BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048783
(1117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 1432 bits (3707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1195 (62%), Positives = 884/1195 (73%), Gaps = 81/1195 (6%)
Query: 2 EEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENV 61
E K SV TQVS+GGF A L YLE+EVG VWRCRLKTS TP SYPNF I +
Sbjct: 4 EGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADT 63
Query: 62 AEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQR 121
+ + D+Y+KVEPHAFVHFA RAMDAA L L+G+ LKVSLGP+NP+ LNQR
Sbjct: 64 SNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQR 123
Query: 122 GGTSAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALK 181
T+ P KL + +EIG+LV++D+FFVSWR A G DFLVDPFD TCKFCF K TAF+ K
Sbjct: 124 RRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAFSFK 181
Query: 182 SSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPF 240
+ HAVI C++K+ LVR+I V+QY L ++L LASSPR+ YRTA DDI VP
Sbjct: 182 DAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPG 241
Query: 241 DLLDDDDPWIRTTDFSPSGAIGQCNS---------------------KQRVQEDCLSQPV 279
DLLDDDDPWIRTTDF+ GAIG+C+S +RVQE+ + P
Sbjct: 242 DLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPP 301
Query: 280 TIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQPR 339
IR EP F PV D FFC+H+KEG+SFEIMFLVN+V+H+G+ NQ QL++ FFDLLR QP+
Sbjct: 302 RIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPK 361
Query: 340 EVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKA 399
+V + +LKH+ +YKRPVFDAY++LK VQE + KNPKL + +DI+E+RRLVITPT+A
Sbjct: 362 DVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRA 421
Query: 400 YWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQ 448
Y K VA+RFLRVTFMDE +QT+N+NVLSY+VAPIVKD+TS+SFSQ
Sbjct: 422 YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 481
Query: 449 KTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508
KT VFKRVKSIL+DGF LCGR+YSFLAFS+NQLRD SAWFF++ G+T V DIK WMG+F
Sbjct: 482 KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFK 541
Query: 509 AKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAMEVAQ 568
KN+AK AARMGLCFSST+ATV++ P EVD E+PDI+RNGYVFSDGIG ITPDLA EV +
Sbjct: 542 DKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLADEVME 601
Query: 569 ILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRF 628
LKLD P AYQIRYAG+KGVVA WP+K DGIR++LR SMKKF S HT LEICSWTRF
Sbjct: 602 KLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRF 661
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA 688
QPGFLNRQIITLLS L V DEIFW +Q SM KLN +L +DVAFEVLTASCAEQGNTAA
Sbjct: 662 QPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAA 721
Query: 689 IMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKECQCF 720
IMLSAGFKP+TEPHL+GML+ E G L+ QCF
Sbjct: 722 IMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCF 781
Query: 721 IQVSESSLENCFSKHGSRFAETKK-LQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHL 779
IQVS+ S+ENCFSKHGSRF ETK L+V+ G+V IAKNPCL PGDVRILEAVD P+LHH+
Sbjct: 782 IQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHM 841
Query: 780 CDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCH 839
DCL+FPQKGDRPHTNEASGSDLDGDLY+V WD+ LIPP++KS P M AE K L
Sbjct: 842 YDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRA 901
Query: 840 VNHQN-------------LGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGK 886
VNHQ+ LG ICNAHVVHADRSEYGA DE C+LLA+LAATAVD PKTGK
Sbjct: 902 VNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGK 961
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIH 946
IV+MP HLKPK YPDFM E+YQTYKSNKILGRLYR++K YDE+ SSE +P I
Sbjct: 962 IVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIP 1021
Query: 947 YDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQG 1003
YD LE+PG D +A KC YDGQL GLLGQY V ++E HIWSMPKY S+KQG
Sbjct: 1022 YDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQG 1081
Query: 1004 ELQERLKHSYSAFRKEFRQVFEKMNSDFE-LSDNEKNVLYEQKASAWYQVTYHREWVKKS 1062
EL+ERLKHSY++ +KEFR+VFE+ D E LS+ EKN+LYE+KASAWY VTYH EWVKKS
Sbjct: 1082 ELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKS 1141
Query: 1063 LDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
L+L + + +LSFAWIA DYLARIKI+ +EM +I +KPV++LA+++A R+
Sbjct: 1142 LELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196
>sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp.
