrofti]
Length = 87
Score = 41.2 bits (95), Expect = 3.3, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 895 KPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDE-NISVSSEVDINPVDIHYDTDLEV 953
+ +++PDFM +Y S++++G+LYR+I+ D N+++ E +I I D DLE
Sbjct: 6 RAERWPDFMCKNHEPSYISSRLVGQLYRRIRLLDDALNLTIVMEENI---PIMLDPDLEY 62
Query: 954 PGSVDFTADARNQKCSY 970
PG + A++Q SY
Sbjct: 63 PGWERYQNIAKSQFDSY 79
>gi|242208189|ref|XP_002469946.1| predicted protein [Postia placenta Mad-698-R]
gi|220731008|gb|EED84857.1| predicted protein [Postia placenta Mad-698-R]
Length = 1427
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 39/164 (23%)
Query: 686 TAAIMLSAGFKPQTEPHLQGMLT-------------YELGELKECQCFI----------- 721
T ++L +GFKP T P L L Y + + C +I
Sbjct: 637 TVLVLLDSGFKPDTCPVLAAKLKEVVKRAINSYVRRYRVDVPQSCTAYIVPDPLGVLEPG 696
Query: 722 QVS-ESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLC 780
QV +SS N + G + ++ G V++ ++PC P DV+ + AV +L
Sbjct: 697 QVHIKSSRRNLVDQDG------RPTDIVLGEVLVTRHPCKVPTDVQKVTAVFNQKLSSYV 750
Query: 781 DCLVFPQKG--------DRPHTNEASGSDLDGDLYYVTWDENLI 816
D +V K +R + G D DGD W+ +L+
Sbjct: 751 DVIVVSIKDHVSNKKLMNRHLASCTGGGDYDGDTMEAFWNSDLV 794
>gi|158299141|ref|XP_319244.3| AGAP010086-PA [Anopheles gambiae str. PEST]
gi|157014226|gb|EAA14606.3| AGAP010086-PA [Anopheles gambiae str. PEST]
Length = 568
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 475 AFSSNQLRDHSAWFFSKVGETSVLDIKNWM--GEFTAKNIAKYAARMGLCFSSTHATVEI 532
A +S + +H+ F+++ + D+ W +T K + + R+G+CF+S +
Sbjct: 202 ARNSPNMHEHAMNIFARMENGTADDLDQWQEYRAYTVKELEELYRRLGVCFTSYEWESQY 261
Query: 533 PPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQILKLDGS 575
++ H L +K++G + G+ L I+K DGS
Sbjct: 262 GVNKIAHVLETLKQHGLLIDQPDGRKVVQLQQRKMPIVKSDGS 304
>gi|221481781|gb|EEE20151.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 1186
Score = 41.2 bits (95), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 16/142 (11%)
Query: 828 CTPAEAKPLTCHVNHQN---LGQICNAHVVHADR---------SEYGAFDENCILLAKLA 875
C P+ A + ++ Q LG++ AH+ A R + A C+ LA LA
Sbjct: 1043 CLPSLASRVDHFIHVQKSCVLGRVSKAHMRLAHRPDIYWQRNWRQAKALHPKCLKLAALA 1102
Query: 876 ATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKG---AYDENI 932
AVD+P+TG +V MP L ++ P FM ++N R+ A + +
Sbjct: 1103 TLAVDAPQTGAVVVMPQELACRQIPHFMATAAVSQAEANLPPCHERRRCDDCLHALLDKV 1162
Query: 933 SVSSEVDINP-VDIHYDTDLEV 953
SV ++P ++H +TD+ +
Sbjct: 1163 SVGCSARLHPYTELHLETDVHM 1184
>gi|238580064|ref|XP_002389180.1| hypothetical protein MPER_11728 [Moniliophthora perniciosa FA553]
gi|215451163|gb|EEB90110.1| hypothetical protein MPER_11728 [Moniliophthora perniciosa FA553]
Length = 317
Score = 40.8 bits (94), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 839 HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPK- 897
++ H LG + + AD++ F+ +C+ +A L + AVD PK+G V P PK
Sbjct: 11 YITHDVLGMVSINWRILADQT--NIFNPDCMKMAALHSLAVDYPKSGNPV--PIQDIPKR 66
Query: 898 ---KYPDFMEIEEYQT------YKSNKILGRLYRQIKGAYDENI 932
K PD+ E T Y S K +G+L+R I +N+
Sbjct: 67 SNEKLPDWYAPETMYTLDTSKYYPSQKAIGKLFRAIALDAPQNV 110
>gi|255546343|ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223546687|gb|EEF48185.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 114
Score = 40.8 bits (94), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 748 INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLD 803
I+G V++ +NP L GD+ +L+A L + FP KG + +E +G D +
Sbjct: 28 ISGKVLVYRNPGLHFGDIHVLKATYVKALEDFVGNAKYAIFFPCKGPQSLADEIAGGDFN 87
Query: 804 GDLYYVT 810
D+Y+V+
Sbjct: 88 NDMYFVS 94
>gi|389602082|ref|XP_001566538.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505311|emb|CAM40050.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1961
Score = 40.0 bits (92), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 669 SDVAFEVLTASCAEQGNTAAIMLSAGFKPQT--EPHLQGMLTYELGELKECQCFIQVSES 726
+ V +L A EQG + + A + + LQG+L LGEL+ C + V +
Sbjct: 1686 ASVQENLLAALTKEQGKPLTVYVEAALRSSDAHQQRLQGILHGSLGELR---CGMAVLRT 1742
Query: 727 SLENCFSKHGSRFAETKKLQVINGFVVIA-KNPCLRP 762
+ENC+ +G A Q + V+A +N LRP
Sbjct: 1743 QVENCWDLYGRPMANAAAQQFMEATEVLALENNMLRP 1779
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,543,880,238
Number of Sequences: 23463169
Number of extensions: 746542774
Number of successful extensions: 1578385
Number of sequences better than 100.0: 777
Number of HSP's better than 100.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1573089
Number of HSP's gapped (non-prelim): 1727
length of query: 1117
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 963
effective length of database: 8,745,867,341
effective search space: 8422270249383
effective search space used: 8422270249383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)