Query 048786
Match_columns 862
No_of_seqs 544 out of 4473
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 13:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9.6E-33 2.1E-37 348.0 37.7 449 7-489 591-1100(1153)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-33 7E-38 351.7 30.0 289 6-297 70-368 (968)
3 PLN00113 leucine-rich repeat r 100.0 8.9E-32 1.9E-36 338.7 31.8 134 676-810 447-581 (968)
4 KOG0472 Leucine-rich repeat pr 99.9 2.1E-29 4.5E-34 261.0 -4.4 238 7-274 47-285 (565)
5 PLN03210 Resistant to P. syrin 99.9 3.1E-24 6.7E-29 271.1 28.5 122 668-793 789-910 (1153)
6 KOG0472 Leucine-rich repeat pr 99.9 8.8E-28 1.9E-32 249.0 -12.1 241 3-275 66-308 (565)
7 KOG0444 Cytoskeletal regulator 99.9 7.3E-25 1.6E-29 237.3 -4.1 248 2-275 4-256 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 1.2E-23 2.5E-28 228.1 -3.5 297 3-303 53-380 (1255)
9 KOG0618 Serine/threonine phosp 99.8 3.3E-21 7.3E-26 219.2 -2.9 252 6-274 46-297 (1081)
10 KOG4194 Membrane glycoprotein 99.8 5.5E-19 1.2E-23 191.5 5.7 291 2-296 99-427 (873)
11 KOG4194 Membrane glycoprotein 99.7 1.5E-18 3.2E-23 188.2 3.1 288 4-292 148-446 (873)
12 KOG0618 Serine/threonine phosp 99.7 2.7E-18 5.8E-23 195.8 -1.9 140 665-810 294-486 (1081)
13 PRK15370 E3 ubiquitin-protein 99.6 7.4E-15 1.6E-19 174.6 14.1 228 5-282 178-405 (754)
14 PRK15387 E3 ubiquitin-protein 99.6 3.3E-14 7.2E-19 168.0 16.8 237 6-302 202-438 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 2E-14 4.4E-19 170.9 11.9 224 5-275 199-426 (754)
16 PRK15387 E3 ubiquitin-protein 99.5 7.6E-14 1.7E-18 165.0 16.2 231 5-295 222-455 (788)
17 KOG0617 Ras suppressor protein 99.4 3E-15 6.6E-20 139.3 -4.9 84 49-134 30-113 (264)
18 cd00116 LRR_RI Leucine-rich re 99.4 2.1E-14 4.6E-19 157.6 -1.7 248 10-275 3-289 (319)
19 KOG0617 Ras suppressor protein 99.4 4.4E-15 9.4E-20 138.2 -6.1 165 17-185 23-188 (264)
20 cd00116 LRR_RI Leucine-rich re 99.4 9.3E-14 2E-18 152.4 -0.6 255 4-275 22-318 (319)
21 KOG4658 Apoptotic ATPase [Sign 99.3 1E-12 2.2E-17 158.9 7.2 255 5-281 523-787 (889)
22 KOG4237 Extracellular matrix p 99.2 3.3E-13 7.2E-18 141.3 -5.1 271 12-287 53-345 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.2 1E-11 2.3E-16 150.2 6.8 179 3-184 543-731 (889)
24 KOG4237 Extracellular matrix p 99.2 1.3E-12 2.7E-17 137.0 -4.1 248 39-295 56-332 (498)
25 KOG0532 Leucine-rich repeat (L 98.9 8.6E-11 1.9E-15 128.6 -3.7 189 56-275 79-271 (722)
26 KOG3207 Beta-tubulin folding c 98.8 7.2E-10 1.6E-14 118.2 0.5 204 26-274 119-336 (505)
27 COG4886 Leucine-rich repeat (L 98.8 7.4E-09 1.6E-13 117.3 7.8 197 56-281 97-294 (394)
28 COG4886 Leucine-rich repeat (L 98.8 4.2E-09 9.2E-14 119.2 5.4 154 24-181 112-266 (394)
29 KOG0532 Leucine-rich repeat (L 98.8 2.1E-10 4.6E-15 125.6 -4.9 173 8-186 78-250 (722)
30 KOG3207 Beta-tubulin folding c 98.7 2.4E-09 5.2E-14 114.3 0.6 197 73-292 118-333 (505)
31 KOG1259 Nischarin, modulator o 98.7 2.9E-09 6.2E-14 108.1 0.9 225 26-281 180-415 (490)
32 KOG1909 Ran GTPase-activating 98.7 8.4E-10 1.8E-14 114.8 -5.3 232 25-275 27-309 (382)
33 PF14580 LRR_9: Leucine-rich r 98.5 7.8E-08 1.7E-12 94.3 3.0 101 6-110 20-124 (175)
34 PRK15386 type III secretion pr 98.5 2.1E-07 4.6E-12 101.9 6.3 74 667-751 61-137 (426)
35 PRK15386 type III secretion pr 98.4 3.3E-07 7.2E-12 100.4 7.0 115 677-802 48-182 (426)
36 KOG1259 Nischarin, modulator o 98.4 5.9E-08 1.3E-12 98.7 0.3 127 52-183 284-412 (490)
37 PF14580 LRR_9: Leucine-rich r 98.3 4.7E-07 1E-11 88.8 4.7 103 75-180 41-150 (175)
38 PLN03150 hypothetical protein; 98.3 1.8E-06 3.9E-11 102.9 8.2 111 29-139 419-531 (623)
39 PLN03150 hypothetical protein; 98.2 3.7E-06 8E-11 100.2 8.4 108 53-160 419-528 (623)
40 KOG2120 SCF ubiquitin ligase, 98.0 1.3E-07 2.7E-12 96.5 -7.1 175 100-296 186-374 (419)
41 KOG2120 SCF ubiquitin ligase, 98.0 2.1E-07 4.5E-12 94.9 -5.8 179 77-275 186-374 (419)
42 KOG4341 F-box protein containi 98.0 1.9E-07 4.1E-12 99.6 -6.4 64 214-277 344-414 (483)
43 PF13855 LRR_8: Leucine rich r 97.9 8.4E-06 1.8E-10 65.4 3.6 57 5-62 1-59 (61)
44 KOG0531 Protein phosphatase 1, 97.9 2.4E-06 5.1E-11 97.3 -0.8 238 4-275 71-316 (414)
45 KOG4341 F-box protein containi 97.8 5.9E-07 1.3E-11 95.9 -6.2 274 6-279 139-441 (483)
46 KOG1909 Ran GTPase-activating 97.8 3.4E-06 7.5E-11 88.4 -0.6 111 72-182 181-310 (382)
47 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.3E-10 82.7 2.6 232 51-304 44-287 (418)
48 KOG0531 Protein phosphatase 1, 97.8 3.7E-06 8.1E-11 95.7 -1.4 128 51-183 71-199 (414)
49 PF13855 LRR_8: Leucine rich r 97.7 2.6E-05 5.7E-10 62.6 3.5 56 53-109 2-59 (61)
50 PF12799 LRR_4: Leucine Rich r 97.6 6.5E-05 1.4E-09 55.6 3.2 41 729-770 1-41 (44)
51 PF12799 LRR_4: Leucine Rich r 97.3 0.00032 6.8E-09 52.0 3.7 41 5-46 1-41 (44)
52 KOG1859 Leucine-rich repeat pr 97.2 5.5E-06 1.2E-10 93.9 -8.6 202 27-257 83-295 (1096)
53 KOG3665 ZYG-1-like serine/thre 97.2 0.00014 3E-09 86.8 1.6 132 28-160 122-263 (699)
54 KOG3665 ZYG-1-like serine/thre 97.1 0.00018 3.9E-09 85.8 2.1 129 680-810 121-260 (699)
55 COG5238 RNA1 Ran GTPase-activa 97.1 6.9E-05 1.5E-09 76.0 -1.2 63 212-274 181-252 (388)
56 KOG2982 Uncharacterized conser 97.1 0.00018 3.9E-09 74.0 1.2 184 50-254 69-262 (418)
57 KOG1859 Leucine-rich repeat pr 97.1 1.6E-05 3.4E-10 90.4 -7.5 153 21-181 102-265 (1096)
58 KOG1644 U2-associated snRNP A' 96.5 0.0049 1.1E-07 60.5 5.8 84 73-157 61-150 (233)
59 KOG4579 Leucine-rich repeat (L 96.3 0.00055 1.2E-08 62.8 -1.8 103 6-110 28-134 (177)
60 KOG1947 Leucine rich repeat pr 96.2 0.00048 1E-08 80.0 -3.5 130 51-180 187-331 (482)
61 KOG4579 Leucine-rich repeat (L 96.0 0.00052 1.1E-08 62.9 -3.6 106 27-135 26-135 (177)
62 KOG1644 U2-associated snRNP A' 95.9 0.015 3.3E-07 57.1 6.1 62 120-181 61-124 (233)
63 KOG1947 Leucine rich repeat pr 95.5 0.002 4.3E-08 74.8 -2.3 132 25-156 185-330 (482)
64 KOG2739 Leucine-rich acidic nu 94.3 0.027 5.7E-07 57.8 2.5 87 212-300 61-158 (260)
65 PF00560 LRR_1: Leucine Rich R 94.3 0.022 4.8E-07 35.1 1.2 18 731-748 2-19 (22)
66 COG5238 RNA1 Ran GTPase-activa 94.2 0.025 5.3E-07 58.0 1.9 177 4-182 29-254 (388)
67 KOG2123 Uncharacterized conser 93.7 0.0046 1E-07 63.4 -4.2 96 169-291 18-123 (388)
68 PF13306 LRR_5: Leucine rich r 93.6 0.23 5E-06 46.0 7.4 35 72-107 54-89 (129)
69 PF00560 LRR_1: Leucine Rich R 93.6 0.034 7.4E-07 34.3 1.0 21 753-774 1-21 (22)
70 KOG2739 Leucine-rich acidic nu 93.5 0.048 1E-06 55.9 2.5 39 51-89 64-104 (260)
71 PF13504 LRR_7: Leucine rich r 90.5 0.15 3.3E-06 29.2 1.2 16 753-769 2-17 (17)
72 PF13306 LRR_5: Leucine rich r 90.5 1 2.2E-05 41.6 7.6 101 48-156 8-112 (129)
73 KOG2123 Uncharacterized conser 90.5 0.016 3.5E-07 59.5 -4.9 61 50-112 39-101 (388)
74 PF13504 LRR_7: Leucine rich r 88.8 0.25 5.5E-06 28.3 1.3 16 730-745 2-17 (17)
75 smart00369 LRR_TYP Leucine-ric 83.0 0.82 1.8E-05 29.3 1.6 19 729-747 2-20 (26)
76 smart00370 LRR Leucine-rich re 83.0 0.82 1.8E-05 29.3 1.6 19 729-747 2-20 (26)
77 KOG0473 Leucine-rich repeat pr 79.8 0.052 1.1E-06 54.5 -7.1 86 23-110 37-122 (326)
78 smart00370 LRR Leucine-rich re 78.2 1.6 3.5E-05 27.9 1.8 21 240-260 1-21 (26)
79 smart00369 LRR_TYP Leucine-ric 78.2 1.6 3.5E-05 27.9 1.8 21 240-260 1-21 (26)
80 KOG3864 Uncharacterized conser 77.1 0.6 1.3E-05 46.3 -0.7 16 705-720 151-166 (221)
81 KOG3864 Uncharacterized conser 73.8 0.65 1.4E-05 46.1 -1.4 38 240-277 150-189 (221)
82 KOG4308 LRR-containing protein 64.7 0.07 1.5E-06 61.3 -12.0 135 123-275 144-301 (478)
83 KOG4308 LRR-containing protein 59.3 0.13 2.8E-06 59.1 -11.1 177 7-183 89-303 (478)
84 KOG0473 Leucine-rich repeat pr 56.4 0.3 6.5E-06 49.2 -7.5 86 48-135 38-123 (326)
85 smart00364 LRR_BAC Leucine-ric 52.9 8.8 0.00019 24.8 1.3 18 241-258 2-19 (26)
86 smart00367 LRR_CC Leucine-rich 49.1 12 0.00027 23.8 1.6 15 776-790 2-16 (26)
87 smart00365 LRR_SD22 Leucine-ri 37.3 26 0.00057 22.6 1.7 16 76-91 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 31.7 24 0.00051 21.9 0.8 14 241-254 2-15 (24)
89 smart00368 LRR_RI Leucine rich 24.4 38 0.00082 22.1 0.9 15 216-230 2-16 (28)
90 KOG3763 mRNA export factor TAP 21.6 44 0.00096 38.5 1.2 84 213-297 215-313 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.6e-33 Score=348.00 Aligned_cols=449 Identities=25% Similarity=0.317 Sum_probs=278.9
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 7 LSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 7 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
||.|++.++.++.+|..+ ...+|+.|++.+| .++.+|..+..+++|+.|+|++|..++.+|. ++.+++|++|++++|
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 455555555555555544 3456666666663 3556666666677777777777666666664 566677777777665
