Query 048783
Match_columns 1117
No_of_seqs 296 out of 491
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j7n_A RNA-dependent RNA polym 100.0 1E-109 3E-114 1030.8 28.3 489 408-926 151-792 (1022)
2 4fxv_A ELAV-like protein 1; RN 98.8 1.2E-08 4.1E-13 95.3 10.2 77 10-110 19-95 (99)
3 2lxi_A RNA-binding protein 10; 98.8 5.1E-09 1.7E-13 96.2 6.9 78 10-110 1-79 (91)
4 3md1_A Nuclear and cytoplasmic 98.8 2.8E-08 9.7E-13 88.3 10.8 78 10-111 1-78 (83)
5 4f25_A Polyadenylate-binding p 98.8 2.4E-08 8.3E-13 95.3 10.1 78 10-113 5-82 (115)
6 3bs9_A Nucleolysin TIA-1 isofo 98.8 3.2E-08 1.1E-12 88.8 10.1 78 10-111 6-83 (87)
7 1whw_A Hypothetical protein ri 98.7 6.4E-08 2.2E-12 89.2 12.1 86 6-115 4-89 (99)
8 3s7r_A Heterogeneous nuclear r 98.7 4.1E-08 1.4E-12 88.4 9.9 81 5-110 6-86 (87)
9 1uaw_A Mouse-musashi-1; RNP-ty 98.7 1.4E-08 4.7E-13 89.1 6.0 75 11-110 1-75 (77)
10 3ucg_A Polyadenylate-binding p 98.7 5.8E-08 2E-12 87.4 10.3 79 8-111 4-82 (89)
11 1s79_A Lupus LA protein; RRM, 98.7 3E-08 1E-12 93.5 8.7 79 6-110 7-85 (103)
12 2x1f_A MRNA 3'-END-processing 98.7 5.4E-08 1.8E-12 89.4 10.2 82 10-115 2-83 (96)
13 2cqc_A Arginine/serine-rich sp 98.7 7.5E-08 2.6E-12 87.8 10.7 80 7-110 12-91 (95)
14 2dnz_A Probable RNA-binding pr 98.7 6.9E-08 2.4E-12 88.1 10.5 81 10-114 5-85 (95)
15 2cqd_A RNA-binding region cont 98.7 1.1E-07 3.7E-12 90.4 11.9 86 4-114 11-96 (116)
16 3mdf_A Peptidyl-prolyl CIS-tra 98.7 5.5E-08 1.9E-12 86.8 9.0 80 7-110 4-83 (85)
17 2dgs_A DAZ-associated protein 98.7 1.3E-07 4.3E-12 87.3 11.3 82 7-113 7-88 (99)
18 2jwn_A Embryonic polyadenylate 98.7 7.8E-08 2.7E-12 92.3 10.2 82 9-115 35-116 (124)
19 2lkz_A RNA-binding protein 5; 98.7 2.8E-08 9.6E-13 92.6 6.8 85 5-111 4-92 (95)
20 1x4h_A RNA-binding protein 28; 98.7 1.1E-07 3.6E-12 89.4 10.9 83 8-112 13-99 (111)
21 2dnm_A SRP46 splicing factor; 98.6 8.3E-08 2.8E-12 89.2 9.8 82 9-114 12-93 (103)
22 2dh8_A DAZ-associated protein 98.6 7.8E-08 2.7E-12 89.7 9.5 80 7-111 13-92 (105)
23 2e5h_A Zinc finger CCHC-type a 98.6 7.9E-08 2.7E-12 87.6 9.2 79 8-110 14-92 (94)
24 2dng_A Eukaryotic translation 98.6 1.3E-07 4.5E-12 88.0 10.6 81 8-114 13-93 (103)
25 1x5u_A Splicing factor 3B subu 98.6 9.8E-08 3.3E-12 88.9 9.7 83 8-114 13-95 (105)
26 2dgv_A HnRNP M, heterogeneous 98.6 1.2E-07 4.2E-12 86.0 10.1 81 6-112 4-84 (92)
27 3s8s_A Histone-lysine N-methyl 98.6 1.3E-07 4.5E-12 90.1 10.7 82 9-114 5-86 (110)
28 1p27_B RNA-binding protein 8A; 98.6 1.4E-07 4.7E-12 88.0 10.6 80 8-111 21-100 (106)
29 3p5t_L Cleavage and polyadenyl 98.6 3.6E-08 1.2E-12 89.8 6.4 79 11-113 2-82 (90)
30 2dgo_A Cytotoxic granule-assoc 98.6 1.5E-07 5.2E-12 89.1 10.9 84 8-115 13-96 (115)
31 2cq0_A Eukaryotic translation 98.6 9.5E-08 3.2E-12 88.8 9.3 84 8-115 13-96 (103)
32 2mss_A Protein (musashi1); RNA 98.6 3.6E-08 1.2E-12 86.2 6.0 73 12-109 1-73 (75)
33 2jrs_A RNA-binding protein 39; 98.6 1.1E-07 3.8E-12 90.0 9.6 80 8-111 24-103 (108)
34 2ywk_A Putative RNA-binding pr 98.6 1.5E-07 5.1E-12 85.9 10.1 80 7-111 13-92 (95)
35 2rs2_A Musashi-1, RNA-binding 98.6 1.3E-07 4.4E-12 89.5 10.0 79 9-112 24-102 (109)
36 2dhg_A TRNA selenocysteine ass 98.6 1E-07 3.5E-12 88.6 9.1 84 8-114 7-90 (104)
37 2do4_A Squamous cell carcinoma 98.6 1.7E-07 5.9E-12 86.5 10.6 80 7-111 14-93 (100)
38 1oo0_B CG8781-PA, drosophila Y 98.6 1.5E-07 5.3E-12 88.4 10.4 81 7-111 23-103 (110)
39 2cpf_A RNA binding motif prote 98.6 1.2E-07 4.3E-12 87.1 9.6 84 10-114 5-88 (98)
40 1x5t_A Splicing factor 3B subu 98.6 7.5E-08 2.6E-12 88.1 7.9 82 10-115 5-87 (96)
41 1iqt_A AUF1, heterogeneous nuc 98.6 3.2E-08 1.1E-12 86.5 5.2 74 12-110 1-74 (75)
42 2cq4_A RNA binding motif prote 98.6 1E-07 3.5E-12 90.3 9.0 79 8-111 23-101 (114)
43 1u6f_A Tcubp1, RNA-binding pro 98.6 1.6E-07 5.3E-12 92.0 10.6 85 6-114 38-122 (139)
44 4a8x_A RNA-binding protein wit 98.6 8.4E-08 2.9E-12 86.1 8.0 77 10-110 4-81 (88)
45 2cpe_A RNA-binding protein EWS 98.6 1E-07 3.4E-12 90.1 8.8 85 6-114 11-103 (113)
46 1x4e_A RNA binding motif, sing 98.6 6.1E-08 2.1E-12 86.8 7.0 76 10-109 5-80 (85)
47 2dgp_A Bruno-like 4, RNA bindi 98.6 1.8E-07 6.2E-12 87.2 10.4 88 4-114 7-96 (106)
48 2cq3_A RNA-binding protein 9; 98.6 2.8E-07 9.7E-12 85.6 11.5 85 5-115 10-94 (103)
49 2la6_A RNA-binding protein FUS 98.6 1E-07 3.6E-12 88.0 8.5 80 7-110 10-97 (99)
50 2d9p_A Polyadenylate-binding p 98.6 1.8E-07 6.1E-12 86.9 10.1 84 5-114 10-93 (103)
51 1x4a_A Splicing factor, argini 98.6 2.5E-07 8.6E-12 86.9 11.2 78 8-112 20-97 (109)
52 2cpz_A CUG triplet repeat RNA- 98.6 1.5E-07 5.2E-12 89.2 9.7 82 9-114 24-105 (115)
53 1x5s_A Cold-inducible RNA-bind 98.6 1.2E-07 4E-12 87.9 8.7 85 6-114 8-92 (102)
54 1x4b_A Heterogeneous nuclear r 98.6 1E-07 3.4E-12 90.6 8.4 79 9-112 26-104 (116)
55 2cqi_A Nucleolysin TIAR; RNA r 98.6 3.5E-07 1.2E-11 84.9 11.9 81 7-113 12-92 (103)
56 2cqg_A TDP-43, TAR DNA-binding 98.6 3.2E-07 1.1E-11 85.2 11.5 81 8-114 13-93 (103)
57 2cqb_A Peptidyl-prolyl CIS-tra 98.6 1.5E-07 5E-12 87.2 9.0 84 7-114 9-92 (102)
58 2khc_A Testis-specific RNP-typ 98.6 1.9E-07 6.4E-12 88.9 9.9 79 8-110 38-116 (118)
59 3ns6_A Eukaryotic translation 98.6 1E-07 3.4E-12 88.8 7.8 80 8-111 4-90 (100)
60 1p1t_A Cleavage stimulation fa 98.6 9.5E-08 3.3E-12 88.7 7.7 82 8-113 6-87 (104)
61 2dnh_A Bruno-like 5, RNA bindi 98.6 3.5E-07 1.2E-11 85.1 11.5 84 8-115 13-98 (105)
62 2fy1_A RNA-binding motif prote 98.6 2.4E-07 8.4E-12 88.7 10.6 81 9-114 6-86 (116)
63 1l3k_A Heterogeneous nuclear r 98.6 3.2E-07 1.1E-11 93.5 12.1 104 7-141 10-113 (196)
64 1wi8_A EIF-4B, eukaryotic tran 98.6 2.6E-07 8.8E-12 86.1 10.3 81 8-114 13-94 (104)
65 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.5 2.6E-07 9.1E-12 90.0 10.7 80 7-110 60-139 (140)
66 2xs2_A Deleted in azoospermia- 98.5 1.4E-07 4.6E-12 87.6 8.0 78 6-110 5-82 (102)
67 2cph_A RNA binding motif prote 98.5 3E-07 1E-11 85.7 10.3 88 6-115 11-98 (107)
68 2ki2_A SS-DNA binding protein 98.5 5.9E-08 2E-12 87.9 5.2 80 11-115 2-81 (90)
69 2dis_A Unnamed protein product 98.5 2.7E-07 9.1E-12 86.5 9.8 84 8-113 6-91 (109)
70 2cq1_A PTB-like protein L; RRM 98.5 3.2E-07 1.1E-11 86.4 10.3 82 6-115 11-92 (101)
71 3ex7_B RNA-binding protein 8A; 98.5 2.7E-07 9.3E-12 88.8 10.0 82 7-112 19-100 (126)
72 2kn4_A Immunoglobulin G-bindin 98.5 3.7E-07 1.3E-11 91.1 11.2 82 8-113 68-149 (158)
73 3ulh_A THO complex subunit 4; 98.5 3.6E-07 1.2E-11 85.3 10.4 79 8-111 27-105 (107)
74 2cpy_A RNA-binding protein 12; 98.5 1.2E-07 4.2E-12 90.2 7.2 80 7-112 12-92 (114)
75 2div_A TRNA selenocysteine ass 98.5 2.4E-07 8.3E-12 85.3 9.1 82 6-111 5-91 (99)
76 2ek1_A RNA-binding protein 12; 98.5 1E-07 3.4E-12 87.0 6.2 80 8-111 13-92 (95)
77 2krb_A Eukaryotic translation 98.5 1.6E-07 5.5E-12 83.7 7.3 73 11-109 2-81 (81)
78 2kt5_A RNA and export factor-b 98.5 4E-07 1.4E-11 87.6 10.7 83 8-115 33-115 (124)
79 1fjc_A Nucleolin RBD2, protein 98.5 2.2E-07 7.5E-12 85.1 8.2 82 1-111 7-88 (96)
80 2j76_E EIF-4B, EIF4B, eukaryot 98.5 1.4E-07 4.9E-12 87.5 7.1 79 7-111 16-95 (100)
81 3n9u_C Cleavage and polyadenyl 98.5 3.5E-07 1.2E-11 92.5 10.3 78 10-111 55-134 (156)
82 2err_A Ataxin-2-binding protei 98.5 2.5E-07 8.6E-12 87.4 8.6 81 6-112 25-105 (109)
83 2nlw_A Eukaryotic translation 98.5 3.4E-07 1.2E-11 85.9 9.4 80 6-111 11-97 (105)
84 2kxn_B Transformer-2 protein h 98.5 3E-07 1E-11 89.9 9.2 78 9-110 45-122 (129)
85 2dgx_A KIAA0430 protein; RRM d 98.5 5.8E-07 2E-11 82.8 10.6 77 9-112 8-88 (96)
86 1sjq_A Polypyrimidine tract-bi 98.5 3.8E-07 1.3E-11 86.8 9.5 79 9-115 15-93 (105)
87 1wg5_A Heterogeneous nuclear r 98.5 3.3E-07 1.1E-11 85.9 9.0 82 8-115 13-95 (104)
88 2lmi_A GRSF-1, G-rich sequence 98.5 9.1E-08 3.1E-12 90.1 5.1 81 6-112 7-90 (107)
89 3r27_A HnRNP L, heterogeneous 98.5 5.2E-07 1.8E-11 85.2 10.0 74 9-110 20-93 (100)
90 2dgw_A Probable RNA-binding pr 98.5 3.4E-07 1.2E-11 83.1 8.4 79 7-112 7-85 (91)
91 2do0_A HnRNP M, heterogeneous 98.5 8E-07 2.7E-11 83.9 11.2 80 8-112 13-92 (114)
92 1h2v_Z 20 kDa nuclear CAP bind 98.5 5.3E-07 1.8E-11 90.2 10.4 80 9-112 38-117 (156)
93 1wez_A HnRNP H', FTP-3, hetero 98.5 2E-07 7E-12 87.4 6.9 78 8-112 13-90 (102)
94 3lqv_A PRE-mRNA branch site pr 98.5 5.1E-07 1.7E-11 85.5 9.6 76 9-111 7-82 (115)
95 3md3_A Nuclear and cytoplasmic 98.4 8.7E-07 3E-11 87.4 11.5 96 11-141 1-96 (166)
96 2cpi_A CCR4-NOT transcription 98.4 4.5E-07 1.5E-11 85.9 8.8 86 6-112 11-99 (111)
97 2cqp_A RNA-binding protein 12; 98.4 2E-07 6.7E-12 85.7 6.1 80 8-111 13-92 (98)
98 4f02_A Polyadenylate-binding p 98.4 6.9E-07 2.3E-11 93.8 11.0 99 9-141 14-112 (213)
99 2dnn_A RNA-binding protein 12; 98.4 4.2E-07 1.4E-11 86.7 8.3 78 10-114 16-93 (109)
100 1fxl_A Paraneoplastic encephal 98.4 8.3E-07 2.9E-11 87.6 10.7 96 10-141 2-97 (167)
101 1wex_A Hypothetical protein (r 98.4 8.9E-07 3E-11 83.7 10.4 80 8-115 13-92 (104)
102 2e5j_A Methenyltetrahydrofolat 98.4 5.4E-07 1.8E-11 83.0 8.6 77 6-111 15-91 (97)
103 1nu4_A U1A RNA binding domain; 98.4 2.9E-07 9.8E-12 84.3 6.7 81 8-115 6-90 (97)
104 2db1_A Heterogeneous nuclear r 98.4 2.4E-07 8.2E-12 89.0 6.4 78 9-112 16-96 (118)
105 2jvr_A Nucleolar protein 3; RN 98.4 4.8E-07 1.7E-11 86.7 8.3 77 9-113 27-104 (111)
106 2dnq_A RNA-binding protein 4B; 98.4 1.5E-06 5.2E-11 78.7 10.7 77 5-113 3-79 (90)
107 2hvz_A Splicing factor, argini 98.4 4.9E-07 1.7E-11 83.6 7.6 76 11-115 1-76 (101)
108 2lea_A Serine/arginine-rich sp 98.4 3.6E-07 1.2E-11 90.0 7.0 82 9-114 46-127 (135)
109 2ytc_A PRE-mRNA-splicing facto 98.4 9.7E-07 3.3E-11 78.8 9.2 76 6-110 8-83 (85)
110 2hgl_A HNRPF protein, heteroge 98.4 3.1E-07 1.1E-11 91.1 6.6 77 10-112 44-123 (136)
111 2hgm_A HNRPF protein, heteroge 98.4 4.5E-07 1.6E-11 88.9 7.3 77 9-111 41-118 (126)
112 1fj7_A Nucleolin RBD1, protein 98.4 2E-07 6.8E-12 86.3 4.6 79 7-111 14-92 (101)
113 1rk8_A CG8781-PA, CG8781-PA pr 98.4 1.1E-06 3.7E-11 89.0 10.4 82 9-114 71-152 (165)
114 1b7f_A Protein (SXL-lethal pro 98.4 8.9E-07 3E-11 87.8 9.5 96 10-141 3-98 (168)
115 2ad9_A Polypyrimidine tract-bi 98.4 7.9E-07 2.7E-11 86.4 8.4 80 8-115 29-108 (119)
116 3md3_A Nuclear and cytoplasmic 98.3 1.8E-06 6.2E-11 85.1 11.1 81 7-111 84-164 (166)
117 2hzc_A Splicing factor U2AF 65 98.3 1.3E-06 4.5E-11 78.1 8.7 71 9-109 5-85 (87)
118 2qfj_A FBP-interacting repress 98.3 1.8E-06 6E-11 89.4 10.8 83 9-115 124-206 (216)
119 2fc9_A NCL protein; structure 98.3 1.2E-06 4E-11 81.1 8.4 80 7-114 12-91 (101)
120 3d2w_A TAR DNA-binding protein 98.3 1.4E-06 4.8E-11 79.6 8.8 75 6-111 7-81 (89)
121 1x4d_A Matrin 3; structural ge 98.3 8.4E-07 2.9E-11 83.9 7.4 76 9-112 14-90 (102)
122 2cjk_A Nuclear polyadenylated 98.3 9.6E-07 3.3E-11 87.7 8.2 94 10-141 3-96 (167)
123 2e5g_A U6 snRNA-specific termi 98.3 2.8E-06 9.4E-11 77.7 10.6 81 5-115 3-83 (94)
124 2cpx_A Hypothetical protein FL 98.3 1.3E-06 4.5E-11 82.5 8.6 79 9-115 24-106 (115)
125 2fc8_A NCL protein; structure 98.3 1E-06 3.5E-11 81.5 7.7 81 6-113 11-91 (102)
126 1wg1_A KIAA1579 protein, homol 98.3 7.2E-07 2.5E-11 80.8 6.5 76 10-116 5-80 (88)
127 2g4b_A Splicing factor U2AF 65 98.3 1.7E-06 5.7E-11 86.3 9.7 78 10-111 94-171 (172)
128 2dnl_A Cytoplasmic polyadenyla 98.3 8.1E-07 2.8E-11 84.5 6.9 79 7-109 5-83 (114)
129 1x4g_A Nucleolysin TIAR; struc 98.3 2.5E-06 8.5E-11 80.2 10.1 78 8-115 23-100 (109)
130 3nmr_A Cugbp ELAV-like family 98.3 2.2E-06 7.4E-11 85.4 10.2 98 10-141 3-104 (175)
131 2cjk_A Nuclear polyadenylated 98.3 1.2E-06 4E-11 87.0 8.1 77 10-111 87-163 (167)
132 3q2s_C Cleavage and polyadenyl 98.3 1.4E-06 4.6E-11 93.5 9.0 79 9-111 67-147 (229)
133 2dha_A FLJ20171 protein; RRM d 98.3 5.6E-07 1.9E-11 87.8 5.5 77 10-111 23-102 (123)
134 1why_A Hypothetical protein ri 98.3 2.4E-06 8.4E-11 78.4 9.6 76 6-111 13-90 (97)
135 2m2b_A RNA-binding protein 10; 98.3 5.9E-07 2E-11 87.5 5.7 83 6-111 19-105 (131)
136 2qfj_A FBP-interacting repress 98.3 2E-06 6.7E-11 89.0 9.7 80 9-112 27-106 (216)
137 1l3k_A Heterogeneous nuclear r 98.3 2E-06 6.8E-11 87.6 9.6 79 9-112 103-181 (196)
138 1x5o_A RNA binding motif, sing 98.3 2E-06 6.8E-11 81.3 8.9 65 8-95 23-87 (114)
139 2a3j_A U1 small nuclear ribonu 98.3 2.4E-06 8.4E-11 83.6 9.6 81 9-116 28-112 (127)
140 1x4f_A Matrin 3; structural ge 98.3 7.1E-07 2.4E-11 85.9 5.6 75 9-111 24-99 (112)
141 2la4_A Nuclear and cytoplasmic 98.3 2.2E-06 7.5E-11 79.2 8.7 72 9-110 26-97 (101)
142 2cqh_A IGF-II mRNA-binding pro 98.3 1.7E-06 5.7E-11 78.8 7.6 80 6-115 4-84 (93)
143 2voo_A Lupus LA protein; RNA-b 98.2 2.3E-06 7.9E-11 89.3 9.6 76 9-110 108-183 (193)
144 2jvo_A Nucleolar protein 3; nu 98.2 2.4E-06 8.2E-11 80.8 8.8 76 6-113 27-102 (108)
145 2dgt_A RNA-binding protein 30; 98.2 5.1E-06 1.8E-10 75.5 10.6 78 5-114 5-82 (92)
146 2j8a_A Histone-lysine N-methyl 98.2 1.8E-06 6E-11 85.1 7.8 83 10-114 2-96 (136)
147 1whx_A Hypothetical protein ri 98.2 3.5E-06 1.2E-10 80.0 9.6 81 6-116 6-86 (111)
148 2f3j_A RNA and export factor b 98.2 1.9E-06 6.7E-11 88.7 8.4 82 9-115 87-168 (177)
149 2hgn_A Heterogeneous nuclear r 98.2 4.8E-07 1.6E-11 90.1 3.7 80 9-115 45-124 (139)
150 1wel_A RNA-binding protein 12; 98.2 6.5E-07 2.2E-11 86.3 4.3 79 9-112 24-102 (124)
151 2cpj_A Non-POU domain-containi 98.2 2.5E-06 8.7E-11 78.6 8.1 75 9-113 14-88 (99)
152 1x4c_A Splicing factor, argini 98.2 6.4E-06 2.2E-10 77.4 11.0 77 7-114 12-93 (108)
153 2cpd_A Apobec-1 stimulating pr 98.2 8.5E-06 2.9E-10 75.1 11.3 73 9-112 14-87 (99)
154 3nmr_A Cugbp ELAV-like family 98.2 5E-06 1.7E-10 82.8 10.3 79 8-110 93-173 (175)
155 2xnq_A Nuclear polyadenylated 98.2 6.2E-06 2.1E-10 76.3 10.2 73 7-111 19-92 (97)
156 2i2y_A Fusion protein consists 98.2 4.2E-06 1.4E-10 83.0 9.7 75 7-110 70-144 (150)
157 2yh0_A Splicing factor U2AF 65 98.2 4.5E-06 1.5E-10 85.2 10.1 80 8-111 112-191 (198)
158 2dgu_A Heterogeneous nuclear r 98.2 1E-05 3.4E-10 75.2 11.5 74 9-114 10-83 (103)
159 1wf1_A RNA-binding protein RAL 98.2 5.4E-06 1.8E-10 78.0 9.3 74 7-112 24-98 (110)
160 2dnp_A RNA-binding protein 14; 98.2 6.6E-06 2.3E-10 74.5 9.5 77 6-114 5-81 (90)
161 1b7f_A Protein (SXL-lethal pro 98.1 5.6E-06 1.9E-10 82.0 9.4 78 9-110 88-167 (168)
162 2lcw_A RNA-binding protein FUS 97.4 3E-07 1E-11 87.5 0.0 81 8-112 5-93 (116)
163 1wf0_A TDP-43, TAR DNA-binding 98.1 3.3E-06 1.1E-10 76.2 6.9 72 9-111 4-75 (88)
164 3egn_A RNA-binding protein 40; 98.1 2.7E-06 9.1E-11 83.8 6.6 76 9-111 44-127 (143)
165 4f02_A Polyadenylate-binding p 98.1 6.3E-06 2.1E-10 86.4 9.3 76 10-111 103-178 (213)
166 1fje_B Nucleolin RBD12, protei 98.1 8.1E-06 2.8E-10 81.9 9.7 76 7-111 96-171 (175)
167 1fje_B Nucleolin RBD12, protei 98.1 3.1E-06 1.1E-10 84.9 6.4 100 6-141 9-108 (175)
168 2e44_A Insulin-like growth fac 98.1 9.5E-06 3.2E-10 74.1 8.8 79 8-114 13-92 (96)
169 1x5p_A Negative elongation fac 98.1 1.9E-05 6.5E-10 72.5 10.7 75 8-114 13-87 (97)
170 2kvi_A Nuclear polyadenylated 98.1 6.1E-06 2.1E-10 75.8 7.1 75 8-114 8-83 (96)
171 3pgw_S U1-70K; protein-RNA com 98.0 7.8E-06 2.7E-10 95.7 9.6 81 9-113 101-181 (437)
172 2ghp_A U4/U6 snRNA-associated 98.0 8.8E-06 3E-10 88.7 9.4 78 7-111 38-115 (292)
173 3smz_A Protein raver-1, ribonu 98.0 2.2E-05 7.6E-10 85.2 11.9 100 10-142 95-194 (284)
174 2adc_A Polypyrimidine tract-bi 98.0 3.5E-05 1.2E-09 81.6 12.6 78 8-114 32-110 (229)
175 1fxl_A Paraneoplastic encephal 98.0 1.7E-05 5.9E-10 78.1 9.6 77 9-109 87-165 (167)
176 2g4b_A Splicing factor U2AF 65 98.0 2.1E-05 7.2E-10 78.3 9.8 72 10-111 4-85 (172)
177 2yh0_A Splicing factor U2AF 65 98.0 4.7E-05 1.6E-09 77.5 12.6 74 9-112 3-86 (198)
178 2wbr_A GW182, gawky, LD47780P; 98.0 2.2E-05 7.6E-10 72.5 8.9 76 9-114 6-81 (89)
179 1qm9_A Polypyrimidine tract-bi 97.9 2E-05 6.7E-10 80.9 8.9 78 10-116 3-81 (198)
180 3pgw_A U1-A; protein-RNA compl 97.9 2.1E-05 7.3E-10 85.2 9.4 78 8-112 7-88 (282)
181 1sjr_A Polypyrimidine tract-bi 97.9 4.5E-05 1.5E-09 78.0 10.9 79 9-114 45-124 (164)
182 3beg_B Splicing factor, argini 97.9 1.7E-05 5.7E-10 75.7 7.2 70 9-109 15-89 (115)
183 3u1l_A PRE-mRNA-splicing facto 97.9 2.3E-05 7.8E-10 84.9 9.1 81 8-116 132-231 (240)
184 3tyt_A Heterogeneous nuclear r 97.9 2.6E-05 8.8E-10 82.0 8.9 74 10-112 4-78 (205)
185 2cq2_A Hypothetical protein LO 97.8 4.3E-05 1.5E-09 73.8 8.6 80 9-116 24-108 (114)
186 3sde_A Paraspeckle component 1 97.8 4.9E-05 1.7E-09 82.2 10.2 74 8-111 20-93 (261)
187 2ghp_A U4/U6 snRNA-associated 97.8 3.3E-05 1.1E-09 84.1 8.9 78 9-111 209-288 (292)
188 3sde_A Paraspeckle component 1 97.8 5E-05 1.7E-09 82.1 9.4 80 10-112 96-177 (261)
189 3smz_A Protein raver-1, ribonu 97.8 4.1E-05 1.4E-09 83.1 8.4 81 8-113 182-263 (284)
190 2pe8_A Splicing factor 45; RRM 97.7 0.00018 6E-09 68.1 10.8 85 8-116 6-96 (105)
191 2bz2_A Negative elongation fac 97.7 6E-05 2E-09 72.8 7.5 74 9-114 38-111 (121)
192 1jmt_A Splicing factor U2AF 35 97.7 4.3E-05 1.5E-09 72.0 5.8 74 15-112 20-104 (104)
193 3pgw_A U1-A; protein-RNA compl 97.6 0.00013 4.5E-09 79.0 9.3 73 9-110 206-279 (282)
194 1qm9_A Polypyrimidine tract-bi 97.6 8.2E-05 2.8E-09 76.2 6.9 72 10-110 120-193 (198)
195 2adc_A Polypyrimidine tract-bi 97.6 0.00016 5.3E-09 76.6 8.9 72 10-110 151-224 (229)
196 3zzy_A Polypyrimidine tract-bi 97.5 0.00068 2.3E-08 66.8 11.3 79 9-115 27-107 (130)
197 2e5i_A Heterogeneous nuclear r 97.4 0.00087 3E-08 65.5 11.0 73 10-111 25-99 (124)
198 2dit_A HIV TAT specific factor 97.3 0.00068 2.3E-08 64.1 8.7 76 8-111 13-99 (112)
199 3tyt_A Heterogeneous nuclear r 97.2 0.0003 1E-08 73.9 6.3 62 10-95 123-186 (205)
200 2diu_A KIAA0430 protein; struc 97.2 0.0012 4E-08 61.8 9.3 76 8-116 7-86 (96)
201 2d9o_A DNAJ (HSP40) homolog, s 97.2 0.001 3.6E-08 62.4 8.7 62 20-112 27-88 (100)
202 3v4m_A Splicing factor U2AF 65 97.1 0.0016 5.5E-08 61.4 8.8 85 10-116 5-99 (105)
203 3tht_A Alkylated DNA repair pr 96.8 0.0022 7.5E-08 72.9 8.4 64 8-99 16-81 (345)
204 3ue2_A Poly(U)-binding-splicin 96.8 0.0032 1.1E-07 60.8 8.3 88 9-116 19-111 (118)
205 3s6e_A RNA-binding protein 39; 95.9 0.0078 2.7E-07 57.8 5.6 78 10-115 7-94 (114)
206 1owx_A Lupus LA protein, SS-B, 95.9 0.017 5.7E-07 56.3 7.6 74 8-109 16-91 (121)
207 2dhx_A Poly (ADP-ribose) polym 95.4 0.054 1.8E-06 51.2 8.7 81 4-114 2-84 (104)
208 3dxb_A Thioredoxin N-terminall 93.2 0.091 3.1E-06 55.0 5.9 45 70-116 171-215 (222)
209 2dnr_A Synaptojanin-1; RRM dom 92.2 0.29 9.8E-06 45.4 7.0 57 25-114 30-86 (91)
210 1ufw_A Synaptojanin 2; RNP dom 91.2 0.26 8.8E-06 46.0 5.5 54 25-111 39-92 (95)
211 1wwh_A Nucleoporin 35, nucleop 76.3 8.3 0.00028 37.3 8.3 70 8-109 22-92 (119)
212 2kn4_A Immunoglobulin G-bindin 75.2 2 7E-05 42.0 4.0 25 71-95 10-34 (158)
213 2l9w_A U4/U6 snRNA-associated- 67.9 14 0.00048 35.5 7.6 71 10-109 21-95 (117)
214 1whv_A Poly(A)-specific ribonu 47.5 15 0.0005 34.5 3.8 60 5-94 10-69 (100)
215 3ctr_A Poly(A)-specific ribonu 45.1 16 0.00056 34.3 3.7 52 13-94 8-59 (101)
216 3pq1_A Poly(A) RNA polymerase; 41.2 12 0.0004 44.2 2.6 58 9-94 52-109 (464)
217 2i2y_A Fusion protein consists 40.8 37 0.0013 32.7 5.9 69 71-141 10-82 (150)
218 3p3d_A Nucleoporin 53; structu 34.5 94 0.0032 30.6 7.4 84 11-109 8-94 (132)
219 1b64_A Elongation factor 1-bet 33.1 51 0.0018 30.4 5.0 58 448-508 20-77 (91)
220 1f60_B Elongation factor EEF1B 30.4 59 0.002 30.1 5.0 58 448-508 23-80 (94)
221 2w7a_A LINE-1 ORF1P; RNA-bindi 29.6 1.8E+02 0.0061 27.2 8.1 38 72-109 60-98 (100)
222 1gh8_A Translation elongation 23.4 76 0.0026 29.1 4.3 58 448-508 18-75 (89)
223 2yy3_A Elongation factor 1-bet 21.0 96 0.0033 28.6 4.5 58 448-508 20-78 (91)
No 1
>2j7n_A RNA-dependent RNA polymerase; RNAI response, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A
Probab=100.00 E-value=1e-109 Score=1030.76 Aligned_cols=489 Identities=24% Similarity=0.348 Sum_probs=382.2
Q ss_pred CCCcEEEEEEecCCCCccccccccccccccccccccCCcccchhHHHHHHHHhcCC-eeEcCeEEEEEEec---------
Q 048783 408 VADRFLRVTFMDEGLQTMNANVLSYYVAPIVKDITSNSFSQKTGVFKRVKSILSDG-FNLCGRRYSFLAFS--------- 477 (1117)
Q Consensus 408 ~~drFLRV~F~DE~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~i~~Rv~~~L~~G-i~I~gR~y~FLafS--------- 477 (1117)
++||||||+|.+++... ++.++..+. ....+++|.++|.+| +.++||+|+.+-.-
T Consensus 151 GsDrFL~V~fp~~~~~~-------~~~~~~~~~--------~~~~~~~v~~~l~~~~~~~~gr~~r~f~~~d~~~r~~~~ 215 (1022)
T 2j7n_A 151 GPDRFFEILIPSPTSTS-------PSVPPVVSK--------QPAAVEEVIQWLTMGQHSLVGRQWRAFFAKDAGYRKPLR 215 (1022)
T ss_dssp CGGGEEEEEEECTTCCC-------SSSCTTSSS--------SSSCHHHHHHHHHSSCEEETTEEEEEEEEEECC------
T ss_pred CCceeEEEEecCCcccc-------ccccchhcc--------chHHHHHHHHHHhcCcEEEecceeEEEeecccccccccc
Confidence 59999999999986531 111122211 112366777777666 44667766644321
Q ss_pred ccccc--------cceEEEEecCC------------------------CCCHHHHHHHhcCCC-C--CCHHHHHHHhhcc
Q 048783 478 SNQLR--------DHSAWFFSKVG------------------------ETSVLDIKNWMGEFT-A--KNIAKYAARMGLC 522 (1117)
Q Consensus 478 ~SQLR--------~~s~wFfa~~~------------------------~~t~~~Ir~wmG~F~-~--~~vaK~aARlgq~ 522 (1117)
..|+| ...||||+++| .+|+++||+|||+|+ + +++||||||||||
T Consensus 216 ~~~l~~~~~~~~~~~Rv~~f~~~G~~i~~~~f~fl~~s~lre~s~~~~~ls~~~ir~wmg~f~~n~~q~~aK~aARigq~ 295 (1022)
T 2j7n_A 216 EFQLRAEDPKPIIKERVHFFAETGITFRPDVFKTRSVVPAEEPVEQRTEFKVSQMLDWLLQLDNNTWQPHLKLFSRIQLG 295 (1022)
T ss_dssp --------CCCCCEEEEEEEEEEETTCBCCCC-------------CCBCCCHHHHHHHHHCGGGCTTSBHHHHHHTTHHH
T ss_pred ccccccccccccccceEEEEeccCccccCccccccccccccccccccCCCCHHHHHHhccChhhcccchHHHHHHHhhhh
Confidence 12222 14566666432 279999999999998 4 5699999999999
Q ss_pred CCCcceeeeeCCCceeeecCcccc---CCccccccccccCHHHHHHHHHHhCCCCCCCCceEEEeecCceeeEEecCCCC
Q 048783 523 FSSTHATVEIPPTEVDHELPDIKR---NGYVFSDGIGKITPDLAMEVAQILKLDGSPPPSAYQIRYAGYKGVVACWPAKD 599 (1117)
Q Consensus 523 FSsT~~tv~v~~~~i~~~I~DI~~---~g~~FSDG~G~IS~~lA~~I~~~l~l~~~~~PSAfQiR~gG~KGvL~vdp~~~ 599 (1117)
||+|.+|+.|++++|...+|||++ |||+||||||+||++||++|++++++. ..|||||||||||||||+|||++.
