Query 048784
Match_columns 282
No_of_seqs 201 out of 1142
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 23:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 1.9E-90 6.4E-95 635.6 29.9 260 1-277 13-281 (283)
2 3mwb_A Prephenate dehydratase; 100.0 1.4E-89 4.6E-94 637.2 30.2 266 1-279 13-285 (313)
3 2qmw_A PDT, prephenate dehydra 100.0 3.2E-88 1.1E-92 615.9 27.7 253 1-275 10-267 (267)
4 3luy_A Probable chorismate mut 100.0 1.3E-86 4.4E-91 620.9 25.9 262 1-280 13-292 (329)
5 1phz_A Protein (phenylalanine 99.8 2E-21 7E-26 185.3 9.2 81 179-273 30-111 (429)
6 2ko1_A CTR148A, GTP pyrophosph 97.3 0.0022 7.4E-08 46.7 9.8 68 182-266 4-71 (88)
7 1zpv_A ACT domain protein; str 97.0 0.0055 1.9E-07 45.1 10.0 38 183-220 5-42 (91)
8 2f1f_A Acetolactate synthase i 96.7 0.011 3.6E-07 49.6 10.2 68 183-266 3-70 (164)
9 2pc6_A Probable acetolactate s 96.5 0.016 5.5E-07 48.5 9.7 68 183-266 4-71 (165)
10 2fgc_A Acetolactate synthase, 96.3 0.022 7.5E-07 48.9 9.5 71 183-269 29-99 (193)
11 2jhe_A Transcription regulator 95.0 0.13 4.5E-06 41.6 9.2 62 186-267 3-64 (190)
12 2f06_A Conserved hypothetical 94.9 0.092 3.1E-06 41.9 7.8 61 184-266 72-133 (144)
13 1u8s_A Glycine cleavage system 94.4 0.53 1.8E-05 39.3 11.7 36 183-218 93-128 (192)
14 2f06_A Conserved hypothetical 94.0 0.24 8.2E-06 39.4 8.4 35 184-218 7-41 (144)
15 1wdn_A GLNBP, glutamine bindin 93.9 0.48 1.7E-05 38.5 10.3 93 2-110 115-207 (226)
16 1y7p_A Hypothetical protein AF 93.8 0.09 3.1E-06 45.9 5.8 66 183-264 4-70 (223)
17 3h7m_A Sensor protein; histidi 93.4 0.44 1.5E-05 39.0 9.3 92 3-110 124-215 (234)
18 4f3p_A Glutamine-binding perip 93.0 0.61 2.1E-05 39.1 9.8 77 3-84 137-213 (249)
19 3mpk_A Virulence sensor protei 92.8 0.23 7.8E-06 42.6 6.8 92 3-110 146-238 (267)
20 3k4u_A Binding component of AB 92.7 0.19 6.6E-06 42.1 6.1 93 2-110 121-213 (245)
21 3kzg_A Arginine 3RD transport 92.4 0.37 1.3E-05 40.0 7.6 95 3-110 117-215 (237)
22 2nyi_A Unknown protein; protei 92.3 0.44 1.5E-05 40.1 7.8 35 183-217 93-127 (195)
23 1xt8_A Putative amino-acid tra 92.2 0.8 2.7E-05 39.6 9.7 90 2-110 159-250 (292)
24 3lou_A Formyltetrahydrofolate 91.8 0.91 3.1E-05 41.1 9.8 67 183-263 10-81 (292)
25 3del_B Arginine binding protei 90.8 0.88 3E-05 37.6 8.2 88 3-110 125-217 (242)
26 3obi_A Formyltetrahydrofolate 89.1 2.5 8.5E-05 38.1 10.1 68 183-264 6-76 (288)
27 3n0v_A Formyltetrahydrofolate 89.0 2.1 7.2E-05 38.5 9.6 68 183-264 8-77 (286)
28 3o1l_A Formyltetrahydrofolate 89.0 2.9 9.9E-05 37.9 10.5 67 183-263 22-91 (302)
29 4h5g_A Amino acid ABC superfam 88.4 0.75 2.6E-05 38.8 5.9 43 2-44 129-171 (243)
30 3qax_A Probable ABC transporte 88.1 1.8 6.1E-05 36.1 8.2 88 2-110 145-238 (268)
31 1u8s_A Glycine cleavage system 87.8 2.2 7.6E-05 35.4 8.4 35 184-218 7-41 (192)
32 3tql_A Arginine-binding protei 87.7 0.62 2.1E-05 37.8 4.8 42 3-44 116-158 (227)
33 3nrb_A Formyltetrahydrofolate 87.6 1.6 5.5E-05 39.3 7.9 68 183-264 7-75 (287)
34 3i6v_A Periplasmic His/Glu/Gln 87.2 2.3 7.9E-05 35.2 8.2 86 3-110 113-202 (232)
35 3k5p_A D-3-phosphoglycerate de 87.2 3 0.0001 39.5 9.8 69 183-269 343-411 (416)
36 3kbr_A Cyclohexadienyl dehydra 86.9 0.69 2.4E-05 38.2 4.7 43 2-44 131-173 (239)
37 4i62_A Amino acid ABC transpor 86.8 0.96 3.3E-05 37.9 5.7 43 2-44 156-198 (269)
38 2pyy_A Ionotropic glutamate re 85.5 4.1 0.00014 32.8 8.7 114 17-145 41-163 (228)
39 2y7i_A STM4351; arginine-bindi 85.4 1.3 4.4E-05 36.1 5.6 43 2-44 118-160 (229)
40 4dz1_A DALS D-alanine transpor 84.8 1.7 6E-05 36.6 6.4 75 2-84 143-225 (259)
41 3p96_A Phosphoserine phosphata 84.8 3.5 0.00012 38.1 8.9 71 184-270 13-87 (415)
42 1ii5_A SLR1257 protein; membra 84.3 10 0.00035 30.5 10.7 116 17-145 45-167 (233)
43 1sc6_A PGDH, D-3-phosphoglycer 83.9 3.9 0.00013 38.4 8.8 63 184-264 332-394 (404)
44 1ygy_A PGDH, D-3-phosphoglycer 83.3 5.7 0.0002 38.5 10.0 71 184-271 455-526 (529)
45 2yjp_A Putative ABC transporte 83.2 1.7 5.7E-05 37.7 5.6 43 2-44 170-212 (291)
46 3hv1_A Polar amino acid ABC up 82.8 0.83 2.9E-05 38.7 3.4 92 3-110 134-233 (268)
47 2vha_A Periplasmic binding tra 82.2 2.6 8.8E-05 36.0 6.4 42 3-44 137-182 (287)
48 2nyi_A Unknown protein; protei 82.0 5.6 0.00019 33.2 8.3 35 184-218 6-40 (195)
49 2pyy_A Ionotropic glutamate re 81.3 6 0.00021 31.7 8.1 75 3-84 119-193 (228)
50 1lst_A Lysine, arginine, ornit 79.9 2.5 8.5E-05 34.6 5.3 43 2-44 117-161 (239)
51 2pvu_A ARTJ; basic amino acid 79.6 2.3 7.8E-05 36.1 5.1 43 2-44 153-196 (272)
52 2yln_A Putative ABC transporte 79.5 3.8 0.00013 35.2 6.6 91 2-110 170-262 (283)
53 2q88_A EHUB, putative ABC tran 79.0 3 0.0001 34.7 5.6 43 2-44 130-173 (257)
54 2re1_A Aspartokinase, alpha an 78.5 3.6 0.00012 33.5 5.8 34 184-217 26-60 (167)
55 3mpk_A Virulence sensor protei 78.4 21 0.00072 29.9 10.9 113 17-145 72-192 (267)
56 2v25_A Major cell-binding fact 78.3 2 6.8E-05 35.6 4.2 42 3-44 155-200 (259)
57 3del_B Arginine binding protei 76.6 13 0.00043 30.3 8.8 114 17-147 51-172 (242)
58 3kzg_A Arginine 3RD transport 76.4 4.7 0.00016 33.1 6.1 115 17-146 44-164 (237)
59 3mtj_A Homoserine dehydrogenas 76.4 4.9 0.00017 38.4 6.8 67 184-264 360-426 (444)
60 1wdn_A GLNBP, glutamine bindin 76.4 18 0.0006 28.8 9.5 113 17-145 42-162 (226)
61 3tql_A Arginine-binding protei 75.9 18 0.00063 28.7 9.5 114 17-146 42-164 (227)
62 2dtj_A Aspartokinase; protein- 72.3 12 0.00042 30.6 7.5 27 190-216 23-49 (178)
63 2dt9_A Aspartokinase; protein- 72.1 7.7 0.00026 31.4 6.2 60 190-263 24-83 (167)
64 1ii5_A SLR1257 protein; membra 72.0 5.5 0.00019 32.2 5.3 40 3-44 123-162 (233)
65 3s1t_A Aspartokinase; ACT doma 71.7 13 0.00046 30.6 7.7 61 189-263 23-83 (181)
66 3mah_A Aspartokinase; aspartat 70.8 3.6 0.00012 33.1 3.8 50 191-263 29-78 (157)
67 4go7_X Aspartokinase; transfer 70.1 4.5 0.00016 34.4 4.4 31 189-219 42-72 (200)
68 1tdj_A Biosynthetic threonine 70.1 5.4 0.00019 38.8 5.5 69 183-268 338-406 (514)
69 3i6v_A Periplasmic His/Glu/Gln 69.1 20 0.00068 29.3 8.3 111 17-145 45-157 (232)
70 2re1_A Aspartokinase, alpha an 69.1 11 0.00036 30.6 6.3 51 190-264 113-163 (167)
71 3ix1_A N-formyl-4-amino-5-amin 68.9 24 0.00082 30.3 9.1 88 18-112 36-130 (302)
72 4ab5_A Transcriptional regulat 67.3 28 0.00097 27.3 8.6 113 15-145 34-162 (222)
73 4eq9_A ABC transporter substra 67.0 14 0.00047 30.1 6.8 43 2-44 121-169 (246)
74 2pfz_A Putative exported prote 66.3 67 0.0023 28.0 14.2 162 2-171 10-214 (301)
75 2ozz_A Hypothetical protein YH 66.3 24 0.00081 30.6 8.3 110 18-139 46-161 (231)
76 4i62_A Amino acid ABC transpor 66.2 26 0.00089 28.7 8.5 113 17-145 82-203 (269)
77 2pvu_A ARTJ; basic amino acid 66.1 37 0.0013 28.3 9.6 113 17-145 81-201 (272)
78 4f3p_A Glutamine-binding perip 65.8 33 0.0011 28.1 9.0 113 17-145 63-183 (249)
79 3qax_A Probable ABC transporte 65.8 39 0.0013 27.6 9.5 114 17-147 71-193 (268)
80 3h7m_A Sensor protein; histidi 64.3 52 0.0018 26.1 11.3 112 17-145 51-170 (234)
81 3uif_A Sulfonate ABC transport 63.3 75 0.0025 27.9 11.4 116 18-143 46-176 (348)
82 2vpn_A Periplasmic substrate b 63.2 79 0.0027 27.8 13.1 165 2-171 10-217 (316)
83 2dtj_A Aspartokinase; protein- 61.5 8 0.00027 31.8 4.2 58 183-264 97-155 (178)
84 3ho7_A OXYR; beta-alpha-barrel 59.9 52 0.0018 26.0 9.0 31 15-45 37-68 (232)
85 3qsl_A Putative exported prote 59.9 51 0.0017 28.3 9.5 113 18-140 66-194 (346)
86 2y7i_A STM4351; arginine-bindi 59.4 25 0.00085 28.1 6.9 114 17-146 46-166 (229)
87 2pfy_A Putative exported prote 58.8 91 0.0031 27.1 13.0 141 2-150 11-193 (301)
88 2dt9_A Aspartokinase; protein- 58.7 10 0.00035 30.6 4.3 58 183-264 97-155 (167)
89 3k4u_A Binding component of AB 58.0 26 0.00089 28.6 6.9 113 17-145 45-168 (245)
90 2iee_A ORF2, probable ABC tran 57.9 16 0.00053 30.8 5.6 90 2-109 138-230 (271)
91 3ab4_A Aspartokinase; aspartat 57.0 62 0.0021 30.1 10.1 105 145-264 221-332 (421)
92 3ksx_A Nitrate transport prote 56.0 72 0.0025 27.5 9.9 106 17-130 59-177 (324)
93 3un6_A Hypothetical protein sa 55.5 86 0.0029 27.4 10.4 112 18-140 84-209 (341)
94 3kbr_A Cyclohexadienyl dehydra 54.6 9 0.00031 31.2 3.4 114 17-146 55-179 (239)
95 4dz1_A DALS D-alanine transpor 54.4 81 0.0028 25.9 9.6 115 17-145 69-196 (259)
96 3hv1_A Polar amino acid ABC up 53.8 6.8 0.00023 32.8 2.5 114 17-146 61-188 (268)
97 1ixc_A CBNR, LYSR-type regulat 53.1 96 0.0033 25.6 13.7 120 15-144 117-247 (294)
98 3tmg_A Glycine betaine, L-prol 53.1 1.1E+02 0.0039 26.4 13.4 133 17-154 45-198 (280)
99 3fxq_A LYSR type regulator of 51.6 1E+02 0.0035 25.9 9.9 120 14-145 117-248 (305)
100 2yjp_A Putative ABC transporte 50.5 53 0.0018 27.9 7.9 113 17-145 98-217 (291)
101 2hxr_A HTH-type transcriptiona 48.8 99 0.0034 24.5 13.7 122 14-145 55-185 (238)
102 3cg4_A Response regulator rece 47.9 73 0.0025 23.2 7.5 110 92-204 12-124 (142)
103 4ddd_A Immunogenic protein; ss 47.7 21 0.00073 31.8 5.0 45 1-45 152-203 (327)
104 2cdq_A Aspartokinase; aspartat 46.2 47 0.0016 32.0 7.4 99 145-263 300-410 (510)
105 2qpq_A Protein BUG27; alpha/be 44.5 21 0.00072 31.7 4.4 43 3-45 138-184 (301)
106 2f5x_A BUGD; periplasmic bindi 44.0 23 0.00079 31.7 4.6 43 3-45 147-193 (312)
107 4esw_A Pyrimidine biosynthesis 43.8 46 0.0016 29.3 6.6 89 17-112 39-134 (342)
108 2v25_A Major cell-binding fact 42.8 65 0.0022 26.0 7.0 115 17-145 82-205 (259)
109 3tvi_A Aspartokinase; structur 42.7 93 0.0032 29.4 8.8 100 144-265 254-363 (446)
110 1xt8_A Putative amino-acid tra 42.6 1.5E+02 0.005 24.8 9.5 113 17-145 87-206 (292)
111 2q88_A EHUB, putative ABC tran 42.3 29 0.001 28.4 4.7 112 18-145 54-178 (257)
112 2yln_A Putative ABC transporte 42.3 93 0.0032 26.2 8.1 113 17-145 97-215 (283)
113 3s1t_A Aspartokinase; ACT doma 42.3 63 0.0021 26.4 6.7 58 183-264 98-156 (181)
114 4eq9_A ABC transporter substra 41.7 46 0.0016 26.7 5.9 114 18-145 49-174 (246)
115 3hn0_A Nitrate transport prote 41.2 27 0.00091 30.3 4.5 42 3-44 104-150 (283)
116 2hpg_A ABC transporter, peripl 40.8 73 0.0025 28.3 7.5 144 2-150 18-213 (327)
117 2dvz_A BUGE, putative exported 40.8 27 0.00092 31.3 4.5 43 3-45 151-197 (314)
118 1uth_A LYSR-type regulatory pr 40.5 80 0.0027 26.9 7.5 120 15-145 131-259 (315)
119 2c0n_A A197; thermophil protei 40.1 18 0.00061 30.9 2.9 38 236-278 53-93 (203)
120 3lte_A Response regulator; str 40.0 31 0.001 25.0 4.1 39 92-130 11-49 (132)
121 2h9b_A HTH-type transcriptiona 39.7 1.7E+02 0.0058 24.6 12.9 121 14-144 115-248 (312)
122 3qsl_A Putative exported prote 38.1 25 0.00086 30.4 3.8 42 3-44 146-194 (346)
123 3fzv_A Probable transcriptiona 38.0 1.7E+02 0.0059 24.2 9.4 109 15-130 121-238 (306)
124 3kht_A Response regulator; PSI 38.0 44 0.0015 24.7 4.8 78 92-172 10-90 (144)
125 4gvo_A LMO2349 protein; struct 38.0 96 0.0033 25.3 7.4 87 3-109 125-219 (243)
126 2vha_A Periplasmic binding tra 37.9 1.7E+02 0.0059 24.1 10.7 114 18-145 65-187 (287)
127 3i42_A Response regulator rece 37.7 25 0.00086 25.4 3.3 78 93-173 9-87 (127)
128 3gzg_A Molybdate-binding perip 37.6 26 0.00089 30.1 3.8 44 2-46 144-192 (253)
129 3onm_A Transcriptional regulat 37.5 1.5E+02 0.0053 23.5 14.7 111 14-144 52-171 (238)
130 3grc_A Sensor protein, kinase; 36.7 24 0.00084 26.0 3.1 78 92-172 11-89 (140)
131 3jv9_A OXYR, transcriptional r 35.9 1.5E+02 0.005 22.8 13.0 32 14-45 29-61 (219)
132 3eod_A Protein HNR; response r 35.8 52 0.0018 23.7 4.8 77 92-172 12-88 (130)
133 3gl9_A Response regulator; bet 35.5 29 0.00098 25.2 3.2 75 94-171 9-84 (122)
134 1zbm_A Hypothetical protein AF 35.3 42 0.0014 28.4 4.7 42 3-45 111-152 (280)
135 3l76_A Aspartokinase; alloster 35.1 74 0.0025 31.2 7.0 60 189-264 277-336 (600)
136 3l6g_A Betaine ABC transporter 35.1 2.1E+02 0.0071 24.3 13.3 133 17-154 31-181 (256)
137 2x26_A Periplasmic aliphatic s 34.7 2E+02 0.007 24.1 10.9 116 17-141 33-160 (308)
138 3r26_A Molybdate-binding perip 34.7 25 0.00084 29.6 3.1 44 2-46 128-176 (237)
139 1tdj_A Biosynthetic threonine 34.6 29 0.00098 33.7 3.8 35 185-220 435-469 (514)
140 3g3k_A Glutamate receptor, ion 34.6 17 0.0006 30.0 2.1 28 115-145 169-196 (259)
141 2iee_A ORF2, probable ABC tran 33.5 93 0.0032 25.8 6.6 109 17-142 64-181 (271)
142 2b4a_A BH3024; flavodoxin-like 33.3 1.4E+02 0.0047 21.6 7.1 108 90-203 18-127 (138)
143 1r9l_A Glycine betaine-binding 33.0 1.7E+02 0.0059 25.5 8.6 134 18-156 38-210 (309)
144 3ksx_A Nitrate transport prote 31.5 46 0.0016 28.9 4.4 42 2-44 137-185 (324)
145 1sw5_A Osmoprotection protein 30.9 66 0.0023 27.6 5.3 138 17-155 35-207 (275)
146 3dhx_A Methionine import ATP-b 30.8 71 0.0024 23.7 4.8 33 240-274 66-98 (106)
147 2j48_A Two-component sensor ki 30.1 32 0.0011 23.9 2.7 77 93-172 7-84 (119)
148 3cnb_A DNA-binding response re 29.4 62 0.0021 23.5 4.3 78 92-172 13-93 (143)
149 3l76_A Aspartokinase; alloster 28.7 89 0.0031 30.6 6.3 38 183-220 444-482 (600)
150 2xwv_A Sialic acid-binding per 28.5 2.9E+02 0.01 24.0 13.1 164 2-171 12-220 (312)
151 3uif_A Sulfonate ABC transport 28.3 41 0.0014 29.6 3.6 42 2-44 125-173 (348)
152 3n5l_A Binding protein compone 27.6 2.2E+02 0.0074 24.7 8.3 58 19-85 150-213 (310)
153 3n53_A Response regulator rece 27.5 1.5E+02 0.0053 21.4 6.3 109 95-207 11-122 (140)
154 1us5_A Putative GLUR0 ligand b 27.3 54 0.0019 28.0 4.1 44 1-44 137-187 (314)
155 3t6k_A Response regulator rece 26.7 33 0.0011 25.4 2.3 77 93-172 10-87 (136)
156 3hdv_A Response regulator; PSI 26.6 71 0.0024 23.1 4.2 79 92-172 12-90 (136)
157 1us5_A Putative GLUR0 ligand b 26.4 2.7E+02 0.0093 23.4 8.5 117 19-138 53-185 (314)
158 3rof_A Low molecular weight pr 25.9 63 0.0021 26.0 3.9 23 199-221 58-80 (158)
159 3ab4_A Aspartokinase; aspartat 25.4 1.1E+02 0.0037 28.4 6.0 51 190-264 354-404 (421)
160 2a5s_A N-methyl-D-aspartate re 24.9 33 0.0011 29.2 2.2 25 20-44 187-213 (284)
161 2fyi_A HTH-type transcriptiona 23.9 2.6E+02 0.009 21.9 12.4 120 14-143 39-168 (228)
162 2qrr_A Methionine import ATP-b 23.0 1.2E+02 0.0042 22.0 4.8 31 240-272 68-98 (101)
163 3oxn_A Putative transcriptiona 22.8 2.8E+02 0.0096 21.8 11.4 120 14-145 44-172 (241)
164 3c3m_A Response regulator rece 22.4 57 0.002 24.0 2.9 77 93-172 9-86 (138)
165 3hn0_A Nitrate transport prote 22.3 68 0.0023 27.6 3.7 113 18-142 35-153 (283)
166 3ced_A Methionine import ATP-b 22.2 1.2E+02 0.0042 22.1 4.6 32 240-272 65-96 (98)
167 4ddd_A Immunogenic protein; ss 22.2 2.9E+02 0.0099 24.1 8.1 111 18-131 68-195 (327)
168 3vi3_B Integrin beta-1; beta p 22.1 77 0.0026 30.2 4.3 39 237-275 123-168 (454)
169 3gt7_A Sensor protein; structu 22.0 51 0.0017 24.9 2.6 78 92-172 12-90 (154)
170 2rc8_A Glutamate [NMDA] recept 21.9 55 0.0019 27.9 3.1 77 3-84 177-259 (294)
171 3v4v_B Integrin beta-7; cell a 21.9 57 0.002 31.6 3.3 39 237-275 133-178 (503)
172 3t3p_B Integrin beta-3; integr 21.5 79 0.0027 30.3 4.2 39 237-275 112-157 (472)
173 3lua_A Response regulator rece 21.4 49 0.0017 24.3 2.3 79 93-172 10-90 (140)
174 2qsw_A Methionine import ATP-b 21.0 1.2E+02 0.004 22.0 4.3 31 240-272 68-98 (100)
175 2ql3_A Probable transcriptiona 20.8 2.8E+02 0.0097 21.1 13.9 110 14-130 30-148 (209)
176 1h45_A Lactoferrin; metal tran 20.2 1E+02 0.0034 28.0 4.5 29 16-44 33-61 (334)
177 3c1m_A Probable aspartokinase; 20.2 1.4E+02 0.0047 28.2 5.7 53 190-264 414-466 (473)
178 2x26_A Periplasmic aliphatic s 20.0 92 0.0031 26.4 4.1 42 2-44 111-159 (308)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=1.9e-90 Score=635.59 Aligned_cols=260 Identities=52% Similarity=0.770 Sum_probs=248.3
Q ss_pred CCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeee
Q 048784 1 GVRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLL 80 (282)
Q Consensus 1 GP~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~ 80 (282)
||+|||||+||+++| +++||+||++||++|++|++||||||||||++|+|.+|+|+|.+++++|+||+.+||+|||+
T Consensus 13 Gp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~Ll 89 (283)
T 2qmx_A 13 GEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFVKVEHCLL 89 (283)
T ss_dssp SCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEEECCCEEE
T ss_pred CCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEEeeeeeEe
Confidence 999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCccEEEechHHHHHHHHHHHhc-CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccC
Q 048784 81 ANPGVKVEDLKRVLSHPQALAQCENTLTKL-GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDD 159 (282)
Q Consensus 81 a~~~~~l~~I~~V~SHpqal~QC~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~ 159 (282)
+++|.++++|++||||||||+||++||+++ +++.+++.|||+||+++++++++..|||||+.||++|||+||+++|||.
T Consensus 90 ~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il~~~I~D~ 169 (283)
T 2qmx_A 90 GLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADE 169 (283)
T ss_dssp ECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEEESSCSSC
T ss_pred cCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCceecccCcCC
Confidence 999999999999999999999999999998 8899999999999999998877889999999999999999999999999
Q ss_pred CCCceEEEEEeeCCCC--------CCCCCCcEEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCC
Q 048784 160 CDNVTRFLMLAREPII--------PGTDRPFKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNS 231 (282)
Q Consensus 160 ~~N~TRF~vl~~~~~~--------~~~~~~~ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~ 231 (282)
++|+|||+||+|++.. +. .+.+||||+|+++|+||+|+++|++|+.+|||||||||||+++.
T Consensus 170 ~~N~TRF~vl~~~~~~~~~~~~~~~~-~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~--------- 239 (283)
T 2qmx_A 170 EWNITRFFCIAHENNPDISHLKVRPD-VARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKK--------- 239 (283)
T ss_dssp CCCEEEEEEEEETTCCCCTTSSSCCE-EEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSS---------
T ss_pred CCCeeeEEEEecCccccccccccCCC-CCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCC---------
Confidence 9999999999997643 21 12479999999999999999999999999999999999999984
Q ss_pred CCCcceeEEEEEEeecCCCcHHHHHHHHHHHhhcCceEEEccccCC
Q 048784 232 GFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPID 277 (282)
Q Consensus 232 g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~~~~v~~LGsY~~~ 277 (282)
.|+|+||||++||.+|++++++|++|++.+.++|+|||||+.
T Consensus 240 ----~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~ 281 (283)
T 2qmx_A 240 ----AFEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV 281 (283)
T ss_dssp ----TTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred ----CcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence 599999999999999999999999999999999999999964
No 2
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=1.4e-89 Score=637.16 Aligned_cols=266 Identities=32% Similarity=0.488 Sum_probs=250.6
Q ss_pred CCCCcHHHHHHHhhCC--CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccC-CeEEEEEEEEeeee
Q 048784 1 GVRGAYSESAAEKAYP--NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRH-RLHIVGEVKFAVRH 77 (282)
Q Consensus 1 GP~GTfS~~Aa~~~~~--~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~-~l~I~~E~~l~I~~ 77 (282)
||+|||||+||+++|+ +.+++||.||++||++|++|++||||||||||++|+|.+|||+|.++ +++|+||+.+||+|
T Consensus 13 Gp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~IvgE~~l~I~h 92 (313)
T 3mwb_A 13 GPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITF 92 (313)
T ss_dssp SSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEEEEEEECCC
T ss_pred CCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEEEEEEeeeE
Confidence 9999999999999984 57899999999999999999999999999999999999999999985 89999999999999
Q ss_pred eeeecCCCCCCCccEEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcC-Cceeec
Q 048784 78 CLLANPGVKVEDLKRVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYG-LNILAE 154 (282)
Q Consensus 78 ~L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~yg-L~vl~~ 154 (282)
||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||+++++++++..|||||+.||++|| |+||++
T Consensus 93 ~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~Yg~L~il~~ 172 (313)
T 3mwb_A 93 VLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAE 172 (313)
T ss_dssp EEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHHCTTCEEEES
T ss_pred EEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHHcCChhhhhh
Confidence 999999999999999999999999999999987 68899999999999999987666899999999999999 999999
Q ss_pred ccccCCCCceEEEEEeeCCCCCCCCCCcEEEEEEEcC-CCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCC
Q 048784 155 DIQDDCDNVTRFLMLAREPIIPGTDRPFKTSIVFSLE-EGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGF 233 (282)
Q Consensus 155 ~I~d~~~N~TRF~vl~~~~~~~~~~~~~ktsi~~~~~-~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~ 233 (282)
+|||.++|+|||+||+|++..+...+.+||||+|+++ |+||+|+++|++|+.+|||||||||||+++.
T Consensus 173 ~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~----------- 241 (313)
T 3mwb_A 173 DIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQY----------- 241 (313)
T ss_dssp CCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSS-----------
T ss_pred cccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCC-----------
Confidence 9999999999999999976433334567999999996 9999999999999999999999999999984
Q ss_pred CcceeEEEEEEeecCCCcHHHHHHHHHHHhhcCceEEEccccCCCC
Q 048784 234 GKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPIDTT 279 (282)
Q Consensus 234 ~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~~~~v~~LGsY~~~~~ 279 (282)
.|+|+||||++||.+|++++++|++|++.+.++|+|||||+...
T Consensus 242 --~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~~ 285 (313)
T 3mwb_A 242 --LGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARADK 285 (313)
T ss_dssp --TTSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCEEEEEEECTTC
T ss_pred --CccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEEEEeeeecCcc
Confidence 59999999999999999999999999999999999999998653
No 3
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=3.2e-88 Score=615.92 Aligned_cols=253 Identities=28% Similarity=0.414 Sum_probs=242.7
Q ss_pred CCCCcHHHHHHHhhCCCCc--eeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeee
Q 048784 1 GVRGAYSESAAEKAYPNCE--AVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHC 78 (282)
Q Consensus 1 GP~GTfS~~Aa~~~~~~~~--~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~ 78 (282)
||+|||||+||+++|++.+ ++||+||++||++|++|++||||||||||++|+|.+|+|+|.+++++|+||+.+||+||
T Consensus 10 Gp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~ 89 (267)
T 2qmw_A 10 GPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIRLDINFA 89 (267)
T ss_dssp CSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEEEEECCEE
T ss_pred CCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEEEEEEeeeE
Confidence 9999999999999998754 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCccEEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeeccccc
Q 048784 79 LLANPGVKVEDLKRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQD 158 (282)
Q Consensus 79 L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d 158 (282)
|++++|.++++|++||||||||+||++||++.+++.+++.|||+||+++++ + .|||||+.||++|||+||+++|||
T Consensus 90 Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL~il~~~I~D 165 (267)
T 2qmw_A 90 LYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGFTPIDTHIED 165 (267)
T ss_dssp EECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTCCEEEECCCS
T ss_pred EEecCCCCHhhCCEEEEEhHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCCcEeeccccC
Confidence 999999999999999999999999999999977889999999999999996 3 999999999999999999999999
Q ss_pred CCCCceEEEEEeeCCCCCCCCCCcEEEEEEEc---CCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCc
Q 048784 159 DCDNVTRFLMLAREPIIPGTDRPFKTSIVFSL---EEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGK 235 (282)
Q Consensus 159 ~~~N~TRF~vl~~~~~~~~~~~~~ktsi~~~~---~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~ 235 (282)
+++|+|||+||+|++ .+ + .+||||+|++ +|+||+|+++|+.|+.+|||||||||||+++.