Q ss_pred -cCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch
Q 048786 87 -SIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS 165 (862)
Q Consensus 87 -~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 165 (862)
.+..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|.+..+|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc
Confidence 455667777777777777777777777776655 5677777777777666665542 34666777777776666654
Q ss_pred hhccCCccEEEc-------------------------------cCCCCCCCcc-ccccccccccccCCCCCccccccCcC
Q 048786 166 IFLMKNLRSLYF-------------------------------SGCNEPPASA-SWHLHLPFNLLGKSSCPVALMLPSLT 213 (862)
Q Consensus 166 l~~l~~L~~L~L-------------------------------~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~lp~l~ 213 (862)
+ .+++|+.|.+ ++|......+ .......+..+.+.+|.....+|...
T Consensus 744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 3 2344444444 3333221111 11111223334444444444444433
Q ss_pred CCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCCC---CCCcEE
Q 048786 214 GVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQIP---PNLQFV 290 (862)
Q Consensus 214 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~lp---~sL~~L 290 (862)
.+++|+.|++++|... ..+|. ..++|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+ ++|+.+
T Consensus 823 ~L~sL~~L~Ls~c~~L-~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 823 NLESLESLDLSGCSRL-RTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred CccccCEEECCCCCcc-ccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 4555666666655432 12232 2357888999999999999999999999999999999999998644 677888
Q ss_pred eccCCCCceeecCccc---------------cccceeeeeccchhHHHHHhcchhHHHHHHHHHHhcccCCCCceEEecc
Q 048786 291 RANGCSSLVTLFGALK---------------LCRSKYTIINCIDSLKLLRKNGLAISMLREYLELQAVSDPGHKLSIVFP 355 (862)
Q Consensus 291 ~i~~C~~L~~l~~~~~---------------~~~~~l~i~~C~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 355 (862)
++.+|++|+.++.... +....+.+.+|.++.+... ++ . ......+++|
T Consensus 899 ~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~------------l~--~---~~~~~~~~l~ 961 (1153)
T PLN03210 899 DFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL------------LQ--Q---QSIFKQLILS 961 (1153)
T ss_pred ecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh------------hc--c---cccceEEECC
Confidence 9999999987652111 0112234458888743221 11 1 1112356899
Q ss_pred CCCCCCccccCCCCcEEE-EEcCCCCCCCCceEEEEEEEEEeccCCCCccccccCCCCceeEEEEecCCCceEEEEc---
Q 048786 356 GSQIPKWFMYQNEGSSIT-VTRPSYLYNVNKVVGFAICCVFQVPKHSTGTYLFHSYPAHELECSMDGSGEGHYIYFR--- 431 (862)
Q Consensus 356 g~~iP~wf~~~~~g~s~~-~~lp~~~~~~~~~lgfa~c~v~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~--- 431 (862)
|.++|.||.|+..|++++ +++|+.|+... |.||++|+|+.+....... ......+.|.+.+..+..+....
T Consensus 962 g~evp~~f~hr~~g~sl~~i~l~~~~~~~~-~~~f~~c~v~~~~~~~~~~----~~~~~~~~c~~~~~~~~~~~~~~~~~ 1036 (1153)
T PLN03210 962 GEEVPSYFTHRTTGASLTNIPLLHISPCQP-FFRFRACAVVDSESFFIIS----VSFDIQVCCRFIDRLGNHFDSPYQPH 1036 (1153)
T ss_pred CccCchhccCCcccceeeeeccCCcccCCC-ccceEEEEEEecCccccCC----CceeEEEEEEEECCCCCccccCCCce
Confidence 999999999999999998 99999998877 9999999999855431110 11245677887776655443211
Q ss_pred cccccccCCeEEEEEecCC--CC---CCCCCceEEEEEEEecc-CCCceEEEeeeEEeeccccc
Q 048786 432 GKFGHVVSDHLWLLFLPRH--GH---NWQFESNLIRLSFRSIS-DPTWKVKRCGFHPIYMHEVE 489 (862)
Q Consensus 432 ~~~~~~~s~hl~~~~~~~~--~~---~~~~~~~~~~~~f~~~~-~~~~~vk~cGv~liy~~~~~ 489 (862)
.+......+|++++..... .. .....+.|+.+.|.+.. ....+||+|||+++|.++..
T Consensus 1037 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1037 VFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred eEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCc
Confidence 1122345667776643211 10 12235778888887622 22359999999999966644
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-33 Score=351.70 Aligned_cols=289 Identities=24% Similarity=0.294 Sum_probs=175.7
Q ss_pred CCcEEEeecCCCc-ccCccccCCCCCcEEEEeCCCCCCccccccC-CCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 6 DLSDLYLDGTSIT-EVPSSIELLTGLELLTLKGCKNLSSLPVTIS-SLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 6 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+++.|+|+++++. .++..+..+++|++|+|++|.....+|..+. .+.+|++|+|++|.....+|. +.+++|++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 4555666555554 3344555566666666665544445554432 555666666655544444443 33555555665
Q ss_pred cCccCc-ccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc-C
Q 048786 84 DGTSIA-EVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR-R 161 (862)
Q Consensus 84 ~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~-~ 161 (862)
++|.+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|+.|++++|.+. .
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 555554 44555555555666665555554555555555555666655555555555555555555555555555554 3
Q ss_pred CCchhhccCCccEEEccCCCCCCCc-cccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCcccCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEPPAS-ASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDIDN 239 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~ 239 (862)
+|..+..+++|++|++++|...... ........+..+....+.....+|. +..+++|++|++++|.+. +.+|.++..
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~ 306 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQ 306 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcC
Confidence 4555555555555555555433211 1111112233344444444444554 778889999999999886 457888889
Q ss_pred CCcccEEECcCCCCc-cccccccCCCCCCEEeeecCCCCCcCCCC---CCCCcEEeccCCCC
Q 048786 240 LHSLKELYLNRNNFV-TLPASISGLLNLEELELEDCKRLQSLPQI---PPNLQFVRANGCSS 297 (862)
Q Consensus 240 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~ 297 (862)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|.. .++|+.|++.++.-
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 999999999999887 67888899999999999998866666642 36788888877643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.9e-32 Score=338.71 Aligned_cols=134 Identities=21% Similarity=0.204 Sum_probs=120.7
Q ss_pred hhhccccCcEEecCCCccCcccCcCccccCcccEEecCCCCCCccCcccccCCCCccEEEeeCcccc-ccCchhhccCcC
Q 048786 676 AIELLFGLVQLTLNGCKNLERLPRTISALKYLSTLNLSGLSKFREFPEITSSRDQLLEIHLEGTAIR-GLPASIELLSGN 754 (862)
Q Consensus 676 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L 754 (862)
.+..+++|+.|++++|.-...+|..+ ..++|++|++++|.-...+|..+.++++|++|+|+++.+. .+|+.++.+++|
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 34567899999999999888888865 4789999999999877788988899999999999999887 689999999999
Q ss_pred cEEecCCCcccccCCccCCCCCCcCEEccCCCCCCcccccccCCccccceecccCC
Q 048786 755 ILSNLKDCKNLKSLPSTINGLRSLRMMYPSGCSKLKNVTETLGKVESLEVRLSSWN 810 (862)
Q Consensus 755 ~~L~l~~c~~L~~LP~~i~~L~sL~~L~i~~C~~l~~lp~~~~~l~~L~~~~~~~~ 810 (862)
++|+|++|.-...+|..++.+++|++|++++|.-...+|..++.+++|+.+..+.|
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 99999999977789999999999999999999988899999999999999887666
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=2.1e-29 Score=260.98 Aligned_cols=238 Identities=27% Similarity=0.419 Sum_probs=161.7
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 7 LSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 7 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
|..|.+++|.++.+-+.+.++..|.+|++.+ +.+..+|.+++.+..++.|+.++ .++..+|+.++.+..|++|+++.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~-n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHD-NKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEecc-chhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhcccc
Confidence 4566777777777777777777777777777 44666676777777777777777 356677777777777777777777
Q ss_pred cCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchh
Q 048786 87 SIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSI 166 (862)
Q Consensus 87 ~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l 166 (862)
.+.++|++++.+-.|+.++..+|+ ...+|..+..+.+|..+++.++. +..+|+..-.++.|++|+...|.++.+|+.+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l 202 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPEL 202 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence 777777777777777777776654 56667777777777777777743 3444444444777777777777777777777
Q ss_pred hccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccC-CCCcccE
Q 048786 167 FLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDID-NLHSLKE 245 (862)
Q Consensus 167 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~-~l~~L~~ 245 (862)
+.+.+|..|++..|+.. .+|.+.++..|++|++..|.+.. +|.... +++++..