T Consensus 296 FS~T~~tv~v~~~~I~~~~dDI~~~~g~g~vFTDGvG~IS~~lA~~I~~~l~l~--~~PSAfQiR~gGaKGvl~vdp~~~ 373 (1022)
T 2j7n_A 296 LSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVLGLG--DVPSAVQGRFGSAKGMWVIDVDDT 373 (1022)
T ss_dssp HSBCEEEEECCGGGEEECSSCCBCTTSSCCBSSTTEEEECHHHHHHHHHHHTCS--SCCSEEEEEETTEEEEEEECTTCC
T ss_pred hcCccCcEEechHHEEEcCCccccCCCCCCeecCCchHhhHHHHHHHHHHcCCC--CCCcEEEEEeccceEEEEECcccC
Confidence 999999999999999533589986 779999999999999999999999997 489999999999999999999863
Q ss_pred -CCCeEEEcCCccCccc-----CCceeEEeecC-CCCcCcccHHHHHHHhcCCCCHHHHHHHHHHH-HHHH-------HH
Q 048783 600 -DGIRMSLRGSMKKFKS-----CHTSLEICSWT-RFQPGFLNRQIITLLSTLNVSDEIFWTVQASM-ASKL-------NL 664 (1117)
Q Consensus 600 -~g~~I~lR~Sm~KF~s-----~~~~LEIv~~S-~~~p~~LNRQlI~lLs~lGVp~evF~~lq~~~-l~~l-------~~ 664 (1117)
++.+|+|||||+||++ .+++||||+|| ++.|++||||+|+||+++||+.++|++++.++ .+.| ..
T Consensus 374 ~~~~~I~lRpSm~KF~~~~~d~~~~~LEIv~~s~~~~~~~LNRQlI~lL~~lGV~~~~f~~~i~~~~~~~L~~~l~~~~~ 453 (1022)
T 2j7n_A 374 GDEDWIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKH 453 (1022)
T ss_dssp SCCCCEEECTTTBCSCCCCCSGGGSEEEEEEECCCCCCCCBCTTTHHHHHHTBSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeCCcceeecCCCCCcccCeEEEEeecCCCCCceecHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357999999999986 46899999997 68999999999999999999999998875444 3333 34
Q ss_pred HhhCHHHHHHHHHhcc-------------------cccccHHHHHHHCCCCCCCchhhhhcch-----------------
Q 048783 665 MLVASDVAFEVLTASC-------------------AEQGNTAAIMLSAGFKPQTEPHLQGMLT----------------- 708 (1117)
Q Consensus 665 ~l~d~~~A~~~L~~~~-------------------~e~~~~~~~ml~~Gf~~~~ePflr~lL~----------------- 708 (1117)
++.++..+..++.... ....+.+..|+.+||.|.++|||++++.
T Consensus 454 al~~~~~~r~~l~~~~~~~~~r~~~g~~~~~~glp~s~~~~l~~Ll~aGf~p~~epfL~~~l~~~~~~~l~~LK~k~rI~ 533 (1022)
T 2j7n_A 454 ALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIR 533 (1022)
T ss_dssp HTTSHHHHHHHHHHHSCCHHHHHHHTSCCEETTEESSHHHHHHHHHHTTCCTTTBHHHHHHHHHHHHHHHHHHHHHCCBC
T ss_pred HhhCHHHHHHHHHhhccccccccccccchhhccCccchHHHHHHHHHcCCCccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5666666655553211 0122467889999999999999987642
Q ss_pred -----------hcccccCCCeEEEeecccccccccccCCCccccccceeEEe-eeEEEEeCCCCCCCCceEEEEecCCCC
Q 048783 709 -----------YELGELKECQCFIQVSESSLENCFSKHGSRFAETKKLQVIN-GFVVIAKNPCLRPGDVRILEAVDRPEL 776 (1117)
Q Consensus 709 -----------DetG~L~~GeVfvq~s~~~~~~~~~~~g~~~~~~~~~~vi~-G~VlVtRnPclHPGDIrvv~AVd~PeL 776 (1117)
||||+|+||||||+++....+ +.+...++. |+|+|+|||||||||||+|+||++|+|
T Consensus 534 V~~s~~L~GV~DetG~L~eGEVfv~~s~~~~~-----------~~~~~~~l~gg~VlVtRnP~lhPGDIrvv~AV~~PeL 602 (1022)
T 2j7n_A 534 VGRSAYIYMIADFWGVLEENEVHVGFSSKFRD-----------EEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPEL 602 (1022)
T ss_dssp CSSEEEEEEEECTTSCCCTTEEEEEEEEEEEE-----------TTEEEEEECSEEEEEECSSCCSGGGEEEEEECCCGGG
T ss_pred cccceEEEEEecCCCccCCCeEEEEecccccc-----------CCCCceeecCceEEEEeCCCcCcCceeEEEeccChhh
Confidence 999999999999999863110 012245565 699999999999999999999999999
Q ss_pred cccCCeEEeCCCCCCCCCcccCCCCCCCCeEEEeecCCCCCCCCCCCCCCC-----CCCCCCCcc---------c---c-
Q 048783 777 HHLCDCLVFPQKGDRPHTNEASGSDLDGDLYYVTWDENLIPPSKKSCPPME-----CTPAEAKPL---------T---C- 838 (1117)
Q Consensus 777 ~hL~dvIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lip~~~~~~~P~~-----y~~~~~~~l---------~---r- 838 (1117)
|||+|||||||+|+|||||||||||||||+|||||||+|||++.++..|.. |.+.+...+ + +
T Consensus 603 ~hL~DvIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lv~~f~na~~p~~p~~~~y~~k~~~~~~~~~~~~~~g~~~~~ 682 (1022)
T 2j7n_A 603 HSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDKTTFKQLMASHGTGSAAKE 682 (1022)
T ss_dssp TTCCSEEEECSCSSSCHHHHTTTCCSSSCEEEEECCHHHHHTBCCCCCCCCCCCTTTSEECCCBHHHHHTTTCSSHHHHH
T ss_pred hccCCeEEccCCCCCCChhHhcCCCCCCCeEEEEechhhcccccCCCCCCCCchhhhccccccchhhhhhccccccccCc
Confidence 999999999999999999999999999999999999999998865433322 211111111 0 0
Q ss_pred -------------cccccchhhHHHHHHHhhccCcCCCCChhHHHHHHHHHhccCCCCCCCeeec--CCCCCCCCCCCCC
Q 048783 839 -------------HVNHQNLGQICNAHVVHADRSEYGAFDENCILLAKLAATAVDSPKTGKIVTM--PSHLKPKKYPDFM 903 (1117)
Q Consensus 839 -------------~v~~~~LG~IsnaHl~~AD~~~~G~~d~~Cl~LA~L~S~AVDf~KTG~~v~~--p~~L~p~~~PdFM 903 (1117)
.+..+.||+|||+|+..+|. +.|+.|++|++||+|||+||||||||++|++ ++.|+|+.|||||
T Consensus 683 ~~~~d~i~~ff~~~m~~d~LG~is~~h~~~~~~-~~g~~~~~cl~LA~L~S~AVD~~KtG~pv~~~~~~~lr~~~~p~~m 761 (1022)
T 2j7n_A 683 QTTYDMIQKSFHFALQPNFLGMCTNYKERLCYI-NNSVSNKPAIILSSLVGNLVDQSKQGIVFNEASWAQLRRELLGGAL 761 (1022)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-HTCSSSHHHHHHHHHHHHHTTHHHHTEECCHHHHHHHHHHHSCCSS
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCccccCcccChhhhhhhhHhhCCCCC
Confidence 01235899999999876654 6899999999999999999999999999998 7789999999999
Q ss_pred CcccCCccccc---------chhhHHHHHHhh
Q 048783 904 EIEEYQTYKSN---------KILGRLYRQIKG 926 (1117)
Q Consensus 904 ~k~~~~~Y~S~---------kiLG~LYr~v~~ 926 (1117)
+ .++++|+|+ +||++|+++|..
T Consensus 762 ~-~~~p~Y~s~~~~g~~~~~~iid~l~f~va~ 792 (1022)
T 2j7n_A 762 S-LPDPMYKSDSWLGRGEPTHIIDYLKFSIAR 792 (1022)
T ss_dssp C-CCCCGGGSSSCCSSSSCCSHHHHHHHTTHH
T ss_pred C-CCCCccccCcccCCCCccchhhheeeehhh
Confidence 9 556899996 456778877665
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.83 E-value=1.2e-08 Score=95.29 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=68.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.|+|+|+|+|.+++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|..
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRD---------------------KVAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------SSSCCEEEEEEEEESSHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeec---------------------CCCCcccccEEEEECCHHHHHH
Confidence 478999999999999999999987 899999999886 4457899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeec
Q 048783 90 AMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|+.... ...++|+.|+|..
T Consensus 77 Ai~~ln--g~~~~gr~l~V~~ 95 (99)
T 4fxv_A 77 AINTLN--GLRLQSKTIKVSY 95 (99)
T ss_dssp HHHHHT--TCEETTEECEEEE
T ss_pred HHHHhC--CCEECCEEEEEEE
Confidence 998653 3678999999983
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.81 E-value=5.1e-09 Score=96.20 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=66.9
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVG-GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.++|.|+|+|.+++.+||.++|+. .| .|..|+|..+ +..+++++||||+|.+.++|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d---------------------~~t~~~rg~aFV~F~~~~~A~ 58 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRN---------------------KSSGQSRGFAFVEFSHLQDAT 58 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSC---------------------SSSCCCSSEEEEECSSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEec---------------------CCCCCcCceEEEEecCHHHHH
Confidence 368999999999999999999998 67 6877777654 445789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeec
Q 048783 89 RAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.|+.+.. +.+.++|+.|+|..
T Consensus 59 ~Ai~~~~-~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 59 RWMEANQ-HSLNILGQKVSMHY 79 (91)
T ss_dssp HHHHTTT-TEEEETTEEEEEEC
T ss_pred HHHHhcC-CCeEECCEEEEEEE
Confidence 9998653 35789999999983
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.78 E-value=2.8e-08 Score=88.33 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=68.0
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
+.+|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.+.++|..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~ 58 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWD---------------------MQTGSSRGYGFVSFTSQDDAQN 58 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEEC---------------------TTTCCEEEEEEEEESCHHHHHH
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEc---------------------CCCCCccceEEEEECCHHHHHH
Confidence 478999999999999999999987 799999999876 3457899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecC
Q 048783 90 AMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|+.... ...++|+.|+|..+
T Consensus 59 a~~~l~--g~~~~g~~l~v~~a 78 (83)
T 3md1_A 59 AMDSMQ--GQDLNGRPLRINWA 78 (83)
T ss_dssp HHHHHT--TCEETTEECEEEEC
T ss_pred HHHHhc--CCeeCCcEEEEEec
Confidence 999653 25679999999844
No 5
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.76 E-value=2.4e-08 Score=95.34 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=67.5
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ..++++||||+|.+.++|..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d-----------------------~~~~kg~afV~f~~~~~A~~ 60 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCD-----------------------ENGSKGYGFVHFETQEAAER 60 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-----------------------TTEEEEEEEEEESCHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeec-----------------------CCCCCceEEEEECCHHHHHH
Confidence 578999999999999999999987 799999999875 24578999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
|+.... ...++|+.|+|.....
T Consensus 61 Ai~~l~--~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 61 AIEKMN--GMLLNDRKVFVGRFKS 82 (115)
T ss_dssp HHHHHT--TCEETTEECEEEESSC
T ss_pred HHHHcC--CCEECCEEEEEEECCC
Confidence 998653 3578999999985443
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.75 E-value=3.2e-08 Score=88.79 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=68.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.+.++|..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A~~ 63 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKD---------------------MATGKSKGYGFVSFFNKWDAEN 63 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEec---------------------CCCCccceEEEEEECCHHHHHH
Confidence 579999999999999999999997 899999999875 3357899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecC
Q 048783 90 AMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|+.... ...++|+.|+|..+
T Consensus 64 A~~~l~--g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 64 AIQQMG--GQWLGGRQIRTNWA 83 (87)
T ss_dssp HHHHHT--TCEETTEECEEEEE
T ss_pred HHHHcC--CCEECCeEEEEEec
Confidence 999653 25789999999843
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.74 E-value=6.4e-08 Score=89.19 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=72.8
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~ 61 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPID---------------------SLTKKPKGFAFVTFMFPE 61 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCC---------------------TTTCCCCSEEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEec---------------------CCCCCcCeEEEEEECCHH
Confidence 3456789999999999999999999987 799999998875 335789999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
+|..|+.... ...++|+.|+|..+...+
T Consensus 62 ~a~~A~~~l~--g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 62 HAVKAYAEVD--GQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp HHHHHHHHTT--TEESSSCEEEEEECCCCS
T ss_pred HHHHHHHHhC--CCEECCcEEEEEEcCCCc
Confidence 9999997663 367899999999655444
No 8
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.73 E-value=4.1e-08 Score=88.35 Aligned_cols=81 Identities=22% Similarity=0.420 Sum_probs=69.2
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
..+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~ 63 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMD---------------------PNTGRSRGFGFILFKDA 63 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------TTTCCEEEEEEEEESST
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeec---------------------CCCCccccEEEEEECCH
Confidence 34556789999999999999999999976 799999999876 34578999999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeec
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
++|..|+.+.+ ..++|+.|+|..
T Consensus 64 ~~a~~A~~~~~---~~~~g~~i~v~~ 86 (87)
T 3s7r_A 64 ASVEKVLDQKE---HRLDGRVIDPKK 86 (87)
T ss_dssp HHHHHHHHSSC---EEETTEEEEEEE
T ss_pred HHHHHHHHhCC---CEECCEEEEEEe
Confidence 99999997643 358999999873
No 9
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=1.4e-08 Score=89.09 Aligned_cols=75 Identities=15% Similarity=0.314 Sum_probs=66.7
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
+||+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+.++|..|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~a 58 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRD---------------------PLTKRSRGFGFVTFMDQAGVDKV 58 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECC---------------------CCSSSCSSEEEECCCCTTHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecC---------------------CCCCCcCceEEEEEcCHHHHHHH
Confidence 57999999999999999999988 799999998875 33478999999999999999999
Q ss_pred HHhhcccceeccCeeeeeec
Q 048783 91 MDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
+.... ..++|+.|+|..
T Consensus 59 ~~~~~---~~~~g~~l~v~~ 75 (77)
T 1uaw_A 59 LAQSR---HELDSKTIDPKV 75 (77)
T ss_dssp HHTTT---CCCSSCCCEEEE
T ss_pred HHhCC---CccCCEEEEEEe
Confidence 99874 788999999874
No 10
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.71 E-value=5.8e-08 Score=87.43 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=68.0
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|++..+ ...++++++|||+|.+.++|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a 61 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCD---------------------KFSGHPKGFAYIEFSDKESV 61 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEES---------------------CSSSSCCEEEEEEESSTHHH
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEec---------------------CCCCCcceEEEEEECCHHHH
Confidence 34679999999999999999999997 799999999876 33578899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+ ... ...++|+.|+|..+
T Consensus 62 ~~a~-~~~--g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 62 RTSL-ALD--ESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHG-GGT--TCEETTEECEEEET
T ss_pred HHHH-hcC--CCEECCcEEEEEEc
Confidence 9999 332 35689999999943
No 11
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=3e-08 Score=93.47 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=69.2
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+.-.++|+|+|+|.+++.++|.++|+. .|.|..|+|..+ +. ++++++|||+|.+.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d---------------------~~-g~~rG~aFV~F~~~e 63 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRT---------------------LH-KAFKGSIFVVFDSIE 63 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECC---------------------CT-TSCCCEEEEEESSHH
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEEC---------------------CC-CCCccEEEEEECCHH
Confidence 3455689999999999999999999997 899999999886 33 789999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeec
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
+|..|+.+ +...++|+.|+|..
T Consensus 64 ~a~~Ai~~---~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 64 SAKKFVET---PGQKYKETDLLILF 85 (103)
T ss_dssp HHHHHHTS---SCCCCTTTTCEEEE
T ss_pred HHHHHHHc---CCCEECCEEEEEEE
Confidence 99999994 24678999999983
No 12
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.70 E-value=5.4e-08 Score=89.43 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=70.7
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...++++++|||+|.+.++|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFD---------------------PQTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBC---------------------TTTCCBCSEEEEEESSHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeC---------------------CCCCccceEEEEEECCHHHHHH
Confidence 478999999999999999999997 799999999875 3347889999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
|+.... ...++|+.|+|..+...+
T Consensus 60 Ai~~l~--g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 60 AVRNLN--GYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp HHHHHT--TCEETTEECEEEECSCSS
T ss_pred HHHHhC--CCeECCeEEEEEEcCCCC
Confidence 998664 367899999999665554
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=7.5e-08 Score=87.77 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=70.0
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +..++++++|||+|.+.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 69 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYD---------------------QQSRRSRGFAFVYFENVDD 69 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEEC---------------------SSSSSEEEEEEEEESSHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEc---------------------CCCCCcccEEEEEECCHHH
Confidence 345689999999999999999999988 899999999876 3456889999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeec
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|..|+.... ...++|+.|+|..
T Consensus 70 A~~A~~~l~--g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 70 AKEAKERAN--GMELDGRRIRVSG 91 (95)
T ss_dssp HHHHHHHHT--TEEETTEEEEEEC
T ss_pred HHHHHHHhC--CCEECCEEEEEEe
Confidence 999999763 3778999999984
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=6.9e-08 Score=88.14 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=70.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.++|..
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~ 62 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKD---------------------SDTGRSKGYGFITFSDSECARR 62 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECC---------------------SSSCCCCSEEEEEESCHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeec---------------------CCCCceeeEEEEEECCHHHHHH
Confidence 579999999999999999999987 899999999875 3457899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|+.... ...++|+.|+|..+...
T Consensus 63 A~~~l~--g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 63 ALEQLN--GFELAGRPMRVGHVTER 85 (95)
T ss_dssp HHHHHT--TCCSSSSCCEEEESSCC
T ss_pred HHHHhC--CCeeCCcEEEEEEcccc
Confidence 999653 36789999999955444
No 15
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.1e-07 Score=90.43 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=73.7
Q ss_pred cccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 4 REKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 4 ~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
...+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|... ...+++++||||+|.+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITD---------------------RQTGKSRGYGFVTMAD 68 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCC---------------------SSSCCCCSEEEEEESS
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEc---------------------CCCCccceEEEEEECC
Confidence 345567799999999999999999999986 899999999875 3457899999999999
Q ss_pred hHHHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 84 STYITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.++|..|+.... . .++|+.|+|..+...
T Consensus 69 ~~~a~~Ai~~~~--~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 69 RAAAERACKDPN--P-IIDGRKANVNLAYLG 96 (116)
T ss_dssp HHHHHHHHTCSS--C-EETTEECEEEESTTT
T ss_pred HHHHHHHHHhCC--C-cCCCEEEEEEEcccC
Confidence 999999999875 3 689999999966443
No 16
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.67 E-value=5.5e-08 Score=86.83 Aligned_cols=80 Identities=24% Similarity=0.327 Sum_probs=68.5
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 61 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLD---------------------YETEKHRGFAFVEFELAED 61 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEE---------------------TTTTEECSEEEEEESSHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEEC---------------------CCCCccccEEEEEECCHHH
Confidence 345689999999999999999999987 899999998765 3356789999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeec
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|..|+.... ...++|+.|+|..
T Consensus 62 a~~A~~~l~--g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 62 AAAAIDNMN--ESELFGRTIRVNL 83 (85)
T ss_dssp HHHHHHHHT--TCEETTEECEEEE
T ss_pred HHHHHHHhC--CCEECCcEEEEEE
Confidence 999997653 3567999999984
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.3e-07 Score=87.32 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=70.3
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 64 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYD---------------------AEKQRPRGFGFITFEDEQS 64 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCC---------------------TTTCSCCSEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC---------------------CCCCCCCceEEEEECCHHH
Confidence 445689999999999999999999998 799999999875 3357899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
|..|+.+ +...++|+.|+|..+..
T Consensus 65 a~~A~~~---~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 65 VDQAVNM---HFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp HHHHHHH---CCCBSSSCBCEEEECCC
T ss_pred HHHHHHh---CCCEECCeEEEEEECCC
Confidence 9999984 23678999999995443
No 18
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.66 E-value=7.8e-08 Score=92.34 Aligned_cols=82 Identities=23% Similarity=0.262 Sum_probs=69.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +..+++++||||+|.+.++|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~ 92 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCD---------------------KFSGHPKGYAYIEFAERNSVD 92 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEE---------------------CTTSSCEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCCcccEEEEEECCHHHHH
Confidence 4689999999999999999999997 799999999875 335789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.|+.+- ...++|+.|+|..+..+.
T Consensus 93 ~A~~l~---g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 93 AAVAMD---ETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp HHHTTT---TCEETTEECEEEESSCCC
T ss_pred HHHhcC---CCeECCeEEEEEECCCCC
Confidence 999432 367899999999654443
No 19
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.66 E-value=2.8e-08 Score=92.57 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=68.8
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhcccc--EEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEec
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGG--VWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFA 82 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~--v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~ 82 (1117)
..+..-.||.|+|+|..+|.++|.++|+. .|. |..|+|..+ +..+++++||||+|.
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d---------------------~~tg~srG~aFV~f~ 61 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKD---------------------KQTQQNRGFAFVQLS 61 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCC---------------------SSSSSCSSEEEEECS
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEec---------------------CCCCCCceEeEEEEC
Confidence 34555678999999999999999999997 674 445666554 445789999999999
Q ss_pred ChHHHHHHHHhhccc--ceeccCeeeeeecC
Q 048783 83 TSTYITRAMDAAEHM--ELFLNGRALKVSLG 111 (1117)
Q Consensus 83 ~~e~a~~a~~~a~~~--~l~~~~~~Lkv~~~ 111 (1117)
+.++|..|+...... .+.++|+.|+|+.+
T Consensus 62 ~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 62 SAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp SSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 999999999986532 36899999999843
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.65 E-value=1.1e-07 Score=89.36 Aligned_cols=83 Identities=27% Similarity=0.306 Sum_probs=71.2
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A 70 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLH---------------------PDTEHSKGCAFAQFMTQEAA 70 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBC---------------------SSSCCBCSEEEEEESSHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCCCccEEEEEECCHHHH
Confidence 35689999999999999999999987 899999999875 34568999999999999999
Q ss_pred HHHHHhhccc----ceeccCeeeeeecCC
Q 048783 88 TRAMDAAEHM----ELFLNGRALKVSLGP 112 (1117)
Q Consensus 88 ~~a~~~a~~~----~l~~~~~~Lkv~~~~ 112 (1117)
..|+...... ...++|+.|+|..+.
T Consensus 71 ~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 71 QKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp HHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred HHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 9999987421 478999999999543
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=8.3e-08 Score=89.17 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=70.5
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.++|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A~ 69 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPRE---------------------PHTKAPRGFAFVRFHDRRDAQ 69 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBC---------------------SSSCSBCSCEEEEESSSSHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeC---------------------CCCCCCCeEEEEEECCHHHHH
Confidence 4689999999999999999999997 799999998875 345789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+.... ...++|+.|+|..+...
T Consensus 70 ~A~~~l~--g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 70 DAEAAMD--GAELDGRELRVQVARYG 93 (103)
T ss_dssp HHHHHHS--SCCBTTBCCEEEECSSC
T ss_pred HHHHHcC--CCEECCcEEEEEECCcC
Confidence 9999653 25689999999955443
No 22
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=7.8e-08 Score=89.66 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=70.7
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~ 70 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKD---------------------KTTNQSRGFGFVKFKDPNC 70 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------SSSCCEEEEEEEEESSTTH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---------------------CCCCCcceEEEEEECCHHH
Confidence 345689999999999999999999988 899999999886 3457899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.. +...++|+.|+|..+
T Consensus 71 a~~a~~~---~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 71 VGTVLAS---RPHTLDGRNIDPKPC 92 (105)
T ss_dssp HHHHHHH---CSEEETTEEEBCCCS
T ss_pred HHHHHHh---CCCeECCEEEEEEEc
Confidence 9999998 247899999999944
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=7.9e-08 Score=87.58 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=68.6
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.++|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A 71 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKD---------------------KDTRKSKGVAFILFLDKDSA 71 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCC---------------------SSSCCCTTCEEEEESCHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeC---------------------CCCCCcccEEEEEECCHHHH
Confidence 35679999999999999999999987 899999999875 34578899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeec
Q 048783 88 TRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
..|+.... ...++|+.|+|..
T Consensus 72 ~~A~~~l~--g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 72 QNCTRAIN--NKQLFGRVIKASI 92 (94)
T ss_dssp HHHHHHTT--TEEETTEEEEEEE
T ss_pred HHHHHHcC--CCeeCCcEEEEEe
Confidence 99998663 3678899999974
No 24
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.63 E-value=1.3e-07 Score=87.95 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=69.3
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+.. | |..|+|..+ ...+++++||||+|.+.++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a 69 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRD---------------------KDTDKFKGFCYVEFDEVDSL 69 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEEC---------------------SSSCSEEEEEEEEESSHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeec---------------------CCCCccceEEEEEECCHHHH
Confidence 356899999999999999999999998 8 999999986 44578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
..|+.+ +...++|+.|+|..+...