T Consensus 166 ~~~N~TRF~vl~~~~-~~--~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~------------- 228 (267)
T 2qmw_A 166 YPHNVTRFLVIKNQQ-QF--D-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQ------------- 228 (267)
T ss_dssp CSCCEEEEEEEESCC-CC--C-SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSS-------------
T ss_pred CCCCceEEEEEecCC-CC--C-CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCC-------------
Confidence 999999999999987 33 2 5799999999 89999999999999999999999999999984
Q ss_pred ceeEEEEEEeecCCCcHHHHHHHHHHHhhcCceEEEcccc
Q 048784 236 YFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYP 275 (282)
Q Consensus 236 ~~~y~F~vd~~g~~~~~~~~~al~~l~~~~~~v~~LGsY~ 275 (282)
.|+|+||||++ |.+|+.++++|++|++.+.++|+|||||
T Consensus 229 ~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~kiLGsY~ 267 (267)
T 2qmw_A 229 LGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEMIGAFN 267 (267)
T ss_dssp TTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred CccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEEEeeeC
Confidence 59999999999 9999999999999999999999999997
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=1.3e-86 Score=620.92 Aligned_cols=262 Identities=23% Similarity=0.349 Sum_probs=241.6
Q ss_pred CCCCcHHHHHHHhhC--------CCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccC-CeEEEEEE
Q 048784 1 GVRGAYSESAAEKAY--------PNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRH-RLHIVGEV 71 (282)
Q Consensus 1 GP~GTfS~~Aa~~~~--------~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~-~l~I~~E~ 71 (282)
||+|||||+||+++| ++.+++||.||++||++|++|+ ||||||||||++|+|.+|||+|.++ +++|+||+
T Consensus 13 Gp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~~~l~I~gE~ 91 (329)
T 3luy_A 13 GPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDAKDLVGFARV 91 (329)
T ss_dssp SSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhccCCcEEEEEE
Confidence 999999999999975 3568999999999999999999 9999999999999999999999874 89999999
Q ss_pred EEeeeeeeeecCCCCCCCccEEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCce
Q 048784 72 KFAVRHCLLANPGVKVEDLKRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNI 151 (282)
Q Consensus 72 ~l~I~~~L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~v 151 (282)
.+||+|||++++|.++++|++||||||||+||++||++++++.+++.|||+||++++ ++.|||||+.||++|||+|
T Consensus 92 ~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~~~~v~~~STA~AA~~v~----~~~AAIas~~AAelYgL~i 167 (329)
T 3luy_A 92 GVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHRLSTQPATSNAAACRDLI----PGEIAFGPAICGELYDITR 167 (329)
T ss_dssp EEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHTTCEEEECSSHHHHHHTCC----TTEEEEECTTHHHHSSEEE
T ss_pred EEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHcCCeEEeccCHHHHHHHhC----CCCceeCCHHHHHHcCCcc
Confidence 999999999999999999999999999999999999999889999999999999886 3589999999999999999
Q ss_pred eecccccCCCCceEEEEEeeCCCC-------CCCCCCcEEEEEEEcC--CCccHHHHHHHHHHHCCceeeeeeeeeCCCC
Q 048784 152 LAEDIQDDCDNVTRFLMLAREPII-------PGTDRPFKTSIVFSLE--EGPGVLFKALAVFALRQINLTKIESRPLRNQ 222 (282)
Q Consensus 152 l~~~I~d~~~N~TRF~vl~~~~~~-------~~~~~~~ktsi~~~~~--~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~ 222 (282)
|+++|||.++|+|||+||+|++.. ....+.+|||++|.++ |+||+|+++|++|+.+|||||||||||+++
T Consensus 168 La~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~- 246 (329)
T 3luy_A 168 IGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKG- 246 (329)
T ss_dssp EESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETT-
T ss_pred ccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCC-
Confidence 999999999999999999987532 1111235888887775 689999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHhhcCceEEEccccCCCCC
Q 048784 223 PLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPIDTTI 280 (282)
Q Consensus 223 ~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~~~~v~~LGsY~~~~~~ 280 (282)
+.|+|+||||++||.+|++++++|++|++.+.++|+|||||+..+.
T Consensus 247 ------------~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~kiLGsYp~~~~~ 292 (329)
T 3luy_A 247 ------------RTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAVYPRREHP 292 (329)
T ss_dssp ------------EEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEEEEEEECCCCC
T ss_pred ------------CCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEEEeeccCCCcC
Confidence 4699999999999999999999999999999999999999987654
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.84 E-value=2e-21 Score=185.33 Aligned_cols=81 Identities=30% Similarity=0.422 Sum_probs=76.9
Q ss_pred CCCcEEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHH
Q 048784 179 DRPFKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNAL 258 (282)
Q Consensus 179 ~~~~ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al 258 (282)
++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++. .|+|.|||||+ |.+|+++++||
T Consensus 30 tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~-------------~~eY~FfVD~e-h~~d~~v~~AL 95 (429)
T 1phz_A 30 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLN-------------KDEYEFFTYLD-KRTKPVLGSII 95 (429)
T ss_dssp CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSC-------------TTEEEEEECBC-GGGHHHHHHHH
T ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCC-------------CccEEEEEEEe-eCCCHHHHHHH
Confidence 34579999999999999999999999999999999999999984 59999999999 99999999999
Q ss_pred HHHHhh-cCceEEEcc
Q 048784 259 RHLKEF-ATFLRVLGS 273 (282)
Q Consensus 259 ~~l~~~-~~~v~~LGs 273 (282)
++|++. +.++|+||+
T Consensus 96 ~eL~~~~~~~vkiLGs 111 (429)
T 1phz_A 96 KSLRNDIGATVHELSR 111 (429)
T ss_dssp HHHHHTTCCCEEEEET
T ss_pred HHHHhhccceEEECCC
Confidence 999999 999999999
No 6
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.29 E-value=0.0022 Score=46.74 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=49.7
Q ss_pred cEEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHH
Q 048784 182 FKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHL 261 (282)
Q Consensus 182 ~ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l 261 (282)
..+.|.+..+|+||.|.++.+.|+++|+|+..+...+..+ .....|-+++. +...+.++++.|
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--------------~~~~~i~v~~~---~~~~l~~l~~~L 66 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--------------IFTCNLMIFVK---NTDKLTTLMDKL 66 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--------------EEEEEEEEEES---SHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--------------EEEEEEEEEEC---CHHHHHHHHHHH
Confidence 3567888889999999999999999999999999876422 12233333332 235678889999
Q ss_pred HhhcC
Q 048784 262 KEFAT 266 (282)
Q Consensus 262 ~~~~~ 266 (282)
++...
T Consensus 67 ~~~~~ 71 (88)
T 2ko1_A 67 RKVQG 71 (88)
T ss_dssp TTCTT
T ss_pred hcCCC
Confidence 86643
No 7
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.05 E-value=0.0055 Score=45.08 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=33.4
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCC
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLR 220 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~ 220 (282)
+..|.+..+|+||.|.++.+.++++|+|+..+......
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~ 42 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD 42 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc
Confidence 45677888999999999999999999999999887643
No 8
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.73 E-value=0.011 Score=49.55 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=51.8
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLK 262 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~ 262 (282)
+..|.+.+.|+||.|.++.+.|+.+|+|+..+...|.... .-....+-+++ ++..+.++.+.|+
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~--------------~~sriti~V~~--d~~~leqI~kqL~ 66 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDP--------------TLSRMTIQTVG--DEKVLEQIEKQLH 66 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCS--------------SEEEEEEEEES--CHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCC--------------CEEEEEEEEec--cHHHHHHHHHHHc
Confidence 3456677789999999999999999999999999997641 13444455554 3567788888888
Q ss_pred hhcC
Q 048784 263 EFAT 266 (282)
Q Consensus 263 ~~~~ 266 (282)
+.-.
T Consensus 67 Kl~d 70 (164)
T 2f1f_A 67 KLVD 70 (164)
T ss_dssp HSTT
T ss_pred CCCC
Confidence 7644
No 9
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.50 E-value=0.016 Score=48.51 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=51.3
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLK 262 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~ 262 (282)
|-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|+... .-..+-+-+++. +..+.++.+.|.
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~--------------g~sritivV~~d--~~~leql~kQL~ 67 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDP--------------TLSRMTLVTNGP--DEIVEQITKQLN 67 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSST--------------TEEEEEEEEEEC--HHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCC--------------CEEEEEEEEecc--HHHHHHHHHHhc
Confidence 4567777889999999999999999999999999997642 123344444443 567788888888
Q ss_pred hhcC
Q 048784 263 EFAT 266 (282)
Q Consensus 263 ~~~~ 266 (282)
+.-.
T Consensus 68 Kl~d 71 (165)
T 2pc6_A 68 KLIE 71 (165)
T ss_dssp HSTT
T ss_pred CCCC
Confidence 7644
No 10
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=96.29 E-value=0.022 Score=48.85 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=51.5
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLK 262 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~ 262 (282)
+-.|.+.++|+||.|.++.+.|+.+|+|+..+-.-|+... .-..+.|-+++. +..++++.+.|.
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~--------------gisRitIvV~g~--e~~ieqL~kQL~ 92 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETP--------------GLSRLVIMVKGD--DKTIEQIEKQAY 92 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSST--------------TEEEEEEEEEEC--TTHHHHHHHHHT
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCC--------------CEEEEEEEEECC--HHHHHHHHHHhc
Confidence 4467777789999999999999999999999999887652 123444444553 466777888887
Q ss_pred hhcCceE
Q 048784 263 EFATFLR 269 (282)
Q Consensus 263 ~~~~~v~ 269 (282)
+.-.-++
T Consensus 93 KLidVik 99 (193)
T 2fgc_A 93 KLVEVVK 99 (193)
T ss_dssp TSTTEEE
T ss_pred CcCceEE
Confidence 7544333
No 11
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=94.97 E-value=0.13 Score=41.58 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=48.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHhhc
Q 048784 186 IVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFA 265 (282)
Q Consensus 186 i~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~~ 265 (282)
|-+...|++|.|.+++++++.+++|+..++.+|. + + +|+.++. .+...+..+...+++..
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g-----------------~-i~~~~~~-~~~~~~~~L~~~l~~i~ 62 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-G-----------------R-IYLNFAE-LEFESFSSLMAEIRRIA 62 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-T-----------------E-EEEEECC-CCHHHHHHHHHHHHHST
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-C-----------------E-EEEEEEe-CCHHHHHHHHHHHHcCC
Confidence 5566789999999999999999999999999874 2 2 6677764 34456777888887765
Q ss_pred Cc
Q 048784 266 TF 267 (282)
Q Consensus 266 ~~ 267 (282)
..
T Consensus 63 ~~ 64 (190)
T 2jhe_A 63 GV 64 (190)
T ss_dssp TE
T ss_pred Ce
Confidence 53
No 12
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=94.86 E-value=0.092 Score=41.89 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=43.3
Q ss_pred EEEE-EEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHH
Q 048784 184 TSIV-FSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLK 262 (282)
Q Consensus 184 tsi~-~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~ 262 (282)
++++ +.++|+||.|.++++.++++|||+..+.+.+ .. ......++++ ..++|++.|+
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~---------------~~~~~~i~~~------d~~~A~~~L~ 129 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NN---------------NVANVVIRPS------NMDKCIEVLK 129 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ET---------------TEEEEEEEES------CHHHHHHHHH
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cC---------------CcEEEEEEeC------CHHHHHHHHH
Confidence 4444 4789999999999999999999998877765 22 1344555663 2346777777
Q ss_pred hhcC
Q 048784 263 EFAT 266 (282)
Q Consensus 263 ~~~~ 266 (282)
+...
T Consensus 130 ~~g~ 133 (144)
T 2f06_A 130 EKKV 133 (144)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 6543
No 13
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.36 E-value=0.53 Score=39.26 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=31.1
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeee
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRP 218 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP 218 (282)
.+.|.+..+|+||.|.++.+.|+.+|+|+..+...-
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t 128 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 128 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhc
Confidence 456667779999999999999999999999887663
No 14
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=93.98 E-value=0.24 Score=39.40 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=29.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeee
Q 048784 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIESRP 218 (282)
Q Consensus 184 tsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP 218 (282)
..|.+.++|+||.|.++.+.|+++|||+..|.--+
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 34666779999999999999999999999886544
No 15
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=93.88 E-value=0.48 Score=38.46 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=61.6
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeee
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLA 81 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a 81 (282)
+.|+..+....+.+++.+++.+.+..+++++|.+|++|+.+.+-.. ....+ .......+.+.+....+...+++.
T Consensus 115 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~ 189 (226)
T 1wdn_A 115 KSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPN-ILYFI----KTAGNGQFKAVGDSLEAQQYGIAF 189 (226)
T ss_dssp ETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHH-HHHHH----HTTTTTTEEEEEEEEEEEEEEEEE
T ss_pred EcCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHH-HHHHH----HhCCCCceEEecCCcccCceEEEE
Confidence 3577777777777778889999999999999999999988875221 11111 111113567777665566667776
Q ss_pred cCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 82 NPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 82 ~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
+++ +|+-..+..++|.+.
T Consensus 190 ~k~-----------~~~l~~~~~~~l~~l 207 (226)
T 1wdn_A 190 PKG-----------SDELRDKVNGALKTL 207 (226)
T ss_dssp CTT-----------CHHHHHHHHHHHHHH
T ss_pred eCC-----------CHHHHHHHHHHHHHH
Confidence 654 466666666666653
No 16
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=93.81 E-value=0.09 Score=45.88 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=44.1
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCC-CCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLR-NQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHL 261 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~-~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l 261 (282)
..+|.+...|+||.|.++++.++++++|+..|..+..+ +. + ......+||++.. .+++++++|
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~-------~-----ng~A~I~IEV~d~----~Le~LL~kL 67 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE-------H-----EGKALIYFEIEGG----DFEKILERV 67 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST-------T-----TTEEEEEEEECSS----CHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCC-------c-----CCEEEEEEEECCC----CHHHHHHHH
Confidence 46788889999999999999999999999999976644 21 0 0122333777653 456778888
Q ss_pred Hhh
Q 048784 262 KEF 264 (282)
Q Consensus 262 ~~~ 264 (282)
++.
T Consensus 68 rkI 70 (223)
T 1y7p_A 68 KTF 70 (223)
T ss_dssp HTC
T ss_pred hCC
Confidence 754
No 17
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=93.37 E-value=0.44 Score=39.04 Aligned_cols=92 Identities=17% Similarity=0.019 Sum_probs=61.5
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeec
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLAN 82 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~ 82 (282)
.|+..+....+..++.+++.+.+..+++++|.+|++|+.+..-. .+. ..+......++.+.+...-+...+++.+
T Consensus 124 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3h7m_A 124 RDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMV---PGM--YIIRENRLTNLVPVARSIAAQRYGYAVR 198 (234)
T ss_dssp TTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHH---HHH--HHHHHTTCTTEEEEEEEEEEEEEEEEEE
T ss_pred eCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccH---HHH--HHHHhcCCCceEEeccccCCCceEEEEe
Confidence 56776666666666678999999999999999999999887522 111 1111111135777777666777777766
Q ss_pred CCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 83 PGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 83 ~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
++ +|+-..+..+.|.+.
T Consensus 199 ~~-----------~~~l~~~l~~~l~~l 215 (234)
T 3h7m_A 199 QG-----------DAELLARFSEGLAIL 215 (234)
T ss_dssp TT-----------CHHHHHHHHHHHHHH
T ss_pred CC-----------CHHHHHHHHHHHHHH
Confidence 54 466666666666653
No 18
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=93.02 E-value=0.61 Score=39.06 Aligned_cols=77 Identities=17% Similarity=0.055 Sum_probs=55.5
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeec
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLAN 82 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~ 82 (282)
.|+..+....+.+++.+++.+.+..+++++|.+|++|+.+..-.. . ...+.......+.+.++...+...+++.+
T Consensus 137 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (249)
T 4f3p_A 137 TGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPN-V----LFFVNNEGKGRVKVAGAPVSGDKYGIGFP 211 (249)
T ss_dssp TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHH-H----HHHHHTTTTTTEEEEEEEEEEEEEEEEEE
T ss_pred CCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHH-H----HHHHHhCCCCceEEecCCCCCccEEEEEc
Confidence 577777777777788899999999999999999999999875321 1 11111111245778888777777788777
Q ss_pred CC
Q 048784 83 PG 84 (282)
Q Consensus 83 ~~ 84 (282)
++
T Consensus 212 k~ 213 (249)
T 4f3p_A 212 KG 213 (249)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 19
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=92.76 E-value=0.23 Score=42.61 Aligned_cols=92 Identities=16% Similarity=0.238 Sum_probs=63.3
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEE-eeeeeeee
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKF-AVRHCLLA 81 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l-~I~~~L~a 81 (282)
.|+..+....+.+++.+++.+.+..+++++|.+|++|+++..-. .....+.. ....++.+.+.... +...+++.
T Consensus 146 ~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~-~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~ 220 (267)
T 3mpk_A 146 RNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQI-SASYYVNR----YFAGKLRIASALDLPPAEIALAT 220 (267)
T ss_dssp TTCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHH-HHHHHHHH----HCTTTEEEEEECSSCCEEEEEEE
T ss_pred CCchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHH-HHHHHHHh----cCCCceEEEeccCCCceeEEEEE
Confidence 57777777777788899999999999999999999999987621 11111111 11245777776543 55566666
Q ss_pred cCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 82 NPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 82 ~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
+++ +|+-..+..+.|.+.
T Consensus 221 ~k~-----------~~~l~~~ln~~l~~l 238 (267)
T 3mpk_A 221 TRG-----------QTELMSILNKALYSI 238 (267)
T ss_dssp ETT-----------CHHHHHHHHHHHHTS
T ss_pred cCC-----------CHHHHHHHHHHHHhC
Confidence 653 677777777777763
No 20
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=92.66 E-value=0.19 Score=42.07 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=60.6
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeee
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLA 81 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a 81 (282)
+.|+..+....+.+++.+++.+++..+++++|.+|++|+.+..-. .....+ .......+.+.++...+...+++.
T Consensus 121 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 195 (245)
T 3k4u_A 121 KFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLP-FNVAFM----AQKGQGYLVHLDTSLTYEPLGWAI 195 (245)
T ss_dssp ETTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHH-HHHHHH----HHTTTTTEEEECCCCSCEEECCEE
T ss_pred eCCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHH-HHHHHH----hcCCccceeecCCCcccccEEEEE
Confidence 368888888888888899999999999999999999999887521 111111 111112344444444445556666
Q ss_pred cCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 82 NPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 82 ~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
+++ +|+-..+..++|.+.
T Consensus 196 ~k~-----------~~~l~~~ln~~l~~l 213 (245)
T 3k4u_A 196 KKG-----------DPDFLNWLNHFLAQI 213 (245)
T ss_dssp CTT-----------CHHHHHHHHHHHHHH
T ss_pred cCC-----------CHHHHHHHHHHHHHH
Confidence 553 566666666666653
No 21
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=92.40 E-value=0.37 Score=40.01 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=60.3
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccc---cCCeEEEEEEE-Eeeeee
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLL---RHRLHIVGEVK-FAVRHC 78 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~---~~~l~I~~E~~-l~I~~~ 78 (282)
.|+..+....+.+++.+++.+.+..+++++|.+|++|+.+..-. .....+.. ...+. ..++.+.+... .+...+
T Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~-~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~ 194 (237)
T 3kzg_A 117 KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYE-AAKYWMAS-EPYAYKLIGKKYKLIGKKISIGEGYS 194 (237)
T ss_dssp TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHH-HHHHHHTT-SSTTHHHHCCSEEEEEEEEECTTCBC
T ss_pred cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcH-HHHHHHHh-CCccccccCCceEEecCccccCccEE
Confidence 56665666666677789999999999999999999999887522 11111111 00000 22677777644 444555
Q ss_pred eeecCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 79 LLANPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 79 L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
++.+++ +|+-..+-.++|.+.
T Consensus 195 ~~~~k~-----------~~~l~~~l~~~l~~l 215 (237)
T 3kzg_A 195 IMANPD-----------QFVLIKKINKILLEM 215 (237)
T ss_dssp CEECGG-----------GHHHHHHHHHHHHHH
T ss_pred EEEcCC-----------CHHHHHHHHHHHHHH
Confidence 555543 577777777777653
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=92.25 E-value=0.44 Score=40.14 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=30.7
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeee
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESR 217 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSR 217 (282)
++.|.+.-+|+||-++++-+.|+.+|+|+..+...
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 45666777999999999999999999999988765
No 23
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=92.20 E-value=0.8 Score=39.58 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=60.9
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceecccccccc-CCeEEEEEEEEeeee-ee
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLR-HRLHIVGEVKFAVRH-CL 79 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~-~~l~I~~E~~l~I~~-~L 79 (282)
+.|+..+....+.+++.+++.+.+..+++++|.+|++|+++..-. .... .+.+ .++.+.+...-+..+ ++
T Consensus 159 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~-~~~~-------~~~~~~~l~~~~~~~~~~~~~~~ 230 (292)
T 1xt8_A 159 NKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNT-LLFA-------WVKDHPDFKMGIKELGNKDVIAP 230 (292)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHH-HHHH-------HHHHCTTEEEEEEEEEEEEEECC
T ss_pred eCCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecHH-HHHH-------HHHhCCCeEEcccccccCceeEE
Confidence 467888877777777888999999999999999999999887521 1111 1111 236676655555555 66
Q ss_pred eecCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 80 LANPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 80 ~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
+.+++ +|+-..+..++|.+.
T Consensus 231 ~~~k~-----------~~~l~~~l~~~l~~l 250 (292)
T 1xt8_A 231 AVKKG-----------DKELKEFIDNLIIKL 250 (292)
T ss_dssp EEETT-----------CHHHHHHHHHHHHHH
T ss_pred EEeCC-----------CHHHHHHHHHHHHHH
Confidence 65543 466666767777653
No 24
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=91.78 E-value=0.91 Score=41.06 Aligned_cols=67 Identities=7% Similarity=0.123 Sum_probs=48.6
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecC-----CCcHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEAS-----MADQKAQNA 257 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~-----~~~~~~~~a 257 (282)
+..|.+..+|+||-..++-+.++++|+|+..+...-.... ..|++-++++.. .+.+.+++.
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~--------------g~Ffmr~~~~~~~~~~~~~~~~L~~~ 75 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLS--------------ARFFVRCVFHATDDADALRVDALRRE 75 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTT--------------TEEEEEEEEEECC----CCHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCC--------------CceEEEEEEEccCcccCCCHHHHHHH
Confidence 4567778899999999999999999999999998832221 244555566554 234567777
Q ss_pred HHHHHh
Q 048784 258 LRHLKE 263 (282)
Q Consensus 258 l~~l~~ 263 (282)
++.+.+
T Consensus 76 f~~la~ 81 (292)
T 3lou_A 76 FEPIAE 81 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 25
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=90.85 E-value=0.88 Score=37.62 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=57.3
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceecccccccc-CCeEEEEEEEEeee----e
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLR-HRLHIVGEVKFAVR----H 77 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~-~~l~I~~E~~l~I~----~ 77 (282)
.|+..+....+ +++.+++.+.+..+++++|.+|++|+++..-. ...- ++.+ ..+.+.+....+.. .
T Consensus 125 ~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 195 (242)
T 3del_B 125 TGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPS-IAQV-------VLKDFPALSTATIDLPEDQWVLGY 195 (242)
T ss_dssp TTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEECHH-HHHH-------HGGGCTTEEEEEEECCGGGCEEEE
T ss_pred cCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEecHH-HHHH-------HHHhCCCeEEecCccCcccccceE
Confidence 57777777766 67889999999999999999999999887522 1111 1112 23666664333333 4
Q ss_pred eeeecCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 78 CLLANPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 78 ~L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
+++.+++ +|+-..+..++|.+.
T Consensus 196 ~~~~~k~-----------~~~l~~~l~~~l~~l 217 (242)
T 3del_B 196 GIGVASD-----------RPALALKIEAAVQEI 217 (242)
T ss_dssp EEEEETT-----------CHHHHHHHHHHHHHH
T ss_pred EEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 5555543 566667777777653
No 26
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=89.10 E-value=2.5 Score=38.06 Aligned_cols=68 Identities=9% Similarity=0.101 Sum_probs=48.3
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecC---CCcHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEAS---MADQKAQNALR 259 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~---~~~~~~~~al~ 259 (282)
+..|.+.-+|+||-..++-+.++++|+|+..+...-.... ..|++-+.++.. .+.+.+++.++
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~--------------g~Ffmr~~~~~~~~~~~~~~L~~~f~ 71 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTES--------------GHFFMRVVFNAAAKVIPLASLRTGFG 71 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTT--------------TEEEEEEEEEESSCCCCHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCC--------------CceEEEEEEEcCCCCCCHHHHHHHHH
Confidence 4567777899999999999999999999999988643221 134444455432 33467788888
Q ss_pred HHHhh
Q 048784 260 HLKEF 264 (282)
Q Consensus 260 ~l~~~ 264 (282)
.+.+.
T Consensus 72 ~la~~ 76 (288)
T 3obi_A 72 VIAAK 76 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=88.98 E-value=2.1 Score=38.50 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=47.6
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecC--CCcHHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEAS--MADQKAQNALRH 260 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~--~~~~~~~~al~~ 260 (282)
+..|.+..+|+||-..++-+.|+++|+|+..+.+.-.... ..|+.-++++.. .+.+.+++.++.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~--------------g~Ffmr~~~~~~~~~~~~~L~~~f~~ 73 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQS--------------GRFFIRVEFRQPDDFDEAGFRAGLAE 73 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT--------------TEEEEEEEEECCSSCCHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCC--------------CeeEEEEEEecCCCCCHHHHHHHHHH
Confidence 3457777899999999999999999999999988732221 134444455432 334667778877
Q ss_pred HHhh
Q 048784 261 LKEF 264 (282)
Q Consensus 261 l~~~ 264 (282)
+.+.
T Consensus 74 la~~ 77 (286)
T 3n0v_A 74 RSEA 77 (286)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 7653
No 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=88.98 E-value=2.9 Score=37.95 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=48.4
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecC---CCcHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEAS---MADQKAQNALR 259 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~---~~~~~~~~al~ 259 (282)
+..|.+..+|+||-..++-+.++++|+|+..+...-.+.. ..|+.-++++.. .+.+.+++.++
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~--------------g~FfMr~~~~~~~~~~~~~~L~~~l~ 87 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLS--------------GWFFMRHEIRADTLPFDLDGFREAFT 87 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTT--------------TEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCC--------------CeEEEEEEEecCCCCCCHHHHHHHHH
Confidence 5567778899999999999999999999999888743321 134444555542 33467777887
Q ss_pred HHHh
Q 048784 260 HLKE 263 (282)
Q Consensus 260 ~l~~ 263 (282)
.+.+
T Consensus 88 ~la~ 91 (302)
T 3o1l_A 88 PIAE 91 (302)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 29
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=88.36 E-value=0.75 Score=38.75 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=38.4
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
..|+..+....+.++..+++.+++..+++.+|.+|++|+.+..
T Consensus 129 ~~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 129 QKGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred cCCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 3588888888888899999999999999999999999998864
No 30
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=88.12 E-value=1.8 Score=36.13 Aligned_cols=88 Identities=16% Similarity=0.030 Sum_probs=57.1
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceecccc-cccc-CCeEEEEEEEEeee---
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYD-LLLR-HRLHIVGEVKFAVR--- 76 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d-~L~~-~~l~I~~E~~l~I~--- 76 (282)
+.|+..+..... +++.+++.+.+..+++++|.+|++|+++..-. ++. .+.+ .++.+.++..-+..
T Consensus 145 ~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (268)
T 3qax_A 145 QTGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPS---------VGRVVLKDFPNLVATRLELPPECWVL 214 (268)
T ss_dssp ETTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEECHH---------HHHHHGGGCTTEEEEEEECCGGGCBC
T ss_pred ecCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCcEEecCccCcccccc
Confidence 357777776665 66788999999999999999999999887521 111 1122 23666664433333
Q ss_pred -eeeeecCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 77 -HCLLANPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 77 -~~L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
.+++.+++ +|+-..+-.++|.+.
T Consensus 215 ~~~~~~~k~-----------~~~l~~~l~~~l~~l 238 (268)
T 3qax_A 215 GCGLGVAKD-----------RPEEIQTIQQAITDL 238 (268)
T ss_dssp CEEEEECTT-----------CHHHHHHHHHHHHHH
T ss_pred cEEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 45555543 566666766666653
No 31
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=87.82 E-value=2.2 Score=35.36 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=29.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeee
Q 048784 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIESRP 218 (282)
Q Consensus 184 tsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP 218 (282)
..|.+..+|+||.+.++-+.|+.+|+|+..+.---
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~ 41 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM 41 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee
Confidence 44666779999999999999999999998765443
No 32
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=87.67 E-value=0.62 Score=37.80 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=35.2
Q ss_pred CCcHHHHHHHhhCCC-CceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 3 RGAYSESAAEKAYPN-CEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~-~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
.|+..+.-..+.+++ .+++.+.+..+++++|.+|++|+.+..
