BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048783
(1117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 150/365 (41%), Gaps = 71/365 (19%)
Query: 514 KYAARMGLCFSSTHATVEIPPTEVDHELPDI---KRNGYVFSDGIGKITPDLAMEVAQIL 570
K +R+ L S T+A + + P ++ H D+ G V +DG+G+++ +A + +L
Sbjct: 287 KLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVL 346
Query: 571 KLDGSPPPSAYQIRYAGYKGV-------------VACWPAK--------DDGIR-MSLRG 608
L P SA Q R+ KG+ + +P++ D R + +R
Sbjct: 347 GLGDVP--SAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRS 404
Query: 609 SMKKFKSCHTSLEIC--------SWTRFQPGF-------LNRQIITLLSTLNVSDEIFWT 653
+ KS +L++ + + L RQ LN E
Sbjct: 405 VASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQW 464
Query: 654 VQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGE 713
V S +S+ + S L Q T ++++GF P+ + +LQ + ++L +
Sbjct: 465 VYESYSSRATRV---SHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQD-IAWDLQK 520
Query: 714 LK----ECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGF------------------ 751
K + + I+V S+ + E +V GF
Sbjct: 521 RKCDTLKSKLNIRVGRSAYIYMIADFWGVLEEN---EVHVGFSSKFRDEEESFTLLSDCD 577
Query: 752 VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTW 811
V++A++P P D++ + AV +PELH L D ++F KGD P + SG D DGD+ +V W
Sbjct: 578 VLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCW 637
Query: 812 DENLI 816
D ++
Sbjct: 638 DPEIV 642
>pdb|4HST|B Chain B, Crystal Structure Of A Double Mutant Of A Class Iii
Engineered Cephalosporin Acylase
Length = 543
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 879 VDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEV 938
V P G IVT + + +PD++ + + Y++ +I+ RL A D+ ++ ++
Sbjct: 230 VIDPPGGIIVTANNRVVADDHPDYLCTDCHPPYRAERIMKRLVANPAFAVDDAAAIHADT 289
Query: 939 DINPVDIHYDTDLEVPGSVDFTA--DARNQKCSYDGQLNG---LLGQYNVNRKEFRHIWS 993
++P LE G+ D +A R ++DG+++ + YN R+ +
Sbjct: 290 -LSPHVGLLRRRLEALGARDDSAAEGLRQMLVAWDGRMDAASEVASAYNAFRR------A 342
Query: 994 MPKYNSRKQGELQERLKHSYSA 1015
+ + + + G L++ + H ++A
Sbjct: 343 LTRLVTDRSG-LEQAISHPFAA 363
>pdb|4HSR|B Chain B, Crystal Structure Of A Class Iii Engineered Cephalosporin
Acylase
Length = 543
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 879 VDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEV 938
V P G IVT + + +PD++ + + Y++ +I+ RL A D+ ++ ++
Sbjct: 230 VIDPPGGIIVTANNRVVADDHPDYLCTDCHPPYRAERIMKRLVANPAFAVDDAAAIHADT 289
Query: 939 DINPVDIHYDTDLEVPGSVDFTA--DARNQKCSYDGQLNG---LLGQYNVNRKEFRHIWS 993
++P LE G+ D +A R ++DG+++ + YN R+ +
Sbjct: 290 -LSPHVGLLRRRLEALGARDDSAAEGLRQMLVAWDGRMDAASEVASAYNAFRR------A 342
Query: 994 MPKYNSRKQGELQERLKHSYSA 1015
+ + + + G L++ + H ++A
Sbjct: 343 LTRLVTDRSG-LEQAISHPFAA 363
>pdb|2DSN|A Chain A, Crystal Structure Of T1 Lipase
pdb|2DSN|B Chain B, Crystal Structure Of T1 Lipase
Length = 387
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 42 RLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAF-VHFATSTYITRAMDAAEHMELF 100
RLK S + + + +V+ +K + + + P+ + + F+T A+ + EL
Sbjct: 226 RLKRSPVWTSTDTARYDLSVSGAEKLNQWVQASPNTYYLSFSTERTYRGALTGNHYPELG 285
Query: 101 LNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFL 160
+N + V PF + R T L + D ++E +V VS GP G+
Sbjct: 286 MNAFSAVVCA----PFLGSYRNPT---LGIDDRWLENDGIVNT----VSMNGPKRGSSDR 334
Query: 161 VDPFDGTCK 169
+ P+DGT K
Sbjct: 335 IVPYDGTLK 343
>pdb|2Z5G|A Chain A, Crystal Structure Of T1 Lipase F16l Mutant
pdb|2Z5G|B Chain B, Crystal Structure Of T1 Lipase F16l Mutant
Length = 387
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 42 RLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAF-VHFATSTYITRAMDAAEHMELF 100
RLK S + + + +V+ +K + + + P+ + + F+T A+ + EL
Sbjct: 226 RLKRSPVWTSTDTARYDLSVSGAEKLNQWVQASPNTYYLSFSTERTYRGALTGNHYPELG 285
Query: 101 LNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFL 160
+N + V PF + R T L + D ++E +V VS GP G+
Sbjct: 286 MNAFSAVVCA----PFLGSYRNPT---LGIDDRWLENDGIVNT----VSMNGPKRGSSDR 334
Query: 161 VDPFDGTCK 169
+ P+DGT K
Sbjct: 335 IVPYDGTLK 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,514,486
Number of Sequences: 62578
Number of extensions: 1347502
Number of successful extensions: 2818
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2812
Number of HSP's gapped (non-prelim): 10
length of query: 1117
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1008
effective length of database: 8,152,335
effective search space: 8217553680
effective search space used: 8217553680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)