japonica GN=SHL2 PE=2 SV=1
Length = 1218
Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1198 (53%), Positives = 801/1198 (66%), Gaps = 96/1198 (8%)
Query: 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTD 68
V TQVS+GGFD + A DL +LE+EVG VWRCR+KTS TP +SYP+F +
Sbjct: 28 VTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASAA 87
Query: 69 D----YEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGT 124
Y++V PHAFVHFA RA D A L L G+ L+V+ P++ R+++R
Sbjct: 88 AAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSSI 147
Query: 125 SAPLKLPDVYVEIGSLVTQDEFFVSWRGPASGTDFLVDPFDGTCKFCFTKDTAFALKSSA 184
AP + PDV +E+G+L + F +WRGP +G D VDPFDG C+ FT+DTAF
Sbjct: 148 -APFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFR 206
Query: 185 EHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVLVPFDLL 243
E A I+C+ K+ F VR++ V+ Y ++LL LA++P + YRTA DD VPFDLL
Sbjct: 207 EVAAIRCDVKLEFPVRDVLEVRLYRL--DCSLLLRLAAAPLVHYRTADDDFHEPVPFDLL 264
Query: 244 DDDDPWIRTTDFSPSGAIGQCN---------------------SKQRVQ-EDCLS----- 276
DDDDPWIRTTD +PSGAIG+C ++RV DC
Sbjct: 265 DDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGPR 324
Query: 277 QPVTIREEPDFEVPVEDPFFCMHYKEGVSFEIMFLVNAVMHKGILNQHQLSDSFFDLLRC 336
+ +T+R+E +F P++D FFC+ + EG+ F ++F+VNA++HKGI+NQHQL+ FF LL
Sbjct: 325 RGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGR 384
Query: 337 QPREVIVTALKHIYSYKRPVFDAYEKLKDVQECLIKNPKLNEGPKNIDDIAEVRRLVITP 396
V V AL+ + K PVFDA +LK + +NPKL K DD AEVRRLVITP
Sbjct: 385 SEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKL-LCSKVGDDHAEVRRLVITP 443
Query: 397 TKAYWF-----------LESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNS 445
T+AY +VADRFLRVTFMDEG+Q +N NVL+ + APIVKD+ SN
Sbjct: 444 TRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNF 503
Query: 446 FSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMG 505
F QKT V+KRV+ +L++GF++CGR+YSFLAFSSNQLRD SAWFF++ +T+V I+ WMG
Sbjct: 504 FQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMG 563
Query: 506 EFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKRNGYVFSDGIGKITPDLAME 565
FT+KN+AK+AARMG CFSST+ATV + P EVD D+ N Y+FSDGIGKITPDLA+E
Sbjct: 564 RFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLALE 623
Query: 566 VAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSW 625
VA+ L+L + PPSAYQIR+AG+KGV+A W DG R+ LR SM+KF+S H LE+ SW
Sbjct: 624 VAERLQLTDN-PPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSW 682
Query: 626 TRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGN 685
T+FQPGFLNRQII LLS+LNV D IFW +Q +M S LN +L DVAFEVLT SCA+ GN
Sbjct: 683 TKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDGN 742
Query: 686 TAAIMLSAGFKPQTEPHLQGMLTY----------------------------ELGELKEC 717
TAA+MLSAGF+P+TEPHL+ ML ELG L++
Sbjct: 743 TAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQG 802
Query: 718 QCFIQVSESSLENCFSKHGSRFAET-KKLQVINGFVVIAKNPCLRPGDVRILEAVDRPEL 776
QCFI+ + SL + F KHGSRF+ T K +VI G VVIAKNPCL PGDVRILEAVD PEL
Sbjct: 803 QCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPEL 862
Query: 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL 836
HHL DCLVFPQKG+RPH NEASGSDLDGDLY+VTWDE LIPP KKS PM+ +P EAK L
Sbjct: 863 HHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQL 922
Query: 837 TCHVNH-------------QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPK 883
V+ +NLG+ICNAHVVHAD SEYGA DE CI LA+LAATAVD PK
Sbjct: 923 PRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPK 982
Query: 884 TGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPV 943
TGK+ MP HLKPK YPDFM E+ Q+YKS KILGRLYR I+ A + ++ VS EV P
Sbjct: 983 TGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDV-VSQEV-CTPN 1040
Query: 944 DIHYDTDLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSR 1000
D+ YD DLEVPG+ DF A A KCSYD QL+ LL QY V + HI + K +S+
Sbjct: 1041 DLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSK 1100
Query: 1001 KQGELQERLKHSYSAFRKEFRQVFEKMNSD-FELSDNEKNVLYEQKASAWYQVTYHREWV 1059
KQG++++RLK +YSA RKEF+ FE + SD E+ D+EKN+LYE KASAWYQVTYH +WV
Sbjct: 1101 KQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWV 1160
Query: 1060 KKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEMANIGKSKPVNNLARYVADRI 1117
+KS +L LSFAWI DYLARIK++C + KPV LA Y+++RI
Sbjct: 1161 EKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust.
Identities = 335/992 (33%), Positives = 501/992 (50%), Gaps = 156/992 (15%)
Query: 215 ILLWLASSPRICYRTAKDDIEVLVPFDLLD-----DDDPWIRTTDFSPSGAIGQCNSKQR 269
+++ + +P+I K+D + + F ++D D+ WIRTTDF+ S IGQ +
Sbjct: 169 LVIQVIGAPKIF---EKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAF-- 223
Query: 270 VQEDCLSQPVTIREEPDFE-----------------------------VPVEDPFFCMHY 300
CL PV + PDF VPV DP
Sbjct: 224 ----CLELPVHL-NVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDP------ 272
Query: 301 KEGVS--FEIMFLVNAVMHKGILNQHQLSDSFFDLLRCQP--REVIVTALKHIYSYKRPV 356
G S FEI+F +N ++ L+ L F+ LL + R +I L+ ++
Sbjct: 273 PPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECC 332
Query: 357 FDAYEKLKDVQECLIKNPKLNEGPK-NIDD-IAEVRRLVITPTKAYWFLESKDVADR--- 411
++ L+D + I KL P ++DD + + R+ +TP + Y+ +V++R
Sbjct: 333 YEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLR 392
Query: 412 --------FLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG 463
FLRV+F+DE L+ + + LS +S ++T ++ R+ S+L DG
Sbjct: 393 HYSKYINNFLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDG 442
Query: 464 FNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAARMGLC 522
+ +++ FLAFSS+QLR++SAW F+ + + I+ WMG+F +N+AKYAAR+G
Sbjct: 443 IVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQS 502
Query: 523 FSSTHATVEIPPTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPP 578