T Consensus 116 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 158 (227)
T 3tql_A 116 GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGD 158 (227)
T ss_dssp TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESC
T ss_pred ecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeC
Confidence 567776666666666 889999999999999999999998875
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=87.62 E-value=1.6 Score=39.31 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=46.7
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCC-CcHHHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASM-ADQKAQNALRHL 261 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~-~~~~~~~al~~l 261 (282)
+..|.+.-+|+||-..++-+.++++|+|+..+........ ..|+.-++++... +...+++.++.+
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~--------------g~Ffmr~~~~~~~~~~~~L~~~f~~l 72 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDS--------------SKFFMRVSVEIPVAGVNDFNSAFGKV 72 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT--------------TEEEEEEEEECCC---CHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCC--------------CeEEEEEEEEcCCCCHHHHHHHHHHH
Confidence 5567778899999999999999999999999988743321 1344444554422 123677777776
Q ss_pred Hhh
Q 048784 262 KEF 264 (282)
Q Consensus 262 ~~~ 264 (282)
.+.
T Consensus 73 a~~ 75 (287)
T 3nrb_A 73 VEK 75 (287)
T ss_dssp HGG
T ss_pred HHH
Confidence 543
No 34
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=87.21 E-value=2.3 Score=35.20 Aligned_cols=86 Identities=9% Similarity=0.069 Sum_probs=57.4
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceecccc-cccc--CCeEEEEEE-EEeeeee
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYD-LLLR--HRLHIVGEV-KFAVRHC 78 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d-~L~~--~~l~I~~E~-~l~I~~~ 78 (282)
.|+..+....+. +.+++.+.+..+++++|.+|++|+.+..-. ++. ++.+ .++.+.++. ..+...+
T Consensus 113 ~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (232)
T 3i6v_A 113 TATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRD---------YLVPIVAESGGELMFVGDDVPLGGGVG 181 (232)
T ss_dssp TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHTTTSSEEEEEEEECSSCEE
T ss_pred cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEEChH---------HHHHHHHhCCCCeEEecCCCCCCCcEE
Confidence 577777776665 678999999999999999999999887522 111 1111 357777753 3344556
Q ss_pred eeecCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 79 LLANPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 79 L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
++.+++ +|+-..+..++|.+.
T Consensus 182 ~~~~k~-----------~~~l~~~ln~~l~~l 202 (232)
T 3i6v_A 182 MGLRES-----------DGELRGKFDAAITSM 202 (232)
T ss_dssp EEECTT-----------CHHHHHHHHHHHHHH
T ss_pred EEEeCC-----------CHHHHHHHHHHHHHH
Confidence 665543 566666666666653
No 35
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=87.21 E-value=3 Score=39.54 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=49.5
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLK 262 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~ 262 (282)
...|++...|.||.|.++-++|+++|||+....++-... .-| -.+|+++- .+.-++++++|+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~---------------~~y-~~~d~~~~--~~~~~~~~~~l~ 404 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGE---------------VGY-LVMEADGV--GEASDAVLQEIR 404 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSS---------------CEE-EEEEECCC--HHHHHHHHHHHH
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCc---------------eEE-EEEEecCC--CCCcHHHHHHHH
Confidence 467888889999999999999999999999888765322 223 45699721 123356788887
Q ss_pred hhcCceE
Q 048784 263 EFATFLR 269 (282)
Q Consensus 263 ~~~~~v~ 269 (282)
+.-..+|
T Consensus 405 ~~~~~~~ 411 (416)
T 3k5p_A 405 EIPGTIR 411 (416)
T ss_dssp TSTTEEE
T ss_pred hCCCEEE
Confidence 6655443
No 36
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=86.89 E-value=0.69 Score=38.20 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.|+..+....+.+++.+++.+++..+++++|.+|++|+.+..
T Consensus 131 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 131 NPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp CTTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred cCCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 4688888888888888999999999999999999999998875
No 37
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=86.81 E-value=0.96 Score=37.87 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.|+..+....+.+++.+++.+.+..+++++|.+|++|+++..
T Consensus 156 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 198 (269)
T 4i62_A 156 QKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFE 198 (269)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEE
T ss_pred ecCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeC
Confidence 3678888888888888899999999999999999999999876
No 38
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=85.52 E-value=4.1 Score=32.77 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCC-------CCCCC
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPG-------VKVED 89 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~-------~~l~~ 89 (282)
+.+++++++..++++++.+|++|+++-++.-+.+- ... .....++. ....+++++++ .+++|
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r--~~~--~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~d 109 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISITAER--EQN--FDFSLPIF-------ASGLQIMVRNLESGTGDIRSIDD 109 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHH--HHH--SEECSCSE-------EEEEEEEEEC-----CCCCSGGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccccCHHH--Hcc--ceecccch-------hcceEEEEECCccccCCcCCHHH
Confidence 46788888999999999999999886332211000 000 11111221 11233333322 13334
Q ss_pred cc--EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 90 LK--RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 90 I~--~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
++ +|...... . ...+|.+.++..+.+.|..++.+++..+ .-.|++.....+.
T Consensus 110 L~g~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~~~~~ 163 (228)
T 2pyy_A 110 LPGKVVATTAGS-T-AATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDAPVLL 163 (228)
T ss_dssp CTTCEEEEETTS-H-HHHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred cCCCeEEEEcCc-H-HHHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 32 44432222 1 3467777778888888989999998876 4567787766554
No 39
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=85.43 E-value=1.3 Score=36.06 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.|+..+....+.+++.+++.+.+..+++++|.+|++|+++..
T Consensus 118 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 160 (229)
T 2y7i_A 118 ENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGD 160 (229)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEE
T ss_pred ecCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEec
Confidence 3577777777777778889999999999999999999998875
No 40
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=84.81 E-value=1.7 Score=36.63 Aligned_cols=75 Identities=8% Similarity=-0.015 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHhhCCC------CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccc--cCCeEEEEEEEE
Q 048784 2 VRGAYSESAAEKAYPN------CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLL--RHRLHIVGEVKF 73 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~------~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~--~~~l~I~~E~~l 73 (282)
+.|+..+....+.+++ .+++.+.+.++++++|.+|++|+.+..-.. .. .++. ..++.+.....-
T Consensus 143 ~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~ 214 (259)
T 4dz1_A 143 PRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPV-YF-------TFKNKKKMPIESRYVFKN 214 (259)
T ss_dssp ETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHH-HH-------HHHHTSCCCEEEEEEEEE
T ss_pred eCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHH-HH-------HHhccCCCceEeecccCC
Confidence 3577777777777664 688999999999999999999999876321 11 1111 124555555555
Q ss_pred eeeeeeeecCC
Q 048784 74 AVRHCLLANPG 84 (282)
Q Consensus 74 ~I~~~L~a~~~ 84 (282)
+...+++.+++
T Consensus 215 ~~~~~~~~~k~ 225 (259)
T 4dz1_A 215 VDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEETT
T ss_pred CceEEEEEeCC
Confidence 66667776664
No 41
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=84.81 E-value=3.5 Score=38.13 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=46.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCC---CcHHHHHHHHH
Q 048784 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASM---ADQKAQNALRH 260 (282)
Q Consensus 184 tsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~---~~~~~~~al~~ 260 (282)
..|.+.-+|+||-...+-+.++.+|+|+..++.....+ .|..-+.++... .-+.+++.++.
T Consensus 13 ~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~----------------~f~~~~~~~~~~~~~~~~~l~~~l~~ 76 (415)
T 3p96_A 13 VLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRH----------------RLTLGVLVCCPADVADGPALRHDVEA 76 (415)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETT----------------EEEEEEEEEECHHHHTSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECC----------------EeEEEEEEEecCCcCCHHHHHHHHHH
Confidence 34555669999999999999999999999998875332 233333444322 22567777777
Q ss_pred HH-hhcCceEE
Q 048784 261 LK-EFATFLRV 270 (282)
Q Consensus 261 l~-~~~~~v~~ 270 (282)
+. +....+++
T Consensus 77 ~~~~~~~~~~~ 87 (415)
T 3p96_A 77 AIRKVGLDVSI 87 (415)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHcCeEEEE
Confidence 74 33333433
No 42
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=84.33 E-value=10 Score=30.49 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=66.9
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCC-----CCCCCcc
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPG-----VKVEDLK 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~-----~~l~~I~ 91 (282)
+.+++++.++.++++++.+|++|+++-++.-+.+-.-...++ ...++ ......++++++ .+++|++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~--~s~p~-------~~~~~~~~~~~~~~~~i~~~~dL~ 115 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGIT--FTQPY-------FSSGIGLLIPGTATPLFRSVGDLK 115 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTSTTEE--ECCCC-------EEEEEEEEEEGGGTTTCSSGGGGT
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCccccccceeE--Eccce-------eecCeEEEEECCCCCCCCCHHHhC
Confidence 467888889999999999999999875443111100000011 11122 122344444433 1334442
Q ss_pred --EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 --RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 --~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....- .. ...+|.+.+...+.+.|..++.+++..+ ...|+++....+.
T Consensus 116 g~~v~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 167 (233)
T 1ii5_A 116 NKEVAVVRD-TT-AVDWANFYQADVRETNNLTAAITLLQKK--QVEAVMFDRPALI 167 (233)
T ss_dssp TCEEEEETT-SH-HHHHHHHTTCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHH
T ss_pred CCeEEEECC-cc-HHHHHHHcCCCeEEcCCHHHHHHHHHcC--CccEEEeCHHHHH
Confidence 4443222 11 1346766677778888999999999876 4667887766554
No 43
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=83.86 E-value=3.9 Score=38.42 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=45.6
Q ss_pred EEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHh
Q 048784 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKE 263 (282)
Q Consensus 184 tsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~ 263 (282)
..|++.-.|+||.+.++-+.|+++|||+......- ++ ..-+..+|++... +.-++++++|++
T Consensus 332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g---------------~~A~~vidvD~~~--~~~~~~l~~l~~ 393 (404)
T 1sc6_A 332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SA---------------QMGYVVIDIEADE--DVAEKALQAMKA 393 (404)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CS---------------SEEEEEEEEECCH--HHHHHHHHHHHT
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CC---------------CEEEEEEEcCCCC--CCCHHHHHHHhc
Confidence 45777788999999999999999999997666443 33 1345567998741 122467888876
Q ss_pred h
Q 048784 264 F 264 (282)
Q Consensus 264 ~ 264 (282)
.
T Consensus 394 i 394 (404)
T 1sc6_A 394 I 394 (404)
T ss_dssp S
T ss_pred C
Confidence 4
No 44
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=83.33 E-value=5.7 Score=38.49 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=49.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHHHCCceeeeee-eeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHH
Q 048784 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIE-SRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLK 262 (282)
Q Consensus 184 tsi~~~~~~~pG~L~~~L~~F~~~~INlt~Ie-SRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~ 262 (282)
..|++..+|+||.+.++.+.+.++|||+..+. +|..++ .+-+..++++.... +.+.+.|+++.
T Consensus 455 ~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~---------------~~a~~~i~vd~~~~-~~~l~~l~~~~ 518 (529)
T 1ygy_A 455 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG---------------PGATILLRLDQDVP-DDVRTAIAAAV 518 (529)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS---------------SCEEEEEEESSCCC-HHHHHHHHHHH
T ss_pred cEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC---------------CEEEEEEEECCCCC-HHHHHHHhcCC
Confidence 56778889999999999999999999999876 443333 25677888887664 33333444443
Q ss_pred hhcCceEEE
Q 048784 263 EFATFLRVL 271 (282)
Q Consensus 263 ~~~~~v~~L 271 (282)
.. .+++.+
T Consensus 519 ~i-~~v~~v 526 (529)
T 1ygy_A 519 DA-YKLEVV 526 (529)
T ss_dssp TE-EEEEEE
T ss_pred Cc-cEEEEE
Confidence 33 344443
No 45
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=83.17 E-value=1.7 Score=37.69 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.|+..+....+.+++.+++.+.+..+++++|.+|++|.++++
T Consensus 170 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 212 (291)
T 2yjp_A 170 NKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHD 212 (291)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred ecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEec
Confidence 4678888877877788889999999999999999999999986
No 46
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=82.78 E-value=0.83 Score=38.67 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=54.8
Q ss_pred CCcHHHHHHHhh-------CCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccc-cCCeEEEEEEEEe
Q 048784 3 RGAYSESAAEKA-------YPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLL-RHRLHIVGEVKFA 74 (282)
Q Consensus 3 ~GTfS~~Aa~~~-------~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~~~l~I~~E~~l~ 74 (282)
.|+..+....++ +++.+++.+.+..+++++|.+|++|+.+..-.. ... .+.... ...+.+.+...-+
T Consensus 134 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~-~~~----~~~~~~~~~~l~~~~~~~~~ 208 (268)
T 3hv1_A 134 AGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVY-ANY----YLEKSGVLDQYNVMPAGYEG 208 (268)
T ss_dssp TTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHH-HHH----HHHHTTCGGGEEEEECSSCC
T ss_pred eCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHH-HHH----HHHhCCCCCceEECCCCCCC
Confidence 466666544332 234688999999999999999999999875331 110 111111 1346666554444
Q ss_pred eeeeeeecCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 75 VRHCLLANPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 75 I~~~L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
...+++.+++ +|+-..+..++|.+.
T Consensus 209 ~~~~~~~~k~-----------~~~l~~~ln~~l~~l 233 (268)
T 3hv1_A 209 ESFAVGARKV-----------DKTLIKKINQGFETL 233 (268)
T ss_dssp EEECCEECTT-----------CHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCC-----------CHHHHHHHHHHHHHH
Confidence 5556655543 466666666666653
No 47
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=82.16 E-value=2.6 Score=35.99 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=34.4
Q ss_pred CCcHHHHHHHhhC----CCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 3 RGAYSESAAEKAY----PNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 3 ~GTfS~~Aa~~~~----~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
.|+..+.....++ .+.+++++.+..+++.+|.+|++|+++..
T Consensus 137 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~ 182 (287)
T 2vha_A 137 SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMD 182 (287)
T ss_dssp TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeC
Confidence 5777777666553 35688999999999999999999998875
No 48
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=82.03 E-value=5.6 Score=33.19 Aligned_cols=35 Identities=6% Similarity=-0.050 Sum_probs=29.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeee
Q 048784 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIESRP 218 (282)
Q Consensus 184 tsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP 218 (282)
.-|.+..+|+||-+.++-+.++.+|+|+..+.---
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~ 40 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC 40 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE
Confidence 34666779999999999999999999998665543
No 49
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=81.26 E-value=6 Score=31.71 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=46.1
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeec
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLAN 82 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~ 82 (282)
.|+..+....+ .+.+++.+.+..+++++|.+|++|+.+.+-.. ....+ .......+.+.+...-+...+++.+
T Consensus 119 ~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (228)
T 2pyy_A 119 AGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAPV-LLFYA----ANEGKGKVEIVGSILREESYGIILP 191 (228)
T ss_dssp TTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHHH-HHHHH----HTTTTTTEEEEEEEEEEEEECCEEC
T ss_pred cCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHHH-HHHHH----HhCCCCcEEEecccccceeEEEEEe
Confidence 45655554444 35678899999999999999999999986321 11111 1111124666666544555666665
Q ss_pred CC
Q 048784 83 PG 84 (282)
Q Consensus 83 ~~ 84 (282)
++
T Consensus 192 ~~ 193 (228)
T 2pyy_A 192 NN 193 (228)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 50
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=79.91 E-value=2.5 Score=34.63 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHhhC--CCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAY--PNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~--~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.|+..+....+.+ ++.+++.+.+..+++++|.+|++|+++..
T Consensus 117 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 161 (239)
T 1lst_A 117 LQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQD 161 (239)
T ss_dssp ETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred EcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 35777777776666 45788999999999999999999998875
No 51
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=79.61 E-value=2.3 Score=36.12 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHhhCC-CCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAYP-NCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~-~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.|+..+....+.++ ..+++.+.+..+++++|.+|++|+++.+
T Consensus 153 ~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~ 196 (272)
T 2pvu_A 153 QNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITD 196 (272)
T ss_dssp ETTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred EcCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeC
Confidence 357777776666656 6788899999999999999999999986
No 52
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=79.52 E-value=3.8 Score=35.24 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEE-EEEE-eeeeee
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVG-EVKF-AVRHCL 79 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~-E~~l-~I~~~L 79 (282)
+.|+..+....++ +.+++.+.+..+++.+|.+|++|.++++-.. ....+ ......++.+.+ ...- +....+
T Consensus 170 ~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~-~~~~~----~~~~~~~l~~~~~~~~~~~~~~~i 242 (283)
T 2yln_A 170 SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDELA-VLDYL----KKNPNAGVKIVWSAPADEKVGSGL 242 (283)
T ss_dssp CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEEHHH-HHHHH----HHSTTSSEEEEEECCGGGCEEECC
T ss_pred ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEecHHH-HHHHH----HhCCCCcEEEccCcccCCcccEEE
Confidence 4677766665554 5688999999999999999999999886321 11111 111111366655 3222 334455
Q ss_pred eecCCCCCCCccEEEechHHHHHHHHHHHhc
Q 048784 80 LANPGVKVEDLKRVLSHPQALAQCENTLTKL 110 (282)
Q Consensus 80 ~a~~~~~l~~I~~V~SHpqal~QC~~fl~~~ 110 (282)
+.+++ +|+-..+..++|.+.
T Consensus 243 ~~~k~-----------~~~l~~~i~~al~~l 262 (283)
T 2yln_A 243 IVNKG-----------NDEAVAKFSTAINEL 262 (283)
T ss_dssp EEESS-----------CHHHHHHHHHHHHHH
T ss_pred EEeCC-----------CHHHHHHHHHHHHHH
Confidence 55543 466666777777653
No 53
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=79.04 E-value=3 Score=34.67 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHhh-CCCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKA-YPNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~-~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.|+..+....+. +++.+++.+.+..+++++|.+|++|+++..
T Consensus 130 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 130 PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 4677777666654 455688999999999999999999998875
No 54
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=78.54 E-value=3.6 Score=33.46 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=27.9
Q ss_pred EEEEEE-cCCCccHHHHHHHHHHHCCceeeeeeee
Q 048784 184 TSIVFS-LEEGPGVLFKALAVFALRQINLTKIESR 217 (282)
Q Consensus 184 tsi~~~-~~~~pG~L~~~L~~F~~~~INlt~IeSR 217 (282)
+.|.+. ++++||.+.++++.|+++|||+-.|-.-
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 444443 6899999999999999999999988753
No 55
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=78.37 E-value=21 Score=29.91 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=65.3
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCC-C---CCCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPG-V---KVEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~-~---~l~~I~- 91 (282)
+.++++..++.++++++.+|++|... ++-.+-+-. ..+.-. .-+......++++++ . +++|++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~r~-----~~~~fs------~p~~~~~~~l~~~~~~~~i~~~~dL~g 139 (267)
T 3mpk_A 72 DFEIIGVDTVEELIAKLRSGEADMAG-ALFVNSARE-----SFLSFS------RPYVRNGMVIVTRQDPDAPVDADHLDG 139 (267)
T ss_dssp EEEEEEESSHHHHHHHHHHTSCSEEE-EEECCGGGT-----TTEEEC------SCSEEECEEEEEESSTTSCSSGGGCTT
T ss_pred eEEEEecCCHHHHHHHHHCCCccEEe-cccCChhhh-----cceEec------hhhccCceEEEEECCCCCCCCHHHHCC
Confidence 45778889999999999999999843 433221110 111001 112223345555544 1 233332
Q ss_pred -EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 -RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 -~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....- .. -..+|.+. +...+.+.|..++.+++..+ +..|+|+....+.
T Consensus 140 ~~i~v~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~G--rvDa~i~~~~~~~ 192 (267)
T 3mpk_A 140 RTVALVRN-SA-AIPLLQRRYPQAKVVTADNPSEAMLMVANG--QADAVVQTQISAS 192 (267)
T ss_dssp CEEEEETT-CT-HHHHHHHHCTTSEEEEESSHHHHHHHHHHT--SCSEEEEEHHHHH
T ss_pred CEEEEeCC-ch-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 3433322 11 23455553 56778889999999999887 5678888766554
No 56
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=78.33 E-value=2 Score=35.56 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=32.4
Q ss_pred CCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 3 RGAYSESAAEKAYP----NCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
.|+..+....++++ +.+++.+.+..+++++|.+|++|.++.+
T Consensus 155 ~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 200 (259)
T 2v25_A 155 QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVD 200 (259)
T ss_dssp TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEec
Confidence 46666665555443 2377899999999999999999999875
No 57
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=76.55 E-value=13 Score=30.32 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=68.7
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEE--eeeeeeeecCCC---CCCCcc
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKF--AVRHCLLANPGV---KVEDLK 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l--~I~~~L~a~~~~---~l~~I~ 91 (282)
+.++++. ++.+++.++.+|++|.++-++- .+-+ ....+.. .-+. .....++++++. +++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMS--------ITPS--RLKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBB--------CCHH--HHTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCc--------CCHH--HHhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 4577888 8999999999999998752221 1111 1112222 3333 455666666542 344442
Q ss_pred --EEEechHHHHHHHHHHHhc-CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHc
Q 048784 92 --RVLSHPQALAQCENTLTKL-GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIY 147 (282)
Q Consensus 92 --~V~SHpqal~QC~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~y 147 (282)
+|... ..... ..++.+. +...+.+.|..++.+++..+ +-.|+++....+..+
T Consensus 118 g~~i~v~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQ-TGTYQ-EAYLQSLSEVHIRSFDSTLEVLMEVMHG--KSPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEE-TTSHH-HHHHHHSTTCCEEEESSHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCEEEEE-cCcHH-HHHHHhCCCceEEEECCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 34332 22222 3445444 56677888999999998876 567888888776543
No 58
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=76.45 E-value=4.7 Score=33.05 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=65.2
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I~-- 91 (282)
+.+++++ ++.++++++.+|++|.++.++--+-+.. . .+.. ..-+......++++++. +++|++
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~-----~~~f-s~p~~~~~~~~~~~~~~~~~~~~dL~g~ 111 (237)
T 3kzg_A 44 TCTFEAY-IFDDLFPALKNREVDLVIASMIITDERK-----K-----HFIF-SLPYMESNSQYITTVDSKISTFDDLHGK 111 (237)
T ss_dssp EEEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGG-----G-----TCEE-CCCSBCCEEEEEEETTCSCCSGGGGTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHh-----c-----ccee-eeeeeecceEEEEECCCCCCCHHHhCCC
Confidence 3567777 7899999999999998764433221111 0 0000 01112233455555542 233432
Q ss_pred EEEechHHHHHHHHHHHhc-CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHH
Q 048784 92 RVLSHPQALAQCENTLTKL-GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAI 146 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ 146 (282)
+|... ..-.....+.+.. +...+.+.|..++.+++..+ +-.|++.....+..
T Consensus 112 ~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 164 (237)
T 3kzg_A 112 KIGVR-KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNN--QVDASLMDYEAAKY 164 (237)
T ss_dssp EEEEE-TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEEe-cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcC--CCCEEEeCcHHHHH
Confidence 44332 2223333444444 46778888999999999876 56778877766653
No 59
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=76.37 E-value=4.9 Score=38.38 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=44.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHh
Q 048784 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKE 263 (282)
Q Consensus 184 tsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~ 263 (282)
--+-|.+.|+||.|.++-.+|.++||++..+-.++..... ...+.+ ++ .-...+..+++++++|+.
T Consensus 360 yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~-----------~~~~~v-~~--th~~~e~~~~~~~~~~~~ 425 (444)
T 3mtj_A 360 YYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGE-----------EQVDII-LL--THVTLEKNVNAAIAKIEA 425 (444)
T ss_dssp EEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC-----------------CEEEE-EE--ECSEEHHHHHHHHHHHTT
T ss_pred eEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCC-----------CCceEE-EE--eccCCHHHHHHHHHHHhc
Confidence 3466677899999999999999999999988777643110 011222 22 222345689999999986
Q ss_pred h
Q 048784 264 F 264 (282)
Q Consensus 264 ~ 264 (282)
.
T Consensus 426 ~ 426 (444)
T 3mtj_A 426 L 426 (444)
T ss_dssp S
T ss_pred C
Confidence 5
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=76.35 E-value=18 Score=28.77 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=64.6
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC----CCCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV----KVEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~----~l~~I~- 91 (282)
+.++++. ++.++++++.+|++|+++-.+.-+-+-. ..++ ...++ .....+++++++. +++|++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~--~~~~--~~~p~-------~~~~~~~~~~~~~~~i~~~~dL~g 109 (226)
T 1wdn_A 42 DYELKPM-DFSGIIPALQTKNVDLALAGITITDERK--KAID--FSDGY-------YKSGLLVMVKANNNDVKSVKDLDG 109 (226)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSEEEEEEECCHHHH--TTSE--ECSCC-------EEEEEEEEEETTCCSCSSSTTTTT
T ss_pred EEEEEEC-CHHHHHHHHhCCCCCEEEEcCcCCHHHh--Cccc--cccch-------hcCceEEEEeCCCCCCCCHHHhCC
Confidence 4566766 7899999999999999875443111100 0000 11122 1223455555432 234442
Q ss_pred -EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 -RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 -~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....- .. ...||.+. +...+.+.|..++.+++..+ ...|++.....+.
T Consensus 110 ~~i~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 162 (226)
T 1wdn_A 110 KVVAVKSG-TG-SVDYAKANIKTKDLRQFPNIDNAYMELGTN--RADAVLHDTPNIL 162 (226)
T ss_dssp CEEEEETT-SH-HHHHHHHHCCCSEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHH
T ss_pred CEEEEEcC-Cc-HHHHHHHhCCCceEEEeCCHHHHHHHHHcC--CcCEEEeCcHHHH
Confidence 4544322 22 24567664 56677788888899988876 4667887776554
No 61
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=75.88 E-value=18 Score=28.67 Aligned_cols=114 Identities=8% Similarity=0.066 Sum_probs=65.1
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC----CCCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV----KVEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~----~l~~I~- 91 (282)
+.++++. ++.++++++.+|++|.++-++--+-+.. . .+... .-+.....+|+++++. ++++++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~-----~~~~s-~p~~~~~~~l~~~~~~~~~~~~~dL~g 109 (227)
T 3tql_A 42 VCTISNQ-PWDSLIPSLKLGKFDALFGGMNITTARQ-----K-----EVDFT-DPYYTNSVSFIADKNTPLTLSKQGLKG 109 (227)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTGG-----G-----TEEEC-SCSBCCEEEEEEETTSCCCCSTTTTTT
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhHH-----h-----heecc-cceeccceEEEEeCCCCCCCCHHHhCC
Confidence 3567775 7999999999999998763332111110 0 00000 1111223455555442 344443
Q ss_pred -EEEechHHHHHHHHHHHhc--C-CeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHH
Q 048784 92 -RVLSHPQALAQCENTLTKL--G-LVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAI 146 (282)
Q Consensus 92 -~V~SHpqal~QC~~fl~~~--~-~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ 146 (282)
+|....-... ..+|.+. . ...+.+.|..++.+++..+ +-+|+++....+..
T Consensus 110 ~~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 164 (227)
T 3tql_A 110 KIIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSG--RVDAVVGDTPLIKQ 164 (227)
T ss_dssp CEEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTT--SSSEEESCHHHHHH
T ss_pred CEEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcC--CcCEEEeChHHHHH
Confidence 4433322211 3445543 2 6778888999999988876 56788888776653
No 62
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=72.29 E-value=12 Score=30.59 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=24.2
Q ss_pred cCCCccHHHHHHHHHHHCCceeeeeee
Q 048784 190 LEEGPGVLFKALAVFALRQINLTKIES 216 (282)
Q Consensus 190 ~~~~pG~L~~~L~~F~~~~INlt~IeS 216 (282)
++++||.+.++++.|+++|||+-.|-.
T Consensus 23 ~~~~~G~~a~if~~La~~~InId~i~~ 49 (178)
T 2dtj_A 23 ISDKPGEAAKVFRALADAEINIDMVLQ 49 (178)
T ss_dssp EECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 589999999999999999999887754
No 63
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=72.12 E-value=7.7 Score=31.38 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=39.5
Q ss_pred cCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHh
Q 048784 190 LEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKE 263 (282)
Q Consensus 190 ~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~ 263 (282)
.+++||.+.++++.|+++|||+-.|-.-...... ......|.|+-+. .++..++|++++.
