RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 048784
         (282 letters)



>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 184

 Score =  149 bits (378), Expect = 1e-45
 Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 6/178 (3%)

Query: 1   GVRGAYSESAAEKAYPNCEA--VPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYD 58
           G +G +S  A  + +   EA   P        +AV        V+PIENS+ G+I+   D
Sbjct: 7   GPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVAD 66

Query: 59  LLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAQCENTLTKLGLVREAVD 118
            L +  +   GE++  +   L  N    + D+K+V S   A++Q  N + +     + VD
Sbjct: 67  ALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVD 126

Query: 119 DTAGAAKYVSFEQLKDAGAVASSSAAAIYGLNILAEDIQDDCDNVTRFLMLAREPIIP 176
            T  +   +         A+A   +   YG   +   I+D   NVTRFL++  +    
Sbjct: 127 STIQSLTKIEN----GVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQQFD 180


>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
           domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 80

 Score = 89.8 bits (223), Expect = 1e-23
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 14/91 (15%)

Query: 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYV 243
             ++  + + PG+L   L  FAL  INL+ IESRPL+ Q                Y F+V
Sbjct: 3   MFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL-------------GMYRFFV 49

Query: 244 DFEASMADQKAQNALRHLKEFATFLRVLGSY 274
             ++++     +  +  L+     + ++G++
Sbjct: 50  QADSAI-TTDIKKVIAILETLDFKVEMIGAF 79


>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 97

 Score = 82.2 bits (203), Expect = 1e-20
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 174 IIPGTDRPFKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGF 233
           I   +++    S++FSL+E  G L K L +F    INLT IESRP R             
Sbjct: 7   IEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK---------- 56

Query: 234 GKYFDYLFYVDFEASMADQKAQNALRHLK-EFATFLRVLG 272
               +Y F+   +         + ++ L+ +    +  L 
Sbjct: 57  ---DEYEFFTYLDK-RTKPVLGSIIKSLRNDIGATVHELS 92


>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor
           VC2159 {Vibrio cholerae [TaxId: 666]}
          Length = 93

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 11/96 (11%)

Query: 179 DRPFKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFD 238
              +   +    ++  G+  K    FA RQI +  + ++ +    L S  +         
Sbjct: 2   THAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQN--------- 52

Query: 239 YLFYVDFEASMADQKAQNALRH-LKEFATFLRVLGS 273
             F++   A +        L+       T L V GS
Sbjct: 53  -QFHIAISARVDSGCNLMQLQEEFDALCTALDVQGS 87


>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 77

 Score = 25.1 bits (55), Expect = 3.3
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 184 TSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRN 221
             +    E   GVL     + A    N+T  ++  +++
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKH 39


>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
           IlvH {Nitrosomonas europaea [TaxId: 915]}
          Length = 77

 Score = 24.6 bits (54), Expect = 4.4
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 183 KTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRNQ 222
           +  I   +E   G L +   +F+ R  N+  +   P  + 
Sbjct: 2   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDP 41


>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma
           genitalium [TaxId: 2097]}
          Length = 140

 Score = 25.4 bits (55), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 213 KIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQN 256
           KIE + L+NQ    +  N   GK  D L       ++++QKA N
Sbjct: 63  KIEEQQLKNQLEIQTKYNKISGKKIDLLTTAVVLCALSEQKAHN 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,017,228
Number of extensions: 46021
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 10
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)