FSS+ T+ + E++ +PD++ YVFSDGIGKI+ + A +VA+ L P
Sbjct: 503 FSSSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLT-EFSP 560
Query: 579 SAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQII 638
SA+QIRY GYKGVVA P + ++SLR SM KF+S +T L++ +W+++QP ++NRQ+I
Sbjct: 561 SAFQIRYGGYKGVVAVDP--NSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLI 618
Query: 639 TLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKP 697
TLLSTL V+D +F Q + +L+ +L A E L + E N ++ G+KP
Sbjct: 619 TLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKP 678
Query: 698 QTEPHLQGML----TYELGELKECQCFIQVSESSLENCFS------------------KH 735
EP L ML +L EL+ S+ C +
Sbjct: 679 DAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP 738
Query: 736 GSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTN 795
G RF +I G VV+AKNPCL PGDVR+L+AV+ P L+H+ DC+VFPQKG RPH N
Sbjct: 739 GRRF-------IITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPN 791
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNH 842
E SGSDLDGD+Y+V WD+ L+PP ++ PM+ TP + L ++ +
Sbjct: 792 ECSGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVN 849
Query: 843 QNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDF 902
+LG I NAH AD+ AF + CI LAK +TAVD PKTG +P HL K+YPDF
Sbjct: 850 DSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDF 909
Query: 903 MEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTAD 962
ME + TY+S ++G+L+R++K IS+ S ++ YD D+EV G ++ +
Sbjct: 910 MEKPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVASKSYDKDMEVDGFEEYVDE 968
Query: 963 ARNQKCSYDGQLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKE 1019
A QK +YD +L L+ Y + + I M K ++++ E + + A RKE
Sbjct: 969 AFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKE 1026
Query: 1020 FRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSF 1079
+F KASAWY VTYH + L +G R LSF
Sbjct: 1027 TLSLFNASEE---------EENESAKASAWYHVTYHSSY----WGLYNEGLNRD-HFLSF 1072
Query: 1080 AWIANDYLARIKIKCQEMANIGKSKPVNNLAR 1111
AW D L RIK N+G+ + L R
Sbjct: 1073 AWCVYDKLVRIK-----KTNLGRRQRQETLER 1099
>sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp.
japonica GN=RDR2 PE=2 SV=1
Length = 1136
Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust.
Identities = 323/977 (33%), Positives = 476/977 (48%), Gaps = 133/977 (13%)
Query: 214 AILLWLASSPRICYRTAKDDIEVLVPFDLL-----DDDDPWIRTTDFSPSGAIGQCNS-- 266
AILL L +PRI + + D D W+R DF+P+ + G+C++
Sbjct: 177 AILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLV 236
Query: 267 ----KQRVQEDCLSQPVTIREEPDFEVPVED---------PFFCMHYKEGVSFEIMFLVN 313
K + D L + + D P V +E++F +N
Sbjct: 237 LKLGKSALVSDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLN 296
Query: 314 AVMHKGILNQHQLSDSFFDLLRCQPREVIVTALKHIYSYKRPVF--------DAYEKLKD 365
++MH G + ++ F L+ P +V + ++ + + +AY +K
Sbjct: 297 SLMHMGKIVAKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYS-MKR 355
Query: 366 VQECLIKNPKLNEGPKNIDDIAEVRRLVITPTKAYWFLESKDV-----------ADRFLR 414
L+ N EG + + + R+ ITP+K + F ++V A F+R
Sbjct: 356 SHNVLLSNEGEGEGERKL---MKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVR 412
Query: 415 VTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFL 474
VTF+DE +++N +S A I + S F KTG++ R+ SIL GF++ + + FL
Sbjct: 413 VTFVDEDWSKLSSNAIS---ARIEQGFFSKPF--KTGLYYRILSILKKGFSIGPKNFEFL 467
Query: 475 AFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIP 533
AFS++QLR +S W F+ + I+ WMG F ++++K AARMG FSS+ T E+
Sbjct: 468 AFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVL 527
Query: 534 PTEVDHELPDIK----RNGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYK 589
+V+ +PDI+ + Y+FSDGIGKI+ A VA + LD + PSA+QIRY GYK
Sbjct: 528 RWDVE-VIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYK 586
Query: 590 GVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDE 649
GV+A P I +SLR SMKKF+S L I SW++ QP ++NR+II+LLSTL + DE
Sbjct: 587 GVIAIDPMS--SIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDE 644
Query: 650 IFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY 709
IF +Q + ML +VA VL + TA ML G++P +EP+L +L
Sbjct: 645 IFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKA 704
Query: 710 ----------------------------ELGELKECQCFIQVSESSLENCFSKHGSRFAE 741
E G L+ Q +I+++++S E S + +
Sbjct: 705 HQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYND 764
Query: 742 TKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSD 801
K + G V I KNPCL PGD+R+LEA+ P+L + DCLVFPQ+G+RPH NE SG D
Sbjct: 765 DGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGD 824
Query: 802 LDGDLYYVTWDENLIPPSKKSCPPMECTPAE-------------AKPLTCHVNHQNLGQI 848
LDGDLY++TWD+ LIP +K PM+ T K ++ + +LG I
Sbjct: 825 LDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAI 882
Query: 849 CNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEY 908
AH++HADRS A C+ LA L + AVD KTG MP L+P++YPDFME E
Sbjct: 883 STAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEK 942
Query: 909 QTYKSNKILGRLYRQIKG----AYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADAR 964
Y SN +LG+LYR G + D SS +P YD DLEVPGS +F A
Sbjct: 943 PMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT---YDPDLEVPGSDEFLQAAE 999
Query: 965 NQKCSYDGQLNGLLGQYNVNRKE------FRHIWSMPKYNSRKQGELQERLKHSYSAFRK 1018
Y+ +L L+ Y ++ R+ K ++++ E+++R+ + A +
Sbjct: 1000 EYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHR 1059
Query: 1019 EFRQVFEKMNSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLS 1078
E R L + K + ASAWY+VTYH + R S
Sbjct: 1060 EARGW---------LLSSRKEEDASRMASAWYRVTYHPD------------RRRGKRFWS 1098
Query: 1079 FAWIANDYLARIKIKCQ 1095
F WIA D L IK Q
Sbjct: 1099 FPWIACDNLLAIKASSQ 1115
>sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp.