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~-----------g~~~isf~V~~~d---~~~a~~~L~~~~~ 83 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDP-----------SRQQMAFTVKKDF---AQEALEALEPVLA 83 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCT-----------TEEEEEEEEEGGG---HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCC-----------CceEEEEEEehHH---HHHHHHHHHHHHH
Confidence 4789999999999999999999988653321100 0125678876421 2344566666544
No 64
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=72.04 E-value=5.5 Score=32.17 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=32.5
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
.|+..+....+. +.+++.+.+..+++++|.+|++|..+.+
T Consensus 123 ~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 162 (233)
T 1ii5_A 123 RDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFD 162 (233)
T ss_dssp TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeC
Confidence 566666655544 5688999999999999999999998876
No 65
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=71.72 E-value=13 Score=30.64 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=40.7
Q ss_pred EcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHh
Q 048784 189 SLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKE 263 (282)
Q Consensus 189 ~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~ 263 (282)
.++++||.+.++++.|+++|||+-.|..-.+.... ......|.|+-+- -++..++|+++++
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~-----------g~~~isftv~~~~---~~~a~~~L~~~~~ 83 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVED-----------GKTDITFTCSRDV---GPAAVEKLDSLRN 83 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTT-----------CEEEEEEEEETTT---HHHHHHHHHHTHH
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccC-----------CccEEEEEEehhH---HHHHHHHHHHHHH
Confidence 46899999999999999999999988643222100 0135778887531 2345666666543
No 66
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=70.85 E-value=3.6 Score=33.13 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=39.0
Q ss_pred CCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHh
Q 048784 191 EEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKE 263 (282)
Q Consensus 191 ~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~ 263 (282)
++.||.+.++++.|+++|||+-.|.+-+ -...|.|+= . + ++.+++++|++
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~------------------~~Isf~v~~-~---~-~~~~il~~l~~ 78 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE------------------VGVSLTIDN-D---K-NLPDIVRALSD 78 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS------------------SEEEEEESC-C---T-THHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC------------------CEEEEEECC-h---H-HHHHHHHHHhc
Confidence 6789999999999999999999887532 157888872 1 2 56778888875
No 67
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=70.13 E-value=4.5 Score=34.40 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.3
Q ss_pred EcCCCccHHHHHHHHHHHCCceeeeeeeeeC
Q 048784 189 SLEEGPGVLFKALAVFALRQINLTKIESRPL 219 (282)
Q Consensus 189 ~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~ 219 (282)
.++++||.+.++++.|+++|||+-.|-.-++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s 72 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVS 72 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCC
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccc
Confidence 5789999999999999999999999965443
No 68
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=70.11 E-value=5.4 Score=38.79 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=50.9
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHH
Q 048784 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLK 262 (282)
Q Consensus 183 ktsi~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~ 262 (282)
+..+.+.++++||+|.++++.+. +-|+++++=|.. .. ..-..+|.+|.....+.++++++.|+
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~--~~-------------~~~~~~~~~e~~~~~~~~~~~~~~l~ 400 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA--DA-------------KNACIFVGVRLSRGLEERKEILQMLN 400 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC--CS-------------SBCEEEEEEECSSTHHHHHHHHHHHT
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeecc--CC-------------CeEEEEEEEEeCCcHHHHHHHHHHHH
Confidence 56788899999999999999887 789999998832 11 23355677776432467888999998
Q ss_pred hhcCce
Q 048784 263 EFATFL 268 (282)
Q Consensus 263 ~~~~~v 268 (282)
+....+
T Consensus 401 ~~g~~~ 406 (514)
T 1tdj_A 401 DGGYSV 406 (514)
T ss_dssp SSSCEE
T ss_pred hCCCCe
Confidence 765443
No 69
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=69.11 E-value=20 Score=29.28 Aligned_cols=111 Identities=9% Similarity=0.039 Sum_probs=68.3
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC--CCCCccEEE
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV--KVEDLKRVL 94 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~--~l~~I~~V~ 94 (282)
+.++++. ++..++.++.+|++|.++-++-. |-+ +...+... .-++.....++.+++. ++.. +|.
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------t~~--r~~~~~fs-~p~~~~~~~~~~~~~~~~dL~g--~ig 110 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMSI--------TDE--RDEVIDFT-QNYIPPTASSYVATSDGADLSG--IVA 110 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBC--------CHH--HHTTSEEE-EEEECCCEEEEEESSTTCCTTS--EEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCcC--------CHH--HHhhcCcc-cccccCCeEEEEECCChHHhCC--CEE
Confidence 4567775 89999999999999986643321 111 11122222 2344555667766542 3444 333
Q ss_pred echHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 95 SHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 95 SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
... ... -..+|.+.+...+.+.|..++.+++..+ +-.|+|+....+.
T Consensus 111 v~~-g~~-~~~~l~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 157 (232)
T 3i6v_A 111 AQT-ATI-QAGYIAESGATLVEFATPEETIAAVRNG--EADAVFADRDYLV 157 (232)
T ss_dssp EET-TSH-HHHHHHHSSSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred Eec-Cch-HHHHHHhcCCeEEEeCCHHHHHHHHHcC--CcCEEEEChHHHH
Confidence 322 112 2356666677888889999999999876 5678888776664
No 70
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=69.10 E-value=11 Score=30.59 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=37.0
Q ss_pred cCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHhh
Q 048784 190 LEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEF 264 (282)
Q Consensus 190 ~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~ 264 (282)
..+.||.+.++++.|+++|||+..|-+ +. -.-.|+|+-+ ...++++.|.+.
T Consensus 113 m~~~~Gv~a~i~~aL~~~~InI~~ist--se----------------~~is~vv~~~------d~~~av~~Lh~~ 163 (167)
T 2re1_A 113 MRSHVGVAAKIFRTLAEEGINIQMIST--SE----------------IKVSVLIDEK------YMELATRVLHKA 163 (167)
T ss_dssp CTTCCCHHHHHHHHHHHTTCCCCEEEE--CS----------------SEEEEEEEGG------GHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHCCCcEEEEEc--cc----------------CEEEEEEeHH------HHHHHHHHHHHH
Confidence 357899999999999999999998852 21 1467777652 234677777654
No 71
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=68.85 E-value=24 Score=30.28 Aligned_cols=88 Identities=9% Similarity=-0.120 Sum_probs=51.6
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCc--cE
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDL--KR 92 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I--~~ 92 (282)
.++++..+-.+.++++.+|++|+++......+. ..-...++.+++-....-...|+++++. +++|+ |+
T Consensus 36 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~Gk~ 108 (302)
T 3ix1_A 36 VDIVFPTNPTDPIQLTASGAIPLALSYQPDVIL-------ARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLT 108 (302)
T ss_dssp EEEECCSSTTHHHHHHHHTSCSEEEECHHHHHH-------HHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTSE
T ss_pred EEEecCCCCchHHHHHHCCCCCEEecCHHHHHH-------HHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCCCE
Confidence 577778877799999999999999864221111 1112245666666554444677776543 33444 35
Q ss_pred EEechH--HHHHHHHHHHhcCC
Q 048784 93 VLSHPQ--ALAQCENTLTKLGL 112 (282)
Q Consensus 93 V~SHpq--al~QC~~fl~~~~~ 112 (282)
|...+- .....+.+|.+.++
T Consensus 109 i~~~~~~~~~~~~~~~l~~~Gl 130 (302)
T 3ix1_A 109 VGYPGIPVNEPILKTMVEAAGG 130 (302)
T ss_dssp EEECSCTTHHHHHHHHHHHTTC
T ss_pred EEeCCCcchHHHHHHHHHHcCC
Confidence 544332 22335677777654
No 72
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=67.33 E-value=28 Score=27.33 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=58.4
Q ss_pred CCCCceeec-CCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC--------
Q 048784 15 YPNCEAVPC-EQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV-------- 85 (282)
Q Consensus 15 ~~~~~~~~~-~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~-------- 85 (282)
+|+.++... .+-.++.+++.+|++|+|++.-..... + +..+.......+++++++-
T Consensus 34 ~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~-------------~--~~~~~l~~~~~~~v~~~~~pl~~~~~i 98 (222)
T 4ab5_A 34 WPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQN-------------G--ISFQPLFAYEMVGICAPDHPLAAKNVW 98 (222)
T ss_dssp STTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCCCT-------------T--EEEEEEEEEEEEEEECTTSGGGGCSEE
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCCcC-------------C--eEEEEeecCcEEEEecCCChhhccCCc
Confidence 566554332 334678999999999999985321111 1 1222223333444444432
Q ss_pred CCCCc---cEEE-ech-HHHHHHHHHHHhcCCe--EEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 86 KVEDL---KRVL-SHP-QALAQCENTLTKLGLV--REAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 86 ~l~~I---~~V~-SHp-qal~QC~~fl~~~~~~--~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+++++ .-|. +.. ....+..+|+.+.+.. ...+.|...+..+++.+ ...+|.+...++
T Consensus 99 ~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~~~p~~~~~ 162 (222)
T 4ab5_A 99 TAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR---RGIAALPYWTVM 162 (222)
T ss_dssp CGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT---SCBEEEEHHHHH
T ss_pred CHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC---CeEEEcchHHhH
Confidence 23333 2333 111 2224455666665432 45566666677777765 345666666554
No 73
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=67.04 E-value=14 Score=30.06 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.0
Q ss_pred CCCcHHHHHHHh---hCCC--Ccee-ecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEK---AYPN--CEAV-PCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~---~~~~--~~~~-~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.|+..+....+ .++. .++. ...+..+++++|.+|++|+.+..
T Consensus 121 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 169 (246)
T 4eq9_A 121 VQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFD 169 (246)
T ss_dssp CTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEE
T ss_pred ecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEec
Confidence 457777776666 4553 3454 33599999999999999999875
No 74
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=66.33 E-value=67 Score=28.03 Aligned_cols=162 Identities=10% Similarity=0.023 Sum_probs=86.5
Q ss_pred CCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHcCCCCeEEEeeeecccccee--------------
Q 048784 2 VRGAYSESAAEKAY--------PNCEAVPCEQ-----FDTAFEAVERWLVDRAVLPIENSLGGSIH-------------- 54 (282)
Q Consensus 2 P~GTfS~~Aa~~~~--------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiENS~~G~V~-------------- 54 (282)
|+|+..++++..+- +..++..+++ -.+++++|..|.+|++++..-+ +.|.+.
T Consensus 10 ~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~-~~~~~p~~~~~~lPf~~~~~ 88 (301)
T 2pfz_A 10 PASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTN-FANEDPVYELDGLPFLATGY 88 (301)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGG-GTTTCGGGTGGGSTTSCCSH
T ss_pred CCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhh-ccccCchhhhhcCCCCCCCH
Confidence 67777777776542 2345544443 3799999999999999886321 111110
Q ss_pred -----------cccc-ccccCCeEEEEEEEEeeeeeeeecC-CCCCCCcc--EEEechHHHHHHHHHHHhcCCeEEEecC
Q 048784 55 -----------RNYD-LLLRHRLHIVGEVKFAVRHCLLANP-GVKVEDLK--RVLSHPQALAQCENTLTKLGLVREAVDD 119 (282)
Q Consensus 55 -----------~t~d-~L~~~~l~I~~E~~l~I~~~L~a~~-~~~l~~I~--~V~SHpqal~QC~~fl~~~~~~~~~~~s 119 (282)
+.++ .+.+.++++.+-...+-.+ +..++ =.+++|++ +|..- ... -..+++..++..++. +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lGa~pv~~-~ 163 (301)
T 2pfz_A 89 DASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVGAQPVTV-Q 163 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHTCEEEEC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcCCcceec-C
Confidence 0011 2234567777654433333 44432 23556665 55552 222 357888888877665 3
Q ss_pred HHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccCCCCce-EEEEEee
Q 048784 120 TAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVT-RFLMLAR 171 (282)
Q Consensus 120 Ta~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~~N~T-RF~vl~~ 171 (282)
.++....+..+ .-+|+..+.......++.-..+.+......++ .++++++
T Consensus 164 ~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 214 (301)
T 2pfz_A 164 QAELAQAMATG--VIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNK 214 (301)
T ss_dssp GGGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEEECCCCCCCEEEEEEEH
T ss_pred HHHHHHHHhcC--eeeEEecCccccccccHHHHhhhheecccccceeEEEEcH
Confidence 34444444443 34566777766555565433444433222233 3444444
No 75
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=66.28 E-value=24 Score=30.56 Aligned_cols=110 Identities=16% Similarity=0.032 Sum_probs=69.1
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEe---eeeeeeecCCCCCCCccEEE
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFA---VRHCLLANPGVKVEDLKRVL 94 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~---I~~~L~a~~~~~l~~I~~V~ 94 (282)
.++.++++++..+.+|.+|++|++|+-.. .|-..+.+.++.++-++--+ -.|.|+.+++ +...|++|-
T Consensus 46 ~~i~~mrg~~~RI~aL~~gk~D~aI~S~~--------aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~-~~~~ikrVG 116 (231)
T 2ozz_A 46 FYYAHMRGADIRVECLLNGVYDMAVVSRL--------AAESYLSQNNLCIALELGPHTYVGEHQLICRKG-ESGNVKRVG 116 (231)
T ss_dssp EEEEECSCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHHSCEEEEEECCTTSSSCCEEEEEETT-CGGGCCEEE
T ss_pred EEEEEccChHHHHHHHHcCCCCEEEEecc--------cchhhhcccCeEEEEEcCCCccccCeEEEEeCC-CccccEEEE
Confidence 47889999999999999999999997422 11111112233333222211 2355666554 235679999
Q ss_pred echHHHHHHH--HHHHhcCCeEEEe-cCHHHHHHHhhhcCCCCeEEec
Q 048784 95 SHPQALAQCE--NTLTKLGLVREAV-DDTAGAAKYVSFEQLKDAGAVA 139 (282)
Q Consensus 95 SHpqal~QC~--~fl~~~~~~~~~~-~sTa~Aa~~v~~~~~~~~AAI~ 139 (282)
-.+-...|+- +.+. .+..+..+ .+..++...+..+ .-+|+|-
T Consensus 117 vd~gS~dq~~lt~~~~-~g~~Ve~ve~~y~~~i~~L~~G--~IDA~Iw 161 (231)
T 2ozz_A 117 LDSRSADQKIMTDVFF-GDSDVERVDLSYHESLQRIVKG--DVDAVIW 161 (231)
T ss_dssp ECTTCHHHHHHHHHHH-TTSCCEEEECCHHHHHHHHHHT--SCCEEEE
T ss_pred ecCCChhHHHHHhhhc-CCCeEEEEECCHHHHHHHHHcC--CccEEEE
Confidence 9888888764 2222 24444556 7788888888876 3456666
No 76
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=66.22 E-value=26 Score=28.73 Aligned_cols=113 Identities=13% Similarity=0.162 Sum_probs=65.0
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCC-----CCCCCcc
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPG-----VKVEDLK 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~-----~~l~~I~ 91 (282)
+.++++. +..++++++.+|++|.++-++..+-+. ...+.. ..-+......++++++ .+++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSKTDER----------SKVFDF-STPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBCCHHH----------HTTEEE-CSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcCCHhH----------hhceec-ccchhhcceEEEEECCccccccCHHHhC
Confidence 4577888 999999999999999976432211110 001111 1112223344555443 1334442
Q ss_pred --EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 --RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 --~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....-.. ...++.+. +...+.+.|..++.+++..+ +-+|++.....+.
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 203 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSG--QVDAVIFEEPVAK 203 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcC--CCCEEEeChHHHH
Confidence 454433221 24556553 56677888999999998876 5677887766554
No 77
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=66.15 E-value=37 Score=28.27 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCC---CCCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVK---VEDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~---l~~I~-- 91 (282)
+.++++.+ +.++++++.+|++|+++-++.-+.+ ....+... .-+......|+++++.. ++|++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~~~----------r~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITITDE----------RKQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBCCHH----------HHTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcCCHH----------HHhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 45677775 9999999999999998743221100 00111111 11123344566655432 33332
Q ss_pred EEEechHHHHHHHHHHHhc---CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 RVLSHPQALAQCENTLTKL---GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~---~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....- ... ..+|.+. ....+.+.+..++.+++..+ +..|++.....+.
T Consensus 149 ~i~~~~g-~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~ 201 (272)
T 2pvu_A 149 TIGVQNA-TTG-QEAAEKLFGKGPHIKKFETTVVAIMELLNG--GVDAVITDNAVAN 201 (272)
T ss_dssp CEEEETT-SHH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTT--SCSEEEEEHHHHH
T ss_pred eEEEEcC-chH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcC--CccEEEeCHHHHH
Confidence 4443322 111 2345443 35567788888899988876 4567887766554
No 78
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=65.82 E-value=33 Score=28.06 Aligned_cols=113 Identities=9% Similarity=0.058 Sum_probs=65.0
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC----CCCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV----KVEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~----~l~~I~- 91 (282)
+.++++. ++.+++.++.+|++|.++-++.-+-+..- ......++ ......++.+++. +++|++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~~----~~~~s~p~-------~~~~~~~~~~~~~~~i~~~~dL~g 130 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIKEERRK----AIDFSDPY-------YDSGLAAMVQANNTTIKSIDDLNG 130 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECCHHHHT----TEEECSCC-------EEEEEEEEEETTCCSCCSSGGGTT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccCHHHHc----Ccceecce-------eeccEEEEEECCCCCcCChHHhCC
Confidence 4567776 67999999999999997654432211100 01111122 2233455555432 234442
Q ss_pred -EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 -RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 -~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|..-. .... ..||.+. ....+.+.|..++.+++..+ +-.|+|+....+.
T Consensus 131 ~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 183 (249)
T 4f3p_A 131 KVIAAKT-GTAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAG--RVDAAMHDTPNVL 183 (249)
T ss_dssp SEEEEET-TSHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred CEEEEeC-CChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcC--CeeEEEeCcHHHH
Confidence 443322 2222 3466654 56678888999999999876 5678888776654
No 79
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=65.75 E-value=39 Score=27.58 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEE--eeeeeeeecCC----CCCCCc
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKF--AVRHCLLANPG----VKVEDL 90 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l--~I~~~L~a~~~----~~l~~I 90 (282)
+.++++. ++.++++++.+|++|.++..+.. +-+ ....+.. .-+. .....++.+++ .+++|+
T Consensus 71 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------~~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL 137 (268)
T 3qax_A 71 QLEVREF-AFDALILNLKKHRIDAILAGMSI--------TPS--RQKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLT 137 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSSSEECSCCBC--------CHH--HHTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGG
T ss_pred eEEEEec-CHHHHHHHHhCCCccEEeecCcc--------CHh--Hhcceee--ecceecccceEEEEECCCCCCCCHHHh
Confidence 4567777 89999999999999987632221 111 1112222 3334 45566666654 234444
Q ss_pred c--EEEechHHHHHHHHHHHhc-CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHc
Q 048784 91 K--RVLSHPQALAQCENTLTKL-GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIY 147 (282)
Q Consensus 91 ~--~V~SHpqal~QC~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~y 147 (282)
+ +|....-. .. ..++.+. +...+.+.|..++.+++..+ +-+|++.....+..+
T Consensus 138 ~g~~i~~~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 138 QYSSVAVQTGT-YQ-EHYLLSQPGICVRSFDSTLEVIMEVRYG--KSPVAVLEPSVGRVV 193 (268)
T ss_dssp GSSCEEEETTS-HH-HHHHHTSTTCCEEEESCHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCCEEEEecCc-HH-HHHHHhCCCceEEecCCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 3 44443222 22 3455544 56677788999999988876 567888887766554
No 80
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=64.29 E-value=52 Score=26.08 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=66.2
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCC----CCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVK----VEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~----l~~I~- 91 (282)
+.++++. ++.++++++.+|++|. +.++-- +-+ ....+.. ..-+.....+++.+++.. ++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~--------~~~--r~~~~~~-s~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISW--------SEK--RARQIDF-TPPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEEC--------CHH--HHTTEEE-EEEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccC--------CHh--HHhhcCC-CccccccceEEEEECCCCCCCCHHHhCC
Confidence 4567765 7899999999999998 444321 111 1112222 233445666777766543 23332
Q ss_pred -EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 -RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 -~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....-. . -..+|.+. +...+.+.|..++.+++..+ +-.|+++....+.
T Consensus 118 ~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 170 (234)
T 3h7m_A 118 RKVALHRDG-I-MHEYLAERGYGKDLVLTPTPADALRLLAAG--GCDYAVVAMVPGM 170 (234)
T ss_dssp SCEEEETTS-H-HHHHHHTTTCGGGEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred CEEEEEeCc-h-HHHHHHhcCCCceEEEeCCHHHHHHHHHcC--CceEEEeccHHHH
Confidence 33332221 1 13566665 34677888999999998876 5677887766554
No 81
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=63.35 E-value=75 Score=27.88 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=64.0
Q ss_pred Cce--eecCC-HHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCcc
Q 048784 18 CEA--VPCEQ-FDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDLK 91 (282)
Q Consensus 18 ~~~--~~~~s-~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I~ 91 (282)
.++ +.+.+ -.++++++.+|++|+++......+. ..-...++.+++.....-...|+++++. +++|++
T Consensus 46 v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~~-------~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DLk 118 (348)
T 3uif_A 46 VEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPII-------LNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDLK 118 (348)
T ss_dssp EEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHHH-------HHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGGT
T ss_pred EEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHHH-------HHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHcC
Confidence 466 45654 6789999999999999854321111 1112235666655444445567776653 344543
Q ss_pred --EEEechH--HHHHHHHHHHhcCC-----eEEEecCHHHHHHHhhhcCCCCeEEecChhh
Q 048784 92 --RVLSHPQ--ALAQCENTLTKLGL-----VREAVDDTAGAAKYVSFEQLKDAGAVASSSA 143 (282)
Q Consensus 92 --~V~SHpq--al~QC~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~A 143 (282)
+|...+- .......+|.+.++ ..+.. +.+++...+..+ .-.|++.....
T Consensus 119 Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G--~vDa~~~~~~~ 176 (348)
T 3uif_A 119 GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASG--TVDGFFSLFDS 176 (348)
T ss_dssp TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHT--SSSEEEESTTH
T ss_pred CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcC--CCCEEEechHH
Confidence 6655322 22334677777654 33322 556666666665 34455554433
No 82
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=63.21 E-value=79 Score=27.77 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=86.5
Q ss_pred CCCcHHHHHHHhhC------CCCceeecCC-----HHHHHHHHHcCCCCeEEEeeee---------cc------------
Q 048784 2 VRGAYSESAAEKAY------PNCEAVPCEQ-----FDTAFEAVERWLVDRAVLPIEN---------SL------------ 49 (282)
Q Consensus 2 P~GTfS~~Aa~~~~------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiEN---------S~------------ 49 (282)
|+|+..++++..+- +..++..+.+ -.+++++|..|.+|.+++..-+ ..
T Consensus 10 ~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~ 89 (316)
T 2vpn_A 10 YEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPYLMPTDMDT 89 (316)
T ss_dssp CTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTTCSCSSHHH
T ss_pred CCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCeecCCHHHH
Confidence 67777777776542 3455555554 3899999999999999876211 00
Q ss_pred -----cc--ceecc-ccccccCCeEEEEEEEEeeeeeeeecCCCCCCCcc--EEEechHHHHHHHHHHHhcCCeEEEecC
Q 048784 50 -----GG--SIHRN-YDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLK--RVLSHPQALAQCENTLTKLGLVREAVDD 119 (282)
Q Consensus 50 -----~G--~V~~t-~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I~--~V~SHpqal~QC~~fl~~~~~~~~~~~s 119 (282)
.| .+.+. .+.+.+.++++.+-.....++....++=.+++|++ +|..-+-.. -.++++..++..++..
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~~~~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~lGa~pv~m~- 166 (316)
T 2vpn_A 90 VLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVTADEPITSPEDFDNKKIRTMTNPL--LAETYKAFGATPTPLP- 166 (316)
T ss_dssp HHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEEESSCCCSGGGGTTCEEEECSCHH--HHHHHHHHTCEEEECC-
T ss_pred HHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceEEecCCCCCChHHhCCCEEEeCCCHH--HHHHHHHcCCeeeecC-
Confidence 01 11111 11223457777765554444433223334566766 666543232 2477888888766553
Q ss_pred HHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccCCCCc-eEEEEEee
Q 048784 120 TAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNV-TRFLMLAR 171 (282)
Q Consensus 120 Ta~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~~N~-TRF~vl~~ 171 (282)
.++.-..+..+ .-+|+..+.....-.++.-..+.+-+..+.. +-++++++
T Consensus 167 ~~Evy~ALq~G--~VDg~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 167 WGEVYGGLQTG--IIDGQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp GGGHHHHHHHT--SCSEEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred HHHHHHHHHcC--CcceeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 23334434443 3456666655554445533334443333333 33444444
No 83
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=61.46 E-value=8 Score=31.76 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=39.7
Q ss_pred EEEEEE-EcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHH
Q 048784 183 KTSIVF-SLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHL 261 (282)
Q Consensus 183 ktsi~~-~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l 261 (282)
+.+++= ..++.||.+.++++.|++.|||+..|-+.. . .-.|.|+- ....+|++.|
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe--~----------------~Is~vV~~------~d~~~Av~~L 152 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSE--I----------------RISVLIRE------DDLDAAARAL 152 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEET--T----------------EEEEEEEG------GGHHHHHHHH
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCC--C----------------eEEEEEeH------HHHHHHHHHH
Confidence 444443 346889999999999999999999885321 1 45677744 3345667766
Q ss_pred Hhh
Q 048784 262 KEF 264 (282)
Q Consensus 262 ~~~ 264 (282)
.+.
T Consensus 153 h~~ 155 (178)
T 2dtj_A 153 HEQ 155 (178)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 84
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=59.93 E-value=52 Score=25.96 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=23.7
Q ss_pred CCCCceee-cCCHHHHHHHHHcCCCCeEEEee
Q 048784 15 YPNCEAVP-CEQFDTAFEAVERWLVDRAVLPI 45 (282)
Q Consensus 15 ~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPi 45 (282)
+|+.++.. ..+-.++.+++.+|++|+|++.-
T Consensus 37 ~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~ 68 (232)
T 3ho7_A 37 LAGLEIHVSEMQTSRCLASLLSGEIDMAIIAS 68 (232)
T ss_dssp STTEEEEEEECCHHHHHHHHHHTSCSEEEESS
T ss_pred CCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcC
Confidence 56655433 35678999999999999999863
No 85
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=59.92 E-value=51 Score=28.35 Aligned_cols=113 Identities=18% Similarity=0.023 Sum_probs=66.0
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceecccccc-ccCCeEEEEEEEEeeeeeeeecCCC-----CCCCcc
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLL-LRHRLHIVGEVKFAVRHCLLANPGV-----KVEDLK 91 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L-~~~~l~I~~E~~l~I~~~L~a~~~~-----~l~~I~ 91 (282)
.++++..+..+++++|.+|++|+++.+....+ ... ...++.+++.....-...++++++. +++|++
T Consensus 66 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL~ 137 (346)
T 3qsl_A 66 VSIADFAGGSKALQAVVGGSADVVSGAFEHTL--------SLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADLK 137 (346)
T ss_dssp EEEEECSSHHHHHHHHHTTSCSEEEEETHHHH--------HHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGGT
T ss_pred EEEEecCChHHHHHHHHCCCCCEEccchHHHH--------HHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHcC
Confidence 57788899999999999999999987654321 111 1224444443332223455555532 345553
Q ss_pred --EEEec-hH--HHHHHHHHHHhcCC-----eEEEecCHHHHHHHhhhcCCCCeEEecC
Q 048784 92 --RVLSH-PQ--ALAQCENTLTKLGL-----VREAVDDTAGAAKYVSFEQLKDAGAVAS 140 (282)
Q Consensus 92 --~V~SH-pq--al~QC~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~~~~~AAI~s 140 (282)
+|... +- .....+.+|++.++ +.+...+.+++...+..+ .-+|++..
T Consensus 138 Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G--~vDa~~~~ 194 (346)
T 3qsl_A 138 GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSG--QIDAISNT 194 (346)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHT--SCSEEEEE
T ss_pred CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcC--CccEEEec
Confidence 66554 32 23344677777654 345666666777777765 33455543
No 86
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=59.38 E-value=25 Score=28.07 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=63.2
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEee-eeeeeecCCC--CCCCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAV-RHCLLANPGV--KVEDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I-~~~L~a~~~~--~l~~I~-- 91 (282)
+.++++. ++.+++.++.+|++|.++-++.- +-+. ...+... .-+... ...++++++. +++|++
T Consensus 46 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------~~~r--~~~~~~s-~p~~~~~~~~~~~~~~~~~~~~dL~g~ 113 (229)
T 2y7i_A 46 ECSFTNQ-SFDSLIPSLRFKKFDAVIAGMDM--------TPKR--EQQVSFS-QPYYEGLSAVVVTRKGAYHTFADLKGK 113 (229)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTSEEC-SCSBCCCCEEEEEETTSCCSTGGGTTC
T ss_pred eEEEEEc-CHHHHHHHHhCCCceEEEecCcc--------CHHH--hcceeec-cccccCCcEEEEEeCCCCCCHHHHCCC
Confidence 3466775 78999999999999988632211 1100 0011000 001122 3445555442 234432
Q ss_pred EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHH
Q 048784 92 RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAI 146 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ 146 (282)
+|.... .... ..+|.+. +...+.+.|..++.+++..+ +-.|+++....+..
T Consensus 114 ~v~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 166 (229)
T 2y7i_A 114 KVGLEN-GTTH-QRYLQDKQQAITPVAYDSYLNAFTDLKNN--RLEGVFGDVAAIGK 166 (229)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESCHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred EEEEec-CCcH-HHHHHHhCCCCeEEecCCHHHHHHHHHcC--CcCEEEechHHHHH
Confidence 444322 2222 3466654 56777888888899998876 56788887766643
No 87
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=58.83 E-value=91 Score=27.08 Aligned_cols=141 Identities=15% Similarity=0.078 Sum_probs=76.2
Q ss_pred CCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHcCCCCeEEEeeeeccccceec-------------
Q 048784 2 VRGAYSESAAEKAY--------PNCEAVPCEQ-----FDTAFEAVERWLVDRAVLPIENSLGGSIHR------------- 55 (282)
Q Consensus 2 P~GTfS~~Aa~~~~--------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiENS~~G~V~~------------- 55 (282)
|+|+..+.++..+. +..++..+++ -.+++++|..|.+|.+++..-+ ..|.+..
T Consensus 11 ~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~-~~~~~p~~~~~~lPfl~~~~ 89 (301)
T 2pfy_A 11 PDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSA-LGNEDPLFEIDSVPFLASSF 89 (301)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGG-GTTTCGGGGGGGSTTTSCSH
T ss_pred CCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhh-hhccCcccccccCCcccCCH
Confidence 66777677766542 2344544443 3799999999999999886321 1111110
Q ss_pred ------------cc-cccccCCeEEEEEEEEeeeeeeeec-CCCCCCCcc--EEEechHHHHHHHHHHHhcCCeEEEecC
Q 048784 56 ------------NY-DLLLRHRLHIVGEVKFAVRHCLLAN-PGVKVEDLK--RVLSHPQALAQCENTLTKLGLVREAVDD 119 (282)
Q Consensus 56 ------------t~-d~L~~~~l~I~~E~~l~I~~~L~a~-~~~~l~~I~--~V~SHpqal~QC~~fl~~~~~~~~~~~s 119 (282)
.+ +.+.+.++++.+-...+-.+ +..+ +=.+++|++ +|..- ... -.++++..++..++. +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lGa~pv~~-~ 164 (301)
T 2pfy_A 90 NESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMGAVPTTV-Q 164 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTTSEEEEC-C
T ss_pred HHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcCCcceec-c
Confidence 01 12233567776644333333 4443 223556665 55552 222 256888888877655 3
Q ss_pred HHHHHHHhhhcCCCCeEEecChhhHHHcCCc
Q 048784 120 TAGAAKYVSFEQLKDAGAVASSSAAAIYGLN 150 (282)
Q Consensus 120 Ta~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~ 150 (282)
.++.-..+..+ .-+|+..+.......++.