T Consensus 70 ~~A~~l---~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 70 KEALTY---DGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp HHHGGG---TTCEETTEECEEEECCCC
T ss_pred HHHHhh---CCCeECCeEEEEEEecCC
Confidence 999943 236789999999955433
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=9.8e-08 Score=88.86 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=70.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...++++++|||+|.+.++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a 70 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKD---------------------RVTGQHQGYGFVEFLSEEDA 70 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBC---------------------SSSCSBCSCEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCcCCcEEEEEECCHHHH
Confidence 35689999999999999999999998 799999998875 33578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
..|+.... ...++|+.|+|..+...
T Consensus 71 ~~A~~~l~--g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 71 DYAIKIMD--MIKLYGKPIRVNKASAH 95 (105)
T ss_dssp HHHHHHSS--SCBCSSCBCEEEETTTT
T ss_pred HHHHHHhC--CCeECCeEEEEEECCCC
Confidence 99999753 35689999999955443
No 26
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.63 E-value=1.2e-07 Score=85.98 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=69.4
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ .++++++|||+|.+.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~-----------------------~g~~~g~afV~f~~~~ 59 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKME-----------------------NGKSKGCGVVKFESPE 59 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEES-----------------------SSCEEEEEEEEESSHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcc-----------------------CCCcceEEEEEECCHH
Confidence 3445689999999999999999999998 799999999864 3678999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+|..|+.... ...++|+.|+|..+.
T Consensus 60 ~a~~a~~~l~--g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 60 VAERACRMMN--GMKLSGREIDVRIDR 84 (92)
T ss_dssp HHHHHHHHHT--TCCBTTBCCCCEECS
T ss_pred HHHHHHHHhC--CCEECCcEEEEEEcC
Confidence 9999999653 256899999999443
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.63 E-value=1.3e-07 Score=90.05 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=71.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d---------------------~~tg~~rG~aFV~f~~~~~A~ 62 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLH---------------------PRTRKHLGLARVLFTSTRGAK 62 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEC---------------------CCCCceeeEEEEEECCHHHHH
Confidence 4579999999999999999999987 899999999986 445789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+.... .-.++|+.|+|..+...
T Consensus 63 ~Ai~~ln--g~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 63 ETVKNLH--LTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHHHHHT--TCEETTEECEEEECSTT
T ss_pred HHHHHhC--CCEECCeEEEEEECCCC
Confidence 9998764 35789999999966544
No 28
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=1.4e-07 Score=88.03 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=69.4
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ...++++++|||+|.+.++|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a 78 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLD---------------------RRTGYLKGYTLVEYETYKEA 78 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTSSEEEEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEec---------------------CCCCceeeEEEEEECCHHHH
Confidence 34689999999999999999999988 799999999886 34578899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.... ...++|+.|+|..+
T Consensus 79 ~~A~~~l~--g~~~~g~~l~V~~a 100 (106)
T 1p27_B 79 QAAMEGLN--GQDLMGQPISVDWC 100 (106)
T ss_dssp HHHHHHHT--TCBSSSSBCEEEES
T ss_pred HHHHHHhc--CCEECCcEEEEEee
Confidence 99998653 25788999999844
No 29
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.62 E-value=3.6e-08 Score=89.78 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=65.0
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccc--cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVG--GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.+|+|+|+|..++.++|.++|+. .| .|..|+|..+ +..+++++||||+|.+.++|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~---------------------~~~g~~kG~afV~f~~~~~a~ 59 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFEN---------------------RANGQSKGFALVGVGSEASSK 59 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEEC---------------------TTTCCEEEEEEECC-CHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEec---------------------CCCCccCcEEEEEECCHHHHH
Confidence 47999999999999999999987 78 8999998876 445789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
.|+.... ...++|+.|+|..+..
T Consensus 60 ~Ai~~l~--g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 60 KLMDLLP--KRELHGQNPVVTPSNK 82 (90)
T ss_dssp HHHHHGG--GSCSSSCCCEECCC--
T ss_pred HHHHHcC--CCeeCCEEEEEEECCC
Confidence 9998664 3578999999994433
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.62 E-value=1.5e-07 Score=89.09 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=71.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|... ...+++++||||+|.+.++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a 70 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKD---------------------MATGKSKGYGFVSFFNKWDA 70 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEc---------------------CCCCCcceEEEEEECCHHHH
Confidence 35689999999999999999999996 899999999875 33578899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
..|+.... ...++|+.|+|..+...+
T Consensus 71 ~~A~~~l~--g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 71 ENAIQQMG--GQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp HHHHHHTT--TCEETTEECEEEESSCCC
T ss_pred HHHHHHhC--CCEECCEEEEEEEccCCC
Confidence 99998764 367899999999554443
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=9.5e-08 Score=88.79 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=71.7
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|... +..+++++||||+|.+.++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A 70 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKD---------------------KTTGQSKGFAFISFHRREDA 70 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEEC---------------------SSSCSEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeec---------------------CCCCceeeEEEEEECCHHHH
Confidence 35689999999999999999999987 799999999875 33578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
..|+.... ...++|+.|+|..+...+
T Consensus 71 ~~A~~~l~--g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 71 ARAIAGVS--GFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHHHHHTT--TCEETTEECEEEESSCCC
T ss_pred HHHHHHcC--CCeeCCcEEEEEECCCCC
Confidence 99999653 357899999999554443
No 32
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.62 E-value=3.6e-08 Score=86.24 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=63.5
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
+|+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+.++|..|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~a~ 58 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFD---------------------KTTNRHRGFGFVTFESEDIVEKVC 58 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBC---------------------SSSTTSCBEEEEECSCHHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCCcCcEEEEEECCHHHHHHHH
Confidence 4899999999999999999998 799988888765 335789999999999999999998
Q ss_pred HhhcccceeccCeeeeee
Q 048783 92 DAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 92 ~~a~~~~l~~~~~~Lkv~ 109 (1117)
.+ +...++|+.|+|.
T Consensus 59 ~~---~~~~~~g~~l~v~ 73 (75)
T 2mss_A 59 EI---HFHEINNKMVECK 73 (75)
T ss_dssp SS---SCCCSSSCCCEEE
T ss_pred HC---CCCEECCEEEEEE
Confidence 74 2367899999987
No 33
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.61 E-value=1.1e-07 Score=89.97 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=69.5
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|.++|+. .|.|..|+|... +..++++++|||+|.+.++|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~F~~~~~A 81 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMD---------------------SETGRSKGYGFITFSDSECA 81 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEE---------------------TTTTEEEEEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEc---------------------CCCCccceEEEEEECCHHHH
Confidence 35689999999999999999999977 899999999876 34578899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.... ...++|+.|+|+.+
T Consensus 82 ~~Ai~~l~--g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 82 KKALEQLN--GFELAGRPMKVGHV 103 (108)
T ss_dssp HHHHHHHT--TCCSSSSCCEEECS
T ss_pred HHHHHHcC--CCEECCEEEEEEEc
Confidence 99998653 36789999999943
No 34
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.61 E-value=1.5e-07 Score=85.91 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=68.9
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
+.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ + .++++++|||+|.++++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~ 69 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKD---------------------R-EGKPKSFGFVCFKHPES 69 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSTHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEEC---------------------C-CCCCceEEEEEECCHHH
Confidence 345689999999999999999999988 799999999886 2 26789999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.... ...++|+.|+|..+
T Consensus 70 a~~A~~~l~--g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 70 VSYAIALLN--GIRLYGRPINVSGP 92 (95)
T ss_dssp HHHHHHHHT--TCEETTEECEEECC
T ss_pred HHHHHHHhC--CCEECCCEEEEEEc
Confidence 999999653 25688999999843
No 35
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.61 E-value=1.3e-07 Score=89.55 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=68.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ...+++++||||+|.+.++|.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~---------------------~~tg~~kg~afV~f~~~~~A~ 81 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRD---------------------PLTKRSRGFGFVTFMDQAGVD 81 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCC---------------------TTTCCCTTCEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEEC---------------------CCCCCcCcEEEEEECCHHHHH
Confidence 4679999999999999999999987 899999999875 345789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.|+...+ ..++|+.|+|..+.
T Consensus 82 ~Ai~~~~---~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 82 KVLAQSR---HELDSKTIDPKVAF 102 (109)
T ss_dssp HHHHSSC---EEETTEEEEEEECC
T ss_pred HHHHHCC---CcCCCEEEEEEEcc
Confidence 9999753 78999999999443
No 36
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1e-07 Score=88.57 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=71.2
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|.++|+...|.|..|+|..+ . .+++++||||+|.+.++|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~a 64 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD---------------------Q-TGVSKGYGFVKFTDELEQ 64 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC---------------------T-TCCEEEEEEEEESCHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC---------------------C-CCCccceEEEEECCHHHH
Confidence 345789999999999999999999998999999999886 2 467999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
..|+..... ...++|+.|+|..+...
T Consensus 65 ~~A~~~l~g-~~~~~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 65 KRALTECQG-AVGLGSKPVRLSVAIPK 90 (104)
T ss_dssp HHHHHHTTT-CCSSSSSCCCCCBCCCC
T ss_pred HHHHHHccC-CcccCCEeEEEEEccCC
Confidence 999996532 23389999999955433
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.7e-07 Score=86.55 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=69.8
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|.++|+. .|.|..|+|... . .++++++|||+|.+.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~ 70 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTN---------------------R-AGKPKGLAYVEYENESQ 70 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEEC---------------------C-CCCEEeEEEEEECCHHH
Confidence 345689999999999999999999998 899999999885 2 46789999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.... ...++|+.|+|..+
T Consensus 71 a~~A~~~l~--g~~~~g~~l~v~~a 93 (100)
T 2do4_A 71 ASQAVMKMD--GMTIKENIIKVAIS 93 (100)
T ss_dssp HHHHHHHHT--TEESSSCEEEEEEC
T ss_pred HHHHHHHhC--CCEECCEEEEEEEC
Confidence 999997753 36789999999943
No 38
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.61 E-value=1.5e-07 Score=88.38 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=69.3
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...++++++|||+|.+.++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 80 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLD---------------------RRTGFSKGYALVEYETHKQ 80 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBC---------------------TTTSSBCSEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCCcceEEEEEECCHHH
Confidence 345689999999999999999999988 799999998765 3357889999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.... ...++|+.|+|..+
T Consensus 81 A~~Ai~~l~--g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 81 ALAAKEALN--GAEIMGQTIQVDWC 103 (110)
T ss_dssp HHHHHHHHT--TCEETTEECEEEES
T ss_pred HHHHHHHcC--CCEECCcEEEEEEc
Confidence 999999653 25779999999844
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=1.2e-07 Score=87.06 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=68.6
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|+|..+-. .+..++++++|||+|.+.++|..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~------------------~~gt~~~~g~afV~f~~~~~a~~ 65 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKN------------------KAGVLLSMGFGFVEYKKPEQAQK 65 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEEC------------------TTCCEEEEEEEEEEESSHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCC------------------CCCCcCcccEEEEEECCHHHHHH
Confidence 478999999999999999999986 89999999987600 00023789999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|+.... ...++|+.|+|..+...
T Consensus 66 A~~~l~--g~~~~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 66 ALKQLQ--GHTVDGHKLEVRISERA 88 (98)
T ss_dssp HHHHST--TCEETTEECEEECSSCS
T ss_pred HHHHhC--CCeeCCeEEEEEEccCC
Confidence 999653 25788999999954433
No 40
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=7.5e-08 Score=88.09 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=69.1
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEE-EEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRC-RLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..| +|..+ +..++++++|||+|.+.++|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~A~ 62 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRD---------------------PDTGNSKGYAFINFASFDASD 62 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCC---------------------TTTCSCCSEEEEEBSSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEc---------------------CCCCCcCeEEEEEECCHHHHH
Confidence 579999999999999999999998 7888777 77764 345789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.|+.... ...++|+.|+|..+...+
T Consensus 63 ~A~~~l~--g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 63 AAIEAMN--GQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp HHHHTTT--TCEETTEECEEEESCCCC
T ss_pred HHHHHcC--CCEECCEEEEEEEecccC
Confidence 9999653 256899999999654443
No 41
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.60 E-value=3.2e-08 Score=86.47 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=64.0
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 048783 12 QVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAM 91 (1117)
Q Consensus 12 ~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~ 91 (1117)
||+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.++++|..|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~Ai 58 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMD---------------------NKTNKRRGFCFITFKEEEPVKKIM 58 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCS---------------------CCCSSSCCCEEEECSSSHHHHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCCcCCEEEEEECCHHHHHHHH
Confidence 5899999999999999999998 799888888765 334689999999999999999999
Q ss_pred HhhcccceeccCeeeeeec
Q 048783 92 DAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 92 ~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.+- ...++|+.|+|..
T Consensus 59 ~~~---~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 59 EKK---YHNVGLSKCEIKV 74 (75)
T ss_dssp TTS---SCCBTTBCCCEEE
T ss_pred HhC---CCeECCEEEEEEE
Confidence 963 3568999999873
No 42
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1e-07 Score=90.29 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=68.0
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. +|.|..|+|..+ ...+++++||||+|.+.++|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a 80 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISD---------------------RNSRRSKGIAYVEFCEIQSV 80 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCS---------------------CCSSSCCCCEEEEESCGGGH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEec---------------------CCCCccCcEEEEEeCcHHHH
Confidence 35689999999999999999999987 899999999876 33478999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+ ... ...++|+.|+|..+
T Consensus 81 ~~A~-~l~--g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 81 PLAI-GLT--GQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHH-HHT--TEEETTEEEEEEEH
T ss_pred HHHH-HcC--CCEeCCeEEEEEec
Confidence 9999 432 36789999999843
No 43
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.60 E-value=1.6e-07 Score=92.00 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=73.0
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+...++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...+++++||||+|.+.+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~ 95 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCD---------------------RETRQSRGYGFVKFQSGS 95 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEE---------------------TTTTEEEEEEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEc---------------------CCCCCcceEEEEEECCHH
Confidence 4456789999999999999999999988 799999999886 335788999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
+|..|+.... ...++|+.|+|..+...
T Consensus 96 ~a~~A~~~l~--g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 96 SAQQAIAGLN--GFNILNKRLKVALAASG 122 (139)
T ss_dssp HHHHHHHHTT--TEECSSCEEEEEESSCC
T ss_pred HHHHHHHHhC--CCEECCeEEEEEECCCC
Confidence 9999999653 36789999999955444
No 44
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.60 E-value=8.4e-08 Score=86.06 Aligned_cols=77 Identities=13% Similarity=0.262 Sum_probs=66.3
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCC-ccceEEEEecChHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEK-VEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~afV~F~~~e~a~ 88 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ...++ ++++|||+|.+.++|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---------------------~~~~~~~~g~afV~f~~~~~a~ 61 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVE---------------------RMHPHLSKGYAYVEFENPDEAE 61 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEE---------------------TTEEEEECSEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeC---------------------CCCCCCCCcEEEEEEecHHHHH
Confidence 579999999999999999999987 899999999876 22223 8899999999999999
Q ss_pred HHHHhhcccceeccCeeeeeec
Q 048783 89 RAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.|+.... ...++|+.|+|+.
T Consensus 62 ~A~~~l~--g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 62 KALKHMD--GGQIDGQEITATA 81 (88)
T ss_dssp HHHHHHT--TCEETTEECEEEE
T ss_pred HHHHHcC--CCeECCeEEEEEE
Confidence 9999653 3678999999993
No 45
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1e-07 Score=90.12 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=70.5
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEE--------EEEEEecCCCCCCCCcccccccccccccCCCCCccceE
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVW--------RCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHA 77 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (1117)
.+.-.++|+|+|+|..++.++|+++|+. .|.|. .|+|..+ ...+++++||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~---------------------~~~g~~~g~a 68 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLD---------------------KETGKPKGDA 68 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBC---------------------TTTCSBCSEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEe---------------------CCCCCeeeEE
Confidence 4556789999999999999999999998 78877 5777664 3457899999
Q ss_pred EEEecChHHHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 78 FVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 78 fV~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
||+|.+.++|..|+.... ...++|+.|+|..+...
T Consensus 69 fV~f~~~~~A~~Ai~~l~--g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 69 TVSYEDPPTAKAAVEWFD--GKDFQGSKLKVSLARKK 103 (113)
T ss_dssp EEEBSSHHHHHHHHHHHT--TCEETTEECEEECSSCC
T ss_pred EEEECCHHHHHHHHHHcC--CCccCCCEEEEEECCCC
Confidence 999999999999999653 25688999999954443
No 46
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=6.1e-08 Score=86.82 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=66.5
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|..
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~ 62 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILD---------------------KTTNKCKGYGFVDFDSPSAAQK 62 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECC---------------------SSSCSCCSEEEEEESCHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCCcCcEEEEEECCHHHHHH
Confidence 579999999999999999999996 799999999875 3457899999999999999999
Q ss_pred HHHhhcccceeccCeeeeee
Q 048783 90 AMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|+.... ...++|+.||++
T Consensus 63 A~~~l~--g~~~~g~~~~~~ 80 (85)
T 1x4e_A 63 AVTALK--ASGVQAQMAKQS 80 (85)
T ss_dssp HHHHHH--HHTCCEESCCSS
T ss_pred HHHHhc--CCeEeeEEEeec
Confidence 999653 246888999887
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.59 E-value=1.8e-07 Score=87.19 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=71.8
Q ss_pred cccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 4 REKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 4 ~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
...+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~ 64 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKD---------------------RFTGMHKGCAFLTYCE 64 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCC---------------------SSSCSCCSEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEec---------------------CCCCCcceEEEEEECC
Confidence 344556789999999999999999999998 799999988775 3357899999999999
Q ss_pred hHHHHHHHHhhcccceec--cCeeeeeecCCCC
Q 048783 84 STYITRAMDAAEHMELFL--NGRALKVSLGPEN 114 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~--~~~~Lkv~~~~~~ 114 (1117)
.++|..|+..... ..++ +|+.|+|..+...
T Consensus 65 ~~~A~~A~~~l~g-~~~~~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 65 RESALKAQSALHE-QKTLPGMNRPIQVKPADSE 96 (106)
T ss_dssp HHHHHHHHHHHTT-TCCCTTCSSCCEEEECCCC
T ss_pred HHHHHHHHHHhcC-CcccCCCCceEEEEECCcc
Confidence 9999999986543 2333 7899999955433
No 48
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=2.8e-07 Score=85.55 Aligned_cols=85 Identities=18% Similarity=0.273 Sum_probs=71.2
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
+...-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ . .+++++|||+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~--~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFN---------------------E--RGSKGFGFVTFENS 65 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECC---------------------T--TTTCCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------C--CCCcEEEEEEECCH
Confidence 34456789999999999999999999987 899999999875 1 24889999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
++|..|+.... ...++|+.|+|..+...+
T Consensus 66 ~~a~~A~~~l~--g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 66 ADADRAREKLH--GTVVEGRKIEVNNATARV 94 (103)
T ss_dssp HHHHHHHHHHT--TCEETTEECEEEECCSSC
T ss_pred HHHHHHHHHhC--CCEECCEEEEEEEcccCC
Confidence 99999998653 356899999999554443
No 49
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.59 E-value=1e-07 Score=88.00 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=68.6
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEE--------EEEEecCCCCCCCCcccccccccccccCCCCCccceEE
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWR--------CRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAF 78 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af 78 (1117)
..-.++|+|+|+|..++.++|.++|+. .|.|.. |+|..+ +..++++++||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~---------------------~~~g~~~G~af 67 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTD---------------------RETGKLKGEAT 67 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEEC---------------------TTTCSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEec---------------------CCCCCeeeEEE
Confidence 345789999999999999999999997 898888 888875 34578999999
Q ss_pred EEecChHHHHHHHHhhcccceeccCeeeeeec
Q 048783 79 VHFATSTYITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 79 V~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|+|.+.++|..|+..... ..++|+.|+|..
T Consensus 68 V~f~~~~~a~~Ai~~l~g--~~~~g~~l~V~~ 97 (99)
T 2la6_A 68 VSFDDPPSAKAAIDWFDG--KEFSGNPIKVSF 97 (99)
T ss_dssp EEBSSHHHHHHHHHHHTT--CBSSSSBCEEEE
T ss_pred EEECCHHHHHHHHHHhCC--CEeCCcEEEEEe
Confidence 999999999999986532 578899999974
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=1.8e-07 Score=86.90 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=71.6
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
..+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ .+++++||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----------------------~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMME-----------------------GGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEEC-----------------------SSSEEEEEEEEESSH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC-----------------------CCCcCEEEEEEECCH
Confidence 34556789999999999999999999996 899999999874 367899999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
++|..|+.... ...++|+.|+|..+...
T Consensus 66 ~~A~~A~~~l~--g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 66 EEATKAVTEMN--GRIVATKPLYVALAQRK 93 (103)
T ss_dssp HHHHHHHHHHT--TCBSSSSBCEEEECSSC
T ss_pred HHHHHHHHHhC--CCEeCCcEEEEEEeccc
Confidence 99999999653 25679999999955443
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=2.5e-07 Score=86.89 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=67.6
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|+.. .+++++|||+|.+.++|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~------------------------~~~~g~afV~f~~~~~A 74 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR------------------------RGGPPFAFVEFEDPRDA 74 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS------------------------SSSSCCEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC------------------------CCCCcEEEEEECCHHHH
Confidence 35689999999999999999999998 899999999764 45889999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
..|+..... ..++|+.|+|..+.
T Consensus 75 ~~A~~~l~g--~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 75 EDAVYGRDG--YDYDGYRLRVEFPR 97 (109)
T ss_dssp HHHHHHHTT--CEETTEECEEECCC
T ss_pred HHHHHHcCC--CEECCeEEEEEEcc
Confidence 999976642 57899999999443
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.58 E-value=1.5e-07 Score=89.24 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=70.3
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a~ 81 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFID---------------------KQTNLSKCFGFVSYDNPVSAQ 81 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEEC---------------------SSSCSEEEEEEEECSSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------CCCCCcCccEEEEECCHHHHH
Confidence 4579999999999999999999996 899999999886 335789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+.... ...++|+.|+|..+...
T Consensus 82 ~A~~~l~--g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 82 AAIQSMN--GFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp HHHHHHT--TCEETTEECEEECCCCS
T ss_pred HHHHHcC--CCEECCEEEEEEEcCCC
Confidence 9997763 36789999999954433
No 53
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.2e-07 Score=87.90 Aligned_cols=85 Identities=19% Similarity=0.272 Sum_probs=71.3
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~ 65 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKD---------------------RETQRSRGFGFVTFENID 65 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCC---------------------SSSCSCCSEEEEECSSHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeC---------------------CCCCCcccEEEEEECCHH
Confidence 3445689999999999999999999998 799999999875 335679999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
+|..|+.... ...++|+.|+|..+...
T Consensus 66 ~A~~A~~~l~--g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 66 DAKDAMMAMN--GKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp HHHHHHHHHT--TCCTTSCCCEEEEEECC
T ss_pred HHHHHHHHhC--CCEECCeEEEEEECCCC
Confidence 9999997653 25689999999955443
No 54
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1e-07 Score=90.64 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=69.1
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.++|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a~ 83 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRD---------------------PASKRSRGFGFVTFSSMAEVD 83 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECC---------------------TTTSSCCSEEEEECSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEEC---------------------CCCCCcCceEEEEeCCHHHHH
Confidence 4589999999999999999999976 899999999876 345789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.|+.+ +...++|+.|+|..+.
T Consensus 84 ~Ai~~---~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 84 AAMAA---RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTS---CSEEETTEEEEEECCS
T ss_pred HHHHh---CCcEECCEEEEEEECC
Confidence 99988 2477899999999443
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=3.5e-07 Score=84.92 Aligned_cols=81 Identities=21% Similarity=0.367 Sum_probs=68.7
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
+.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ...+++||||+|.+.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----------------------~~~~~g~afV~f~~~~~ 67 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITE-----------------------HTSNDPYCFVEFYEHRD 67 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECC-----------------------CCSSCCEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEec-----------------------CCCCCCEEEEEECCHHH
Confidence 446789999999999999999999987 899999999875 13368999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
|..|+.... ...++|+.|+|..+..
T Consensus 68 a~~A~~~l~--g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 68 AAAALAAMN--GRKILGKEVKVNWATT 92 (103)
T ss_dssp HHHHHHHHT--TEEETTEEEEEEECCC
T ss_pred HHHHHHHhC--CCCcCCCeEEEEECCC
Confidence 999999653 3568899999995443
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=3.2e-07 Score=85.16 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=69.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +..+++++||||+|.+.++|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a 70 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKD---------------------LKTGHSKGFGFVRFTEYETQ 70 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEEC---------------------SSSCSEEEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCCccceEEEEECCHHHH
Confidence 34678999999999999999999987 899999999886 44578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
..|+.. + ..++|+.|+|..+...
T Consensus 71 ~~A~~~-~---~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 71 VKVMSQ-R---HMIDGRWCDCKLPNSK 93 (103)
T ss_dssp HHHHHS-C---EEETTEEEEEECCCTT
T ss_pred HHHHHc-C---CeeCCeEEEEEecCCC
Confidence 999983 2 4789999999954433
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.5e-07 Score=87.21 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=70.9
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +..++++++|||+|.+.++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 66 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLD---------------------YETEKHRGFAFVEFELAED 66 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCC---------------------SSSCCCSSEEEECCSSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEec---------------------CCCCCcceEEEEEECCHHH
Confidence 345689999999999999999999988 899988888765 3457899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|..|+.... ...++|+.|+|..+...
T Consensus 67 A~~A~~~l~--g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 67 AAAAIDNMN--ESELFGRTIRVNLAKPM 92 (102)
T ss_dssp HHHHHHHHT--TEEETTEEEEEEECCCC
T ss_pred HHHHHHHhC--CCEECCcEEEEEeCCCC
Confidence 999998653 36789999999955443
No 58
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.57 E-value=1.9e-07 Score=88.92 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=68.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~A 95 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFID---------------------KQTSLSKCFGFVSFDNPDSA 95 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCC---------------------SSSSCCCCEEEEEEESSHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeC---------------------CCCCCcCcEEEEEECCHHHH
Confidence 35689999999999999999999997 899999999875 33578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeec
Q 048783 88 TRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
..|+.... ...++|+.|+|..
T Consensus 96 ~~A~~~l~--g~~~~g~~l~V~~ 116 (118)
T 2khc_A 96 QVAIKAMN--GFQVGTKRLKVQL 116 (118)
T ss_dssp HHHHHHCC--CCEETTEECCEEE
T ss_pred HHHHHHcC--CCEECCEEEEEEe
Confidence 99999753 3678999999973
No 59
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.57 E-value=1e-07 Score=88.81 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=68.6
Q ss_pred ceeeEEEEeCCCc------cccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEe
Q 048783 8 SVDTQVSVGGFDR------DIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHF 81 (1117)
Q Consensus 8 ~~~~~v~v~gf~~------~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F 81 (1117)
...++|.|+|+|. .++.++|.++|+. .|.|..|+|..+ +..+++++||||+|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d---------------------~~tg~~kG~afV~f 61 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPID---------------------EATGKTKGFLFVEC 61 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEE---------------------TTTTEECSEEEEEE
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEc---------------------CCCCccceEEEEEE
Confidence 3468999999999 9999999999987 899999999886 44578999999999
Q ss_pred cChHHHHHHHHhhcccceeccC-eeeeeecC
Q 048783 82 ATSTYITRAMDAAEHMELFLNG-RALKVSLG 111 (1117)
Q Consensus 82 ~~~e~a~~a~~~a~~~~l~~~~-~~Lkv~~~ 111 (1117)
.++++|..|+.... ...++| +.|+|..+
T Consensus 62 ~~~~~A~~Ai~~ln--g~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 62 GSMNDAKKIIKSFH--GKRLDLKHRLFLYTM 90 (100)
T ss_dssp SSHHHHHHHHHHHT--TCBSSSSCBCEEEES
T ss_pred CCHHHHHHHHHHhC--CcccCCCeEEEEEEC
Confidence 99999999998653 246676 99999843
No 60
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=9.5e-08 Score=88.66 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=70.0
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|... +..+++++||||+|.+.++|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~a 63 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYD---------------------RETGKPKGYGFCEYQDQETA 63 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEE---------------------TTTTEEEEEEEEECSCHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeC---------------------CCCCccceEEEEEECCHHHH
Confidence 34589999999999999999999997 899999999875 33578899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
..|+.... ...++|+.|+|..+..
T Consensus 64 ~~A~~~l~--g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 64 LSAMRNLN--GREFSGRALRVDNAAS 87 (104)
T ss_dssp HHHHHHSS--SBSCSSSCBEEEETTC
T ss_pred HHHHHHhC--CCeeCCcEEEEEeCCC
Confidence 99998653 3677999999995443
No 61
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.56 E-value=3.5e-07 Score=85.09 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=69.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|.++|+. .|.|..|+|... + .+++++||||+|.+.++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~A 69 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRG---------------------P-DGSSKGCAFVKFSSHTEA 69 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------S-SSCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C-CCCcCcEEEEEeCCHHHH
Confidence 45789999999999999999999997 899999999885 2 467899999999999999
Q ss_pred HHHHHhhcccceeccC--eeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLNG--RALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~--~~Lkv~~~~~~~ 115 (1117)
..|+.... +..+.+| +.|+|..+...+
T Consensus 70 ~~Ai~~l~-g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 70 QAAIHALH-GSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHHHHHHS-SCCCCTTCSSCCEEEESCSSC
T ss_pred HHHHHHHc-CCccCCCCCccEEEEECccCc
Confidence 99998653 2345554 999999554443
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.56 E-value=2.4e-07 Score=88.68 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=69.5
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ . .++++++|||+|.+.++|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~F~~~~~A~ 62 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKD---------------------R-TSKSRGFAFITFENPADAK 62 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECS---------------------T-TTTCCCEEEEECSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEEC---------------------C-CCCcccEEEEEECCHHHHH
Confidence 3579999999999999999999998 799999999875 2 4789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+.... ...++|+.|+|..+...