T Consensus 203 g~l~~L~~LyL~~Nki~------------------------~lPef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIR------------------------FLPEFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLV 256 (565)
T ss_pred cchhhhHHHHhhhcccc------------------------cCCCCCccHHHHHHHhcccHHHh--hHHHHhccccccee
Confidence 77777777777776643 24445556666666666665532 454443 5666666
Q ss_pred EECcCCCCccccccccCCCCCCEEeeecC
Q 048786 246 LYLNRNNFVTLPASISGLLNLEELELEDC 274 (862)
Q Consensus 246 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c 274 (862)
|++.+|++.+.|..+..+.+|++|+++++
T Consensus 257 LDLRdNklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 257 LDLRDNKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred eeccccccccCchHHHHhhhhhhhcccCC
Confidence 66666666666666666666666666655
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.1e-24 Score=271.07 Aligned_cols=122 Identities=33% Similarity=0.552 Sum_probs=112.2
Q ss_pred CCchhchhhhhccccCcEEecCCCccCcccCcCccccCcccEEecCCCCCCccCcccccCCCCccEEEeeCccccccCch
Q 048786 668 TDIRELSLAIELLFGLVQLTLNGCKNLERLPRTISALKYLSTLNLSGLSKFREFPEITSSRDQLLEIHLEGTAIRGLPAS 747 (862)
Q Consensus 668 ~~~~~lp~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~~~~~~lp~~ 747 (862)
..+.++|.+++.+++|+.|+|++|.+++.+|..+ ++++|+.|++++|..+..+|+. .++|++|+|++++++++|.+
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHH
Confidence 3445567788899999999999999999999987 6999999999999999999986 36799999999999999999
Q ss_pred hhccCcCcEEecCCCcccccCCccCCCCCCcCEEccCCCCCCcccc
Q 048786 748 IELLSGNILSNLKDCKNLKSLPSTINGLRSLRMMYPSGCSKLKNVT 793 (862)
Q Consensus 748 i~~L~~L~~L~l~~c~~L~~LP~~i~~L~sL~~L~i~~C~~l~~lp 793 (862)
++.+++|++|++++|.+|+.+|..+..|++|+.|++++|++|..++
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 9999999999999999999999999999999999999999997654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=8.8e-28 Score=248.95 Aligned_cols=241 Identities=33% Similarity=0.423 Sum_probs=195.1
Q ss_pred CCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 3 SMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
++..|.+|++.+|++.++|.+++.+..++.+++++ +.+..+|+.++.+.+|++|+.+.+ .+..+|+.++.+-.|..|+
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhh
Confidence 46677888888888888888888888888888888 457778888888888888888884 5677888888888888888
Q ss_pred ccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC
Q 048786 83 LDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 83 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
..+|++.++|.+++++.+|..+++.+++ +..+|...-+++.|++|+... +.++.+|+.++.+.+|+.|++..|.+..+
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccC
Confidence 8888888888888888888888888866 455555555588888888776 56788888888888888888888888888
Q ss_pred CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC--cCCCCCccEEEccCCCCCCCCCCcccCCC
Q 048786 163 TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS--LTGVCSLTKLDLSDCGLGEAAIPSDIDNL 240 (862)
Q Consensus 163 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~--l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 240 (862)
| .|.++..|++|+++.|... .+|+ .+.++++..||+..|++.+ +|+.+..+
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~------------------------~lpae~~~~L~~l~vLDLRdNklke--~Pde~clL 274 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE------------------------MLPAEHLKHLNSLLVLDLRDNKLKE--VPDEICLL 274 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH------------------------hhHHHHhcccccceeeecccccccc--CchHHHHh
Confidence 8 7788888888888776532 3444 5677888888888888865 88888888
Q ss_pred CcccEEECcCCCCccccccccCCCCCCEEeeecCC
Q 048786 241 HSLKELYLNRNNFVTLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 241 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 275 (862)
++|++|++++|.++.+|..++++ +|+.|.+.+++
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 88888888888888888888888 88888888876
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=7.3e-25 Score=237.31 Aligned_cols=248 Identities=24% Similarity=0.363 Sum_probs=212.6
Q ss_pred CCCCCCcEEEeecCCCc--ccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCc
Q 048786 2 ASMKDLSDLYLDGTSIT--EVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLS 79 (862)
Q Consensus 2 ~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 79 (862)
+-+|-.|-.++++|.+. .+|+++..++.++.|.|.. +.+..+|+.++.+.+|++|.+++| .+..+-..+..++.||
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhH
Confidence 34677888999999886 8899999999999999988 778899999999999999999996 4555666778889999
Q ss_pred EEEccCccCc--ccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcc-cCCCCcccEEEccC
Q 048786 80 KLYLDGTSIA--EVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDT-LGKVESLEELDVSG 156 (862)
Q Consensus 80 ~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~ 156 (862)
.+.+..|+++ .+|..|..+..|..|+|+.|+ ++..|..+..-+++-.|++++|+ ++.+|.. +.+++.|-.|++++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence 9999998887 789999999999999999976 78889989999999999999854 5566654 56788899999999
Q ss_pred CcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcc
Q 048786 157 TAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSD 236 (862)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~ 236 (862)
|.+..+|+.+..+.+|++|.+++|.... ..+-.+..+.+|+.|++++.+-+-..+|..
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h----------------------fQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNH----------------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhH----------------------HHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 9999999999999999999999886321 122235567788899999988777789999
Q ss_pred cCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCC
Q 048786 237 IDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 237 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 275 (862)
+..+.+|..++++.|++..+|+++-++++|+.|++++++
T Consensus 218 ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 999999999999999999999999999999999999874
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.2e-23 Score=228.08 Aligned_cols=297 Identities=25% Similarity=0.362 Sum_probs=217.7
Q ss_pred CCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCC-CccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEE
Q 048786 3 SMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNL-SSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKL 81 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 81 (862)
.+.+|++|.+.+|++..+...+..++.||.+++.+|+.- ..+|..+.++..|.+|||++ +.+++.|..+.+.+++-.|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEE
Confidence 455667777777777766666666777777776664322 13566666677777777776 3566667776666666677
Q ss_pred EccCccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCC------------------------C-
Q 048786 82 YLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCC------------------------K- 135 (862)
Q Consensus 82 ~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~------------------------~- 135 (862)
+|+.|+|..||.+ +-++..|-.|+|++|+ +..+|..+..+.+|++|.+++|. .
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 7777777666655 3466666666666654 55566656555555555555543 2
Q ss_pred CCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCC
Q 048786 136 LENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTG 214 (862)
Q Consensus 136 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~ 214 (862)
+..+|.++..+.||..++++.|.+..+|..+..+++|+.|++++|...........--.+..+..+.+.. ..+|+ +..
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcK 289 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-TVLPDAVCK 289 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-ccchHHHhh
Confidence 3567888888999999999999999999999999999999999998665433222222233344444444 34555 889
Q ss_pred CCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC---CCCCCcEEe
Q 048786 215 VCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ---IPPNLQFVR 291 (862)
Q Consensus 215 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~ 291 (862)
++.|+.|.+.+|.++-+++|+.++.+.+|+.+..++|.+.-.|++++.+.+|+.|.++++. |..+|+ +.+-|+.|+
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceee
Confidence 9999999999999988899999999999999999999999999999999999999998764 777886 568899999
Q ss_pred ccCCCCceeecC
Q 048786 292 ANGCSSLVTLFG 303 (862)
Q Consensus 292 i~~C~~L~~l~~ 303 (862)
+++.|+|..-|.
T Consensus 369 lreNpnLVMPPK 380 (1255)
T KOG0444|consen 369 LRENPNLVMPPK 380 (1255)
T ss_pred ccCCcCccCCCC
Confidence 999999987663
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=3.3e-21 Score=219.22 Aligned_cols=252 Identities=23% Similarity=0.274 Sum_probs=167.2
Q ss_pred CCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC
Q 048786 6 DLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG 85 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 85 (862)
+|+.|++++|.+..+|..|..+.+|+.|+++. +.+...|.++.++.+|++|+|.+ +.+..+|..+..+++|++|+++.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccch
Confidence 38889999999999998899999999999988 56888888888899999999987 57888899999999999999999
Q ss_pred ccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch
Q 048786 86 TSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS 165 (862)
Q Consensus 86 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 165 (862)
|.+..+|.-+..+..+..+..++|..+..++.. . ++.+++..+.....++..+..++. .|++.+|.+. ...
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~d 194 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLD 194 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhh
Confidence 999999988888888888888887544444432 2 777888877777777777777776 7899998877 334
Q ss_pred hhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccE
Q 048786 166 IFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKE 245 (862)
Q Consensus 166 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 245 (862)
+..+.+|+.|+...+..... ......+..+....+......+ -....+|+.+++++++++. +|+|++.+.+|+.