T Consensus 165 ~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ 193 (301)
T 2pfy_A 165 TPEVPQAFSTG--VIDAMLTSPATGVDSQAW 193 (301)
T ss_dssp GGGHHHHHHTT--SCSBEEECHHHHHHTTGG
T ss_pred HHHHHHHHhcc--eeeeEecCccccccccHH
Confidence 33444444443 345667776655455553
No 88
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=58.70 E-value=10 Score=30.65 Aligned_cols=58 Identities=28% Similarity=0.242 Sum_probs=40.3
Q ss_pred EEEEEE-EcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHH
Q 048784 183 KTSIVF-SLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHL 261 (282)
Q Consensus 183 ktsi~~-~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l 261 (282)
|.|++= ..++.||.+.++++.+++.|||+..|-+. .. .-.|.|+-+ ...+|++.|
T Consensus 97 ~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S--e~----------------~is~vv~~~------d~~~Av~~L 152 (167)
T 2dt9_A 97 KVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATS--EV----------------RISVIIPAE------YAEAALRAV 152 (167)
T ss_dssp EEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEEC--SS----------------EEEEEEEGG------GHHHHHHHH
T ss_pred EEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEcc--CC----------------EEEEEEeHH------HHHHHHHHH
Confidence 555554 35678999999999999999999777422 11 457777653 345677776
Q ss_pred Hhh
Q 048784 262 KEF 264 (282)
Q Consensus 262 ~~~ 264 (282)
.+.
T Consensus 153 h~~ 155 (167)
T 2dt9_A 153 HQA 155 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 89
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=57.97 E-value=26 Score=28.55 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=64.2
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCC-----CCCCCcc
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPG-----VKVEDLK 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~-----~~l~~I~ 91 (282)
+.++++. ++..++.++.+|++|.++-++-.+-+.. . ......++ +.....++++++ .+++|++
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~--~~~~s~p~-------~~~~~~~~~~~~~~~~i~~~~dL~ 112 (245)
T 3k4u_A 45 KLKLVPT-SWDGLIPGLVTEKFDIIISGMTISQERN--L--RVNFVEPY-------IVVGQSLLVKKGLEKGVKSYKDLD 112 (245)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHHHH--T--TSEECSCS-------EEECEEEEEETTTTTTCCSGGGGC
T ss_pred eEEEEEc-cHHHHHHHHhCCCcCEEEecCcCCHHHH--h--hcCcchhh-------heeceEEEEECCcccccCCHHHhc
Confidence 3466775 6999999999999998653332111100 0 01111121 223345555554 2345554
Q ss_pred ----EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 ----RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 ----~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|.... .... ..+|.+. +...+.+.|..++.+++..+ +-.|+|+....+.
T Consensus 113 ~~g~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 168 (245)
T 3k4u_A 113 KPELTLVTKF-GVSA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNG--KADMFIFDLPFNV 168 (245)
T ss_dssp CSSCEEEEET-TSHH-HHHHHHHCSSSEEEEESSHHHHHHHHHSS--SSEEEEEEHHHHH
T ss_pred cCCcEEEEeC-CcHH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcC--CCcEEEEcHHHHH
Confidence 343332 2222 3455553 56778888999999998876 5778888875554
No 90
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=57.92 E-value=16 Score=30.82 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHH--HHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEE-EEEEEeeeee
Q 048784 2 VRGAYSESAAEKAYPNCEAVPCEQFDTA--FEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIV-GEVKFAVRHC 78 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~~~~~~~~~s~~~v--~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~-~E~~l~I~~~ 78 (282)
+.|+..+...+++ +. +++.+.+..++ +++|.+|++| +++.-. .....+.. .....++.+. +...-+...+
T Consensus 138 ~~g~~~~~~l~~~-~~-~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 210 (271)
T 2iee_A 138 AATTVYMEVARKY-GA-KEVIYDNATNEQYLKDVANGRTD-VILNDY-YLQTLALA---AFPDLNITIHPDIKYMPNKQA 210 (271)
T ss_dssp CTTSHHHHHHHHT-TC-EEEECSSCCHHHHHHHHHHTSSC-EEEEEH-HHHHHHHH---HCTTSSCEECSSCCEEEEEEC
T ss_pred eCCccHHHHHHHc-CC-ceEEeCChhhHHHHHHHHcCCcc-EEeccH-HHHHHHHH---hCCCCceEEecCCCcccceEE
Confidence 4677777666553 33 78899999999 9999999999 776422 11111110 0111234443 3333344455
Q ss_pred eeecCCCCCCCccEEEechHHHHHHHHHHHh
Q 048784 79 LLANPGVKVEDLKRVLSHPQALAQCENTLTK 109 (282)
Q Consensus 79 L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~ 109 (282)
++.+++ +|+-..+-.+.|.+
T Consensus 211 ~~~~k~-----------~~~l~~~ln~al~~ 230 (271)
T 2iee_A 211 LVMKKS-----------NAALQKKMNEALKE 230 (271)
T ss_dssp CEEETT-----------CHHHHHHHHHHHHH
T ss_pred EEEcCC-----------CHHHHHHHHHHHHH
Confidence 655543 46666666666655
No 91
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=56.97 E-value=62 Score=30.07 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=57.9
Q ss_pred HHcCCceeecccccCCCCceEEEEEeeC--CCCC---C-CCCCcEEEEEEE-cCCCccHHHHHHHHHHHCCceeeeeeee
Q 048784 145 AIYGLNILAEDIQDDCDNVTRFLMLARE--PIIP---G-TDRPFKTSIVFS-LEEGPGVLFKALAVFALRQINLTKIESR 217 (282)
Q Consensus 145 ~~ygL~vl~~~I~d~~~N~TRF~vl~~~--~~~~---~-~~~~~ktsi~~~-~~~~pG~L~~~L~~F~~~~INlt~IeSR 217 (282)
..+|.++.-.+-.+. +-=|.|.--... ...+ + ...++-+.|.+. .+++||.+.++++.|+++|||+-.|-.
T Consensus 221 ~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q- 298 (421)
T 3ab4_A 221 RAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ- 298 (421)
T ss_dssp HHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE-
T ss_pred HHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc-
Confidence 457888776665543 445665311000 0110 0 011223444444 688999999999999999999998843
Q ss_pred eCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHhh
Q 048784 218 PLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEF 264 (282)
Q Consensus 218 P~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~ 264 (282)
++.... . ......|.|+-+ +.++..++|+++++.
T Consensus 299 ~~s~~~---------~-g~~~isf~v~~~---~~~~a~~~l~~~~~~ 332 (421)
T 3ab4_A 299 NVFSVE---------D-GTTDITFTCPRS---DGRRAMEILKKLQVQ 332 (421)
T ss_dssp CCCC-----------C-CEEEEEEEEETT---THHHHHHHHHHHHTT
T ss_pred cCcccc---------C-CcceEEEEEech---hHHHHHHHHHHHHHH
Confidence 211000 0 012467888752 224456777776543
No 92
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=56.01 E-value=72 Score=27.54 Aligned_cols=106 Identities=19% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEE-eeeeeeeecCCC---CCCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKF-AVRHCLLANPGV---KVEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l-~I~~~L~a~~~~---~l~~I~- 91 (282)
+.+++++.+..+++++|.+|++|++++..... ........++.+++-... +-...|+++++. +++|++
T Consensus 59 ~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~-------~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I~s~~DLkG 131 (324)
T 3ksx_A 59 KITWVEFPAGPQLLEALNVGSIDLGGAGDIPP-------LFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTVADLKG 131 (324)
T ss_dssp EEEEEEESSHHHHHHHHHTTSCSEEEEESHHH-------HHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTT
T ss_pred ceEEEECCCHHHHHHHHHCCCCCEEeecCHHH-------HHHHhcCCCEEEEEEecCCCCceEEEEeCCCCCCCHHHhCC
Confidence 35788889999999999999999998643211 111112345666664321 223567776653 344553
Q ss_pred -EEEechHH--HHHHHHHHHhcCC-----eEEEecCHHHHHHHhhhc
Q 048784 92 -RVLSHPQA--LAQCENTLTKLGL-----VREAVDDTAGAAKYVSFE 130 (282)
Q Consensus 92 -~V~SHpqa--l~QC~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~ 130 (282)
+|..-+-. ......+|.+.++ +.+.. +.+++...+..+
T Consensus 132 k~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G 177 (324)
T 3ksx_A 132 KRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAG 177 (324)
T ss_dssp CEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTT
T ss_pred CEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcC
Confidence 66554322 2234567777654 33333 566666666655
No 93
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=55.51 E-value=86 Score=27.39 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=63.2
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCc---c
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDL---K 91 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I---~ 91 (282)
++++++.+..++++++.+|++|+++......+.. .-...++.+++-.. +-...++++++. +++|+ +
T Consensus 84 Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-------~~~g~~~~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk 155 (341)
T 3un6_A 84 LELVKFNNWPDLMDALNSGRIDGASTLIELAMKS-------KQKGSNIKAVALGH-HEGNVIMGQKGMHLNEFNNNGDDY 155 (341)
T ss_dssp EEEEECSSHHHHHHHHHTTSSSEEEEEHHHHHHH-------HHTTCCCEEEEESC-EECEEEEESTTCCGGGCCSSSSCE
T ss_pred EEEEEcCCHHHHHHHHHcCCCCEEecchHHHHHH-------HHCCCCeEEEeecC-CCceEEEEcCCCCCCCHHHhCCCC
Confidence 5788999999999999999999998764322111 11123455554322 234567777643 34566 4
Q ss_pred EEEechH---HHHHHHHHHHhcCC-----eEEEecCHHHHHHHhhhcCCCCeEEecC
Q 048784 92 RVLSHPQ---ALAQCENTLTKLGL-----VREAVDDTAGAAKYVSFEQLKDAGAVAS 140 (282)
Q Consensus 92 ~V~SHpq---al~QC~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~~~~~AAI~s 140 (282)
+|..... .....+.+|++.++ +.+.. +.+++...+..+ .-+|++..
T Consensus 156 ~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G--~vDa~~~~ 209 (341)
T 3un6_A 156 HFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEH--RITGYSVA 209 (341)
T ss_dssp EEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTT--SCSEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcC--CCCEEEec
Confidence 6654331 11223557777654 23333 445566666554 33455543
No 94
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=54.56 E-value=9 Score=31.20 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=64.0
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCC-----CCCCCcc
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPG-----VKVEDLK 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~-----~~l~~I~ 91 (282)
+.++++. ++.++++++.+|++|.++.++.-+-+.. . ......++ +.....++.+++ .+++|++
T Consensus 55 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~--~~~fs~p~-------~~~~~~~~~~~~~~~~i~~~~dL~ 122 (239)
T 3kbr_A 55 KLVVVPT-SWPNLMRDFADDRFDIAMSGISINLERQ--R--QAYFSIPY-------LRDGKTPITLCSEEARFQTLEQID 122 (239)
T ss_dssp EEEEEEC-CTTTHHHHHHTTCCSEECSSCBCCHHHH--T--TCEECSCS-------EEECEEEEEEGGGGGGGSSHHHHS
T ss_pred ceEEEEe-CHHHHHHHHHCCCcCEEEeCCcCCHHHc--C--ccccchHH-------hccCcEEEEECCcccccCCHHHhc
Confidence 3567777 8999999999999998864432211100 0 00011121 222334444432 1334443
Q ss_pred ----EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHH
Q 048784 92 ----RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAI 146 (282)
Q Consensus 92 ----~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ 146 (282)
+|....-.. -..++.+. +...+.+.|..++.+++..+ +-.|+|.....+..
T Consensus 123 ~~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 179 (239)
T 3kbr_A 123 QPGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDG--KADLMMTDAIEARL 179 (239)
T ss_dssp STTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CCCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcC--CcCEEEEchHHHHH
Confidence 554332221 13455553 56677788888888988876 56788887776653
No 95
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=54.45 E-value=81 Score=25.91 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=62.3
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCC-----CCCCCcc
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPG-----VKVEDLK 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~-----~~l~~I~ 91 (282)
+.++++. ++.++++++.+|++|.++-++-.+-+.. .. .....++ ......++.+++ .+++|++
T Consensus 69 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~~--~~fs~p~-------~~~~~~~~~~~~~~~~i~~~~dL~ 136 (259)
T 4dz1_A 69 KLNITEY-AWDGMLGAVASGQADVAFSGISITDKRK--KV--IDFSEPY-------YINSFYLVSMANHKITLNNLNELN 136 (259)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSSSEEEEEEECCHHHH--TT--EEECCCS-------EEEEEEEEEETTSCCCCCSGGGGG
T ss_pred eEEEEEc-CHHHHHHHHhCCCCCEEEECCcCCHHHh--hc--cccccch-------hhCceEEEEEcCCCCCCCCHHHhC
Confidence 4577887 8999999999999999775443221111 00 0011122 122233444322 1334442
Q ss_pred --EEEechH--HHHHHHHHHHhcC----CeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 --RVLSHPQ--ALAQCENTLTKLG----LVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 --~V~SHpq--al~QC~~fl~~~~----~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....- ....-++++...+ ...+.+.|..++.+++..+ +-+|++.....+.
T Consensus 137 g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~ 196 (259)
T 4dz1_A 137 KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNG--NLDLAFIEEPVYF 196 (259)
T ss_dssp GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHT--SCSEEEEEHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 4433221 1112223333322 4567788889999999887 5677887776653
No 96
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=53.80 E-value=6.8 Score=32.82 Aligned_cols=114 Identities=8% Similarity=0.000 Sum_probs=60.3
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I~-- 91 (282)
+.+++++ ++.++++++.+|++|.++-++. .|-+. ...+... .-+.....+++++++. +++|++
T Consensus 61 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~t~~r--~~~~~fs-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 128 (268)
T 3hv1_A 61 DVEWQAI-DWDMKETELKNGTIDLIWNGYS--------VTDER--KQSADFT-EPYMVNEQVLVTKKSSGIDSVAGMAGK 128 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSCSEECSSCB--------CCHHH--HTTCEEC-CCCEEECEEEEEEGGGCCCSSGGGTTC
T ss_pred cEEEEEC-CHHHHHHHHHCCCCCEEEecCc--------cCHHH--HhcCcCc-HHHeeCceEEEEECCCCCCCHHHhCCC
Confidence 3467777 4999999999999998762221 11110 0011111 1122233455554432 233332
Q ss_pred EEEechHHHHHHHHHHHhc---------CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHH
Q 048784 92 RVLSHPQALAQCENTLTKL---------GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAI 146 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~---------~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ 146 (282)
+|..-. .... ..+|.+. +...+.+.|..++.+++..+ +-.|+|+....+..
T Consensus 129 ~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 188 (268)
T 3hv1_A 129 TLGAQA-GSSG-YDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSG--RIDGLLIDRVYANY 188 (268)
T ss_dssp CEEEET-TCHH-HHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred EEEEEe-CCch-HHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcC--CCCEEEeCHHHHHH
Confidence 332211 1111 1223222 14677788999999999887 56788877766543
No 97
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=53.11 E-value=96 Score=25.64 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=59.2
Q ss_pred CCCCceee-cCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCCCCc---
Q 048784 15 YPNCEAVP-CEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDL--- 90 (282)
Q Consensus 15 ~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I--- 90 (282)
+|+.++.. ..+-.++.+.+.+|++|+|++.......+... ..|.+.++. +.++-.|-|......+++++
T Consensus 117 ~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~----~v~~~~~pl~~~~~~~~~dL~~~ 189 (294)
T 1ixc_A 117 TPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEI---VNIAQEDLY----LAVHRSQSGKFGKTCKLADLRAV 189 (294)
T ss_dssp CTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCTTEEE---EEEEEEEEE----EEEEGGGGGGTCSEECGGGGTTC
T ss_pred CCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCCCCceE---EEEeeccEE----EEEeCCCccccCCccCHHHHcCC
Confidence 57655433 33467899999999999999864321111110 011111111 12233343332222233333
Q ss_pred cEEEec----hHHHHHHHHHHHhcCCe---EEEecCHHHHHHHhhhcCCCCeEEecChhhH
Q 048784 91 KRVLSH----PQALAQCENTLTKLGLV---REAVDDTAGAAKYVSFEQLKDAGAVASSSAA 144 (282)
Q Consensus 91 ~~V~SH----pqal~QC~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa 144 (282)
.-|... +..-....+|+.+++.. ...+.|...+..+++.+ .+ .|+.+...+
T Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g--~G-ia~lp~~~~ 247 (294)
T 1ixc_A 190 ELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAG--AA-SSIVPASVA 247 (294)
T ss_dssp EEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTT--SC-BEEEEHHHH
T ss_pred CEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcC--Ce-EEEechhhh
Confidence 344333 12234556677766542 23456666667777765 33 466666543
No 98
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=53.10 E-value=1.1e+02 Score=26.43 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=73.3
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCC---CCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKV---EDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l---~~I~-- 91 (282)
++++.+.. -..+++|+.+|++|+.+--.-+.+... .++.. +.++...+...-.-...|+.++...+ +|++
T Consensus 45 ~Ve~~~~~-~~~~~~AL~~G~iD~~~e~w~~~~~~~---~~~~~-~~~l~~l~~~~~~~~~~l~V~~~~~i~sisDL~~~ 119 (280)
T 3tmg_A 45 NAEIFSVT-TSIMYQYLASGKIDGTVSSWVPTADKF---YYEKL-KTKFVDLGANYEGTIQGFVVPSYVPISSISELKGK 119 (280)
T ss_dssp EEEEEECC-HHHHHHHHHTTSSSEEEEEEETTTTHH---HHHHH-GGGEEEEEEEEEEEEEEEEEETTSCCCBGGGGTTC
T ss_pred ceEEEECC-cHHHHHHHHCCCCcEEEeccCCcccHH---HHHHh-cCcEEEccccCCCceEEEEECCCCCCCCHHHHHhh
Confidence 35677764 478999999999999765333332211 22222 23677777766555678888775444 3443
Q ss_pred ------EEEechHHHH---HHHHHHHhcCC-e-EEEecCHHHH-----HHHhhhcCCCCeEEecChhhHHHcCCceeec
Q 048784 92 ------RVLSHPQALA---QCENTLTKLGL-V-REAVDDTAGA-----AKYVSFEQLKDAGAVASSSAAAIYGLNILAE 154 (282)
Q Consensus 92 ------~V~SHpqal~---QC~~fl~~~~~-~-~~~~~sTa~A-----a~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~ 154 (282)
+++.-|..+. .....++.++. . ...+.++..+ .+.+.+++.--..+=.+...-..|+|.+|+.
T Consensus 120 ~~~f~~~~~g~~~G~~~~~~~~~~l~~yGL~~~~~~v~~s~~~m~~~l~~A~~~g~~~v~~~w~p~~~~~~~~l~~LeD 198 (280)
T 3tmg_A 120 GDKFKNKMIGIDAGAGTQIVTEQALNYYGLSKEYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDD 198 (280)
T ss_dssp GGGGTTEEECCSTTCHHHHHHHHHHHHTTCTTTSEEECCCHHHHHHHHHHHHHTTCCCCEEEEESCTHHHHSCEEECBC
T ss_pred HHHcCCeEEecCCCchhHHHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHHCCCCEEEEEecCchhhhcCCeEEecC
Confidence 3455454432 22345555555 2 3334333221 2223333222233346666677899999974
No 99
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=51.63 E-value=1e+02 Score=25.89 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=60.0
Q ss_pred hCCCCceeec-CCHHHHHHHHHcCCCCeEEEeeeec--cccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCCCCc
Q 048784 14 AYPNCEAVPC-EQFDTAFEAVERWLVDRAVLPIENS--LGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDL 90 (282)
Q Consensus 14 ~~~~~~~~~~-~s~~~v~~av~~g~~d~gVvPiENS--~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I 90 (282)
.+|+.++... .+-+++.+.+.+|++|+|+...... -.+... ..|.+..+.++ .+-.|-|... .+++++
T Consensus 117 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~~l~~---~~L~~~~~~~v----~~~~hpla~~--~~~~dL 187 (305)
T 3fxq_A 117 EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEA---QPLYVSDVVIV----GQRQHPMANA--TRLAEL 187 (305)
T ss_dssp HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEEE---EEEEECCEEEE----EETTCTTTTC--CSGGGG
T ss_pred HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCCccCeeE---EEeecCcEEEE----EcCCCCCCCC--CCHHHH
Confidence 3577655433 3456788899999999999864311 111111 11222222221 1223322211 123333
Q ss_pred ---cEEE-echHH-HHHHHHHHHhcCC-e---EEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 91 ---KRVL-SHPQA-LAQCENTLTKLGL-V---REAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 91 ---~~V~-SHpqa-l~QC~~fl~~~~~-~---~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
.-|. +.... -....+|+.+.+. . ...++|...+..+++.+ ...|+.+...++
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g---~gia~lp~~~~~ 248 (305)
T 3fxq_A 188 QECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS---DLLTTMPRTLYE 248 (305)
T ss_dssp TTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS---SCEEEEEHHHHH
T ss_pred hCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC---CEEEEeeHHHHh
Confidence 3343 22221 2456777877655 2 24456666667777764 235666766654
No 100
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=50.54 E-value=53 Score=27.85 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=64.3
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I~-- 91 (282)
+.++++.+ +.++++++.+|++|+++.++.-+ .+. ...+... .-+......++++++. +++|++
T Consensus 98 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~--------~~r--~~~~~~~-~p~~~~~~~l~~~~~~~i~sl~dL~gk 165 (291)
T 2yjp_A 98 KVEFVLTE-AANRVEYVRSGKVDLILANFTQT--------PER--AEAVDFA-DPYMKVALGVVSPKNKPITDMAQLKDQ 165 (291)
T ss_dssp GEEEEECC-GGGHHHHHHTTSCSEECSSCBCC--------HHH--HTTEEEC-CCCEEECEEEEEETTSCCCSGGGGTTS
T ss_pred eEEEEEcc-HHHHHHHHhCCCeeEEEeCCCCC--------hHH--Hccceec-cCeeecceEEEEeCCCCCCCHHHhCCC
Confidence 34667776 68999999999999887433211 110 0111111 1122334566666653 334442
Q ss_pred EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|.. +..... ..+|.+. +...+.+.+..++.+++..+ +-+|++.....+.
T Consensus 166 ~v~~-~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~ 217 (291)
T 2yjp_A 166 TLLV-NKGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDG--RGVALAHDNALLW 217 (291)
T ss_dssp EEEE-ETTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EEEE-ecCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcC--CccEEEecHHHHH
Confidence 4544 222222 2345543 46677788888899988876 5677887766554
No 101
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=48.84 E-value=99 Score=24.54 Aligned_cols=122 Identities=17% Similarity=0.074 Sum_probs=60.2
Q ss_pred hCCCCceee-cCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCCCCcc-
Q 048784 14 AYPNCEAVP-CEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLK- 91 (282)
Q Consensus 14 ~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I~- 91 (282)
.+|+.++.. ..+-.++.+.+.+|++|+|++.-.....+... ..|.+.++. +.++-+|-|..+...+++++.
T Consensus 55 ~~P~v~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~----~v~~~~hpl~~~~~i~~~dl~~ 127 (238)
T 2hxr_A 55 RYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEA---IPLLTESLA----LVVAQHHPLAVHEQVALSRLHD 127 (238)
T ss_dssp HCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCCCTTEEE---EEEEEEEEE----EEEETTSGGGGCSEECGGGGGG
T ss_pred hCCCcEEEEEECCHHHHHHHHHcCCCcEEEEcCCCCccccee---eeeccCcEE----EEEcCCCcccccCCCCHHHHhc
Confidence 357766543 34578899999999999999853211111000 011111111 122333434332223344443
Q ss_pred --EEE-echHH-HHHHHHHHHhcCCe---EEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 --RVL-SHPQA-LAQCENTLTKLGLV---REAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 --~V~-SHpqa-l~QC~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
-|. +.... ......|+.+.+.. ...+.|...+..+|+.+ .+ .|+.+...++
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g--~G-i~~lp~~~~~ 185 (238)
T 2hxr_A 128 EKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRT--SL-STLLPAAIAT 185 (238)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHHHHS--SC-BEEEETHHHH
T ss_pred CCeEEecCCccHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC--Cc-EEEecHHHhc
Confidence 332 22222 23355666665442 24456666677777765 34 4565555544
No 102
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=47.91 E-value=73 Score=23.22 Aligned_cols=110 Identities=10% Similarity=0.026 Sum_probs=62.8
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeeccccc-CCCCceEEEEEe
Q 048784 92 RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQD-DCDNVTRFLMLA 170 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d-~~~N~TRF~vl~ 170 (282)
-|=.++......+.+|.+.++.+..+.|..+|.+.+.+. .....|.........|+.++.. |.. .....+.+++++
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~-l~~~~~~~~~pii~~s 88 (142)
T 3cg4_A 12 IVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMDGWDTIRA-ILDNSLEQGIAIVMLT 88 (142)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSCHHHHHHH-HHHTTCCTTEEEEEEE
T ss_pred EEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHH-HHhhcccCCCCEEEEE
Confidence 344577778888889988888777777777787777654 3455554433233344444443 332 234568999998
Q ss_pred eCCCCCCCC--CCcEEEEEEEcCCCccHHHHHHHHH
Q 048784 171 REPIIPGTD--RPFKTSIVFSLEEGPGVLFKALAVF 204 (282)
Q Consensus 171 ~~~~~~~~~--~~~ktsi~~~~~~~pG~L~~~L~~F 204 (282)
......... ...-..-++.-+-.+..|...|...
T Consensus 89 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 89 AKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp CTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 764321111 0112333344455566676666544
No 103
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=47.71 E-value=21 Score=31.77 Aligned_cols=45 Identities=18% Similarity=0.029 Sum_probs=35.7
Q ss_pred CCCCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHcCCCCeEEEee
Q 048784 1 GVRGAYSESAAEKAYP-------NCEAVPCEQFDTAFEAVERWLVDRAVLPI 45 (282)
Q Consensus 1 GP~GTfS~~Aa~~~~~-------~~~~~~~~s~~~v~~av~~g~~d~gVvPi 45 (282)
|+.||-+|.++..++. +...+++.+..+++.++.+|++|..+...
T Consensus 152 ~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 152 GSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp CSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 5678888888776542 12458999999999999999999998743
No 104
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=46.16 E-value=47 Score=32.04 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=59.5
Q ss_pred HHcCCceeecccccCCCCceEEEEEeeCC-CCCC----CCCCcEEEEEEE---cCCCccHHHHHHHHHHHCCceeeeeee
Q 048784 145 AIYGLNILAEDIQDDCDNVTRFLMLAREP-IIPG----TDRPFKTSIVFS---LEEGPGVLFKALAVFALRQINLTKIES 216 (282)
Q Consensus 145 ~~ygL~vl~~~I~d~~~N~TRF~vl~~~~-~~~~----~~~~~ktsi~~~---~~~~pG~L~~~L~~F~~~~INlt~IeS 216 (282)
..+|.++...+-.+...-=|.|. .... ..+. ...++-+.|.+. ..++||.+.++++.|+++|||+-.|-|
T Consensus 300 ~~~gIpv~I~n~~~p~~~GT~I~--~~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s 377 (510)
T 2cdq_A 300 REGEIPVRVKNSYNPKAPGTIIT--KTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT 377 (510)
T ss_dssp HHHTCCEEEEETTSTTSCCEEEE--SCCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHCCCeEEEEccCcCCCCCeEEe--ccccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe
Confidence 45788888877665444457663 1111 1100 001223444454 357899999999999999999999954
Q ss_pred eeCCCCCCCCCCCCCCCCcceeEEEEEEeecCC----CcHHHHHHHHHHHh
Q 048784 217 RPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASM----ADQKAQNALRHLKE 263 (282)
Q Consensus 217 RP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~----~~~~~~~al~~l~~ 263 (282)
- . -...|.||-+.-. ....+.+++++|+.
T Consensus 378 s---e---------------~sis~~v~~~~~~~~~~~~~~l~~~~~el~~ 410 (510)
T 2cdq_A 378 S---E---------------VSISLTLDPSKLWSRELIQQELDHVVEELEK 410 (510)
T ss_dssp E---T---------------TEEEEEECCGGGSSSCCCHHHHHHHHHHHTT
T ss_pred C---C---------------CeEEEEEechHhhhhhHHHHHHHHHHHHhCC
Confidence 2 1 2578888753211 12455666666764
No 105
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=44.47 E-value=21 Score=31.71 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=35.7
Q ss_pred CCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHcCCCCeEEEee
Q 048784 3 RGAYSESAAEKAYP----NCEAVPCEQFDTAFEAVERWLVDRAVLPI 45 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvPi 45 (282)
.||-+|.++..+.. +.+.+|+.+..+++.+|..|++|.++...
T Consensus 138 ~Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~ 184 (301)
T 2qpq_A 138 NGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTA 184 (301)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEH
T ss_pred CCcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcH
Confidence 37899998876542 35678999999999999999999998763
No 106
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=44.01 E-value=23 Score=31.71 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=35.9
Q ss_pred CCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHcCCCCeEEEee
Q 048784 3 RGAYSESAAEKAYP----NCEAVPCEQFDTAFEAVERWLVDRAVLPI 45 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvPi 45 (282)
.||-+|.++..+.. +.+.+|+....+++.+|..|++|.++...