T Consensus 63 ~Ai~~l~--g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 63 NAAKDMN--GKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp HHHHHCS--SCBCSSSBCEEEECCCS
T ss_pred HHHHHhC--CCEECCEEEEEEECCCC
Confidence 9998653 35689999999865443
No 63
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.56 E-value=3.2e-07 Score=93.49 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=78.3
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +..+++++||||+|.+.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~ 67 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRD---------------------PNTKRSRGFGFVTYATVEE 67 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEc---------------------CCCCCccceEEEEeCCHHH
Confidence 345789999999999999999999997 799999999886 3457899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeee
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
|..|+.+- ...++|+.|+|..+..... . .+ ..-....-+|.||.+-
T Consensus 68 A~~A~~~~---~~~~~g~~l~v~~~~~~~~--~-~~---~~~~~~~~~l~V~nLp 113 (196)
T 1l3k_A 68 VDAAMNAR---PHKVDGRVVEPKRAVSRED--S-QR---PGAHLTVKKIFVGGIK 113 (196)
T ss_dssp HHHHHHTC---SCEETTEECEEEECCC-----------------CCSEEEEECCT
T ss_pred HHHHHhcC---CCEECCEEeeeecccCccc--c-cc---cccCCCcceEEEeCCC
Confidence 99999873 3678999999985544331 1 11 1122344578888763
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=2.6e-07 Score=86.11 Aligned_cols=81 Identities=14% Similarity=0.268 Sum_probs=67.5
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCC-CCccceEEEEecChHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDY-EKVEPHAFVHFATSTY 86 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~afV~F~~~e~ 86 (1117)
.-.++|+|+|+|..++.++|+++|+.. | |..|+|... +.. +++++||||+|.+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-i~~v~i~~~---------------------~~~~g~~~g~afV~f~~~~~ 69 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPRE---------------------PSNPERLKGFGYAEFEDLDS 69 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS-C-EEEEECCBC---------------------SSCTTSBCSCEEEEESSHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC-C-ceEEEEecC---------------------CCCCCCcCeEEEEEECCHHH
Confidence 356899999999999999999999984 8 999998875 333 6889999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|..|+ ... ...++|+.|+|..+...
T Consensus 70 a~~A~-~l~--g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 70 LLSAL-SLN--EESLGNKRIRVDVADQA 94 (104)
T ss_dssp HHHHH-GGG--TCEETTEECEEEECCCC
T ss_pred HHHHH-hcC--CCEeCCcEEEEEEccCC
Confidence 99999 332 35789999999954433
No 65
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.55 E-value=2.6e-07 Score=89.95 Aligned_cols=80 Identities=24% Similarity=0.327 Sum_probs=68.9
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. .|.|..++|..+ +..++++++|||+|.+.++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 117 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLD---------------------YETEKHRGFAFVEFELAED 117 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCC---------------------TTTCCCCSEEEEEESCHHH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeec---------------------CCCCCcCcEEEEEECCHHH
Confidence 345789999999999999999999987 799999988765 3457899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeec
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|..|+.... ...++|+.|+|..
T Consensus 118 a~~A~~~l~--g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 118 AAAAIDNMN--ESELFGRTIRVNL 139 (140)
T ss_dssp HHHHHHHST--EEEETTEEEEEEC
T ss_pred HHHHHHHhC--CCEECCEEEEEEe
Confidence 999998653 3678999999973
No 66
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.54 E-value=1.4e-07 Score=87.57 Aligned_cols=78 Identities=18% Similarity=0.342 Sum_probs=68.3
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ . .++++++|||+|.+.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~ 61 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITD---------------------R-TGVSKGYGFVSFYNDV 61 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEEC---------------------C-CCCccceEEEEECCHH
Confidence 4456789999999999999999999987 799999999986 2 4689999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeec
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
+|..|+. +...++|+.|+|..
T Consensus 62 ~a~~Ai~----~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 62 DVQKIVE----SQINFHGKKLKLGP 82 (102)
T ss_dssp CHHHHTT----CCCEETTEECEEEE
T ss_pred HHHHHHh----CCCeECCEEEEEEE
Confidence 9999998 24688999999763
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.54 E-value=3e-07 Score=85.73 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=72.1
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|... + ...+++++||||+|.+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~--~------------------~~~~~~~g~afV~f~~~~ 69 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKK--M------------------TGTGAHRGFGFVDFITKQ 69 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCC--C------------------SSSCSSCSEEEEEESSHH
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecC--C------------------CCCCCcCceEEEEECCHH
Confidence 4556789999999999999999999988 899999988653 0 124678999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
+|..|+....+ ...++|+.|+|..+...+
T Consensus 70 ~a~~A~~~l~~-~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 70 DAKKAFNALCH-STHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHHHHHHHT-CCBSSSCBCEEEECCCCC
T ss_pred HHHHHHHHhcc-CCeECCCEEEEEeCCCCC
Confidence 99999997621 267889999999655443
No 68
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.53 E-value=5.9e-08 Score=87.87 Aligned_cols=80 Identities=15% Similarity=0.297 Sum_probs=66.4
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
++|+|+|+|..++.++|+++|+. .|.|..|++..+ ...++++++|||+|.+.+ |..|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~-a~~a 58 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYD---------------------RETKKPKGFGFVEMQEES-VSEA 58 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCC---------------------SSSCCCCEEEEEEECTTH-HHHH
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEc---------------------CCCCCcceEEEEEECCHH-HHHH
Confidence 68999999999999999999998 799999998875 334789999999999999 9999
Q ss_pred HHhhcccceeccCeeeeeecCCCCC
Q 048783 91 MDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
+.... ...++|+.|+|..+...+
T Consensus 59 ~~~l~--g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 59 IAKLD--NTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp HHTSC--SSCCSSSSCSEEEC----
T ss_pred HHHhC--CCEECCeEEEEEEcCCCC
Confidence 98764 356899999999654443
No 69
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=2.7e-07 Score=86.47 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=69.2
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhcccc-EEEEEEE-ecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGG-VWRCRLK-TSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~-v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.-.++|+|+|+|..++.++|.++|+. .|. |..|+|. .. ...+++++||||+|.+.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~---------------------~~~g~~~g~afV~f~~~~ 63 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASA---------------------ADKMKNRGFAFVEYESHR 63 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSS---------------------CTTTTTCCEEEEEESSHH
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccC---------------------CCCCCcCcEEEEEecCHH
Confidence 34689999999999999999999998 676 8888876 32 224679999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
+|..|+....++...++|+.|+|..+..
T Consensus 64 ~A~~A~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 64 AAAMARRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp HHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred HHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence 9999999764334788999999985443
No 70
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=3.2e-07 Score=86.43 Aligned_cols=82 Identities=9% Similarity=0.122 Sum_probs=69.0
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++|+|+|+|..++.++|+++|+. .|.|..|++.. .+++|||+|++.+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~---------------------------~kg~aFVef~~~~ 62 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLK---------------------------GKNQAFLELATEE 62 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEET---------------------------TTTEEEEEESSHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEC---------------------------CCCEEEEEECCHH
Confidence 3445689999999999999999999998 79999887763 2789999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
+|..|+.....+...++|++|+|..+....
T Consensus 63 ~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 63 AAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred HHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 999999875434578999999999665554
No 71
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.53 E-value=2.7e-07 Score=88.78 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=70.0
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|... ...++++++|||+|.+.++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 76 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLD---------------------RRTGYLKGYTLVEYETYKE 76 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBC---------------------TTTSSBCSCEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCccceEEEEEECCHHH
Confidence 345689999999999999999999987 899999998775 3357889999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|..|+.... ...++|+.|+|..+.
T Consensus 77 a~~A~~~l~--g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 77 AQAAMEGLN--GQDLMGQPISVDWCF 100 (126)
T ss_dssp HHHHHHHHT--TCBSSSSBCEEEESE
T ss_pred HHHHHHHhC--CCeeCCeEEEEEEec
Confidence 999998653 356899999999553
No 72
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.52 E-value=3.7e-07 Score=91.10 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=70.3
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
...++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ...++++++|||+|.+.++|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~a 125 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPRD---------------------RYTKESRGFAFVRFHDKRDA 125 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEECCCC---------------------SSCTTSCCEEEEEESBHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeec---------------------CCCCccceEEEEEECCHHHH
Confidence 45789999999999999999999976 899999998775 33578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
..|+.... ...++|++|+|..+..
T Consensus 126 ~~A~~~l~--g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 126 EDAMDAMD--GAVLDGRELRVQMARY 149 (158)
T ss_dssp HHHHHHST--TEESSSSEEEEEEECC
T ss_pred HHHHHHhC--CCEECCeEEEEEECCC
Confidence 99998653 2578999999995443
No 73
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.52 E-value=3.6e-07 Score=85.33 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=68.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
...++|+|+|+|..++.++|+++|+. .|.|..|+|... . .++++++|||+|.+.++|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~a 83 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYD---------------------R-SGRSLGTADVHFERKADA 83 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C-CCCcceEEEEEECCHHHH
Confidence 45789999999999999999999996 899999999986 2 467899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.... ...++|+.|+|..+
T Consensus 84 ~~A~~~l~--g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 84 LKAMKQYN--GVPLDGRPMNIQLV 105 (107)
T ss_dssp HHHHHHHT--TCEETTEECEEEEE
T ss_pred HHHHHHhC--CCEeCCcEEEEEEe
Confidence 99999653 25679999999843
No 74
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.2e-07 Score=90.24 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=68.6
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccE-EEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGV-WRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
..-.++|+|+|+|..++.++|++||+.. |.| ..|+|..+ . .+++++||||+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d---------------------~-~g~~~G~afV~F~~~~ 68 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVD---------------------N-NGQGLGQALVQFKNED 68 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCC---------------------T-TSSCSSCEEEECSSHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEEC---------------------C-CCCcceEEEEEECCHH
Confidence 4456899999999999999999999984 988 77888775 2 5789999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+|..|+.+ +...++|++|+|..+.
T Consensus 69 ~a~~Al~~---~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 69 DARKSERL---HRKKLNGREAFVHVVT 92 (114)
T ss_dssp HHHHHGGG---CSEEETTEEEEEEEEC
T ss_pred HHHHHHHh---CCCccCCeEEEEEECC
Confidence 99999887 3478999999998543
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=2.4e-07 Score=85.25 Aligned_cols=82 Identities=11% Similarity=0.168 Sum_probs=69.2
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEE-EEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVW-RCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
.....++|+|+|+|..++.++|+++|+. .|.|. .|+|..+ +..+++++||||+|.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~---------------------~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRN---------------------RLTGIPAGYCFVEFADL 62 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEEC---------------------SSSCCEEEEEEEECSCH
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeec---------------------CCCCCcCCEEEEEeCCH
Confidence 4456789999999999999999999998 89888 9999876 33578999999999999
Q ss_pred HHHHHHHHhhcccceeccCee----eeeecC
Q 048783 85 TYITRAMDAAEHMELFLNGRA----LKVSLG 111 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~----Lkv~~~ 111 (1117)
++|..|+.... ...++|+. |+|..+
T Consensus 63 ~~a~~A~~~l~--g~~~~g~~~~~~l~v~~a 91 (99)
T 2div_A 63 ATAEKCLHKIN--GKPLPGATPAKRFKLNYA 91 (99)
T ss_dssp HHHHHHHHTTT--TSEESSCSSCEECCEEET
T ss_pred HHHHHHHHHHc--CCccCCCCcceeEEEeec
Confidence 99999998653 25677888 888843
No 76
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.51 E-value=1e-07 Score=87.04 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=65.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.+||+++|+. .|.|..|++... +..++++++|||+|.+.+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~---------------------~~~g~~~g~afV~f~~~~~a 70 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKY---------------------NEKGMPTGEAMVAFESRDEA 70 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEE---------------------CTTSCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEe---------------------CCCCCEeeEEEEEECCHHHH
Confidence 34589999999999999999999987 787766666654 34578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.... ...++|+.|+|..+
T Consensus 71 ~~Ai~~l~--g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 71 TAAVIDLN--DRPIGSRKVKLSGP 92 (95)
T ss_dssp HHHHHHHT--TCEETTEECEEECC
T ss_pred HHHHHHhC--CCeECCcEEEEEec
Confidence 99998653 36789999999843
No 77
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.51 E-value=1.6e-07 Score=83.68 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=61.6
Q ss_pred eEEEEeCCCccc------cHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 11 TQVSVGGFDRDI------KAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 11 ~~v~v~gf~~~~------~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
++|+|+|+|..+ +.++|.++|+. .|.|..|+|... .++++++|||+|.+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~~~-----------------------~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEE-----------------------DGKTKGYIFLEYASP 57 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECCCB-----------------------TTBCCCEEEEEESSH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEecCC-----------------------CCcEeEEEEEEECCH
Confidence 689999999999 67999999987 899988887522 368999999999999
Q ss_pred HHHHHHHHhhcccceeccCe-eeeee
Q 048783 85 TYITRAMDAAEHMELFLNGR-ALKVS 109 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~-~Lkv~ 109 (1117)
++|..|+.... ...++|+ .|+|+
T Consensus 58 ~~A~~Ai~~ln--g~~~~g~~~l~V~ 81 (81)
T 2krb_A 58 AHAVDAVKNAD--GYKLDKQHTFRVN 81 (81)
T ss_dssp HHHHHHHTTSS--SCCCSSSSCCCCC
T ss_pred HHHHHHHHHhc--CcccCCceeEEeC
Confidence 99999999653 2567787 88875
No 78
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.51 E-value=4e-07 Score=87.58 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=71.1
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ . .++++++|||+|.+.++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~A 89 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYD---------------------R-SGRSLGTADVHFERRADA 89 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECC---------------------S-SSSCCSEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEC---------------------C-CCCEeeEEEEEECCHHHH
Confidence 35689999999999999999999988 899999999875 2 467999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
..|+.... ...++|+.|+|..+....
T Consensus 90 ~~Ai~~l~--g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 90 LKAMKQYK--GVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp HHHHHHHT--TEESSSCEEEEEEECCTT
T ss_pred HHHHHHcC--CCEECCcEEEEEEeCCCC
Confidence 99999653 357899999999655544
No 79
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.50 E-value=2.2e-07 Score=85.10 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=67.6
Q ss_pred CCccccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEE
Q 048783 1 PEEREKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVH 80 (1117)
Q Consensus 1 ~~~~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~ 80 (1117)
|....++.-.++|+|+|+|..++.++|+++|+. +|.|..+ +. .++++++|||+
T Consensus 7 p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~--~~------------------------~~~~~g~afV~ 59 (96)
T 1fjc_A 7 PCTSKKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV--SQ------------------------DGKSKGIAYIE 59 (96)
T ss_dssp TTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE--EE------------------------TTEEEEEEEEE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe--CC------------------------CCCcceEEEEE
Confidence 344556667899999999999999999999998 5776555 22 26789999999
Q ss_pred ecChHHHHHHHHhhcccceeccCeeeeeecC
Q 048783 81 FATSTYITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 81 F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|.+.++|..|+.... ...++|+.|+|..+
T Consensus 60 f~~~~~a~~A~~~l~--g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 60 FKSEADAEKNLEEKQ--GAEIDGRSVSLYYT 88 (96)
T ss_dssp ESSHHHHHHHHHHTT--EEEETTEEEEEEEC
T ss_pred ECCHHHHHHHHHHhC--CCEECCeEEEEEEc
Confidence 999999999999653 36789999999954
No 80
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.50 E-value=1.4e-07 Score=87.54 Aligned_cols=79 Identities=15% Similarity=0.292 Sum_probs=64.8
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccC-CCCCccceEEEEecChH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTD-DYEKVEPHAFVHFATST 85 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~afV~F~~~e 85 (1117)
....++|+|+|+|..++.++|+++|+. .| |..|+|..+ . ..++++++|||+|.+.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~---------------------~~~~g~~~g~afV~f~~~~ 72 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPRE---------------------PSNPERLKGFGYAEFEDLD 72 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCC---------------------TTTTCCCCSCEEEEECCHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEec---------------------CCcCCccCeEEEEEECCHH
Confidence 346789999999999999999999998 58 999998765 2 25789999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
+|..|+.+- ...++|+.|+|..+
T Consensus 73 ~a~~Ai~l~---g~~~~g~~l~V~~a 95 (100)
T 2j76_E 73 SLLSALSLN---EESLGNRRIRVDVA 95 (100)
T ss_dssp HHHHHHHTT---TCCBTTBCCCCEEC
T ss_pred HHHHHHhcC---CCEECCeEEEEEec
Confidence 999999332 35789999999844
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.50 E-value=3.5e-07 Score=92.47 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=68.5
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccc--cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVG--GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.++|+|+|+|..++.++|+++|+. +| .|..|+|..+ ...+++++||||+|.+.++|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d---------------------~~tg~skGfaFV~f~~~~~A 112 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAEN---------------------RANGQSKGYAEVVVASENSV 112 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEEC---------------------TTTCCEEEEEEEEESCHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEec---------------------CCCCccceEEEEEECCHHHH
Confidence 479999999999999999999976 89 8999999876 44678999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.... ...++|+.|+|..+
T Consensus 113 ~~Ai~~ln--g~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 113 HKLLELLP--GKVLNGEKVDVRPA 134 (156)
T ss_dssp HHHHHHST--TCEETTEECEEEEC
T ss_pred HHHHHHcC--CCEECCeEeEEEEc
Confidence 99999864 36789999999944
No 82
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=2.5e-07 Score=87.44 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=68.7
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ..+++++|||+|.+.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-----------------------~~~~kg~afV~f~~~~ 80 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFN-----------------------ERGSKGFGFVTFENSA 80 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCB-----------------------TTBCTTEEEEECCCSH
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEEC-----------------------CCCCceEEEEEECCHH
Confidence 4456789999999999999999999987 799998988875 1358899999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+|..|+.... ...++|+.|+|..+.
T Consensus 81 ~A~~Ai~~l~--g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 81 DADRAREKLH--GTVVEGRKIEVNNAT 105 (109)
T ss_dssp HHHHHHHHHT--TCEETTEECEEEECC
T ss_pred HHHHHHHHcC--CCEECCEEEEEEECC
Confidence 9999999653 256899999998543
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.49 E-value=3.4e-07 Score=85.87 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=66.8
Q ss_pred cCceeeEEEEeCCCccc------cHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEE
Q 048783 6 KTSVDTQVSVGGFDRDI------KAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFV 79 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~------~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV 79 (1117)
.+...++|+|+|+|..+ +.++|.++|+. .|.|..|+|... .+++++||||
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~~~-----------------------~g~~~G~afV 66 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEE-----------------------DGKTKGYIFL 66 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECCCB-----------------------TTBSCCEEEE
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEeeCC-----------------------CCCeeeEEEE
Confidence 34457899999999999 78999999987 899999887622 3689999999
Q ss_pred EecChHHHHHHHHhhcccceeccCe-eeeeecC
Q 048783 80 HFATSTYITRAMDAAEHMELFLNGR-ALKVSLG 111 (1117)
Q Consensus 80 ~F~~~e~a~~a~~~a~~~~l~~~~~-~Lkv~~~ 111 (1117)
+|.+.++|..|+.... ...++|+ .|+|..+
T Consensus 67 ~f~~~~~A~~Ai~~l~--g~~~~g~~~l~V~~a 97 (105)
T 2nlw_A 67 EYASPAHAVDAVKNAD--GYKLDKQHTFRVNLF 97 (105)
T ss_dssp EECSSSHHHHHHHHCS--SEECSTTCEEEEECS
T ss_pred EECCHHHHHHHHHHhC--CcccCCCceEEEEEc
Confidence 9999999999999653 2567887 9999944
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.49 E-value=3e-07 Score=89.95 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=68.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...++++++|||+|.+.++|.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~~G~afV~F~~~~~A~ 102 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYD---------------------QQSRRSRGFAFVYFENVDDAK 102 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECC---------------------SSSSCCCCEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCccceEEEEEECCHHHHH
Confidence 4678999999999999999999987 899999999876 345789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeec
Q 048783 89 RAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.|+.... ...++|+.|+|..
T Consensus 103 ~Ai~~ln--g~~i~g~~l~V~~ 122 (129)
T 2kxn_B 103 EAKERAN--GMELDGRRIRVDF 122 (129)
T ss_dssp HHHHHHT--TCCSSSSCCEESC
T ss_pred HHHHHhC--CCEECCEEEEEEE
Confidence 9999653 3678999999983
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=5.8e-07 Score=82.81 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=65.3
Q ss_pred eeeEEEEeCCCccccHHHHH----HHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 9 VDTQVSVGGFDRDIKAVDLV----KYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~----~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
-.++|+|+|+|..++.++|+ ++|+. .|.|..|+|..+ .. . ++||||+|.+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~---------------------~~--~-rg~afV~f~~~ 62 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPH---------------------TD--Y-QLKAVVQMENL 62 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSC---------------------CS--T-TCCEEEEESSH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeC---------------------CC--C-CeEEEEEECCH
Confidence 35789999999999999999 88876 799999999875 21 1 78999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
++|..|+.... ...++|+.|+|..+.
T Consensus 63 ~~A~~Ai~~l~--g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 63 QDAIGAVNSLH--RYKIGSKKILVSLAT 88 (96)
T ss_dssp HHHHHHHHHHT--TEEETTEEEEEEECC
T ss_pred HHHHHHHHHhC--CCEECCeEEEEEEcC
Confidence 99999999664 367899999999553
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=3.8e-07 Score=86.82 Aligned_cols=79 Identities=10% Similarity=0.169 Sum_probs=67.1
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.+||.++|+. .|.|..|+|..+ +++|||+|++.++|.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~---------------------------kGfaFVeF~~~~~A~ 66 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG---------------------------KNQAFIEMNTEEAAN 66 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT---------------------------TTEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC---------------------------CCEEEEEECCHHHHH
Confidence 4588999999999999999999998 899999998742 689999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.|+.....+...++|++|+|..+...+
T Consensus 67 ~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 67 TMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred HHHHHhccCCceECCEEEEEEEcCCCC
Confidence 999965433467899999999554444
No 87
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=3.3e-07 Score=85.85 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=67.9
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEE-EEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWR-CRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
.-.++|+|+|+|..++.+||++||+. +|.|.. ++|..+ ..++++++|||+|.+.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~----------------------~~g~~~G~afV~F~~~~~ 69 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVD----------------------FQGRSTGEAFVQFASQEI 69 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBC----------------------SSSCBCSEEEEEESSHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEEC----------------------CCCCcceEEEEEECCHHH
Confidence 45689999999999999999999998 788765 666542 347899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
|..|+.. . ...++|++|+|..+....
T Consensus 70 a~~A~~~-~--~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 70 AEKALKK-H--KERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp HHHHHTT-T--TCCSSSSCCEEEEECTTT
T ss_pred HHHHHHh-C--cchhCCcEEEEEECCHHH
Confidence 9999997 2 367899999998554443
No 88
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.48 E-value=9.1e-08 Score=90.09 Aligned_cols=81 Identities=10% Similarity=0.155 Sum_probs=67.5
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhcccc---EEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEec
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGG---VWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFA 82 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~ 82 (1117)
...-..+|+|+|+|..++.++|++||+. +|. |..|+|..+ .. ++++++|||+|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~---------------------~~-g~~~G~afV~F~ 63 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLN---------------------RD-GKRRGDALIEME 63 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCC---------------------TT-STTCSEEEEEBS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEEC---------------------CC-CCEeeEEEEEEC
Confidence 3445688999999999999999999997 554 777887765 33 789999999999
Q ss_pred ChHHHHHHHHhhcccceeccCeeeeeecCC
Q 048783 83 TSTYITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 83 ~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+.++|..|+.+- ...++|++|+|..+.
T Consensus 64 ~~~~a~~Al~~~---~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 64 SEQDVQKALEKH---RMYMGQRYVEVYEIN 90 (107)
T ss_dssp SHHHHHHHHTTT---TCCSSSSCCCCEECC
T ss_pred CHHHHHHHHHhC---cceeCCeEEEEEECC
Confidence 999999999942 367899999998543
No 89
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.47 E-value=5.2e-07 Score=85.16 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=65.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.+||.+.|+. .|.|..+++.. ++++|||+|++.++|.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~---------------------------~kg~AFVef~~~~~A~ 71 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMP---------------------------KKRQALVEFEDVLGAC 71 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEET---------------------------TTTEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEc---------------------------CCCEEEEEECCHHHHH
Confidence 4679999999999999999999998 79999988863 3689999999999999
Q ss_pred HHHHhhcccceeccCeeeeeec
Q 048783 89 RAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.|++......+.++|++|+|.-
T Consensus 72 ~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 72 NAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp HHHHHHHHSCEEETTEEEEEEE
T ss_pred HHHHHhcCCCceeCCcEEEEEe
Confidence 9999876556889999999984
No 90
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=3.4e-07 Score=83.12 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=66.4
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+.. .|..|+|..+ ..++++++|||+|.+.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~----------------------~~g~~~g~afV~f~~~~~ 62 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRN----------------------AHGNKTGYIFVDFSNEEE 62 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEEC----------------------TTSCEEEEEEEECSSHHH
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEEC----------------------CCCCCceEEEEEECCHHH
Confidence 3456899999999999999999999997 5777887763 246789999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|..|+. . +...++|+.|+|..+.
T Consensus 63 a~~A~~-~--~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 63 VKQALK-C--NREYMGGRYIEVFREK 85 (91)
T ss_dssp HHHHHH-S--CSEEETTEEEEEEEES
T ss_pred HHHHHH-h--CCceeCCcEEEEEECC
Confidence 999999 4 2478899999998543
No 91
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=8e-07 Score=83.89 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=69.1
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ . .++++++|||+|.+.++|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~---------------------~-~g~~~g~afV~f~~~~~a 69 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILED---------------------K-DGKSRGIGTVTFEQSIEA 69 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------T-TCSEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C-CCCeeeEEEEEECCHHHH
Confidence 35689999999999999999999997 799999999885 2 367899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
..|+.... ...++|+.|+|..+.
T Consensus 70 ~~A~~~l~--g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 70 VQAISMFN--GQLLFDRPMHVKMDE 92 (114)
T ss_dssp HHHHHHHT--TCEETTEECEEEECS
T ss_pred HHHHHHhC--CCEeCCCEEEEEEcc
Confidence 99999653 256789999998553
No 92
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.46 E-value=5.3e-07 Score=90.16 Aligned_cols=80 Identities=11% Similarity=0.146 Sum_probs=69.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. +|.|..|+|..+ ....+++++|||+|.+.++|.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A~ 95 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLD---------------------KMKKTACGFCFVEYYSRADAE 95 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCccceEEEEEECCHHHHH
Confidence 5689999999999999999999987 899999999886 335678999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.|+.... ...++|+.|+|..+.
T Consensus 96 ~Ai~~l~--g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 96 NAMRYIN--GTRLDDRIIRTDWDA 117 (156)
T ss_dssp HHHHHTT--TSEETTEECEEEEES
T ss_pred HHHHHhC--CCEECCeEEEEEECC
Confidence 9999653 367799999999543
No 93
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=2e-07 Score=87.42 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=66.4
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.+||++||+. +|.| .|+|..+ + ..+++++|||+|++.+.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~i~~d---------------------~-~g~~~G~afV~F~~~~~a 68 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVHIEIG---------------------P-DGRVTGEADVEFATHEDA 68 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEEEEES---------------------S-SSCEEEEEEEECSSSHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEEEEEC---------------------C-CCCEeeEEEEEECCHHHH
Confidence 45679999999999999999999998 7866 8888775 2 478999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
..|+.+ +...+++++|+|..+.
T Consensus 69 ~~Al~~---~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 69 VAAMAK---DKANMQHRYVELFLNS 90 (102)
T ss_dssp HHHHTT---SSCCSSSSCCEEEEEC
T ss_pred HHHHHh---CCCeECCcEEEEEECC
Confidence 999964 3468899999998443
No 94
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.45 E-value=5.1e-07 Score=85.49 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=66.5
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
..++|+|+|+|..++.++|.++|+. .|.|..|+|..+ .+++++|||+|.+.++|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~------------------------~~~~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNT------------------------PETRGTAYVVYEDIFDAK 61 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECS------------------------TTTTTCEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC------------------------CCCCcEEEEEECCHHHHH
Confidence 4679999999999999999999987 899999999864 456899999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
.|+.... ...++|+.|+|..+
T Consensus 62 ~A~~~l~--g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 62 NAVDHLS--GFNVSNRYLVVLYY 82 (115)
T ss_dssp HHHHHHT--TCBSSSCBCEEEEC
T ss_pred HHHHHcC--CCEECCeEEEEEEe
Confidence 9999653 25779999999843
No 95
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.45 E-value=8.7e-07 Score=87.40 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=75.5
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
+||+|+|+|.+++.++|.++|+. .|.|..|+|..+ +.++++++|||+|.+.++|..|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~----------------------~~~~~~g~afV~f~~~~~a~~A 57 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMID----------------------KNNKNVNYAFVEYHQSHDANIA 57 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEECC----------------------CC-CCEEEEEEEESSHHHHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEEC----------------------CCCCCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999997 799999999875 2356899999999999999999
Q ss_pred HHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeee
Q 048783 91 MDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
+.... ...++|+.|+|..+....- .-.-+.-+|.+|.+-
T Consensus 58 ~~~l~--~~~~~g~~i~v~~~~~~~~----------~~~~~~~~l~v~nl~ 96 (166)
T 3md3_A 58 LQTLN--GKQIENNIVKINWAFQSQQ----------SSSDDTFNLFVGDLN 96 (166)
T ss_dssp HHHHT--TCEETTEECEEEECCCCCC----------CCCTTCEEEEEESCC
T ss_pred HHHcC--CCccCCCeeEEEEcCCCCC----------CCCCCCceEEECCCC
Confidence 96553 3577999999985543321 112245578888764
No 96
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.44 E-value=4.5e-07 Score=85.91 Aligned_cols=86 Identities=21% Similarity=0.391 Sum_probs=69.8
Q ss_pred cCceeeEEEEeCCCccccHHHHH---HHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEec
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLV---KYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFA 82 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~---~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~ 82 (1117)
+....++|+|+|+|..++.++|+ ++|+. .|.|..|+|..+- ...+..+++++|||+|.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~------------------~~~~~~~~~G~afV~f~ 71 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNST------------------SYAGSQGPSASAYVTYI 71 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCS------------------SCCSSSCCCEEEEEEES
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCC------------------CcCccCCCCeEEEEEEC
Confidence 34456899999999999999999 99987 8999999997650 11223467899999999
Q ss_pred ChHHHHHHHHhhcccceeccCeeeeeecCC
Q 048783 83 TSTYITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 83 ~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+.++|..|+.... ...++|+.|+|..+.
