RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 048784
         (282 letters)



>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL
           tepidum TLS, structural genomics, PSI-2, protein
           structure initiative; HET: PHE; 2.30A {Chlorobium
           tepidum tls}
          Length = 283

 Score =  393 bits (1011), Expect = e-139
 Identities = 135/284 (47%), Positives = 166/284 (58%), Gaps = 24/284 (8%)

Query: 1   GVRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLL 60
           G  GAYSE AA +     E +PCE FD  F AV     D AV+PIENSLGGSIH+NYDLL
Sbjct: 13  GEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLL 69

Query: 61  LRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAQCENTLTK-LGLVREAVDD 119
           LR  + I+ E    V HCLL  PG  VE   + +SHPQAL QC N       +  EA  D
Sbjct: 70  LRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYD 129

Query: 120 TAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLMLAREPIIPGTD 179
           TAG+AK V+  + K A A+AS  A  +YGL+IL E++ D+  N+TRF  +A E     + 
Sbjct: 130 TAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAHENNPDISH 189

Query: 180 RPF-------KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSG 232
                     KTSIVF+L    G LF+ALA FALR I+LTKIESRP R +          
Sbjct: 190 LKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA--------- 240

Query: 233 FGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPI 276
               F+YLFY DF     DQ   NAL +L+EFAT ++VLGSY +
Sbjct: 241 ----FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGV 280


>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
           midwest center for ST genomics, protein structure
           initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
           aurescens}
          Length = 313

 Score =  359 bits (924), Expect = e-126
 Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 20/282 (7%)

Query: 1   GVRGAYSESAAEKAY--PNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYD 58
           G +G ++E+A  +     +   +PC   +TA E V     D A++PIENS+ G +    D
Sbjct: 13  GPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLD 72

Query: 59  LLLR-HRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAQCENTLTKL--GLVRE 115
            +     L I+ E    +   L+A PGV++ D+KR+ +H  A AQC   + +        
Sbjct: 73  AIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYV 132

Query: 116 AVDDTAGAAKYVSFEQ-LKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLMLAREPI 174
               TA +A  +  +    +A   A   AA   GLN+LAEDI D+ D VTRF++++R   
Sbjct: 133 PGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGA 192

Query: 175 IPGTDRPFKTSIVFSL-EEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGF 233
           +P      KT++V  L E+ PG L + L  FA R +NL++IESRP               
Sbjct: 193 LPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTG------------- 239

Query: 234 GKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYP 275
                Y F +D +    D +  +AL  L   +   R LGSY 
Sbjct: 240 QYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYA 281


>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase
           (PDT), staphylococcus aureu aureus MU50, structural
           genomics, PSI-2; 2.30A {Staphylococcus aureus subsp}
           SCOP: c.94.1.1 d.58.18.3
          Length = 267

 Score =  356 bits (916), Expect = e-125
 Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 21/276 (7%)

Query: 1   GVRGAYSESAAEKAYPNCEA--VPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYD 58
           G +G +S  A  + +   EA   P        +AV        V+PIENS+ G+I+   D
Sbjct: 10  GPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVAD 69

Query: 59  LLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAQCENTLTKLGLVREAVD 118
            L +  +   GE++  +   L  N    + D+K+V S   A++Q  N + +     + VD
Sbjct: 70  ALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVD 129

Query: 119 DTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLMLAREPIIPGT 178
            T  +   +         A+A   +   YG   +   I+D   NVTRFL++  +      
Sbjct: 130 STIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ-QFDQ 184

Query: 179 DRPFKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFD 238
           +      ++  + + PG+L   L  FAL  INL+ IESRPL+ Q                
Sbjct: 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL-------------GM 231

Query: 239 YLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSY 274
           Y F+V  ++++     +  +  L+     + ++G++
Sbjct: 232 YRFFVQADSAITT-DIKKVIAILETLDFKVEMIGAF 266