T Consensus 147 ~Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~ 193 (312)
T 2f5x_A 147 IGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQT 193 (312)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEH
T ss_pred CCcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEech
Confidence 37999998876542 35678999999999999999999998764
No 107
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=43.83 E-value=46 Score=29.32 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=52.6
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC----CCCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV----KVEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~----~l~~I~- 91 (282)
+++++.+.+-.++.++|.+|++|+|+......+. ..-...++.+++-+.-.-...+++.++. +++|.+
T Consensus 39 dVei~~~~~~~~~~~al~sG~~D~g~~~~~~~~~-------a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLkG 111 (342)
T 4esw_A 39 DIAILEPSNPSDVTELVGSGKVDMGLKAMVGTLA-------AKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLKG 111 (342)
T ss_dssp EEEEEEESSGGGHHHHHHHTSSSEEEEEHHHHHH-------HHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGTT
T ss_pred eEEEEeCCChHHHHHHHHcCCcCEEEecHHHHHH-------HHHCCCCeEEEEEeccCCcccccccccccccCCHHHhCC
Confidence 4688899999999999999999999865432221 1112245666665543333455554331 234443
Q ss_pred -EEE-echHHHHHHHHHHHhcCC
Q 048784 92 -RVL-SHPQALAQCENTLTKLGL 112 (282)
Q Consensus 92 -~V~-SHpqal~QC~~fl~~~~~ 112 (282)
+|. .........+.+|++.++
T Consensus 112 K~ig~~~~~~~~~l~~~L~~~Gl 134 (342)
T 4esw_A 112 KRIGYVGEFGKIQVDELTKHYGM 134 (342)
T ss_dssp CEEEESSSHHHHHHHHHHGGGTC
T ss_pred CEEEecCCchHHHHHHHHHHcCC
Confidence 443 223334566778887654
No 108
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=42.75 E-value=65 Score=25.95 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=60.2
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I~-- 91 (282)
+.++++. +..++++++.+|++|.++.++.-+.+- ...++. ..++. .....++++++. +++|++
T Consensus 82 ~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~~--~~~~~~--~~p~~-------~~~~~~~~~~~~~i~~~~dL~g~ 149 (259)
T 2v25_A 82 KIKLVAV-NAKTRGPLLDNGSVDAVIATFTITPER--KRIYNF--SEPYY-------QDAIGLLVLKEKKYKSLADMKGA 149 (259)
T ss_dssp SEEEEEC-CTTTHHHHHHTTSCSEECSSCBCCHHH--HTTEEE--CSCSE-------EEEEEEEEEGGGCCCSGGGCTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEecCccCHHH--HhcCcc--cccce-------eCceEEEEeCCCCCCCHHHhCCC
Confidence 3566777 458999999999999987543211100 000110 11111 122233333321 233332
Q ss_pred EEEech--HHHHHHHHHHHhcCC--eEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 RVLSHP--QALAQCENTLTKLGL--VREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 ~V~SHp--qal~QC~~fl~~~~~--~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|.... ......++++.+.+. ..+.+.+..++.+.+..+ .-.|++.....+.
T Consensus 150 ~i~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 205 (259)
T 2v25_A 150 NIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAK--RVDAFSVDKSILL 205 (259)
T ss_dssp EEEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHT
T ss_pred EEEEecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcC--CCcEEEecHHHHH
Confidence 343221 112233455555543 566778888888888876 4567887766554
No 109
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=42.69 E-value=93 Score=29.39 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=61.4
Q ss_pred HHHcCCceeecccccCCCCceEEEEEeeCCCCC---CCC----CCcEEEEEEE---cCCCccHHHHHHHHHHHCCceeee
Q 048784 144 AAIYGLNILAEDIQDDCDNVTRFLMLAREPIIP---GTD----RPFKTSIVFS---LEEGPGVLFKALAVFALRQINLTK 213 (282)
Q Consensus 144 a~~ygL~vl~~~I~d~~~N~TRF~vl~~~~~~~---~~~----~~~ktsi~~~---~~~~pG~L~~~L~~F~~~~INlt~ 213 (282)
|..+|.++...+..+...--|.|. ......+ .-. ..+-+.|.+. .++.||.+.++++.|+++|||+-.
T Consensus 254 a~~~~ipi~i~~~~~p~~~GT~i~--~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~ 331 (446)
T 3tvi_A 254 VKDSGIPINIKNTNKPSDPGTLIL--SDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH 331 (446)
T ss_dssp HHHSSCCEEEEETTBTTSCCEEEE--CTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE
T ss_pred HHHcCCeEEEecCCCCCCCCEEEe--cCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE
Confidence 457899998888766444457663 1111101 001 1122334443 357899999999999999999998
Q ss_pred eeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHhhc
Q 048784 214 IESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFA 265 (282)
Q Consensus 214 IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~~ 265 (282)
|.+-. ....|.|+-+.-. ...++++++|++..
T Consensus 332 i~~~~------------------~~is~~V~~~d~~--~~~~~~~~el~~~~ 363 (446)
T 3tvi_A 332 MPSGV------------------DSVSLVIEDCKLD--GKCDKIIEEIKKQC 363 (446)
T ss_dssp BCEET------------------TEEEEEEEHHHHT--TTHHHHHHHHHHHS
T ss_pred EecCC------------------CEEEEEEecchHH--HHHHHHHHHHHHhc
Confidence 85421 2567888754211 14567788887653
No 110
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=42.63 E-value=1.5e+02 Score=24.80 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=62.6
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I~-- 91 (282)
+.++++.+ ..++++++.+|++|.++-++.-+.+ ....+... .-+......++++++. +++|++
T Consensus 87 ~~~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~~~----------r~~~~~~s-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 154 (292)
T 1xt8_A 87 KVQFVLVE-AANRVEFLKSNKVDIILANFTQTPQ----------RAEQVDFC-SPYMKVALGVAVPKDSNITSVEDLKDK 154 (292)
T ss_dssp CEEEEECC-GGGHHHHHHTTSCSEECSSCBCCHH----------HHTTEEEC-CCCEEEEEEEEEETTCCCCSSGGGTTS
T ss_pred eEEEEEcC-HHHHHHHHhCCCeeEEeecCCCCcc----------hhcceeee-ccceecceEEEEECCCCCCCHHHhCCC
Confidence 45667765 6899999999999987533211100 00011110 1122333456665542 344442
Q ss_pred EEEechHHHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 RVLSHPQALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|..-. .... ..++.+. +...+.+.|..++.+++..+ +-+|++.....+.
T Consensus 155 ~i~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--~vDa~~~~~~~~~ 206 (292)
T 1xt8_A 155 TLLLNK-GTTA-DAYFTQNYPNIKTLKYDQNTETFAALMDK--RGDALSHDNTLLF 206 (292)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EEEEeC-CCcH-HHHHHHhCCCceEEEcCCHHHHHHHHHcC--CccEEEecHHHHH
Confidence 554432 2222 3455543 56677788888899988876 5667887766554
No 111
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=42.32 E-value=29 Score=28.41 Aligned_cols=112 Identities=8% Similarity=-0.005 Sum_probs=61.7
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC-----CCCCcc-
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV-----KVEDLK- 91 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~-----~l~~I~- 91 (282)
.++++. ++.+++.++.+|++|.++-++.-+-+-. ..++ ...++ ......++++++. +++|++
T Consensus 54 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~~~~--~s~p~-------~~~~~~~~~~~~~~~~i~~~~dL~~ 121 (257)
T 2q88_A 54 VVASIS-EYGAMIPGLQAGRHDAITAGLFMKPERC--AAVA--YSQPI-------LCDAEAFALKKGNPLGLKSYKDIAD 121 (257)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSCCBCCHHHH--TTSE--ECSCC-------CEECEEEEEETTCTTCCCBHHHHHH
T ss_pred eeEEeC-CHHHHHHHHHCCCcCEEEecccCCHHHH--hccc--cccch-------hcCceEEEEECCCccCCCCHHHHhc
Confidence 556666 4899999999999998863332111100 0000 01111 1223455555543 223333
Q ss_pred ----EEEechHHHHHHHHHHHhcCC---eEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 ----RVLSHPQALAQCENTLTKLGL---VREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 ----~V~SHpqal~QC~~fl~~~~~---~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....- ... ..+|.+.+. ..+.+.+..++.+++..+ +-.|+|.....+.
T Consensus 122 ~~g~~i~~~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~i~~~~~~~ 178 (257)
T 2q88_A 122 NPDAKIGAPGG-GTE-EKLALEAGVPRDRVIVVPDGQSGLKMLQDG--RIDVYSLPVLSIN 178 (257)
T ss_dssp CTTCCEEECTT-SHH-HHHHHHTTCCGGGEEECSSHHHHHHHHHHT--SCSEEEEEHHHHH
T ss_pred cCCceEEEECC-ccc-HHHHHhcCCCCceEEEcCCHHHHHHHHHcC--CCcEEEcCHHHHH
Confidence 3433222 122 346666533 567788889999999887 4667887766554
No 112
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=42.28 E-value=93 Score=26.16 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=64.6
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeee-ccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIEN-SLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiEN-S~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I~- 91 (282)
+.++++++ +.++++++.+|++|+++..+.- +.+. ...++ ...+ +......++++++. +++|++
T Consensus 97 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~t~~r--~~~~~--~~~p-------~~~~~~~l~~~~~~~i~s~~dL~G 164 (283)
T 2yln_A 97 KVEFKETQ-WDSMMAGLKAGRFDVVANQVGLTSPER--QATFD--KSEP-------YSWSGAVLVAHNDSNIKSIADIKG 164 (283)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCCCCSHHH--HHHEE--ECSC-------SEEECEEEEEETTCSCCSGGGCTT
T ss_pred ceEEEECC-HHHHHHHHHCCCcCEEEecCccCChhh--hcceE--eccC-------eeeecEEEEEECCCCCCCHHHhCC
Confidence 45778887 8999999999999998743221 1000 00001 0011 12233455655542 334442
Q ss_pred -EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 -RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 -~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|..-.-. . -..+|.+.++..+.+.+..++.+.+..+ .-.|++.....+.
T Consensus 165 ~~v~v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~i~~~~~~~ 215 (283)
T 2yln_A 165 VKTAQSLTS-N-YGEKAKAAGAQLVPVDGLAQSLTLIEQK--RADATLNDELAVL 215 (283)
T ss_dssp SEEEECTTS-H-HHHHHHHTTCEEEECSSHHHHHHHHHTT--SCCEEEEEHHHHH
T ss_pred CEEEEecCc-h-HHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 55442221 1 2346766677777788888888888876 4567777665543
No 113
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=42.27 E-value=63 Score=26.43 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=40.4
Q ss_pred EEEEE-EEcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHH
Q 048784 183 KTSIV-FSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHL 261 (282)
Q Consensus 183 ktsi~-~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l 261 (282)
|.|++ --.++.||.+.++++.+++.|||+..|-+- .. .-.|.|+-+ ...+|++.|
T Consensus 98 ~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS--ei----------------~Is~vV~~~------d~~~Av~aL 153 (181)
T 3s1t_A 98 KVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS--EI----------------RISVLCRDT------ELDKAVVAL 153 (181)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--TT----------------EEEEEEEGG------GHHHHHHHH
T ss_pred EEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC--CC----------------EEEEEEeHH------HHHHHHHHH
Confidence 55554 345688999999999999999998888722 11 457777753 334566666
Q ss_pred Hhh
Q 048784 262 KEF 264 (282)
Q Consensus 262 ~~~ 264 (282)
.+.
T Consensus 154 H~~ 156 (181)
T 3s1t_A 154 HEA 156 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 114
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=41.69 E-value=46 Score=26.70 Aligned_cols=114 Identities=8% Similarity=-0.015 Sum_probs=60.2
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecC-CC---CCCCcc--
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANP-GV---KVEDLK-- 91 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~-~~---~l~~I~-- 91 (282)
.++++. ++.++++++.+|++|.++-++--+-+.. . .+... .-+......+++++ +. +++|++
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~-----~~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLSYTKERA-----E-----KYLYA-APIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCCCCHHHH-----H-----HEEEC-CCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccccChhhh-----h-----ceeec-cceecCceEEEEECCCCCCCCHHHhCCC
Confidence 467777 9999999999999998763322111100 0 01000 11222334555554 32 233432
Q ss_pred EEEechH--HHHHHHHHHHhcC---CeEEEe-cCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 RVLSHPQ--ALAQCENTLTKLG---LVREAV-DDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 ~V~SHpq--al~QC~~fl~~~~---~~~~~~-~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+|....- .....++++..++ +..... .|..++.+++..+ +-.|+|+....+.
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~ 174 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDG--QFDYKIFDKIGVE 174 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcC--CceEEEecHHHHH
Confidence 4433221 1222333443443 344433 3778888888876 5678887766654
No 115
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=41.24 E-value=27 Score=30.28 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=33.8
Q ss_pred CCcHHHHHHHhhCC----CCceeecC-CHHHHHHHHHcCCCCeEEEe
Q 048784 3 RGAYSESAAEKAYP----NCEAVPCE-QFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~----~~~~~~~~-s~~~v~~av~~g~~d~gVvP 44 (282)
+||-+|...+.++. +.+++... ++.++..++.+|++|.+++|
T Consensus 104 ~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 104 NGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp TTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 67878876655432 56788877 89999999999999999986
No 116
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=40.84 E-value=73 Score=28.35 Aligned_cols=144 Identities=15% Similarity=0.048 Sum_probs=77.2
Q ss_pred CCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHcCCCCeEEEeeeec--------------------
Q 048784 2 VRGAYSESAAEKAY--------PNCEAVPCEQ-----FDTAFEAVERWLVDRAVLPIENS-------------------- 48 (282)
Q Consensus 2 P~GTfS~~Aa~~~~--------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiENS-------------------- 48 (282)
|+|+..+.++..+. +..++..+.+ -.+++++|..|.+|.+++..-..
T Consensus 18 ~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P~~~~~~lPfl~~~~~ 97 (327)
T 2hpg_A 18 APGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGVMNLAYFIDFMG 97 (327)
T ss_dssp STTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGGGGSTTHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhCccHHhccCCeEECCCC
Confidence 56666666665531 2244444443 37899999999999998864210
Q ss_pred --------------cccceecc-cccccc-CCeEEEEE-EEEeeeeeeeecCCCCCCCcc--EEEechHHHHHHHHHHHh
Q 048784 49 --------------LGGSIHRN-YDLLLR-HRLHIVGE-VKFAVRHCLLANPGVKVEDLK--RVLSHPQALAQCENTLTK 109 (282)
Q Consensus 49 --------------~~G~V~~t-~d~L~~-~~l~I~~E-~~l~I~~~L~a~~~~~l~~I~--~V~SHpqal~QC~~fl~~ 109 (282)
..|.+..- .+.+.+ .++++.+- ......+....++=.+++|++ +|..-+-. -...+++.
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~~~~~~~pI~s~~DLkG~KiRv~~~~--~~~~~~~a 175 (327)
T 2hpg_A 98 AKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRHFVTNKPIRKPEDLNGLRIRTPGAP--AWQESIRS 175 (327)
T ss_dssp CCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEESSCCSSGGGGTTCEEECCSSH--HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCcceeEecCCCCCCHHHHCCCEEEeCCCH--HHHHHHHH
Confidence 11211111 111223 56777765 444444333223334566776 66654322 23578888
Q ss_pred cCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCc
Q 048784 110 LGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLN 150 (282)
Q Consensus 110 ~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~ 150 (282)
.++..++.. .++....+..+ .-+|+..+.....-.++.
T Consensus 176 lGa~pv~m~-~~Evy~ALq~G--~VDg~~~p~~~~~~~~~~ 213 (327)
T 2hpg_A 176 LGAIPVAVN-FGEIYTAVQTR--AVDGAELTYANVYNGGLY 213 (327)
T ss_dssp HTSEEECCC-GGGHHHHHHTT--SCSEEEECHHHHHHTTGG
T ss_pred cCCEeeecC-HHHHHHHHHcC--CeeEEECCHHHHHHcChh
Confidence 888765543 23344444433 346677776655444553
No 117
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=40.82 E-value=27 Score=31.29 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=36.0
Q ss_pred CCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHcCCCCeEEEee
Q 048784 3 RGAYSESAAEKAYP----NCEAVPCEQFDTAFEAVERWLVDRAVLPI 45 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvPi 45 (282)
.||-+|.++..+.. +.+.+|+....+++.+|..|++|.++...
T Consensus 151 ~Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~ 197 (314)
T 2dvz_A 151 TCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNL 197 (314)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEH
T ss_pred CCcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcH
Confidence 38999999877642 35678999999999999999999998754
No 118
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=40.53 E-value=80 Score=26.91 Aligned_cols=120 Identities=17% Similarity=0.131 Sum_probs=57.6
Q ss_pred CCCCceeec-CCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCCCCcc--
Q 048784 15 YPNCEAVPC-EQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLK-- 91 (282)
Q Consensus 15 ~~~~~~~~~-~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I~-- 91 (282)
+|+.++... .+-.++.+.+.+|++|+|++.......+... ..|.+.++.+ ..+-.|-|.. ...+++++.
T Consensus 131 ~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~----v~~~~hpl~~-~~i~~~dL~~~ 202 (315)
T 1uth_A 131 APHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQ---RRLFRHRYVC----MFRKDHPSAK-SPMSLKQFSEL 202 (315)
T ss_dssp CTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCTTEEE---EEEEEECEEE----EEETTCSSCC-SSCCHHHHHHS
T ss_pred CCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCCCCCceE---EEeeccceEE----EEeCCCCCcC-CCCCHHHHhcC
Confidence 577665433 3446788999999999999753211111110 1111112211 1223333322 222333432
Q ss_pred -EE-EechH-HHHHHHHHHHhcCCe---EEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 92 -RV-LSHPQ-ALAQCENTLTKLGLV---REAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 92 -~V-~SHpq-al~QC~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
-| +..+. .......|+.+.+.. ...+.|......+|+.+ .+ .|+.+...++
T Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g--~g-iailp~~~~~ 259 (315)
T 1uth_A 203 EHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST--DL-IATVPQRFAV 259 (315)
T ss_dssp EEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS--SC-BEEEEHHHHH
T ss_pred CeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcC--CE-EEEcHHHHHH
Confidence 23 22211 123456677766542 24456666666667665 33 4666665554
No 119
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=40.07 E-value=18 Score=30.91 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=27.4
Q ss_pred ceeEEEEEEee---cCCCcHHHHHHHHHHHhhcCceEEEccccCCC
Q 048784 236 YFDYLFYVDFE---ASMADQKAQNALRHLKEFATFLRVLGSYPIDT 278 (282)
Q Consensus 236 ~~~y~F~vd~~---g~~~~~~~~~al~~l~~~~~~v~~LGsY~~~~ 278 (282)
.++|.+|||-+ ..-+.+.+.+++ +....| +.|+||...
T Consensus 53 ~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DV-V~GsYp~K~ 93 (203)
T 2c0n_A 53 DYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDV-VCGYYYLKT 93 (203)
T ss_dssp TCCEEEEECTTEEEEECCHHHHHHHH----HHTCSE-EEEECBCTT
T ss_pred CCCEEEEEeCCCCccccCHHHHHHHH----hCCCCE-EEEEeeccC
Confidence 37899999998 766666666666 334455 899999753
No 120
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=39.97 E-value=31 Score=25.05 Aligned_cols=39 Identities=18% Similarity=-0.023 Sum_probs=30.1
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhc
Q 048784 92 RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFE 130 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~ 130 (282)
-|=.+|......+.+|.+.+..+..+.|..+|.+.+.+.
T Consensus 11 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~ 49 (132)
T 3lte_A 11 VVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF 49 (132)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc
Confidence 344578888888999988788777788888888877654
No 121
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=39.65 E-value=1.7e+02 Score=24.63 Aligned_cols=121 Identities=22% Similarity=0.156 Sum_probs=60.8
Q ss_pred hCCCCceee-cCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeee-cCC-CCCCCc
Q 048784 14 AYPNCEAVP-CEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLA-NPG-VKVEDL 90 (282)
Q Consensus 14 ~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a-~~~-~~l~~I 90 (282)
.+|+.++.. ..+..++.+.+.+|++|+|++.......|... ..|.+.++. +.++-.|-|.. +.. .+++|+
T Consensus 115 ~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~----~v~~~~hpla~~~~~~i~~~dL 187 (312)
T 2h9b_A 115 AHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKH---SLLRNERLM----VAVHASHPLNQMKDKGVHLNDL 187 (312)
T ss_dssp TCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCTTEEE---EEEEEEEEE----EEEETTSGGGGGTTTCBCGGGS
T ss_pred HCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCCCCCCceE---EEeecceEE----EEEcCCCccccccCCCCCHHHH
Confidence 357766543 34578999999999999999853321111110 011111111 22333444543 322 334443
Q ss_pred ---cEEEech----HHHHHHHHHHHhcCCe---EEEecCHHHHHHHhhhcCCCCeEEecChhhH
Q 048784 91 ---KRVLSHP----QALAQCENTLTKLGLV---REAVDDTAGAAKYVSFEQLKDAGAVASSSAA 144 (282)
Q Consensus 91 ---~~V~SHp----qal~QC~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa 144 (282)
.-|.-.+ ....+..+|+.+.+.. ...++|...+..+|+.+ .+ .|+.+...+
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g--~G-ia~lp~~~~ 248 (312)
T 2h9b_A 188 IDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAG--EG-ISLVPASTQ 248 (312)
T ss_dssp TTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTT--SC-BEEEEGGGG
T ss_pred cCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHcC--Cc-EEEecchhh
Confidence 3343211 2234556677765442 34556666666777665 34 455555543
No 122
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=38.08 E-value=25 Score=30.38 Aligned_cols=42 Identities=10% Similarity=-0.017 Sum_probs=33.7
Q ss_pred CCcHHHHHHHhhC---C----CCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 3 RGAYSESAAEKAY---P----NCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 3 ~GTfS~~Aa~~~~---~----~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
.||-++...+.++ + +.+++++.+..+++.++.+|++|.++++
T Consensus 146 ~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 146 PGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp TTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 6887777665543 2 3578899999999999999999999985
No 123
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=38.02 E-value=1.7e+02 Score=24.18 Aligned_cols=109 Identities=15% Similarity=0.070 Sum_probs=54.4
Q ss_pred CCCCcee-ecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccc-cCCeEEEEEEEEeeeeeeeecCCCCCC---C
Q 048784 15 YPNCEAV-PCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLL-RHRLHIVGEVKFAVRHCLLANPGVKVE---D 89 (282)
Q Consensus 15 ~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~~~l~I~~E~~l~I~~~L~a~~~~~l~---~ 89 (282)
+|+.++. -..+-.++.+.+.+|++|+|++.-...-.+... ..|. ...+. +.++-.|-|...+..+++ +
T Consensus 121 ~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~----~v~~~~~pl~~~~~~~~~dL~~ 193 (306)
T 3fzv_A 121 YPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIET---EPLMPPQRPH----ALLPEGHRFAGQAQVSLRDLCL 193 (306)
T ss_dssp CTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCTTEEE---EESSCCBCCE----EEEETTCTTTTSSEECHHHHTT
T ss_pred CCCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccccccce---eeeeeccccE----EEecCCCcccCCCCCCHHHHcC
Confidence 5665543 234667889999999999999863322222111 1122 22222 223444544433222222 2
Q ss_pred ccEEEe-chHHHHHHHHHHHhcCCe---EEEecCHHHHHHHhhhc
Q 048784 90 LKRVLS-HPQALAQCENTLTKLGLV---REAVDDTAGAAKYVSFE 130 (282)
Q Consensus 90 I~~V~S-Hpqal~QC~~fl~~~~~~---~~~~~sTa~Aa~~v~~~ 130 (282)
..-|.- .+..-.....|+.+.+.. ...+.|...+..++..+
T Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g 238 (306)
T 3fzv_A 194 EPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQG 238 (306)
T ss_dssp SCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTT
T ss_pred CCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC
Confidence 233432 222233445566665432 34556666666677654
No 124
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=37.98 E-value=44 Score=24.72 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=50.1
Q ss_pred EEEechHHHHHHHHHHHhcCCe--EEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccC-CCCceEEEE
Q 048784 92 RVLSHPQALAQCENTLTKLGLV--REAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDD-CDNVTRFLM 168 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~~~~--~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~-~~N~TRF~v 168 (282)
.|-.++......+.+|.+.+.. ...+.|..+|.+.+.+. +....|.........|+.++.. |... ....+++++
T Consensus 10 ivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~-lr~~~~~~~~pii~ 86 (144)
T 3kht_A 10 VVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSA-VRKPGANQHTPIVI 86 (144)
T ss_dssp EECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHH-HHSSSTTTTCCEEE
T ss_pred EEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHH-HHhcccccCCCEEE
Confidence 3445788888899999987665 56677778888777654 3455665554445566666553 3322 344577777
Q ss_pred EeeC
Q 048784 169 LARE 172 (282)
Q Consensus 169 l~~~ 172 (282)
++..
T Consensus 87 ~s~~ 90 (144)
T 3kht_A 87 LTDN 90 (144)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7754
No 125
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=37.97 E-value=96 Score=25.26 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhhC---C-CCc-eeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccc-c--CCeEEEEEEEEe
Q 048784 3 RGAYSESAAEKAY---P-NCE-AVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLL-R--HRLHIVGEVKFA 74 (282)
Q Consensus 3 ~GTfS~~Aa~~~~---~-~~~-~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~--~~l~I~~E~~l~ 74 (282)
.||..+.....+. + ... .+...+..+++.+|.+|++|..+. +.. +++.+. . ..+.++++..-+
T Consensus 125 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~---~~~------~~~~~~~~~~~~~~~~~~~~~~ 195 (243)
T 4gvo_A 125 ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIS---TPF------AVDFQNKTSAIKEKVVGDVLSN 195 (243)
T ss_dssp TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEE---CHH------HHHHHHHTCSSCEEEEEEEEEC
T ss_pred cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEc---cHH------HHHHHHhhCCCceEEeccCCCC
Confidence 4666666655432 2 222 346788999999999999997653 221 112111 1 246777777766
Q ss_pred eeeeeeecCCCCCCCccEEEechHHHHHHHHHHHh
Q 048784 75 VRHCLLANPGVKVEDLKRVLSHPQALAQCENTLTK 109 (282)
Q Consensus 75 I~~~L~a~~~~~l~~I~~V~SHpqal~QC~~fl~~ 109 (282)
...+++.+++ +|+-..+-.++|.+
T Consensus 196 ~~~~~~~~k~-----------~~~l~~~in~~l~~ 219 (243)
T 4gvo_A 196 AKVYFMLGKD-----------ETKLSKKVDEALQS 219 (243)
T ss_dssp CEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred CcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 6667766654 35555555555554
No 126
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=37.94 E-value=1.7e+02 Score=24.15 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=63.0
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCC---CCCcc--E
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVK---VEDLK--R 92 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~---l~~I~--~ 92 (282)
.++++. ++.+++.++.+|++|+++-++- .+.+. ...+... .-+......++++++.. ++|++ +
T Consensus 65 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~t~~r--~~~~~~s-~p~~~~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 65 VKLIPI-TSQNRIPLLQNGTFDFECGSTT--------NNVER--QKQAAFS-DTIFVVGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCB--------CCHHH--HTTCEEE-EEEEEEEEEEEEETTSSCCSGGGGTTCE
T ss_pred EEEEEC-CHHHHHHHHHCCCeeEEecccc--------CCcch--hhccccc-ceeeecceEEEEECCCCCCCHHHcCCCE
Confidence 456777 4588999999999998753211 11111 1112111 23344555677766543 33432 4
Q ss_pred EEechH--HHHHHHHHHHhc--CCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 93 VLSHPQ--ALAQCENTLTKL--GLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 93 V~SHpq--al~QC~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
|..-.- .......++... +...+.+.|..++.+++..+ .-.|++.+...+.
T Consensus 133 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--~vDa~i~~~~~~~ 187 (287)
T 2vha_A 133 VVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESG--RAVAFMMDDALLA 187 (287)
T ss_dssp EEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHH
T ss_pred EEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcC--CeeEEEeChHHHH
Confidence 443221 111223333332 45677888999999988876 4567777766554
No 127
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=37.69 E-value=25 Score=25.41 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=48.5
Q ss_pred EEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccC-CCCceEEEEEee
Q 048784 93 VLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDD-CDNVTRFLMLAR 171 (282)
Q Consensus 93 V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~-~~N~TRF~vl~~ 171 (282)
|=.++......+.+|.+.+..+..+.|..+|.+.+.+.. ....|.........|+.++.. |... ....+.+++++.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 9 VEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQ-LRALPMEKTSKFVAVSG 85 (127)
T ss_dssp ECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHH-HHHSCCSSCCEEEEEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHH-HHhhhccCCCCEEEEEC
Confidence 334777888889999988877777788888888877652 344444333233445554443 3322 245678888876
Q ss_pred CC
Q 048784 172 EP 173 (282)
Q Consensus 172 ~~ 173 (282)
..
T Consensus 86 ~~ 87 (127)
T 3i42_A 86 FA 87 (127)
T ss_dssp C-
T ss_pred Cc
Confidence 53
No 128
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=37.64 E-value=26 Score=30.08 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHhhCC-----CCceeecCCHHHHHHHHHcCCCCeEEEeee
Q 048784 2 VRGAYSESAAEKAYP-----NCEAVPCEQFDTAFEAVERWLVDRAVLPIE 46 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~-----~~~~~~~~s~~~v~~av~~g~~d~gVvPiE 46 (282)
|.|.|+.++..+. + ..+++...+..+++..|.+|++|.|++...
T Consensus 144 p~G~~a~~~l~~~-g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s 192 (253)
T 3gzg_A 144 PAGSYAAAALRKL-GQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGS 192 (253)
T ss_dssp HHHHHHHHHHHHT-TCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred chHHHHHHHHHHc-CcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhh
Confidence 5677877766553 2 235678899999999999999999998643
No 129
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=37.49 E-value=1.5e+02 Score=23.51 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=60.4
Q ss_pred hCCCCcee-ecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCC---CC
Q 048784 14 AYPNCEAV-PCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKV---ED 89 (282)
Q Consensus 14 ~~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l---~~ 89 (282)
.+|+.++. -..+-.++.+++.+|++|+|++.... . + +..+.......++++.++-.+ ..