T Consensus 72 ~~~~A~~Ai~~ln--g~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 72 RSEDALRAIQCVN--NVVVDGRTLKASLGT 99 (111)
T ss_dssp SHHHHHHHHHHHT--TEEETTEEEEEESCC
T ss_pred cHHHHHHHHHHhC--CCEECCEEEEEEecc
Confidence 9999999999764 356899999999443
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.44 E-value=2e-07 Score=85.72 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=66.0
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|++... +..++++++|||+|.+.+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~---------------------~~~g~~~g~afV~f~~~~~a 70 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKY---------------------NEKGMPTGEAMVAFESRDEA 70 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEE---------------------CSSSCEEEEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEE---------------------CCCCCeeeEEEEEECCHHHH
Confidence 34689999999999999999999988 687665555544 34578999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.... ...++|+.|+|..+
T Consensus 71 ~~Ai~~l~--g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 71 TAAVIDLN--DRPIGSRKVKLVLG 92 (98)
T ss_dssp HHHHHHTT--TCEETTEECEEEES
T ss_pred HHHHHHhC--CCeeCCeEEEEEEc
Confidence 99997653 25789999999854
No 98
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.43 E-value=6.9e-07 Score=93.75 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=78.2
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.+||+|+|+|.+++.++|+++|+. +|.|..|+|..+ ...++++++|||+|.+.++|.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~~G~afV~F~~~~~A~ 71 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVCRD---------------------MITRRSLGYAYVNFQQPADAE 71 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEecc---------------------cCCCCccccccceeCCHHHHH
Confidence 3579999999999999999999987 899999999886 335789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeee
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
.|+.... ...++|+.|++..+..... ...-..-.|.||.+-
T Consensus 72 ~Ai~~~~--~~~~~g~~i~~~~~~~~~~----------~~~~~~~~l~v~nl~ 112 (213)
T 4f02_A 72 RALDTMN--FDVIKGKPVRIMWSQRDPS----------LRKSGVGNIFIKNLD 112 (213)
T ss_dssp HHHHHHT--TCEETTEECEEEECCCCTH----------HHHHCTTEEEEESCC
T ss_pred HHHHHhh--hhhcCCccccccccccccc----------ccccccccceECCcc
Confidence 9998764 3678999999985544432 111223467788764
No 99
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=4.2e-07 Score=86.74 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=65.8
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
..+|+|+|+|..++.+||++||+.. .|..|+|..+ + .++++++|||+|.+.+.|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d---------------------~-~g~~~G~afV~F~~~~~a~~ 71 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKD---------------------H-VGRNNGNGLVKFLSPQDTFE 71 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCC---------------------T-TCCCCSEEEEECSSHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEEC---------------------C-CCCCCeEEEEEECCHHHHHH
Confidence 4689999999999999999999996 5777888764 2 37899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCC
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|+.+- .-.++|++|+|..+...
T Consensus 72 Al~~~---~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 72 ALKRN---RMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHHTT---TEEETTEEEEEEECCHH
T ss_pred HHhcC---CCeECCeEEEEEECCcc
Confidence 99543 46899999999865443
No 100
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.42 E-value=8.3e-07 Score=87.62 Aligned_cols=96 Identities=16% Similarity=0.268 Sum_probs=77.3
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.++++|..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~---------------------~~~~~~~g~afV~f~~~~~A~~ 59 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRD---------------------KITGQSLGYGFVNYIDPKDAEK 59 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC---------------------CCCCcceeEEEEEECCHHHHHH
Confidence 379999999999999999999997 899999999886 3357899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeee
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
|+.... ...++|+.|+|..+..... ...+-+|.+|.+-
T Consensus 60 a~~~l~--~~~~~g~~l~v~~~~~~~~------------~~~~~~l~v~nl~ 97 (167)
T 1fxl_A 60 AINTLN--GLRLQTKTIKVSYARPSSA------------SIRDANLYVSGLP 97 (167)
T ss_dssp HHHHHT--TCEETTEECEEEECCCCCG------------GGTTCEEEEESCC
T ss_pred HHHHcC--CCccCCceEEEEecCCCcc------------cCCCCcEEECCCC
Confidence 998653 3678999999985443321 1234567888764
No 101
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=8.9e-07 Score=83.74 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=67.9
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|.. .+++|||+|.+.++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~---------------------------~kg~aFVef~~~~~A 64 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMP---------------------------FKRQALVEFENIDSA 64 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEET---------------------------TTTEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEC---------------------------CCCEEEEEECCHHHH
Confidence 35689999999999999999999998 89999988763 268999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
..|+.......+.++|+.|+|..+....
T Consensus 65 ~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 65 KECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred HHHHHHhccCCceECCEEEEEEEccCcc
Confidence 9999865444578999999999655444
No 102
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5.4e-07 Score=82.99 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=64.8
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.....++|+|+|+|..++.++|+++|+. .|.|. |++.+. ++++||||+|.+.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~-------------------------~~~g~afV~f~~~~ 67 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ-------------------------GPRRRAFLHYPDSA 67 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE-------------------------TTTTEEEEECSSHH
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC-------------------------CCCcEEEEEECCHH
Confidence 3445789999999999999999999997 78875 666653 68899999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
+|..|+.... ...++|+.|+|..+
T Consensus 68 ~a~~A~~~l~--g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 68 AAQQAVSCLQ--GLRLGTDTLRVALA 91 (97)
T ss_dssp HHHHHHHHHT--TCCSSSSCCEEEEC
T ss_pred HHHHHHHHhC--CCEECCcEEEEEEc
Confidence 9999998653 36789999999843
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.42 E-value=2.9e-07 Score=84.33 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=66.6
Q ss_pred ceeeEEEEeCCCccccHHHHH----HHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 8 SVDTQVSVGGFDRDIKAVDLV----KYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~----~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
.-.++|+|+|+|..++.++|. ++|+. .|.|..|++... ++++++|||+|.+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~~------------------------~~~~g~afV~f~~ 60 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSRS------------------------LKMRGQAFVIFKE 60 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCHH------------------------HHHTTCEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEcC------------------------CCcCcEEEEEeCC
Confidence 346899999999999999999 78776 788998887642 5688999999999
Q ss_pred hHHHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 84 STYITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.++|..|+..... ..++|+.|+|..+...+
T Consensus 61 ~~~A~~A~~~l~g--~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 61 VSSATNALRSMQG--FPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHHHHHHHTT--CEETTEECEEEECSSCC
T ss_pred HHHHHHHHHHhCC--CEECCcEEEEEEccCCC
Confidence 9999999986532 56789999999554443
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.42 E-value=2.4e-07 Score=89.02 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=67.0
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhcccc---EEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGG---VWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
-.++|+|+|+|..++.+||++||+. +|. |..|+|..+ .. ++++++|||+|.+.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~---------------------~~-g~~~G~afV~F~~~~ 72 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYT---------------------RE-GRQSGEAFVELESED 72 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEEC---------------------SS-SCEEEEEEEEBSSHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEEC---------------------CC-CCCCeEEEEEECCHH
Confidence 4578999999999999999999998 676 788888875 33 789999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+|..|+.+ +...++|++|+|..+.
T Consensus 73 ~a~~Al~~---~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 73 DVKLALKK---DRESMGHRYIEVFKSH 96 (118)
T ss_dssp HHHHHGGG---TTEEETTEEEEEEEEC
T ss_pred HHHHHHhc---CCCeECCeEEEEEECC
Confidence 99999995 2478899999998543
No 105
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.41 E-value=4.8e-07 Score=86.69 Aligned_cols=77 Identities=9% Similarity=0.155 Sum_probs=65.4
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVG-GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
-..+|+|+|+|.+++.++|+++|+. +| .|..|+|.+. +++++|||+|++.+.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~-------------------------~~rGfaFV~F~~~e~A 80 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR-------------------------DFDGTGALEFPSEEIL 80 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC-------------------------SSSCCEEEEESSHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC-------------------------CCCCEEEEEECCHHHH
Confidence 3579999999999999999999998 68 7888877542 4789999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
..|+.... ...++|+.|+|..+..
T Consensus 81 ~~Ai~~ln--g~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 81 VEALERLN--NIEFRGSVITVERDDN 104 (111)
T ss_dssp HHHHHHTT--TEEETTEEEEEEESCC
T ss_pred HHHHHHcC--CCEECCeEEEEEECCC
Confidence 99998763 3688999999995543
No 106
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=1.5e-06 Score=78.74 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=65.1
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
....-.++|+|+|+|..++.++|+++|+. .|.|..|++. +++|||+|.+.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~-----------------------------~g~afV~f~~~ 52 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII-----------------------------KNYGFVHIEDK 52 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE-----------------------------TTEEEEEESSH
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE-----------------------------CCEEEEEECCH
Confidence 34456789999999999999999999998 7999888875 35999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
++|..|+.... ...++|+.|+|..+..
T Consensus 53 ~~A~~A~~~l~--g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 53 TAAEDAIRNLH--HYKLHGVNINVEASKN 79 (90)
T ss_dssp HHHHHHHHHHT--TCBCSSCBCEEECSSC
T ss_pred HHHHHHHHHhc--CCccCCcEEEEEECCC
Confidence 99999998653 3678999999994433
No 107
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.39 E-value=4.9e-07 Score=83.61 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=64.5
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRA 90 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a 90 (1117)
++|+|+|+|..++.++|+++|+. .|.|..|++..+ ++++|||+|.+.++|..|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~f~~~~~a~~A 53 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN--------------------------PPGFAFVEFEDPRDAEDA 53 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS--------------------------SSSEEEEECSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC--------------------------CCCEEEEEECCHHHHHHH
Confidence 58999999999999999999987 798888888751 788999999999999999
Q ss_pred HHhhcccceeccCeeeeeecCCCCC
Q 048783 91 MDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 91 ~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
+..... ..++|+.|+|..+...+
T Consensus 54 ~~~l~g--~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 54 VRGLDG--KVICGSRVRVELSTGMP 76 (101)
T ss_dssp HHHHHH--SCSSSCCCEEEESSSCC
T ss_pred HHHHCC--CeECCcEEEEEEccCCC
Confidence 996532 46899999999654443
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.39 E-value=3.6e-07 Score=90.00 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=69.5
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...++++++|||+|.+.++|.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~G~afV~F~~~~~A~ 103 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPRD---------------------RYTKESRGFAFVRFHDKRDAE 103 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGG-GSCCSEEECCCC---------------------SSSSSCCSCCEEECSCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCccceEEEEEECCHHHHH
Confidence 4578999999999999999999988 899988888765 335789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+.... ...++|+.|+|..+...
T Consensus 104 ~Ai~~l~--g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 104 DAMDAMD--GAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHHTTTT--TCCSSSSCCEEEECCCC
T ss_pred HHHHHcC--CCEECCEEEEEEECCCC
Confidence 9998653 35689999999955433
No 109
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=9.7e-07 Score=78.80 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=64.4
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+.-.++|+|+|+|..++.++|+++|+. .|.|..|++.. ++++|||+|.+.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~---------------------------~kg~afV~f~~~~ 59 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQ---------------------------RQQCAFIQFATRQ 59 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEG---------------------------GGTEEEEEESSHH
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEEC---------------------------CCCEEEEEECCHH
Confidence 3445689999999999999999999987 79999988874 3589999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeec
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
+|..|+.... +...++|+.|+|..
T Consensus 60 ~A~~a~~~l~-~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 60 AAEVAAEKSF-NKLIVNGRRLNVKW 83 (85)
T ss_dssp HHHHHHHTTT-TTCEETTEECCEEE
T ss_pred HHHHHHHHhc-CCeeECCCEEEEEe
Confidence 9999999542 23678899999873
No 110
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.39 E-value=3.1e-07 Score=91.10 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=67.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhcccc---EEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGG---VWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
.++|+|+|+|.+++.+||++||+. +|. |..|+|..+ .. ++++++|||+|++.++
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d---------------------~~-g~srG~aFV~F~~~e~ 100 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYT---------------------RE-GRQSGEAFVELGSEDD 100 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEEC---------------------SS-SCEEEEEEEECSSHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEEC---------------------CC-CCCCeEEEEEECCHHH
Confidence 578999999999999999999998 787 788888875 33 7899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|..|+.+- ...++|++|+|..+.
T Consensus 101 a~~Al~~~---g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 101 VKMALKKD---RESMGHRYIEVFKSH 123 (136)
T ss_dssp HHHHHTTT---EEESSSSEEEEEECC
T ss_pred HHHHHhcC---CCEECCEEEEEEECC
Confidence 99999943 368899999998543
No 111
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.38 E-value=4.5e-07 Score=88.88 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=65.1
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEE-EEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVW-RCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
-.++|+|+|+|..++.+||++||+.. |.+. .|+|..+ +. ++++++|||+|++++.|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d---------------------~~-GrsrGfaFV~F~~~e~A 97 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD---------------------PE-GKITGEAFVQFASQELA 97 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC---------------------SS-SSSCSEEEEEESSTTHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC---------------------CC-CCCceEEEEEECCHHHH
Confidence 45789999999999999999999997 6442 7887765 33 78999999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.+- .-.++|++|+|..+
T Consensus 98 ~~Al~~~---~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 98 EKALGKH---KERIGHRYIEVFKS 118 (126)
T ss_dssp HHHHTTT---TCCBTTBCCCCEEE
T ss_pred HHHHHHC---CCEECCEEEEEEEC
Confidence 9999863 26789999999844
No 112
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.38 E-value=2e-07 Score=86.27 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=62.3
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. .|.|.. ++..+ ...+++++||||+|.+.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~---------------------~~~g~~~g~afV~f~~~~~ 70 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVD---------------------VRTGTNRKFGYVDFESAED 70 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCE---------------------EEEETTTTEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEec---------------------CCCCCcCcEEEEEECCHHH
Confidence 335789999999999999999999998 665443 22221 2246799999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+. .. ...++|+.|+|..+
T Consensus 71 a~~A~~-l~--g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 71 LEKALE-LT--GLKVFGNEIKLEKP 92 (101)
T ss_dssp HHHHHH-GG--GCCBTTBCCEEECC
T ss_pred HHHHHh-cC--CcEECCcEEEEEEc
Confidence 999998 32 36788999999944
No 113
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.37 E-value=1.1e-06 Score=88.98 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=70.0
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|... ...+++++||||+|.+.++|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A~ 128 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLD---------------------RRTGFSKGYALVEYETHKQAL 128 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTSSEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEEEec---------------------CCCCcEeeEEEEEECCHHHHH
Confidence 4578999999999999999999987 799999999886 345789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+.... ...++|+.|+|..+...
T Consensus 129 ~Ai~~l~--g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 129 AAKEALN--GAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHHHHT--TCEETTEECEEEESEEC
T ss_pred HHHHHhC--CCEECCEEEEEEEecCC
Confidence 9998653 36779999999855433
No 114
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.37 E-value=8.9e-07 Score=87.83 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=76.5
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|++..+ ...++++++|||+|.+.++|..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A~~ 60 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMRD---------------------YKTGYSYGYAFVDFTSEMDSQR 60 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEE---------------------TTTTEECSEEEEEESSHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEe---------------------CCCCccceEEEEEECCHHHHHH
Confidence 378999999999999999999988 899999998875 3356799999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeee
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
|+.... ...++|+.|+|..+....- ..++-+|.+|.+-
T Consensus 61 a~~~l~--~~~~~g~~l~v~~~~~~~~------------~~~~~~l~v~nl~ 98 (168)
T 1b7f_A 61 AIKVLN--GITVRNKRLKVSYARPGGE------------SIKDTNLYVTNLP 98 (168)
T ss_dssp HHHHHT--TCEETTEECEEEECCCCSS------------TTTTCEEEEESCC
T ss_pred HHHhcC--CCEeCCcEEEEEecCCCcc------------cCCCCCEEEeCCC
Confidence 998543 3677999999985433321 1234567777764
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=7.9e-07 Score=86.42 Aligned_cols=80 Identities=10% Similarity=0.162 Sum_probs=67.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.+||+++|+. .|.|..|+|..+ +++|||+|++.++|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~---------------------------kG~AFVeF~~~e~A 80 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG---------------------------KNQAFIEMNTEEAA 80 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG---------------------------GTEEEEECSCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC---------------------------CCEEEEEECCHHHH
Confidence 35689999999999999999999987 899999988752 68999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
..|+.........++|++|+|..+....
T Consensus 81 ~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 81 NTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred HHHHHHhccCCceECCeEEEEEEccCCC
Confidence 9999875433467999999999655444
No 116
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.8e-06 Score=85.08 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=69.6
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|.|+|+|..++.++|+++|+. .|.|..+++..+ ...++++++|||+|.+.++
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWD---------------------MQTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEEC---------------------TTTCCEEEEEEEEESCHHH
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEec---------------------CCCCCcceEEEEEeCCHHH
Confidence 335679999999999999999999976 899999999876 3457899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.... ...++|+.|+|+.+
T Consensus 142 A~~A~~~l~--g~~~~g~~i~v~~a 164 (166)
T 3md3_A 142 AQNAMDSMQ--GQDLNGRPLRINWA 164 (166)
T ss_dssp HHHHHHHHT--TCEETTEECEEEES
T ss_pred HHHHHHHhC--CCccCCcEEEEEec
Confidence 999999653 25689999999843
No 117
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.33 E-value=1.3e-06 Score=78.14 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=60.4
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhcc---c-------cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEE
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEV---G-------GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAF 78 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~---G-------~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af 78 (1117)
-.++|+|+|+|..++.++|+++|++.. | .|..|++.. ++++||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---------------------------~kg~af 57 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------------------------DKNFAF 57 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---------------------------SSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---------------------------CCcEEE
Confidence 467999999999999999999999863 7 788777653 378999
Q ss_pred EEecChHHHHHHHHhhcccceeccCeeeeee
Q 048783 79 VHFATSTYITRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 79 V~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|+|.+.++|..|+ ... ...++|+.|+|+
T Consensus 58 V~f~~~~~a~~A~-~l~--g~~~~g~~l~V~ 85 (87)
T 2hzc_A 58 LEFRSVDETTQAM-AFD--GIIFQGQSLKIR 85 (87)
T ss_dssp EEESSHHHHHHHG-GGT--TCEETTEECEEE
T ss_pred EEcCCHHHHHHHH-hcC--CCEECCeEEEEe
Confidence 9999999999999 442 367899999998
No 118
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.33 E-value=1.8e-06 Score=89.40 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=70.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|.|+|+|..++.++|+++|+. .|.|..|+|... +..++++++|||+|.+.++|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARD---------------------PTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEec---------------------CCCCCcCceEEEEecCHHHHH
Confidence 3479999999999999999999987 899999999886 335788999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.|+.... ...++|+.|+|..+-..+
T Consensus 182 ~A~~~l~--g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 182 DAVSSMN--LFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHT--TCBCSSSBCEEEECSSCS
T ss_pred HHHHHcc--CCEeCCcEEEEEEecCCC
Confidence 9999653 257899999999554443
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.2e-06 Score=81.08 Aligned_cols=80 Identities=15% Similarity=0.259 Sum_probs=64.6
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. +|.| ++.. +..++++++|||+|.+.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~----------------------~~~g~~~g~afV~f~~~~~ 65 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQ----------------------NQNGKSKGYAFIEFASFED 65 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCB----------------------CSSSCBCSEEEEECSSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEE----------------------CCCCCEeeEEEEEECCHHH
Confidence 445789999999999999999999998 6876 2222 1246789999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|..|+.... ...++|+.|+|..+...
T Consensus 66 A~~A~~~l~--g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 66 AKEALNSCN--KREIEGRAIRLELQGPR 91 (101)
T ss_dssp HHHHHHHTS--SEEETTEEEEEEECSSC
T ss_pred HHHHHHHhC--CCEeCCeEEEEEEcCCC
Confidence 999999653 37788999999954433
No 120
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.32 E-value=1.4e-06 Score=79.58 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=60.5
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++++|+|+|.+++.++|.++|+. .|.|..|+|.. .+++||||+|.+.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~--------------------------~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPK--------------------------PFRAFAFVTFADDK 59 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCS--------------------------SCCSEEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEee--------------------------CCCCEEEEEECCHH
Confidence 3445689999999999999999999998 79999998875 27899999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
+|.. + -+ ..+.++|+.|+|+.+
T Consensus 60 ~A~~-~--~~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 60 VAQS-L--CG-EDLIIKGISVHISNA 81 (89)
T ss_dssp HHHH-H--TT-CEEEETTEEEEEEEC
T ss_pred HHHH-H--cC-CCcccCCEEEEEEEc
Confidence 9983 2 22 246788999999843
No 121
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.32 E-value=8.4e-07 Score=83.88 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=65.5
Q ss_pred eeeEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 9 VDTQVSVGGFDR-DIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 9 ~~~~v~v~gf~~-~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
-.++|+|+|+|. .++.+||.++|+. .|.|..|+|..+ +++|||+|++.++|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~---------------------------kg~aFVef~~~~~A 65 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNK---------------------------INEAFIEMATTEDA 65 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSS---------------------------SSCEEEEESSHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcC---------------------------CCEEEEEECCHHHH
Confidence 467999999999 9999999999997 799999998753 37999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
..|+.......+.++|+.|+|..+.
T Consensus 66 ~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 66 QAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp HHHHHHHHHSCCEETTEECEEEEEC
T ss_pred HHHHHHHcCCCceECCcEEEEEECC
Confidence 9999876434577899999998544
No 122
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.31 E-value=9.6e-07 Score=87.66 Aligned_cols=94 Identities=13% Similarity=0.258 Sum_probs=75.1
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|.+++.++|.++|+. .|.|..|+|..+ +..++++++|||+|.+.++|..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a~~ 60 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKIMKD---------------------PATGRSRGFGFLSFEKPSSVDE 60 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEECCCC---------------------TTTSSCCSCEEEEESSTHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEC---------------------CCCCCccceEEEEEccHHHHHH
Confidence 479999999999999999999988 899999998875 3357899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeee
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
|+.. + ..++|+.|++..+.... -.-..-+|.+|.+-
T Consensus 61 A~~~-~---~~~~g~~i~v~~~~~~~------------~~~~~~~l~V~nlp 96 (167)
T 2cjk_A 61 VVKT-Q---HILDGKVIDPKRAIPRD------------EQDKTGKIFVGGIG 96 (167)
T ss_dssp HHHS-C---CEETTEECCCEECCCHH------------HHHHCEEEEEEEEC
T ss_pred HHhc-c---cccCCeEcccccccchh------------hccCCCeEEECCCC
Confidence 9984 2 47899999988432221 11234578888764
No 123
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.8e-06 Score=77.75 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=63.6
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
.+..-.++|+|+|+|..++.++|+++|+. .|.|..| +... ..++ ||||+|.+.
T Consensus 3 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v-~~~~----------------------~~g~---~afV~f~~~ 55 (94)
T 2e5g_A 3 SGSSGLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV-VMDK----------------------DKGV---FAIVEMGDV 55 (94)
T ss_dssp SCCTTCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE-EECS----------------------SSCC---EEEEEESSH
T ss_pred CccCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE-EEcC----------------------CCCc---EEEEEECCH
Confidence 34445689999999999999999999997 8988877 3221 1122 999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
++|..|+. . +...++|+.|+|..+....
T Consensus 56 ~~a~~ai~-l--~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 56 GAREAVLS-Q--SQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp HHHHHHHT-C--SCCEETTEECCCBCSCCSC
T ss_pred HHHHHHHh-c--CCeEECCEEEEEEECCcCC
Confidence 99999999 3 2367899999999554443
No 124
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=1.3e-06 Score=82.54 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=64.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccE----EEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGV----WRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
-.++|+|+|+|..++.++|.++|+. .|.| ..+++.+ +++++||||+|.+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~-------------------------g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMMT-------------------------GRMRGQAFITFPNK 77 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEEC-------------------------SSSCSEEEEECSSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcCC-------------------------CccceEEEEEECCH
Confidence 4589999999999999999999998 6776 4555553 57899999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
++|..|+..... ..++|+.|+|..+....
T Consensus 78 ~~a~~Ai~~l~g--~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 78 EIAWQALHLVNG--YKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HHHHHHHHHSTT--CBCSSCBCEEEECCCCS
T ss_pred HHHHHHHHHhCC--CEeCCcEEEEEEccCCC
Confidence 999999987542 56799999999554443
No 125
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=1e-06 Score=81.48 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=64.1
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++|+|+|+|..++.++|+++|+.. + .|++... ...+++++||||+|.+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-~---~~~~~~~---------------------~~~~~~~g~afV~f~~~~ 65 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS-V---RARIVTD---------------------RETGSSKGFGFVDFNSEE 65 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC-S---EEEEEEC---------------------SSSCSEEEEEEEECSSHH
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC-e---EEEEEec---------------------CCCCCcCcEEEEEECCHH
Confidence 44567899999999999999999999964 3 3444443 234688999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
+|..|+.... ...++|+.|+|..+..
T Consensus 66 ~A~~A~~~l~--g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 66 DAKAAKEAME--DGEIDGNKVTLDWAKP 91 (102)
T ss_dssp HHHHHHHHHT--TCEETTEECEEEECCC
T ss_pred HHHHHHHHhC--CCeECCeEEEEEEecC
Confidence 9999998653 2578999999995433
No 126
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.31 E-value=7.2e-07 Score=80.75 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=64.4
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|+++|+.. .|..|+|. +++++|||+|.+.++|..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~---------------------------~~~g~afV~f~~~~~a~~ 55 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD---------------------------RNKRTAFVTLLNGEQAQN 55 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE---------------------------GGGTEEEECCSCHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe---------------------------CCCcEEEEEECCHHHHHH
Confidence 4789999999999999999999997 56666662 467899999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCCCc
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
|+.... ...++|+.|+|..++.+.+
T Consensus 56 Ai~~l~--g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 56 AIQMFH--QYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp HHHHHT--TEEETTEEEEEEECCCCCC
T ss_pred HHHHhC--CCeECCcEEEEEEcCCCce
Confidence 999653 3678999999997777654
No 127
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.30 E-value=1.7e-06 Score=86.33 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=68.4
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|.|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.+.++|..
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKD---------------------SATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------TTTCSEEEEEEEEESSTTHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEec---------------------CCCCCcceEEEEEeCCHHHHHH
Confidence 578999999999999999999996 899999999876 3357899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecC
Q 048783 90 AMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|+.... ...++|+.|+|+.+
T Consensus 152 A~~~l~--g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 152 AIAGLN--GMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHT--TCEETTEECEEEEC
T ss_pred HHHHcC--CCEECCeEEEEEeC
Confidence 999653 36789999999843
No 128
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=8.1e-07 Score=84.51 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=61.7
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. .|.|. +++... ...+..+++++||||+|.+.++
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~------------------~~~~~~g~~~G~aFV~f~~~~~ 64 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHK------------------AESKSYFPPKGYAFLLFQEESS 64 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTS------------------SSSCCCSCTTSEEEECCSSHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeec------------------CCCCCCCCcccEEEEEECCHHH
Confidence 345689999999999999999999997 78877 555443 0011126899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeee
Q 048783 87 ITRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
|..|+.+.. -++|+.|.+.
T Consensus 65 a~~Ai~~~~----~~~G~~~~~~ 83 (114)
T 2dnl_A 65 VQALIDACL----EEDGKLYLCV 83 (114)
T ss_dssp HHHHHHHSE----EETTEEEEEE
T ss_pred HHHHHHhhh----hcCCcEEEec
Confidence 999998762 2677777766
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=2.5e-06 Score=80.18 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=66.6
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +++|||+|.+.++|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------------~g~afV~f~~~~~a 74 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE---------------------------KGYSFVRFSTHESA 74 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT---------------------------TTEEEEEESSHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC---------------------------CCEEEEEECCHHHH
Confidence 35689999999999999999999997 899999988751 68999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
..|+.... ...++|+.|+|..+...+
T Consensus 75 ~~A~~~l~--g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 75 AHAIVSVN--GTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HHHHHHHT--TCEETTEECEEECCCCCC
T ss_pred HHHHHHcC--CCEECCcEEEEEecCCCC
Confidence 99997653 257899999999655544
No 130
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.29 E-value=2.2e-06 Score=85.43 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=72.4
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCC--CccceEEEEecChHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYE--KVEPHAFVHFATSTYI 87 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~afV~F~~~e~a 87 (1117)
.++|+|+|+|.+++.++|.++|+. .|.|..|+|... ...+ +++++|||+|.+.++|
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~~~g~afV~f~~~~~A 60 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRD---------------------RSQNPPQSKGCCFVTFYTRKAA 60 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEE---------------------CSSSSCEEEEEEEEEESSHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEec---------------------CCCCCCCcceEEEEEECCHHHH
Confidence 479999999999999999999987 799999999886 2223 7899999999999999
Q ss_pred HHHHHhhcccceecc--CeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeee
Q 048783 88 TRAMDAAEHMELFLN--GRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~--~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
..|+...... .+++ ++++++..+.... .-..+.-+|.||.+-
T Consensus 61 ~~A~~~l~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~v~nl~ 104 (175)
T 3nmr_A 61 LEAQNALHNM-KVLPGMHHPIQMKPADSEK-----------NNAVEDRKLFIGMIS 104 (175)
T ss_dssp HHHHHHHTTT-CCCTTCSSCCEEEECGGGC-----------CSCGGGSEEEEESCC
T ss_pred HHHHHHhcCc-EEccCCccceEEccccccc-----------cccCCCCeEEEcCCC
Confidence 9999866432 2333 5666666322111 111234578888764
No 131
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.29 E-value=1.2e-06 Score=87.03 Aligned_cols=77 Identities=14% Similarity=0.335 Sum_probs=67.4
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.+.++|..