>3luy_A Probable chorismate mutase; structural genomics, APC38059,
           3-phenylp PSI-2, protein structure initiative; HET: PPY;
           2.00A {Bifidobacterium adolescentis}
          Length = 329

 Score =  347 bits (892), Expect = e-120
 Identities = 61/300 (20%), Positives = 108/300 (36%), Gaps = 36/300 (12%)

Query: 1   GVRGAYSESAAEKAYP--------NCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGS 52
           G +G ++  AA  A            + +P +      +A +       ++  EN++ G 
Sbjct: 13  GPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHG-DGWGIVAWENNVEGY 71

Query: 53  IHRNYDLLLRHR-LHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAQCENTLTKLG 111
           +  N D L+  + L     V   V        G    + +   +HP  LAQC+  + +  
Sbjct: 72  VVPNLDALIDAKDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHR 131

Query: 112 LVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLMLAR 171
           L  +     A A + +         A   +    +Y +  +   IQD     T FL+L+ 
Sbjct: 132 LSTQPATSNAAACRDLI----PGEIAFGPAICGELYDITRIGTAIQDYQGAATDFLVLSP 187

Query: 172 EPIIPGTDRPF---------KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQ 222
              +                    +  L  GPGVL   L VF    +N+T   SRP++  
Sbjct: 188 RAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIK-- 245

Query: 223 PLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPIDTTIVP 282
                      G+   Y F V  +A+  +++ ++AL  + E   + + L  YP      P
Sbjct: 246 -----------GRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAVYPRREHPNP 294


>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
           hydroxylase, phosphorylation, intrasteric regulation,
           allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
           d.58.18.3 d.178.1.1 PDB: 2phm_A
          Length = 429

 Score = 91.7 bits (227), Expect = 3e-21
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 22/140 (15%)

Query: 143 AAAIYGLNILAEDIQDDCDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGVLFKALA 202
           AA +    +L+  + D     +             +++    S++FSL+E  G L K L 
Sbjct: 2   AAVVLENGVLSRKLSDFGQETSYIE--------DNSNQNGAISLIFSLKEEVGALAKVLR 53

Query: 203 VFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLK 262
           +F    INLT IESRP R                 +Y F+   +         + ++ L+
Sbjct: 54  LFEENDINLTHIESRPSRLNK-------------DEYEFFTYLDKR-TKPVLGSIIKSLR 99

Query: 263 EFATFLRVLGSYPIDTTIVP 282
                     S   +   VP
Sbjct: 100 NDIGATVHELSRDKEKNTVP 119


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 48/319 (15%), Positives = 94/319 (29%), Gaps = 80/319 (25%)

Query: 19  EAVPCEQFDTAFEAVERWL------VDRAVLPIENSLGGSIHRNYDLLLRHRLHI---VG 69
             V C+     F     WL          VL +   L   I  N+     H  +I   + 
Sbjct: 174 YKVQCKMDFKIF-----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 70  EVKFAVRHCLLANPGVK-------VEDLKRVLSHPQALA-QCENTL--TKLGLVREAVDD 119
            ++  +R  L + P          V++  +      A    C+  L  T+   V + +  
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQN-AKAW---NAFNLSCK-ILLTTRFKQVTDFLS- 282

Query: 120 TAGAAKYVSFEQLKDA-------GAVAS----------SSAAAI--YGLNILAEDIQDDC 160
            A    ++S +              +                      L+I+AE I+D  
Sbjct: 283 -AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 161 DNVTRFLMLAREPIIPGTDRPFKTSIVFSLEE-GPGV---LFKALAVF--------ALRQ 208
                +  +  +           T I  SL    P     +F  L+VF         L  
Sbjct: 342 ATWDNWKHVNCDK--------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 209 I---NLTKIESRPLRNQPLRSS--DDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKE 263
           +   ++ K +   + N+  + S  +             Y++ +  + ++ A     H + 
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----H-RS 448