japonica GN=RDR1 PE=2 SV=2
Length = 740
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 290/722 (40%), Positives = 401/722 (55%), Gaps = 64/722 (8%)
Query: 405 SKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGF 464
S D+ + FLR++F+DE + + A LS A S + +T ++KRV S+LSDG
Sbjct: 27 SSDI-ENFLRISFVDEDCEKLRATDLSPRSA-------SGHDANRTALYKRVLSVLSDGI 78
Query: 465 NLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCF 523
+ G+ + FLAFSS+QLRD+SAW F+ + DI+ WMG+F +N+AKYAAR+G F
Sbjct: 79 TIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSF 138
Query: 524 SSTHATVEIPPTEVDHELPDIKRNG--YVFSDGIGKITPDLAMEVAQILKLDGSPPPSAY 581
SS+ T+++ EV+ E+ DIK NG +VFSDGIGKI+ A EVA L P SA+
Sbjct: 139 SSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAP-SAF 195
Query: 582 QIRYAGYKGVVACWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLL 641
QIRY GYKGVVA P ++SLR SM KF+S + ++++ +++++QPGFLNRQ+ITLL
Sbjct: 196 QIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLL 253
Query: 642 STLNVSDEIFWTVQASMASKLNLMLVASDVAFEVL-TASCAEQGNTAAIMLSAGFKPQTE 700
STL V D +F Q ++LN M+ A E + E N +L G++P E
Sbjct: 254 STLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDE 313
Query: 701 PHLQGML----TYELGELKECQCFIQVSESSLENCFS-----KHGSRFAETKK------L 745
P+L +L +L ELK + ++ C K+G F
Sbjct: 314 PYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDR 373
Query: 746 QVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGD 805
+ G VVIAKNPCL PGD+RIL AVD P LHH+ +C+VFPQ+G RPH NE SGSDLDGD
Sbjct: 374 FTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGD 433
Query: 806 LYYVTWDENLIPPSKKSCPPMECTPAEAKPL-------------TCHVNHQNLGQICNAH 852
+Y+V+WD +LIPP + PM+ TPA + L T ++ +++LG I NAH
Sbjct: 434 IYFVSWDPSLIPP--RMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAH 491
Query: 853 VVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYK 912
VV AD+ + A CI LAKL + AVD PKTG +P L K+YPDFME + TY+
Sbjct: 492 VVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYE 551
Query: 913 SNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDG 972
S ++G+LYR+IK + EV YDTD+ V G D+ +A K YD
Sbjct: 552 SKGVIGKLYREIKKHTPHIKHFTREV----ARRSYDTDMIVDGYEDYITEAMALKDEYDF 607
Query: 973 QLNGLLGQYNVNRKE---FRHIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVFEKMNS 1029
+L L+ Y + + I M K ++K RL + + RKE R F +M+
Sbjct: 608 KLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRL--AVRSLRKEARSRFSEMSL 665
Query: 1030 DFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLAR 1089
D + + E KASAWY VTYH E+ +G R +SF W + L R
Sbjct: 666 D---DNGHGHDASEAKASAWYHVTYHPEF----WGCYNEGYERP-HFISFPWCIYEKLLR 717
Query: 1090 IK 1091
IK
Sbjct: 718 IK 719
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust.
Identities = 318/965 (32%), Positives = 457/965 (47%), Gaps = 158/965 (16%)
Query: 227 YRTAKDDIEVLVPFDLLDDDDPWIRTTDFSPSGAIGQCN------SKQRVQEDCLSQPVT 280
YR K+D FD + WIRTTDFS S +IG D S
Sbjct: 208 YRFCKED------FDFM-----WIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPY 256
Query: 281 IREEPDFEVPVEDPFFCMHYK---------EGVSF--EIMFLVNAVMHKGILNQHQLSD- 328
RE+ V+ F + G+ F EI+F +NA++H ++ SD
Sbjct: 257 YREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAASDM 316
Query: 329 SFFDLLRCQPREVIVTALKHIYSYKR----PVFDAYEKLKDVQECLIKNPKLNEGPKNID 384
+LR E + LK ++ PVF +++ V + + +P
Sbjct: 317 ELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQ 376
Query: 385 DIAEVRRLVITPTKAYWF---LES-----KDVADR---FLRVTFMDEGLQTMNANVLS-- 431
+I +R +TP+K Y LE+ K+ A+ F+RVTF++E + AN LS
Sbjct: 377 NIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVN 436
Query: 432 ----YYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
Y+V P +T ++ RV SIL +G + +R+ FLAFS++QLR +S W
Sbjct: 437 SKEGYFVKP-----------SRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVW 485
Query: 488 FFSKVGETSVLDIKNWMGEF-TAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPDIKR 546
F+ + DI+ WMG F ++I+K AARMG FS++ T+ + +V+ ++PDI+
Sbjct: 486 MFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE-QIPDIEV 544
Query: 547 N----GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGI 602
Y FSDGIGKI+ A +VAQ K S PSA+QIRY GYKGV+A +
Sbjct: 545 TTDGADYCFSDGIGKISLAFAKQVAQ--KCGLSHVPSAFQIRYGGYKGVIAV--DRSSFR 600
Query: 603 RMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL 662
++SLR SM KF S + L + WT P FLNR+II LLSTL + D +F +QA S L
Sbjct: 601 KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 660
