BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048786
(862 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 24/143 (16%)
Query: 6 DLSDLYLDGTSITEVPSSIXXXXXXXXXXXKGCKNLSSLPVTISSLKCLRTLELSGCSKL 65
+L L L+ T I +P+SI + LS+L I L L L+L GC+ L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL 242
Query: 66 KKFPQIVASMEDLSKLYLDGTSIAEVPSSIXXXXXXXXXXXXXCKNLVRLPSSINGLKSL 125
+ +P I L +L L C NL+ LP I+ L L
Sbjct: 243 RNYPPIFGGRAPLKRLILKD-----------------------CSNLLTLPLDIHRLTQL 279
Query: 126 KTLNLSGCCKLENVPDTLGKVES 148
+ L+L GC L +P + ++ +
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPA 302
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 41 LSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASME---------DLSKLYLDGTSIAEV 91
L +LP +I+SL LR L + C +L + P+ +AS + +L L L+ T I +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 92 PSSIXXXXXXXXXXXXXCKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEE 151
P+SI L L +I+ L L+ L+L GC L N P G L+
Sbjct: 199 PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 152 L 152
L
Sbjct: 258 L 258
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 73/209 (34%), Gaps = 64/209 (30%)
Query: 656 EFPDIVQVLS-------DGTDIRELSLAIELLFGLVQLTLNGCKNLERLPRTISALKYLS 708
+FPD LS D + EL + GL LTL L LP +I++L L
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNRLR 153
Query: 709 TLNLSGLSKFREFPEITSSRD---------QLLEIHLEGTAIRGLPASI----------- 748
L++ + E PE +S D L + LE T IR LPASI
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213
Query: 749 ---------------------ELLSGNILSN---------------LKDCKNLKSLPSTI 772
+L L N LKDC NL +LP I
Sbjct: 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 773 NGLRSLRMMYPSGCSKLKNVTETLGKVES 801
+ L L + GC L + + ++ +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 1 MASMKDLSDLYLDGTSITEVPSSIXXXXXXXXXXXKGCKNLSSLPVTISSLKCLRTLELS 60
+A++++L L + + ++ + +I +GC L + P L+ L L
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 61 GCSKLKKFPQIVASMEDLSKLYLDG-TSIAEVPSSI 95
CS L P + + L KL L G +++ +PS I
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 190 HLHLPFNLLGKSSCPVALMLPSLTG-VCSLTKLDLSDCGLGEAA---IPSDIDNLHSLKE 245
L L N LG V L+L L C + KL L +CGL EA +P + +L +L+E
Sbjct: 56 ELSLRTNELGDGG--VGLVLQGLQNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTLRE 113
Query: 246 LYLNRN 251
L+LN N
Sbjct: 114 LHLNDN 119
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 16/64 (25%)
Query: 7 LSDLYLDGTSITEVPSSIXXXXXXXXXXXKGCKNLSSLPVTISSLKCLRTL--ELSGCSK 64
L+ LYL+G S+TE+P+ I KNLS+L V S L +L EL C +
Sbjct: 249 LTRLYLNGNSLTELPAEI--------------KNLSNLRVLDLSHNRLTSLPAELGSCFQ 294
Query: 65 LKKF 68
LK F
Sbjct: 295 LKYF 298
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 43 SLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSI-AEVPSSIXXXXXX 101
++P ++ SL LR L+L + PQ + ++ L L LD + E+PS +
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 102 XXXXXXXCKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVS 155
+ +P I L++L L LS N+P LG SL LD++
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 804 VRLSSWNRPKMQNDFDCVEQSAVETVTKLAKAELLRDSD--SWKKNVD-----KCMKLST 856
+R+ P+ +N ++CV Q++V +T AK +LR+ S N+D K ++ +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 857 TATSAC 862
TAT C
Sbjct: 125 TATMLC 130
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 43 SLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSI-AEVPSSIXXXXXX 101
++P ++ SL LR L+L + PQ + ++ L L LD + E+PS +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 102 XXXXXXXCKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVS 155
+ +P I L++L L LS N+P LG SL LD++
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 804 VRLSSWNRPKMQNDFDCVEQSAVETVTKLAKAELLRDSD--SWKKNVD-----KCMKLST 856
+R+ P+ +N ++CV Q++V +T AK +LR+ S N+D K ++ +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 857 TATSAC 862
TAT C
