Query 048783
Match_columns 1117
No_of_seqs 296 out of 491
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 13:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0988 RNA-directed RNA polym 100.0 1E-173 2E-178 1558.0 58.9 1033 3-1114 3-1140(1145)
2 PF05183 RdRP: RNA dependent R 100.0 2E-111 4E-116 1019.1 17.0 485 404-927 19-573 (579)
3 PLN03134 glycine-rich RNA-bind 98.5 4.7E-07 1E-11 92.2 10.6 84 8-115 32-115 (144)
4 PF14259 RRM_6: RNA recognitio 98.5 8.2E-07 1.8E-11 78.1 8.8 70 13-107 1-70 (70)
5 PF00076 RRM_1: RNA recognitio 98.4 2.1E-06 4.6E-11 74.5 9.3 70 13-107 1-70 (70)
6 PLN03120 nucleic acid binding 98.3 2.8E-06 6E-11 93.6 9.9 78 8-113 2-79 (260)
7 smart00360 RRM RNA recognition 98.2 7.5E-06 1.6E-10 69.4 8.2 71 15-109 1-71 (71)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.2 6.6E-06 1.4E-10 94.2 10.0 76 10-109 3-78 (352)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.1 8.1E-06 1.8E-10 93.4 10.1 75 12-110 271-345 (352)
10 smart00362 RRM_2 RNA recogniti 98.1 1.3E-05 2.8E-10 68.3 8.9 72 12-109 1-72 (72)
11 TIGR01659 sex-lethal sex-letha 98.1 1.1E-05 2.5E-10 93.2 10.1 81 6-110 103-183 (346)
12 cd00590 RRM RRM (RNA recogniti 98.0 3.8E-05 8.2E-10 65.8 9.3 73 12-109 1-73 (74)
13 KOG0117 Heterogeneous nuclear 98.0 1.8E-05 4E-10 91.1 9.0 81 7-110 80-160 (506)
14 TIGR01659 sex-lethal sex-letha 98.0 2.6E-05 5.6E-10 90.3 10.2 84 9-114 192-275 (346)
15 TIGR01622 SF-CC1 splicing fact 97.9 5E-05 1.1E-09 90.3 12.0 81 6-111 85-165 (457)
16 TIGR01645 half-pint poly-U bin 97.8 7.8E-05 1.7E-09 91.4 11.6 78 9-110 106-183 (612)
17 TIGR01645 half-pint poly-U bin 97.8 5.3E-05 1.1E-09 92.9 9.8 76 10-109 204-279 (612)
18 PLN03121 nucleic acid binding 97.8 9E-05 2E-09 80.9 9.9 74 9-110 4-77 (243)
19 TIGR01648 hnRNP-R-Q heterogene 97.7 0.00011 2.5E-09 89.8 9.5 77 9-109 57-133 (578)
20 TIGR01628 PABP-1234 polyadenyl 97.7 0.00016 3.5E-09 88.6 10.3 80 11-114 1-80 (562)
21 TIGR01642 U2AF_lg U2 snRNP aux 97.6 0.00013 2.9E-09 87.9 8.9 75 6-110 171-256 (509)
22 TIGR01622 SF-CC1 splicing fact 97.6 0.0002 4.4E-09 85.2 10.3 79 10-112 186-264 (457)
23 TIGR01628 PABP-1234 polyadenyl 97.6 0.00017 3.7E-09 88.3 9.8 81 8-113 283-363 (562)
24 COG0724 RNA-binding proteins ( 97.6 0.00023 5.1E-09 75.5 9.4 79 10-112 115-193 (306)
25 TIGR01642 U2AF_lg U2 snRNP aux 97.6 0.00024 5.2E-09 85.7 10.1 79 10-112 295-373 (509)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.5 0.00027 5.9E-09 85.3 9.2 75 10-112 2-76 (481)
27 KOG4208 Nucleolar RNA-binding 97.4 0.00031 6.7E-09 74.6 7.3 75 12-109 51-125 (214)
28 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.4 0.00099 2.1E-08 80.5 12.1 77 9-114 274-351 (481)
29 smart00361 RRM_1 RNA recogniti 97.1 0.0018 3.9E-08 57.8 7.5 65 24-109 2-70 (70)
30 KOG0149 Predicted RNA-binding 97.1 0.0015 3.3E-08 70.7 8.1 84 5-113 7-90 (247)
31 TIGR01648 hnRNP-R-Q heterogene 96.9 0.0045 9.7E-08 76.1 10.6 82 10-111 138-219 (578)
32 KOG0148 Apoptosis-promoting RN 96.8 0.003 6.6E-08 69.5 7.2 97 9-109 5-137 (321)
33 KOG4212 RNA-binding protein hn 96.7 0.0048 1E-07 71.4 8.6 80 11-114 45-124 (608)
34 KOG0122 Translation initiation 96.7 0.0047 1E-07 67.3 8.1 76 10-109 189-264 (270)
35 PLN03213 repressor of silencin 96.5 0.01 2.2E-07 69.6 9.6 79 4-110 4-84 (759)
36 PF13893 RRM_5: RNA recognitio 96.4 0.012 2.5E-07 49.9 7.2 54 27-109 1-54 (56)
37 KOG0105 Alternative splicing f 96.4 0.0062 1.3E-07 63.9 6.2 77 9-112 5-81 (241)
38 KOG0153 Predicted RNA-binding 96.2 0.014 3E-07 66.4 8.1 80 3-111 221-300 (377)
39 KOG0127 Nucleolar protein fibr 96.1 0.019 4.1E-07 68.4 9.1 81 9-111 291-375 (678)
40 KOG0117 Heterogeneous nuclear 96.1 0.013 2.9E-07 68.3 7.5 71 9-111 258-328 (506)
41 KOG0108 mRNA cleavage and poly 96.1 0.014 3.1E-07 69.5 7.9 82 11-116 19-100 (435)
42 KOG0131 Splicing factor 3b, su 96.0 0.012 2.6E-07 61.8 5.9 79 10-112 9-87 (203)
43 KOG0148 Apoptosis-promoting RN 95.9 0.025 5.4E-07 62.6 8.2 77 10-116 164-240 (321)
44 KOG0123 Polyadenylate-binding 95.9 0.021 4.5E-07 67.1 8.0 77 11-114 77-153 (369)
45 KOG0124 Polypyrimidine tract-b 95.1 0.049 1.1E-06 62.1 7.1 76 9-109 209-285 (544)
46 KOG0144 RNA-binding protein CU 94.9 0.049 1.1E-06 63.6 6.7 103 8-143 32-135 (510)
47 KOG0107 Alternative splicing f 94.7 0.095 2.1E-06 55.0 7.4 75 9-115 9-86 (195)
48 KOG4206 Spliceosomal protein s 94.5 0.11 2.3E-06 56.5 7.5 81 12-119 11-95 (221)
49 KOG0111 Cyclophilin-type pepti 94.2 0.061 1.3E-06 57.9 5.0 78 8-109 8-85 (298)
50 KOG0116 RasGAP SH3 binding pro 94.1 0.093 2E-06 62.4 6.6 76 9-109 287-362 (419)
51 KOG0127 Nucleolar protein fibr 93.9 0.12 2.5E-06 62.1 6.9 76 10-109 5-80 (678)
52 PF04059 RRM_2: RNA recognitio 93.6 0.32 6.8E-06 46.9 8.1 65 10-95 1-66 (97)
53 KOG4205 RNA-binding protein mu 93.6 0.098 2.1E-06 60.1 5.5 80 10-114 97-176 (311)
54 KOG0113 U1 small nuclear ribon 93.4 0.29 6.3E-06 55.1 8.5 76 10-109 101-176 (335)
55 KOG0129 Predicted RNA-binding 93.3 0.25 5.3E-06 59.2 8.2 88 9-133 369-456 (520)
56 KOG4207 Predicted splicing fac 93.0 0.21 4.6E-06 53.6 6.5 76 10-111 13-90 (256)
57 PF14605 Nup35_RRM_2: Nup53/35 92.2 0.31 6.8E-06 41.7 5.4 52 11-91 2-53 (53)
58 KOG0145 RNA-binding protein EL 92.2 0.72 1.6E-05 51.1 9.3 77 9-109 40-116 (360)
59 KOG0123 Polyadenylate-binding 92.2 0.23 4.9E-06 58.5 6.0 84 7-115 267-350 (369)
60 KOG0125 Ataxin 2-binding prote 91.8 0.37 8.1E-06 54.9 6.8 83 3-111 89-171 (376)
61 KOG0132 RNA polymerase II C-te 91.7 0.41 8.9E-06 59.6 7.6 72 8-109 419-490 (894)
62 KOG0121 Nuclear cap-binding pr 91.4 0.58 1.3E-05 47.1 7.0 77 8-109 34-111 (153)
63 KOG4205 RNA-binding protein mu 91.4 0.19 4.1E-06 57.8 4.1 74 11-109 7-80 (311)
64 KOG0109 RNA-binding protein LA 90.8 0.39 8.5E-06 53.9 5.7 69 13-115 5-74 (346)
65 KOG0110 RNA-binding protein (R 90.8 0.62 1.4E-05 57.7 7.9 79 13-112 518-596 (725)
66 KOG4211 Splicing factor hnRNP- 89.5 0.76 1.6E-05 54.9 6.9 82 9-115 102-183 (510)
67 KOG4209 Splicing factor RNPS1, 89.1 0.63 1.4E-05 51.5 5.6 85 5-114 96-180 (231)
68 PF11608 Limkain-b1: Limkain b 88.9 1.3 2.8E-05 41.8 6.6 74 9-113 1-76 (90)
69 PF08777 RRM_3: RNA binding mo 88.4 1.2 2.7E-05 43.4 6.5 70 12-109 3-75 (105)
70 KOG4211 Splicing factor hnRNP- 88.2 1 2.2E-05 54.0 6.7 74 10-111 10-83 (510)
71 KOG0144 RNA-binding protein CU 87.6 0.49 1.1E-05 55.6 3.7 84 3-109 115-201 (510)
72 KOG0114 Predicted RNA-binding 87.6 2.5 5.5E-05 41.3 7.9 75 8-109 16-90 (124)
73 KOG0147 Transcriptional coacti 85.4 1.2 2.6E-05 53.9 5.5 76 13-112 281-356 (549)
74 KOG1457 RNA binding protein (c 85.0 2.7 5.8E-05 46.0 7.3 85 8-116 32-120 (284)
75 KOG0130 RNA-binding protein RB 83.6 2.4 5.1E-05 43.2 5.8 75 11-109 73-147 (170)
76 KOG0147 Transcriptional coacti 81.6 0.75 1.6E-05 55.6 1.8 84 4-112 173-256 (549)
77 KOG0146 RNA-binding protein ET 81.4 2.8 6.2E-05 46.7 5.9 74 12-109 287-360 (371)
78 KOG0124 Polypyrimidine tract-b 81.4 2.2 4.8E-05 49.2 5.3 74 12-109 115-188 (544)
79 KOG0533 RRM motif-containing p 81.0 5 0.00011 44.9 7.8 76 10-110 83-158 (243)
80 KOG0109 RNA-binding protein LA 80.3 2 4.3E-05 48.6 4.3 73 7-111 75-147 (346)
81 KOG0145 RNA-binding protein EL 78.2 2.2 4.8E-05 47.4 3.8 62 10-93 127-188 (360)
82 PF05172 Nup35_RRM: Nup53/35/4 76.6 10 0.00022 37.0 7.5 79 10-107 6-84 (100)
83 KOG1365 RNA-binding protein Fu 76.4 5.5 0.00012 46.6 6.5 73 11-109 162-238 (508)
84 KOG0110 RNA-binding protein (R 74.0 4.3 9.2E-05 50.7 5.1 72 10-104 613-684 (725)
85 KOG4454 RNA binding protein (R 73.5 2.3 4.9E-05 46.5 2.4 84 5-114 4-87 (267)
86 KOG0126 Predicted RNA-binding 72.9 1 2.2E-05 47.9 -0.4 97 11-138 36-132 (219)
87 KOG4212 RNA-binding protein hn 71.7 7.9 0.00017 46.0 6.3 72 9-109 535-606 (608)
88 KOG4660 Protein Mei2, essentia 68.7 5.9 0.00013 48.3 4.6 81 4-114 69-149 (549)
89 KOG1548 Transcription elongati 68.3 19 0.0004 42.0 8.2 77 9-110 133-217 (382)
90 KOG0226 RNA-binding proteins [ 65.3 11 0.00024 42.2 5.5 76 10-109 190-265 (290)
91 KOG1190 Polypyrimidine tract-b 62.5 12 0.00026 44.3 5.4 73 10-109 414-486 (492)
92 KOG0129 Predicted RNA-binding 62.3 23 0.00051 43.1 7.8 89 6-115 255-344 (520)
93 KOG1457 RNA binding protein (c 62.2 8 0.00017 42.5 3.7 64 5-94 205-268 (284)
94 KOG0131 Splicing factor 3b, su 61.8 14 0.0003 39.7 5.2 81 9-112 95-175 (203)
95 smart00663 RPOLA_N RNA polymer 59.0 11 0.00023 43.5 4.2 52 746-809 198-252 (295)
96 PF10309 DUF2414: Protein of u 58.6 29 0.00062 31.1 5.9 57 8-93 3-61 (62)
97 KOG4307 RNA binding protein RB 57.7 17 0.00037 45.5 5.8 60 11-92 868-927 (944)
98 KOG0120 Splicing factor U2AF, 55.9 7.7 0.00017 47.4 2.6 85 9-113 174-259 (500)
99 KOG1365 RNA-binding protein Fu 55.8 19 0.00042 42.3 5.5 83 8-114 278-362 (508)
100 PF00623 RNA_pol_Rpb1_2: RNA p 53.7 11 0.00024 39.9 3.0 52 747-810 95-149 (166)
101 KOG1855 Predicted RNA-binding 51.5 26 0.00055 41.9 5.7 93 1-107 222-319 (484)
102 KOG4210 Nuclear localization s 47.0 14 0.00029 42.5 2.6 77 10-111 184-261 (285)
103 KOG4660 Protein Mei2, essentia 40.6 27 0.00058 43.0 3.8 33 70-102 427-460 (549)
104 KOG1996 mRNA splicing factor [ 39.3 46 0.00099 38.2 5.0 66 22-109 290-362 (378)
105 PRK02625 rpoC1 DNA-directed RN 37.1 41 0.0009 42.4 4.7 52 746-809 422-476 (627)
106 CHL00018 rpoC1 RNA polymerase 34.5 37 0.00079 43.2 3.8 52 746-809 443-497 (663)
107 KOG4661 Hsp27-ERE-TATA-binding 34.4 1.1E+02 0.0025 37.8 7.6 84 7-115 402-485 (940)
108 cd00292 EF1B Elongation factor 32.8 99 0.0021 29.6 5.5 55 448-505 18-72 (88)
109 TIGR02387 rpoC1_cyan DNA-direc 32.3 36 0.00079 42.8 3.2 51 747-809 416-469 (619)
110 KOG4307 RNA binding protein RB 31.8 66 0.0014 40.7 5.2 72 11-114 3-77 (944)
111 KOG0106 Alternative splicing f 31.5 38 0.00082 37.5 2.9 55 11-95 2-56 (216)
112 KOG0106 Alternative splicing f 28.5 45 0.00096 36.9 2.8 69 9-109 98-166 (216)
113 KOG0415 Predicted peptidyl pro 28.1 1.5E+02 0.0032 35.0 6.8 61 13-95 242-302 (479)
114 KOG1995 Conserved Zn-finger pr 25.7 96 0.0021 36.5 4.9 91 8-115 64-155 (351)
115 TIGR00489 aEF-1_beta translati 24.5 2E+02 0.0043 27.7 5.9 58 448-508 18-75 (88)
116 PRK08566 DNA-directed RNA poly 23.1 77 0.0017 42.0 4.0 54 745-810 410-466 (882)
117 KOG2202 U2 snRNP splicing fact 22.6 58 0.0013 36.7 2.4 45 70-116 106-150 (260)
118 PRK00435 ef1B elongation facto 22.0 2.2E+02 0.0047 27.3 5.7 58 448-508 18-75 (88)
119 PRK00566 DNA-directed RNA poly 21.4 94 0.002 42.2 4.2 52 747-810 405-459 (1156)
120 TIGR02390 RNA_pol_rpoA1 DNA-di 20.9 88 0.0019 41.4 3.9 54 745-810 406-462 (868)
121 KOG4206 Spliceosomal protein s 20.1 3.3E+02 0.0071 30.4 7.3 60 10-96 146-205 (221)
No 1
>KOG0988 consensus RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification]
Probab=100.00 E-value=1.1e-173 Score=1558.01 Aligned_cols=1033 Identities=33% Similarity=0.480 Sum_probs=839.1
Q ss_pred ccccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCC-CCCcccccccccccccCCCCCccceEEEEe
Q 048783 3 EREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSE-SYPNFFIENVAEVQKTDDYEKVEPHAFVHF 81 (1117)
Q Consensus 3 ~~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~afV~F 81 (1117)
..+...++.++.++||+.+.+|.++.+|+|..+|.+|+|.++.+||+|- +|++|.+.|...++....+ ...|+|+|+|
T Consensus 3 ~~~~~~~~~~~~~~~f~e~~~~~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~l~~~~-~~~~~a~v~f 81 (1145)
T KOG0988|consen 3 SNAQLQVVEEQDCNGFPESNSAVELGDFLELLIGAITVYLLKMNTTKPYRPNRVYHGSDFTSIALDCSG-IETPLAKVYF 81 (1145)
T ss_pred cccceeeeeeeeccCcccchhHHHhhhHHHHHhcchHHHHHhcCCCCCCCCcccccccccccccccccc-chhhHHHHhh
Confidence 3455669999999999999999999999999999999999999999996 9999999999999998865 8899999999
Q ss_pred cChHHHHHHHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeeecC---CeEEEEecCCCCCee
Q 048783 82 ATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQ---DEFFVSWRGPASGTD 158 (1117)
Q Consensus 82 ~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~v~ 158 (1117)
...+. ..+.+.++ ...+++....++..++|...+....+.+.++++++|+.+. +.+.|-|.. .++
T Consensus 82 ~~~~~-~~~~e~~~--------~~~~l~~~a~~~~~l~~i~~~~~F~~~~~~t~~~~~~~~~~v~~~v~V~~~~---~~~ 149 (1145)
T KOG0988|consen 82 KHNQG-LNPWEVET--------SRRILSSLAVIRESLNQIVLEKVFDKPDGITKTFDCLESYKVNDQVTVRGSP---VRR 149 (1145)
T ss_pred ccCCC-CCccchhh--------hhhhccccccchHHHhhHHHhhccCcccceeeeecceEEEeecceEEEeccc---eee
Confidence 99886 33444433 2233332333555576666666677777899999999999 999999987 389
Q ss_pred eEecCCCCceeeeeecccccccccccccceeeeeEEE-EeecccceeeeecCCCceEEEEEcccCCceeEEccCCCcccc
Q 048783 159 FLVDPFDGTCKFCFTKDTAFALKSSAEHAVIKCEFKV-FLVREIDIVKQYSELPRVAILLWLASSPRICYRTAKDDIEVL 237 (1117)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl-~~~~~i~~~~~~~~~~~~~ll~~l~~~p~i~~~~~~~~~~~~ 237 (1117)
+.+||+...|++| ..|.+.-...+...+||++. .+.+ +-...+|-. ....+.+++...|.++....+ .