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLD---------------------KDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCS---------------------SSSSTTSEEEEEEESSHHHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEc---------------------CCCCccceEEEEEECCHHHHHH
Confidence 568999999999999999999997 799988888765 3357899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecC
Q 048783 90 AMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|+.+ +...++|+.|+|..+
T Consensus 145 A~~~---~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 145 VCQN---KFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHHC---SEECSSSSCEEEEEC
T ss_pred HHhC---CCEEeCCeEEEEeec
Confidence 9984 347899999999843
No 132
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.28 E-value=1.4e-06 Score=93.50 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=68.0
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccc--cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVG--GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
-.++|+|+|++..++.++|+++|+. +| .|..|+|..+ ...+++++||||+|.+.++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d---------------------~~tg~skGfaFV~f~~~~~ 124 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFEN---------------------RANGQSKGFALVGVGSEAS 124 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEEC---------------------TTTCCEEEEEEEEESCTTH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEec---------------------CCCCccceEEEEEECCHHH
Confidence 3578999999999999999999976 89 8999999886 4467899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.... ...|+|+.|+|..+
T Consensus 125 a~~Ai~~ln--g~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 125 SKKLMDLLP--KRELHGQNPVVTPV 147 (229)
T ss_dssp HHHHHTTST--TSCBTTBCCEEEEC
T ss_pred HHHHHHHcC--CCeECCEEeEEEEC
Confidence 999998653 35789999999954
No 133
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=5.6e-07 Score=87.80 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=64.1
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhcc---ccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEV---GGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~---G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..+|+|+|+|..++.+||++||+... |.|..|+|..+ +.++++++|||+|++.+.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d----------------------~~gr~~G~aFV~F~~~~~ 80 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY----------------------PDGRPTGDAFVLFACEEY 80 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC----------------------TTSCEEEEEEECCSSHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC----------------------CCCCEeeEEEEEECCHHH
Confidence 47899999999999999999999843 33467777764 247899999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.. +.-.+++++|+|..+
T Consensus 81 A~~Al~~---~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 81 AQNALRK---HKDLLGKRYIELFRS 102 (123)
T ss_dssp HHHHHTT---TTEESSSCEECCEEE
T ss_pred HHHHHHh---CCCeeCCeEEEEEEC
Confidence 9999986 236789999999744
No 134
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.28 E-value=2.4e-06 Score=78.44 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=63.8
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
+..-.++|+|+|+|..++.++|.++|+. .|.|..|++.+. +++|||+|.+.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~---------------------------~g~afV~f~~~~ 64 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG---------------------------DSFAYIQYESLD 64 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS---------------------------SCCEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC---------------------------CCEEEEEECCHH
Confidence 3445689999999999999999999987 899999887641 679999999999
Q ss_pred HHHHHHHhhcccceecc--CeeeeeecC
Q 048783 86 YITRAMDAAEHMELFLN--GRALKVSLG 111 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~--~~~Lkv~~~ 111 (1117)
+|..|+..... ..++ |+.|+|..+
T Consensus 65 ~A~~A~~~l~g--~~~~~~g~~l~V~~a 90 (97)
T 1why_A 65 AAQAACAKMRG--FPLGGPDRRLRVDFA 90 (97)
T ss_dssp HHHHHHHHHTT--CBCSSSSCBCEEEEC
T ss_pred HHHHHHHHHCC--CEeCCCCcEEEEEEC
Confidence 99999996642 4556 999999943
No 135
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.28 E-value=5.9e-07 Score=87.54 Aligned_cols=83 Identities=10% Similarity=0.203 Sum_probs=69.0
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEE--EEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWR--CRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
.+...++|+|+|+|..++.++|+++|+. .|.|.. |+|..+ ...+++++||||+|.+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d---------------------~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKD---------------------KQTQLNRGFAFIQLST 76 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBC---------------------SSSSSBCSCEEEECCH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEc---------------------CCCCCcceEEEEEECC
Confidence 3456789999999999999999999986 798876 888775 3467899999999999
Q ss_pred hHHHHHHHHhhccc--ceeccCeeeeeecC
Q 048783 84 STYITRAMDAAEHM--ELFLNGRALKVSLG 111 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~--~l~~~~~~Lkv~~~ 111 (1117)
. .|..|+...... .+.++|+.|+|..+
T Consensus 77 ~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 77 I-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp H-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred H-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 9 999998876431 13889999999854
No 136
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.27 E-value=2e-06 Score=89.03 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=66.5
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
..++|+|+|+|.+++.++|+++|+. .|.|..|+|..+ ...++++++|||+|.+.++|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A~ 84 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAP-FGPIKSIDMSWD---------------------SVTMKHKGFAFVEYEVPEAAQ 84 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEECCC----------------------CC-CCCSEEEEEESSHHHHH
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEEEeec---------------------CCCCccCceEEEEeCCHHHHH
Confidence 4579999999999999999999988 799999999765 334679999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.|+.... ...++|+.|+|..+.
T Consensus 85 ~A~~~l~--~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 85 LALEQMN--SVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHHHHHS--SCCCC-CCCEEECCS
T ss_pred HHHHHcc--CCeeCCeeEEEecCC
Confidence 9999543 367899999998433
No 137
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.27 E-value=2e-06 Score=87.61 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=68.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.++|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTD---------------------RGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeec---------------------CCCCCccceEEEEECCHHHHH
Confidence 3479999999999999999999986 799999999886 335789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.|+... ...++|+.|+|+.+.
T Consensus 161 ~A~~~~---~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 161 KIVIQK---YHTVNGHNCEVRKAL 181 (196)
T ss_dssp HHHHCS---CCEETTEECEEEECC
T ss_pred HHHHhC---CcEECCEEEEEEecC
Confidence 999863 368999999998543
No 138
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=2e-06 Score=81.26 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=57.9
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|.++|+. .|.|..|+|... + .+++++||||+|.+.+.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---------------------~-~g~~~g~afV~f~~~~~a 79 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRD---------------------S-SGTSRGVGFARMESTEKC 79 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEEC---------------------S-SSCEEEEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEEC---------------------C-CCCcceEEEEEECCHHHH
Confidence 34689999999999999999999988 899999999885 2 468899999999999999
Q ss_pred HHHHHhhc
Q 048783 88 TRAMDAAE 95 (1117)
Q Consensus 88 ~~a~~~a~ 95 (1117)
..|+....
T Consensus 80 ~~A~~~l~ 87 (114)
T 1x5o_A 80 EAVIGHFN 87 (114)
T ss_dssp HHHHHHHB
T ss_pred HHHHHHhC
Confidence 99999653
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.26 E-value=2.4e-06 Score=83.64 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=65.4
Q ss_pred eeeEEEEeCCCccccHHHHHH----HHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 9 VDTQVSVGGFDRDIKAVDLVK----YLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~----~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
-.++|+|+|+|..++.++|++ +|+. .|.|..|.+..+ ++++++|||+|.+.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~~~------------------------~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVDLS------------------------DDNSGKAYIVFATQ 82 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECCC------------------------CSSCCCEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEeccC------------------------CCcCCEEEEEECCH
Confidence 357899999999999999875 5555 688988877543 57899999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
++|..|+.... ...+.|++|+|..+.....
T Consensus 83 ~~A~~Ai~~ln--g~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 83 ESAQAFVEAFQ--GYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp HHHHHHHHHST--TCCCTTSCCEEEECCCCCH
T ss_pred HHHHHHHHHHC--CCEeCCCEEEEEEccCcch
Confidence 99999998764 3577899999986655443
No 140
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.26 E-value=7.1e-07 Score=85.88 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=65.1
Q ss_pred eeeEEEEeCCCcc-ccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 9 VDTQVSVGGFDRD-IKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 9 ~~~~v~v~gf~~~-~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
-.++|+|+|+|.+ ++.+||.++|+. .|.|..|+|.. ++++|||+|++.++|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~---------------------------~kg~aFVef~~~~~A 75 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMR---------------------------MKSQAFIEMETREDA 75 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEET---------------------------TTTEEEEECSSHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEec---------------------------CCCEEEEEECCHHHH
Confidence 4689999999998 999999999987 79999998852 468999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.....+.+.++|+.|+|..+
T Consensus 76 ~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 76 MAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp HHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred HHHHHHhccCCceECCEEEEEEEC
Confidence 999987543457899999999854
No 141
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.2e-06 Score=79.20 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=62.3
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|++. ++++||||+|.+.++|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~---------------------------~~~g~afV~f~~~~~A~ 77 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY---------------------------PEKGCCFIKYDTHEQAA 77 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE---------------------------TTTTEEEEECSSHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe---------------------------cCCCEEEEEECCHHHHH
Confidence 4589999999999999999999988 7988887775 25789999999999999
Q ss_pred HHHHhhcccceeccCeeeeeec
Q 048783 89 RAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.|+.... ...++|+.|+|..
T Consensus 78 ~Ai~~l~--g~~~~g~~l~V~~ 97 (101)
T 2la4_A 78 VCIVALA--NFPFQGRNLRTGW 97 (101)
T ss_dssp HHHHHHT--TCEETTEECCCCB
T ss_pred HHHHHhC--CCeECCeEEEEEe
Confidence 9998653 3678899999983
No 142
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=1.7e-06 Score=78.82 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=63.9
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhcccc-EEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGG-VWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~-v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
...-.++|+|+|+|..++.++|+++|+. .|. |..+.++ ++++|||+|.+.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~----------------------------~~g~afV~f~~~ 54 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL----------------------------KSGYAFVDYPDQ 54 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE----------------------------ETTEEEECCSCH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc----------------------------CCCEEEEEECCH
Confidence 3445689999999999999999999988 676 5555542 468999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
++|..|+..... ...++|+.|+|..+...+
T Consensus 55 ~~A~~A~~~l~g-~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 55 NWAIRAIETLSG-KVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHHHHHHHHTT-TCEETTEECEEEECCCCC
T ss_pred HHHHHHHHHccC-CeeECCEEEEEEEccCcc
Confidence 999999986532 267899999999554443
No 143
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.25 E-value=2.3e-06 Score=89.30 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=67.0
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|.++|+. .|.|..|+|... . .++++++|||+|.+.++|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~---------------------~-~~~~kG~aFVeF~~~e~A~ 164 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRT---------------------L-HKAFKGSIFVVFDSIESAK 164 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEEEEC---------------------T-TCCEEEEEEEEESSHHHHH
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEEEEC---------------------C-CCCcccEEEEEECCHHHHH
Confidence 4589999999999999999999997 899999999875 1 2678999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeec
Q 048783 89 RAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
.|+...+ ..++|+.|+|..
T Consensus 165 ~A~~~~~---~~~~Gr~l~V~~ 183 (193)
T 2voo_A 165 KFVETPG---QKYKETDLLILF 183 (193)
T ss_dssp HHHHCTT---CEETTEECEEEE
T ss_pred HHHHhCC---CeECCEEEEEEE
Confidence 9997654 379999999983
No 144
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.24 E-value=2.4e-06 Score=80.83 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=63.7
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+.-.++|+|+|+|..++.++|.++|+. .|.|..|++. +++|||+|.+.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~-----------------------------kg~afV~f~~~~ 76 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL-----------------------------NGFAFVEFEEAE 76 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE-----------------------------TTEEEEECSSHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE-----------------------------CCEEEEEECCHH
Confidence 4456789999999999999999999987 8888777765 579999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
+|..|+..... ..++|+.|+|..+..
T Consensus 77 ~A~~Ai~~l~g--~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 77 SAAKAIEEVHG--KSFANQPLEVVYSKL 102 (108)
T ss_dssp HHHHHHHHHTT--CEETTEECEEESCSC
T ss_pred HHHHHHHHcCC--CEECCeEEEEEEecC
Confidence 99999986532 567999999994433
No 145
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.24 E-value=5.1e-06 Score=75.53 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=65.3
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
....-.++|+|+|+|..++.++|+++|+. .|.|..|++.. .+|||+|.+.
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~~-----------------------------~~afV~f~~~ 54 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIVK-----------------------------DYAFVHMERA 54 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEECS-----------------------------SEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEC-----------------------------CEEEEEECCH
Confidence 34556789999999999999999999998 89888887752 2999999999
Q ss_pred HHHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 85 TYITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 85 e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
++|..|+.... ...++|+.|+|..+...
T Consensus 55 ~~a~~A~~~l~--g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 55 EDAVEAIRGLD--NTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp HHHHHHHHHHT--TEEETTEEEEEEESSCC
T ss_pred HHHHHHHHHhC--CCeeCCcEEEEEEccCC
Confidence 99999998653 35789999999955443
No 146
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.8e-06 Score=85.13 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=67.2
Q ss_pred eeEEEEeCC----CccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC--
Q 048783 10 DTQVSVGGF----DRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT-- 83 (1117)
Q Consensus 10 ~~~v~v~gf----~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~-- 83 (1117)
.++|+|||+ |..++..+|++||.+ .|.|-.|++.++ +.+++|++||||.|.+
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~D---------------------p~Tg~slGfgfVef~d~~ 59 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFND---------------------PNSALPLHVYLIKYASSD 59 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEEC---------------------TTTCCEEEEEEEECC---
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCceeeEEEEEECCCC
Confidence 478999999 999999999999995 999999999998 6679999999999996
Q ss_pred --h-HH---HHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 84 --S-TY---ITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 84 --~-e~---a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
+ ++ |..|+.-...+...++|+.|+|.+...+
T Consensus 60 g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 60 GKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp ---CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred CCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 4 44 4444432233557999999999966554
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=3.5e-06 Score=80.03 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=68.2
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
++.-.++|+|+|+|..++.++|+++|+. .|.|..|+|.. ++++|||+|.+.+
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~---------------------------~~g~afV~f~~~~ 57 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE---------------------------GGITAIVEFLEPL 57 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS---------------------------SSSCEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC---------------------------CCCEEEEEeCCHH
Confidence 4456789999999999999999999997 89998887642 4578999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
+|..|+.... ...++|+.|+|..+..+.+
T Consensus 58 ~A~~Ai~~l~--g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 58 EARKAFRHLA--YSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp HHHHHHHHHT--TCBSSSSBCEEEEEETTTT
T ss_pred HHHHHHHHhC--CCEECCeEEEEEECCCCcc
Confidence 9999998763 2568899999997766654
No 148
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.23 E-value=1.9e-06 Score=88.74 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=70.2
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. +|.|..|+|... . .++++++|||+|.+.++|.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~-~g~~kG~afV~F~~~~~A~ 143 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYD---------------------R-SGRSLGTADVHFERRADAL 143 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCC---------------------T-TSSCSCCEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C-CCCEeeEEEEEeCCHHHHH
Confidence 3589999999999999999999998 899999998875 2 4688999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.|+.... ...++|+.|+|..+....
T Consensus 144 ~Ai~~ln--g~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 144 KAMKQYK--GVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HHHHHST--TCBCSSSBCEEEEESSGG
T ss_pred HHHHHhC--CCEECCEEEEEEEecCCC
Confidence 9999653 367899999998654443
No 149
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.23 E-value=4.8e-07 Score=90.09 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=65.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|.+++.+||++||+. +| +..|+|..+ + .++++++|||+|++.+.|.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~-~G-i~~v~i~~d---------------------~-~g~srGfaFV~F~~~e~A~ 100 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSP-LN-PVRVHIEIG---------------------P-DGRVTGEADVEFATHEEAV 100 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCS-CC-CSEEECCCS---------------------S-SSCSSCCCEEECSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEC---------------------C-CCCCceEEEEEeCCHHHHH
Confidence 4578999999999999999999998 77 447777664 3 3789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
.|+.+ +...+++++|+|..+...+
T Consensus 101 ~Al~~---~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 101 AAMSK---DRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHTTC---CSCSSSSCCCCCEECCCSC
T ss_pred HHHhh---CCCEECCEEEEEEECCCCC
Confidence 99943 3478999999998554443
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=6.5e-07 Score=86.35 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=64.0
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|.+||+. +|.|..|.+... +..+++++||||+|.+.++|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~---------------------~~~g~~~G~afV~F~~~~~a~ 81 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAY---------------------GPNGKATGEGFVEFRNEADYK 81 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEE---------------------CTTSSEEEEEEEEBSSSHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEE---------------------CCCCCCCeEEEEEECCHHHHH
Confidence 4579999999999999999999987 787654333332 235789999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.|+.+ +...++|++|+|..+.
T Consensus 82 ~Al~~---~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 82 AALCR---HKQYMGNRFIQVHPIT 102 (124)
T ss_dssp HHHTS---CSBCSTTSCBEEEEEC
T ss_pred HHHHh---CCCeECCcEEEEEECC
Confidence 99994 3468899999998543
No 151
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=2.5e-06 Score=78.63 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=63.6
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|++.. .+++|||+|.+.++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~---------------------------~kg~afV~f~~~~~a~ 65 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHK---------------------------DKGFGFIRLETRTLAE 65 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEET---------------------------TTTEEEEECSSSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEec---------------------------CCCEEEEEECCHHHHH
Confidence 4579999999999999999999988 79888888763 3689999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
.|+.... ...++|+.|+|..+..
T Consensus 66 ~a~~~l~--g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 66 IAKVELD--NMPLRGKQLRVRFACH 88 (99)
T ss_dssp HHHHHHT--TCCBTTBCCEEEESSC
T ss_pred HHHHHhC--CCEeCCceEEEEEcCC
Confidence 9997654 2568899999995443
No 152
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.21 E-value=6.4e-06 Score=77.42 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=64.9
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. +|.|..|+|.. + ++|||+|++.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~----------------------~------g~afV~f~~~~~ 62 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYR----------------------D------GTGVVEFVRKED 62 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEET----------------------T------TEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEec----------------------C------CEEEEEECCHHH
Confidence 345689999999999999999999987 89999998865 1 899999999999
Q ss_pred HHHHHHhhcccceeccC-----eeeeeecCCCC
Q 048783 87 ITRAMDAAEHMELFLNG-----RALKVSLGPEN 114 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~-----~~Lkv~~~~~~ 114 (1117)
|..|+.... ...++| +.|+|..+...
T Consensus 63 a~~Ai~~l~--g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 63 MTYAVRKLD--NTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp HHHHHHHSS--SEEEECTTSCEEEEEEEESSCC
T ss_pred HHHHHHHHC--cCCccCCcCcceEEEEEeCCCC
Confidence 999999764 356777 99999955443
No 153
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=8.5e-06 Score=75.07 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=60.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhcc-ccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEV-GGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~-G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
-.++|+|+|+|..++.++|+++|+..- |.|..|++ ++++|||+|.+.++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-----------------------------~~g~afV~f~~~~~A 64 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-----------------------------IRDYAFVHFSNREDA 64 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-----------------------------CSSEEEEEESSHHHH
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-----------------------------eCCeEEEEeCCHHHH
Confidence 468999999999999999999999842 77877653 245999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
..|+.... ...++|+.|+|..+.
T Consensus 65 ~~A~~~l~--g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 65 VEAMKALN--GKVLDGSPIEVTLAK 87 (99)
T ss_dssp HHHHHHHS--SEEETTEEEEEECCC
T ss_pred HHHHHHhC--CCEeCCcEEEEEECC
Confidence 99999663 357899999999443
No 154
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.19 E-value=5e-06 Score=82.80 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=66.4
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ + .++++++|||+|.+.++|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~---------------------~-~g~~~g~afV~f~~~~~A 149 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRG---------------------P-DGLSRGCAFVTFTTRAMA 149 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEEC---------------------C-CCCEEEEEEEEECCHHHH
Confidence 35679999999999999999999987 799999999875 2 367899999999999999
Q ss_pred HHHHHhhcccceecc--Ceeeeeec
Q 048783 88 TRAMDAAEHMELFLN--GRALKVSL 110 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~--~~~Lkv~~ 110 (1117)
..|+..... ..+++ +++|+|+.
T Consensus 150 ~~A~~~l~g-~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 150 QTAIKAMHQ-AQTMEGCSSPMVVKF 173 (175)
T ss_dssp HHHHHHHTT-SCCCTTCSSCCEEEE
T ss_pred HHHHHHhcC-CcccCCCCCCeEEEe
Confidence 999987753 33444 59999873
No 155
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.19 E-value=6.2e-06 Score=76.30 Aligned_cols=73 Identities=14% Similarity=0.369 Sum_probs=62.5
Q ss_pred CceeeEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 7 TSVDTQVSVGGFDR-DIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~-~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
..-.++|+|+|+|. .++.++|.++|+. .|.|..|+|. +++|||+|.+.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i~-----------------------------~g~afV~f~~~~ 68 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK-----------------------------NAFGFIQFDNPQ 68 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEEC-----------------------------SSEEEEEESSHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe-----------------------------CCEEEEEECCHH
Confidence 34568999999997 9999999999988 7999888872 579999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
+|..|+.... ...++|+.|+|..+
T Consensus 69 ~A~~Ai~~l~--g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 69 SVRDAIEXES--QEMNFGKKLILEVS 92 (97)
T ss_dssp HHHHHHHHHT--TSEETTEECEEEEC
T ss_pred HHHHHHHHcC--CCEECCEEEEEEec
Confidence 9999999653 35788999999843
No 156
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.19 E-value=4.2e-06 Score=83.04 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=65.1
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
....++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +++||||+|.+.++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~f~~~~~ 122 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGY-YGPLRSVWVARN--------------------------PPGFAFVEFEDPRD 122 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHH-HSCEEEEEECSS--------------------------SCSEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEeeC--------------------------CCcEEEEEECCHHH
Confidence 345689999999999999999999998 799999998752 68899999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeec
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSL 110 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~ 110 (1117)
|..|+..... ..++|+.|+|..
T Consensus 123 a~~A~~~l~g--~~~~g~~l~v~~ 144 (150)
T 2i2y_A 123 AADAVRELDG--RTLCGCRVRVEL 144 (150)
T ss_dssp HHHHHHHHSS--SCSSSSCCEEEE
T ss_pred HHHHHHHcCC--CEECCeEEEEEE
Confidence 9999986532 567999999984
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.19 E-value=4.5e-06 Score=85.15 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=69.5
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|.|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+.++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~---------------------~~~~~~~g~afV~f~~~~~a 169 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKD---------------------SATGLSKGYAFCEYVDINVT 169 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEEC---------------------TTTCSEEEEEEEEESSSSHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeec---------------------CCCCCcceEEEEEECCHHHH
Confidence 34689999999999999999999998 899999999875 33578899999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.... ...++|+.|+|+.+
T Consensus 170 ~~A~~~l~--g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 170 DQAIAGLN--GMQLGDKKLLVQRA 191 (198)
T ss_dssp HHHHHHHT--TCEETTEECEEEES
T ss_pred HHHHHHcC--CCEECCEEEEEEEC
Confidence 99999653 36789999999943
No 158
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.18 E-value=1e-05 Score=75.23 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=62.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|. +++|||+|.+.++|.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~-----------------------------~~~afV~f~~~~~a~ 59 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL-----------------------------KDYAFIHFDERDGAV 59 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC-----------------------------SSCEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE-----------------------------CCEEEEEeCCHHHHH
Confidence 4689999999999999999999998 7988888764 239999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+.... ...++|+.|+|..+...
T Consensus 60 ~A~~~l~--g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 60 KAMEEMN--GKDLEGENIEIVFAKPP 83 (103)
T ss_dssp HHHHHHT--TEEETTEEEEEEECCCC
T ss_pred HHHHHHC--CCccCCCEEEEEEcCCC
Confidence 9999653 25789999999965444
No 159
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.16 E-value=5.4e-06 Score=77.99 Aligned_cols=74 Identities=20% Similarity=0.392 Sum_probs=63.0
Q ss_pred CceeeEEEEeCCCcc-ccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 7 TSVDTQVSVGGFDRD-IKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~-~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
....++|+|+|+|.. ++.++|.++|+. .|.|..|+| ++++|||+|.+.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i-----------------------------~~g~afV~f~~~~ 73 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV-----------------------------HKGYAFVQYSNER 73 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE-----------------------------ETTEEEEECSSSH
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE-----------------------------eCCEEEEEECCHH
Confidence 335689999999999 999999999987 898888877 2479999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+|..|+.... ...++|+.|+|..+.
T Consensus 74 ~A~~A~~~l~--g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 74 HARAAVLGEN--GRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHHHHHT--TCEETTEECCEEESC
T ss_pred HHHHHHHHcC--CCEECCeEEEEEECC
Confidence 9999997653 257899999999553
No 160
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=6.6e-06 Score=74.47 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=64.8
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++|+|+|+|..++.++|+++|+. .|.|..|++.. ++|||+|.+.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~-----------------------------~~afV~f~~~~ 54 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVVK-----------------------------DYAFVHMEKEA 54 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEECS-----------------------------SCEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEEC-----------------------------CEEEEEECCHH
Confidence 3456789999999999999999999998 89998888762 29999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
+|..|+.... ...++|+.|+|..+...
T Consensus 55 ~a~~A~~~l~--g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 55 DAKAAIAQLN--GKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHHHHHHHHT--TCEETTEECEEEESCCC
T ss_pred HHHHHHHHhC--CCEECCcEEEEEECCCC
Confidence 9999999654 36789999999954433
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.14 E-value=5.6e-06 Score=82.03 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=66.0
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|.|+|+|..++.++|.++|+. .|.|..+++... +..++++++|||+|.+.++|.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRD---------------------KLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEc---------------------CCCCCcceEEEEEECCHHHHH
Confidence 4578999999999999999999987 899999999875 335778999999999999999
Q ss_pred HHHHhhcccceeccC--eeeeeec
Q 048783 89 RAMDAAEHMELFLNG--RALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~--~~Lkv~~ 110 (1117)
.|+..... ..++| ++|+|+.
T Consensus 146 ~A~~~l~g--~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 146 EAISALNN--VIPEGGSQPLSVRL 167 (168)
T ss_dssp HHHHHHTT--CCCTTCSSCCEEEE
T ss_pred HHHHHhcC--CEecCCCeEEEEEe
Confidence 99996643 35555 8898873
No 162
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.43 E-value=3e-07 Score=87.49 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=67.1
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEE--------EEEEecCCCCCCCCcccccccccccccCCCCCccceEEE
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWR--------CRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFV 79 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV 79 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|.. |+|..+ +..+++++||||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~---------------------~~~g~~~g~afV 62 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTD---------------------RETGKLKGEATV 62 (116)
Confidence 34689999999999999999999998 788877 666554 335788999999
Q ss_pred EecChHHHHHHHHhhcccceeccCeeeeeecCC
Q 048783 80 HFATSTYITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 80 ~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+|.+.++|..|+.... ...++|+.|+|..+.
T Consensus 63 ~f~~~~~A~~Ai~~l~--g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 63 SFDDPPSAKAAIDWFD--GKEFSGNPIKVSFAT 93 (116)
Confidence 9999999999998653 257889999998443
No 163
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=3.3e-06 Score=76.20 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=60.1
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|.. .+++||||+|.+.++|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~--------------------------~~~g~afV~f~~~~~a~ 56 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPK--------------------------PFRAFAFVTFADDQIAQ 56 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCS--------------------------SCCSCCEEECSCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEec--------------------------CCCCEEEEEECCHHHHH
Confidence 3589999999999999999999987 79988888764 27899999999999997
Q ss_pred HHHHhhcccceeccCeeeeeecC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
.| -+ ..+.++++.|+|..+
T Consensus 57 ~~---~~-~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 57 SL---CG-EDLIIKGISVHISNA 75 (88)
T ss_dssp HT---TT-CEEEETTEEEEEECC
T ss_pred HH---hc-CCceeCCEEEEEEec
Confidence 43 22 257889999999843
No 164
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.12 E-value=2.7e-06 Score=83.82 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=62.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEE--------EEEEecCCCCCCCCcccccccccccccCCCCCccceEEEE
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWR--------CRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVH 80 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~ 80 (1117)
-.++|+|+|+|..++.++|.++|+. .|.|.. +++.. .+++++||||+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~------------------------~g~~~g~afV~ 98 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMK------------------------EGRMKGQAFIG 98 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEE------------------------ETTTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEecc------------------------CCCcccEEEEE
Confidence 4579999999999999999999987 686554 33333 26899999999
Q ss_pred ecChHHHHHHHHhhcccceeccCeeeeeecC
Q 048783 81 FATSTYITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 81 F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|.+.++|..|+.... ...++|+.|+|..+
T Consensus 99 f~~~~~A~~Ai~~ln--g~~~~g~~l~V~~a 127 (143)
T 3egn_A 99 LPNEKAAAKALKEAN--GYVLFGKPMVVQFA 127 (143)
T ss_dssp CSSHHHHHHHHHHHT--TBEETTEECEEEEC
T ss_pred eCCHHHHHHHHHHhC--CCEeCCcEEEEEEC
Confidence 999999999999663 25679999999944
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.10 E-value=6.3e-06 Score=86.42 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=66.3
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|.|+|+|..++.++|+++|+. .|.|..|+|..+ ..+++++|||+|.+.++|..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d-----------------------~~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCD-----------------------ENGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-----------------------TTEEEEEEEEEESSHHHHHH
T ss_pred cccceECCcccccHHHHHHHHHhh-cCCeEEEEeecc-----------------------CCCCceEEEEEeCCHHHHHH
Confidence 468999999999999999999987 799999999875 24578999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecC
Q 048783 90 AMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|+.... ...++|+.|+|..+
T Consensus 159 Ai~~ln--g~~~~g~~i~V~~a 178 (213)
T 4f02_A 159 AIEKMN--GMLLNDRKVFVGRF 178 (213)
T ss_dssp HHHHHT--TCEETTEECEEEEC
T ss_pred HHHHhC--CCEECCEEEEEEEc
Confidence 998653 36789999999854
No 166
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.10 E-value=8.1e-06 Score=81.86 Aligned_cols=76 Identities=11% Similarity=0.186 Sum_probs=64.4
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
..-.++|+|+|+|..++.++|+++|+. +|.|..+ .. .++++++|||+|.+.++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~--~~------------------------~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV--SQ------------------------DGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE--CS------------------------SSSCCSEEEEECSSHHH
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe--cC------------------------CCCCceEEEEEECCHHH
Confidence 345689999999999999999999998 7887766 22 36789999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.... ...++|+.|+|+.+
T Consensus 149 A~~A~~~l~--g~~~~g~~i~v~~a 171 (175)
T 1fje_B 149 AEKNLEEKQ--GAEIDGRSVSLYYT 171 (175)
T ss_dssp HHHHHHHHT--EEEETTEEEEEEEC
T ss_pred HHHHHHHhC--CCEECCeEEEEEec
Confidence 999999653 36889999999844
No 167
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.09 E-value=3.1e-06 Score=84.91 Aligned_cols=100 Identities=9% Similarity=0.086 Sum_probs=70.9
Q ss_pred cCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 6 KTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 6 ~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
...-.++|+|+|+|..++.++|+++|+. .|.+..+.+.. ...++++++|||+|.+++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~~~~~~----------------------~~~~~~~g~afV~f~~~~ 65 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISE-LFAKNDLAVVD----------------------VRTGTNRKFGYVDFESAE 65 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHH-HHHHHTCCCCE----------------------EEEETTTTEEEEEESSHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEE----------------------CCCCccccEEEEEECCHH
Confidence 3446789999999999999999999998 44322211111 123578999999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeee
Q 048783 86 YITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
+|..|+.+- ...++|+.|+|..+....- + -.-..-+|.+|.+-
T Consensus 66 ~a~~A~~l~---g~~~~g~~l~v~~~~~~~~-----~-----~~~~~~~l~v~nlp 108 (175)
T 1fje_B 66 DLEKALELT---GLKVFGNEIKLEKPKGRDS-----K-----KVRAARTLLAKNLS 108 (175)
T ss_dssp HHHHHHHGG---GEEETTEEEEEECCCCSSC-----S-----TTGGGGEEEEESCC
T ss_pred HHHHHHhcC---CCEeCCeEEEEecCCCccc-----c-----ccccCCEEEEeCCC
Confidence 999999643 3678899999995443321 1 11234578888764
No 168
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=9.5e-06 Score=74.11 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=63.7
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEE-EEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCR-LKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+ |... +..+.|||+|.+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~-------------------------~~~~~afV~f~~~~~ 66 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTD-------------------------SETAVVNVTYSSKDQ 66 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCS-------------------------SSSEEEEEEESSHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecC-------------------------CCCCEEEEEECCHHH
Confidence 34689999999999999999999997 89999996 6553 112229999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|..|+.... ...++|+.|+|..+...