T Consensus 52 ~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~-------~--------~~~~~l~~~~~~~v~~~~~~l~~~~~ 114 (238)
T 3onm_A 52 LYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--D-------S--------HPHVILRTSPTLWYCSVDYQFQPGEP 114 (238)
T ss_dssp HCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC----------C--------CCEEEEEEECEEEEEETTCCCCTTSC
T ss_pred HCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--C-------C--------cceEEeecCCEEEEEcCCCCcccCCC
Confidence 35776653 34567789999999999999985431 1 1 111222333445555444322 23
Q ss_pred ccEEE-echH-HHHHHHHHHHhcCCe---EEEecCHHHHHHHhhhcCCCCeEEecChhhH
Q 048784 90 LKRVL-SHPQ-ALAQCENTLTKLGLV---REAVDDTAGAAKYVSFEQLKDAGAVASSSAA 144 (282)
Q Consensus 90 I~~V~-SHpq-al~QC~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa 144 (282)
+.-|. .+.. ......+|+.+.+.. ...+.|...+.++|+.+ .+ .|+.+...+
T Consensus 115 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g--~G-iailp~~~~ 171 (238)
T 3onm_A 115 VPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG--LG-VTARPIEMM 171 (238)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT--SC-BEEEEGGGC
T ss_pred cceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC--Ce-EEEechHHc
Confidence 33332 2222 234456677766543 23456666677777765 33 455555443
No 130
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=36.66 E-value=24 Score=26.00 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=49.1
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccC-CCCceEEEEEe
Q 048784 92 RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDD-CDNVTRFLMLA 170 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~-~~N~TRF~vl~ 170 (282)
.|=.++......+.+|.+.+.....+.|..+|.+.+.+. +....|.........|+.++.. |... ....+.+++++
T Consensus 11 ivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s 87 (140)
T 3grc_A 11 ICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQDGVSLIRA-LRRDSRTRDLAIVVVS 87 (140)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHH-HHTSGGGTTCEEEEEC
T ss_pred EEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHH-HHhCcccCCCCEEEEe
Confidence 344577888888999998888877788888888877765 2345555433334445555443 3322 33457777776
Q ss_pred eC
Q 048784 171 RE 172 (282)
Q Consensus 171 ~~ 172 (282)
..
T Consensus 88 ~~ 89 (140)
T 3grc_A 88 AN 89 (140)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 131
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=35.90 E-value=1.5e+02 Score=22.78 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=25.0
Q ss_pred hCCCCceeec-CCHHHHHHHHHcCCCCeEEEee
Q 048784 14 AYPNCEAVPC-EQFDTAFEAVERWLVDRAVLPI 45 (282)
Q Consensus 14 ~~~~~~~~~~-~s~~~v~~av~~g~~d~gVvPi 45 (282)
.+|+.++... .+-.++.+++.+|++|+|++.-
T Consensus 29 ~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 29 TAPKMPLMLEENYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp HSTTCCEEEEEECHHHHHHHHHHTSSSEEEEES
T ss_pred HCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcC
Confidence 4677765433 4677899999999999999874
No 132
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=35.85 E-value=52 Score=23.74 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=46.0
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccCCCCceEEEEEee
Q 048784 92 RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLMLAR 171 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~~N~TRF~vl~~ 171 (282)
-|=.+|......+.+|.+.+.....+.|..+|.+.+.+. +....|.........|+.++.. |... ...+.+++++.
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~-l~~~-~~~~~ii~~t~ 87 (130)
T 3eod_A 12 IVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKLLEH-IRNR-GDQTPVLVISA 87 (130)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC-----CHHHHHH-HHHT-TCCCCEEEEEC
T ss_pred EEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHH-HHhc-CCCCCEEEEEc
Confidence 444577778888899998888777778888888877654 3455665544445566666543 3222 12455666654
Q ss_pred C
Q 048784 172 E 172 (282)
Q Consensus 172 ~ 172 (282)
.
T Consensus 88 ~ 88 (130)
T 3eod_A 88 T 88 (130)
T ss_dssp C
T ss_pred C
Confidence 3
No 133
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=35.48 E-value=29 Score=25.22 Aligned_cols=75 Identities=13% Similarity=0.018 Sum_probs=43.8
Q ss_pred EechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccC-CCCceEEEEEee
Q 048784 94 LSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDD-CDNVTRFLMLAR 171 (282)
Q Consensus 94 ~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~-~~N~TRF~vl~~ 171 (282)
=.+|......+.+|.+.+.....+.|..+|.+.+.+. +....|.-..-....|+.++.. +... ....+.+++++.
T Consensus 9 dd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~--~~dlvllD~~~p~~~g~~~~~~-l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 9 DDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF--TPDLIVLXIMMPVMDGFTVLKK-LQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB--CCSEEEECSCCSSSCHHHHHHH-HHTSTTTTTSCEEEEES
T ss_pred eCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCCCCcHHHHHHH-HHhcccccCCCEEEEec
Confidence 3478888888889988888877778888887777654 2344444333233444544432 2211 122345555554
No 134
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=35.29 E-value=42 Score=28.39 Aligned_cols=42 Identities=26% Similarity=0.176 Sum_probs=33.2
Q ss_pred CCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCCCeEEEee
Q 048784 3 RGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPI 45 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPi 45 (282)
.||-++...+.+..+.+++.. ++.++..++.+|++|.+++.-
T Consensus 111 ~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ 152 (280)
T 1zbm_A 111 RYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIH 152 (280)
T ss_dssp TTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECS
T ss_pred CCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEec
Confidence 577778777777777677655 668999999999999988653
No 135
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=35.13 E-value=74 Score=31.22 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=42.1
Q ss_pred EcCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHhh
Q 048784 189 SLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEF 264 (282)
Q Consensus 189 ~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~ 264 (282)
..++.||.+.++++.|+++|||.-.|-.-+.... ..+..|.|+-+. -.+..+++++++..
T Consensus 277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~-------------~~~Isftv~~~~---~~~a~~~l~~~~~e 336 (600)
T 3l76_A 277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGN-------------SNDIAFTVVKDL---LNTAEAVTSAIAPA 336 (600)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTT-------------EEEEEEEECGGG---HHHHHHHHHHHGGG
T ss_pred CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCC-------------CceEEEEEeHHH---HHHHHHHHHHHHHH
Confidence 4578999999999999999999998865443331 235677776542 23456677776643
No 136
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=35.10 E-value=2.1e+02 Score=24.30 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=74.0
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCC---CCcc--
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKV---EDLK-- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l---~~I~-- 91 (282)
+++..+. +-..++.|+.+|++|+.+--.-+++.. +.++.. +.++...+...-.-...|+.++...+ +|++
T Consensus 31 ~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~~~~~~---~~~~~~-~~~l~~l~~~~~~~~~~l~Vp~~~~i~si~DL~~~ 105 (256)
T 3l6g_A 31 DVKTTAL-DNAVAWQTVANGQADGMVSAWLPNTHK---TQWQKY-GKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQ 105 (256)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTTH---HHHHHH-GGGEEEEEEEEEEEEEEEEEETTSCCCBGGGCSSG
T ss_pred ceEEEEC-ChHHHHHHHHCCCCeEEEcccCCcccH---HHHHHh-CCceEEccccCCCceEEEEECCccCCCCHHHHHHh
Confidence 3567776 567899999999999866322222111 122221 24576777666555688888775433 4443
Q ss_pred ---EEEechHHHH---HHHHHHHhc-CCe-EEEecCHHHH-----HHHhhhcCCCCeEEecChhhHHHcCCceeec
Q 048784 92 ---RVLSHPQALA---QCENTLTKL-GLV-REAVDDTAGA-----AKYVSFEQLKDAGAVASSSAAAIYGLNILAE 154 (282)
Q Consensus 92 ---~V~SHpqal~---QC~~fl~~~-~~~-~~~~~sTa~A-----a~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~ 154 (282)
+++.=|..+. ...+.++.+ +.. ...+.++..+ .+.+++++.--..+=.+...-..|+|.+|+.
T Consensus 106 ~~g~~~g~~~G~~~~~~~~~~l~~y~gL~~~~~v~~s~~~m~~~l~~A~~~g~~~v~~~w~p~~~~~~~~l~~LeD 181 (256)
T 3l6g_A 106 ANKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMFNKYDLKYLAD 181 (256)
T ss_dssp GGGEEECCCTTCHHHHHHHHHHTTCGGGTTCEEECCCHHHHHHHHHHHHHTTCCCCEEEEESCTHHHHSCEEECBC
T ss_pred cCCeEEecCCCchhhHHHHHHHHhcCCCCCeEEecCCHHHHHHHHHHHHHCCCCEEEEeecCchhhhhcCeEEecC
Confidence 6666665443 123455555 543 3334433221 2233333222233337777777899999974
No 137
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=34.72 E-value=2e+02 Score=24.10 Aligned_cols=116 Identities=16% Similarity=0.021 Sum_probs=62.3
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEE-EeeeeeeeecCCC---CCCCcc-
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVK-FAVRHCLLANPGV---KVEDLK- 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~-l~I~~~L~a~~~~---~l~~I~- 91 (282)
+.+++.+.+-.++++++.+|++|+++....... ...-...++.+++-.. .+...+++++++. +++|++
T Consensus 33 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~s~~dL~G 105 (308)
T 2x26_A 33 KISWVEFPAGPQMLEALNVGSIDLGSTGDIPPI-------FAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKG 105 (308)
T ss_dssp EEEEEECSSHHHHHHHHHHTSCSEEEECSHHHH-------HHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTT
T ss_pred ceEEEECCCcHHHHHHHHCCCCCEEcccCcHHH-------HHHhcCCCeEEEEEecCCCCceEEEEeCCCCCCCHHHcCC
Confidence 356788888889999999999999986432110 0000113444444321 1234567776543 334443
Q ss_pred -EEEechH--HHHHHHHHHHhcCCe---EE-EecCHHHHHHHhhhcCCCCeEEecCh
Q 048784 92 -RVLSHPQ--ALAQCENTLTKLGLV---RE-AVDDTAGAAKYVSFEQLKDAGAVASS 141 (282)
Q Consensus 92 -~V~SHpq--al~QC~~fl~~~~~~---~~-~~~sTa~Aa~~v~~~~~~~~AAI~s~ 141 (282)
+|...+- .....+.+|++.++. +. ...+..++...+..+ .-.|++...
T Consensus 106 k~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G--~vDa~~~~~ 160 (308)
T 2x26_A 106 HKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQG--NVDAWAIWD 160 (308)
T ss_dssp SEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTT--SSSEEEEET
T ss_pred CEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcC--CCCEEEecc
Confidence 5655332 122345667766542 21 234556666767665 344555443
No 138
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=34.71 E-value=25 Score=29.56 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=33.4
Q ss_pred CCCcHHHHHHHhhCC-----CCceeecCCHHHHHHHHHcCCCCeEEEeee
Q 048784 2 VRGAYSESAAEKAYP-----NCEAVPCEQFDTAFEAVERWLVDRAVLPIE 46 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~-----~~~~~~~~s~~~v~~av~~g~~d~gVvPiE 46 (282)
|.|.|+.++..+. + ...++...+..+++..|.+|++|.|++...
T Consensus 128 p~G~~a~~~l~~~-g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s 176 (237)
T 3r26_A 128 PAGIYAKEALQKL-GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGS 176 (237)
T ss_dssp HHHHHHHHHHHHT-TCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred ChHHHHHHHHHHc-CCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEec
Confidence 4677777766543 2 124677889999999999999999998643
No 139
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=34.64 E-value=29 Score=33.66 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=28.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHCCceeeeeeeeeCC
Q 048784 185 SIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLR 220 (282)
Q Consensus 185 si~~~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~ 220 (282)
...|..|.+||+|.+.|+.+.. +-|+|-..=|-..
T Consensus 435 ~~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g 469 (514)
T 1tdj_A 435 LYSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHG 469 (514)
T ss_dssp EEEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTT
T ss_pred EEEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCC
Confidence 3778899999999999999975 5677777777543
No 140
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=34.57 E-value=17 Score=30.01 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=21.1
Q ss_pred EEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 115 EAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 115 ~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
+.+.|..++.+++..+ . .|.|.....+.
T Consensus 169 ~~~~~~~~~~~~l~~g--~-da~i~~~~~~~ 196 (259)
T 3g3k_A 169 VLVKSNEEGIQRVLTS--D-YAFLMESTTIE 196 (259)
T ss_dssp HEESSHHHHHHHHHHS--S-EEEEEEHHHHH
T ss_pred cccCCHHHHHHHHHhC--C-eEEEechHHHH
Confidence 4567888899999886 4 67887766654
No 141
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=33.52 E-value=93 Score=25.79 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCC-----CCCCcc
Q 048784 17 NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV-----KVEDLK 91 (282)
Q Consensus 17 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~-----~l~~I~ 91 (282)
+.+++++ ++.++++++.+|++|.++-.+.- |-+. ...+... .-+......++++++. +++|++
T Consensus 64 ~v~~~~~-~~~~~~~~l~~G~~D~~~~~~~~--------t~~r--~~~~~fs-~p~~~~~~~l~~~~~~~~~i~~~~dL~ 131 (271)
T 2iee_A 64 KVEFKEM-GIDGMLTAVNSGQVDAAANDIDV--------TKDR--EEKFAFS-TPYKYSYGTAIVRKDDLSGIKTLKDLK 131 (271)
T ss_dssp EEEEEEC-CSTTHHHHHHHTSSSEECSSCBC--------CHHH--HTTEEEC-CCSEEEEEEEEECTTTGGGCSSGGGGT
T ss_pred eEEEEEC-CHHHHHHHHHCCCcCEEEeCCcC--------Chhh--ccceEEe-ecceeCCeEEEEECCCCCCCCCHHHhC
Confidence 4567777 88999999999999987743211 1110 0011111 1112234556666543 234443
Q ss_pred --EEEechHHHHHHHHHHHhcCCeEEEecCHHHH--HHHhhhcCCCCeEEecChh
Q 048784 92 --RVLSHPQALAQCENTLTKLGLVREAVDDTAGA--AKYVSFEQLKDAGAVASSS 142 (282)
Q Consensus 92 --~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~A--a~~v~~~~~~~~AAI~s~~ 142 (282)
+|..-.-. .. ..+|++.+...+.+.+..++ .+++..++ -. +|....
T Consensus 132 g~~i~v~~g~-~~-~~~l~~~~~~~~~~~~~~~~~l~~~L~~Gr--vD-~i~~~~ 181 (271)
T 2iee_A 132 GKKAAGAATT-VY-MEVARKYGAKEVIYDNATNEQYLKDVANGR--TD-VILNDY 181 (271)
T ss_dssp TCEEESCTTS-HH-HHHHHHTTCEEEECSSCCHHHHHHHHHHTS--SC-EEEEEH
T ss_pred CCEEEEeCCc-cH-HHHHHHcCCceEEeCChhhHHHHHHHHcCC--cc-EEeccH
Confidence 45433222 22 24666666677777787778 88888763 34 554433
No 142
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=33.26 E-value=1.4e+02 Score=21.62 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=58.7
Q ss_pred ccEEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhh-cCCCCeEEecChhhHHHcCCceeecccccCCCCceEEEE
Q 048784 90 LKRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSF-EQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLM 168 (282)
Q Consensus 90 I~~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~-~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~~N~TRF~v 168 (282)
|=-|=.++....+.+.+|.+.+.....+.+..+|.+.+.+ . .....|.........|+.++.. |.. ....+++++
T Consensus 18 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~~dlvilD~~l~~~~g~~~~~~-l~~-~~~~~~ii~ 93 (138)
T 2b4a_A 18 VTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS--TCDLLIVSDQLVDLSIFSLLDI-VKE-QTKQPSVLI 93 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG--SCSEEEEETTCTTSCHHHHHHH-HTT-SSSCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC--CCCEEEEeCCCCCCCHHHHHHH-HHh-hCCCCCEEE
Confidence 3344457788888889998878877777777778777765 4 2344454333223344444432 333 234688999
Q ss_pred Ee-eCCCCCCCCCCcEEEEEEEcCCCccHHHHHHHH
Q 048784 169 LA-REPIIPGTDRPFKTSIVFSLEEGPGVLFKALAV 203 (282)
Q Consensus 169 l~-~~~~~~~~~~~~ktsi~~~~~~~pG~L~~~L~~ 203 (282)
++ ....... ... ...-++.-+-.+..|...|..
T Consensus 94 ls~~~~~~~~-~~~-~~~~~l~KP~~~~~L~~~i~~ 127 (138)
T 2b4a_A 94 LTTGRHELIE-SSE-HNLSYLQKPFAISELRAAIDY 127 (138)
T ss_dssp EESCC--CCC-CSS-SCEEEEESSCCHHHHHHHHHH
T ss_pred EECCCCCHHH-HHH-HHHheeeCCCCHHHHHHHHHH
Confidence 98 6533221 111 122222223445566666543
No 143
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=32.99 E-value=1.7e+02 Score=25.51 Aligned_cols=134 Identities=6% Similarity=-0.040 Sum_probs=71.8
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccc-cCCeEEEEEEEEeeeeeeeecCC-------CCCCC
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLL-RHRLHIVGEVKFAVRHCLLANPG-------VKVED 89 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~~~l~I~~E~~l~I~~~L~a~~~-------~~l~~ 89 (282)
+++++..+-..+++++.+|++|+.+--.-+. -...++... +.++...+.....-...|+.++. .+++|
T Consensus 38 Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~a~~~~i~si~D 113 (309)
T 1r9l_A 38 VNKPSEVDYNVGYTSLASGDATFTAVNWTPL----HDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQ 113 (309)
T ss_dssp ECCCEECCHHHHHHHHHHTSSCEEEEEEETT----THHHHHHTTGGGTEEECSCSEEEEEEEEEEEHHHHHHHTCCBGGG
T ss_pred eEEeecCchHHHHHHHhcCCceEEeccccCc----cHHHHHHhhcCCcEEEecccCCCceEEEEEchhhhhhcCCCCHHH
Confidence 4555555788999999999999985322111 112233221 23455555443344566666542 35677
Q ss_pred cc----------------EEEechHHHH---HHHHHHHhcCCe--EEEecCHH-----HHHHHhhhcCCCCeEEe-cChh
Q 048784 90 LK----------------RVLSHPQALA---QCENTLTKLGLV--REAVDDTA-----GAAKYVSFEQLKDAGAV-ASSS 142 (282)
Q Consensus 90 I~----------------~V~SHpqal~---QC~~fl~~~~~~--~~~~~sTa-----~Aa~~v~~~~~~~~AAI-~s~~ 142 (282)
++ +++.-|..+. .-...|+.++.. +..+.++. ...+.+.++ ....+.+ .+..
T Consensus 114 L~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~~~~~~~~s~~~~~~~~~~A~~~g-~~~v~~~w~P~~ 192 (309)
T 1r9l_A 114 LKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEG-KPVFYYTWTPYW 192 (309)
T ss_dssp GGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEEEECSCHHHHHHHHHHHHHTT-CCCEEEEEESSS
T ss_pred HcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCCceEEcCCCHHHHHHHHHHHHHCC-CCEEEEeecCch
Confidence 76 6666654322 224566666654 34444432 222233333 2334444 5555
Q ss_pred hHHHc----CCceeeccc
Q 048784 143 AAAIY----GLNILAEDI 156 (282)
Q Consensus 143 Aa~~y----gL~vl~~~I 156 (282)
....| +|.+|+..-
T Consensus 193 ~~~~~~~g~dl~~Le~~~ 210 (309)
T 1r9l_A 193 VSNELKPGKDVVWLQVPF 210 (309)
T ss_dssp HHHHSCBTTTEEECBCSS
T ss_pred HhhhccccCCceEeccCc
Confidence 56677 999987653
No 144
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=31.55 E-value=46 Score=28.86 Aligned_cols=42 Identities=12% Similarity=-0.015 Sum_probs=32.1
Q ss_pred CCCcHHHHHHHhhC---C----CCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAY---P----NCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~---~----~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.||.++....+++ + +.++++. +..+++.++.+|++|.++++
T Consensus 137 ~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 185 (324)
T 3ksx_A 137 QKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIW 185 (324)
T ss_dssp CTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEE
T ss_pred cCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEc
Confidence 46888887666543 2 3466776 79999999999999988765
No 145
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=30.85 E-value=66 Score=27.60 Aligned_cols=138 Identities=15% Similarity=0.116 Sum_probs=69.9
Q ss_pred CCceee-cCCHHHHHHHHHcCCCCeEEEeeee---ccccc--e-----eccccccc-----cCCeEEEEEEEEeeeeeee
Q 048784 17 NCEAVP-CEQFDTAFEAVERWLVDRAVLPIEN---SLGGS--I-----HRNYDLLL-----RHRLHIVGEVKFAVRHCLL 80 (282)
Q Consensus 17 ~~~~~~-~~s~~~v~~av~~g~~d~gVvPiEN---S~~G~--V-----~~t~d~L~-----~~~l~I~~E~~l~I~~~L~ 80 (282)
++++.+ +.+-..+++++.+|++|+++-=.-+ +..+. . .+.++.+. +.++.+.+-....-.+.|+
T Consensus 35 ~Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 114 (275)
T 1sw5_A 35 KAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALA 114 (275)
T ss_dssp CEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEE
T ss_pred cEEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEE
Confidence 356666 6678899999999999988510000 01111 0 00222211 1368888876555567888
Q ss_pred ecCC-------CCCCCcc------EEEechHHHH---HHHHHHHhcCCe--EEEecCHHHHHHHhhhcCCCCeEEe-cCh
Q 048784 81 ANPG-------VKVEDLK------RVLSHPQALA---QCENTLTKLGLV--REAVDDTAGAAKYVSFEQLKDAGAV-ASS 141 (282)
Q Consensus 81 a~~~-------~~l~~I~------~V~SHpqal~---QC~~fl~~~~~~--~~~~~sTa~Aa~~v~~~~~~~~AAI-~s~ 141 (282)
+++. .+++|++ ++-+-+.-.. .-..+++.+++. .+..-+.+.+...+..++ ...+.+ .+.
T Consensus 115 V~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~~~~~~~~Al~~g~-vd~~~~~~p~ 193 (275)
T 1sw5_A 115 VRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNKQ-VDVIPAYTTD 193 (275)
T ss_dssp EEHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTTS-CSEEEEETTC
T ss_pred EeHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCCCHHHHHHHHHcCC-CeEEEEeCCC
Confidence 7642 2334442 2222232111 112256665542 222234444455555443 344444 344
Q ss_pred hhHHHcCCceeecc
Q 048784 142 SAAAIYGLNILAED 155 (282)
Q Consensus 142 ~Aa~~ygL~vl~~~ 155 (282)
.....|+|.+|..+
T Consensus 194 ~~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 194 SRVDLFNLKILEDD 207 (275)
T ss_dssp HHHHHTTEEECBCT
T ss_pred cchhcCCeEEccCC
Confidence 44456899988754
No 146
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=30.81 E-value=71 Score=23.70 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=27.7
Q ss_pred EEEEEeecCCCcHHHHHHHHHHHhhcCceEEEccc
Q 048784 240 LFYVDFEASMADQKAQNALRHLKEFATFLRVLGSY 274 (282)
Q Consensus 240 ~F~vd~~g~~~~~~~~~al~~l~~~~~~v~~LGsY 274 (282)
.++|++.|. +.+++++++-|++....+.++|.-
T Consensus 66 ~L~v~l~G~--~~~~~~ai~~L~~~~v~vEvl~~~ 98 (106)
T 3dhx_A 66 IMLTEMHGT--QQDTQAAIAWLQEHHVKVEVLGYV 98 (106)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEeCC--HHHHHHHHHHHHHCCCEEEEeeee
Confidence 577899984 568899999999999999999853
No 147
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=30.11 E-value=32 Score=23.89 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=43.5
Q ss_pred EEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccCC-CCceEEEEEee
Q 048784 93 VLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDC-DNVTRFLMLAR 171 (282)
Q Consensus 93 V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~-~N~TRF~vl~~ 171 (282)
|-.++....+.+..|.+.+.....+.+..+|.+.+.+.. ....|.........|+.++.. +.... ...+.+++++.
T Consensus 7 v~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~-l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 7 LEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQH-LREHQADPHPPLVLFLG 83 (119)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHH-HHHTCCCSSCCCEEEES
T ss_pred EeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHH-HHhccccCCCCEEEEeC
Confidence 334677778888889887887777777777777776652 334443322222233333332 22222 24456666665
Q ss_pred C
Q 048784 172 E 172 (282)
Q Consensus 172 ~ 172 (282)
.
T Consensus 84 ~ 84 (119)
T 2j48_A 84 E 84 (119)
T ss_dssp S
T ss_pred C
Confidence 4
No 148
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=29.37 E-value=62 Score=23.52 Aligned_cols=78 Identities=6% Similarity=0.024 Sum_probs=46.6
Q ss_pred EEEechHHHHHHHHHHHh-cCCe-EEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccC-CCCceEEEE
Q 048784 92 RVLSHPQALAQCENTLTK-LGLV-REAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDD-CDNVTRFLM 168 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~-~~~~-~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~-~~N~TRF~v 168 (282)
-|=.++......+.+|.+ .+.. ...+.+..+|.+.+.+.. ....|.........|+.++.. |... ....+++++
T Consensus 13 ivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~ 89 (143)
T 3cnb_A 13 IIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHR-IKSTPATANIIVIA 89 (143)
T ss_dssp EECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHH-HHTSTTTTTSEEEE
T ss_pred EEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHH-HHhCccccCCcEEE
Confidence 344578888889999998 6887 667778778877776642 334443332223344444432 3322 234567777
Q ss_pred EeeC
Q 048784 169 LARE 172 (282)
Q Consensus 169 l~~~ 172 (282)
++..
T Consensus 90 ~s~~ 93 (143)
T 3cnb_A 90 MTGA 93 (143)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7654
No 149
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=28.70 E-value=89 Score=30.64 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=30.4
Q ss_pred EEEEEE-EcCCCccHHHHHHHHHHHCCceeeeeeeeeCC
Q 048784 183 KTSIVF-SLEEGPGVLFKALAVFALRQINLTKIESRPLR 220 (282)
Q Consensus 183 ktsi~~-~~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~ 220 (282)
.+.|.+ .++++||...++++.++++|||.-.|..-+..
T Consensus 444 ~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~ 482 (600)
T 3l76_A 444 QAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRC 482 (600)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccc
Confidence 344444 56899999999999999999999888765544
No 150
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=28.53 E-value=2.9e+02 Score=24.01 Aligned_cols=164 Identities=7% Similarity=-0.030 Sum_probs=88.5
Q ss_pred CCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHcCCCCeEEEeeeecccc-----------------
Q 048784 2 VRGAYSESAAEKAY--------PNCEAVPCEQ-----FDTAFEAVERWLVDRAVLPIENSLGG----------------- 51 (282)
Q Consensus 2 P~GTfS~~Aa~~~~--------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiENS~~G----------------- 51 (282)
|+|+..+.++..+. +..++..+++ -.+++++|..|.+|.+++..-+ +.|
T Consensus 12 ~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~-~~~~~P~~~~~~lPfl~~~~ 90 (312)
T 2xwv_A 12 GTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESAR-FQLFYPEAAVFALPYVISNY 90 (312)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGG-GGGTSGGGGGGGSTTTSCSH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchh-hhhhccchhhhcCCcccCCH
Confidence 56777777776542 2344444544 4899999999999999876321 111
Q ss_pred ----------ceec-ccccc-ccCCeEEEEEEEEeeeeeeeecCCCCCCCcc--EEEechHHHHHHHHHHHhcCCeEEEe
Q 048784 52 ----------SIHR-NYDLL-LRHRLHIVGEVKFAVRHCLLANPGVKVEDLK--RVLSHPQALAQCENTLTKLGLVREAV 117 (282)
Q Consensus 52 ----------~V~~-t~d~L-~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I~--~V~SHpqal~QC~~fl~~~~~~~~~~ 117 (282)
.+.. .++-+ .+.++.+.+-.....++....++=.+++|++ +|..-+.. -...+++..++..++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~alGa~pv~m 168 (312)
T 2xwv_A 91 NVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRVPNAA--TNLAYAKYVGASPTPM 168 (312)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEESSCCCSGGGGTTCEEEECSCH--HHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCceeeecCCCcCCHHHhCCCEEEeCCCH--HHHHHHHHcCCeeeec
Confidence 1100 01111 1246777777666666543323334566766 66654432 2357788888876654
Q ss_pred cCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccCCCCce-EEEEEee
Q 048784 118 DDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVT-RFLMLAR 171 (282)
Q Consensus 118 ~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~~N~T-RF~vl~~ 171 (282)
.- ++....+..+ .-+|+..+.......++.-..+.+.......+ -++++++
T Consensus 169 ~~-~Evy~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 169 AF-SEVYLALQTN--AVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp CG-GGHHHHHHTT--SSSEEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred CH-HHHHHHHHcC--CcceEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 32 3333334433 34566666555544555444444444333433 3444444
No 151
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=28.30 E-value=41 Score=29.62 Aligned_cols=42 Identities=19% Similarity=0.026 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAYP-------NCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~-------~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
|.||-++.....++. +.++++. +..+++.++.+|++|.++++
T Consensus 125 ~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 125 HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 468888777665532 2456655 68899999999999998875
No 152
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=27.62 E-value=2.2e+02 Score=24.72 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=39.1
Q ss_pred ceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceecccccccc------CCeEEEEEEEEeeeeeeeecCCC
Q 048784 19 EAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLR------HRLHIVGEVKFAVRHCLLANPGV 85 (282)
Q Consensus 19 ~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~------~~l~I~~E~~l~I~~~L~a~~~~ 85 (282)
+.+...+..+++.+|.+|++|.+++... ++..+.+ .++.+.++...--.+.++++++.
T Consensus 150 ~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 150 KRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp SEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred cccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCC
Confidence 4456688999999999999999998632 2222211 35777776544445677777764
No 153
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=27.53 E-value=1.5e+02 Score=21.36 Aligned_cols=109 Identities=6% Similarity=-0.032 Sum_probs=59.1
Q ss_pred echHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccCC-CCceEEEEEeeCC
Q 048784 95 SHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDC-DNVTRFLMLAREP 173 (282)
Q Consensus 95 SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~-~N~TRF~vl~~~~ 173 (282)
.++......+.+|.+. .....+.+..+|.+.+.+. +....|.........|+.++.. +.... ...+.+++++...