Query: 264 FATFLRVLGSYPIDTTIVP 282
                 +  ++  D  I P
Sbjct: 449 IVDHYNIPKTFDSDDLIPP 467



 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 36/272 (13%), Positives = 74/272 (27%), Gaps = 76/272 (27%)

Query: 36  WLVDRAVL--PIENSLGGSIH-------RNYDLLLRH--RLHIVGEVKFAVRHCLLANPG 84
           W+     L   ++  +   I         + + +L    +L    +  +  R    +N  
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 85  VKVEDLKRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAA 144
           +++  ++  L         EN L    LV   + +                  V ++ A 
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCL----LV---LLN------------------VQNAKAW 259

Query: 145 AIYGLN----ILAEDIQDDCDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGVLFKA 200
             + L+    +           VT FL  A    I         S+  + +E   +L K 
Sbjct: 260 NAFNLSCKILLTTRFK-----QVTDFLSAATTTHISLDHH----SMTLTPDEVKSLLLKY 310

Query: 201 L--AVFALR----QIN--LTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDF----EAS 248
           L      L       N     I +  +R+               + ++         E+S
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--------DNWKHVNCDKLTTIIESS 362

Query: 249 MADQKAQNALRHLKEFATFLRVLGSYPIDTTI 280
           +   +     +     + F       P    I
Sbjct: 363 LNVLEPAEYRKMFDRLSVF-------PPSAHI 387


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 54/184 (29%)

Query: 123 AAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLMLAREPIIPGTDRPF 182
            A +    QL++             G     ++     + V +FL      + P     F
Sbjct: 24  TASFFIASQLQEQ--FNKILPEPTEGF-AADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80

Query: 183 KTSIVFSLEEGPGVLFK----------ALAVFALRQINLTKIES---------------- 216
              +   L E     F+          ALA   L Q N T +                  
Sbjct: 81  DQVLNLCLTE-----FENCYLEGNDIHALAA-KLLQENDTTLVKTKELIKNYITARIMAK 134

Query: 217 RPLRNQP----LRSSDDNSG-----FG------KYFDYL--FYVDFEASMAD--QKAQNA 257
           RP   +      R+  + +      FG       YF+ L   Y  +   + D  + +   
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194

Query: 258 LRHL 261
           L  L
Sbjct: 195 LSEL 198



 Score = 36.2 bits (83), Expect = 0.012
 Identities = 44/268 (16%), Positives = 76/268 (28%), Gaps = 91/268 (33%)

Query: 24   EQFDTAFEAVERWLVDRAVLPIENSLGGSI---HRNYDLLLRHRLHIVGEVKFAVRHCLL 80
            + + T+  A + W  +RA    +++ G SI     N  + L   +H  GE    +R    
Sbjct: 1634 DLYKTSKAAQDVW--NRADNHFKDTYGFSILDIVINNPVNLT--IHFGGEKGKRIRENYS 1689

Query: 81   A----------------NPGVKVEDLKRVLSHPQ-ALAQCENT---LTKLGLVREAVDDT 120
            A                   +            +  L+  + T   LT            
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT------------ 1737

Query: 121  AGAAKYVSFEQLKD----------AG-------AVASSS-----AAAIY-----GLNILA 153
                +  +FE LK           AG       A+AS +      + +      G+  + 
Sbjct: 1738 --LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM-TMQ 1794

Query: 154  EDIQDDCDNVTRFLMLAREP--IIPGTDRPFKTSIV--FSLEEG----------PG---V 196
              +  D    + + M+A  P  +     +     +V       G               V
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854

Query: 197  L---FKALAVFA--LRQINLTKIESRPL 219
                 +AL      L  I L KI+   L
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDIIEL 1882



 Score = 33.1 bits (75), Expect = 0.13
 Identities = 34/173 (19%), Positives = 50/173 (28%), Gaps = 57/173 (32%)