T Consensus 195 ls~~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSEL---EISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNLSN--LPEWIGACANLEA 268 (1081)
T ss_pred hhhccchhhhhhhhcccceE---EecCcchheeeeccCcceeecc-ccccccceeeecchhhhhc--chHHHHhcccceE
Confidence 55566666666655443210 1111112222222222221111 1112345555555555433 4455555555555
Q ss_pred EECcCCCCccccccccCCCCCCEEeeecC
Q 048786 246 LYLNRNNFVTLPASISGLLNLEELELEDC 274 (862)
Q Consensus 246 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c 274 (862)
+....|.++.+|..+...++|+.|.+.+|
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence 55555555555555555555555555544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=5.5e-19 Score=191.49 Aligned_cols=291 Identities=21% Similarity=0.259 Sum_probs=175.5
Q ss_pred CCCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccch-hhcCCCCCcE
Q 048786 2 ASMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQ-IVASMEDLSK 80 (862)
Q Consensus 2 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~ 80 (862)
-+++||+.+++..|.++.+|...+...||+.|+|.+|..-..-.+.+..++.||.|||+.| .+.++|. .+.+-.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 4567777777777777777766666666777777764433333344566667777777764 3444432 3344456777
Q ss_pred EEccCccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcC
Q 048786 81 LYLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAI 159 (862)
Q Consensus 81 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 159 (862)
|+|++|.|+.+-.. +..+.+|.+|.|+.|+..+--+..|.++++|+.|++..|..-..-.-.|..+++|+.|.+..|.+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 77777777766533 66677777777777664433344566677777777777543222234456666666666666666
Q ss_pred cCCC-chhhccCCccEEEccCCCCCCCcccccccc-ccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCC-c
Q 048786 160 RRPT-SSIFLMKNLRSLYFSGCNEPPASASWHLHL-PFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIP-S 235 (862)
Q Consensus 160 ~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp-~ 235 (862)
..+. ..+..+.++++|+|..|+.......|.+.+ .++.+..+.+.+...-++ +...++|++|+|++|+++. ++ .
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~--l~~~ 335 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR--LDEG 335 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc--CChh
Confidence 6553 234456666666666666554444443322 244444555544433333 5666677777777776653 22 1
Q ss_pred c------------------------cCCCCcccEEECcCCCCcc-c---cccccCCCCCCEEeeecCCCCCcCCC----C
Q 048786 236 D------------------------IDNLHSLKELYLNRNNFVT-L---PASISGLLNLEELELEDCKRLQSLPQ----I 283 (862)
Q Consensus 236 ~------------------------l~~l~~L~~L~L~~n~l~~-l---p~~l~~l~~L~~L~L~~c~~L~~lp~----l 283 (862)
. +..+++|++|+|+.|.+.. + ...+..+++|++|.+.+++ ++++|. .
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsg 414 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSG 414 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhcc
Confidence 2 3345677777777776551 1 2245668888888888864 888874 4
Q ss_pred CCCCcEEeccCCC
Q 048786 284 PPNLQFVRANGCS 296 (862)
Q Consensus 284 p~sL~~L~i~~C~ 296 (862)
.++|+.|++.+.+
T Consensus 415 l~~LE~LdL~~Na 427 (873)
T KOG4194|consen 415 LEALEHLDLGDNA 427 (873)
T ss_pred CcccceecCCCCc
Confidence 5788888876654
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.5e-18 Score=188.18 Aligned_cols=288 Identities=26% Similarity=0.261 Sum_probs=173.4
Q ss_pred CCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 4 MKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
++.||+|||+.|.|.++|. ++..-.++++|+|++|...+.-...|..+.+|-+|.|++|...+--+..|.++++|+.|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 3445555555555555542 344445555666655433322223355555566666665433322233444466666666
Q ss_pred ccCccCccc-CccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 83 LDGTSIAEV-PSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 83 L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
|..|.|..+ ...+..|++|+.|.+..|....--...|..+.++++|+++.|+....-..++-.++.|+.|++++|.+..
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 666655544 2335555555555555544332223345666777777777765554444566778888888888888775
Q ss_pred C-CchhhccCCccEEEccCCCCCCCcccc-ccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCC---Cc
Q 048786 162 P-TSSIFLMKNLRSLYFSGCNEPPASASW-HLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAI---PS 235 (862)
Q Consensus 162 ~-~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~l---p~ 235 (862)
+ +......++|+.|+|+.|......+.. .....+..+...++........ +.++++|++|||++|.++ ..+ ..
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls-~~IEDaa~ 386 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS-WCIEDAAV 386 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE-EEEecchh
Confidence 5 455666778888888887765433222 2222344444444443322222 778899999999999764 222 23
Q ss_pred ccCCCCcccEEECcCCCCccccc-cccCCCCCCEEeeecCCCCCcCCCC--CCCCcEEec
Q 048786 236 DIDNLHSLKELYLNRNNFVTLPA-SISGLLNLEELELEDCKRLQSLPQI--PPNLQFVRA 292 (862)
Q Consensus 236 ~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~i 292 (862)
.+..+++|+.|.+.||++..+|. .+..+++|+.|++.++.-...-|+. |-.|++|.+
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence 45679999999999999999986 7889999999999998744333432 235555544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=2.7e-18 Score=195.85 Aligned_cols=140 Identities=26% Similarity=0.346 Sum_probs=96.7
Q ss_pred hcCCCchhchhhhhccccCcEEecCCCccCcccCc---------------------------------------------
Q 048786 665 SDGTDIRELSLAIELLFGLVQLTLNGCKNLERLPR--------------------------------------------- 699 (862)
Q Consensus 665 ~~~~~~~~lp~~~~~~~~L~~L~l~~c~~l~~lp~--------------------------------------------- 699 (862)
....+++-+|...+.+..|++|+++. .+|.++|+
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 34555666776677788999999965 34555555
Q ss_pred -----CccccCcccEEecCCCCCCccCccc-ccCCCCccEEEeeCccccccCchhhccCcCcEEecCCCcccccCCccCC
Q 048786 700 -----TISALKYLSTLNLSGLSKFREFPEI-TSSRDQLLEIHLEGTAIRGLPASIELLSGNILSNLKDCKNLKSLPSTIN 773 (862)
Q Consensus 700 -----~~~~l~~L~~L~l~~c~~l~~~p~~-~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~c~~L~~LP~~i~ 773 (862)
.+.++++||+|++++. .|.+||.. +.+++.|++|+|+|++++.||..+-++..|++|...+.. |.+.| .+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~ 449 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELA 449 (1081)
T ss_pred ccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhh
Confidence 2345666777777773 67777763 567777888888888888888888888888888777765 77788 478
Q ss_pred CCCCcCEEccCCCCCCcc--cccccCCccccceecccCC
Q 048786 774 GLRSLRMMYPSGCSKLKN--VTETLGKVESLEVRLSSWN 810 (862)
Q Consensus 774 ~L~sL~~L~i~~C~~l~~--lp~~~~~l~~L~~~~~~~~ 810 (862)
+|+.|+.+|++ |..|+. +|+...+ ..|++++.+.|
T Consensus 450 ~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 450 QLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCC
Confidence 88888888887 345653 3444433 56676666555
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=7.4e-15 Score=174.58 Aligned_cols=228 Identities=21% Similarity=0.369 Sum_probs=165.3
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEcc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~ 84 (862)
.+..+|++++++++.+|..+. ++|+.|++++| .++.+|..+. .+|++|++++| .++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 356789999988988887664 58999999885 5778887654 58999999986 4667787654 478999999
Q ss_pred CccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc
Q 048786 85 GTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS 164 (862)
Q Consensus 85 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 164 (862)
+|.+..+|..+. .+|+.|++++|+ +..+|..+. ++|+.|++++|. +..+|..+. .+|+.|++++|.+..+|.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCc
Confidence 999988887764 578999998764 556777554 578888888864 455665443 478888888888887775
Q ss_pred hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCccc
Q 048786 165 SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLK 244 (862)
Q Consensus 165 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 244 (862)
.+ .++|+.|++.+|.... +|. .-.++|+.|++++|++.. +|..+. ++|+
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt~------------------------LP~-~l~~sL~~L~Ls~N~L~~--LP~~lp--~~L~ 370 (754)
T PRK15370 322 TL--PPGLKTLEAGENALTS------------------------LPA-SLPPELQVLDVSKNQITV--LPETLP--PTIT 370 (754)
T ss_pred cc--cccceeccccCCcccc------------------------CCh-hhcCcccEEECCCCCCCc--CChhhc--CCcC
Confidence 44 3678888888775432 121 012578888888888753 665443 6788
Q ss_pred EEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC
Q 048786 245 ELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ 282 (862)
Q Consensus 245 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~ 282 (862)
.|+|++|++..+|..+. ..|+.|++++|. +..+|+
T Consensus 371 ~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 371 TLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPE 405 (754)
T ss_pred EEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCch
Confidence 88888888888887654 367888888864 566665
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=3.3e-14 Score=168.01 Aligned_cols=237 Identities=26% Similarity=0.333 Sum_probs=165.2
Q ss_pred CCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC
Q 048786 6 DLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG 85 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 85 (862)
+-..|++++++++.+|..+. .+|+.|++.+| .++.+|.. .++|++|++++| .++.+|.. .++|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 35678999999999998776 48999999984 57778863 588999999996 56677754 35889999999
Q ss_pred ccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch
Q 048786 86 TSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS 165 (862)
Q Consensus 86 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 165 (862)
|.+..+|.. ..+|+.|++++|+ +..+|.. .++|+.|++++|. +..+|.. ..+|+.|++++|.++.+|..
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCcccccccc
Confidence 999888864 3678889999875 5667753 4789999999874 4455542 34678889999999887752
Q ss_pred hhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccE
Q 048786 166 IFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKE 245 (862)
Q Consensus 166 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 245 (862)
..+|+.|++++|..... |.+ .++|+.|++++|.+.. +|.. ..+|+.