Query: 663 NLMLVASDVAFEVLTASCAEQG-NTAAIMLSAGFKPQTEPHLQGMLTY------------ 709
ML D A VL E N ML G+ P +EP+L ML
Sbjct: 661 GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 720
Query: 710 ----------------ELGELKECQCFIQVSESSLENCFSKHGSRFAET-KKLQVINGFV 752
E+G L+ Q +++V+ + E S+ S F + ++ V+ G V
Sbjct: 721 CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAE-LKSRDQSYFRKIDEETSVVIGKV 779
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHH----LCDCLVFPQKGDRPHTNEASGSDLDGDLYY 808
V+ KNPCL PGD+R+L+A+ E+H DC++FPQKG+RPH NE SG DLDGD ++
Sbjct: 780 VVTKNPCLHPGDIRVLDAI--YEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFF 837
Query: 809 VTWDENLIPPSKKSCPPMECTPAEAKPLTCHVNHQ-------------NLGQICNAHVVH 855
V+WDE +IP PPM+ + + + V + LG I AH+VH
Sbjct: 838 VSWDEKIIPSEMD--PPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVH 895
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
ADR A + C+ LA L + AVD KTG MP LKP+++PDF+E E TY S
Sbjct: 896 ADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISES 955
Query: 916 ILGRLYRQIKGAYDENISVSSEVDINPVDIHYDTDLEVPGSVDFTADARNQKCSYDGQLN 975
+ G+LYR +K + + + D + YD LE G F A+ + Y +L
Sbjct: 956 VFGKLYRAVKSSLAQRKPEAESEDT----VAYDVTLEEAGFESFIETAKAHRDMYGEKLT 1011
Query: 976 GLLGQYNVNRKE--FRHIWSMPKY----NSRKQGELQERLKHSYSAFRKEFRQVFEKMNS 1029
L+ Y +E I + ++R+ G++++R+ S KE FEK
Sbjct: 1012 SLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCE 1071
Query: 1030 DFELSDNEKNVLYEQKASAWYQVTY---HREWVKKSLDLLEQGSARSVVLLSFAWIANDY 1086
D + +K L ASAWY VTY HR+ + LSF WI D
Sbjct: 1072 D----EQQKKKL----ASAWYYVTYNPNHRD--------------EKLTFLSFPWIVGDV 1109
Query: 1087 LARIK 1091
L IK
Sbjct: 1110 LLDIK 1114
>sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rdr1 PE=1 SV=1
Length = 1215
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 233/795 (29%), Positives = 377/795 (47%), Gaps = 119/795 (14%)
Query: 389 VRRLVITPTKAYWFLES-----------KDVADRFLRVTFMDEGLQTMNANVLSYYVAPI 437
+++L +TPT +S KD A+RF+RV DE YY I
Sbjct: 454 IKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDE-----------YYKQKI 502
Query: 438 VKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSV 497
S+ F + ++ R++ +L+ G + + Y FLAF ++QLR+H A+FF+ + +
Sbjct: 503 RGG--SDGFRNEK-LYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNA 559
Query: 498 LDIKNWMGEFTAKN-IAKYAARMGLCFSSTHATVEIPPTEVDHELPD-IKRNGYVFSDGI 555
I+ WMG+F+ N ++KYAARMG CFS+T EI VD L D I RN + F+DG+
Sbjct: 560 KQIREWMGDFSEINSVSKYAARMGQCFSTTK---EINRFCVDISLQDDIVRNNHCFTDGV 616
Query: 556 GKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD----DGIRMSLRGSMK 611
G + + ++ +K + PSA+Q R GYKGV++ P G + R S
Sbjct: 617 GMASLSVIRRLSLEVK-NHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQD 675
Query: 612 KFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDV 671
KFKS H++LE+ +RF LN Q+ITLL L V +F + S SK+N + +
Sbjct: 676 KFKSFHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQK 735
Query: 672 AFEVLTASCAEQGNTAAI--MLSAGFKPQTEPHLQGMLT--------------------- 708
+ +L + E +T I + AGF + + + +L
Sbjct: 736 SILMLRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKG 795
Query: 709 -YELGELKEC---------------QCFIQVSESSLENCFSKHGSRFAETKKLQVINGFV 752
Y LG E + FIQ++++S + GS K +VI G
Sbjct: 796 AYLLGVADETGTLKGHYDDAVLSVPEIFIQITDTS-----TSFGSYSTGKLKTRVIVGLC 850
Query: 753 VIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWD 812
++A+NP L PGDVR+ +AV EL HL + +VFP GDR SG DLDGD Y V WD
Sbjct: 851 IVARNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWD 910
Query: 813 ENLIPPSKKSCPPMECTPA------EAKPL--------TCHVNHQNLGQICNAHVVHA-- 856
+ L+P P +E +P E KPL ++ + +LG I NA A
Sbjct: 911 QRLLPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHD 970
Query: 857 -DRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
D + G F C+ LA++ + AVD K+G M + PK+YPDFM+ + ++++S
Sbjct: 971 HDNNPEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSET 1030
Query: 916 ILGRLYRQIKGAYDENISVSSEVDINPV-DIHYDTDLEVPG-SVDFTADARNQKCSYDGQ 973
+G+++R E+ NP+ + YD +++P ++ A K YD
Sbjct: 1031 AVGKIFRYAARFQRES---GRPATYNPIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDND 1087
Query: 974 LNGLLGQYNVNRK-EFRHIWSMPKYNSRK---QGELQERLKHSYSAFRKEFRQVF-EKM- 1027
L ++ +++++ + E + + K + K + L+E + + +K++ Q + EK
Sbjct: 1088 LRSIMARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCA 1147
Query: 1028 ---NSDFELSDNEKNVLYEQKASAWYQVTYHREWVKKSLDLLEQGSARSVVLLSFAWIAN 1084
S F+ S+ E+ + +A Y VTY + KS+ G+ + VL+SF ++ +