T Consensus 150 ~~~~p~~~~~~~~----v~f~~~~~~~i~~~~~D~~~~s~~~-~~~~~~~~~-~G~~k~~~~~~~p~~~~~~~~-----~ 218 (1145)
T KOG0988|consen 150 IVESPVVEYCKLC----VPFEHSCRVLIETVSLDLDKPSIIR-YPKSRRYLD-NGGSKYFRFAFSPLLLALGDS-----E 218 (1145)
T ss_pred eeecccccccccc----cchhhcchhheeeEEeccCcchhcc-Ccchhhhhh-cCccceeecccccHHHhhccc-----e
Confidence 9999999999932 23334444556678888888 4444 333333322 455578888888988666533 1
Q ss_pred cccCCCC-CCCCeeEeeccCCCCCcccccccc---------ccccccC--------CCCeEEeeCCCCCccCCCcccccc
Q 048783 238 VPFDLLD-DDDPWIRTTDFSPSGAIGQCNSKQ---------RVQEDCL--------SQPVTIREEPDFEVPVEDPFFCMH 299 (1117)
Q Consensus 238 ~~~~~~~-~~~~W~R~td~~~~~~ig~~~~~~---------~~~~~~~--------~~~~~~~~~~~f~~~~~~~~~~~~ 299 (1117)
.-|...+ ++++|+|+|||++..+||++++.. .+|..+. +..+.+++++.|+....+. +.+.
T Consensus 219 ~Ef~k~~~~~~~~i~~~~~~~~~~v~~eta~~~eI~~~i~~~lP~~r~~~~~~~~~~~s~~ir~~~~~~~~~~~~-~~l~ 297 (1145)
T KOG0988|consen 219 LEFKKDFLADLLYIRTTDLRSRTGVGIETASCDEIRVPIWKDLPYNRYNGSTAEEFRLSVWIRLGSKYDVSSAQL-VPLN 297 (1145)
T ss_pred eeeecccccccceeeecceeccccccceeeccceecchhhccCCcccccccchhhhhhhhheeccccccccccee-eecc
Confidence 2233333 589999999999999999999922 2232111 3357788888888554433 3332
Q ss_pred ccCCCcchHHHHHHHHHh------cCCCCcccchHHHHHHHhcCCc---HHHHHHHHHHHhCCCCccchhHHHHHHHHHH
Q 048783 300 YKEGVSFEIMFLVNAVMH------KGILNQHQLSDSFFDLLRCQPR---EVIVTALKHIYSYKRPVFDAYEKLKDVQECL 370 (1117)
Q Consensus 300 ~~~~l~f~v~fql~~lv~------~g~l~~~~l~~~f~~~l~~~~~---~~~~~~l~~l~~~~~~~~d~~~~l~~~~~~~ 370 (1117)
...+|.+.|.+|+|++ .|.+...+...+|+.++..... .+..+.|++|.....+||||..+.+.++++.
T Consensus 298 --~~~~~git~~~e~l~~r~slv~dq~~~~~~~~~~f~~l~~~~~~~d~~v~~a~LekL~~~~~~cfd~~~~~k~i~~~~ 375 (1145)
T KOG0988|consen 298 --DERDFGITHLYECLVSRGSLVKDQVLLEEAHLLEFLGLLRHKVLGDDNVLEAKLEKLLKLSTKCFDPYCQYKKIAKLN 375 (1145)
T ss_pred --ccccccceeehhhhhcccchhhhhHHhhhhHHHHHHHHHhhhhccchhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 2345555555555555 5555555566789999887654 6677889999999999999999999888776
Q ss_pred HhCCCCCCCCCCCCCceEEEEEEEccCccccc-c----------CCCCCCCcEEEEEEecCCCCcccccccccccccccc
Q 048783 371 IKNPKLNEGPKNIDDIAEVRRLVITPTKAYWF-L----------ESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVK 439 (1117)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~vrrv~iTPTri~~~-p----------~y~~~~drFLRV~F~DE~~~~l~~~~~~~~~~~~~r 439 (1117)
..|.++.....+..+++.|+||+|||||+||+ | +|..+++|||||+|+||+++ ++.+.++
T Consensus 376 ~~ng~~~~~~~~~~g~~~vrk~v~TPtrv~~~~PE~~~gNRVlR~f~~~~t~~lRvtF~De~~~-~~ir~~S-------- 446 (1145)
T KOG0988|consen 376 PSNGKLVTTKEIMEGLRRVRKVVFTPTRVYLLAPEVEMGNRVLRKFDKDSTRFLRVTFRDEDNK-LKIRTLS-------- 446 (1145)
T ss_pred cccCccccchhhhhcceeEEEEEEcCceeEecCchhhhcchhheeccccCceEEEEEEEccccc-cccccCC--------
Confidence 56766444444678999999999999999986 4 89999999999999999996 4433322
Q ss_pred ccccCCcccchhHHHHHHHHhcCCeeEcCeEEEEEEecccccccceEEEEecCCCCCHHHHHHHhcCCC-CCCHHHHHHH
Q 048783 440 DITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT-AKNIAKYAAR 518 (1117)
Q Consensus 440 ~~~~~~~~~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~~s~wFfa~~~~~t~~~Ir~wmG~F~-~~~vaK~aAR 518 (1117)
...++.+|.||..+|++||+||+|.|+||||||||||+||.||++.....++++||.|||+|. +.|++|||||
T Consensus 447 ------~~~~t~l~~rv~~~L~~Gi~v~~r~y~FL~~s~sQlRdngy~m~~~s~~~~i~~iR~wmG~F~~i~nv~K~aAR 520 (1145)
T KOG0988|consen 447 ------TGSRTKLDMRVNSYLTDGISVANRRYEFLAFSNSQLRDNGYFMARFSDKTKIEDIREWMGDFRDIDNVPKLAAR 520 (1145)
T ss_pred ------cchhhHHHHHHHHHHhcccEEccceeEEEEecccccccCceEEeecCCCccHHHHHHHhcchhhccCHHHHHhh
Confidence 122689999999999999999999999999999999999999999988899999999999997 8999999999
Q ss_pred hhccCCCcceeeee-CCCceeeecCccccC----CccccccccccCHHHHHHHHHHhCCCCCCCCceEEEeecCceeeEE
Q 048783 519 MGLCFSSTHATVEI-PPTEVDHELPDIKRN----GYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVA 593 (1117)
Q Consensus 519 lgq~FSsT~~tv~v-~~~~i~~~I~DI~~~----g~~FSDG~G~IS~~lA~~I~~~l~l~~~~~PSAfQiR~gG~KGvL~ 593 (1117)
||||||+|+.|..+ +...+ ..+|||+++ +||||||||+||.++|++|++++++.. .+||||||||||+||||+
T Consensus 521 mGqCFs~Sr~T~~~~~~~~~-~~~~DI~~g~~g~~y~FSDGvG~iS~~~a~~vsq~~~~~~-~vPsaFQiR~~G~KGVva 598 (1145)
T KOG0988|consen 521 MGQCFSQSRGTGYVLERLDR-MCPPDIEGGKRGNNYCFSDGVGMISLQFAREVSQKRKFGK-AVPSAFQIRYGGYKGVVA 598 (1145)
T ss_pred cCcceecccccccccccccc-ccCCcccccccCCceeecCCcccccHHHHHHHHHHHcccc-cCChheeeeccCCcceEE
Confidence 99999999999887 55566 589999976 899999999999999999999999974 599999999999999999
Q ss_pred ecCCCCCCCeEEEcCCccCcccCCceeEEeecCCCCcCcccHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHhhCHHH
Q 048783 594 CWPAKDDGIRMSLRGSMKKFKSCHTSLEICSWTRFQPGFLNRQIITLLSTLNVSDEIFWTVQASMASKL--NLMLVASDV 671 (1117)
Q Consensus 594 vdp~~~~g~~I~lR~Sm~KF~s~~~~LEIv~~S~~~p~~LNRQlI~lLs~lGVp~evF~~lq~~~l~~l--~~~l~d~~~ 671 (1117)
|||... ..+.+|.||.||.|.|..+||+.|++++||+||||+|+||+.+||++++|+++|+..++.- ...+.....
T Consensus 599 v~Ps~~--~~~~~~~~~~~s~S~n~~~~v~~~~~f~~~~lnr~lI~Lls~~gv~n~~F~~il~~vle~~r~~~n~~e~~~ 676 (1145)
T KOG0988|consen 599 VDPSMD--KVLKLRDSMNKSQSFNSLLEVTPSSKFQPAFLNRQLITLLSYLGVLNKPFINILDQVLEKQRRITNRIEELL 676 (1145)
T ss_pred eCccHh--hhhhhhhhhhhhhhhcceeeeeeccCCccccccHHHHHHHHhcCccchHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999864 3788999999999999999999999999999999999999999999999999999999843 333444444
Q ss_pred HHHHHHhcc-cccccHHHHHHHCCCCCCCchhhhhcch----------------------------hcccccCCCeEEEe
Q 048783 672 AFEVLTASC-AEQGNTAAIMLSAGFKPQTEPHLQGMLT----------------------------YELGELKECQCFIQ 722 (1117)
Q Consensus 672 A~~~L~~~~-~e~~~~~~~ml~~Gf~~~~ePflr~lL~----------------------------DetG~L~~GeVfvq 722 (1117)
+.+.|.-.+ .++++.++.++..++.+..||||++||. ||||+|++||||||
T Consensus 677 ~~~~l~~~~~m~~en~a~~~l~~~~~~D~EPflr~mL~~~~k~~~~~~kek~ripv~~Gr~lmGvvDETG~L~ygQVfVq 756 (1145)
T KOG0988|consen 677 DRAALNYGEQMDDENIAAMILKGFPRIDSEPFLRSMLSSLLKFTLQLLKEKIRIPVDLGRSLMGVVDETGILKYGQVFVQ 756 (1145)
T ss_pred HHHHhhhhhhccchHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHhcccccCcCCceeEeeeccccccccCeEEEE
Confidence 555554333 3556667777777777888999999975 99999999999999
Q ss_pred ecccccccccccCCCccccccceeEEeeeEEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccCCCCC
Q 048783 723 VSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDL 802 (1117)
Q Consensus 723 ~s~~~~~~~~~~~g~~~~~~~~~~vi~G~VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lSGGDL 802 (1117)
++.+. .+ ...+...|++|+|+||||||||||||||++||++|+||||+|||||||||+||||+|||||||
T Consensus 757 ~t~~~-~~---------~~~~~~~vitG~VlvtKNPcLhpGDVRVl~AV~vp~L~h~~dvVvFPQkGpRphpdE~aGsDL 826 (1145)
T KOG0988|consen 757 YTKTI-RN---------SDSGRKEVITGKVLVTKNPCLHPGDVRVLKAVYVPALEHMVDVVVFPQKGPRPHPDEMAGSDL 826 (1145)
T ss_pred Ecccc-cc---------cccCCceEEEeeEEEecCCCCCCCceEEEEeeccHHHHhhcCEEEcCCCCCCCCccccccCCC
Confidence 99862 21 112335899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeecCCCCCCCCCCCCCCCCCCCCCCccccccc-------------ccchhhHHHHHHHhhccCcCCCCChhHH
Q 048783 803 DGDLYYVTWDENLIPPSKKSCPPMECTPAEAKPLTCHVN-------------HQNLGQICNAHVVHADRSEYGAFDENCI 869 (1117)
Q Consensus 803 DGD~Y~ViWD~~Lip~~~~~~~P~~y~~~~~~~l~r~v~-------------~~~LG~IsnaHl~~AD~~~~G~~d~~Cl 869 (1117)
|||+|||||||+|+|+.. .+||+|++.+++.+.+.++ .++||+|+|||+++||+ +|++++.|+
T Consensus 827 DGDeYfViWDqkLL~~~~--~epmd~~~~~sk~~~~~~~~~~m~effv~yL~~DslG~isnAhl~~aD~--~G~~~~~Cl 902 (1145)
T KOG0988|consen 827 DGDEYFVIWDQKLLPPRN--EEPMDSSSEKSKILDGRVPLDEMSEFFVEYLKEDSLGLISNAHLANADV--YGLFSDVCL 902 (1145)
T ss_pred CCceEEEEeChhhccCcC--CCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHhhccccchhh--cchhhHHHH
Confidence 999999999999999974 4999999988877766554 34999999999999998 899999999
Q ss_pred HHHHHHHhccCCCCCCCeeecCCCCCCCCCCCCCCcccCCcccccchhhHHHHHHhhhhccccccccccccCCCCCCCCC
Q 048783 870 LLAKLAATAVDSPKTGKIVTMPSHLKPKKYPDFMEIEEYQTYKSNKILGRLYRQIKGAYDENISVSSEVDINPVDIHYDT 949 (1117)
Q Consensus 870 ~LA~L~S~AVDf~KTG~~v~~p~~L~p~~~PdFM~k~~~~~Y~S~kiLG~LYr~v~~~~~~~~~~~~~~~~~~~~~~~D~ 949 (1117)
.||++||+||||||||....||..++|++|||||++.++++|.|++++|||||+++.+ ++.. ..++....+.+++||+
T Consensus 903 ~LA~k~~~AVDF~KsG~d~~~~~~ek~e~~PDfm~~~d~p~Y~S~~l~GkLfR~~~ai-d~~~-~~~e~~~~~~~i~yD~ 980 (1145)
T KOG0988|consen 903 ELAKKHSQAVDFPKSGADESMPEKEKPERYPDFMEKTDKPTYYSERLCGKLFREAKAI-DAPL-KGSEERSEQVEVEYDE 980 (1145)
T ss_pred HHHHhhcccccccccCCcccccchhchhhcchhhhCCCCceeecchhhhHHHHHHHhh-cchh-hcCccccCcccccCCc
Confidence 9999999999999999999999999999999999999999999999999999988664 2221 2223223344588999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---ee--EEecCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 048783 950 DLEVPGSVDFTADARNQKCSYDGQLNGLLGQYNVNRKE---FR--HIWSMPKYNSRKQGELQERLKHSYSAFRKEFRQVF 1024 (1117)
Q Consensus 950 ~l~v~g~~~~l~~A~~~k~~Yd~~l~~lm~~y~i~tE~---sG--~i~~~~~~~~~~~~~~~e~i~~~~~~l~~efr~~f 1024 (1117)
+|+++||++|++.|+++++.|+.+|++||++|||++|+ || .++.|+++++.+..+ +++...+.++++.|.++|
T Consensus 981 ~l~v~gFe~yme~a~~~~~~y~~qL~slm~~ygi~~E~eI~sG~~~~ddms~~~t~~~~e--~~~~~l~~~~r~~~~qef 1058 (1145)
T KOG0988|consen 981 DLEVDGFEHYMERAKKQVASYNGQLRSLMDFYGISTEGEIFSGILDQDDMSFYNTERMIE--LKLERLVLKLREKFFQEF 1058 (1145)
T ss_pred ccCcCCcHHHHHHHHHHHhhhhhHHHHHHHHhCccchhhhhccCccccchhhhcccccch--hhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998 88 667788888776554 677888888998888888
Q ss_pred Hhh------cCCCccCchhhhhhHHHHHHHHHH-HhcchhhhhhhhhhhccCcCCCcceeeecchHHHHHHHHHhhcccc
Q 048783 1025 EKM------NSDFELSDNEKNVLYEQKASAWYQ-VTYHREWVKKSLDLLEQGSARSVVLLSFAWIANDYLARIKIKCQEM 1097 (1117)
Q Consensus 1025 ~~~------~~~~~~~~~e~~~~~~~kAsAwY~-Vty~~~~~~~~~~~~~~~~~~~~~~lSFpWi~~d~L~~Ik~~~~~~ 1097 (1117)
... .+.++-+..+ +.+.+||+|||+ ++|+... ..+..+.+||||||+|+|++||+. ..
T Consensus 1059 ~~y~~~~e~l~~fe~~~~e--E~~~kKa~aWY~v~~ye~~~-----------~~~~~~~~SF~wia~Dvl~~iK~~-~~- 1123 (1145)
T KOG0988|consen 1059 GAYKLEIEKLSCFEDSPEE--EFIMKKASAWYRVYRYEMAQ-----------AMRETRKLSFAWIAYDVLARIKQT-FL- 1123 (1145)
T ss_pred hhhcchhhhccccccCchh--HHHHHHHHHHHHHHHhhhhc-----------ccccCcccchHHHHHHHHHHHHHH-HH-
Confidence 521 1222211111 226789999999 7776422 223456779999999999999998 32
Q ss_pred cccCCCchhHHHHHHhh
Q 048783 1098 ANIGKSKPVNNLARYVA 1114 (1117)
Q Consensus 1098 ~~~~~~~~~~~~~~~~~ 1114 (1117)
..+...+|+.++.+-..
T Consensus 1124 ~~~g~a~p~~tl~e~~~ 1140 (1145)
T KOG0988|consen 1124 GAIGGANPVYTLEELHR 1140 (1145)
T ss_pred HhhcccCchHHHHHhhH
Confidence 37889999999876543
No 2
>PF05183 RdRP: RNA dependent RNA polymerase; InterPro: IPR007855 This entry represents various eukaryotic RNA-dependent RNA polymerases (RDRP; 2.7.7.48 from EC), such as RCRP-1, RDRP-2 and RDRP-6. These enzymes are involved in the amplification of regulatory microRNAs during post-transcriptional gene silencing []; they are also required for transcriptional gene silencing. Double-stranded RNA has been shown to induce gene silencing in diverse eukaryotes and by a variety of pathways []. These enzymes also play a role in the RNA interference (RNAi) pathway, which is important for heterochromatin formation, accurate chromosome segregation, centromere cohesion and telomere function during mitosis and meiosis. RDRP enzymes are highly conserved in most eukaryotes, but are missing in archaea and bacteria. The core catalytic domain of RDRP enzymes is structurally similar to the beta' subunit of DNA-dependent RNA polymerases (DDRP), however the other domains of DDRP show no similarity to those of RDRP.; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2J7O_A 2J7N_A.
Probab=100.00 E-value=1.8e-111 Score=1019.13 Aligned_cols=485 Identities=47% Similarity=0.804 Sum_probs=333.5
Q ss_pred CCCCCCCcEEEEEEecCCCCccccccccccccccccccccCCcccchhHHHHHHHHhcCCeeEcCeEEEEEEeccccccc
Q 048783 404 ESKDVADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRD 483 (1117)
Q Consensus 404 ~y~~~~drFLRV~F~DE~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~ 483 (1117)
+| ++|+||||+|+||++..+..+. ..++.|++++|++||.|+||+|+|||+|+||+|+
T Consensus 19 ~f--g~~~Flrv~f~d~~~~~~~~~~--------------------~~~~~~~~~~l~~gi~i~~~~y~fl~~S~sqlr~ 76 (579)
T PF05183_consen 19 RF--GSDRFLRVSFPDENSSSLRFSP--------------------RVLGRRIRKFLKNGIKIGGRHYRFLGFSNSQLRD 76 (579)
T ss_dssp HH---GGGEEEEEEE-TT---SSS-T--------------------TSTTEEEEEEEEEE-------------------E
T ss_pred Ee--CCCCEEEEEEEcCCCCcccccc--------------------hhHHHHHHHHHhccceECcEEEEEeecCCccccC
Confidence 55 6788999999999987653211 1156788899999999999999999999999999
Q ss_pred ceEEEEecC----CCCCHHHHHHHhcCCC-CCCH-HHHHHHhhccCCCcceeeeeCCCceeeecCcc-ccCCcccccccc
Q 048783 484 HSAWFFSKV----GETSVLDIKNWMGEFT-AKNI-AKYAARMGLCFSSTHATVEIPPTEVDHELPDI-KRNGYVFSDGIG 556 (1117)
Q Consensus 484 ~s~wFfa~~----~~~t~~~Ir~wmG~F~-~~~v-aK~aARlgq~FSsT~~tv~v~~~~i~~~I~DI-~~~g~~FSDG~G 556 (1117)
|+||||+++ ..+++++|++|||+|+ ++++ +|++||||||||+|.+++.+.+.+| +.|+|| .+++|+||||||
T Consensus 77 ~~~~f~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~K~~aRl~l~fS~T~~~~~i~~~~~-~~i~Di~~~~~~~ftDG~G 155 (579)
T PF05183_consen 77 HSCWFFAEDDGDRPPLTVEDIRNWMGDFSNIQSIPAKYAARLGLCFSSTVPTVVIPPDEI-EVIPDITSRNGYVFTDGCG 155 (579)
T ss_dssp EEEEEEEEE----B---HHHHHHHHH-GGGTSBH-HHHHHTTHHHHSB-EEEEE--GGGE-E-SS--TTSS--BSSTTEE
T ss_pred CeEEEEecCCccCCcccHHHHHHhcccccccccHHHHHHHHHHHhccCccceEEecccce-EEcCCcCCCCCccccCCch
Confidence 999999998 5689999999999998 4776 9999999999999999999999999 599999 899999999999
Q ss_pred ccCHHHHHHHHHHhCCCCCCCCceEEEeecCceeeEEecCCCCCCCeEEEcCCccCc----ccCCceeEEeecCC-CCcC
Q 048783 557 KITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKDDGIRMSLRGSMKKF----KSCHTSLEICSWTR-FQPG 631 (1117)
Q Consensus 557 ~IS~~lA~~I~~~l~l~~~~~PSAfQiR~gG~KGvL~vdp~~~~g~~I~lR~Sm~KF----~s~~~~LEIv~~S~-~~p~ 631 (1117)
+||++||++||+.+++. +.|||||||+|||||||+|||+. +|.+|+|||||+|| ++.+++||||++|+ +.++
T Consensus 156 ~IS~~la~~I~~~l~~~--~~PsA~QiR~~G~KGml~vdp~~-~~~~I~lr~Sm~Kf~~~~~~~~~~lei~~~s~~~~~~ 232 (579)
T PF05183_consen 156 RISPDLARKIAEKLGLD--YVPSAFQIRIGGAKGMLVVDPTL-DGPWIQLRPSMIKFDEPWDSEHRTLEIVKYSRPPRPA 232 (579)
T ss_dssp EE-HHHHHHHHHHHT-S--S--SEEEEEETTEEEEEEE-TT------EEE-TTTB-S----SGGGSEEEEEEE-------
T ss_pred hhCHHHHHHHHHHcCCC--CCCeEEEEeccCceeEEEECCCC-CcceEEEehhhhhhccCcccccCeEEecccCCCCCcc
Confidence 99999999999999976 48999999999999999999987 67899999999999 77899999999998 8999
Q ss_pred cccHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhcccccccHHH--HHHHCCCCCCCchhhhhcch-
Q 048783 632 FLNRQIITLLSTLNVSDEIFWTVQASMASKLNLMLVASDVAFEVLTASCAEQGNTAA--IMLSAGFKPQTEPHLQGMLT- 708 (1117)
Q Consensus 632 ~LNRQlI~lLs~lGVp~evF~~lq~~~l~~l~~~l~d~~~A~~~L~~~~~e~~~~~~--~ml~~Gf~~~~ePflr~lL~- 708 (1117)
+||||+|+||+++|||+++|+++|+++++++..++.++..|.+++...+........ .|+.+||.+.++||++.++.