T Consensus 341 ---p~~Lq~LdLS~N~Ls~L------------------------P~l--p~~L~~L~Ls~N~L~~--LP~l---~~~L~~ 386 (788)
T PRK15387 341 ---PSGLQELSVSDNQLASL------------------------PTL--PSELYKLWAYNNRLTS--LPAL---PSGLKE 386 (788)
T ss_pred ---ccccceEecCCCccCCC------------------------CCC--Ccccceehhhcccccc--Cccc---ccccce
Confidence 35899999998875432 211 2356666666666643 4432 245666
Q ss_pred EECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCCCCCCcEEeccCCCCceeec
Q 048786 246 LYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQIPPNLQFVRANGCSSLVTLF 302 (862)
Q Consensus 246 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~ 302 (862)
|++++|.++.+|.. .++|+.|++++|. ++.+|.+|.+|+.|++.++ .++++|
T Consensus 387 LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP 438 (788)
T PRK15387 387 LIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLP 438 (788)
T ss_pred EEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccC
Confidence 66666666666643 2456666666654 5666666666666666553 345554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=2e-14 Score=170.92 Aligned_cols=224 Identities=23% Similarity=0.368 Sum_probs=178.7
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEcc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~ 84 (862)
++|+.|+|++|+++.+|..+. .+|++|++++| .++.+|..+. .+|+.|+|++|. +..+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECc
Confidence 469999999999999998765 59999999986 4778887654 589999999975 567888775 489999999
Q ss_pred CccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc
Q 048786 85 GTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS 164 (862)
Q Consensus 85 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 164 (862)
+|.+..+|..+. ++|+.|++++|+ +..+|..+. ++|+.|++++|.. ..+|..+ .++|+.|++++|.++.+|.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSL-TALPETL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcc-ccCCccc--cccceeccccCCccccCCh
Confidence 999999998764 589999999985 566776543 4799999998654 4566544 3689999999999999887
Q ss_pred hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCccc
Q 048786 165 SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLK 244 (862)
Q Consensus 165 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 244 (862)
.+. ++|+.|++++|.... +|. .-.++|+.|+|++|.+.. +|..+. .+|+
T Consensus 343 ~l~--~sL~~L~Ls~N~L~~------------------------LP~-~lp~~L~~LdLs~N~Lt~--LP~~l~--~sL~ 391 (754)
T PRK15370 343 SLP--PELQVLDVSKNQITV------------------------LPE-TLPPTITTLDVSRNALTN--LPENLP--AALQ 391 (754)
T ss_pred hhc--CcccEEECCCCCCCc------------------------CCh-hhcCCcCEEECCCCcCCC--CCHhHH--HHHH
Confidence 663 799999999987432 121 012589999999999874 776654 4799
Q ss_pred EEECcCCCCccccccc----cCCCCCCEEeeecCC
Q 048786 245 ELYLNRNNFVTLPASI----SGLLNLEELELEDCK 275 (862)
Q Consensus 245 ~L~L~~n~l~~lp~~l----~~l~~L~~L~L~~c~ 275 (862)
.|++++|++..+|..+ +.++.+..|++.+++
T Consensus 392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 9999999999887754 445788899998886
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=7.6e-14 Score=164.97 Aligned_cols=231 Identities=26% Similarity=0.344 Sum_probs=153.3
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEcc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~ 84 (862)
++|+.|++.+|+++.+|.. +++|++|++++| .++.+|.. .++|++|++++| .+..+|... .+|+.|+++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN-PLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCC-chhhhhhch---hhcCEEECc
Confidence 3689999999999999853 689999999996 67778863 468999999996 466677643 568899999
Q ss_pred CccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc
Q 048786 85 GTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS 164 (862)
Q Consensus 85 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 164 (862)
+|++..+|.. +++|+.|++++|+ +..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.++.+|.
T Consensus 291 ~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 291 GNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred CCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---ccccceEecCCCccCCCCC
Confidence 9999999863 4789999999985 5566653 2457788888864 4456642 2579999999999998876
Q ss_pred hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCccc
Q 048786 165 SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLK 244 (862)
Q Consensus 165 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 244 (862)
. ..+|+.|++.+|..... |.+ ..+|+.|++++|.+.. +|.. .++|+
T Consensus 360 l---p~~L~~L~Ls~N~L~~L------------------------P~l--~~~L~~LdLs~N~Lt~--LP~l---~s~L~ 405 (788)
T PRK15387 360 L---PSELYKLWAYNNRLTSL------------------------PAL--PSGLKELIVSGNRLTS--LPVL---PSELK 405 (788)
T ss_pred C---CcccceehhhccccccC------------------------ccc--ccccceEEecCCcccC--CCCc---ccCCC
Confidence 3 45788888887764321 111 1245555555555542 3322 23455
Q ss_pred EEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCC---CCCCcEEeccCC
Q 048786 245 ELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQI---PPNLQFVRANGC 295 (862)
Q Consensus 245 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C 295 (862)
.|++++|.+..+|.. ..+|+.|++++|. ++.+|.- .++|+.|++.++
T Consensus 406 ~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 406 ELMVSGNRLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred EEEccCCcCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCC
Confidence 555555555555532 2244555555543 4444431 234444444443
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=3e-15 Score=139.28 Aligned_cols=84 Identities=30% Similarity=0.450 Sum_probs=48.5
Q ss_pred CCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEE
Q 048786 49 SSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTL 128 (862)
Q Consensus 49 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 128 (862)
..+.+.+.|.|++ ++++.+|..++.+.+|+.|++.+|+|+++|.++..+++|+.|++..|+ +..+|..++.++.|+.|
T Consensus 30 f~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhh
Confidence 3355555666666 355556666666666666666666666666666666666666665433 44455555555555555
Q ss_pred EecCCC
Q 048786 129 NLSGCC 134 (862)
Q Consensus 129 ~L~~c~ 134 (862)
++..|+
T Consensus 108 dltynn 113 (264)
T KOG0617|consen 108 DLTYNN 113 (264)
T ss_pred hccccc
Confidence 555433
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=2.1e-14 Score=157.56 Aligned_cols=248 Identities=23% Similarity=0.204 Sum_probs=137.9
Q ss_pred EEeecCCCc--ccCccccCCCCCcEEEEeCCCCC----CccccccCCCCCCCEEEeeCCCCC------CccchhhcCCCC
Q 048786 10 LYLDGTSIT--EVPSSIELLTGLELLTLKGCKNL----SSLPVTISSLKCLRTLELSGCSKL------KKFPQIVASMED 77 (862)
Q Consensus 10 L~L~~~~i~--~lp~~i~~L~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~L~~c~~l------~~lp~~i~~l~~ 77 (862)
|+|.++.++ .....+..+.+|++|++++|... ..++..+...++|++|+++++... ..++..+.++++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555443 33444555666777777765431 234444555666777777665432 123455666777
Q ss_pred CcEEEccCccCcc-cCccCCCC---CCCCEEEccCCCCcc----cccccccCC-CCCCEEEecCCCCCC----CCCcccC
Q 048786 78 LSKLYLDGTSIAE-VPSSIELL---PGLELLYLNECKNLV----RLPSSINGL-KSLKTLNLSGCCKLE----NVPDTLG 144 (862)
Q Consensus 78 L~~L~L~~~~i~~-lp~~i~~L---~~L~~L~L~~~~~l~----~lp~~l~~l-~~L~~L~L~~c~~l~----~lp~~l~ 144 (862)
|++|+++++.+.. .+..+..+ ++|++|++++|.... .+...+..+ ++|++|++++|.... .++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 7777777776652 22333323 347777777765431 122334455 677777777766442 2333455
Q ss_pred CCCcccEEEccCCcCcC-----CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCcc
Q 048786 145 KVESLEELDVSGTAIRR-----PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLT 219 (862)
Q Consensus 145 ~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~ 219 (862)
.+++|++|++++|.+.. ++..+...++|+.|++++|........ .....+..+++|+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~------------------~l~~~~~~~~~L~ 224 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS------------------ALAETLASLKSLE 224 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH------------------HHHHHhcccCCCC
Confidence 56677777777776652 223334455777777777653211000 0011144567777
Q ss_pred EEEccCCCCCCCCCCcccC----CCCcccEEECcCCCCc-----cccccccCCCCCCEEeeecCC
Q 048786 220 KLDLSDCGLGEAAIPSDID----NLHSLKELYLNRNNFV-----TLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 220 ~L~Ls~~~l~~~~lp~~l~----~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~ 275 (862)
+|++++|.+.+..+..... ..+.|++|++++|.++ .+...+..+++|+++++++|.
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 7777777765422211111 2367777777777764 344455566777777777765
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=4.4e-15 Score=138.24 Aligned_cols=165 Identities=24% Similarity=0.361 Sum_probs=120.7
Q ss_pred CcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCC
Q 048786 17 ITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIE 96 (862)
Q Consensus 17 i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~ 96 (862)
+.++| .+-++.++..|.|++| .++.+|..+..+.+|+.|++.+ +.++++|..+..+++|++|+++-|.+..+|.++|
T Consensus 23 f~~~~-gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELP-GLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred Hhhcc-cccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 33444 3445667777777773 4666676777778888888777 3567777788888888888887777777888888
Q ss_pred CCCCCCEEEccCCCCc-ccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEE
Q 048786 97 LLPGLELLYLNECKNL-VRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSL 175 (862)
Q Consensus 97 ~L~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 175 (862)
.++.|+.|++.+|..- ..+|..+-.+..|+.|++.. +..+.+|..++++++|+.|.+.+|.+.++|..++.+..|++|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 8888888888765533 34777777777777777777 445677777888888888888888888888888888888888
Q ss_pred EccCCCCCCC
Q 048786 176 YFSGCNEPPA 185 (862)
Q Consensus 176 ~L~~~~~~~~ 185 (862)
++.+++....
T Consensus 179 hiqgnrl~vl 188 (264)
T KOG0617|consen 179 HIQGNRLTVL 188 (264)
T ss_pred hcccceeeec
Confidence 8888775443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=9.3e-14 Score=152.45 Aligned_cols=255 Identities=24% Similarity=0.235 Sum_probs=148.9
Q ss_pred CCCCcEEEeecCCCc-----ccCccccCCCCCcEEEEeCCCCC------CccccccCCCCCCCEEEeeCCCCCCccchhh
Q 048786 4 MKDLSDLYLDGTSIT-----EVPSSIELLTGLELLTLKGCKNL------SSLPVTISSLKCLRTLELSGCSKLKKFPQIV 72 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~Ls~c~~l------~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i 72 (862)
+++|++|+++++.++ .++..+...++|++++++++... ..++..+..+++|+.|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 455777777777763 45556666777777777765432 1233445567778888887776554555555
Q ss_pred cCCCC---CcEEEccCccCc-----ccCccCCCC-CCCCEEEccCCCCcc----cccccccCCCCCCEEEecCCCCCC--
Q 048786 73 ASMED---LSKLYLDGTSIA-----EVPSSIELL-PGLELLYLNECKNLV----RLPSSINGLKSLKTLNLSGCCKLE-- 137 (862)
Q Consensus 73 ~~l~~---L~~L~L~~~~i~-----~lp~~i~~L-~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~c~~l~-- 137 (862)
..+.+ |++|+++++.+. .+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 44444 777887777665 223345555 777778877776442 234445566777778777765442
Q ss_pred --CCCcccCCCCcccEEEccCCcCcC-----CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCcccccc
Q 048786 138 --NVPDTLGKVESLEELDVSGTAIRR-----PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLP 210 (862)
Q Consensus 138 --~lp~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp 210 (862)
.++..+..+++|+.|++++|.+.. +...+..+++|+.|++++|...... ... ....+
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~-~~~--------------l~~~~- 245 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG-AAA--------------LASAL- 245 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH-HHH--------------HHHHH-
Confidence 233344555677778877776652 2334455677777777776532100 000 00000
Q ss_pred CcCCCCCccEEEccCCCCCCCC---CCcccCCCCcccEEECcCCCCcc-----ccccccCC-CCCCEEeeecCC
Q 048786 211 SLTGVCSLTKLDLSDCGLGEAA---IPSDIDNLHSLKELYLNRNNFVT-----LPASISGL-LNLEELELEDCK 275 (862)
Q Consensus 211 ~l~~l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l-~~L~~L~L~~c~ 275 (862)
....+.|++|++++|.+++.. +...+..+++|+.+++++|.+.. +...+... +.|+.|++.+++
T Consensus 246 -~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 246 -LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred -hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 012467777888777765322 23344555777778887777762 22233444 567777766653
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.34 E-value=1e-12 Score=158.85 Aligned_cols=255 Identities=25% Similarity=0.337 Sum_probs=175.6
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCC-CCccccc-cCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKN-LSSLPVT-ISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~-l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
...|.+.+-++.+..++.... .++|+.|-+.++.. +..++.. |..++.|++|||++|..+.++|..++++.+||+|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 456888888888888876644 44899999998763 5555544 67799999999999999999999999999999999
Q ss_pred ccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCC--CCCCcccCCCCcccEEEccCCcCc
Q 048786 83 LDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKL--ENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 83 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l--~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
++++.+..+|.++++|+.|.+|++..+..+..+|..+..+++|++|.+..-... ...-.++..+.+|+.+.+.....