Sbjct: 1148 LSNQSAFDSSEYEERI--NSAVAATYDVTYDQR--VKSV-----GNGTTEVLISFPYLFS 1198
Query: 1085 DYLARIKIKCQEMAN 1099
L ++ K AN
Sbjct: 1199 SRLCQLSRKAMLTAN 1213
>sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana
GN=RDR5 PE=2 SV=2
Length = 977
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 147/625 (23%), Positives = 237/625 (37%), Gaps = 125/625 (20%)
Query: 428 NVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW 487
NVL+ A + K ++ S + K I +G + RRY F F +
Sbjct: 243 NVLTVKFADVQKSSSTYSIDH----YFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKD 298
Query: 488 --------FFSKVGETSVLDIKN---------------WMGEFTAKNIAKYAARMGLCFS 524
+F + T+ D++N +M A +A Y AR L S
Sbjct: 299 LSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILS 358
Query: 525 STHATVEIPPTEV-----------DHELPDI---KRNGYVFSDGIGKITPDLA------- 563
T T+E+ T + D + D+ + + SDG G I+ DLA
Sbjct: 359 KT-KTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNI 417
Query: 564 -----MEVAQILKLDGSPPPSAYQIR--YAGY--KGV-----------VACWPAKDDGIR 603
+ I + PP Q R Y GY KG V P+ I+
Sbjct: 418 FKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSM---IK 474
Query: 604 MSLRGSMKKFKSCHTSLEICSWTRFQPGF--LNRQIITLLSTLNVSDEIFWTVQASMASK 661
+S S+ F S +LE+ + T P L++ ++ LLS + +E F + + +
Sbjct: 475 VSKDPSLSNF-STFNALEVVT-TSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEE 532
Query: 662 LNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQG----MLTYELGELKEC 717
+ A AA M+ G P EPHL+ +L E +LK
Sbjct: 533 SKSIFYNKRAALNAALNYGEMDDQNAAQMILVGI-PLDEPHLKNYLSILLKTEKNDLKAG 591
Query: 718 QCFIQVSESSLENCFSKHGSRFAETKKLQV-----INGFVVIAKNPCLRPGDVRILEAVD 772
+ + V+ES E + + I+G V++ +NP L GD+ IL+A
Sbjct: 592 K--LPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATY 649
Query: 773 RPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMEC 828
L + FPQKG R +E +G D DGD+Y+++ + L+ K S P +
Sbjct: 650 VKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSL 709
Query: 829 T----------PAEAKPLTCHVNHQNLGQICNAH--------------------VVHADR 858
T P++ P + H ++ DR
Sbjct: 710 TPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDR 769
Query: 859 SEYGA-FDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKIL 917
+E A + + L + A+D+PK G V +P+ LKP +P +ME + + ++S IL
Sbjct: 770 AEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERD--KKFQSTSIL 827
Query: 918 GRLYRQIKGAYDENISVSSEVDINP 942
G ++ +K E S SSE+ P
Sbjct: 828 GLIFDFVKSQTTEEPSPSSEISKLP 852
>sp|O82189|RDR4_ARATH Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana
GN=RDR4 PE=3 SV=2
Length = 927
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 142/582 (24%), Positives = 230/582 (39%), Gaps = 125/582 (21%)
Query: 453 FKRVKSILSDGFNLCGRRYSFLAF-----SSNQLRDHSAW---FFSKVGETSVLDIKN-- 502
+ + K I +G + RRY F F + + R+ + +F + G T+ D++N
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327
Query: 503 -------------WMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVD-HELPDIK--- 545
+M T + A Y AR L S T +E+ TE+ ++ DI
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKT-KKLEVDMTEITVMQIDDIHCHD 386
Query: 546 --------RNG--YVFSDGIGKITPDLA------------MEVAQILKLDGSPPPSAYQI 583
+NG + SDG G I+ DLA M I PP QI
Sbjct: 387 QSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQI 446
Query: 584 RY----AGYKGVVAC---WPAKDDGIRMSLRGSMKKFK-------SCHTSLEICSWTRF- 628
R + KG+ P + +R S+ +K +K S SLE+ + +
Sbjct: 447 RMFNDGSAVKGIFLLNKNLPPQTVQVRPSM---IKVYKDKNLSNFSTFNSLEVVTTSNPP 503
Query: 629 QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCA--EQGN- 685
+ L++ ++ LLS V ++ F + LN + + F+V A A GN
Sbjct: 504 KRAKLSKNLVALLSYGGVPNDFFLDIL------LNTLEKKKTIFFKVRAAGKAALHYGNM 557
Query: 686 ---TAAIMLSAGFKPQTEPHLQ----GMLTYELGELKECQCFIQVSESSLENCFSKHGSR 738
A M+ AG P EP+L+ +L E +LK + I S + +
Sbjct: 558 DDKNALQMIMAGI-PLDEPYLKHYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELK 616
Query: 739 FAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLVFPQKGDRPHT 794
E L V++ +NP L GD+ IL+A L + FPQKG R
Sbjct: 617 EDEVSGLAKSQD-VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLG 675
Query: 795 NEASGSDLDGDLYYVTWDENLIPPSKKSCP---------------PMECTPAEAKPLTCH 839
+E +G D DGD+Y+++ + L+ K S P P E +P + +
Sbjct: 676 DEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFK 735
Query: 840 VNHQN-------LGQICNAHVVHADRSEYGAFDENC----------ILLAKLAATAVDSP 882
+ + +GQ ++ + DR DEN + L + A+D+P
Sbjct: 736 IFLKTGFSPSSVIGQAADSWLAIMDRF-LTLGDENVKEKAEMKKKMLKLTDIYYDAIDAP 794