T Consensus 233 ~LN~q~I~iL~~~gv~~~~f~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~g~~~~~~pfl~~~l~~ 312 (579)
T PF05183_consen 233 YLNRQLITILEDLGVPDEVFLELQDEALEELRNILTDPDAARDLLSNQSRDGDFRLIRRQLLDAGFDPLNDPFLRSLLKA 312 (579)
T ss_dssp -B-TTTHHHHHHTBSS-HHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHS--HHHHHHHTHHHHTT--TTTBHHHHHHHHH
T ss_pred cccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhcCCCcchhHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876655443332 89999999999999988764
Q ss_pred ---------------------------hcccccCCCeEEEeecccccccccccCCCccccccceeEEeeeEEEEeCCCCC
Q 048783 709 ---------------------------YELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVINGFVVIAKNPCLR 761 (1117)
Q Consensus 709 ---------------------------DetG~L~~GeVfvq~s~~~~~~~~~~~g~~~~~~~~~~vi~G~VlVtRnPclH 761 (1117)
||||+|+|||||+|+|... .......+++|+|+|+||||+|
T Consensus 313 ~~~~~l~~~~~~~ri~v~~s~~l~gv~D~~g~L~~geV~~~~s~~~------------~~~~~~~~~~g~VlV~R~P~~~ 380 (579)
T PF05183_consen 313 LIKKKLKELKKKARIPVPKSRYLMGVPDPTGVLKEGEVFVQFSSDE------------ETGSQSQVLEGDVLVTRNPCLH 380 (579)
T ss_dssp HHHHHHHHHHHC--B--SSEEEEEEEE-TTS---TTEEEEEEEEEE------------EETTEEEEEE-EEEEE-SS--S
T ss_pred HHHHHHHhccceEEEEcCCCcEEEEeeCCcCCCCCCEEEEEecccc------------ccCCCcceeeeeEEEecCCccC
Confidence 9999999999999997211 1123378999999999999999
Q ss_pred CCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccCCCCCCCCeEEEeecCCCCCCCCC-----CCCCCCCCCCCCC--
Q 048783 762 PGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKK-----SCPPMECTPAEAK-- 834 (1117)
Q Consensus 762 PGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lip~~~~-----~~~P~~y~~~~~~-- 834 (1117)
|||||+|+||++|+|+||+||||||++|+||+|++|||||||||.||||||++||.++.+ ..+|+.|...+..
T Consensus 381 pgDir~~~av~~p~L~~l~~vIVF~~~G~r~~~~~lsGgDlDGD~~~V~wd~~lv~~~~~~~~~~~~~p~~~~~~~~~~~ 460 (579)
T PF05183_consen 381 PGDIRKVKAVDKPELRHLKDVIVFSTKGDRPLPSELSGGDLDGDEYFVCWDPRLVEPFKNPPPPKSEEPMNYESEKVSDS 460 (579)
T ss_dssp GGGEEEEEE---GGGTT--SEEEE-S-SSS-HHHHTTT--SSS-EEEEE--HHHHHTB-----------TTTSEE---BH
T ss_pred cCceeEEEeeccHHHcccCCEEEeCCCCCCCchHHhcCCCCCCceEEEEeCHhhhhhhhccCcccCCCcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999655433 3456664332211
Q ss_pred -----cccc--------------cccccchhhHHHHHHHhhccCcCCCCChhHHHHHHHHHhccCCCCCCCeeecCCC-C
Q 048783 835 -----PLTC--------------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTMPSH-L 894 (1117)
Q Consensus 835 -----~l~r--------------~v~~~~LG~IsnaHl~~AD~~~~G~~d~~Cl~LA~L~S~AVDf~KTG~~v~~p~~-L 894 (1117)
.+.+ .++.+.||.|+|+|+++||+.. |+.|+.|++||+|||+||||+|||+++.++.. +
T Consensus 461 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~lG~~s~~h~~~~d~~~-g~~~~~~~~La~l~s~~vD~~KtG~~~~~~~~~~ 539 (579)
T PF05183_consen 461 SGDPKPLSRPVTEEDIQDFFLEFYINNDNLGLISNAHLAIADQSS-GIDSPECLKLAQLHSQAVDAPKTGVPVKLPRWPL 539 (579)
T ss_dssp HHHTT-SSHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHTTHHHHTEE--HHHHHS
T ss_pred ccCccccCccccHHHHHHHHHHhhcccCcHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhCccccCCCccccchhh
Confidence 1111 2345699999999999999865 99999999999999999999999999999887 8
Q ss_pred CCCCCCCCCCcccCCc-ccccchhhHHHHHHhhh
Q 048783 895 KPKKYPDFMEIEEYQT-YKSNKILGRLYRQIKGA 927 (1117)
Q Consensus 895 ~p~~~PdFM~k~~~~~-Y~S~kiLG~LYr~v~~~ 927 (1117)
+++.|||||+++.+.. |+|++|||+|||+|++.
T Consensus 540 ~~~~~P~~~~~~~~~~~y~S~~ilg~ly~~v~~~ 573 (579)
T PF05183_consen 540 KPPEYPDFMEKEDKKSYYKSTSILGQLYREVKEI 573 (579)
T ss_dssp S-----GGGSS-----SSS--SHHHHHHHTTH--
T ss_pred cCCCCChhhccccccccCCCccHHHHHHHHHHhh
Confidence 9999999999877655 79999999999999985
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.53 E-value=4.7e-07 Score=92.24 Aligned_cols=84 Identities=20% Similarity=0.351 Sum_probs=72.0
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
...++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ....++++||||+|++.|+|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~kGfaFV~F~~~e~A 89 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVD---------------------RETGRSRGFGFVNFNDEGAA 89 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEec---------------------CCCCCcceEEEEEECCHHHH
Confidence 35778999999999999999999998 899999999886 34578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
+.|+.... ...++|+.|+|..+.+.+
T Consensus 90 ~~Al~~ln--g~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 90 TAAISEMD--GKELNGRHIRVNPANDRP 115 (144)
T ss_pred HHHHHHcC--CCEECCEEEEEEeCCcCC
Confidence 99998653 257899999999654443
No 4
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.45 E-value=8.2e-07 Score=78.10 Aligned_cols=70 Identities=24% Similarity=0.379 Sum_probs=60.9
Q ss_pred EEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHH
Q 048783 13 VSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMD 92 (1117)
Q Consensus 13 v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~ 92 (1117)
|+|+|+|.+++.++|.++|+.. |.|..+++... .+ +..+++|||+|.+++.|..|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~---------------------~~-~~~~~~a~v~f~~~~~a~~al~ 57 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKN---------------------KD-GQSRGFAFVEFSSEEDAKRALE 57 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS-SBEEEEEEEES---------------------TT-SSEEEEEEEEESSHHHHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEee---------------------ec-cccCCEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999995 99999999985 33 5789999999999999999999
Q ss_pred hhcccceeccCeeee
Q 048783 93 AAEHMELFLNGRALK 107 (1117)
Q Consensus 93 ~a~~~~l~~~~~~Lk 107 (1117)
... ...++|+.|+
T Consensus 58 ~~~--~~~~~g~~l~ 70 (70)
T PF14259_consen 58 LLN--GKEIDGRKLR 70 (70)
T ss_dssp HHT--TEEETTEEEE
T ss_pred HCC--CcEECCEEcC
Confidence 985 4888999885
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.37 E-value=2.1e-06 Score=74.49 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=61.3
Q ss_pred EEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHH
Q 048783 13 VSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMD 92 (1117)
Q Consensus 13 v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~ 92 (1117)
|+|+|+|..++.++|+++|+. .|.|-.+.+..+ ..++.+++|||+|.+.++|..|++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~----------------------~~~~~~~~a~V~F~~~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRN----------------------SSGKSKGYAFVEFESEEDAEKALE 57 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEE----------------------TTSSEEEEEEEEESSHHHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhccccccccc----------------------ccccccceEEEEEcCHHHHHHHHH
Confidence 689999999999999999999 999988888873 246789999999999999999999
Q ss_pred hhcccceeccCeeee
Q 048783 93 AAEHMELFLNGRALK 107 (1117)
Q Consensus 93 ~a~~~~l~~~~~~Lk 107 (1117)
... ...++|+.||
T Consensus 58 ~l~--g~~~~~~~ir 70 (70)
T PF00076_consen 58 ELN--GKKINGRKIR 70 (70)
T ss_dssp HHT--TEEETTEEEE
T ss_pred HcC--CCEECccCcC
Confidence 663 3788888875
No 6
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.28 E-value=2.8e-06 Score=93.57 Aligned_cols=78 Identities=10% Similarity=0.155 Sum_probs=67.5
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
++.+||+|+|+|..++.++|++||+. +|.|..|+|-.+ ...+++|||+|.++++|
T Consensus 2 ~~~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d------------------------~~~~GfAFVtF~d~eaA 56 (260)
T PLN03120 2 MQVRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSE------------------------NERSQIAYVTFKDPQGA 56 (260)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeec------------------------CCCCCEEEEEeCcHHHH
Confidence 56789999999999999999999977 899999999765 23578999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
..|+.+-+ -.|+|+.|+|.+...
T Consensus 57 e~AllLnG---~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 57 ETALLLSG---ATIVDQSVTITPAED 79 (260)
T ss_pred HHHHHhcC---CeeCCceEEEEeccC
Confidence 99998764 367999999995443
No 7
>smart00360 RRM RNA recognition motif.
Probab=98.17 E-value=7.5e-06 Score=69.44 Aligned_cols=71 Identities=30% Similarity=0.442 Sum_probs=59.9
Q ss_pred EeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHHhh
Q 048783 15 VGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAA 94 (1117)
Q Consensus 15 v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~~a 94 (1117)
|+|+|..++.++|+++|+. .|.|..|.+... +..++++++|||+|.+.++|..|+...
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~---------------------~~~~~~~~~a~v~f~~~~~a~~a~~~~ 58 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRD---------------------KDTGKSKGFAFVEFESEEDAEKALEAL 58 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeC---------------------CCCCCCCceEEEEeCCHHHHHHHHHHc
Confidence 5899999999999999986 899999988865 223678899999999999999999876
Q ss_pred cccceeccCeeeeee
Q 048783 95 EHMELFLNGRALKVS 109 (1117)
Q Consensus 95 ~~~~l~~~~~~Lkv~ 109 (1117)
. ...++|+.|+|+
T Consensus 59 ~--~~~~~~~~~~v~ 71 (71)
T smart00360 59 N--GKELDGRPLKVK 71 (71)
T ss_pred C--CCeeCCcEEEeC
Confidence 4 356789988874
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.16 E-value=6.6e-06 Score=94.21 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=68.4
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|.|+|+|..++.+||+++|+. +|.|..|+|..+ ...+++++||||+|.+++.|..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~-~G~i~~v~i~~d---------------------~~~g~s~g~afV~f~~~~~A~~ 60 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTS-IGEIESCKLVRD---------------------KVTGQSLGYGFVNYVRPEDAEK 60 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHc-cCCEEEEEEEEc---------------------CCCCccceEEEEEECcHHHHHH
Confidence 579999999999999999999999 999999999886 3346899999999999999999
Q ss_pred HHHhhcccceeccCeeeeee
Q 048783 90 AMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|+.... ...++|+.|+|.
T Consensus 61 Ai~~l~--g~~l~g~~i~v~ 78 (352)
T TIGR01661 61 AVNSLN--GLRLQNKTIKVS 78 (352)
T ss_pred HHhhcc--cEEECCeeEEEE
Confidence 998763 378899999997
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.14 E-value=8.1e-06 Score=93.44 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=67.9
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
+|.|+|+|..++.++|+++|+. .|.|.+|+|..+ +.++++++||||+|.+.++|..|+
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~d---------------------~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIRD---------------------LTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeEc---------------------CCCCCccceEEEEECCHHHHHHHH
Confidence 5999999999999999999987 899999999987 456889999999999999999999
Q ss_pred HhhcccceeccCeeeeeec
Q 048783 92 DAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 92 ~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.... ...|+|+.|+|+-
T Consensus 329 ~~ln--G~~~~gr~i~V~~ 345 (352)
T TIGR01661 329 LSLN--GYTLGNRVLQVSF 345 (352)
T ss_pred HHhC--CCEECCeEEEEEE
Confidence 8764 3678999999983
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=98.13 E-value=1.3e-05 Score=68.32 Aligned_cols=72 Identities=25% Similarity=0.411 Sum_probs=61.4
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
+|.|+|+|...+.++|.++|+. .|.|-.+++... + +.++++|||+|.++++|..|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~---------------------~--~~~~~~~~v~f~~~~~a~~a~ 56 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKD---------------------T--GKSKGFAFVEFESEEDAEKAI 56 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecC---------------------C--CCCCceEEEEeCCHHHHHHHH
Confidence 5899999999999999999986 898888888875 1 467899999999999999998
Q ss_pred HhhcccceeccCeeeeee
Q 048783 92 DAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 92 ~~a~~~~l~~~~~~Lkv~ 109 (1117)
.... ...++|+.++|+
T Consensus 57 ~~~~--~~~~~~~~i~v~ 72 (72)
T smart00362 57 EALN--GTKLGGRPLRVE 72 (72)
T ss_pred HHhC--CcEECCEEEeeC
Confidence 8654 256788888874
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.09 E-value=1.1e-05 Score=93.20 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=70.0
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+...++|.|+|+|.+++.++|+++|+. +|.|..|+|..+ ...+++++||||+|++++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~i~~d---------------------~~tg~srGyaFVeF~~~e 160 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCRIMRD---------------------YKTGYSFGYAFVDFGSEA 160 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCccCcEEEEEEccHH
Confidence 3446789999999999999999999997 899999999876 445789999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeec
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
+|..|+..-. ...+.++.|+|+.
T Consensus 161 ~A~~Ai~~Ln--G~~l~gr~i~V~~ 183 (346)
T TIGR01659 161 DSQRAIKNLN--GITVRNKRLKVSY 183 (346)
T ss_pred HHHHHHHHcC--CCccCCceeeeec
Confidence 9999997542 3677899999983
No 12
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.00 E-value=3.8e-05 Score=65.79 Aligned_cols=73 Identities=27% Similarity=0.370 Sum_probs=62.3
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
+|.|+|+|..++.++|+++|+.. |.+..+.+..+ + ..+..++|+|+|.++++|..|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~-g~i~~~~~~~~---------------------~-~~~~~~~~~v~f~s~~~a~~a~ 57 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF-GKVESVRIVRD---------------------K-DTKSKGFAFVEFEDEEDAEKAL 57 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc-CCEEEEEEeeC---------------------C-CCCcceEEEEEECCHHHHHHHH
Confidence 47899999999999999999995 99988888875 2 1267899999999999999999
Q ss_pred HhhcccceeccCeeeeee
Q 048783 92 DAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 92 ~~a~~~~l~~~~~~Lkv~ 109 (1117)
+.... ..++|+.++|+
T Consensus 58 ~~~~~--~~~~~~~~~v~ 73 (74)
T cd00590 58 EALNG--KELGGRPLRVE 73 (74)
T ss_pred HHhCC--CeECCeEEEEe
Confidence 98653 45889988876
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.99 E-value=1.8e-05 Score=91.11 Aligned_cols=81 Identities=25% Similarity=0.297 Sum_probs=72.1
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
-....-|.||+||.++..+||+.++|+ +|.+|-+||+-+ +..+.+|+||||.|.+-+.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEk-iG~I~elRLMmD---------------------~~sG~nRGYAFVtf~~Ke~ 137 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEK-IGKIYELRLMMD---------------------PFSGDNRGYAFVTFCTKEE 137 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHh-ccceeeEEEeec---------------------ccCCCCcceEEEEeecHHH
Confidence 346678999999999999999999999 999999999997 5568999999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeec
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|+.|+..-. +.-+-.|+.|+|+.
T Consensus 138 Aq~Aik~ln-n~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 138 AQEAIKELN-NYEIRPGKLLGVCV 160 (506)
T ss_pred HHHHHHHhh-CccccCCCEeEEEE
Confidence 999999875 34567999999993
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.97 E-value=2.6e-05 Score=90.26 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=69.6
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|.+++.++|+++|+. .|.|..|+|..+ ....+++++|||+|++.|.|.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d---------------------~~tg~~kG~aFV~F~~~e~A~ 249 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRD---------------------KLTGTPRGVAFVRFNKREEAQ 249 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeec---------------------CCCCccceEEEEEECCHHHHH
Confidence 3578999999999999999999976 899999999876 335788999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+..-....+--++++|+|..+.+.
T Consensus 250 ~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 250 EAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHhCCCccCCCceeEEEEECCcc
Confidence 99998754323335589999966554
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.94 E-value=5e-05 Score=90.33 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=69.7
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+.-.+||+|+|+|..++.++|++||+. +|.|-.|+|..+ ...++++++|||+|.+.+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~-~G~v~~v~i~~d---------------------~~~~~skg~afVeF~~~e 142 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSK-VGKVRDVQCIKD---------------------RNSRRSKGVAYVEFYDVE 142 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeec---------------------CCCCCcceEEEEEECCHH
Confidence 3445789999999999999999999988 899999999876 345789999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
+|..|+.+.+ ..+.|++|.|...
T Consensus 143 ~A~~Al~l~g---~~~~g~~i~v~~~ 165 (457)
T TIGR01622 143 SVIKALALTG---QMLLGRPIIVQSS 165 (457)
T ss_pred HHHHHHHhCC---CEECCeeeEEeec
Confidence 9999998764 4678899998744
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.85 E-value=7.8e-05 Score=91.43 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=68.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
...+|+|||++..++.++|.++|+. +|.|..|+|..+ ...+++++||||+|.++++|.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~-fG~I~sV~I~~D---------------------~~TgkskGfAFVeF~s~e~A~ 163 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWD---------------------PATGKHKGFAFVEYEVPEAAQ 163 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHc-cCCEEEEEEeec---------------------CCCCCcCCeEEEEeCcHHHHH
Confidence 3468999999999999999999998 899999999876 445789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeec
Q 048783 89 RAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.|+.... ...++|+.|+|..