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 999999999999999999999999998888888887778999999999774311 11222344555555555533322
Q ss_pred CCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcc----
Q 048786 161 RPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSD---- 236 (862)
Q Consensus 161 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~---- 236 (862)
.+...+.....|.++...- ....+......+.+..+.+|+.|.+.+|.+.+..+ .+
T Consensus 681 ~~~e~l~~~~~L~~~~~~l-------------------~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~ 740 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSL-------------------SIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESL 740 (889)
T ss_pred HhHhhhhhhHHHHHHhHhh-------------------hhcccccceeecccccccCcceEEEEcCCCchhhc-cccccc
Confidence 1111112222222111110 00011222334447778888999998888754221 11
Q ss_pred -cCC-CCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCC
Q 048786 237 -IDN-LHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLP 281 (862)
Q Consensus 237 -l~~-l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp 281 (862)
... ++++..+.+.++.....+.|....++|+.|.+.+|+.++.+.
T Consensus 741 ~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 741 IVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred chhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 111 456666666667666677777778888888888888777654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=3.3e-13 Score=141.29 Aligned_cols=271 Identities=21% Similarity=0.238 Sum_probs=161.4
Q ss_pred eecCCCcccCccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC-ccCc
Q 048786 12 LDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG-TSIA 89 (862)
Q Consensus 12 L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~-~~i~ 89 (862)
-++.+++++|..+. ..-..++|.. +.++.+|+ .|+.+++||.|||++|.....-|..|.++..|-.|-+.+ |+|+
T Consensus 53 Cr~~GL~eVP~~LP--~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP--PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcccCcccCC--CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34456666665443 2344566666 34555654 467777777777777666556677777777777766655 6777
Q ss_pred ccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCc-ccCCCCcccEEEccCCcCcC------
Q 048786 90 EVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPD-TLGKVESLEELDVSGTAIRR------ 161 (862)
Q Consensus 90 ~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~------ 161 (862)
++|.. ++.|..|+.|.+.-|+.--.....+..+++|..|.+..+. ...++. .+..+.+++.+.+..|.+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccch
Confidence 77755 6677777777776655444445556677777777776643 333333 56666777777666655321
Q ss_pred -------CCchhhccCCccEEEccCCCCCCCcccccccc--ccccccCCCCCccccccC--cCCCCCccEEEccCCCCCC
Q 048786 162 -------PTSSIFLMKNLRSLYFSGCNEPPASASWHLHL--PFNLLGKSSCPVALMLPS--LTGVCSLTKLDLSDCGLGE 230 (862)
Q Consensus 162 -------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~--~l~~l~~~~~~~~~~lp~--l~~l~~L~~L~Ls~~~l~~ 230 (862)
.|..++......-..+...+.....+.-.... .+.......+......|. +..+++|++|++++|.++.
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 11122222222222222111111000000000 011111222323334444 8899999999999999974
Q ss_pred CCCCcccCCCCcccEEECcCCCCccccc-cccCCCCCCEEeeecCCCCCcCCCCCCCC
Q 048786 231 AAIPSDIDNLHSLKELYLNRNNFVTLPA-SISGLLNLEELELEDCKRLQSLPQIPPNL 287 (862)
Q Consensus 231 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~L~~lp~lp~sL 287 (862)
.-+.++.....+++|.|..|++..+.. .+.++..|+.|++.+++--..-|..+..+
T Consensus 289 -i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 289 -IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred -hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 346788999999999999999987655 56789999999999987444445544433
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=1e-11 Score=150.17 Aligned_cols=179 Identities=27% Similarity=0.336 Sum_probs=131.2
Q ss_pred CCCCCcEEEeecCC--CcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCc
Q 048786 3 SMKDLSDLYLDGTS--ITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLS 79 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~--i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 79 (862)
+.++|++|-+.++. +..++. .|..+++|++|||++|..+..+|+.++.+.+||+|++++ ..+..+|..+++++.|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 45689999999986 677764 478899999999999999999999999999999999999 57889999999999999
Q ss_pred EEEccCccCccc-CccCCCCCCCCEEEccCCC--CcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCccc----EE
Q 048786 80 KLYLDGTSIAEV-PSSIELLPGLELLYLNECK--NLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLE----EL 152 (862)
Q Consensus 80 ~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~--~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~----~L 152 (862)
+|++..+.-... |..+..+.+|++|.+.... .-...-..+.++.+|+.+.+..... .+.+.+..++.|. .+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhh
Confidence 999998865544 4445569999999987643 1111223345666666666654332 1222233333333 33
Q ss_pred EccCCcCcCCCchhhccCCccEEEccCCCCCC
Q 048786 153 DVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPP 184 (862)
Q Consensus 153 ~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 184 (862)
.+.++.....+..+..+.+|+.|.+.+|....
T Consensus 700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 700 SIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhcccccceeecccccccCcceEEEEcCCCch
Confidence 43445555667778889999999999988653
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=1.3e-12 Score=137.01 Aligned_cols=248 Identities=20% Similarity=0.218 Sum_probs=139.7
Q ss_pred CCCCccccccCCCCCCCEEEeeCCCCCCcc-chhhcCCCCCcEEEccCccCccc-CccCCCCCCCCEEEccCCCCccccc
Q 048786 39 KNLSSLPVTISSLKCLRTLELSGCSKLKKF-PQIVASMEDLSKLYLDGTSIAEV-PSSIELLPGLELLYLNECKNLVRLP 116 (862)
Q Consensus 39 ~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp 116 (862)
..++.+|..+. ..-..+.|..|. ++.+ |.+|+.+++||.|+|++|.|+.| |..+..+.+|..|-+.+++.++++|
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 45666666553 345566677653 4444 45677788888888888888766 4457777777777777766677777
Q ss_pred c-cccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc-hhhccCCccEEEccCCCCCCC------c--
Q 048786 117 S-SINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS-SIFLMKNLRSLYFSGCNEPPA------S-- 186 (862)
Q Consensus 117 ~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~------~-- 186 (862)
. .|+++.+|+.|.+.-|...-...+.+..+++|..|.+.+|.+..++. .+..+..++.+++..+....+ .
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 5 36777777777776655444445567777778888888777776655 666677777777665541110 0
Q ss_pred -----ccc---ccccccccccCCCCCccccccC---cCCCCCccEEEccCCCCCCCCCC-cccCCCCcccEEECcCCCCc
Q 048786 187 -----ASW---HLHLPFNLLGKSSCPVALMLPS---LTGVCSLTKLDLSDCGLGEAAIP-SDIDNLHSLKELYLNRNNFV 254 (862)
Q Consensus 187 -----~~~---~~~~~l~~l~~~~~~~~~~lp~---l~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~~L~~L~L~~n~l~ 254 (862)
... ....+....... ...+++ .....++.+=-.+.|... ...| ..+..+++|++|+|++|+++
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~R----i~q~~a~kf~c~~esl~s~~~~~d~~d-~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKR----INQEDARKFLCSLESLPSRLSSEDFPD-SICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred HhhchhhcccceecchHHHHHHH----hcccchhhhhhhHHhHHHhhccccCcC-CcChHHHHhhcccceEeccCCCccc
Confidence 000 000000000000 000111 001111111111122111 1122 23566778888888888877
Q ss_pred ccc-ccccCCCCCCEEeeecCCCCCcCCC----CCCCCcEEeccCC
Q 048786 255 TLP-ASISGLLNLEELELEDCKRLQSLPQ----IPPNLQFVRANGC 295 (862)
Q Consensus 255 ~lp-~~l~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C 295 (862)
.+- .++.....++.|.+.+++ ++.+.. -...|+.|++.+.
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCC
Confidence 663 477777788888887764 444432 2356666666554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=8.6e-11 Score=128.65 Aligned_cols=189 Identities=28% Similarity=0.427 Sum_probs=119.2
Q ss_pred EEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCC
Q 048786 56 TLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCK 135 (862)
Q Consensus 56 ~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~ 135 (862)
..||+.| ....+|..+..+..|+.+.++.|.+..+|..+.++..|.+|+++.|+ +..+|..++.++ |+.|.+++ ++
T Consensus 79 ~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nk 154 (722)
T KOG0532|consen 79 FADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NK 154 (722)
T ss_pred hhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-Cc
Confidence 3444442 34445555555555555555555555555555555555555555544 344455455443 55565554 44
Q ss_pred CCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCC
Q 048786 136 LENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTG 214 (862)
Q Consensus 136 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~ 214 (862)
++.+|+.++....|..|+.+.|.+..+|+.++.+.+|+.|.+..|.... +|. +..