Query: 883 KTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
KTG V +P +K +P +M E +T+KS ILG ++ +
Sbjct: 795 KTGTEVNLPLDVKVDLFPHYM--ERNKTFKSTSILGLIFDTV 834
>sp|O82190|RDR3_ARATH Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana
GN=RDR3 PE=3 SV=2
Length = 992
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 130/591 (21%), Positives = 231/591 (39%), Gaps = 128/591 (21%)
Query: 452 VFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAW--------FFSKVGETSVLDIKN- 502
++ K I +G + RRY F F + +F + T+ +D++N
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326
Query: 503 --------------WMGEFTAKNIAKYAARMGLCFSSTHATVEIPPTEVDHELPD----- 543
+M T ++ Y +R L S T T+E+ T + E D
Sbjct: 327 YIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKT-KTLEVDMTGITFEQIDDIHCH 385
Query: 544 -------IKRNGY--VFSDGIGKITPDLA-MEVAQILKLD-------------------- 573
+ +NG + SDG G I+ DLA M I K
Sbjct: 386 DQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPC 445
Query: 574 GSPPPSAYQIR--YAGY--KGVVAC---WPAKDDGIRMSLRGSMKKFK-------SCHTS 619
G PP Q R Y GY KG P + +R S+ +K ++ S S
Sbjct: 446 GQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSM---IKVYEDRTLSNLSTFNS 502
Query: 620 LEICSWTRF-QPGFLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTA 678
LE+ + + + L+R ++ LLS V ++ F + + + + + AF+
Sbjct: 503 LEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAIN 562
Query: 679 SCAEQGNTAAIMLSAGFKPQTEPHLQGMLTYELGELKECQCFIQVSESSLENCFSKHGS- 737
+Q I++ P EP+L+ L+Y L K + ++ ++ + G+
Sbjct: 563 YGDDQYTADMILVGI---PLDEPYLKDRLSYLL---KTERNALKAGRFPIDESYYIMGTV 616
Query: 738 -RFAETKKLQV--------INGFVVIAKNPCLRPGDVRILEAVDRPELHHLCD----CLV 784
E K+ ++ I+G V++ +NP L GD+ +L+A L +
Sbjct: 617 DPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVF 676
Query: 785 FPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPMECT-PAEA----KPLT-- 837
FPQKG R +E +G D DGD+Y+++ + L+ K S P + + P++ KP
Sbjct: 677 FPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELS 736
Query: 838 -----------------CHVNHQNLGQIC-----NAHVVHADRSEYGAFD--ENCILLAK 873
C + + C + + D S ++ +N + L
Sbjct: 737 EEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLID 796
Query: 874 LAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQI 924
+ A+D+PK G V +P L+ K +P +ME + + ++S ILG ++ +
Sbjct: 797 IYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTV 847
>sp|Q5QMN5|RDR3_ORYSJ Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp.
japonica GN=RDR3 PE=2 SV=2
Length = 1153
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/539 (22%), Positives = 213/539 (39%), Gaps = 122/539 (22%)
Query: 508 TAKNIAKYAARMGLCFSST---HATVEIPPTEVDHELPDIKRNGYVF---------SDGI 555
+A +AKY AR L S T A + + P + R+G V +DG
Sbjct: 506 SAPTLAKYMARFALILSKTITWDADLSAVYVRRIKDEPCMDRHGNVVHKDQEPLIHTDGT 565
Query: 556 GKITPDLAME----------------------------VAQILKLDGSPPPSAYQIRYAG 587
G ++ DLA+ V + +D PP+ IR +
Sbjct: 566 GLVSVDLALNCPTSIFKGKFLKPQPLLMQFRLFYNGSAVKGTVLVDRRLPPATILIRPSM 625
Query: 588 YKGVVACWPAKDDGIR-------MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQI 637
K + P + G+R +S R + K + S EI S + R + +R +
Sbjct: 626 VK--IETHP-ELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSRFL 682
Query: 638 ITLLSTLNVSDEIFW-TVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFK 696
ITLL V +E F +Q+++ N D + + E +A ++LS
Sbjct: 683 ITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADMEDSMSARMILSG--I 740
Query: 697 PQTEPHLQGMLTYELGE-----------LKECQCFIQVSESSL-----ENCFSKHGSRFA 740
P E +LQ L + + + EC + ++ + E C +F+
Sbjct: 741 PLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFS 800
Query: 741 ETKKLQVINGFVVIAKNPCLRPGDVRILEA-----VDRPELHHLCDCLVFPQKGDRPHTN 795
G V++ K+P L GD+ +L+A +++ + + ++FP G R +
Sbjct: 801 ---------GDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLAD 851
Query: 796 EASGSDLDGDLYYVTWDENLIPPSKKSCP--------------PMECTPAEAKPLTCHVN 841
E + SD DGD+Y+V+ + L+ K S P P +C ++ + L H
Sbjct: 852 EMANSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEF 911
Query: 842 HQN-------LGQICNAHVVHADRSEYGAFDE--------NCILLAKLAATAVDSPKTGK 886
+ LG ++ + + DR + DE + L L A+D+PKTG
Sbjct: 912 LKTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGN 971
Query: 887 IVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDI 945
V +PS L K+YP FM +Y S+ ILG++Y + E++ ++ P+ +
Sbjct: 972 KVNIPSDLMVKQYPHFM--GRSFSYHSSSILGQIYDKA-----EDVESLRSCNVQPIGV 1023
>sp|Q5QMN4|RDR4_ORYSJ Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp.