T Consensus 164 ~Ai~~ln--G~~i~GR~IkV~r 183 (612)
T TIGR01645 164 LALEQMN--GQMLGGRNIKVGR 183 (612)
T ss_pred HHHHhcC--CeEEecceeeecc
Confidence 9998663 3788999999983
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.83 E-value=5.3e-05 Score=92.86 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=69.0
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...+++++||||+|.+.++|..
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D---------------------~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARA---------------------PTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEec---------------------CCCCCcCCeEEEEECCHHHHHH
Confidence 478999999999999999999997 899999999886 3456899999999999999999
Q ss_pred HHHhhcccceeccCeeeeee
Q 048783 90 AMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|+.... .+-++|+.|+|.
T Consensus 262 AI~amN--g~elgGr~LrV~ 279 (612)
T TIGR01645 262 AIASMN--LFDLGGQYLRVG 279 (612)
T ss_pred HHHHhC--CCeeCCeEEEEE
Confidence 999885 478999999998
No 18
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.80 E-value=9e-05 Score=80.86 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=65.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-..||+|+|++..++.++|.+||.. +|.|..|+|-.+ .+..++|||+|.++++|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D------------------------~et~gfAfVtF~d~~aae 58 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRS------------------------GEYACTAYVTFKDAYALE 58 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecC------------------------CCcceEEEEEECCHHHHH
Confidence 3479999999999999999999998 999999999876 345579999999999999
Q ss_pred HHHHhhcccceeccCeeeeeec
Q 048783 89 RAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.|+.|.|. .|+++++.|.+
T Consensus 59 tAllLnGa---~l~d~~I~It~ 77 (243)
T PLN03121 59 TAVLLSGA---TIVDQRVCITR 77 (243)
T ss_pred HHHhcCCC---eeCCceEEEEe
Confidence 99999874 56888999983
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.68 E-value=0.00011 Score=89.76 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=65.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
..++|.|+|+|.+++.++|.++|+. +|.|+.|+|..+ ..+++++||||+|++.|+|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~-~G~I~~vrl~~D----------------------~sG~sRGfaFV~F~~~e~A~ 113 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEK-AGPIYELRLMMD----------------------FSGQNRGYAFVTFCGKEEAK 113 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHh-hCCEEEEEEEEC----------------------CCCCccceEEEEeCCHHHHH
Confidence 5689999999999999999999998 899999999875 24689999999999999999
Q ss_pred HHHHhhcccceeccCeeeeee
Q 048783 89 RAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
.|+..... ..+.+++.|+|.
T Consensus 114 ~Ai~~lng-~~i~~Gr~l~V~ 133 (578)
T TIGR01648 114 EAVKLLNN-YEIRPGRLLGVC 133 (578)
T ss_pred HHHHHcCC-CeecCCcccccc
Confidence 99998743 344566766665
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.65 E-value=0.00016 Score=88.60 Aligned_cols=80 Identities=18% Similarity=0.334 Sum_probs=68.0
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
.+|+|||+|.+++.++|.++|.. +|.|..|+|..+ ...+++.+||||.|.+.+.|..|
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~-~G~v~~v~v~~d---------------------~~t~~s~G~afV~F~~~~~A~~A 58 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKP-FGPVLSVRVCRD---------------------SVTRRSLGYGYVNFQNPADAERA 58 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCCcceEEEEEECCHHHHHHH
Confidence 37999999999999999999987 799999999876 44578999999999999999999
Q ss_pred HHhhcccceeccCeeeeeecCCCC
Q 048783 91 MDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
++.... -.++|++++|.....+
T Consensus 59 l~~ln~--~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 59 LETMNF--KRLGGKPIRIMWSQRD 80 (562)
T ss_pred HHHhCC--CEECCeeEEeeccccc
Confidence 987743 4578999999744333
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.63 E-value=0.00013 Score=87.90 Aligned_cols=75 Identities=23% Similarity=0.319 Sum_probs=58.4
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhcc---c--------cEEEEEEEecCCCCCCCCcccccccccccccCCCCCcc
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEV---G--------GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVE 74 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~---G--------~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (1117)
.+.-.++|+|||+|..++.++|++||.+.. | .|..+.+ .+.+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------------------------~~~k 223 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------------------------NKEK 223 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------------------------CCCC
Confidence 445678999999999999999999999852 1 1222211 2457
Q ss_pred ceEEEEecChHHHHHHHHhhcccceeccCeeeeeec
Q 048783 75 PHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 75 ~~afV~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
+||||+|.++|.|+.|+.+- ...|+|.+|+|..
T Consensus 224 g~afVeF~~~e~A~~Al~l~---g~~~~g~~l~v~r 256 (509)
T TIGR01642 224 NFAFLEFRTVEEATFAMALD---SIIYSNVFLKIRR 256 (509)
T ss_pred CEEEEEeCCHHHHhhhhcCC---CeEeeCceeEecC
Confidence 89999999999999999643 3788899999983
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.62 E-value=0.0002 Score=85.20 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=69.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|+++|+. .|.|-.|+|..+ +..++++++|||+|.+.++|..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d---------------------~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRD---------------------PETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEc---------------------CCCCccceEEEEEECCHHHHHH
Confidence 589999999999999999999986 899999999876 3446899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|+..... ..++|+.|+|..+.
T Consensus 244 A~~~l~g--~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 244 ALEVMNG--FELAGRPIKVGYAQ 264 (457)
T ss_pred HHHhcCC--cEECCEEEEEEEcc
Confidence 9986642 77899999999655
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.62 E-value=0.00017 Score=88.34 Aligned_cols=81 Identities=17% Similarity=0.284 Sum_probs=70.5
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
...++|+|+|+|.+++.++|+++|+. .|.|..|+|..+ ..++++++|||.|.+.++|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~-~G~i~~~~i~~d----------------------~~g~~~g~gfV~f~~~~~A 339 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSE-CGEITSAKVMLD----------------------EKGVSRGFGFVCFSNPEEA 339 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHh-cCCeEEEEEEEC----------------------CCCCcCCeEEEEeCCHHHH
Confidence 35678999999999999999999997 899999999885 2468999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
..|+.... ...++|++|+|..+..
T Consensus 340 ~~A~~~~~--g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 340 NRAVTEMH--GRMLGGKPLYVALAQR 363 (562)
T ss_pred HHHHHHhc--CCeeCCceeEEEeccC
Confidence 99998764 3789999999985543
No 24
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.60 E-value=0.00023 Score=75.47 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=71.4
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
..+|.|+|+|..++.++|.++|.. .|.|.++++..+ ...++++++|||.|.+.+.|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d---------------------~~~~~~~g~~~v~f~~~~~~~~ 172 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRD---------------------RETGKSRGFAFVEFESEESAEK 172 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeec---------------------cccCccCceEEEEecCHHHHHH
Confidence 589999999999999999999998 899999999886 3468999999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|+.... ...|.|+.|+|....
T Consensus 173 a~~~~~--~~~~~~~~~~v~~~~ 193 (306)
T COG0724 173 AIEELN--GKELEGRPLRVQKAQ 193 (306)
T ss_pred HHHHcC--CCeECCceeEeeccc
Confidence 999985 489999999999543
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.57 E-value=0.00024 Score=85.65 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=67.7
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|+++|+. .|.|..+.|... ...+++++||||+|.++++|..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~~~~~~---------------------~~~g~~~g~afv~f~~~~~a~~ 352 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLES-FGDLKAFNLIKD---------------------IATGLSKGYAFCEYKDPSVTDV 352 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEec---------------------CCCCCcCeEEEEEECCHHHHHH
Confidence 468999999999999999999998 899999998765 3347789999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|+.... ...++|+.|+|..+.
T Consensus 353 A~~~l~--g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 353 AIAALN--GKDTGDNKLHVQRAC 373 (509)
T ss_pred HHHHcC--CCEECCeEEEEEECc
Confidence 998653 357889999998553
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.50 E-value=0.00027 Score=85.26 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=65.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|.|+|+|.+++.+||.++|+. .|.|-.|.|..+ +++|||+|.+.|+|..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~-fG~V~~v~i~~~---------------------------k~~afVef~~~e~A~~ 53 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIP-FGPVSYVMMLPG---------------------------KRQALVEFEDEESAKA 53 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEECC---------------------------CCEEEEEeCchHHHHH
Confidence 478999999999999999999998 999999988743 3699999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|+.....+...++|++|+|..+.
T Consensus 54 Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 54 CVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred HHHHhhcCCceEcCeEEEEEecC
Confidence 99875434578999999998554
No 27
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.43 E-value=0.00031 Score=74.63 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=67.8
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
-+++.-+|..+-..++..||-+..|.|.|.|+.-. .++++|.+||||+|+++|-|..|.
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRn---------------------krTGNSKgYAFVEFEs~eVA~IaA 109 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRN---------------------KRTGNSKGYAFVEFESEEVAKIAA 109 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecc---------------------cccCCcCceEEEEeccHHHHHHHH
Confidence 45688889999999999999998899999999655 678999999999999999999999
Q ss_pred HhhcccceeccCeeeeee
Q 048783 92 DAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 92 ~~a~~~~l~~~~~~Lkv~ 109 (1117)
+.+. .++|.++.|+++
T Consensus 110 ETMN--NYLl~e~lL~c~ 125 (214)
T KOG4208|consen 110 ETMN--NYLLMEHLLECH 125 (214)
T ss_pred HHhh--hhhhhhheeeeE
Confidence 9995 489999999998
No 28
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.39 E-value=0.00099 Score=80.52 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=64.7
Q ss_pred eeeEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 9 VDTQVSVGGFDR-DIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 9 ~~~~v~v~gf~~-~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
-.++|+|+|+|. .++.++|.+.|+. .|.|.+|+|... .+++|||||.+.++|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~-yG~V~~vki~~~--------------------------~~g~afV~f~~~~~A 326 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCV-YGNVERVKFMKN--------------------------KKETALIEMADPYQA 326 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC--------------------------CCCEEEEEECCHHHH
Confidence 357999999997 6999999999997 799999998764 358999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
..|+..... ..+.|+.|+|+.+-..
T Consensus 327 ~~Ai~~lng--~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 327 QLALTHLNG--VKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHHhCC--CEECCceEEEEEcccc
Confidence 999986542 4668999999855433
No 29
>smart00361 RRM_1 RNA recognition motif.
Probab=97.09 E-value=0.0018 Score=57.75 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=48.5
Q ss_pred HHHHHHHHHhc---cccEEEEE-EEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHHhhcccce
Q 048783 24 AVDLVKYLENE---VGGVWRCR-LKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMEL 99 (1117)
Q Consensus 24 a~~l~~~lE~~---~G~v~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~~a~~~~l 99 (1117)
.++|.++|+.+ .|.|.++. +..+ + ...+++++++|||+|.+++.|..|+..... -
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~--~-----------------~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g--~ 60 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYID--N-----------------VGYENHKRGNVYITFERSEDAARAIVDLNG--R 60 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeC--C-----------------CCCCCCCcEEEEEEECCHHHHHHHHHHhCC--C
Confidence 46888999843 47888775 5443 0 011367999999999999999999997642 5
Q ss_pred eccCeeeeee
Q 048783 100 FLNGRALKVS 109 (1117)
Q Consensus 100 ~~~~~~Lkv~ 109 (1117)
.++|+.|+++
T Consensus 61 ~~~gr~l~~~ 70 (70)
T smart00361 61 YFDGRTVKAE 70 (70)
T ss_pred EECCEEEEeC
Confidence 8889998874
No 30
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.08 E-value=0.0015 Score=70.73 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=65.4
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
-.+.-.|.|.|||.+=.+..++|.+|||+ .|++--.-|-++ ...++|++|+||.|.+.
T Consensus 7 ~~DT~~TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd---------------------~~t~rskGyGfVTf~d~ 64 (247)
T KOG0149|consen 7 FGDTTFTKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITD---------------------KNTGRSKGYGFVTFRDA 64 (247)
T ss_pred CCCceEEEEEEcCcccccchHHHHHHHHH-hCceEEEEEEec---------------------cCCccccceeeEEeecH
Confidence 35667899999999999999999999999 887554445554 34689999999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
|||++|..-.. -+++|+.-..-++.-
T Consensus 65 ~aa~rAc~dp~---piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 65 EAATRACKDPN---PIIDGRKANCNLASL 90 (247)
T ss_pred HHHHHHhcCCC---Ccccccccccchhhh
Confidence 99999976542 466666555544443
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=96.86 E-value=0.0045 Score=76.12 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=64.0
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|.|+|+|.+++.++|.+.|+...+.+..+.+..+ ..+..++++||||+|.+.++|..
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~--------------------~~~kgKnRGFAFVeF~s~edAa~ 197 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS--------------------AADKKKNRGFAFVEYESHRAAAM 197 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc--------------------ccccCccCceEEEEcCCHHHHHH
Confidence 4689999999999999999999997644444444332 12235789999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecC
Q 048783 90 AMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|+..-..+++.+.|+.|+|..+
T Consensus 198 AirkL~~gki~l~Gr~I~VdwA 219 (578)
T TIGR01648 198 ARRKLMPGRIQLWGHVIAVDWA 219 (578)
T ss_pred HHHHhhccceEecCceEEEEee
Confidence 9986555567888999998733
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.003 Score=69.49 Aligned_cols=97 Identities=16% Similarity=0.331 Sum_probs=75.2
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEE-----EecCC--C-----CCC---CCcc-----------------
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRL-----KTSCT--P-----SES---YPNF----------------- 56 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l-----~~~~~--~-----~~~---~~~~----------------- 56 (1117)
--+|++|||.|++||.+=|...|.+ +|.|..|.+ |.-|+ | |.+ +|-|
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~q-ig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF 83 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQ-IGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAF 83 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHh-ccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHh
Confidence 3589999999999998777776655 999988865 33343 2 111 2222
Q ss_pred ----cccccccccccCCCCCccceEEEEecChHHHHHHHHhhcccceeccCeeeeee
Q 048783 57 ----FIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 57 ----~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
||+|...|..++ +.||.+|+||-|-.-+.|+.|+..++ .-|||++.++--
T Consensus 84 ~pFGevS~akvirD~~-T~KsKGYgFVSf~~k~dAEnAI~~Mn--GqWlG~R~IRTN 137 (321)
T KOG0148|consen 84 APFGEVSDAKVIRDMN-TGKSKGYGFVSFPNKEDAENAIQQMN--GQWLGRRTIRTN 137 (321)
T ss_pred ccccccccceEeeccc-CCcccceeEEeccchHHHHHHHHHhC--Ceeeccceeecc
Confidence 788877777766 78999999999999999999999985 369999999865
No 33
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.71 E-value=0.0048 Score=71.42 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=72.0
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
+.|.|+|||-++.-.+||+.+-+++|+|.-|+|.-+ ..+|+|+-|.|+|.++|+++.|
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D----------------------~~GK~rGcavVEFk~~E~~qKa 102 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD----------------------ESGKARGCAVVEFKDPENVQKA 102 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc----------------------cCCCcCCceEEEeeCHHHHHHH
Confidence 559999999999999999999999999999999985 4589999999999999999999
Q ss_pred HHhhcccceeccCeeeeeecCCCC
Q 048783 91 MDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
+..-. +.-++|++|+|...++.
T Consensus 103 ~E~ln--k~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 103 LEKLN--KYEVNGRELVVKEDHDE 124 (608)
T ss_pred HHHhh--hccccCceEEEeccCch
Confidence 99874 57899999999955543
No 34
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0047 Score=67.27 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=62.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
..||+|+|.+.+.+..||.+.|-. .|.|.||-|--+ ..++.+++||||+|.+-|-|..
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylard---------------------K~TG~~kGFAFVtF~sRddA~r 246 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARD---------------------KETGLSKGFAFVTFESRDDAAR 246 (270)
T ss_pred cceeEEecCccccChhHHHHHhhc-cCccceeEEEEc---------------------cccCcccceEEEEEecHHHHHH
Confidence 468999999999999999766654 899999988876 5579999999999999999999
Q ss_pred HHHhhcccceeccCeeeeee
Q 048783 90 AMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|++--. ..=+++.-|+|-
T Consensus 247 AI~~Ln--G~gyd~LILrvE 264 (270)
T KOG0122|consen 247 AIADLN--GYGYDNLILRVE 264 (270)
T ss_pred HHHHcc--CcccceEEEEEE
Confidence 998542 245666666664
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=96.52 E-value=0.01 Score=69.63 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=64.1
Q ss_pred cccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 4 REKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 4 ~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
.+.+.-..+|+|||++-.|+.+||..-|.. .|.|.+|.|-.. .+ |+||||.|.+
T Consensus 4 ees~~~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIpRE-----------------------TG--RGFAFVEMss 57 (759)
T PLN03213 4 KSSGGGGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFVRT-----------------------KG--RSFAYIDFSP 57 (759)
T ss_pred cccCCcceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEecc-----------------------cC--CceEEEEecC
Confidence 334456689999999999999999999998 599999999732 12 9999999999
Q ss_pred h--HHHHHHHHhhcccceeccCeeeeeec
Q 048783 84 S--TYITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 84 ~--e~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
. +++..|+..-.. --+.|+.|||..
T Consensus 58 dddaEeeKAISaLNG--AEWKGR~LKVNK 84 (759)
T PLN03213 58 SSTNSLTKLFSTYNG--CVWKGGRLRLEK 84 (759)
T ss_pred CcHHHHHHHHHHhcC--CeecCceeEEee
Confidence 8 677788876643 467888999983
No 36
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.42 E-value=0.012 Score=49.92 Aligned_cols=54 Identities=33% Similarity=0.461 Sum_probs=42.7
Q ss_pred HHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHHhhcccceeccCeee
Q 048783 27 LVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRAL 106 (1117)
Q Consensus 27 l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~~a~~~~l~~~~~~L 106 (1117)
|.++|+. .|.|..+.+... + +++|||+|.+.++|..|+..-. ...++|+.|
T Consensus 1 L~~~f~~-fG~V~~i~~~~~-------------------------~-~~~a~V~f~~~~~A~~a~~~l~--~~~~~g~~l 51 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKK-------------------------K-RGFAFVEFASVEDAQKAIEQLN--GRQFNGRPL 51 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETT-------------------------S-TTEEEEEESSHHHHHHHHHHHT--TSEETTEEE
T ss_pred ChHHhCC-cccEEEEEEEeC-------------------------C-CCEEEEEECCHHHHHHHHHHhC--CCEECCcEE
Confidence 5667777 699988888653 1 7999999999999999998653 245799999
Q ss_pred eee
Q 048783 107 KVS 109 (1117)
Q Consensus 107 kv~ 109 (1117)
+|+
T Consensus 52 ~V~ 54 (56)
T PF13893_consen 52 KVS 54 (56)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.39 E-value=0.0062 Score=63.85 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=65.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-..+|+|||.|.++-.+|+.+.|-. .|.|.-++||.. -...|||||+|+++..|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK~r------------------------~g~ppfafVeFEd~RDAe 59 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELKNR------------------------PGPPPFAFVEFEDPRDAE 59 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhh-hcceEEEEeccC------------------------CCCCCeeEEEecCccchh
Confidence 3568999999999999999998876 799999999986 357899999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
-|+-. ++.+=|+|.-|+|..+.