T Consensus 67 a~~Ai~~l~--g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 67 ARQALDKLN--GFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHT--TCBCSSCBCEEEECCCC
T ss_pred HHHHHHHhC--CCEECCcEEEEEEcCcc
Confidence 999998653 36779999999955443
No 169
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=1.9e-05 Score=72.53 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=62.7
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+ .++.++|.++|+. .|.|..|+|. +++++|||+|.+.++|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~---------------------------~~~g~afV~f~~~~~a 62 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD---------------------------PPRNCAFVTYEKMESA 62 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE---------------------------TTTTEEEEEESSHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec---------------------------CCCCEEEEEECCHHHH
Confidence 35689999996 8999999999987 8999988883 3578999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecCCCC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
..|+.... ...++|+.|+|..+...
T Consensus 63 ~~Ai~~l~--g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 63 DQAVAELN--GTQVESVQLKVNIARKQ 87 (97)
T ss_dssp HHHHHHTT--TEEETTEEEEEECCSSC
T ss_pred HHHHHHhC--CCeECCeEEEEEECCCC
Confidence 99998754 35679999999955443
No 170
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=6.1e-06 Score=75.81 Aligned_cols=75 Identities=15% Similarity=0.364 Sum_probs=62.7
Q ss_pred ceeeEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 8 SVDTQVSVGGFDR-DIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 8 ~~~~~v~v~gf~~-~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
.-.++|+|+|+|. .++.++|.++|+. .|.|..|+|. +++|||+|.+.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~-----------------------------~g~afV~f~~~~~ 57 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK-----------------------------NAFGFIQFDNPQS 57 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE-----------------------------TTEEEEEESCHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe-----------------------------CCEEEEEECCHHH
Confidence 4578999999997 9999999999998 7988888772 4699999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|..|+.... ...++|+.|+|..+...
T Consensus 58 A~~A~~~l~--g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 58 VRDAIECES--QEMNFGKKLILEVSSSN 83 (96)
T ss_dssp HHHHHHHHT--CSSCBTTTBCEEEEECC
T ss_pred HHHHHHHcC--CCeeCCcEEEEEEcCcC
Confidence 999999753 25678999999855443
No 171
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.05 E-value=7.8e-06 Score=95.68 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=69.8
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
..++|+|+|+|..++.++|.++|+. +|.|..|.|... ...+++.+||||+|.+.++|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYS---------------------KRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeecc---------------------CCCCCccceEEEeeccHHHHH
Confidence 3479999999999999999999998 899999999875 335788999999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
.|+.+.. ...|+|+.|+|..+..
T Consensus 159 ~Ai~~ln--g~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 159 SAYKHAD--GKKIDGRRVLVDVERG 181 (437)
T ss_pred HHHHHcC--CCEECCEEEEEEEeCC
Confidence 9998763 3678999999995543
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.04 E-value=8.8e-06 Score=88.70 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=65.4
Q ss_pred CceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 7 TSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 7 ~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
+.-.++|+|+|+|.+++.++|.++|+. +|.|..|+|..+ + .+++++|||+|.+.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~--~~~~g~afV~f~~~~~ 93 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKH-CGPIIHVDVADS---------------------L--KKNFRFARIEFARYDG 93 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------T--TSSSEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C--CCCcEEEEEEECCHHH
Confidence 345789999999999999999999998 899999999886 1 3368999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+.+ +...++|+.|+|...
T Consensus 94 A~~A~~~---~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 94 ALAAITK---THKVVGQNEIIVSHL 115 (292)
T ss_dssp HHHHHTT---TTCEETTEECEEEEC
T ss_pred HHHHHHh---CCcEeCCcEEEEEEC
Confidence 9999964 347889999999843
No 173
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.02 E-value=2.2e-05 Score=85.18 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=79.5
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.+.++|..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYS---------------------ERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHHH
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEee---------------------CCCCccceEEEEEECCHHHHHH
Confidence 468999999999999999999988 899999999875 3357899999999999999999
Q ss_pred HHHhhcccceeccCeeeeeecCCCCCccccCCCCCCCCcccCCeEEEEeeeec
Q 048783 90 AMDAAEHMELFLNGRALKVSLGPENPFRLNQRGGTSAPLKLPDVYVEIGSLVT 142 (1117)
Q Consensus 90 a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 142 (1117)
|+.... ...++|+.|+|..+..... + +-....-+|.+|.+-.
T Consensus 153 A~~~l~--~~~~~g~~i~v~~a~~~~~-----~----~~~~~~~~l~v~nlp~ 194 (284)
T 3smz_A 153 AKSDLL--GKPLGPRTLYVHWTDAGQL-----T----PALLHSRCLCVDRLPP 194 (284)
T ss_dssp HHHHHT--TCEETTEECEEEECCGGGC-----C----TTTTSCSEEEEECCCT
T ss_pred HHHHhC--CCEeCCcEEEEEECCCCCC-----C----cccCCccEEEEecCCc
Confidence 996553 2577999999985443321 1 2234567788888754
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.00 E-value=3.5e-05 Score=81.65 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=66.3
Q ss_pred ceeeEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 8 SVDTQVSVGGFDR-DIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 8 ~~~~~v~v~gf~~-~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
.-.++|+|+|+|. +++.++|.++|+. .|.|..|+|..+ .+++|||+|.+.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~F~~~~~ 84 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFN--------------------------KKENALVQMADGNQ 84 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCT--------------------------TSCCEEEEESCHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEEC--------------------------CCCEEEEEECCHHH
Confidence 3468999999999 9999999999987 799999999875 17899999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
|..|+.... ...++|+.|+|..+...
T Consensus 85 A~~Ai~~l~--g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 85 AQLAMSHLN--GHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHHHHT--TCBCSSSBCEEECCSCC
T ss_pred HHHHHHHhC--CCeECCeEEEEEEecCc
Confidence 999998543 25779999999855444
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.99 E-value=1.7e-05 Score=78.10 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=63.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|.|+|+|..++.++|+++|+. .|.|..+++..+ +..++++++|||+|.+.++|.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~A~ 144 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVD---------------------QVTGVSRGVGFIRFDKRIEAE 144 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEec---------------------CCCCCccceEEEEeCCHHHHH
Confidence 4578999999999999999999997 799999999875 335678999999999999999
Q ss_pred HHHHhhcccceeccCee--eeee
Q 048783 89 RAMDAAEHMELFLNGRA--LKVS 109 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~--Lkv~ 109 (1117)
.|+..... ..++|+. |+|+
T Consensus 145 ~A~~~l~g--~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 145 EAIKGLNG--QKPSGATEPITVK 165 (167)
T ss_dssp HHHHHHTT--CCCTTCSSCCEEE
T ss_pred HHHHHhcC--CccCCCccceEEE
Confidence 99996532 3566654 5554
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.97 E-value=2.1e-05 Score=78.29 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=58.8
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhc---cc-------cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEE
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENE---VG-------GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFV 79 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~---~G-------~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV 79 (1117)
.++|+|+|+|.+++.++|.++|+.. .| .|..+++. +++++|||
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------------------------~~~g~afV 56 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------------------------QDKNFAFL 56 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------------------------TTTTEEEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------------------------CCCCEEEE
Confidence 4799999999999999999999995 26 55555443 35799999
Q ss_pred EecChHHHHHHHHhhcccceeccCeeeeeecC
Q 048783 80 HFATSTYITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 80 ~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
+|.++++|..|+.+- ...++|+.|+|..+
T Consensus 57 ~f~~~~~A~~A~~~~---~~~~~g~~i~v~~~ 85 (172)
T 2g4b_A 57 EFRSVDETTQAMAFD---GIIFQGQSLKIRRP 85 (172)
T ss_dssp EESSHHHHHHHGGGT---TCEETTEECEEECC
T ss_pred EeCCHHHHHHHHHhC---CcEecCceeeecCC
Confidence 999999999999332 36789999999943
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.97 E-value=4.7e-05 Score=77.54 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=58.9
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhcc---c-------cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEE
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEV---G-------GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAF 78 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~---G-------~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af 78 (1117)
..++|+|+|+|.+++.++|.++|+..- | .|..+.+. +++++||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------------------------~~~g~af 55 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------------------------QDKNFAF 55 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------------------------TTTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------------------------CCCCEEE
Confidence 358999999999999999999999851 4 34444332 4579999
Q ss_pred EEecChHHHHHHHHhhcccceeccCeeeeeecCC
Q 048783 79 VHFATSTYITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 79 V~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
|+|.+.++|..|+.+ +...++|+.|+|..+.
T Consensus 56 V~F~~~~~A~~Al~l---~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 56 LEFRSVDETTQAMAF---DGIIFQGQSLKIRRPH 86 (198)
T ss_dssp EEESCSHHHHHHGGG---TTEEETTEEEEEECCC
T ss_pred EEeCCHHHHHHHHHh---cCCEEcCceEEEeCCC
Confidence 999999999999943 2367899999999543
No 178
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.96 E-value=2.2e-05 Score=72.50 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=66.5
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-..-|+|+|++..++.++|.+.|.+ .|.|-.|+|.. +++||||.|.+++.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~---------------------------~kGfaFVey~~~~eA~ 57 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL---------------------------NQGIALCKYTTREEAN 57 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET---------------------------TTTEEEEEESSHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC---------------------------CCcEEEEEECCHHHHH
Confidence 3567899999999999999999998 89999999853 5899999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+.+.. ..-++|+.|+|..+.++
T Consensus 58 ~Ai~~Ln--~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 58 KAQMALN--NCVLANTTIFAESPSEN 81 (89)
T ss_dssp HHHHHHT--TEEETTEEEEEECCCHH
T ss_pred HHHHHhc--CCEECCcEEEEEECCHH
Confidence 9999774 37899999999866543
No 179
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.93 E-value=2e-05 Score=80.89 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=65.5
Q ss_pred eeEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 10 DTQVSVGGFDR-DIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~~-~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.++|+|+|+|. .++.++|.++|+. .|.|..|++..+ .+++|||+|.+.++|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~f~~~~~a~ 55 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFN--------------------------KKENALVQMADGNQAQ 55 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTT--------------------------CSSCCEEECTTTHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeC--------------------------CCCEEEEEECCHHHHH
Confidence 47999999999 9999999999987 798888888764 1789999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
.|+.... ...++|+.|+|..+.....
T Consensus 56 ~A~~~l~--~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 56 LAMSHLN--GHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp HHHHHHT--TCCCSSCCCEEEECCCCSC
T ss_pred HHHHHhC--CCeecCeEEEEEEecCCCc
Confidence 9998543 2567999999986655443
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.92 E-value=2.1e-05 Score=85.24 Aligned_cols=78 Identities=15% Similarity=0.282 Sum_probs=65.3
Q ss_pred ceeeEEEEeCCCccccHHHHH----HHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 8 SVDTQVSVGGFDRDIKAVDLV----KYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~----~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
.-.++|+|+|+|..++.++|+ ++|+. .|.|..|+|..+ ++++++|||+|.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~~------------------------~~~~g~afV~f~~ 61 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSRS------------------------LKMRGQAFVIFKE 61 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcCC------------------------CCcceEEEEEECC
Confidence 346899999999999999987 66654 789999888754 6789999999999
Q ss_pred hHHHHHHHHhhcccceeccCeeeeeecCC
Q 048783 84 STYITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.++|..|+.... ...++|+.|+|..+.
T Consensus 62 ~~~a~~A~~~l~--g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 62 VSSATNALRSMQ--GFPFYDKPMRIQYAK 88 (282)
T ss_pred HHHHHHHHHHhc--CCeeCCcEEEEEEec
Confidence 999999997663 367788999998553
No 181
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.90 E-value=4.5e-05 Score=78.04 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=65.3
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-+.+|+|+|++..++.++|.+.|+. .|.|.+++|.+. +++++|||+|.+.++|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k-------------------------~~rgfAFVeF~d~~~A~ 98 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK-------------------------NNQFQALLQYADPVSAQ 98 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEES-------------------------SSCEEEEEEESCHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC-------------------------CCCCEEEEEECCHHHHH
Confidence 4677999999999999999999998 599999999764 36789999999999999
Q ss_pred HHHHhhcccceecc-CeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLN-GRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~-~~~Lkv~~~~~~ 114 (1117)
.|+..-. +..+++ ++.|+|.-+-..
T Consensus 99 ~Ai~~Ln-G~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 99 HAKLSLD-GQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp HHHHHST-TBCSSSSCSCEEEEECSSS
T ss_pred HHHHHhC-CCEecCCCcEEEEEEecCC
Confidence 9999764 344554 589999854433
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.90 E-value=1.7e-05 Score=75.68 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=58.1
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-..+|+|+|+|..++.++|+++|+. +|.|..|.|.. + +||||+|++.+.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~----------------------~------g~afV~f~~~~~a~ 65 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYR----------------------D------GTGVVEFVRKEDMT 65 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECT----------------------T------SEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEec----------------------C------CEEEEEECCHHHHH
Confidence 4578999999999999999999997 79999888864 1 89999999999999
Q ss_pred HHHHhhcccceeccCee-----eeee
Q 048783 89 RAMDAAEHMELFLNGRA-----LKVS 109 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~-----Lkv~ 109 (1117)
.|+..... ..++|+. ++|.
T Consensus 66 ~Ai~~l~g--~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 66 YAVRKLDN--TKFRSHEGETAYIRVK 89 (115)
T ss_dssp HHHHHHTT--CBCCCTTSCCCBCEEE
T ss_pred HHHHHhCC--CEECCcEeeeEEEEec
Confidence 99996642 4667766 6666
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.90 E-value=2.3e-05 Score=84.88 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=65.9
Q ss_pred ceeeEEEEeCCCccc---------cHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEE
Q 048783 8 SVDTQVSVGGFDRDI---------KAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAF 78 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~---------~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af 78 (1117)
.-.+||+|||++..+ +.++|.++|+. .|.|..|+|.. ++++||
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~---------------------------~kG~AF 183 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVE---------------------------SKNCGF 183 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEG---------------------------GGTEEE
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEEC---------------------------CCCEEE
Confidence 356899999999998 79999999998 79999998874 368999
Q ss_pred EEecChHHHHHHHHhhcccceec----------cCeeeeeecCCCCCc
Q 048783 79 VHFATSTYITRAMDAAEHMELFL----------NGRALKVSLGPENPF 116 (1117)
Q Consensus 79 V~F~~~e~a~~a~~~a~~~~l~~----------~~~~Lkv~~~~~~~~ 116 (1117)
|+|.+.++|..|+.+.....|++ +|+.|+|.-+-++|.
T Consensus 184 V~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 184 VKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp EEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 99999999999999876443433 899999998877764
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.88 E-value=2.6e-05 Score=82.00 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=63.6
Q ss_pred eeEEEEeCCC-ccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 10 DTQVSVGGFD-RDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~-~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.+||+|+|+| ..++.++|.+.|+. .|.|..|+|..+ .+++|||+|.+.++|.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~--------------------------~~g~afV~f~~~~~A~ 56 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKS--------------------------KPGAAMVEMADGYAVD 56 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTT--------------------------STTCEEEEESSHHHHH
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecC--------------------------CCCEEEEEECCHHHHH
Confidence 4689999999 89999999999986 899999988643 3799999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
.|+.... ...++|+.|+|..+.
T Consensus 57 ~Ai~~ln--g~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 57 RAITHLN--NNFMFGQKMNVCVSK 78 (205)
T ss_dssp HHHHHHT--TCEETTEECEEEECS
T ss_pred HHHHHhC--CCEECCceEEEEEcc
Confidence 9998664 256788999999553
No 185
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=4.3e-05 Score=73.75 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=63.1
Q ss_pred eeeEEEE--eCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 9 VDTQVSV--GGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 9 ~~~~v~v--~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
.+++++| ||++..++.++|.++|+. .|.|..|.+.+ .++||||+|++.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~---------------------------~rgfaFV~f~~~~~ 75 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP---------------------------NKPYSFARYRTTEE 75 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCT---------------------------TCSCEEEEESSHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC---------------------------CCCEEEEEECCHHH
Confidence 4678999 889999999999999998 79998876642 26899999999999
Q ss_pred HHHHHHhhcccce-e-c-cCeeeeeecCCCCCc
Q 048783 87 ITRAMDAAEHMEL-F-L-NGRALKVSLGPENPF 116 (1117)
Q Consensus 87 a~~a~~~a~~~~l-~-~-~~~~Lkv~~~~~~~~ 116 (1117)
|..|+......++ - + +|++|.|.-.-.-|.
T Consensus 76 A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 76 SKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp HHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred HHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 9999997654334 1 2 578888875444443
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.82 E-value=4.9e-05 Score=82.16 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=62.8
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.++|+|+|+|.+++.++|.++|+. .|.|..|+|.. ++++|||+|.+.++|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~---------------------------~kg~afV~f~~~~~A 71 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFINR---------------------------DRGFGFIRLESRTLA 71 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEET---------------------------TTTEEEEECSSHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEeC---------------------------CCcEEEEEECCHHHH
Confidence 35579999999999999999999977 89998888853 368999999999999
Q ss_pred HHHHHhhcccceeccCeeeeeecC
Q 048783 88 TRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
..|+.... ...++|+.|+|..+
T Consensus 72 ~~A~~~l~--g~~i~g~~l~v~~a 93 (261)
T 3sde_A 72 EIAKAELD--GTILKSRPLRIRFA 93 (261)
T ss_dssp HHHHHHHT--TCEETTEECEEEEC
T ss_pred HHHHHHcC--CcEECCceeEeeec
Confidence 99998543 25678999999843
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.82 E-value=3.3e-05 Score=84.15 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=65.4
Q ss_pred eeeEEEEeCCCcc-ccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCC-CCCccceEEEEecChHH
Q 048783 9 VDTQVSVGGFDRD-IKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDD-YEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 9 ~~~~v~v~gf~~~-~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~afV~F~~~e~ 86 (1117)
..++|.|+|+|.. ++.++|+++|+. .|.|..|+|..+ .. .++++++|||+|.+.++
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~---------------------~~~tg~~~g~afV~F~~~~~ 266 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAG---------------------QKEHSFNNCCAFMVFENKDS 266 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSC---------------------CC---CCCEEEEEEESSHHH
T ss_pred CCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEec---------------------CCcCCCCceEEEEEeCCHHH
Confidence 4579999999999 999999999997 799999988764 11 26789999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|..|+ ... ...++|+.|+|+.+
T Consensus 267 A~~A~-~l~--g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 267 AERAL-QMN--RSLLGNREISVSLA 288 (292)
T ss_dssp HHHHG-GGT--TEEETTEEEEEEEC
T ss_pred HHHHH-Hhc--CCEECCcEEEEEEe
Confidence 99999 432 36789999999944
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.78 E-value=5e-05 Score=82.12 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=66.7
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITR 89 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~ 89 (1117)
.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +.++++++|||+|.+.++|..
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~----------------------~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVD----------------------DRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE----------------------TTSCEEEEEEEEESSHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeC----------------------CCCCcCcEEEEEeCCHHHHHH
Confidence 368999999999999999999976 899999999875 246799999999999999999
Q ss_pred HHHhhcccceec--cCeeeeeecCC
Q 048783 90 AMDAAEHMELFL--NGRALKVSLGP 112 (1117)
Q Consensus 90 a~~~a~~~~l~~--~~~~Lkv~~~~ 112 (1117)
|+.....+.+++ .++++.|....
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEECC
T ss_pred HHHHhcCCeEEecCCCceEEEeecc
Confidence 999874444433 47888888443
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.77 E-value=4.1e-05 Score=83.10 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=68.8
Q ss_pred ceeeEEEEeCCCccc-cHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHH
Q 048783 8 SVDTQVSVGGFDRDI-KAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTY 86 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~-~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~ 86 (1117)
.-.++|+|+|+|..+ +.++|+++|+. .|.|..|+|..+ ..++++++|||+|.+.++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~----------------------~~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACG----------------------QDGQLKGFAVLEYETAEM 238 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEEC----------------------SSCCEEEEEEEECSSHHH
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEEC----------------------CCCCcccEEEEEeCCHHH
Confidence 456899999999996 89999999997 799999998875 246789999999999999
Q ss_pred HHHHHHhhcccceeccCeeeeeecCCC
Q 048783 87 ITRAMDAAEHMELFLNGRALKVSLGPE 113 (1117)
Q Consensus 87 a~~a~~~a~~~~l~~~~~~Lkv~~~~~ 113 (1117)
|..|+.... ...++|+.|+|+.+..
T Consensus 239 A~~A~~~l~--g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 239 AEEAQQQAD--GLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHHHHHHHT--TCEETTEECEEEECCS
T ss_pred HHHHHHHhC--CCccCCeEEEEEEecC
Confidence 999999653 2567999999995533
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.71 E-value=0.00018 Score=68.05 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred ceeeEEEEeCCCc-----cccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCC-CCCccceEEEEe
Q 048783 8 SVDTQVSVGGFDR-----DIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDD-YEKVEPHAFVHF 81 (1117)
Q Consensus 8 ~~~~~v~v~gf~~-----~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~afV~F 81 (1117)
..+++|.|.|+-. ..+.+||++.|+. .|.|..|+|... ++ ..+++++|||+|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~---------------------~~~~~~~~G~~FV~f 63 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEI---------------------PGAPDDEAVRIFLEF 63 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEEC---------------------SSCCTTTSEEEEEEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecC---------------------CCCCCCCcEEEEEEE
Confidence 4578899999963 2467999999974 899999999875 11 257899999999
Q ss_pred cChHHHHHHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 82 ATSTYITRAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 82 ~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
.++++|..|+.... .-+|+|+.|+|.....+.+
T Consensus 64 ~~~~~A~~Ai~~ln--G~~~~Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 64 ERVESAIKAVVDLN--GRYFGGRVVKACFYNLDKF 96 (105)
T ss_dssp SSHHHHHHHHHHHT--TCEETTEECEEEECCHHHH
T ss_pred CCHHHHHHHHHHHC--CCEECCcEEEEEEcCHHHh
Confidence 99999999998763 2578999999997665543
No 191
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.70 E-value=6e-05 Score=72.84 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=61.3
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+ .++.++|.++|+. .|.|..|+|. +++++|||+|.+.++|.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~---------------------------~~kg~aFV~f~~~~~A~ 87 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD---------------------------PPRNCAFVTYEKMESAD 87 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE---------------------------TTTTEEEEECSSHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe---------------------------CCCCEEEEEECCHHHHH
Confidence 4689999996 5999999999987 8988877774 36789999999999999
Q ss_pred HHHHhhcccceeccCeeeeeecCCCC
Q 048783 89 RAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.|+..... ..++|+.|+|..+...
T Consensus 88 ~Ai~~lng--~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 88 QAVAELNG--TQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHHHHHTT--CBCSSCBCEEEECCSS
T ss_pred HHHHHhCC--CEECCeEEEEEEeCCC
Confidence 99976532 4679999999955444
No 192
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.67 E-value=4.3e-05 Score=72.00 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=57.9
Q ss_pred EeCCCccccHHHHHHHH-----------HhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 15 VGGFDRDIKAVDLVKYL-----------ENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 15 v~gf~~~~~a~~l~~~l-----------E~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
+.|.+..++.++|.+.+ ++..|.|..|+|... +..+++++|||+|.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~----------------------~~~~~~G~~fV~f~~ 77 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN----------------------LGDHLVGNVYVKFRR 77 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS----------------------SSSSSEEEEEEEESC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC----------------------CCCCccEEEEEEECC
Confidence 56777777888777655 256899999999764 235799999999999
Q ss_pred hHHHHHHHHhhcccceeccCeeeeeecCC
Q 048783 84 STYITRAMDAAEHMELFLNGRALKVSLGP 112 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~ 112 (1117)
+++|..|+.... .-.|+|+.|+|...|
T Consensus 78 ~~~A~~A~~~ln--g~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 78 EEDAEKAVIDLN--NRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHT--TCEETTEECCEEECC
T ss_pred HHHHHHHHHHHC--CCEECCEEEEEEEcC
Confidence 999999998763 257999999997543
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.60 E-value=0.00013 Score=79.01 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=62.6
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|... .+++|||+|.+.++|.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~--------------------------~~g~afV~f~~~~~A~ 258 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPG--------------------------RHDIAFVEFDNEVQAG 258 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecC--------------------------CCcEEEEEeCCHHHHH
Confidence 4588999999999999999999997 699999999864 1579999999999999
Q ss_pred HHHHhhcccceecc-Ceeeeeec
Q 048783 89 RAMDAAEHMELFLN-GRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~-~~~Lkv~~ 110 (1117)
.|+..... ..++ |+.|+|+-
T Consensus 259 ~A~~~l~g--~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 259 AARDALQG--FKITQNNAMKISF 279 (282)
T ss_pred HHHHHcCC--cEeCCCCEEEEEE
Confidence 99997642 4555 99999973
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.57 E-value=8.2e-05 Score=76.23 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=61.4
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVG-GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.++|.|+|+|..++.++|+++|+.. | .|..|+|... .+++|||+|.+.++|.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~--------------------------~~g~afV~f~~~~~A~ 172 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK--------------------------DRKMALIQMGSVEEAV 172 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHT-TSCCCEEEESST--------------------------TSSCEEEECSSHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHc-CCCceEEEEEeC--------------------------CCcEEEEEeCCHHHHH
Confidence 6899999999999999999999995 9 8888888643 2689999999999999
Q ss_pred HHHHhhcccceecc-Ceeeeeec
Q 048783 89 RAMDAAEHMELFLN-GRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~-~~~Lkv~~ 110 (1117)
.|+..... ..++ |+.|+|+.
T Consensus 173 ~A~~~l~g--~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 173 QALIDLHN--HDLGENHHLRVSF 193 (198)
T ss_dssp HHHHHHTS--SCCSSCCSCCEEE
T ss_pred HHHHHhcC--CccCCCCeEEEEe
Confidence 99996642 3456 99999983
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.56 E-value=0.00016 Score=76.60 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=61.6
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVG-GVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.++|+|+|+|..++.++|+++|+.. | .|..|++... .+++|||+|.+.++|.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~~--------------------------~~g~afV~f~~~~~A~ 203 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK--------------------------DRKMALIQMGSVEEAV 203 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT-SCCEEEEEECSS--------------------------STTCEEEEESSHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHc-CCCeeEEEEEEC--------------------------CCcEEEEEECCHHHHH
Confidence 5899999999999999999999995 9 8988888542 3689999999999999
Q ss_pred HHHHhhcccceecc-Ceeeeeec
Q 048783 89 RAMDAAEHMELFLN-GRALKVSL 110 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~-~~~Lkv~~ 110 (1117)
.|+..... ..++ |+.|+|+-
T Consensus 204 ~Ai~~l~g--~~~~~g~~l~v~~ 224 (229)
T 2adc_A 204 QALIDLHN--HDLGENHHLRVSF 224 (229)
T ss_dssp HHHHHHTT--CBSSSSCBCEEEE
T ss_pred HHHHHHCC--CccCCCCeEEEEE
Confidence 99996532 4556 99999983
No 196
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.45 E-value=0.00068 Score=66.84 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=63.7
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccce-EEEEecChHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPH-AFVHFATSTYI 87 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-afV~F~~~e~a 87 (1117)
-+-.|+|+|.+..++.++|.+.|+. .|.|.+|+|.+. .+++ |||+|.+.++|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~--------------------------~~gfqAFVef~~~~~A 79 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK--------------------------NNQFQALLQYADPVSA 79 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEE--------------------------TTEEEEEEEESCHHHH
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcC--------------------------CCCcEEEEEECCHHHH
Confidence 4567889999999999999999997 799999988764 2466 99999999999
Q ss_pred HHHHHhhcccceecc-CeeeeeecCCCCC
Q 048783 88 TRAMDAAEHMELFLN-GRALKVSLGPENP 115 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~-~~~Lkv~~~~~~~ 115 (1117)
..|+..-. +.-++| ...|+|.-+.-..
T Consensus 80 ~~Ai~~Ln-G~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 80 QHAKLSLD-GQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHHHHHT-TCEEETTEEEEEEEECSCSS
T ss_pred HHHHHHcC-CCeecCCCcEEEEEecCCCc
Confidence 99999874 345665 4789988544333
No 197
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.39 E-value=0.00087 Score=65.46 Aligned_cols=73 Identities=21% Similarity=0.113 Sum_probs=59.2
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccce-EEEEecChHHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPH-AFVHFATSTYIT 88 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-afV~F~~~e~a~ 88 (1117)
+-.|+|+|++..++.++|.+.|+. .|.|..|+|... .++ |||+|.+.++|.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~---------------------------~Gf~aFVef~~~~~A~ 76 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR---------------------------NGIQAMVEFESVLCAQ 76 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES---------------------------SSEEEEEEESSHHHHH
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC---------------------------CCCEEEEEECCHHHHH
Confidence 345789999999999999999998 799999998542 275 999999999999
Q ss_pred HHHHhhcccceeccC-eeeeeecC
Q 048783 89 RAMDAAEHMELFLNG-RALKVSLG 111 (1117)
Q Consensus 89 ~a~~~a~~~~l~~~~-~~Lkv~~~ 111 (1117)
.|+.... +.-++|+ ..|+|.-+
T Consensus 77 ~A~~~Ln-G~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 77 KAKAALN-GADIYAGCCTLKIEYA 99 (124)
T ss_dssp HHHHHHT-TCCCBTTBSEEEEECC
T ss_pred HHHHHhC-CCEecCCCeEEEEEEe
Confidence 9999764 3345554 68999843
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.28 E-value=0.00068 Score=64.07 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=60.1
Q ss_pred ceeeEEEEeCCCccc-----------cHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccce
Q 048783 8 SVDTQVSVGGFDRDI-----------KAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPH 76 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~-----------~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (1117)
...++|.|.|+-... +.++|+++|+. .|.|..|.|. + ..++++
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i~-~------------------------~~~~G~ 66 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLLF-D------------------------RHPDGV 66 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEEE-T------------------------TCTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEEe-c------------------------CCCCEE
Confidence 457889999984332 24789999986 8999888773 2 237899
Q ss_pred EEEEecChHHHHHHHHhhcccceeccCeeeeeecC
Q 048783 77 AFVHFATSTYITRAMDAAEHMELFLNGRALKVSLG 111 (1117)
Q Consensus 77 afV~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~ 111 (1117)
|||+|.+.++|..|+.... ...++|+.|+|...