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~------------------------lp~El~~ 210 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED------------------------LPEELCS 210 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh------------------------CCHHHhC
Confidence 5566666666666667777777777777777777777766666554321 111 222
Q ss_pred CCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccc---cCCCCCCEEeeecCC
Q 048786 215 VCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASI---SGLLNLEELELEDCK 275 (862)
Q Consensus 215 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l---~~l~~L~~L~L~~c~ 275 (862)
+ .|..||++.|++.. +|..+..++.|++|.|.+|.+.+-|..| |...-.++|++..|+
T Consensus 211 L-pLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-ceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 2 37888999888854 8889999999999999999998888755 445556788888874
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.2e-10 Score=118.21 Aligned_cols=204 Identities=24% Similarity=0.215 Sum_probs=97.3
Q ss_pred CCCCCcEEEEeCCCCCCccc--cccCCCCCCCEEEeeCCCC--CCccchhhcCCCCCcEEEccCccCcccCcc--CCCCC
Q 048786 26 LLTGLELLTLKGCKNLSSLP--VTISSLKCLRTLELSGCSK--LKKFPQIVASMEDLSKLYLDGTSIAEVPSS--IELLP 99 (862)
Q Consensus 26 ~L~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~L~~c~~--l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L~ 99 (862)
++.+|+.+.|.++ .+...+ .....+++++.|||++|-. ...+-.....+++|+.|+++.|.+....++ -..++
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4556666666553 233333 1344556666666665421 122334445555555555555554432222 12344
Q ss_pred CCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCc-CcCCCchhhccCCccEEEcc
Q 048786 100 GLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTA-IRRPTSSIFLMKNLRSLYFS 178 (862)
Q Consensus 100 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~L~ 178 (862)
.|+.|.++.|.... ..+...+..+++|+.|.+.+|. +.........+..|+.|+|+
T Consensus 198 ~lK~L~l~~CGls~-----------------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW-----------------------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hhheEEeccCCCCH-----------------------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 44444444443221 1122222334445555554442 11112222334455555555
Q ss_pred CCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcc-----cCCCCcccEEECcCCCC
Q 048786 179 GCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSD-----IDNLHSLKELYLNRNNF 253 (862)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~-----l~~l~~L~~L~L~~n~l 253 (862)
+|..... ...+....++.|+.|+++.|++.+...|+. ...+++|++|++..|++
T Consensus 255 ~N~li~~---------------------~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 255 NNNLIDF---------------------DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred CCccccc---------------------ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5543321 112224556666666666666665555554 34567777777777777
Q ss_pred ccccc--cccCCCCCCEEeeecC
Q 048786 254 VTLPA--SISGLLNLEELELEDC 274 (862)
Q Consensus 254 ~~lp~--~l~~l~~L~~L~L~~c 274 (862)
...+. .+..+++|+.|.+..+
T Consensus 314 ~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 314 RDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccccchhhccchhhhhhcccc
Confidence 55442 3444556666655443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=7.4e-09 Score=117.29 Aligned_cols=197 Identities=32% Similarity=0.473 Sum_probs=147.4
Q ss_pred EEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCC-CCCEEEccCCCCcccccccccCCCCCCEEEecCCC
Q 048786 56 TLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLP-GLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCC 134 (862)
Q Consensus 56 ~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~ 134 (862)
.+++.++. ...-+..+..+..++.|++.++.+.+++...+.+. +|+.|++++++ +..+|..++.+++|+.|+++.|.
T Consensus 97 ~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNR-LRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccc-cccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 46666543 22334445556778888888888888888888885 88888888865 56666668888888888888854
Q ss_pred CCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCC
Q 048786 135 KLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTG 214 (862)
Q Consensus 135 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~ 214 (862)
+..+|...+..++|+.|++++|.+..+|..+.....|++|.+.++... ..+..+..
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-----------------------~~~~~~~~ 230 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-----------------------ELLSSLSN 230 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-----------------------ecchhhhh
Confidence 555666666788888899999988888887777777888888887421 12222566
Q ss_pred CCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCC
Q 048786 215 VCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLP 281 (862)
Q Consensus 215 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp 281 (862)
+.++..|.+.++.+.. ++..++.+++++.|++++|.++.++. ++.+.+++.|+++++.....+|
T Consensus 231 ~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 231 LKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccCCceeee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 6777778888887653 47778888899999999999998887 8889999999999877554444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=4.2e-09 Score=119.25 Aligned_cols=154 Identities=28% Similarity=0.412 Sum_probs=74.6
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCCCC-CCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCC
Q 048786 24 IELLTGLELLTLKGCKNLSSLPVTISSLK-CLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLE 102 (862)
Q Consensus 24 i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 102 (862)
+..++++..|++.+ ..+..+|.....+. +|+.|+++++ .+..+|..++.+++|+.|+++.|.+.++|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 33444555555544 33444444444342 5555555552 344444445555555555555555555555444555555
Q ss_pred EEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCC
Q 048786 103 LLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCN 181 (862)
Q Consensus 103 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 181 (862)
.|++++++ +..+|..+.....|++|.++++. ....+..+..+.++..+.+.+|.+..++..+..+++++.|++.+|.
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 55555543 34444443344445555555432 2223334444555555555555555445555555555555555544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=2.1e-10 Score=125.63 Aligned_cols=173 Identities=26% Similarity=0.380 Sum_probs=132.7
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCcc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTS 87 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~ 87 (862)
...+++.|.+.++|..+..+..|+.+.|.. +.+..+|..++++..|.+|+|+.| .+..+|..+..++ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc
Confidence 455677778888888777777788887777 456777888888888888888874 5667777777765 7888888888
Q ss_pred CcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhh
Q 048786 88 IAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIF 167 (862)
Q Consensus 88 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~ 167 (862)
++.+|+.++.+..|..|+.+.|. +..+|+.++.+.+|+.|.+..| .+..+|+++..+ .|..||++.|.+..+|..+.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecccCceeecchhhh
Confidence 88888888888888888888765 5677777888888888888774 455677777744 47788888888888888888
Q ss_pred ccCCccEEEccCCCCCCCc
Q 048786 168 LMKNLRSLYFSGCNEPPAS 186 (862)
Q Consensus 168 ~l~~L~~L~L~~~~~~~~~ 186 (862)
.++.|++|-|.+|....++
T Consensus 232 ~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhheeeeeccCCCCCCh
Confidence 8888888888888765543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.4e-09 Score=114.32 Aligned_cols=197 Identities=19% Similarity=0.222 Sum_probs=121.8
Q ss_pred cCCCCCcEEEccCccCcccCc--cCCCCCCCCEEEccCCCCc--ccccccccCCCCCCEEEecCCCCCCCCCc-ccCCCC
Q 048786 73 ASMEDLSKLYLDGTSIAEVPS--SIELLPGLELLYLNECKNL--VRLPSSINGLKSLKTLNLSGCCKLENVPD-TLGKVE 147 (862)
Q Consensus 73 ~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~ 147 (862)
.++++|+...|.++.+...+. -...+++++.|+|+.|-.- ..+......+++|+.|+++.|....-... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 344555555555555544432 3445555666665553211 11222234566666666666543211111 112567
Q ss_pred cccEEEccCCcCc--CCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccC
Q 048786 148 SLEELDVSGTAIR--RPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSD 225 (862)
Q Consensus 148 ~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~ 225 (862)
+|+.|.++.|.++ .+...+..+|+|+.|.+..|...... --....+..|++|+|++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~----------------------~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK----------------------ATSTKILQTLQELDLSN 255 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee----------------------cchhhhhhHHhhccccC
Confidence 8999999999887 34445567899999999998532110 00133456799999999
Q ss_pred CCCCCCCCCcccCCCCcccEEECcCCCCcc--cccc-----ccCCCCCCEEeeecCCCCCcCCC-----CCCCCcEEec
Q 048786 226 CGLGEAAIPSDIDNLHSLKELYLNRNNFVT--LPAS-----ISGLLNLEELELEDCKRLQSLPQ-----IPPNLQFVRA 292 (862)
Q Consensus 226 ~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~--lp~~-----l~~l~~L~~L~L~~c~~L~~lp~-----lp~sL~~L~i 292 (862)
|++.+...-...+.++.|..|+++.+.+.+ +|+. ...+++|++|++.+++ +..++. ..++|+.|.+
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhc
Confidence 998763333567889999999999998874 4554 4679999999999987 444443 2356666554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=2.9e-09 Score=108.10 Aligned_cols=225 Identities=23% Similarity=0.250 Sum_probs=122.8
Q ss_pred CCCCCcEEEEeCCC--------CCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCC
Q 048786 26 LLTGLELLTLKGCK--------NLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIEL 97 (862)
Q Consensus 26 ~L~~L~~L~Ls~c~--------~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~ 97 (862)
.+..|.+|.+++-. .-..+|-.+.-+++|+.+.++.|.. +.+-.....-+.|+.+...++.+...|.-+ .