T Consensus 60 DAiyg--RdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 60 DAIYG--RDGYDYDGCRLRVEFPR 81 (241)
T ss_pred hhhhc--ccccccCcceEEEEecc
Confidence 88865 34588999999998543
No 38
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.19 E-value=0.014 Score=66.42 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=69.2
Q ss_pred ccccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEec
Q 048783 3 EREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFA 82 (1117)
Q Consensus 3 ~~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~ 82 (1117)
+..++.+-+|++|+|.-..++..+|.+.|.. .|.+--+++... ++-|||+|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~---------------------------~~CAFv~ft 272 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPR---------------------------KGCAFVTFT 272 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeecc---------------------------cccceeeeh
Confidence 3456678899999999889999999999998 898888888764 348999999
Q ss_pred ChHHHHHHHHhhcccceeccCeeeeeecC
Q 048783 83 TSTYITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 83 ~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|-+||+.|+...-. .|+++|..|++.=+
T Consensus 273 TR~aAE~Aae~~~n-~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 273 TREAAEKAAEKSFN-KLVINGFRLKIKWG 300 (377)
T ss_pred hhHHHHHHHHhhcc-eeeecceEEEEEeC
Confidence 99999999998864 89999999998733
No 39
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.019 Score=68.39 Aligned_cols=81 Identities=27% Similarity=0.337 Sum_probs=71.1
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-..||-|-|.|-+++.++|+.-|-. .|.|--..|-.. +.+++|.+-|||||-++.+|.
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV~~---------------------k~T~~skGtAFv~Fkt~~~~~ 348 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIVKD---------------------KDTGHSKGTAFVKFKTQIAAQ 348 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHh-hccceeEEEEec---------------------cCCCCcccceEEEeccHHHHH
Confidence 3479999999999999999999976 998877777765 557899999999999999999
Q ss_pred HHHHhh----cccceeccCeeeeeecC
Q 048783 89 RAMDAA----EHMELFLNGRALKVSLG 111 (1117)
Q Consensus 89 ~a~~~a----~~~~l~~~~~~Lkv~~~ 111 (1117)
.++.+| +-+.++|.|+.|+|.++
T Consensus 349 ~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 349 NCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred HHHHhcCccCCCceEEEeccEEeeeec
Confidence 999998 66669999999999854
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=96.07 E-value=0.013 Score=68.26 Aligned_cols=71 Identities=27% Similarity=0.297 Sum_probs=60.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-|.-++|-|++.++|.+-|++-|+++ |.|.|+ |+ .|-||||||+.-++|-
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~-G~veRV--kk---------------------------~rDYaFVHf~eR~dav 307 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEF-GKVERV--KK---------------------------PRDYAFVHFAEREDAV 307 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhc-cceEEe--ec---------------------------ccceeEEeecchHHHH
Confidence 46778999999999999999999997 887654 43 4569999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
.||.... .--++|++|-|.++
T Consensus 308 kAm~~~n--gkeldG~~iEvtLA 328 (506)
T KOG0117|consen 308 KAMKETN--GKELDGSPIEVTLA 328 (506)
T ss_pred HHHHHhc--CceecCceEEEEec
Confidence 9999885 46899999999964
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=96.07 E-value=0.014 Score=69.48 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=72.3
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
..|+|||+|-.++.++|.+.+.. +|.|.-.|+.-+ +..++.++|||++|.+.|.|+.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D---------------------~~tG~~~G~~f~~~~~~~~~~~a 76 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYD---------------------RETGKPKGFGFCEFTDEETAERA 76 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeeccc---------------------ccCCCcCceeeEecCchhhHHHH
Confidence 68999999999999999999996 899999999987 56789999999999999999999
Q ss_pred HHhhcccceeccCeeeeeecCCCCCc
Q 048783 91 MDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
+..-. ..=++|+.|+|.-+..++.
T Consensus 77 ~~~lN--g~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 77 IRNLN--GAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred HHhcC--CcccCCceEEeecccccch
Confidence 88653 3678999999997776663
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=95.96 E-value=0.012 Score=61.77 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=65.5
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
..||+|||+|..++.+-|.+.|-+ +|.|-.+++=.+ .-...-.+||||+|-+.|.|..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkD---------------------rv~~~~qGygF~Ef~~eedadY 66 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKD---------------------RVTQKHQGYGFAEFRTEEDADY 66 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchh---------------------hhcccccceeEEEEechhhhHH
Confidence 468999999999999999999887 899887776543 1134567999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|+..-. -.-|-|++|||+-.+
T Consensus 67 Aikiln--~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 67 AIKILN--MVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHH--HHHhcCceeEEEecc
Confidence 999875 256889999999666
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.025 Score=62.58 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=66.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
-+|||||||++.++.+++.+-|-. .|.+--+|+... .+||||.|.+-|+|.+
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk~---------------------------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFKD---------------------------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CceEEeCCcCccccHHHHHHhccc-CCcceEEEEecc---------------------------cceEEEEecchhhHHH
Confidence 579999999998888888888766 899999999864 5899999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCCCc
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
|+-.... -=++|+.+|-+=+-+.+.
T Consensus 216 AIv~mNn--tei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 216 AIVQMNN--TEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHhcC--ceeCceEEEEeccccCCC
Confidence 9998854 467899999987777765
No 44
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.021 Score=67.08 Aligned_cols=77 Identities=21% Similarity=0.420 Sum_probs=65.1
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
+.|.|-|+|.+++-++|.++|.. +|.|--|.|.++ + ..|.++ ||||+++++|+.|
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~---------------------~--~g~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSE-FGNILSCKVATD---------------------E--NGSKGY-FVQFESEESAKKA 131 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEc---------------------C--CCceee-EEEeCCHHHHHHH
Confidence 33899999999999999999988 999999999997 2 349999 9999999999999
Q ss_pred HHhhcccceeccCeeeeeecCCCC
Q 048783 91 MDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
++.-. ..+++++.+-|.+....
T Consensus 132 i~~~n--g~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 132 IEKLN--GMLLNGKKIYVGLFERK 153 (369)
T ss_pred HHHhc--CcccCCCeeEEeeccch
Confidence 99763 36777888887644433
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=95.08 E-value=0.049 Score=62.11 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=66.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-...|||.-+-.+.+..|+|.-||. .|.+-.|.|... +...+-++|+|++|.+..+-.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~---------------------pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARA---------------------PTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHh-hcceeeEEeecc---------------------CCCCCccceeeEEeccccchH
Confidence 3468999999999999999999998 999999999876 444677899999999999999
Q ss_pred HHHHhhccccee-ccCeeeeee
Q 048783 89 RAMDAAEHMELF-LNGRALKVS 109 (1117)
Q Consensus 89 ~a~~~a~~~~l~-~~~~~Lkv~ 109 (1117)
.|+.-.. |+ +||+||+|-
T Consensus 267 eAiasMN---lFDLGGQyLRVG 285 (544)
T KOG0124|consen 267 EAIASMN---LFDLGGQYLRVG 285 (544)
T ss_pred HHhhhcc---hhhcccceEecc
Confidence 9987763 65 999999997
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=94.93 E-value=0.049 Score=63.56 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=76.1
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-+-...||-||++.+.+||.++||. -|.|+-|-|-.+ ...+.+++..||-|.+.|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~-yg~V~einl~kD---------------------k~t~~s~gcCFv~~~trk~a 89 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEK-YGNVYEINLIKD---------------------KSTGQSKGCCFVKYYTRKEA 89 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHH-hCceeEEEeecc---------------------cccCcccceEEEEeccHHHH
Confidence 33445679999999999999999999 799999999887 33678999999999999999
Q ss_pred HHHHHhhcccc-eeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeeecC
Q 048783 88 TRAMDAAEHME-LFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVTQ 143 (1117)
Q Consensus 88 ~~a~~~a~~~~-l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 143 (1117)
-.|+++--+.+ |-=..++++|..+.... . +. .++-.|.||++-..
T Consensus 90 ~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~------e-r~----~~e~KLFvg~lsK~ 135 (510)
T KOG0144|consen 90 DEAINALHNQKTLPGMHHPVQVKYADGER------E-RI----VEERKLFVGMLSKQ 135 (510)
T ss_pred HHHHHHhhcccccCCCCcceeecccchhh------h-cc----ccchhhhhhhcccc
Confidence 99999875322 33355677777322221 1 11 35567888886543
No 47
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=94.67 E-value=0.095 Score=55.01 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=55.0
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccc---cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVG---GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G---~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
..+.|||||++..++..||..-|-. .| .||+.+ ...+||||+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvAr-----------------------------nPPGfAFVEFed~R 58 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVAR-----------------------------NPPGFAFVEFEDPR 58 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHh-cCcceeEEEee-----------------------------cCCCceEEeccCcc
Confidence 4789999999999999999665544 56 366544 36789999999998
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.|.-|...-.- --+-|.-++|.+....+
T Consensus 59 DA~DAvr~LDG--~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 59 DAEDAVRYLDG--KDICGSRIRVELSTGRP 86 (195)
T ss_pred cHHHHHhhcCC--ccccCceEEEEeecCCc
Confidence 88888775421 24556678887544443
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=94.46 E-value=0.11 Score=56.52 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=64.1
Q ss_pred EEEEeCCCccccHHHHHHHHHhc---ccc-EEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENE---VGG-VWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~---~G~-v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
|+||-|....+..+||+.=|... .|. +....+|| .+.|+-|||.|-+.++|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt-------------------------~KmRGQA~VvFk~~~~A 65 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT-------------------------PKMRGQAFVVFKETEAA 65 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC-------------------------CCccCceEEEecChhHH
Confidence 99999999999999999954443 454 44445555 48999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCCCcccc
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPENPFRLN 119 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~ 119 (1117)
..|+.+-. ...|-|+++++--+-.+..++-
T Consensus 66 s~A~r~l~--gfpFygK~mriqyA~s~sdii~ 95 (221)
T KOG4206|consen 66 SAALRALQ--GFPFYGKPMRIQYAKSDSDIIA 95 (221)
T ss_pred HHHHHHhc--CCcccCchhheecccCccchhh
Confidence 99999653 3889999999986666654453
No 49
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.061 Score=57.91 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=56.6
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
+-.+|+||||+...|+.+=|..-|-- .|.|..+.+-.+ .-..+-|+||||.|..+|.|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlD---------------------yesqkHRgFgFVefe~aEDA 65 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLD---------------------YESQKHRGFGFVEFEEAEDA 65 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhcccc-ccchhhcccccc---------------------hhcccccceeEEEeeccchh
Confidence 45689999999888887766554432 355444333322 22467899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeee
Q 048783 88 TRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
..|++-+...+|+ |+.|+|-
T Consensus 66 aaAiDNMnesEL~--GrtirVN 85 (298)
T KOG0111|consen 66 AAAIDNMNESELF--GRTIRVN 85 (298)
T ss_pred HHHhhcCchhhhc--ceeEEEe
Confidence 9999998766554 6777776
No 50
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=94.06 E-value=0.093 Score=62.43 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=65.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
...+|+|.|+|.+++..+|+++|-. .|.|...+|... .+..+...||||.|.+.+++.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr---------------------~~~~~~~~fgFV~f~~~~~~~ 344 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVR---------------------SPGGKNPCFGFVEFENAAAVQ 344 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhh-cccccccceEEe---------------------ccCCCcCceEEEEEeecchhh
Confidence 3455999999999999999999988 899999999886 112333499999999999999
Q ss_pred HHHHhhcccceeccCeeeeee
Q 048783 89 RAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
.|+.++ .+.+|++-|.|-
T Consensus 345 ~~i~As---p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 345 NAIEAS---PLEIGGRKLNVE 362 (419)
T ss_pred hhhhcC---ccccCCeeEEEE
Confidence 999999 599999999998
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=93.92 E-value=0.12 Score=62.05 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=66.5
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
..|+-|+++|.+++..+|.+||-. +|.|-.|=+-|. ..+...|+|+||.|+..|.+++
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~-vGPik~~~vVt~---------------------~gs~~~RGfgfVtFam~ED~qr 62 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSY-VGPIKHAVVVTN---------------------KGSSEKRGFGFVTFAMEEDVQR 62 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhc-ccCcceeEEecC---------------------CCcccccCccceeeehHhHHHH
Confidence 379999999999999999999966 999999999986 4456889999999999999999
Q ss_pred HHHhhcccceeccCeeeeee
Q 048783 90 AMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|+..+.+ --|+|+-|.|-
T Consensus 63 A~~e~~~--~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 63 ALAETEQ--SKFEGRILNVD 80 (678)
T ss_pred HHHHhhc--Ccccceecccc
Confidence 9999865 35788888776
No 52
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=93.58 E-value=0.32 Score=46.94 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=48.8
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVG-GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.|||.+-|||...+.++|.+.|++.+. .-.=.=|-.+ .+..-..|||||-|+++++|.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD---------------------f~~~~N~GYAFVNf~~~~~~~ 59 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID---------------------FKNKCNLGYAFVNFTSPQAAI 59 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee---------------------ccCCCceEEEEEEcCCHHHHH
Confidence 389999999999999999999999762 2111111111 234568899999999999999
Q ss_pred HHHHhhc
Q 048783 89 RAMDAAE 95 (1117)
Q Consensus 89 ~a~~~a~ 95 (1117)
.-.....
T Consensus 60 ~F~~~f~ 66 (97)
T PF04059_consen 60 RFYKAFN 66 (97)
T ss_pred HHHHHHc
Confidence 8877764
No 53
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=93.56 E-value=0.098 Score=60.06 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=67.5
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
+..|-|||+|.+++.+++++|||. .|.|....++.+ +...++|+|+||.|.+.+++..
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d---------------------~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYD---------------------KTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeec---------------------ccccccccceeeEeccccccce
Confidence 558999999999999999999999 789999999987 5567899999999999999988
Q ss_pred HHHhhcccceeccCeeeeeecCCCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
++..=- --|+++.+.|..+-..
T Consensus 155 v~~~~f---~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 155 VTLQKF---HDFNGKKVEVKRAIPK 176 (311)
T ss_pred ecccce---eeecCceeeEeeccch
Confidence 877643 2588888888744333
No 54
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=93.38 E-value=0.29 Score=55.12 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=67.7
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
-.|+-|+-+.-.++...|+..||. -|.+-+++|-.+ .-++++++||||.|....+-..
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d---------------------~vTgkskGYAFIeye~erdm~~ 158 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRD---------------------KVTGKSKGYAFIEYEHERDMKA 158 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHh-cCcceeEEEeee---------------------cccCCccceEEEEeccHHHHHH
Confidence 468899999999999999999998 799999999886 3468999999999999999999
Q ss_pred HHHhhcccceeccCeeeeee
Q 048783 90 AMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|-..|. .+.++|+-+-|-
T Consensus 159 AYK~ad--G~~Idgrri~VD 176 (335)
T KOG0113|consen 159 AYKDAD--GIKIDGRRILVD 176 (335)
T ss_pred HHHhcc--CceecCcEEEEE
Confidence 988886 488899888887
No 55
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.26 E-value=0.25 Score=59.21 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=72.0
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.+||-|||.|.-++|.||...+|...|.|--.-|.|+ ++++=..+-|.|.|.+-.|=.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD---------------------~k~KYPkGaGRVtFsnqqsYi 427 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD---------------------PKLKYPKGAGRVTFSNQQAYI 427 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC---------------------cccCCCCCcceeeecccHHHH
Confidence 35899999999999999999999999999999999998 667778899999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCe
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDV 133 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (1117)
.|+.++ +|++. -.+-. +|=-..||-|+|.
T Consensus 428 ~AIsar----------Fvql~-h~d~~-----KRVEIkPYv~eDq 456 (520)
T KOG0129|consen 428 KAISAR----------FVQLD-HTDID-----KRVEIKPYVMEDQ 456 (520)
T ss_pred HHHhhh----------eEEEe-ccccc-----eeeeecceecccc
Confidence 999885 55655 22222 2335568888885
No 56
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=93.05 E-value=0.21 Score=53.63 Aligned_cols=76 Identities=28% Similarity=0.355 Sum_probs=61.7
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhc--cccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENE--VGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~--~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.+++.|-|+---+++++|..-||.+ +|.|+.=+= .-+..+++||||.|-.-..|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrd------------------------r~Tr~sRgFaFVrf~~k~da 68 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRD------------------------RYTRQSRGFAFVRFHDKRDA 68 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccc------------------------cccccccceeEEEeeecchH
Confidence 4678899999999999999999984 245553222 23578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
+.|+++.. ..++.|+-|+|..+
T Consensus 69 edA~damD--G~~ldgRelrVq~a 90 (256)
T KOG4207|consen 69 EDALDAMD--GAVLDGRELRVQMA 90 (256)
T ss_pred HHHHHhhc--ceeeccceeeehhh
Confidence 99999885 37899999998844
No 57
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.22 E-value=0.31 Score=41.73 Aligned_cols=52 Identities=15% Similarity=0.349 Sum_probs=42.1
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
+.|.|+||+.+.. +++..+|.+ +|.+..+.+- ...+.++|+|.+..+|+.|
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~-fGeI~~~~~~---------------------------~~~~~~~l~y~~~~~ae~A 52 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFAS-FGEIVDIYVP---------------------------ESTNWMYLKYKSRKDAEKA 52 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHh-cCCEEEEEcC---------------------------CCCcEEEEEECCHHHHHhh
Confidence 6899999997765 666678887 9998886654 2457899999999999988
Q ss_pred H
Q 048783 91 M 91 (1117)
Q Consensus 91 ~ 91 (1117)
+
T Consensus 53 l 53 (53)
T PF14605_consen 53 L 53 (53)
T ss_pred C
Confidence 5
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=92.16 E-value=0.72 Score=51.07 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=67.1
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.|-+-|.=.|+..|.+|++..|-+ +|++-.|.|--+ .-.+.|-+|+||.+.+++.|.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~S-iGeiEScKLvRD---------------------KitGqSLGYGFVNYv~p~DAe 97 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGS-IGEIESCKLVRD---------------------KITGQSLGYGFVNYVRPKDAE 97 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhc-ccceeeeeeeec---------------------cccccccccceeeecChHHHH
Confidence 3455668889999999999999988 999999999876 225789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeee
Q 048783 89 RAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
.|++.- +.|.+-.+-+|||
T Consensus 98 ~Aintl--NGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 98 KAINTL--NGLRLQNKTIKVS 116 (360)
T ss_pred HHHhhh--cceeeccceEEEE
Confidence 999976 3599999999999
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=92.16 E-value=0.23 Score=58.54 Aligned_cols=84 Identities=17% Similarity=0.310 Sum_probs=71.5
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
.+-...++|.|.+..++.+.|.+.|.. .|.++.++|... .++++.+++||.|.+++.
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~-~GeI~s~kv~~~----------------------~~g~skG~gfV~fs~~ee 323 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSS-FGEITSAKVMVD----------------------ENGKSKGFGFVEFSSPEE 323 (369)
T ss_pred cccccccccccCccccchhHHHHHHhc-ccceeeEEEEec----------------------cCCCccceEEEEcCCHHH
Confidence 345678899999999999999999888 999999999984 357899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
|+.|+.-.. .-.+++++|.|.++....
T Consensus 324 A~~A~~~~n--~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 324 AKKAMTEMN--GRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred HHHHHHhhC--hhhhcCCchhhhHHhhhc
Confidence 999988874 357889999998666443
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=91.75 E-value=0.37 Score=54.89 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=67.1
Q ss_pred ccccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEec
Q 048783 3 EREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFA 82 (1117)
Q Consensus 3 ~~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~ 82 (1117)
.++...--+.++|+|||=..-.-||+.-||. +|.|--++|-.- -.+|.+|+||.|+
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfN-----------------------ERGSKGFGFVTme 144 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFN-----------------------ERGSKGFGFVTME 144 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHh-hCceeeEEEEec-----------------------cCCCCccceEEec
Confidence 3444456678999999999999999999998 999999999885 3689999999999
Q ss_pred ChHHHHHHHHhhcccceeccCeeeeeecC
Q 048783 83 TSTYITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 83 ~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
+++.|.+|-..-- .=.+.|+.+-|..+
T Consensus 145 n~~dadRARa~LH--gt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 145 NPADADRARAELH--GTVVEGRKIEVNNA 171 (376)
T ss_pred ChhhHHHHHHHhh--cceeeceEEEEecc
Confidence 9999999865432 23667777777733
No 61
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=91.71 E-value=0.41 Score=59.62 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=61.5
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.|.||+-|||+++.++..||+.-||+ +|.|-.+-+- ..|+||||--.+-.+|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li---------------------------~~R~cAfI~M~~RqdA 470 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILI---------------------------PPRGCAFIKMVRRQDA 470 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHh-cccceeEeec---------------------------cCCceeEEEEeehhHH
Confidence 38999999999999999999999999 8988776554 5789999999999999
Q ss_pred HHHHHhhcccceeccCeeeeee
Q 048783 88 TRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
..|+.+.. +.=++++.+|+.