T Consensus 67 afV~f~~~~~A~~Ai~~ln--g~~~~gr~l~v~~a 99 (112)
T 2dit_A 67 ASVSFRDPEEADYCIQTLD--GRWFGGRQITAQAW 99 (112)
T ss_dssp EEEECSCHHHHHHHHHHST--TCEETTEECEEEEC
T ss_pred EEEEECCHHHHHHHHHHcC--CCEECCcEEEEEEe
Confidence 9999999999999998663 35789999999954
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.24 E-value=0.0003 Score=73.90 Aligned_cols=62 Identities=2% Similarity=0.057 Sum_probs=52.9
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhccccE--EEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEVGGV--WRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~G~v--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.++|+|+|+|.+++.++|+++|+. .|.| ..+++..+ ..+++++|||+|.+.+.|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~~~-----------------------~~~~~g~gfV~f~~~~~A 178 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKVFSG-----------------------KSERSSSGLLEWDSKSDA 178 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEECSC-----------------------CSSSSEEEEEECSSHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEEcC-----------------------CCCCceEEEEEeCCHHHH
Confidence 468999999999999999999998 8887 77777654 134569999999999999
Q ss_pred HHHHHhhc
Q 048783 88 TRAMDAAE 95 (1117)
Q Consensus 88 ~~a~~~a~ 95 (1117)
..|+....
T Consensus 179 ~~Ai~~ln 186 (205)
T 3tyt_A 179 LETLGFLN 186 (205)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99998764
No 200
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.0012 Score=61.79 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=59.5
Q ss_pred ceeeEEEEeCCCccccHHHHH----HHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 8 SVDTQVSVGGFDRDIKAVDLV----KYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~----~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
.+.|+|+|+|+|-.++.++|+ +.|++.=|.|-.+ . + ++|||.|.+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t------------------------g---G~AfV~F~~ 55 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T------------------------G---CSAILRFIN 55 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C------------------------T---TCEEEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e------------------------c---CEEEEEECC
Confidence 466779999999999999866 5666632566444 2 1 999999999
Q ss_pred hHHHHHHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 84 STYITRAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
.|+|+.|+..... --+.|++++|+-+..++.
T Consensus 56 ~esA~~A~~~l~G--~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 56 QDSAERAQKRMEN--EDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp HHHHHHHHHHHTT--CCSSSSCCEEESSCCSCC
T ss_pred HHHHHHHHHHhcC--CccCCceEEEEecCCCcc
Confidence 9999999987643 467799999997766654
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.001 Score=62.43 Aligned_cols=62 Identities=27% Similarity=0.209 Sum_probs=51.8
Q ss_pred ccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHHhhcccce
Q 048783 20 RDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMEL 99 (1117)
Q Consensus 20 ~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~~a~~~~l 99 (1117)
..++.++|.++|+. .|.|..|+|.. ++++||||+|.+.++|..|+.. ..
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~~--------------------------~~rGfaFVeF~~~~~A~~Ai~~-~~--- 75 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLSS--------------------------KKPGTAVVEFATVKAAELAVQN-EV--- 75 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEES--------------------------SSSSEEEEEESCHHHHHHHHHT-CC---
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEcc--------------------------CCCCEEEEEECCHHHHHHHHHh-cC---
Confidence 45889999999988 89999988862 5789999999999999999987 22
Q ss_pred eccCeeeeeecCC
Q 048783 100 FLNGRALKVSLGP 112 (1117)
Q Consensus 100 ~~~~~~Lkv~~~~ 112 (1117)
-+.+++|+|.-+.
T Consensus 76 ~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 76 GLVDNPLKISWLE 88 (100)
T ss_dssp BCSSSBCEEECSS
T ss_pred CCCCCeEEEEEcc
Confidence 2578999998443
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.07 E-value=0.0016 Score=61.39 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=62.1
Q ss_pred eeEEEEeCC--Ccccc--------HHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEE
Q 048783 10 DTQVSVGGF--DRDIK--------AVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFV 79 (1117)
Q Consensus 10 ~~~v~v~gf--~~~~~--------a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV 79 (1117)
++.|.+.|. |..+. .+||++.++. .|.|..|+|... +.+ ...+++++|||
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~---~~~----------------~~~~~~G~~fV 64 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRP---VDG----------------VEVPGCGKIFV 64 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCC---BTT----------------BCCTTTTEEEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEecc---CCC----------------CCcCCcEEEEE
Confidence 567778886 33333 3577777774 799999988764 111 01368899999
Q ss_pred EecChHHHHHHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 80 HFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 80 ~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
+|+++++|..|+.... .-+|+|+.|+|+..+++.+
T Consensus 65 ~f~~~~~A~~Ai~~ln--G~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 65 EFTSVFDCQKAMQGLT--GRKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp EESSHHHHHHHHHHHT--TCEETTEECEEEEECHHHH
T ss_pred EECCHHHHHHHHHHhC--CCEeCCCEEEEEEeCHHHH
Confidence 9999999999998774 3588999999996655544
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.78 E-value=0.0022 Score=72.87 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=52.6
Q ss_pred ceeeEEEEeC--CCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 8 SVDTQVSVGG--FDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 8 ~~~~~v~v~g--f~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.-+++++||| ++..++.++|.+.|+. .|.|..+.+.+ +++||||+|.+.|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~---------------------------~kgfaFV~f~~~~ 67 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP---------------------------NKPYSFARYRTTE 67 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT---------------------------TCSEEEEEESSHH
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC---------------------------CCCEEEEEECCHH
Confidence 3568999988 5788999999999999 69997765421 4689999999999
Q ss_pred HHHHHHHhhcccce
Q 048783 86 YITRAMDAAEHMEL 99 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l 99 (1117)
.|+.|++.....++
T Consensus 68 ~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 68 ESKRAYVTLNGKEV 81 (345)
T ss_dssp HHHHHHHHTTTCEE
T ss_pred HHHHHHHHhCCCcc
Confidence 99999998764444
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.77 E-value=0.0032 Score=60.75 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=64.8
Q ss_pred eeeEEEEeCCCcc-----ccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC
Q 048783 9 VDTQVSVGGFDRD-----IKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT 83 (1117)
Q Consensus 9 ~~~~v~v~gf~~~-----~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~ 83 (1117)
-+++|.+.|.-.. ...+||++.++. .|.|..|.|... + .+ .....+++++|||+|++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~--~-~~--------------~~~~~~~~G~~FV~F~~ 80 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQE--K-QG--------------EEEDAEIIVKIFVEFSI 80 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEE--E-ES--------------SSTTCEEEEEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeec--C-CC--------------cccCCcceEEEEEEECC
Confidence 3678899997321 235778888874 799999999875 0 00 01135688999999999
Q ss_pred hHHHHHHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 84 STYITRAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 84 ~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
+++|..|+.... .-+|+|+.|+|...+++.+
T Consensus 81 ~e~A~~Ai~~Ln--Gr~f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 81 ASETHKAIQALN--GRWFAGRKVVAEVYDQERF 111 (118)
T ss_dssp HHHHHHHHHHHT--TCEETTEECEEEEECHHHH
T ss_pred HHHHHHHHHHHC--CCEECCcEEEEEEcChHhc
Confidence 999999999764 2589999999996665544
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.93 E-value=0.0078 Score=57.75 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=54.8
Q ss_pred eeEEEEeCCCcccc------HH----HHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEE
Q 048783 10 DTQVSVGGFDRDIK------AV----DLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFV 79 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~------a~----~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV 79 (1117)
++.|.+.|.=.... -+ ||++.++ ..|.|..|.|... .++++|||
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~-------------------------~~~G~~fV 60 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKN-------------------------SAQGNVYV 60 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTT-------------------------CTTCCEEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecC-------------------------CCcEEEEE
Confidence 45566766533222 23 4455554 3578888877542 25899999
Q ss_pred EecChHHHHHHHHhhcccceeccCeeeeeecCCCCC
Q 048783 80 HFATSTYITRAMDAAEHMELFLNGRALKVSLGPENP 115 (1117)
Q Consensus 80 ~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~ 115 (1117)
+|.+.++|..|+.... .-+|+|+.|+|...+.+.
T Consensus 61 ~f~~~e~A~~Ai~~ln--G~~f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 61 KCPSIAAAIAAVNALH--GRWFAGKMITAAYVPLPT 94 (114)
T ss_dssp ECSSHHHHHHHHHHHT--TCEETTEECEEEEECHHH
T ss_pred EECCHHHHHHHHHHhC--CCEECCEEEEEEEEcHHH
Confidence 9999999999998764 358999999999666554
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.86 E-value=0.017 Score=56.27 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=62.8
Q ss_pred ceeeEEEEeCCCcc-ccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecC-hH
Q 048783 8 SVDTQVSVGGFDRD-IKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFAT-ST 85 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~-~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~-~e 85 (1117)
....-|+|+|.+.. ++.++|+++|.. .|.|--|.+... ...|||.|.+ ++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g---------------------------~~tgfVrf~~~~~ 67 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRG---------------------------AKEGIILFKEKAK 67 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTT---------------------------CSEEEEEESSCHH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecC---------------------------CCEEEEEECCChH
Confidence 34567999999999 999999999997 899888887654 2249999999 78
Q ss_pred HHHHHHHhhcccceeccCeeeeee
Q 048783 86 YITRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
+|..|+..+..+.+-+.++.+++.
T Consensus 68 ~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 68 EALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp HHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred HHHHHHHHhhcCCcEEeCcEEEEE
Confidence 999999988777899999888876
No 207
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.36 E-value=0.054 Score=51.24 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=62.8
Q ss_pred cccCceeeEEEEeCCCccccHHHHHHHHHhc--cccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEe
Q 048783 4 REKTSVDTQVSVGGFDRDIKAVDLVKYLENE--VGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHF 81 (1117)
Q Consensus 4 ~~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~--~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F 81 (1117)
+....+..+|.|.|+|..+..+-|.-|||+. -|.+-.-.++.. . .-|.|.|
T Consensus 2 ~~~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------------------------~--~~AvItF 54 (104)
T 2dhx_A 2 SSGSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------------------------G--CGGVLTF 54 (104)
T ss_dssp CCSCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------------------------T--TEEEEEE
T ss_pred CCCccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------------------------C--CcEEEEE
Confidence 3455678899999999999999999999995 354333333332 1 6789999
Q ss_pred cChHHHHHHHHhhcccceeccCeeeeeecCCCC
Q 048783 82 ATSTYITRAMDAAEHMELFLNGRALKVSLGPEN 114 (1117)
Q Consensus 82 ~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~ 114 (1117)
.+++.|..++... ...|++..|+|.+.+..
T Consensus 55 ~d~~va~rVL~k~---~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 55 REPADAERVLAQA---DHELHGAQLSLRPAPPR 84 (104)
T ss_dssp SSHHHHHHHHTCS---CCBSSSSBCEEEECCCC
T ss_pred cChHHHHHHhcCC---cceecCeEEEEEcCCCC
Confidence 9999999998765 47899999999964443
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=93.25 E-value=0.091 Score=55.00 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=38.5
Q ss_pred CCCccceEEEEecChHHHHHHHHhhcccceeccCeeeeeecCCCCCc
Q 048783 70 YEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPF 116 (1117)
Q Consensus 70 ~~~~~~~afV~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~ 116 (1117)
.+++++++||+|.+.++|..|+.... .-+|+|+.|.|...+++.+
T Consensus 171 ~~~~~G~~fv~f~~~~~a~~a~~~l~--gr~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 171 DAEIIVKIFVEFSIASETHKAIQALN--GRWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHT--TCBSSSSBCEEEECCHHHH
T ss_pred CcCceeEEEEEECCHHHHHHHHHHhc--CceECCeEEEEEEcCHHHh
Confidence 45899999999999999999999763 2589999999997777665
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.25 E-value=0.29 Score=45.39 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=45.7
Q ss_pred HHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHHhhcccceeccCe
Q 048783 25 VDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGR 104 (1117)
Q Consensus 25 ~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~~a~~~~l~~~~~ 104 (1117)
.+|.+-|.+ .|.|.-+|+-+. + +||.|.+.++|..|+++-| .-++|+
T Consensus 30 ~~L~~~F~~-~G~Vi~vr~~~d-------------------------~----~fVtF~d~~sAlaAi~mnG---~~v~Gr 76 (91)
T 2dnr_A 30 DELLQQFAS-FGEVILIRFVED-------------------------K----MWVTFLEGSSALNVLSLNG---KELLNR 76 (91)
T ss_dssp HHHHHHHHT-TCCEEEEEECSS-------------------------S----EEEEESSHHHHHHGGGGTT---CEETTE
T ss_pred HHHHHHHHh-CCCeEEEEEecC-------------------------C----EEEEECChHHHHHHHhcCC---eEeCCe
Confidence 457777776 788888888774 1 8999999999999999654 579999
Q ss_pred eeeeecCCCC
Q 048783 105 ALKVSLGPEN 114 (1117)
Q Consensus 105 ~Lkv~~~~~~ 114 (1117)
.|||.+...+
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999955443
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.23 E-value=0.26 Score=46.02 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=45.8
Q ss_pred HHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHHhhcccceeccCe
Q 048783 25 VDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMDAAEHMELFLNGR 104 (1117)
Q Consensus 25 ~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~~a~~~~l~~~~~ 104 (1117)
.+|++.|.+ .|.|.-+|+-+. + +||.|.+.++|..|+++-+ .-++|+
T Consensus 39 ~~L~~~F~~-~G~Vilvr~v~d-------------------------~----~fVtF~d~~sAl~AI~ldG---~~v~Gr 85 (95)
T 1ufw_A 39 TELMQTLGS-YGTIVLVRINQG-------------------------Q----MLVTFADSHSALSVLDVDG---MKVKGR 85 (95)
T ss_dssp HHHHHHHHH-HSCCSEEEEETT-------------------------E----EEEECSCSHHHHHHHHGGG---SEETTE
T ss_pred HHHHHHHHH-CCCEEEEEEecC-------------------------c----EEEEEcChHHHHHHHhcCC---eeeCCe
Confidence 458888887 899888888875 1 9999999999999999654 689999
Q ss_pred eeeeecC
Q 048783 105 ALKVSLG 111 (1117)
Q Consensus 105 ~Lkv~~~ 111 (1117)
.|||++.
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999943
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=76.30 E-value=8.3 Score=37.35 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=53.4
Q ss_pred ceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHH
Q 048783 8 SVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYI 87 (1117)
Q Consensus 8 ~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a 87 (1117)
.-.+-|.|.|||... +..|..+|++ +|.+-..+. . .....--|+|.++.+|
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~-~--------------------------~~~NWihI~Y~s~~~A 72 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVM-S--------------------------NTGNWMHIRYQSKLQA 72 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEE-C--------------------------SSSSEEEEEESSHHHH
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHh-hCcEEEecc-C--------------------------CCCCeEEEEeCCHHHH
Confidence 346789999999995 8899999998 998766554 1 1345688999999999
Q ss_pred HHHHHhhcccceecc-Ceeeeee
Q 048783 88 TRAMDAAEHMELFLN-GRALKVS 109 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~-~~~Lkv~ 109 (1117)
+.||..-+ .+++ +--+=|.
T Consensus 73 ~rAL~kNG---~ii~g~~mIGV~ 92 (119)
T 1wwh_A 73 RKALSKDG---RIFGESIMIGVK 92 (119)
T ss_dssp HHHHTTTT---CEETTTEECEEE
T ss_pred HHHHHhCC---eEecCCEEEEEE
Confidence 99999865 4554 4556665
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=75.21 E-value=2 Score=42.00 Aligned_cols=25 Identities=0% Similarity=0.017 Sum_probs=21.8
Q ss_pred CCccceEEEEecChHHHHHHHHhhc
Q 048783 71 EKVEPHAFVHFATSTYITRAMDAAE 95 (1117)
Q Consensus 71 ~~~~~~afV~F~~~e~a~~a~~~a~ 95 (1117)
.+++++|||+|+++++|..|+....
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhc
Confidence 3689999999999999999997643
No 213
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=67.91 E-value=14 Score=35.46 Aligned_cols=71 Identities=13% Similarity=0.324 Sum_probs=54.9
Q ss_pred eeEEEEeCCCccccHHHHHHHHHhcc----ccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChH
Q 048783 10 DTQVSVGGFDRDIKAVDLVKYLENEV----GGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATST 85 (1117)
Q Consensus 10 ~~~v~v~gf~~~~~a~~l~~~lE~~~----G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e 85 (1117)
.+||.+.|+|-+|+...+..|+|.+. |....+-|-. +++ =|+|.|++..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-----------------------DH~----GAivef~d~~ 73 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-----------------------DFN----GAIIIFRDSK 73 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-----------------------TTT----EEEEECSCHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-----------------------CCC----ceEEEEccch
Confidence 57899999999999999999999974 4444444443 344 4999999999
Q ss_pred HHHHHHHhhcccceeccCeeeeee
Q 048783 86 YITRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 86 ~a~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
+|..|..+-. ..-|.|+.|++.
T Consensus 74 ~AgKasLaL~--G~ef~gr~Lr~g 95 (117)
T 2l9w_A 74 FAAKMLMILN--GSQFQGKVIRSG 95 (117)
T ss_dssp HHHHHHHHHS--SEEETTEEEEEE
T ss_pred hhHHHHhhcC--CeeecCeEEEec
Confidence 9888775432 367889999987
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=47.50 E-value=15 Score=34.54 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=45.8
Q ss_pred ccCceeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecCh
Q 048783 5 EKTSVDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATS 84 (1117)
Q Consensus 5 ~~~~~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~ 84 (1117)
+....+.-|-+-+||+.....||.+-|... |.| ..+ |-.-++|+|-|.++
T Consensus 10 d~~p~r~HVf~l~FP~ewKt~DI~~lFs~f-ggv-----~I~------------------------WidDTsAlvvf~~~ 59 (100)
T 1whv_A 10 DLQPKRDHVLHVTFPKEWKTSDLYQLFSAF-GNI-----QIS------------------------WIDDTSAFVSLSQP 59 (100)
T ss_dssp CCCCCCCSEEEEECCTTCCHHHHHHHHTTT-CSC-----CCE------------------------EEETTEEEEECSCH
T ss_pred CCCCCCCeEEEEeCChhhhhHHHHHHhhcc-CCE-----EEE------------------------EEcCCeEEEEecCH
Confidence 344444445555999999999999999985 522 222 55678999999999
Q ss_pred HHHHHHHHhh
Q 048783 85 TYITRAMDAA 94 (1117)
Q Consensus 85 e~a~~a~~~a 94 (1117)
+.|..|++..
T Consensus 60 ~~a~~al~~i 69 (100)
T 1whv_A 60 EQVQIAVNTS 69 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999964
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=45.07 E-value=16 Score=34.32 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=42.0
Q ss_pred EEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHHHHHH
Q 048783 13 VSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYITRAMD 92 (1117)
Q Consensus 13 v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~~a~~ 92 (1117)
|-+-+||+.....||..-|... |. +..+ |-.-++|+|-|.+++.|..|++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~f-gg-----v~I~------------------------WidDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAF-GN-----IQIS------------------------WIDDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTS-EE-----EEEE------------------------EEETTEEEEEEEEECHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHHhcc-CC-----EEEE------------------------EEcCCeEEEEecCHHHHHHHHH
Confidence 3334999999999999999984 62 2233 5567899999999999999999
Q ss_pred hh
Q 048783 93 AA 94 (1117)
Q Consensus 93 ~a 94 (1117)
..
T Consensus 58 ~i 59 (101)
T 3ctr_A 58 TS 59 (101)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=41.18 E-value=12 Score=44.17 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=40.5
Q ss_pred eeeEEEEeCCCccccHHHHHHHHHhccccEEEEEEEecCCCCCCCCcccccccccccccCCCCCccceEEEEecChHHHH
Q 048783 9 VDTQVSVGGFDRDIKAVDLVKYLENEVGGVWRCRLKTSCTPSESYPNFFIENVAEVQKTDDYEKVEPHAFVHFATSTYIT 88 (1117)
Q Consensus 9 ~~~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afV~F~~~e~a~ 88 (1117)
.-++|-|. +++.++.++|.+|| +..|.|...-.-.+ -.-||.|+|.+.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~-~~~g~i~~~~~~~~--------------------------~g~~~~vef~~~~~~~ 103 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYL-SQFGPINNHFFYES--------------------------FGLYAVVEFCQKESIG 103 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHH-GGGSCCCCEEEECS--------------------------SSEEEEEECC---CCH
T ss_pred hcceEEEE-cCCCCCHHHHHHHH-HhcCCcceEEEEcc--------------------------CCeEEEEEeCCHHHHH
Confidence 45788898 79999999999999 56898766555543 1289999999999999
Q ss_pred HHHHhh
Q 048783 89 RAMDAA 94 (1117)
Q Consensus 89 ~a~~~a 94 (1117)
.+++.+
T Consensus 104 ~~~~~~ 109 (464)
T 3pq1_A 104 SLQNGT 109 (464)
T ss_dssp HHHSSC
T ss_pred HHHhcc
Confidence 777664
No 217
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=40.77 E-value=37 Score=32.69 Aligned_cols=69 Identities=7% Similarity=-0.045 Sum_probs=42.0
Q ss_pred CCccceEEEEecChHHHHHHHHhhcccceeccCeeeeeecCCCCCccccC----CCCCCCCcccCCeEEEEeeee
Q 048783 71 EKVEPHAFVHFATSTYITRAMDAAEHMELFLNGRALKVSLGPENPFRLNQ----RGGTSAPLKLPDVYVEIGSLV 141 (1117)
Q Consensus 71 ~~~~~~afV~F~~~e~a~~a~~~a~~~~l~~~~~~Lkv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~ 141 (1117)
.+..++++|+|+++++|+.|+....++ -.++| .+++..+......... .......-....-+|.||.+-
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng-~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYAND-NGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHH-HTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcC-CCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 467899999999999999999776333 34555 8888744432110000 011112333455688888863
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=34.47 E-value=94 Score=30.57 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=48.6
Q ss_pred eEEEEeCCCccccHHHHHHHHHhccccEEE-EEEEecCCCCCCCCcccccccccccccCCCCC--ccceEEEEecChHHH
Q 048783 11 TQVSVGGFDRDIKAVDLVKYLENEVGGVWR-CRLKTSCTPSESYPNFFIENVAEVQKTDDYEK--VEPHAFVHFATSTYI 87 (1117)
Q Consensus 11 ~~v~v~gf~~~~~a~~l~~~lE~~~G~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~afV~F~~~e~a 87 (1117)
+-|.|.|||... +..+.++|++ +|.+-. ... +.+.++++ +. -+...+|-. -.....|+|.++.+|
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~-~G~IlE~~~~----~~~~~~~~--~~----~~~~k~yP~f~g~NWikItYds~~~A 75 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQE-FGTILEDFEV----LRKPQAMT--VG----LQDRQFVPIFSGNSWTKITYDNPASA 75 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGG-GSCBCSCCGG----GCCC-----------------CCCCCEETTEEEEEBSSHHHH
T ss_pred eEEEEEecCHHH-HHHHHHHHHh-hceEeeeccc----cccccccc--cc----cccccccCccCCCcEEEEEcCCHHHH
Confidence 467899997664 5678888888 586321 000 01111100 00 000111111 234579999999999
Q ss_pred HHHHHhhcccceeccCeeeeee
Q 048783 88 TRAMDAAEHMELFLNGRALKVS 109 (1117)
Q Consensus 88 ~~a~~~a~~~~l~~~~~~Lkv~ 109 (1117)
.+|+..-| -+++|..+=|.
T Consensus 76 ~rAL~~NG---~ii~G~mIGV~ 94 (132)
T 3p3d_A 76 VDALLENG---AVFNGVLLGVI 94 (132)
T ss_dssp HHHHTTTT---CEETTEECEEE
T ss_pred HHHHHhCC---eEeCcEEEEEE
Confidence 99999876 36788877776
No 219
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=33.15 E-value=51 Score=30.37 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=49.0
Q ss_pred cchhHHHHHHHHhcCCeeEcCeEEEEEEecccccccceEEEEecCCCCCHHHHHHHhcCCC
Q 048783 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508 (1117)
Q Consensus 448 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~~s~wFfa~~~~~t~~~Ir~wmG~F~ 508 (1117)
..+++.++|+.++.+|+..++-+.+.+||+ |+.=.+.+.-++...+.+++.+-+-.|.
T Consensus 20 Dl~~L~~~Vr~i~~~Gl~wg~~k~~piafG---ikkL~i~~vveDd~v~tD~lee~i~~~e 77 (91)
T 1b64_A 20 DMAKLEECVRSIQADGLVWGSSKLVPVGYG---IKKLQIQCVVEDDKVGTDMLEEQITAFE 77 (91)
T ss_dssp CHHHHHHHHHHCCCTTCEEEEEEEEESSSS---CEEEEEEEEECTTSSCHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHhCcCCcEEEEEEEEEEEee---EEEEEEEEEEECCccChHHHHHHHHhcc
Confidence 467899999999999999999999999998 4444577777887789999988877664
No 220
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=30.37 E-value=59 Score=30.14 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHhcCCeeEcCeEEEEEEecccccccceEEEEecCCCCCHHHHHHHhcCCC
Q 048783 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508 (1117)
Q Consensus 448 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~~s~wFfa~~~~~t~~~Ir~wmG~F~ 508 (1117)
..+++.++|+.++.+|+.+++-..+.+||+ |+.=.+.+.-++...+.+++-+-+-.|.
T Consensus 23 Dl~~L~~~Vr~i~~~Gl~wg~~k~~piafG---lkkL~i~~vveDd~~~tD~lee~i~~~e 80 (94)
T 1f60_B 23 NLEEMVANVKAIEMEGLTWGAHQFIPIGFG---IKKLQINCVVEDDKVSLDDLQQSIEEDE 80 (94)
T ss_dssp CHHHHHHHHHTCCCTTEEEEEEEEEEEETT---EEEEEEEEEEETTTCCHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHhCcCCcEEEEEEEEEEeee---eEEEEEEEEEECCccChHHHHHHHHhcc
Confidence 467899999999999999999999999998 4444477777887788888887776664
No 221
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=29.64 E-value=1.8e+02 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.5
Q ss_pred CccceEEEEecChHHHHHHHHhhccc-ceeccCeeeeee
Q 048783 72 KVEPHAFVHFATSTYITRAMDAAEHM-ELFLNGRALKVS 109 (1117)
Q Consensus 72 ~~~~~afV~F~~~e~a~~a~~~a~~~-~l~~~~~~Lkv~ 109 (1117)
....|-.|.|..-.....+|.+|.+. .+-|.|.+++++
T Consensus 60 ~tPRhIIvK~~~~~~KErILkaar~k~~vtykg~pirls 98 (100)
T 2w7a_A 60 ATPRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp CSCCEEEEEESCHHHHHHHHHHHHHHCCEEETTEEEEEE
T ss_pred CCCCeEEEEecccccHHHHHHHHHHhCceeeCCcceeec
Confidence 35679999999999999999999865 589999999988
No 222
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=23.42 E-value=76 Score=29.12 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHhcCCeeEcCeEEEEEEecccccccceEEEEecCCCCCHHHHHHHhcCCC
Q 048783 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGETSVLDIKNWMGEFT 508 (1117)
Q Consensus 448 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~~s~wFfa~~~~~t~~~Ir~wmG~F~ 508 (1117)
..+++.++|+.++..|+.+++-..+.+||+ |+.=.+.+.-++...+.+.+-+-+-.|.
T Consensus 18 Dl~~L~~~vk~~~~~gl~w~~~k~~piafG---lk~L~i~~vveD~~~~td~lee~i~~~e 75 (89)
T 1gh8_A 18 DLEALKKEIQERIPEGTELHKIDEEPIAFG---LVALNVMVVVGDAEGGTEAAEESLSGIE 75 (89)
T ss_dssp CHHHHHHHHHHHSCTTSEECCCCEEECSSS---CEEEEEEEEESSSCGGGGHHHHHHTTSC
T ss_pred CHHHHHHHHHHhccCCcEEeeeeEEEEEcc---eeeEEEEEEEEcCCcChHHHHHHHhccC
Confidence 467899999999999999999999999998 5544577777877777788877776665
No 223
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=21.00 E-value=96 Score=28.57 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHhcCCeeEcCeEEEEEEecccccccceEEEEecCCCC-CHHHHHHHhcCCC
Q 048783 448 QKTGVFKRVKSILSDGFNLCGRRYSFLAFSSNQLRDHSAWFFSKVGET-SVLDIKNWMGEFT 508 (1117)
Q Consensus 448 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SQLR~~s~wFfa~~~~~-t~~~Ir~wmG~F~ 508 (1117)
..+++.++|+.++..|+.+++-..+.+||+ |+.=.+.+.-++.+. +.+++-+-+-.|.
T Consensus 20 Dl~~L~~~vk~~~~~gl~w~~~k~~pIafG---lk~L~i~~vveD~~~~~tD~lee~i~~~e 78 (91)
T 2yy3_A 20 NLDELEEKLKKVIPEKYGLAKVEREPIAFG---LVALKFYVLGRDEEGYSFDEVAEKFEEVE 78 (91)
T ss_dssp CHHHHHHHHHHHSCTTCEEEEEEEEECTTS---CEEEEEEEEECSSTTCCHHHHHHHHHHST
T ss_pred CHHHHHHHHHHhccCCcEEeeeeEEEEEcc---eeeEEEEEEEECCCccccHHHHHHHhcCC
Confidence 468899999999999999999999999998 554457777788777 8888877766554
Done!