Query: 52  SIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAQCENT----- 106
           S   +    +     I G     VR C  A P   +         P  L           
Sbjct: 291 SFFVSVRKAITVLFFI-G-----VR-CYEAYPNTSLP--------PSILEDSLENNEGVP 335

Query: 107 ---LTKLGLVREAVDDTAGAA-KYVSFEQ-----LKDAGA---VASSSAAAIYGLNILAE 154
              L+   L +E V D       ++   +     L + GA   V S    ++YGLN+   
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTLR 394

Query: 155 DI--QDDCDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGVLFKALAVFA 205
                   D  +R         IP ++R  K S  F            L V +
Sbjct: 395 KAKAPSGLDQ-SR---------IPFSERKLKFSNRF------------LPVAS 425


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 1.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 7/34 (20%)

Query: 98  QALAQCENTLTKLGLVREAVDDTAGA-AKYVSFE 130
           QAL + + +L KL       DD+A A A   + E
Sbjct: 20  QALKKLQASL-KL-----YADDSAPALAIKATME 47


>1u8s_A Glycine cleavage system transcriptional repressor, putative;
           structural genomics, protein structure initiative (PSI),
           domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5
           d.58.18.5
          Length = 192

 Score = 28.1 bits (62), Expect = 2.5
 Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 15/123 (12%)

Query: 153 AEDIQDDCDNVTRFLMLAREPIIPGTDRPFKTSIVFSLE----EGPGVLFKALAVFALRQ 208
              ++     + +   L               +    +     +  G+  K    FA RQ
Sbjct: 59  ITRVETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQ 118

Query: 209 INLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRH-LKEFATF 267
           I +  + ++ +    L S  +           F++   A +        L+       T 
Sbjct: 119 IGMASLSAQTISKDKLHSEQN----------QFHIAISARVDSGCNLMQLQEEFDALCTA 168

Query: 268 LRV 270
           L V
Sbjct: 169 LDV 171


>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
           signaling protein; 2.04A {Bordetella pertussis} PDB:
           3mpl_A
          Length = 267

 Score = 28.5 bits (64), Expect = 2.5
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 2   VRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLL 61
           VR + +    ++ YP  + V  +    A   V     D AV+  + S    ++R +    
Sbjct: 145 VRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQAD-AVVQTQISASYYVNRYFA--- 200

Query: 62  RHRLHIVGEVK-------FAVR 76
             +L I   +         A  
Sbjct: 201 -GKLRIASALDLPPAEIALATT 221


>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain,
           RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP:
           d.58.7.1
          Length = 103

 Score = 26.4 bits (59), Expect = 3.9
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 5/36 (13%)

Query: 202 AVFALRQINLTKIESRPLR-----NQPLRSSDDNSG 232
           A  AL  +N  KI  + ++         + S  +SG
Sbjct: 68  AAAALAAMNGRKILGKEVKVNWATTPSSQKSGPSSG 103


>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC
           transport, cysteine uptake; 2.00A {Campylobacter jejuni}
           SCOP: c.94.1.1
          Length = 292

 Score = 27.0 bits (60), Expect = 7.4
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 2   VRGAYSESAAEKAYPNCEAVPCEQFDTAFEA-----VERWLVDRAVL 43
            +G  +++   + YPN + +  +Q    F A      +    D  +L
Sbjct: 159 NKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLL 205


>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
           transhydrogenase domain I, oxidoreductase; 1.81A
           {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
           1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
           2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
          Length = 384

 Score = 26.9 bits (60), Expect = 8.1
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 91  KRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKYVSFEQLKDAGAVASSSAAAIYG 148
            RV   P+ + +    L  LG     V+  AG    ++ + L  AGA  +S+AA    
Sbjct: 14  DRVAISPEVVKK----LVGLGF-EVIVEQGAGVGASITDDALTAAGATIASTAAQALS 66


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,369,817
Number of extensions: 270650
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 26
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)