T Consensus 471 ~kalqkl~--n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 471 EKALQKLS--NVKVADKTIKIA 490 (894)
T ss_pred HHHHHHHh--cccccceeeEEe
Confidence 99999875 355666666655
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=91.41 E-value=0.58 Score=47.10 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=61.2
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCC-CccceEEEEecChHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYE-KVEPHAFVHFATSTY 86 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~afV~F~~~e~ 86 (1117)
+-..||+|||+.-.++.+++-+.|-. +|.|-|+-.=.+ ++. ..-+|.||.|-+.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLd----------------------r~kktpCGFCFVeyy~~~d 90 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLD----------------------RFKKTPCGFCFVEYYSRDD 90 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccc----------------------cCCcCccceEEEEEecchh
Confidence 45689999999999999999998865 999998865553 333 445999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeee
Q 048783 87 ITRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|..|+.--.. -.+..+++++-
T Consensus 91 A~~Alryisg--trLddr~ir~D 111 (153)
T KOG0121|consen 91 AEDALRYISG--TRLDDRPIRID 111 (153)
T ss_pred HHHHHHHhcc--Ccccccceeee
Confidence 9999986532 46677777665
No 63
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=91.38 E-value=0.19 Score=57.79 Aligned_cols=74 Identities=22% Similarity=0.402 Sum_probs=61.5
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
.++-|||++-.++.+.|++|+ ...|.|+-|-++-+ +...++|+++||+|++++....+
T Consensus 7 ~KlfiGgisw~ttee~Lr~yf-~~~Gev~d~~vm~d---------------------~~t~rsrgFgfv~f~~~~~v~~v 64 (311)
T KOG4205|consen 7 GKLFIGGLSWETTEESLREYF-SQFGEVTDCVVMRD---------------------PSTGRSRGFGFVTFATPEGVDAV 64 (311)
T ss_pred cceeecCcCccccHHHHHHHh-cccCceeeEEEecc---------------------CCCCCcccccceecCCCcchhee
Confidence 467899999999999999999 55899999999987 33478999999999999999888
Q ss_pred HHhhcccceeccCeeeeee
Q 048783 91 MDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~ 109 (1117)
+..-. +-+.|+.+-+-
T Consensus 65 l~~~~---h~~dgr~ve~k 80 (311)
T KOG4205|consen 65 LNART---HKLDGRSVEPK 80 (311)
T ss_pred ecccc---cccCCccccce
Confidence 87753 56666655433
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=90.85 E-value=0.39 Score=53.95 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=60.8
Q ss_pred EEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHH
Q 048783 13 VSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMD 92 (1117)
Q Consensus 13 v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~ 92 (1117)
.-|||.|..+++.+|+..||. .|.|.-|.|-. .|||||-++..+|.-|+.
T Consensus 5 LFIGNLp~~~~~~elr~lFe~-ygkVlECDIvK-----------------------------NYgFVHiEdktaaedair 54 (346)
T KOG0109|consen 5 LFIGNLPREATEQELRSLFEQ-YGKVLECDIVK-----------------------------NYGFVHIEDKTAAEDAIR 54 (346)
T ss_pred hhccCCCcccchHHHHHHHHh-hCceEeeeeec-----------------------------ccceEEeecccccHHHHh
Confidence 468999999999999999998 89999999875 378999999999999998
Q ss_pred -hhcccceeccCeeeeeecCCCCC
Q 048783 93 -AAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 93 -~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
|- ++-|+|..++|. ++++.
T Consensus 55 NLh---gYtLhg~nInVe-aSksK 74 (346)
T KOG0109|consen 55 NLH---GYTLHGVNINVE-ASKSK 74 (346)
T ss_pred hcc---cceecceEEEEE-ecccc
Confidence 54 478999999998 77775
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.82 E-value=0.62 Score=57.68 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=64.1
Q ss_pred EEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHH
Q 048783 13 VSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMD 92 (1117)
Q Consensus 13 v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~ 92 (1117)
++|.|.+-+.+.++|.+-|.. .|.|--|+|...=-|- ++ -.|.+||||+|.++|+|+.|+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k-~G~VlS~~I~kkkd~~-----------------~k-~lSmGfgFVEF~~~e~A~~a~k 578 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSK-QGTVLSIEISKKKDPA-----------------NK-YLSMGFGFVEFAKPESAQAALK 578 (725)
T ss_pred hhhhcCCcccchhHHHHHHHh-cCeEEEEEEecccccc-----------------cc-ccccceeEEEecCHHHHHHHHH
Confidence 889999999999999999998 9999999998750000 11 2478999999999999999999
Q ss_pred hhcccceeccCeeeeeecCC
Q 048783 93 AAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 93 ~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+.+- =.+.|+.|.++..+
T Consensus 579 ~lqg--tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 579 ALQG--TVLDGHKLELKISE 596 (725)
T ss_pred HhcC--ceecCceEEEEecc
Confidence 8641 37899999888555
No 66
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=89.46 E-value=0.76 Score=54.92 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=59.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
..-.|++-|.|=.+|.+|+.+||+-.- .|..-=+.+. ..-.++.+=|||||+|.|+|+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~-Iv~~gi~l~~---------------------d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLE-IVPDGILLPM---------------------DQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCc-ccccceeeec---------------------cCCCCcccceEEEecCHHHHH
Confidence 455789999999999999999997621 2322111221 223568899999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.||..= +-.+|.+|+-|-.++...
T Consensus 160 ~Al~rh---re~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 160 IALGRH---RENIGHRYIEVFRSSRAE 183 (510)
T ss_pred HHHHHH---HHhhccceEEeehhHHHH
Confidence 999875 357899998887554443
No 67
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=89.06 E-value=0.63 Score=51.53 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=68.2
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
.++.-++.|.||+.+-.++..++..=+|. ||.+-+..+.++ ...++++++|+|.|.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d---------------------~~~~~~k~~~yvef~~~ 153 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKD---------------------KFRGHPKGFAYVEFSSY 153 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeec-cCCccceeeecc---------------------ccCCCcceeEEEecccH
Confidence 35567899999999999999997777777 999999999987 33456899999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
+++..|+.+-+ =-+.|..++|+.---+
T Consensus 154 ~~~~~ay~l~g---s~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 154 ELVEEAYKLDG---SEIPGPAIEVTLKRTN 180 (231)
T ss_pred hhhHHHhhcCC---cccccccceeeeeeee
Confidence 99999999543 2566677777744434
No 68
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=88.93 E-value=1.3 Score=41.81 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=46.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccc--cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVG--GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
|.+.++|+|.|....+..++..|-+... .+-.+.| +.+-|+|.|.+.++
T Consensus 1 ~~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----------------------------~~~tAilrF~~~~~ 51 (90)
T PF11608_consen 1 CHSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----------------------------SGGTAILRFPNQEF 51 (90)
T ss_dssp SSEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------------------------TT-EEEEESSHHH
T ss_pred CccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----------------------------eCCEEEEEeCCHHH
Confidence 4578999999999999999988876553 1333333 22569999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
|.+|..... ++-+||.+ +.|+-.+.
T Consensus 52 A~RA~KRme-gEdVfG~k-I~v~~~~~ 76 (90)
T PF11608_consen 52 AERAQKRME-GEDVFGNK-ISVSFSPK 76 (90)
T ss_dssp HHHHHHHHT-T--SSSS---EEESS--
T ss_pred HHHHHHhhc-ccccccce-EEEEEcCC
Confidence 999999885 57788765 45553433
No 69
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=88.41 E-value=1.2 Score=43.38 Aligned_cols=70 Identities=14% Similarity=0.333 Sum_probs=43.6
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
.|.+.|.+..++-++|++.|.. .|.|-=+. |.+-..-|+|.|.++++|+.|+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~-~g~V~yVD---------------------------~~~G~~~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQ-FGEVAYVD---------------------------FSRGDTEGYVRFKTPEAAQKAL 54 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-S-S--EEEEE-----------------------------TT-SEEEEEESS---HHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHh-cCCcceEE---------------------------ecCCCCEEEEEECCcchHHHHH
Confidence 5789999999999999999998 66443222 3456778999999999999999
Q ss_pred Hhhccc---ceeccCeeeeee
Q 048783 92 DAAEHM---ELFLNGRALKVS 109 (1117)
Q Consensus 92 ~~a~~~---~l~~~~~~Lkv~ 109 (1117)
..+... .|.+.+..++++
T Consensus 55 ~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 55 EKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp HHHHHTTTS-B-TTSSSEEEE
T ss_pred HHHHhccCCceEEcCceEEEE
Confidence 987654 567777766665
No 70
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=88.16 E-value=1 Score=53.98 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=60.8
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
+.-|++-|.|=+.|.+||.+||++.. |.. +++. ..+++..+-|+|+|++.|.+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~--I~~--~~~~---------------------r~~Gr~sGeA~Ve~~seedv~~ 64 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG--IEN--LEIP---------------------RRNGRPSGEAYVEFTSEEDVEK 64 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc--eeE--EEEe---------------------ccCCCcCcceEEEeechHHHHH
Confidence 45689999999999999999999933 333 4443 4468899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecC
Q 048783 90 AMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|+..- +--++.+|+-|-.+
T Consensus 65 Alkkd---R~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 65 ALKKD---RESMGHRYIEVFTA 83 (510)
T ss_pred HHHhh---HHHhCCceEEEEcc
Confidence 99875 46789999999844
No 71
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=87.64 E-value=0.49 Score=55.62 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=67.1
Q ss_pred ccccCce--eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEE
Q 048783 3 EREKTSV--DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVH 80 (1117)
Q Consensus 3 ~~~~~~~--~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~ 80 (1117)
+.|+|.. -+.+.||=+++.++..||.+-|-+ .|.|--|+|.-+ .++.||+.|||.
T Consensus 115 d~E~er~~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd----------------------~~~~sRGcaFV~ 171 (510)
T KOG0144|consen 115 DGERERIVEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRD----------------------PDGLSRGCAFVK 171 (510)
T ss_pred chhhhccccchhhhhhhccccccHHHHHHHHHh-hCccchhhheec----------------------ccccccceeEEE
Confidence 4455554 567789999999999999999877 899999999874 468999999999
Q ss_pred ecChHHHHHHHHhhcccc-eeccCeeeeee
Q 048783 81 FATSTYITRAMDAAEHME-LFLNGRALKVS 109 (1117)
Q Consensus 81 F~~~e~a~~a~~~a~~~~-l~~~~~~Lkv~ 109 (1117)
|++-|-|..|+.+..... .-=-+.||-|.
T Consensus 172 fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 172 FSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred EehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 999999999999875322 22234677776
No 72
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.60 E-value=2.5 Score=41.31 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=64.7
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.|.+-++|-|.|-++|++|.-+.|-. -|+|--+||=.. ...++-|||-.++-..|
T Consensus 16 evnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~------------------------k~TrGTAFVVYedi~dA 70 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNT------------------------KETRGTAFVVYEDIFDA 70 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCc------------------------cCcCceEEEEehHhhhH
Confidence 37888999999999999999998876 789999999765 57889999999999999
Q ss_pred HHHHHhhcccceeccCeeeeee
Q 048783 88 TRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
+.|.+--. ..-+.+.||.|-
T Consensus 71 k~A~dhls--g~n~~~ryl~vl 90 (124)
T KOG0114|consen 71 KKACDHLS--GYNVDNRYLVVL 90 (124)
T ss_pred HHHHHHhc--ccccCCceEEEE
Confidence 99998643 256788999886
No 73
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=85.38 E-value=1.2 Score=53.89 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=64.5
Q ss_pred EEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHH
Q 048783 13 VSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMD 92 (1117)
Q Consensus 13 v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~ 92 (1117)
++|||.--..++++|..-||. .|.|-.+-+-.+ ..++.+.+|+|+||..+|.|+.|+.
T Consensus 281 l~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d---------------------~~tG~skgfGfi~f~~~~~ar~a~e 338 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKD---------------------SETGRSKGFGFITFVNKEDARKALE 338 (549)
T ss_pred hhhcccccCchHHHHhhhccC-cccceeeeeccc---------------------cccccccCcceEEEecHHHHHHHHH
Confidence 789999999999999999998 787777766654 4478999999999999999999976
Q ss_pred hhcccceeccCeeeeeecCC
Q 048783 93 AAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 93 ~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.-. + |.+-|+.+||+...
T Consensus 339 ~ln-g-felAGr~ikV~~v~ 356 (549)
T KOG0147|consen 339 QLN-G-FELAGRLIKVSVVT 356 (549)
T ss_pred Hhc-c-ceecCceEEEEEee
Confidence 543 2 89999999999433
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=85.03 E-value=2.7 Score=46.00 Aligned_cols=85 Identities=22% Similarity=0.349 Sum_probs=62.1
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCc-cceEEEEecChHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKV-EPHAFVHFATSTY 86 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~afV~F~~~e~ 86 (1117)
..++|+-|+|.|.+|+++||-..|-.--|.- -|-||-+ .+.+++ .|.|||.|++...
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYE-gslLK~T---------------------sk~~~~~~pvaFatF~s~q~ 89 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYE-GSLLKYT---------------------SKGDQVCKPVAFATFTSHQF 89 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCcc-ceeeeec---------------------cCCCccccceEEEEecchHH
Confidence 3589999999999999999999998866732 2445543 222223 3999999999999
Q ss_pred HHHHHHhhcccceecc---CeeeeeecCCCCCc
Q 048783 87 ITRAMDAAEHMELFLN---GRALKVSLGPENPF 116 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~---~~~Lkv~~~~~~~~ 116 (1117)
|..|+++-. ...|+ ++.|.+.++-.|+-
T Consensus 90 A~aamnaLN--GvrFDpE~~stLhiElAKSNtK 120 (284)
T KOG1457|consen 90 ALAAMNALN--GVRFDPETGSTLHIELAKSNTK 120 (284)
T ss_pred HHHHHHHhc--CeeeccccCceeEeeehhcCcc
Confidence 999999863 35553 56677666666653
No 75
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=83.56 E-value=2.4 Score=43.20 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=64.5
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
=.|-|+|+-..++.+++.+-|-. .|.|--+.|..+ .+++-+.+||-|++++.+.|+.|
T Consensus 73 wIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLD---------------------RRtGy~KGYaLvEYet~keAq~A 130 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLD---------------------RRTGYVKGYALVEYETLKEAQAA 130 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhh-cccccceeeccc---------------------cccccccceeeeehHhHHHHHHH
Confidence 35789999999999999998876 799999999988 77788999999999999999999
Q ss_pred HHhhcccceeccCeeeeee
Q 048783 91 MDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~ 109 (1117)
+++.. .+-|-|+.++|-
T Consensus 131 ~~~~N--g~~ll~q~v~VD 147 (170)
T KOG0130|consen 131 IDALN--GAELLGQNVSVD 147 (170)
T ss_pred HHhcc--chhhhCCceeEE
Confidence 99874 355667777763
No 76
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=81.57 E-value=0.75 Score=55.56 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=73.3
Q ss_pred cccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 4 REKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 4 ~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
.++|...+||-+.=.....+..||-+||.. +|.|--++|-++ ....++.+.|-|.|.+
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~-~gkVrdVriI~D---------------------r~s~rskgi~Yvef~D 230 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSI-VGKVRDVRIIGD---------------------RNSRRSKGIAYVEFCD 230 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHh-hcCcceeEeecc---------------------ccchhhcceeEEEEec
Confidence 456677888888888889999999999987 999999999987 5567899999999999
Q ss_pred hHHHHHHHHhhcccceeccCeeeeeecCC
Q 048783 84 STYITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.++...|+.+.|+ .+.|.||.|.+..
T Consensus 231 ~~sVp~aiaLsGq---rllg~pv~vq~sE 256 (549)
T KOG0147|consen 231 EQSVPLAIALSGQ---RLLGVPVIVQLSE 256 (549)
T ss_pred ccchhhHhhhcCC---cccCceeEecccH
Confidence 9999999999986 7788999998544
No 77
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=81.41 E-value=2.8 Score=46.74 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=61.2
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
.+-|+-.|......||..-|-- .|.|-.-.+..+ +-++.|..|+||-|.++.||+.|+
T Consensus 287 NlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvD---------------------RATNQSKCFGFVSfDNp~SaQaAI 344 (371)
T KOG0146|consen 287 NLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVD---------------------RATNQSKCFGFVSFDNPASAQAAI 344 (371)
T ss_pred eEEEEeCchhhccHHHHHHhcc-ccceeeeeeeeh---------------------hccccccceeeEecCCchhHHHHH
Confidence 4667888998888888776655 677766677666 446789999999999999999999
Q ss_pred HhhcccceeccCeeeeee
Q 048783 92 DAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 92 ~~a~~~~l~~~~~~Lkv~ 109 (1117)
.+.. ..-+|=+.|||.
T Consensus 345 qAMN--GFQIGMKRLKVQ 360 (371)
T KOG0146|consen 345 QAMN--GFQIGMKRLKVQ 360 (371)
T ss_pred HHhc--chhhhhhhhhhh
Confidence 9984 478999999998
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=81.38 E-value=2.2 Score=49.21 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=54.5
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
.||||-|.-....+.+..-|.- .|.+.. |.-||.|- +.+-.+||||+++-||+|.+|+
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~P-FGPIKS--InMSWDp~-------------------T~kHKgFAFVEYEvPEaAqLAl 172 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDP-FGPIKS--INMSWDPA-------------------TGKHKGFAFVEYEVPEAAQLAL 172 (544)
T ss_pred heeeeeeEEEechHHHHhhccC-CCCcce--eecccccc-------------------cccccceEEEEEeCcHHHHHHH
Confidence 4677777766666666665554 555443 33445443 3467899999999999999999
Q ss_pred HhhcccceeccCeeeeee
Q 048783 92 DAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 92 ~~a~~~~l~~~~~~Lkv~ 109 (1117)
.-.. .-.+||+.|||-
T Consensus 173 EqMN--g~mlGGRNiKVg 188 (544)
T KOG0124|consen 173 EQMN--GQMLGGRNIKVG 188 (544)
T ss_pred HHhc--cccccCcccccc
Confidence 9884 478999999998
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=81.03 E-value=5 Score=44.89 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=62.9
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|.|.|.|..|+.+||++.|++.. .+.++-|- .++.+.+-+-|-|.|...+.|..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~-~~~r~~vh----------------------y~~~G~s~Gta~v~~~r~~DA~~ 139 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFG-ELKRVAVH----------------------YDRAGRSLGTADVSFNRRDDAER 139 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhc-cceEEeec----------------------cCCCCCCCccceeeecchHhHHH
Confidence 47899999999999999999999954 55555444 35678899999999999988988
Q ss_pred HHHhhcccceeccCeeeeeec
Q 048783 90 AMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|+..=. + ..++|+++++..
T Consensus 140 avk~~~-g-v~ldG~~mk~~~ 158 (243)
T KOG0533|consen 140 AVKKYN-G-VALDGRPMKIEI 158 (243)
T ss_pred HHHHhc-C-cccCCceeeeEE
Confidence 887653 3 889999999883
No 80
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=80.25 E-value=2 Score=48.61 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=60.8
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
....|++.|||+..+.++.||..-||. -|.|--|.|- +.||||||...|.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdiv-----------------------------kdy~fvh~d~~ed 124 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIV-----------------------------KDYAFVHFDRAED 124 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcc-cCCceeeeee-----------------------------cceeEEEEeeccc
Confidence 347899999999999999999999998 7888888765 4589999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.--. .-.|.|+.++|.++
T Consensus 125 a~~air~l~--~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 125 AVEAIRGLD--NTEFQGKRMHVQLS 147 (346)
T ss_pred hHHHHhccc--ccccccceeeeeee
Confidence 998885432 25789999999844
No 81
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=78.16 E-value=2.2 Score=47.40 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=52.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
..-++|+|+|++.+.+||...|-. .|.+---||..+ .-++.+|+-+||.|.--+.|+.