japonica GN=RDR4 PE=2 SV=2
Length = 1183
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 152/366 (41%), Gaps = 56/366 (15%)
Query: 604 MSLRGSMKKFKSCHT--SLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASMAS 660
+S R + K + S EI S + R F + +I LL V +E F + +
Sbjct: 667 VSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIE 726
Query: 661 KLNLMLVASDVAFEVLTASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTY-ELGELKECQC 719
+ + A + + + A M+ +G P E +LQ L + L E K
Sbjct: 727 EADNARFDYAGALNIAFNYADMEDSMPARMILSGI-PLEESYLQSRLDFLSLLERKG--- 782
Query: 720 FIQVSESSLENCFSKHGSRFAETKKLQ-----------VINGFVVIAKNPCLRPGDVRIL 768
I+ + +++C+ G+ T KL ++G V++ K P L PGD+ +L
Sbjct: 783 -IKNGKIPIDDCYYLMGTA-DPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVL 840
Query: 769 EAVDRPELHHLCD----CLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLI---PPSKK 821
+A ++ + ++FP G R +E + SD DGD+Y+V+ + L+ PSK
Sbjct: 841 KATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKP 900
Query: 822 SCP-----------PMECTPAEAKPLTCH--------VNHQNLGQICNAHV-------VH 855
P P + +E + + H ++ N V V
Sbjct: 901 WVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVS 960
Query: 856 ADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNK 915
D SE ++ + L L A+D+PK G V +P L K+YP FM + +Y S+
Sbjct: 961 LDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFM--DRSPSYHSSS 1018
Query: 916 ILGRLY 921
ILG++Y
Sbjct: 1019 ILGKIY 1024
>sp|B3R883|YIDC_CUPTR Membrane protein insertase YidC OS=Cupriavidus taiwanensis (strain
R1 / LMG 19424) GN=yidC PE=3 SV=1
Length = 559
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 89 RAMDAAEHMELFLNGRALKVSLGPENPFR---------LNQRGGTSAPLKLPDVYVEI-- 137
RA+D AE +++ L G V L FR + +AP+ P +Y+E+
Sbjct: 159 RALDGAEQVQVVLTGEKNGVKLVKTYTFRKGSYVVDSKFDVTNAGTAPVS-PTLYLELAR 217
Query: 138 -GSLVTQDEFFVSWRGPASGTD 158
GS V Q +F+ ++ GPA TD
Sbjct: 218 DGSKVEQSQFYSTFTGPAIYTD 239
>sp|Q7MBB2|CH60_MYCGA 60 kDa chaperonin OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=groL PE=3 SV=2
Length = 534
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Query: 609 SMKKFKSCHTSLEICSWTRFQPGF----------------LNRQIITLLSTLNVSDEIFW 652
S+ KS T+L+ F+ G+ N +I+ L+ +N EI
Sbjct: 174 SIDDAKSFDTTLDTTDGLEFKGGYSSPYMVTDSEKMLSELANPKILVSLNKINTVKEILP 233
Query: 653 TVQASMASKLNLMLVASDVAFEVLTA 678
++AS+ S L++VASD+A +V+TA
Sbjct: 234 LLEASVESSAPLLIVASDIAEDVVTA 259
>sp|B8ENL1|LEPA_METSB Elongation factor 4 OS=Methylocella silvestris (strain BL2 / DSM
15510 / NCIMB 13906) GN=lepA PE=3 SV=1
Length = 601
Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 20/115 (17%)
Query: 175 DTAFALKSSAEHAV---IKCEFKVFLVREIDIVKQYSELPRVAILLWLASSPRICYRTAK 231
D +F+ + + A+ +C F L ++I+++ L R L +A++P + Y+ +
Sbjct: 326 DASFSYEMESSAALGFGFRCGFLGLL--HLEIIQE--RLEREFNLDLIATAPSVIYKIVQ 381
Query: 232 ---DDIEVLVPFDLLDD------DDPWIRTTDFSPSGAIGQ----CNSKQRVQED 273
D IE+ P D+ D ++PWIR T +P +G C ++ VQ D
Sbjct: 382 RDGDTIELHNPADMPDPTKIETIEEPWIRATILTPDDYLGAVLKLCQERRGVQVD 436
>sp|Q336M2|CDKE1_ORYSJ Cyclin-dependent kinase E-1 OS=Oryza sativa subsp. japonica
GN=CDKE-1 PE=2 SV=2
Length = 475
Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 836 LTCHVNHQNLGQICNAHVVHADRSEYGAFD 865
L +NH+N+ ++ N H+ HAD S Y AFD
Sbjct: 80 LLREINHENVVKLVNVHINHADMSLYLAFD 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,580,445
Number of Sequences: 539616
Number of extensions: 17910765
Number of successful extensions: 40898
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 40793
Number of HSP's gapped (non-prelim): 31
length of query: 1117
length of database: 191,569,459
effective HSP length: 128
effective length of query: 989
effective length of database: 122,498,611
effective search space: 121151126279
effective search space used: 121151126279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)