Sbjct: 125 TATMLC 130
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 71 IVASMEDLSKLYLDGTSIAEVPSSIXXXXXXXXXXXXXCKNLVRLPS-SINGLKSLKTLN 129
+ + L KLYL G + +PS + L +P+ + + L +L+TL+
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 130 LSGCCKLENVP----DTLGKVESL 149
LS +L++VP D LGK++++
Sbjct: 162 LS-TNQLQSVPHGAFDRLGKLQTI 184
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 71 IVASMEDLSKLYLDGTSIAEVPSSIXXXXXXXXXXXXXCKNLVRLPS-SINGLKSLKTLN 129
+ + L KLYL G + +PS + L +P+ + + L +L+TL+
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 130 LSGCCKLENVP----DTLGKVESL 149
LS +L++VP D LGK++++
Sbjct: 162 LS-TNQLQSVPHGAFDRLGKLQTI 184
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 21/159 (13%)
Query: 41 LSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIXXXXX 100
L+SLP S LK L + ++L P + + +++L TS+ +PS +
Sbjct: 213 LTSLPALPSGLKEL----IVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSV 268
Query: 101 XXXXXXXXCKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160
L RLP S+ L S T+NL G E L ++ S SG IR
Sbjct: 269 YR-------NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP--GYSGPIIR 319
Query: 161 RPTSSIFLMKNLRSLYFSGCN--------EPPASASWHL 191
+ + R+L+ + + EP + WH+
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 190 HLHLPFNLLGKSSCPVALMLPSLTG-VCSLTKLDLSDCGLGEAA---IPSDIDNLHSLKE 245
L L N LG + V L+L L C + KL L +C L EA +PS + +L +L+E
Sbjct: 56 ELCLRTNELGDAG--VHLVLQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRE 113
Query: 246 LYLNRN 251
L+L+ N
Sbjct: 114 LHLSDN 119
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 804 VRLSSWNRPKMQNDFDCVEQSAVETVTKLAKAELLRDSD--SWKKNVD-----KCMKLST 856
+R+ P+ +N ++CV Q++V +T AK +LR+ S N+D K ++ +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 857 TATSAC 862
TAT C
Sbjct: 125 TATMLC 130
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 212 LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLN 249
L+G SL KL++ DC G+ A+ ++ L +++ L+++
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 25/212 (11%)
Query: 50 SLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIXXXXXXXXXXXXXC 109
+LK L TL L K P A + L +LYL + E+P +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 110 KNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLM 169
+ + S NGL + + L G L++ G + +++L + IR ++I +
Sbjct: 134 TKVRK--SVFNGLNQMIVVEL-GTNPLKSSGIENGAFQGMKKL----SYIRIADTNITTI 186
Query: 170 KNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLG 229
PP+ LHL N + K SL G+ +L KL LS +
Sbjct: 187 PQ---------GLPPSLTE--LHLDGNKITKVDAA------SLKGLNNLAKLGLSFNSI- 228
Query: 230 EAAIPSDIDNLHSLKELYLNRNNFVTLPASIS 261
A + N L+EL+LN N V +P ++
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 25/212 (11%)
Query: 50 SLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIXXXXXXXXXXXXXC 109
+LK L TL L K P A + L +LYL + E+P +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 110 KNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLM 169
+ + S NGL + + L G L++ G + +++L + IR ++I +
Sbjct: 134 TKVRK--SVFNGLNQMIVVEL-GTNPLKSSGIENGAFQGMKKL----SYIRIADTNITTI 186
Query: 170 KNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLG 229
PP+ LHL N + K SL G+ +L KL LS +
Sbjct: 187 PQ---------GLPPSLTE--LHLDGNKITKVDAA------SLKGLNNLAKLGLSFNSI- 228
Query: 230 EAAIPSDIDNLHSLKELYLNRNNFVTLPASIS 261
A + N L+EL+LN N V +P ++
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,776,493
Number of Sequences: 62578
Number of extensions: 922316
Number of successful extensions: 1891
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1835
Number of HSP's gapped (non-prelim): 83
length of query: 862
length of database: 14,973,337
effective HSP length: 107
effective length of query: 755
effective length of database: 8,277,491
effective search space: 6249505705
effective search space used: 6249505705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)