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~d---------------------qvtg~srGVgFiRFDKr~EAe~ 184 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVD---------------------QVTGLSRGVGFIRFDKRIEAEE 184 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhh---------------------cccceecceeEEEecchhHHHH
Confidence 346899999999999999988876 787777777776 3357899999999999999998
Q ss_pred HHHh
Q 048783 90 AMDA 93 (1117)
Q Consensus 90 a~~~ 93 (1117)
|+..
T Consensus 185 AIk~ 188 (360)
T KOG0145|consen 185 AIKG 188 (360)
T ss_pred HHHh
Confidence 8865
No 82
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=76.60 E-value=10 Score=36.97 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=45.6
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.+-|.|.|||.. .+..|.++|++ +|.+-...=-++ + ...+... ..-.......|+|.++.+|.+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~-----~--------~~~~~~~-~~~~~~NWi~I~Y~~~~~A~r 69 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLR-----S--------SSGINPY-PIPSGGNWIHITYDNPLSAQR 69 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG------------------------E-CCTTEEEEEESSHHHHHH
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccc-----c--------ccccccc-cCCCCCCEEEEECCCHHHHHH
Confidence 345889999999 77889999998 887644430011 0 0000000 011234568899999999999
Q ss_pred HHHhhcccceeccCeeee
Q 048783 90 AMDAAEHMELFLNGRALK 107 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lk 107 (1117)
||..-| .+++|..+-
T Consensus 70 AL~~NG---~i~~g~~mv 84 (100)
T PF05172_consen 70 ALQKNG---TIFSGSLMV 84 (100)
T ss_dssp HHTTTT---EEETTCEEE
T ss_pred HHHhCC---eEEcCcEEE
Confidence 998765 466665443
No 83
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=76.43 E-value=5.5 Score=46.57 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=53.9
Q ss_pred eEEEEeCCCccccHHHHHHHHH---hccc-cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLE---NEVG-GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE---~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
-.|++-|.|-+.++.|+.+||- -..| .+-.+=++- ..+++.+-|||.|+.+|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-----------------------pdgrpTGdAFvlfa~ee~ 218 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-----------------------PDGRPTGDAFVLFACEED 218 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-----------------------CCCCcccceEEEecCHHH
Confidence 4578999999999999999994 3333 333333332 137899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeee
Q 048783 87 ITRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|..|+..-.+ .+|.+|+.+-
T Consensus 219 aq~aL~khrq---~iGqRYIElF 238 (508)
T KOG1365|consen 219 AQFALRKHRQ---NIGQRYIELF 238 (508)
T ss_pred HHHHHHHHHH---HHhHHHHHHH
Confidence 9999987543 5666666543
No 84
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=73.97 E-value=4.3 Score=50.72 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=59.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.|-|-|-|+|--++-+||.+-|.. .|.+.-|||... -.+...|+||||.|.++.-|..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK---------------------~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKK---------------------IGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhc-ccceeeeccchh---------------------hcchhhccceeeeccCcHHHHH
Confidence 467889999999999999999988 899999999764 2356679999999999999999
Q ss_pred HHHhhcccceeccCe
Q 048783 90 AMDAAEHMELFLNGR 104 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~ 104 (1117)
|+++-+..+ +||.+
T Consensus 671 A~~al~STH-lyGRr 684 (725)
T KOG0110|consen 671 AFDALGSTH-LYGRR 684 (725)
T ss_pred HHHhhcccc-eechh
Confidence 998766433 44443
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=73.54 E-value=2.3 Score=46.46 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=63.0
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
......+||.|+||-..|+.+=|.+.|-+ .|.|+++-|-.. +.. -.+||+|.|.+.
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~ip~~----------------------~d~-~~kFa~v~f~~E 59 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGIPSG----------------------QDQ-EQKFAYVFFPNE 59 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeCCCC----------------------ccC-CCceeeeecccc
Confidence 34456789999999999998877777665 899998877653 112 234999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
-+...|+.+.. ..-+-+..+++.+-..+
T Consensus 60 ~sv~~a~~L~n--g~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 60 NSVQLAGQLEN--GDDLEEDEEQRTLRCGN 87 (267)
T ss_pred cchhhhhhhcc--cchhccchhhcccccCC
Confidence 99999999975 35566677777644443
No 86
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=72.91 E-value=1 Score=47.88 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=71.5
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
.-|+|||+|-.+|..||.--|-+ .|.+--+-|--+ .++++|.+|||.-.++..|-.+|
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRD---------------------k~TGKSKGFaFLcYEDQRSTILA 93 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRD---------------------KKTGKSKGFAFLCYEDQRSTILA 93 (219)
T ss_pred eEEEECCCcccccCCcEEEEeec-cCceEEEEEEec---------------------CCCCcccceEEEEecCccceEEE
Confidence 46999999999999998877655 676555555544 45799999999999999999988
Q ss_pred HHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEe
Q 048783 91 MDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIG 138 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 138 (1117)
.+--. ..-++|+.|+|- .-..+ +.+.....+++++.+++
T Consensus 94 VDN~N--Giki~gRtirVD--Hv~~Y-----k~pk~~E~~d~~t~~L~ 132 (219)
T KOG0126|consen 94 VDNLN--GIKILGRTIRVD--HVSNY-----KKPKESEEMDAVTKELQ 132 (219)
T ss_pred EeccC--CceecceeEEee--ecccc-----cCCchhhhhhHHHHHHh
Confidence 88653 477899999987 22222 22334567777776653
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=71.74 E-value=7.9 Score=45.98 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=60.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-+.||.|-|.|-+.|-+.|+|=|.+ +|.|--..|... +++++ -|.|+++|.|+
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre-~G~v~yadime~------------------------GkskG--VVrF~s~edAE 587 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFRE-IGHVLYADIMEN------------------------GKSKG--VVRFFSPEDAE 587 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHh-ccceehhhhhcc------------------------CCccc--eEEecCHHHHH
Confidence 4568999999999999999999977 899887777542 56666 89999999999
Q ss_pred HHHHhhcccceeccCeeeeee
Q 048783 89 RAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
+|..+... ..+.|+.++|.
T Consensus 588 ra~a~Mng--s~l~Gr~I~V~ 606 (608)
T KOG4212|consen 588 RACALMNG--SRLDGRNIKVT 606 (608)
T ss_pred HHHHHhcc--CcccCceeeee
Confidence 99999853 57889988886
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=68.69 E-value=5.9 Score=48.35 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=63.7
Q ss_pred cccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 4 REKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 4 ~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
+++++-.+++.|.|.|.+|+-++|..-|+. .|.|--+| - .-..++|.||||=+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir--~------------------------t~~~~~~~~v~FyD 121 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIR--E------------------------TPNKRGIVFVEFYD 121 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhh--c------------------------ccccCceEEEEEee
Confidence 567888999999999999999999999998 67664422 1 13578999999999
Q ss_pred hHHHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 84 STYITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
-..|+.|+.+-. +.-+.|+.+| +++...
T Consensus 122 vR~A~~Alk~l~--~~~~~~~~~k-~~~~~~ 149 (549)
T KOG4660|consen 122 VRDAERALKALN--RREIAGKRIK-RPGGAR 149 (549)
T ss_pred hHhHHHHHHHHH--HHHhhhhhhc-CCCccc
Confidence 999999998764 3567778888 534333
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=68.28 E-value=19 Score=42.00 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=60.1
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccE--------EEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEE
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGV--------WRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVH 80 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~ 80 (1117)
+-|.|||+|.|.++|.+|..+++-. ||-+ .+|.|-.. +.++-.+-|-.-
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd----------------------~~G~lKGDaLc~ 189 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRD----------------------NQGKLKGDALCC 189 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEec----------------------CCCCccCceEEE
Confidence 4455999999999999999998855 7743 34444432 347788899999
Q ss_pred ecChHHHHHHHHhhcccceeccCeeeeeec
Q 048783 81 FATSTYITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 81 F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|--.||..+|+.+-.. --|+|+-|+|..
T Consensus 190 y~K~ESVeLA~~ilDe--~~~rg~~~rVer 217 (382)
T KOG1548|consen 190 YIKRESVELAIKILDE--DELRGKKLRVER 217 (382)
T ss_pred eecccHHHHHHHHhCc--ccccCcEEEEeh
Confidence 9999999999998754 466699999984
No 90
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=65.26 E-value=11 Score=42.19 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=58.0
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
...|.+|-....|+.+-|..-|-. ||+|.. +++.+..+.+++.+|+||-|-+++.+..
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~K-------------------fpsf~~---akviRdkRTgKSkgygfVSf~~pad~~r 247 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKK-------------------FPSFQK---AKVIRDKRTGKSKGYGFVSFRDPADYVR 247 (290)
T ss_pred cceeecccccccccHHHHHHHHHh-------------------ccchhh---ccccccccccccccceeeeecCHHHHHH
Confidence 345667777777777666655543 666654 5566667789999999999999999999
Q ss_pred HHHhhcccceeccCeeeeee
Q 048783 90 AMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|+.-+.. =+.|++++|++
T Consensus 248 Amrem~g--kyVgsrpiklR 265 (290)
T KOG0226|consen 248 AMREMNG--KYVGSRPIKLR 265 (290)
T ss_pred HHHhhcc--cccccchhHhh
Confidence 9998753 47899998887
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=62.50 E-value=12 Score=44.26 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=56.7
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
..|+.++|+|.+++.++|+.-+-+.-|.|....- +.+.+.+|-+|+.+.|.|..
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkf--------------------------f~kd~kmal~q~~sveeA~~ 467 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF--------------------------FQKDRKMALPQLESVEEAIQ 467 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeee--------------------------cCCCcceeecccCChhHhhh
Confidence 4589999999999999999999986667765433 35788999999999999999
Q ss_pred HHHhhcccceeccCeeeeee
Q 048783 90 AMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|+-.-- ++..=++.-|+||
T Consensus 468 ali~~h-nh~lgen~hlRvS 486 (492)
T KOG1190|consen 468 ALIDLH-NHYLGENHHLRVS 486 (492)
T ss_pred hccccc-cccCCCCceEEEE
Confidence 987653 2222233477877
No 92
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=62.31 E-value=23 Score=43.14 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=61.6
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCC-CCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTP-SESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
.....+.|-|||+|-+++.++|...|-. +|.+ +.+|.. +++ ....+ -..+.+|+|.=|+..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~-FGs~-----~VdWP~k~~~-----------~~~~p-pkGs~~YvflvFe~E 316 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQ-FGSV-----KVDWPGKANS-----------RGRAP-PKGSYGYVFLVFEDE 316 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhccc-ccce-----EeecCCCccc-----------cccCC-CCCcccEEEEEecch
Confidence 3457788999999999999999999876 7764 445542 111 01111 123447999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.+.+.-+++..+ --++.++||+.+-..+
T Consensus 317 ~sV~~Ll~aC~~---~~~~~yf~vss~~~k~ 344 (520)
T KOG0129|consen 317 RSVQSLLSACSE---GEGNYYFKVSSPTIKD 344 (520)
T ss_pred HHHHHHHHHHhh---cccceEEEEecCcccc
Confidence 998888888643 5677889999444333
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=62.23 E-value=8 Score=42.49 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=51.1
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
.....-.|+.|.|....++.++|+..|-.+-| -++++|.. .+..+.|||.|...
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~g-f~~l~~~~-------------------------~~g~~vaf~~~~~~ 258 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPG-FHILKIRA-------------------------RGGMPVAFADFEEI 258 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCC-ceEEEEec-------------------------CCCcceEeecHHHH
Confidence 34445567889999999999999999999887 34455544 35679999999999
Q ss_pred HHHHHHHHhh
Q 048783 85 TYITRAMDAA 94 (1117)
Q Consensus 85 e~a~~a~~~a 94 (1117)
|.|+.||.--
T Consensus 259 ~~at~am~~l 268 (284)
T KOG1457|consen 259 EQATDAMNHL 268 (284)
T ss_pred HHHHHHHHHh
Confidence 9999998854
No 94
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=61.79 E-value=14 Score=39.66 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=58.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
|...+.|+|.+..+..+-|-+- ++..|..- + ||+ |-+-+.+++++++|||-|++.|++.
T Consensus 95 vganlfvgNLd~~vDe~~L~dt-FsafG~l~------~--~P~------------i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDT-FSAFGVLI------S--PPK------------IMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred ccccccccccCcchhHHHHHHH-HHhccccc------c--CCc------------ccccccCCCCCCCeEEechhHHHHH
Confidence 5566779999997777766664 45577421 1 333 2333556899999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.|+.++.. =++++++..|+-..
T Consensus 154 ~ai~s~ng--q~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 154 AAIGSMNG--QYLCNRPITVSYAF 175 (203)
T ss_pred HHHHHhcc--chhcCCceEEEEEE
Confidence 99999853 47788888887433
No 95
>smart00663 RPOLA_N RNA polymerase I subunit A N-terminus.
Probab=58.98 E-value=11 Score=43.50 Aligned_cols=52 Identities=25% Similarity=0.322 Sum_probs=37.7
Q ss_pred eEEee-eEEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccC--CCCCCCCeEEE
Q 048783 746 QVING-FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYV 809 (1117)
Q Consensus 746 ~vi~G-~VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~Y~V 809 (1117)
.+..| .|++-|.|+||..-|+-.++.-.|. +-=|=+|..|+ +.|+|||+-.+
T Consensus 198 ~l~dgd~Vl~NRqPsLHr~si~a~~v~v~~~------------~tir~n~~~c~~fNADFDGDeMni 252 (295)
T smart00663 198 HVIDGDVVLFNRQPTLHRMSIQAHRVRVLEG------------KTIRLNPLVCSPYNADFDGDEMNL 252 (295)
T ss_pred ehhcCCEEEEecCCccccccceeEEEEEecC------------ceEEecCccCCcccCCcCCCEEEE
Confidence 45677 5999999999999999888876554 12222344443 47999999865
No 96
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=58.60 E-value=29 Score=31.14 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=42.5
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccc--cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVG--GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
..-..|.|.|.+. .+.+|++.|+..+.+ ...+++-- --.-+-|-|.+.+
T Consensus 3 ~rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWI----------------------------dDtScNvvf~d~~ 53 (62)
T PF10309_consen 3 IRPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWI----------------------------DDTSCNVVFKDEE 53 (62)
T ss_pred ceeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEe----------------------------cCCcEEEEECCHH
Confidence 3456789999976 899999999999953 23333322 2245789999999
Q ss_pred HHHHHHHh
Q 048783 86 YITRAMDA 93 (1117)
Q Consensus 86 ~a~~a~~~ 93 (1117)
.|.+|+.+
T Consensus 54 ~A~~AL~~ 61 (62)
T PF10309_consen 54 TAARALVA 61 (62)
T ss_pred HHHHHHHc
Confidence 99999864
No 97
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=57.67 E-value=17 Score=45.53 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=46.1
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
|-|+|-|||-+|+-+|+.+||-.+-=.=-- .+.+.++-++..+-+.|-|++.+.|+.|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~s----------------------I~~r~nd~G~pTGe~mvAfes~~eAr~A 925 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNS----------------------IRIRRNDDGVPTGECMVAFESQEEARRA 925 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCc----------------------eeEeecCCCCcccceeEeecCHHHHHhh
Confidence 579999999999999999999875421111 2223345678899999999999999988
Q ss_pred HH
Q 048783 91 MD 92 (1117)
Q Consensus 91 ~~ 92 (1117)
..
T Consensus 926 ~~ 927 (944)
T KOG4307|consen 926 SM 927 (944)
T ss_pred hh
Confidence 54
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=55.91 E-value=7.7 Score=47.44 Aligned_cols=85 Identities=18% Similarity=0.326 Sum_probs=63.2
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCC-CCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPS-ESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
-..+.+|+|||.+++..+...|+.+.+ ..+.+-+. ++ +++=. ..-.....+||++|.+.+-|
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~---~~~gl~~~--~~g~~~~s------------~~~n~~~nfa~ie~~s~~~a 236 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRM---HASGLNQA--PDGPSFVS------------VQLNLEKNFAFIEFRSISEA 236 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhh---hhcccccC--CCCCceee------------eeecccccceeEEecCCCch
Confidence 456889999999999999999999853 34444444 11 11111 11256889999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
+.++.+-+ .+|.|.++|++.+.+
T Consensus 237 t~~~~~~~---~~f~g~~~~~~r~~d 259 (500)
T KOG0120|consen 237 TEAMALDG---IIFEGRPLKIRRPHD 259 (500)
T ss_pred hhhhcccc---hhhCCCCceeccccc
Confidence 99998865 689999999984333
No 99
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=55.77 E-value=19 Score=42.27 Aligned_cols=83 Identities=11% Similarity=0.191 Sum_probs=58.7
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEE--EEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWR--CRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
....-|++-|.|-.++-+|+.+||-...-.+.- +..-. +.-++..+-|||||.++|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~----------------------N~qGrPSGeAFIqm~nae 335 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL----------------------NGQGRPSGEAFIQMRNAE 335 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE----------------------cCCCCcChhhhhhhhhhH
Confidence 346678999999999999999999885532211 22222 223677889999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
+|..|+....+ + +-.++|+.|-+.+..
T Consensus 336 ~a~aaaqk~hk-~-~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 336 RARAAAQKCHK-K-LMKSRYIEVFPCSVE 362 (508)
T ss_pred HHHHHHHHHHH-h-hcccceEEEeeccHH
Confidence 99888776643 2 226888888755544
No 100
>PF00623 RNA_pol_Rpb1_2: RNA polymerase Rpb1, domain 2; InterPro: IPR000722 RNA polymerases catalyse the DNA dependent polymerisation of RNA from DNA, using the four ribonucleoside triphosphates as substrates. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Eukaryotic RNA polymerase I is essentially used to transcribe ribosomal RNA units, polymerase II is used for mRNA precursors, and III is used to transcribe 5S and tRNA genes. Each class of RNA polymerase is assembled from nine to fourteen different polypeptides. Members of the family include the largest subunit from eukaryotes; the gamma subunit from Cyanobacteria; the beta' subunit from bacteria; the A' subunit from archaea; and the B'' subunit from chloroplast RNA polymerases.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_M 2PMZ_Q 3HKZ_I 1ZYR_D 1SMY_D 2A68_N 2O5J_D 3AOH_N 2O5I_D 2CW0_N ....
Probab=53.68 E-value=11 Score=39.85 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=33.2
Q ss_pred EEeee-EEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccC--CCCCCCCeEEEe
Q 048783 747 VINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYVT 810 (1117)
Q Consensus 747 vi~G~-VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~Y~Vi 810 (1117)
+..|+ |++-|.|.||..-|+-+++.-.+. +-=|=+|..|+ +.|+|||+-.|.
T Consensus 95 l~~gd~vl~nRqPtLh~~s~~a~~~~~~~~------------~t~~~~~~~c~~~NADFDGDem~i~ 149 (166)
T PF00623_consen 95 LCDGDIVLLNRQPTLHRMSIMAHKVRVLPG------------KTIRINPLVCSPFNADFDGDEMNIH 149 (166)
T ss_dssp HTTT-EEEEEESS-SSGGGEEEEEEEEESS------------SSEEEEGGGHHHHT--TSS-EEEEE
T ss_pred hhcCceeEEeccchhccceeeeeeeeeecc------------cEEEeeccchhhhhccCCcceEEEE
Confidence 34564 999999999999999998875554 22222444444 689999998764
No 101
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=51.45 E-value=26 Score=41.94 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCccccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCC---CCCCCcccccccccccccCCCCC--ccc
Q 048783 1 PEEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTP---SESYPNFFIENVAEVQKTDDYEK--VEP 75 (1117)
Q Consensus 1 ~~~~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~ 75 (1117)
||-++.|+-.+||-+.|.|.+-+-+.|.+-|-- +|.|-.+||-. | |++ .. ..+++|-- -+-
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIck---Pgaip~d--------~r--~~~~~~~~~~tk~ 287 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICK---PGAIPED--------VR--GFPKKYFELQTKE 287 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecC---CCCCCcc--------cc--cCCccchhhhhhh
Confidence 566778899999999999999999888887754 89999999865 5 443 11 11222332 368
Q ss_pred eEEEEecChHHHHHHHHhhcccceeccCeeee
Q 048783 76 HAFVHFATSTYITRAMDAAEHMELFLNGRALK 107 (1117)
Q Consensus 76 ~afV~F~~~e~a~~a~~~a~~~~l~~~~~~Lk 107 (1117)
||+|.|...++|..|..+.+.-.-|-.|-..|
T Consensus 288 ~AlvEye~~~~A~KA~e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 288 CALVEYEEVEAARKARELLNPEQNWRMGLKVK 319 (484)
T ss_pred hhhhhhhhhHHHHHHHHhhchhhhhhhcchhh
Confidence 99999999999999999875322344444333
No 102
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=47.04 E-value=14 Score=42.46 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=61.6
Q ss_pred eeEEE-EeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 10 DTQVS-VGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~-v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
..++. |+|++-.++-++|++++-. +|.+.+.|+-+. +......++|+|.|.....+.