T Consensus 11 d~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 11 QQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLK-LKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp SCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC------CHHHH-HHTSTTCTTCCEEEEECC-
T ss_pred CCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHH-HHcCcccCCCCEEEEecCC
Confidence 4777778888888876 6666777888888887765 2345555444445667776654 33332 2567888887653
Q ss_pred CCCC--CCCCcEEEEEEEcCCCccHHHHHHHHHHHC
Q 048784 174 IIPG--TDRPFKTSIVFSLEEGPGVLFKALAVFALR 207 (282)
Q Consensus 174 ~~~~--~~~~~ktsi~~~~~~~pG~L~~~L~~F~~~ 207 (282)
.... .....-..=++.-|-.+..|...|...-.+
T Consensus 87 ~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 87 HKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp ---CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 2111 000111222333355677788777765443
No 154
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=27.28 E-value=54 Score=28.01 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=32.9
Q ss_pred CCCCcHHHHHHHhhCC--CC--c-e--eecCCHHHHHHHHHcCCCCeEEEe
Q 048784 1 GVRGAYSESAAEKAYP--NC--E-A--VPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 1 GP~GTfS~~Aa~~~~~--~~--~-~--~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
|+.||-+|..+..++. +. + + +++.+..+++.++.+|++|.++..
T Consensus 137 ~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 137 GDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEE
T ss_pred CCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEc
Confidence 4678988887766542 12 1 2 467789999999999999999864
No 155
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.70 E-value=33 Score=25.37 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=46.8
Q ss_pred EEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccC-CCCceEEEEEee
Q 048784 93 VLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDD-CDNVTRFLMLAR 171 (282)
Q Consensus 93 V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~-~~N~TRF~vl~~ 171 (282)
|=.+|......+.+|.+.+.....+.|..+|.+.+.+. .....|....-....|+.++.. |... ....+.+++++.
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~-lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 10 VDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGIDGYTLCKR-VRQHPLTKTLPILMLTA 86 (136)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHH-HHHSGGGTTCCEEEEEC
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHH-HHcCCCcCCccEEEEec
Confidence 33477788888889988888877788888888777664 2344554333233445555443 3322 233466777765
Q ss_pred C
Q 048784 172 E 172 (282)
Q Consensus 172 ~ 172 (282)
.
T Consensus 87 ~ 87 (136)
T 3t6k_A 87 Q 87 (136)
T ss_dssp T
T ss_pred C
Confidence 4
No 156
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=26.63 E-value=71 Score=23.13 Aligned_cols=79 Identities=11% Similarity=0.146 Sum_probs=47.0
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccCCCCceEEEEEee
Q 048784 92 RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLMLAR 171 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~~N~TRF~vl~~ 171 (282)
-|=.++......+.+|.+.+.....+.+..+|...+.+.. +....|.........|+.++.. |.......+++++++.
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~-l~~~~~~~~~ii~~s~ 89 (136)
T 3hdv_A 12 VVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRT-IRASERAALSIIVVSG 89 (136)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHH-HHTSTTTTCEEEEEES
T ss_pred EECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHH-HHhcCCCCCCEEEEeC
Confidence 3445788888889999988888777888888877776642 2344554433233344444432 3322233456666654
Q ss_pred C
Q 048784 172 E 172 (282)
Q Consensus 172 ~ 172 (282)
.
T Consensus 90 ~ 90 (136)
T 3hdv_A 90 D 90 (136)
T ss_dssp S
T ss_pred C
Confidence 3
No 157
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=26.35 E-value=2.7e+02 Score=23.36 Aligned_cols=117 Identities=12% Similarity=0.092 Sum_probs=59.7
Q ss_pred ceeecCCHHHHHHHHHcCCCCeEEEeeeecc---ccceeccccccccCCeEEEEEEEEeeeeeeeecCCC---CCCCcc-
Q 048784 19 EAVPCEQFDTAFEAVERWLVDRAVLPIENSL---GGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGV---KVEDLK- 91 (282)
Q Consensus 19 ~~~~~~s~~~v~~av~~g~~d~gVvPiENS~---~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I~- 91 (282)
++.+..+-.+.+++|.+|++|++++...... .|.....++-....++..++.+. .-...|+++++. +++|++
T Consensus 53 ~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~lvv~~~~~i~sl~dL~g 131 (314)
T 1us5_A 53 NARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALY-PEVVHVVARKDAGIRTVADLKG 131 (314)
T ss_dssp EEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEE-EEEEEEEEETTSSCSSGGGGTT
T ss_pred EEEecCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcC-cceEEEEEECCCCCCcHHHhCC
Confidence 4445567889999999999999887532211 11100011100113455544332 233566665543 344443
Q ss_pred -EEEe-chH--HHHHHHHHHHhcCCe-----EEEecCHHHHHHHhhhcCCCCeEEe
Q 048784 92 -RVLS-HPQ--ALAQCENTLTKLGLV-----REAVDDTAGAAKYVSFEQLKDAGAV 138 (282)
Q Consensus 92 -~V~S-Hpq--al~QC~~fl~~~~~~-----~~~~~sTa~Aa~~v~~~~~~~~AAI 138 (282)
+|.. .+- .......++++.++. .....+.+++...+..++ -.+++
T Consensus 132 ~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~--vda~~ 185 (314)
T 1us5_A 132 KRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKR--ADALF 185 (314)
T ss_dssp SEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTS--CSEEE
T ss_pred CEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCC--ccEEE
Confidence 4433 331 122456677766553 124456677777776552 34444
No 158
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=25.92 E-value=63 Score=26.00 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=18.8
Q ss_pred HHHHHHHHCCceeeeeeeeeCCC
Q 048784 199 KALAVFALRQINLTKIESRPLRN 221 (282)
Q Consensus 199 ~~L~~F~~~~INlt~IeSRP~~~ 221 (282)
.++.+.+++||+++.-.||+...
T Consensus 58 ~a~~~l~~~Gid~~~~~ar~l~~ 80 (158)
T 3rof_A 58 GTQKILNKHNIPFDGMISELFEA 80 (158)
T ss_dssp HHHHHHHHTTCCCTTCCCCBCCT
T ss_pred HHHHHHHHcCCCcCCCcceECCh
Confidence 56677789999999888888765
No 159
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=25.42 E-value=1.1e+02 Score=28.37 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=37.7
Q ss_pred cCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHhh
Q 048784 190 LEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEF 264 (282)
Q Consensus 190 ~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~ 264 (282)
.++.||.+.++++.+++.|||+..|-+. .. .-.|.|+-+ ...+|++.|.+.
T Consensus 354 m~~~~Gv~a~~f~aL~~~~InI~~is~S--e~----------------~is~vV~~~------d~~~Av~~Lh~~ 404 (421)
T 3ab4_A 354 MKSHPGVTAEFMEALRDVNVNIELISTS--EI----------------RISVLIRED------DLDAAARALHEQ 404 (421)
T ss_dssp GTSCTTHHHHHHHHHHHTTCCCCEEEEE--TT----------------EEEEEEEGG------GHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHCCCCEEEEEcC--CC----------------eEEEEEeHH------HHHHHHHHHHHH
Confidence 4688999999999999999999988532 11 457777753 345677777654
No 160
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=24.86 E-value=33 Score=29.22 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=21.3
Q ss_pred eeec--CCHHHHHHHHHcCCCCeEEEe
Q 048784 20 AVPC--EQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 20 ~~~~--~s~~~v~~av~~g~~d~gVvP 44 (282)
++.+ .+.++++++|.+|++|+.+..
T Consensus 187 i~~~~~~~~~~~l~~l~~G~vDa~i~d 213 (284)
T 2a5s_A 187 MTRFNQRGVEDALVSLKTGKLDAFIYD 213 (284)
T ss_dssp HGGGCCSSHHHHHHHHHTTSCSEEEEE
T ss_pred HHhccCCCHHHHHHHHHcCCeeEEEEc
Confidence 4555 899999999999999988864
No 161
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=23.94 E-value=2.6e+02 Score=21.87 Aligned_cols=120 Identities=10% Similarity=0.062 Sum_probs=58.7
Q ss_pred hCCCCceee-cCCHHHHHHHHHcCCCCeEEEeeeec-cccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCCCCc-
Q 048784 14 AYPNCEAVP-CEQFDTAFEAVERWLVDRAVLPIENS-LGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDL- 90 (282)
Q Consensus 14 ~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS-~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I- 90 (282)
.+|+.++.. ..+-.++.+++.+|++|+|++.-... ..+... ..|.+.++ -+.++-.|-|......+++++
T Consensus 39 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~l~~---~~l~~~~~----~~v~~~~hpla~~~~i~~~dL~ 111 (228)
T 2fyi_A 39 LFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVA---FPWFRWHH----SLLVPHDHPLTQISPLTLESIA 111 (228)
T ss_dssp HCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTTCTTEEE---EEEEEECE----EEEEETTCGGGTSSSCCHHHHT
T ss_pred HCCCcEEEEEeCCHHHHHHHHHcCCccEEEEecccCCCCCceE---EEeeecce----EEEecCCCCccccCccCHHHHc
Confidence 357765543 34678999999999999999742100 011100 11111121 123344454443322333332
Q ss_pred --cEEEec-hHH-HHHHHHHHHhcCC--e-EEEecCHHHHHHHhhhcCCCCeEEecChhh
Q 048784 91 --KRVLSH-PQA-LAQCENTLTKLGL--V-REAVDDTAGAAKYVSFEQLKDAGAVASSSA 143 (282)
Q Consensus 91 --~~V~SH-pqa-l~QC~~fl~~~~~--~-~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~A 143 (282)
.-|... ... ..+...++.+.+. . ...++|......+|+.+ .+. |+.+..+
T Consensus 112 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G--~Gi-a~lp~~~ 168 (228)
T 2fyi_A 112 KWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALG--LGI-GLVAEQS 168 (228)
T ss_dssp TSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT--SCE-EEEEGGG
T ss_pred CCCeEEecCCccHHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhC--CCE-EEeehHh
Confidence 333322 111 2344556666543 2 34566777677777765 344 5545443
No 162
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=22.96 E-value=1.2e+02 Score=21.98 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=26.1
Q ss_pred EEEEEeecCCCcHHHHHHHHHHHhhcCceEEEc
Q 048784 240 LFYVDFEASMADQKAQNALRHLKEFATFLRVLG 272 (282)
Q Consensus 240 ~F~vd~~g~~~~~~~~~al~~l~~~~~~v~~LG 272 (282)
.++|++.|. +..++++++-|++....+.++|
T Consensus 68 ~L~v~l~G~--~~~~~~ai~~L~~~~v~vEvlg 98 (101)
T 2qrr_A 68 MMVAELFGN--EQDDSAAIEYLRENNVKVEVLG 98 (101)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEeCC--HHHHHHHHHHHHHcCCEEEEec
Confidence 578899884 4678999999999988888886
No 163
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=22.77 E-value=2.8e+02 Score=21.80 Aligned_cols=120 Identities=14% Similarity=-0.014 Sum_probs=57.6
Q ss_pred hCCCCcee-ecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCCCCc--
Q 048784 14 AYPNCEAV-PCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDL-- 90 (282)
Q Consensus 14 ~~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I-- 90 (282)
.+|+.++. -..+-.++.+++.+|++|+|++.......|.. ...|.+.++.+ .++-.|-|.. ...+++++
T Consensus 44 ~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~---~~~l~~~~~~~----v~~~~hpl~~-~~i~~~dL~~ 115 (241)
T 3oxn_A 44 EAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLR---SEILGRVGVLC----LLSKQHPLAN-QEMSLDDYLS 115 (241)
T ss_dssp HCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCTTEE---EEEEECCCEEE----EEETTSGGGG-SCCCHHHHHT
T ss_pred HCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCCCccce---eEEeecccEEE----EEeCCCCccc-CCCCHHHHhc
Confidence 35776543 33456688999999999999985321111111 01122222221 2233333333 22233333
Q ss_pred -cEEEech--HHHHHHHHHHHhcCCe---EEEecCHHHHHHHhhhcCCCCeEEecChhhHH
Q 048784 91 -KRVLSHP--QALAQCENTLTKLGLV---REAVDDTAGAAKYVSFEQLKDAGAVASSSAAA 145 (282)
Q Consensus 91 -~~V~SHp--qal~QC~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~ 145 (282)
.-|.-.+ ....+...++.+. .. ...+.|...+..+|+.+ . ..||.+...+.
T Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g--~-giailp~~~~~ 172 (241)
T 3oxn_A 116 HPHAMIAISDGVKALIEQALIDK-PQRKMVLRAYHLEAALAIVDTL--P-IIITVPADLAY 172 (241)
T ss_dssp SEEEECSCCHHHHHHHHHHSTTS-CCCEEEEECSSTHHHHHHC--C--C-CEEEEEHHHHH
T ss_pred CCeEEEecCCCccchhHHHHHhh-ccceEEEECCcHHHHHHHHhCC--C-eEEEcHHHHHH
Confidence 2232221 1233344455554 32 23566777777777765 3 45666666555
No 164
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=22.36 E-value=57 Score=23.96 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=45.9
Q ss_pred EEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccC-CCCceEEEEEee
Q 048784 93 VLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDD-CDNVTRFLMLAR 171 (282)
Q Consensus 93 V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~-~~N~TRF~vl~~ 171 (282)
|=.+|......+.+|.+.+.....+.|..+|.+.+... .....|....-....|+.++.. |... ....+.+++++.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 9 VDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMDGWETLER-IKTDPATRDIPVLMLTA 85 (138)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHH-HHHSTTTTTSCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHH-HHcCcccCCCCEEEEEC
Confidence 33477778888888988777777777877887777654 2344544322223344444432 3322 234577777765
Q ss_pred C
Q 048784 172 E 172 (282)
Q Consensus 172 ~ 172 (282)
.
T Consensus 86 ~ 86 (138)
T 3c3m_A 86 K 86 (138)
T ss_dssp S
T ss_pred C
Confidence 4
No 165
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=22.29 E-value=68 Score=27.59 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=62.6
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecCCCCCCCccEEEec-
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSH- 96 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~~~~l~~I~~V~SH- 96 (282)
.++..+.+.+++.+++.+|++|++++|..-.... ++ ...++.+++-... =...|+++.. |.. |+|...
T Consensus 35 v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-----~~--~g~~~~i~~~~~~-g~~~lv~~~~--LkG-K~Iav~~ 103 (283)
T 3hn0_A 35 VQVKVVDSPDLAQALLIKQETDIAVLPMINAANL-----YN--KGIKIKLAGCPIW-GTLYLVEKTP--LKE-PALYVFG 103 (283)
T ss_dssp EEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHHH-----HH--TTCSCEEEEEEEC-CCCEEEECSS--CCS-CCEECSS
T ss_pred EEEEEeCCHHHHHHHHHCCCCCEEEEcHHHHHHH-----HH--CCCCeEEEEEecc-cEEEEEecCC--CCC-CEEEecC
Confidence 4678899999999999999999999875421110 00 0113444432221 1123444432 332 466633
Q ss_pred h--HHHHHHHHHHHhcCC--eEEEec-CHHHHHHHhhhcCCCCeEEecChh
Q 048784 97 P--QALAQCENTLTKLGL--VREAVD-DTAGAAKYVSFEQLKDAGAVASSS 142 (282)
Q Consensus 97 p--qal~QC~~fl~~~~~--~~~~~~-sTa~Aa~~v~~~~~~~~AAI~s~~ 142 (282)
+ .+....+.+|++.++ +.+... +.+++...+..++ -+++.+..+.
T Consensus 104 ~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~-vDa~~~~eP~ 153 (283)
T 3hn0_A 104 NGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGK-VNRAVLGEPF 153 (283)
T ss_dssp TTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTS-CSEEEECTTH
T ss_pred CCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCC-CCEEEecccH
Confidence 2 234456777887754 344444 5677777676653 3344444333
No 166
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=22.24 E-value=1.2e+02 Score=22.08 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=26.0
Q ss_pred EEEEEeecCCCcHHHHHHHHHHHhhcCceEEEc
Q 048784 240 LFYVDFEASMADQKAQNALRHLKEFATFLRVLG 272 (282)
Q Consensus 240 ~F~vd~~g~~~~~~~~~al~~l~~~~~~v~~LG 272 (282)
.+.|++.|. ++..++++++-|++....|.++|
T Consensus 65 ~L~v~l~G~-~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 65 FLVLHIPYI-SSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEEESCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEeCC-CHHHHHHHHHHHHHCCCEEEEec
Confidence 578889873 34678999999999988888886
No 167
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=22.23 E-value=2.9e+02 Score=24.13 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=62.2
Q ss_pred CceeecCCHHHHHHHHHcCCCCeEEEeeeec---cccceeccccc-cccCCeEEEEEEEEeeeeeeeecCCC---CCCCc
Q 048784 18 CEAVPCEQFDTAFEAVERWLVDRAVLPIENS---LGGSIHRNYDL-LLRHRLHIVGEVKFAVRHCLLANPGV---KVEDL 90 (282)
Q Consensus 18 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS---~~G~V~~t~d~-L~~~~l~I~~E~~l~I~~~L~a~~~~---~l~~I 90 (282)
.++.+...-.+.+.++.+|++|++++..... ..|.. .++- -...++..++-+.- -...|+++++. +++|+
T Consensus 68 v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~--~f~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~DL 144 (327)
T 4ddd_A 68 CSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLG--FYEKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDDI 144 (327)
T ss_dssp EEEECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCG--GGTTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGGG
T ss_pred EEEEecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcC--cccccCCCcchhehhccCC-ccEEEEEECCCCCCCHHHh
Confidence 3556667788999999999999999754211 11110 0110 01135666665543 44566776653 33444
Q ss_pred c--EEEe-chH--HHHHHHHHHHhcCC-----eEEEecCHHHHHHHhhhcC
Q 048784 91 K--RVLS-HPQ--ALAQCENTLTKLGL-----VREAVDDTAGAAKYVSFEQ 131 (282)
Q Consensus 91 ~--~V~S-Hpq--al~QC~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~ 131 (282)
+ +|.- .+- .....+.++++.++ ..++..+.+++...+..++
T Consensus 145 ~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~ 195 (327)
T 4ddd_A 145 KGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNK 195 (327)
T ss_dssp TTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTS
T ss_pred CCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCC
Confidence 3 4432 221 12234566766655 2456678888888887663
No 168
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=22.11 E-value=77 Score=30.23 Aligned_cols=39 Identities=21% Similarity=0.536 Sum_probs=28.8
Q ss_pred eeEEEEEEeecCCCcH--HH----HHHHHHHHhhcCceEE-Ecccc
Q 048784 237 FDYLFYVDFEASMADQ--KA----QNALRHLKEFATFLRV-LGSYP 275 (282)
Q Consensus 237 ~~y~F~vd~~g~~~~~--~~----~~al~~l~~~~~~v~~-LGsY~ 275 (282)
-+.+|.+|+.+++.|. ++ .++.++|++.+..+|+ +|+|-
T Consensus 123 VDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFv 168 (454)
T 3vi3_B 123 IDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFV 168 (454)
T ss_dssp EEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEEC
T ss_pred eeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEe
Confidence 4889999999998764 23 3455667777888877 78874
No 169
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.97 E-value=51 Score=24.89 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=48.3
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhHHHcCCceeecccccCC-CCceEEEEEe
Q 048784 92 RVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDC-DNVTRFLMLA 170 (282)
Q Consensus 92 ~V~SHpqal~QC~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa~~ygL~vl~~~I~d~~-~N~TRF~vl~ 170 (282)
.|=.+|......+.+|.+.+..+..+.|..+|.+.+.+. +....|.........|+.++.. |...+ ...+.+++++
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~-lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 12 IVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRW-LKGQPDLRTIPVILLT 88 (154)
T ss_dssp EECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHH-HHHSTTTTTSCEEEEE
T ss_pred EEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHH-HHhCCCcCCCCEEEEE
Confidence 444578888889999998888777777888887777654 2344554333233445554432 33322 2456777777
Q ss_pred eC
Q 048784 171 RE 172 (282)
Q Consensus 171 ~~ 172 (282)
..
T Consensus 89 ~~ 90 (154)
T 3gt7_A 89 IL 90 (154)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 170
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=21.93 E-value=55 Score=27.92 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=45.0
Q ss_pred CCcHHHHHHHhhCCC----CceeecCCHHHHHHHHHc--CCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeee
Q 048784 3 RGAYSESAAEKAYPN----CEAVPCEQFDTAFEAVER--WLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVR 76 (282)
Q Consensus 3 ~GTfS~~Aa~~~~~~----~~~~~~~s~~~v~~av~~--g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~ 76 (282)
.|+..+...++.+++ .+.+.+.+..+++++|.+ |++|..+..-. ...-.+. .....++.++++..-...
T Consensus 177 ~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~~-~~~~~~~----~~~~~~l~~~~~~~~~~~ 251 (294)
T 2rc8_A 177 RESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKA-LLDYEVS----IDADCKLLTVGKPFAIEG 251 (294)
T ss_dssp TTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHH-HHHHHHH----TCSSSCEEECSCCEEEEE
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEecHH-HHHHHHh----hCCCCCEEEcCCcccccc
Confidence 577777666665543 233568899999999999 99998876421 1111110 001124666665444455
Q ss_pred eeeeecCC
Q 048784 77 HCLLANPG 84 (282)
Q Consensus 77 ~~L~a~~~ 84 (282)
++++.+++
T Consensus 252 ~~ia~~k~ 259 (294)
T 2rc8_A 252 YGIGLPPN 259 (294)
T ss_dssp ECCEECTT
T ss_pred eEEEecCC
Confidence 56666654
No 171
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=21.88 E-value=57 Score=31.57 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=29.0
Q ss_pred eeEEEEEEeecCCCcH--HH----HHHHHHHHhhcCceEE-Ecccc
Q 048784 237 FDYLFYVDFEASMADQ--KA----QNALRHLKEFATFLRV-LGSYP 275 (282)
Q Consensus 237 ~~y~F~vd~~g~~~~~--~~----~~al~~l~~~~~~v~~-LGsY~ 275 (282)
-+.+|.+|+.+++.|. ++ .++.++|++.+..+|+ +|+|-
T Consensus 133 VDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFv 178 (503)
T 3v4v_B 133 VDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFV 178 (503)
T ss_dssp EEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEEC
T ss_pred eeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeec
Confidence 4889999999998764 23 3355667777888887 88884
No 172
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=21.52 E-value=79 Score=30.32 Aligned_cols=39 Identities=21% Similarity=0.511 Sum_probs=28.9
Q ss_pred eeEEEEEEeecCCCcH--H----HHHHHHHHHhhcCceEE-Ecccc
Q 048784 237 FDYLFYVDFEASMADQ--K----AQNALRHLKEFATFLRV-LGSYP 275 (282)
Q Consensus 237 ~~y~F~vd~~g~~~~~--~----~~~al~~l~~~~~~v~~-LGsY~ 275 (282)
-+.+|.+|+.+++.|. + ..++.++|++.+..+|+ +|+|-
T Consensus 112 vDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFv 157 (472)
T 3t3p_B 112 VDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFV 157 (472)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEEC
T ss_pred ceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEee
Confidence 4889999999998764 2 24456667777788877 78874
No 173
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.42 E-value=49 Score=24.30 Aligned_cols=79 Identities=6% Similarity=-0.069 Sum_probs=49.3
Q ss_pred EEechHHHHHHHHHHHh-cCCeEEEecCHHHHHHHhhhcCCCCeEEecChhhH-HHcCCceeecccccCCCCceEEEEEe
Q 048784 93 VLSHPQALAQCENTLTK-LGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAA-AIYGLNILAEDIQDDCDNVTRFLMLA 170 (282)
Q Consensus 93 V~SHpqal~QC~~fl~~-~~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~~Aa-~~ygL~vl~~~I~d~~~N~TRF~vl~ 170 (282)
|=.++......+.+|.+ .+..+..+.|..+|.+.+.+.. .....|...... ...|+.++..=-++.....+++++++
T Consensus 10 vdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls 88 (140)
T 3lua_A 10 IDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLD-SITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIAT 88 (140)
T ss_dssp ECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCC-CCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEe
Confidence 34577888888999998 6888777788888877776612 344555544434 45566555432222233456777776
Q ss_pred eC
Q 048784 171 RE 172 (282)
Q Consensus 171 ~~ 172 (282)
..
T Consensus 89 ~~ 90 (140)
T 3lua_A 89 KS 90 (140)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 174
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=21.04 E-value=1.2e+02 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=26.1
Q ss_pred EEEEEeecCCCcHHHHHHHHHHHhhcCceEEEc
Q 048784 240 LFYVDFEASMADQKAQNALRHLKEFATFLRVLG 272 (282)
Q Consensus 240 ~F~vd~~g~~~~~~~~~al~~l~~~~~~v~~LG 272 (282)
.++|++.|. +..++++++-|++....+.++|
T Consensus 68 ~L~v~l~G~--~~~~~~ai~~L~~~~v~vEvlg 98 (100)
T 2qsw_A 68 SLYIQLLGE--EQNILAAIEGLRKLRVETEVIG 98 (100)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHTTCEEEESS
T ss_pred EEEEEEECC--HHHHHHHHHHHHHcCCEEEEcc
Confidence 578899884 4678999999999988888886
No 175
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=20.77 E-value=2.8e+02 Score=21.07 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=56.0
Q ss_pred hCCCCcee-ecCCHHHHHHHHHcCCCCeEEEeeeeccccceeccccccccCCeEEEEEEEEeeeeeeeecC-CCCCCCc-
Q 048784 14 AYPNCEAV-PCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANP-GVKVEDL- 90 (282)
Q Consensus 14 ~~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~a~~-~~~l~~I- 90 (282)
.+|+.++. -..+-.++.+++.+|++|+|++.-.....+... ..|.+.++. +.++-.|-|.... ..+++++
T Consensus 30 ~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~----~v~~~~hpl~~~~~~~~~~~l~ 102 (209)
T 2ql3_A 30 EYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQT---VPLMTREPM----VVLGAEHPLAGVDGPVRLADLA 102 (209)
T ss_dssp HCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTEEE---EEEEEECCE----EEEETTCGGGGCCSCBCGGGGT
T ss_pred HCCCceEEEEECcHHHHHHHHHcCCccEEEEecCCCCCCceE---EEeecCceE----EEEeCCCccccCCCCcCHHHHh
Confidence 45766543 345677899999999999999853211111110 112222222 2233344444332 2344444
Q ss_pred --cEEEechHHH-HHHHHHHHhcCC--e-EEEecCHHHHHHHhhhc
Q 048784 91 --KRVLSHPQAL-AQCENTLTKLGL--V-REAVDDTAGAAKYVSFE 130 (282)
Q Consensus 91 --~~V~SHpqal-~QC~~fl~~~~~--~-~~~~~sTa~Aa~~v~~~ 130 (282)
.-|...+... .+..+++.+.+. . ...++|...+..+|+.+
T Consensus 103 ~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g 148 (209)
T 2ql3_A 103 EHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRG 148 (209)
T ss_dssp TSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHT
T ss_pred CCCEEeeCChhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcC
Confidence 3343222222 345566666543 2 34566777777777765
No 176
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=20.20 E-value=1e+02 Score=27.98 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=26.5
Q ss_pred CCCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 16 PNCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 16 ~~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+..+.+.-.+..++++++.+|++|.+.++
T Consensus 33 ~~vecv~~~~~~~ci~aI~~g~AD~~~ld 61 (334)
T 1h45_A 33 PPVSCIKRDSPIQCIQAIAENRADAVTLD 61 (334)
T ss_dssp CCEEEEECSSHHHHHHHHHTTSCCBEEEC
T ss_pred CceEEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 46788999999999999999999999985
No 177
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=20.16 E-value=1.4e+02 Score=28.21 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=36.5
Q ss_pred cCCCccHHHHHHHHHHHCCceeeeeeeeeCCCCCCCCCCCCCCCCcceeEEEEEEeecCCCcHHHHHHHHHHHhh
Q 048784 190 LEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEF 264 (282)
Q Consensus 190 ~~~~pG~L~~~L~~F~~~~INlt~IeSRP~~~~~~~~~~~~~g~~~~~~y~F~vd~~g~~~~~~~~~al~~l~~~ 264 (282)
.++.||.+.++++.+++.|||+..|---.+ . -.-.|.|+-+ ...+|++.|.+.
T Consensus 414 m~~~~Gvaak~f~aL~~~~InI~misqgtS-e---------------~~Is~vV~~~------d~~~Av~aLh~~ 466 (473)
T 3c1m_A 414 MRGAKGIAGKIFTAVSESGANIKMIAQGSS-E---------------VNISFVIDEK------DLLNCVRKLHEK 466 (473)
T ss_dssp TTTCTTHHHHHHHHHHHHTCCCCEEEESSC-S---------------SEEEEEEEGG------GHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCCCEEEEecCCC-C---------------ceEEEEEcHH------HHHHHHHHHHHH
Confidence 367899999999999999999966642211 1 1457777653 345677776644
No 178
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=20.01 E-value=92 Score=26.41 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHcCCCCeEEEe
Q 048784 2 VRGAYSESAAEKAYP-------NCEAVPCEQFDTAFEAVERWLVDRAVLP 44 (282)
Q Consensus 2 P~GTfS~~Aa~~~~~-------~~~~~~~~s~~~v~~av~~g~~d~gVvP 44 (282)
+.||.++.....++. +.+++ ..+..+++.++.+|++|.++++
T Consensus 111 ~~gs~~~~~l~~~l~~~Gl~~~~v~~~-~~~~~~~~~al~~G~vDa~~~~ 159 (308)
T 2x26_A 111 QKGSSSHNLLLRALRQAGLKFTDIQPT-YLTPADARAAFQQGNVDAWAIW 159 (308)
T ss_dssp CTTSHHHHHHHHHHHHTTCCGGGSEEE-ECCHHHHHHHHHTTSSSEEEEE
T ss_pred eCCCcHHHHHHHHHHHcCCCHHHeEEE-ecChHHHHHHHHcCCCCEEEec
Confidence 467877766554432 12333 3468999999999999998874
Done!