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~---------------------~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTD---------------------EESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred cccceeecccccccchHHHhhhccC-cCcceeeccCCC---------------------CCccchhhhhhhhhhhchhHH
Confidence 34566 9999999999999955444 789999999887 556789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
.++.. +. --+++.++.+..+
T Consensus 242 ~~~~~-~~--~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 242 LALND-QT--RSIGGRPLRLEED 261 (285)
T ss_pred HHhhc-cc--CcccCcccccccC
Confidence 99987 32 3567778877633
No 103
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=40.58 E-value=27 Score=42.98 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=24.5
Q ss_pred CCCccceEEEEecChHHHHHHHHhhc-ccceecc
Q 048783 70 YEKVEPHAFVHFATSTYITRAMDAAE-HMELFLN 102 (1117)
Q Consensus 70 ~~~~~~~afV~F~~~e~a~~a~~~a~-~~~l~~~ 102 (1117)
+..-.+||||+|++++++..+-.+-. +....|+
T Consensus 427 nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~Fn 460 (549)
T KOG4660|consen 427 NKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFN 460 (549)
T ss_pred cccccceeEEeecCHHHHHHHHHHHcCCchhhhc
Confidence 45667999999999999998887753 2224455
No 104
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=39.29 E-value=46 Score=38.16 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHhcc-------ccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHHhh
Q 048783 22 IKAVDLVKYLENEV-------GGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAA 94 (1117)
Q Consensus 22 ~~a~~l~~~lE~~~-------G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~~a 94 (1117)
|.+.++.+=||.++ |.|.+|-|... |+| +....+ --||||+..++|..|+--.
T Consensus 290 Vg~gevd~elede~keEceKyg~V~~viifei-------p~~-----------p~deav--RiFveF~r~e~aiKA~Vdl 349 (378)
T KOG1996|consen 290 VGAGEVDEELEDETKEECEKYGKVGNVIIFEI-------PSQ-----------PEDEAV--RIFVEFERVESAIKAVVDL 349 (378)
T ss_pred cCcccccHHHHHHHHHHHHhhcceeeEEEEec-------CCC-----------ccchhh--eeeeeeccHHHHHHHHHhc
Confidence 45666666666554 47999988875 222 212333 3699999999999997654
Q ss_pred cccceeccCeeeeee
Q 048783 95 EHMELFLNGRALKVS 109 (1117)
Q Consensus 95 ~~~~l~~~~~~Lkv~ 109 (1117)
. .-+|||+.+++-
T Consensus 350 n--GRyFGGr~v~A~ 362 (378)
T KOG1996|consen 350 N--GRYFGGRVVSAC 362 (378)
T ss_pred C--Cceecceeeehe
Confidence 2 359999988865
No 105
>PRK02625 rpoC1 DNA-directed RNA polymerase subunit gamma; Provisional
Probab=37.05 E-value=41 Score=42.35 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=36.3
Q ss_pred eEEee-eEEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccC--CCCCCCCeEEE
Q 048783 746 QVING-FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYV 809 (1117)
Q Consensus 746 ~vi~G-~VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~Y~V 809 (1117)
.++.| .|+.-|.|.||.--||-++++-.+.- -=|=||..|+ ..|+|||+-.|
T Consensus 422 ~v~~gd~VLlNRqPTLHR~sIqAf~~~l~~~k------------tirlhplvC~~fNADFDGDeMnv 476 (627)
T PRK02625 422 EVIEGHPVLLNRAPTLHRLGIQAFEPILVEGR------------AIQLHPLVCPAFNADFDGDQMAV 476 (627)
T ss_pred EeecCcEEEecCCCccccccceeEeeEEcCCC------------eEEeccccCCcccCCcCCCeEEE
Confidence 45667 59999999999999998887654431 1122333443 47999999754
No 106
>CHL00018 rpoC1 RNA polymerase beta' subunit
Probab=34.47 E-value=37 Score=43.15 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=36.1
Q ss_pred eEEee-eEEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccC--CCCCCCCeEEE
Q 048783 746 QVING-FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYV 809 (1117)
Q Consensus 746 ~vi~G-~VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~Y~V 809 (1117)
.++.| .|++-|.|.||.--||=+++|=.+. +-=|=||..|+ ..|+|||+-.|
T Consensus 443 ~v~~gd~VLlNRqPTLHR~sIqAf~~~L~~g------------ktIrLhplvC~~fNADFDGDqMnv 497 (663)
T CHL00018 443 EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG------------RAICLHPLVCKGFNADFDGDQMAV 497 (663)
T ss_pred ehhcCceeeecCCCcccccccceeeEEecCC------------CeEEeCcccCCcccCCccCcEEEE
Confidence 35667 5899999999999999888765443 11122333444 47999999864
No 107
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=34.45 E-value=1.1e+02 Score=37.80 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=65.9
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..+.+.+-|+|+.+++-|.|||..|-. .|.|--..+-|. -+.-..|.|+||...+++.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTN---------------------aRsPGaRCYGfVTMSts~e 459 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTN---------------------ARSPGARCYGFVTMSTSAE 459 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHH-hcceeceeeeec---------------------CCCCCcceeEEEEecchHH
Confidence 347788999999999999999998866 788777777775 2234678999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
|+..+.---+ --|+|+.+.|- ..+|-
T Consensus 460 AtkCI~hLHr--TELHGrmISVE-kaKNE 485 (940)
T KOG4661|consen 460 ATKCIEHLHR--TELHGRMISVE-KAKNE 485 (940)
T ss_pred HHHHHHHhhh--hhhcceeeeee-ecccC
Confidence 9888775432 35789999888 45553
No 108
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=32.83 E-value=99 Score=29.56 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=43.8
Q ss_pred cchhHHHHHHHHhcCCeeEcCeEEEEEEecccccccceEEEEecCCCCCHHHHHHHhc
Q 048783 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMG 505 (1117)
Q Consensus 448 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~~s~wFfa~~~~~t~~~Ir~wmG 505 (1117)
..+.+.++|+.++.+|+.+++-+.+.+||+-.-|+ +.+.-++...+.+++-+-+-
T Consensus 18 Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~---i~~vv~D~~~~td~lee~i~ 72 (88)
T cd00292 18 DLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQ---IYCVVEDDEGGTDELEEAIS 72 (88)
T ss_pred CHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEE---EEEEEEeCCcCcHHHHHHHh
Confidence 45789999999999999999999999999955554 66666766666677765544
No 109
>TIGR02387 rpoC1_cyan DNA-directed RNA polymerase, gamma subunit. The RNA polymerase gamma subunit, encoded by the rpoC1 gene, is found in cyanobacteria and corresponds to the N-terminal region the beta' subunit, encoded by rpoC, in other bacteria. The equivalent subunit in plastids and chloroplasts is designated beta', while the product of the rpoC2 gene is designated beta''.
Probab=32.28 E-value=36 Score=42.76 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=35.4
Q ss_pred EEee-eEEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccC--CCCCCCCeEEE
Q 048783 747 VING-FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYV 809 (1117)
Q Consensus 747 vi~G-~VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~Y~V 809 (1117)
++.| .|+.-|.|.||.--||-++++-.+. +-=|=||..|+ ..|+|||+-.|
T Consensus 416 v~~gd~VLlNRqPTLHR~sIqAf~~~l~~~------------ktirlhplvC~~fNADFDGDeMnv 469 (619)
T TIGR02387 416 VITGHPVMLNRAPTLHRLGIQAFEPILVDG------------RAIQLHPLVCPAFNADFDGDQMAV 469 (619)
T ss_pred HhcCCEEEecCCCccchhcceeeeeEEecC------------CeEEECcccCCcccCCCCCceeee
Confidence 5566 5999999999999999888764432 11233444444 37999999753
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=31.83 E-value=66 Score=40.73 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=55.1
Q ss_pred eEEEEeCCCccccHHHHHHHHHhcc---ccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEV---GGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~---G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
-.|++-|.|-++.|.|+..||-... |.|+.+ +.-.+-|||-|.|-|.|
T Consensus 3 VIIRLqnLP~tAga~DIR~FFSGL~IPdGgVHII-----------------------------GGe~GeaFI~FsTDeDA 53 (944)
T KOG4307|consen 3 VIIRLQNLPMTAGASDIRTFFSGLKIPDGGVHII-----------------------------GGEEGEAFIGFSTDEDA 53 (944)
T ss_pred eEEEecCCcccccchHHHHhhcccccCCCceEEe-----------------------------cccccceEEEecccchh
Confidence 3689999999999999999997754 344432 46778999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
++||..-+ +-+.|.-+++-++++.
T Consensus 54 RlaM~kdr---~~i~g~~VrLlLSSks 77 (944)
T KOG4307|consen 54 RLAMTKDR---LMIHGAEVRLLLSSKS 77 (944)
T ss_pred hhhhhhcc---cceecceEEEEeccHH
Confidence 99998763 5666665555544444
No 111
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=31.55 E-value=38 Score=37.45 Aligned_cols=55 Identities=16% Similarity=0.330 Sum_probs=44.4
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
..|+||+||..+..++|-.||-. -|.+..+.+|. +|+||+|.++..|.-|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~mk~-----------------------------gf~fv~fed~rda~Da 51 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKG-YGKIPDADMKN-----------------------------GFGFVEFEDPRDADDA 51 (216)
T ss_pred CceeecccCCccchhHHHHHHhh-ccccccceeec-----------------------------ccceeccCchhhhhcc
Confidence 35899999999999999999987 56666666654 5679999988888888
Q ss_pred HHhhc
Q 048783 91 MDAAE 95 (1117)
Q Consensus 91 ~~~a~ 95 (1117)
+.--.
T Consensus 52 v~~l~ 56 (216)
T KOG0106|consen 52 VHDLD 56 (216)
T ss_pred cchhc
Confidence 77654
No 112
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=28.46 E-value=45 Score=36.92 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=51.4
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
--..+.|-++...++..+|++.|+. .|.+. . +.-.+..|||+|++.++|+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~------~-----------------------~~~~~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRP-AGEVT------Y-----------------------VDARRNFAFVEFSEQEDAK 147 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcc-cCCCc------h-----------------------hhhhccccceeehhhhhhh
Confidence 3445668888888888999999988 45431 0 1125689999999999999
Q ss_pred HHHHhhcccceeccCeeeeee
Q 048783 89 RAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
.|+++-. ..-+.++.|.+.
T Consensus 148 ra~~~l~--~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 148 RALEKLD--GKKLNGRRISVE 166 (216)
T ss_pred hcchhcc--chhhcCceeeec
Confidence 9999874 356777777774
No 113
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.10 E-value=1.5e+02 Score=35.04 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=44.3
Q ss_pred EEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHH
Q 048783 13 VSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMD 92 (1117)
Q Consensus 13 v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~ 92 (1117)
+-|--.-..++.+||---|-+ .|.+--|++--+ .+++.|-.||||+|.+.|+.+.|-=
T Consensus 242 LFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD---------------------~ktgdsLqyaFiEFen~escE~AyF 299 (479)
T KOG0415|consen 242 LFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRD---------------------RKTGDSLQYAFIEFENKESCEQAYF 299 (479)
T ss_pred EEEEecCCcccccchhhHHhh-cccceeeeEEec---------------------ccccchhheeeeeecchhhHHHHHh
Confidence 344445555555666555544 888888888776 5567888999999999999998876
Q ss_pred hhc
Q 048783 93 AAE 95 (1117)
Q Consensus 93 ~a~ 95 (1117)
.+.
T Consensus 300 KMd 302 (479)
T KOG0415|consen 300 KMD 302 (479)
T ss_pred hhc
Confidence 654
No 114
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=25.69 E-value=96 Score=36.54 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=62.6
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-+-||.|-|.|..+++.++.+||-+ ||.+-+=+ .|. .|+.. |-.-..+.++.+-|.|.|+++.+|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK-~t~--kPki~----------~y~dkeT~~~KGeatvS~~D~~~a 129 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNK-RTG--KPKIK----------IYTDKETGAPKGEATVSYEDPPAA 129 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhh-cceeccCC-CCC--Ccchh----------ccccccccCcCCceeeeecChhhh
Confidence 35678999999999999999999987 65432211 111 33331 111123567778899999999999
Q ss_pred HHHHHh-hcccceeccCeeeeeecCCCCC
Q 048783 88 TRAMDA-AEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~-a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
+.|+.- |++ -|.+..+||+++...+
T Consensus 130 kaai~~~agk---df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 130 KAAIEWFAGK---DFCGNTIKVSLAERRT 155 (351)
T ss_pred hhhhhhhccc---cccCCCchhhhhhhcc
Confidence 999884 432 4666899999665554
No 115
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=24.55 E-value=2e+02 Score=27.65 Aligned_cols=58 Identities=9% Similarity=0.097 Sum_probs=46.5
Q ss_pred cchhHHHHHHHHhcCCeeEcCeEEEEEEecccccccceEEEEecCCCCCHHHHHHHhcCCC
Q 048783 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508 (1117)
Q Consensus 448 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~~s~wFfa~~~~~t~~~Ir~wmG~F~ 508 (1117)
..+++.++++.++.+|..+++-..+.+||+-..|+ +.+.-++.....+.|-+-+..+.
T Consensus 18 Dle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~---~~~vv~D~~g~td~lee~i~~ve 75 (88)
T TIGR00489 18 DLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAIN---VMVVMGDAEGGTEAAEESLSGIE 75 (88)
T ss_pred CHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeE---EEEEEecCCcChHHHHHHHhcCC
Confidence 45889999999999999999999999999955554 77777766566677777666654
No 116
>PRK08566 DNA-directed RNA polymerase subunit A'; Validated
Probab=23.11 E-value=77 Score=42.02 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=38.5
Q ss_pred eeEEeee-EEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccC--CCCCCCCeEEEe
Q 048783 745 LQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYVT 810 (1117)
Q Consensus 745 ~~vi~G~-VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~Y~Vi 810 (1117)
..++.|+ |++-|.|+||.--|+=.++.-.|. + -=|=+|..|+ ..|+|||+-.+-
T Consensus 410 Rhl~dgd~vl~NRqPsLHr~si~a~~~~v~~~-~-----------t~r~n~~~c~~~NADFDGDeMn~h 466 (882)
T PRK08566 410 RHLIDGDIVLFNRQPSLHRMSIMAHRVRVLPG-K-----------TFRLNLAVCPPYNADFDGDEMNLH 466 (882)
T ss_pred hhhhcCceeeecCCCcccccccceeEEEEecC-c-----------eEeeccccCCCccCCccCcEEEEe
Confidence 3466774 899999999999999888876654 2 1133344444 489999998653
No 117
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=22.65 E-value=58 Score=36.74 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=39.1
Q ss_pred CCCccceEEEEecChHHHHHHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 70 YEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 70 ~~~~~~~afV~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
-.+.++.+-|+|...|+|..|+..-+ .-||+|+++-+-+.|.+++
T Consensus 106 ~~hl~GNVYV~f~~Ee~ae~a~~~ln--nRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 106 GDHLVGNVYVKFRSEEDAEAALEDLN--NRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred chhhhhhhhhhcccHHHHHHHHHHHc--CccccCCcceeeecCcCch
Confidence 35788999999999999999998864 3799999999998888875
No 118
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=22.05 E-value=2.2e+02 Score=27.34 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHhcCCeeEcCeEEEEEEecccccccceEEEEecCCCCCHHHHHHHhcCCC
Q 048783 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508 (1117)
Q Consensus 448 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~~s~wFfa~~~~~t~~~Ir~wmG~F~ 508 (1117)
..+++.+.|+.++..|+.+++-..+.+||+-..|+ +.+.-++.....+.+-+-+-.+.
T Consensus 18 Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~---i~~vv~D~~~~td~lee~i~~~e 75 (88)
T PRK00435 18 DLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALK---LYVIMPDEEGGTEPVEEAFANVE 75 (88)
T ss_pred CHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEE---EEEEEEcCCcCcHHHHHHHhccC
Confidence 45789999999999999999999999999955554 77777776666677776666554
No 119
>PRK00566 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=21.37 E-value=94 Score=42.16 Aligned_cols=52 Identities=27% Similarity=0.330 Sum_probs=36.5
Q ss_pred EEee-eEEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccC--CCCCCCCeEEEe
Q 048783 747 VING-FVVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYVT 810 (1117)
Q Consensus 747 vi~G-~VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~Y~Vi 810 (1117)
++.| .|+.-|.|.||.--||=++++=.|. +-=|=||..|+ ..|+|||+-.|-
T Consensus 405 vi~gd~VLlNRqPTLHR~sIqAf~~~l~~g------------ktirLhplvC~~fNADFDGDqMnvH 459 (1156)
T PRK00566 405 VIKEHPVLLNRAPTLHRLGIQAFEPVLIEG------------KAIQLHPLVCTAFNADFDGDQMAVH 459 (1156)
T ss_pred ecCCCEEEecCCCcccccccceeEEEEecC------------ceEEECccccCccccccccceeEEe
Confidence 5567 5999999999999999888776553 11122333333 479999998754
No 120
>TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A'. This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein.
Probab=20.95 E-value=88 Score=41.40 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=38.2
Q ss_pred eeEEeee-EEEEeCCCCCCCCceEEEEecCCCCcccCCeEEeCCCCCCCCCcccC--CCCCCCCeEEEe
Q 048783 745 LQVINGF-VVIAKNPCLRPGDVRILEAVDRPELHHLCDCLVFPQKGDRPHTNEAS--GSDLDGDLYYVT 810 (1117)
Q Consensus 745 ~~vi~G~-VlVtRnPclHPGDIrvv~AVd~PeL~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~Y~Vi 810 (1117)
..++.|+ |++-|.|+||.--|+=.++.-.|. +-=|=+|+.|+ ..|+|||+-.+-
T Consensus 406 rhl~dgd~vl~NRqPsLHr~si~a~~~~v~~~------------~t~r~n~~~c~~~NADFDGDeMn~h 462 (868)
T TIGR02390 406 RHLIDGDIVLFNRQPSLHRMSMMGHKVKVLPG------------KTFRLNLAVCPPYNADFDGDEMNLH 462 (868)
T ss_pred EehhcCccceeccCCccccccceeEEEEEecC------------ceEeeccccCCccccCcccceeeEe
Confidence 3466774 899999999999999888766553 11233344444 479999998754
No 121
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=20.11 E-value=3.3e+02 Score=30.44 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=46.4
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
..+..+.|+|..++++.|...+|+.-|-- .+|+-- .....|||+|.+...|..
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~k-eir~i~--------------------------~~~~iAfve~~~d~~a~~ 198 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFK-EIRLIP--------------------------PRSGIAFVEFLSDRQASA 198 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccc-eeEecc--------------------------CCCceeEEecchhhhhHH
Confidence 35677999999999999999999988731 122221 255789999999999888
Q ss_pred HHHhhcc
Q 048783 90 AMDAAEH 96 (1117)
Q Consensus 90 a~~~a~~ 96 (1117)
|..+.+.
T Consensus 199 a~~~lq~ 205 (221)
T KOG4206|consen 199 AQQALQG 205 (221)
T ss_pred Hhhhhcc
Confidence 8888764
Done!