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-p 257 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLL-P 257 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeecCchhheeeeeccccccccccc-c
Confidence 35567777776521 1123444456677888888888742 222222233356777777666554332211 0
Q ss_pred CCCCCEEEccC-CCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEE
Q 048786 98 LPGLELLYLNE-CKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLY 176 (862)
Q Consensus 98 L~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 176 (862)
...+....-.. .......-..+..++.|+++++++| .+..+.+++.-++.++.|+++.|.+..+.. +..+++|+.|+
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LD 335 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLD 335 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEee
Confidence 01111110000 0000111122334566777777774 344555566666777777777777766544 66677777777
Q ss_pred ccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccc
Q 048786 177 FSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTL 256 (862)
Q Consensus 177 L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l 256 (862)
+++|..... ..| -..+-+++.|.++.|.+.+ ...+..+-+|..|++.+|++..+
T Consensus 336 LS~N~Ls~~-~Gw----------------------h~KLGNIKtL~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 336 LSGNLLAEC-VGW----------------------HLKLGNIKTLKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred cccchhHhh-hhh----------------------HhhhcCEeeeehhhhhHhh---hhhhHhhhhheeccccccchhhH
Confidence 777653221 111 1134566777777776532 34455666777777777777755
Q ss_pred c--ccccCCCCCCEEeeecCCCCCcCC
Q 048786 257 P--ASISGLLNLEELELEDCKRLQSLP 281 (862)
Q Consensus 257 p--~~l~~l~~L~~L~L~~c~~L~~lp 281 (862)
. ..|+++|.|+.|.+.+++ +..+|
T Consensus 390 deV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 390 DEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred HHhcccccccHHHHHhhcCCC-ccccc
Confidence 3 367788888888887776 44444
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=8.4e-10 Score=114.84 Aligned_cols=232 Identities=22% Similarity=0.249 Sum_probs=141.9
Q ss_pred cCCCCCcEEEEeCCCCCCc----cccccCCCCCCCEEEeeCC---CCCCccc-------hhhcCCCCCcEEEccCccCc-
Q 048786 25 ELLTGLELLTLKGCKNLSS----LPVTISSLKCLRTLELSGC---SKLKKFP-------QIVASMEDLSKLYLDGTSIA- 89 (862)
Q Consensus 25 ~~L~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L~~c---~~l~~lp-------~~i~~l~~L~~L~L~~~~i~- 89 (862)
..+..+.++++++|+.-.. +...+.+.++|+..+++.- .....+| +.+-..++|++|+|+.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3455555566665443331 2223444555555555541 1111222 22334556667777666554
Q ss_pred ----ccCccCCCCCCCCEEEccCCCCcccc-------------cccccCCCCCCEEEecCCCCCC----CCCcccCCCCc
Q 048786 90 ----EVPSSIELLPGLELLYLNECKNLVRL-------------PSSINGLKSLKTLNLSGCCKLE----NVPDTLGKVES 148 (862)
Q Consensus 90 ----~lp~~i~~L~~L~~L~L~~~~~l~~l-------------p~~l~~l~~L~~L~L~~c~~l~----~lp~~l~~l~~ 148 (862)
.+..-+.++..|++|.|.+|..-..- ..-++.-+.|+++....|..-. .+...++..+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 12222455677777777776543211 1124456789998887754321 22234667789
Q ss_pred ccEEEccCCcCcC-----CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCcccccc-CcCCCCCccEEE
Q 048786 149 LEELDVSGTAIRR-----PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLP-SLTGVCSLTKLD 222 (862)
Q Consensus 149 L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp-~l~~l~~L~~L~ 222 (862)
|+.+.+..|.+.. +...+..+++|+.|++.+|-....... .+. .++.+++|++|+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~-------------------~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV-------------------ALAKALSSWPHLRELN 247 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-------------------HHHHHhcccchheeec
Confidence 9999999887752 234567799999999998875432111 111 166788999999
Q ss_pred ccCCCCCCCCCCcc----cCCCCcccEEECcCCCCc-----cccccccCCCCCCEEeeecCC
Q 048786 223 LSDCGLGEAAIPSD----IDNLHSLKELYLNRNNFV-----TLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 223 Ls~~~l~~~~lp~~----l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~ 275 (862)
+++|.+...+.-.. -...|+|+.|.+.+|.++ .+..++...+.|+.|+|++|.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99998876542221 134789999999999887 445567779999999999986
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=7.8e-08 Score=94.26 Aligned_cols=101 Identities=27% Similarity=0.478 Sum_probs=24.0
Q ss_pred CCcEEEeecCCCcccCcccc-CCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhh-cCCCCCcEEEc
Q 048786 6 DLSDLYLDGTSITEVPSSIE-LLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIV-ASMEDLSKLYL 83 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i-~~l~~L~~L~L 83 (862)
++++|+|.++.|+.+. .++ .+.+|+.|++++| .++.++. +..++.|++|++++| .++.+++.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEEC
Confidence 4556666666665553 333 3556666666653 3444432 445555666666553 333343333 24555555655
Q ss_pred cCccCcccCc--cCCCCCCCCEEEccCCC
Q 048786 84 DGTSIAEVPS--SIELLPGLELLYLNECK 110 (862)
Q Consensus 84 ~~~~i~~lp~--~i~~L~~L~~L~L~~~~ 110 (862)
++|+|.++.+ .+..+++|+.|++.+|.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 5555554322 23344455555554443
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=2.1e-07 Score=101.88 Aligned_cols=74 Identities=27% Similarity=0.511 Sum_probs=52.9
Q ss_pred CCCchhchhhhhccccCcEEecCCCccCcccCcCccccCcccEEecCCCCCCccCcccccCCCCccEEEeeCc---cccc
Q 048786 667 GTDIRELSLAIELLFGLVQLTLNGCKNLERLPRTISALKYLSTLNLSGLSKFREFPEITSSRDQLLEIHLEGT---AIRG 743 (862)
Q Consensus 667 ~~~~~~lp~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~~---~~~~ 743 (862)
+..+.++| ..+++|++|.+++|.+|+.+|..+ ..+|+.|.+++|.++..+|.. |+.|+++++ .+..
T Consensus 61 ~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~ 129 (426)
T PRK15386 61 DCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKN 129 (426)
T ss_pred CCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeCCCCCccccc
Confidence 34777777 345678888888888888888755 357888888888888777764 777777763 3667
Q ss_pred cCchhhcc
Q 048786 744 LPASIELL 751 (862)
Q Consensus 744 lp~~i~~L 751 (862)
||.++..|
T Consensus 130 LPssLk~L 137 (426)
T PRK15386 130 VPNGLTSL 137 (426)
T ss_pred CcchHhhe
Confidence 77766554
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=3.3e-07 Score=100.36 Aligned_cols=115 Identities=23% Similarity=0.423 Sum_probs=86.7
Q ss_pred hhccccCcEEecCCCccCcccCcCccccCcccEEecCCCCCCccCcccccCCCCccEEEeeCc-cccccCchhhccCcCc
Q 048786 677 IELLFGLVQLTLNGCKNLERLPRTISALKYLSTLNLSGLSKFREFPEITSSRDQLLEIHLEGT-AIRGLPASIELLSGNI 755 (862)
Q Consensus 677 ~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~~-~~~~lp~~i~~L~~L~ 755 (862)
+..+.++++|+|++| +++++|.. -.+|+.|.+++|.+++.+|+.+ ..+|++|+++++ .+..+|++++.|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~--- 118 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLE--- 118 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEE---
Confidence 444578899999999 89999952 3469999999999999999854 368999999995 8889998654443
Q ss_pred EEecCCCcccccCCccCCCC------------------CCcCEEccCCCCCCccccccc-CCcccc
Q 048786 756 LSNLKDCKNLKSLPSTINGL------------------RSLRMMYPSGCSKLKNVTETL-GKVESL 802 (862)
Q Consensus 756 ~L~l~~c~~L~~LP~~i~~L------------------~sL~~L~i~~C~~l~~lp~~~-~~l~~L 802 (862)
|....|..+.+||++|..| ++|++|+|++|..+. +|+.+ .+|+.|
T Consensus 119 -L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L 182 (426)
T PRK15386 119 -IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSI 182 (426)
T ss_pred -eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEE
Confidence 3445566789999887666 489999999998763 45433 334444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=5.9e-08 Score=98.73 Aligned_cols=127 Identities=28% Similarity=0.312 Sum_probs=70.9
Q ss_pred CCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEec
Q 048786 52 KCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLS 131 (862)
Q Consensus 52 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 131 (862)
..|+.+||++| .++.+-+++.-++.++.|+++.|.|..+.. +..+++|+.|++++|. +..+..+-.++.+++.|.++
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 34555555553 344455555555555666666655555443 5555666666666543 34444444455555666555
Q ss_pred CCCCCCCCCcccCCCCcccEEEccCCcCcCC--CchhhccCCccEEEccCCCCC
Q 048786 132 GCCKLENVPDTLGKVESLEELDVSGTAIRRP--TSSIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 132 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~L~~~~~~ 183 (862)
+|. ++.+ ..++.+-+|..|++.+|.+..+ ...++++|.|+.+.+.+|...
T Consensus 361 ~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 532 2222 3455666677777777777654 345667777777777776643
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=4.7e-07 Score=88.82 Aligned_cols=103 Identities=20% Similarity=0.325 Sum_probs=36.3
Q ss_pred CCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccc-cCCCCCCEEEecCCCCC--CCCCcccCCCCcccE
Q 048786 75 MEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSI-NGLKSLKTLNLSGCCKL--ENVPDTLGKVESLEE 151 (862)
Q Consensus 75 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~c~~l--~~lp~~l~~l~~L~~ 151 (862)
+.+|+.|++++|.|+.+. .+..++.|++|++++|+ ++.++..+ ..+++|++|++++|... .. -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcce
Confidence 344444444444444442 24444555555555443 22332222 23455555555554321 11 134556777888
Q ss_pred EEccCCcCcCCCc----hhhccCCccEEEccCC
Q 048786 152 LDVSGTAIRRPTS----SIFLMKNLRSLYFSGC 180 (862)
Q Consensus 152 L~l~~~~~~~~~~----~l~~l~~L~~L~L~~~ 180 (862)
|++.+|++...+. .+..+|+|+.|+-...
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 8888887775432 4566888888876543
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.8e-06 Score=102.88 Aligned_cols=111 Identities=26% Similarity=0.333 Sum_probs=86.6
Q ss_pred CCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCc-ccCccCCCCCCCCEEEcc
Q 048786 29 GLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIA-EVPSSIELLPGLELLYLN 107 (862)
Q Consensus 29 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~ 107 (862)
.++.|+|++|.....+|..+..+++|+.|+|++|.....+|..++.+++|+.|++++|.+. .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888887766678888888888888888887766788888888888888888888887 677888888888888888
Q ss_pred CCCCcccccccccCC-CCCCEEEecCCCCCCCC
Q 048786 108 ECKNLVRLPSSINGL-KSLKTLNLSGCCKLENV 139 (862)
Q Consensus 108 ~~~~l~~lp~~l~~l-~~L~~L~L~~c~~l~~l 139 (862)
+|.....+|..++.+ .++..+++.+|..+...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCC
Confidence 888777888777653 46677888877655433
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=3.7e-06 Score=100.22 Aligned_cols=108 Identities=26% Similarity=0.339 Sum_probs=97.1
Q ss_pred CCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCc-ccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEec
Q 048786 53 CLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIA-EVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLS 131 (862)
Q Consensus 53 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 131 (862)
.++.|+|++|.....+|..++++++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999998877889999999999999999999998 788899999999999999999888999999999999999999
Q ss_pred CCCCCCCCCcccCCC-CcccEEEccCCcCc
Q 048786 132 GCCKLENVPDTLGKV-ESLEELDVSGTAIR 160 (862)
Q Consensus 132 ~c~~l~~lp~~l~~l-~~L~~L~l~~~~~~ 160 (862)
+|.....+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999888999888764 56778888888643
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.3e-07 Score=96.51 Aligned_cols=175 Identities=21% Similarity=0.231 Sum_probs=96.3
Q ss_pred CCCEEEccCCCCcc-cccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcC-cC--CCchhhccCCccEE
Q 048786 100 GLELLYLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAI-RR--PTSSIFLMKNLRSL 175 (862)
Q Consensus 100 ~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~-~~--~~~~l~~l~~L~~L 175 (862)
.||+|+|++..... .+-..+..+.+|+.|.+.|......+-..+..-.+|+.|+++.+.. ++ +...+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35566665532211 1222244555666666666554444445556666666666666533 22 22344567777777
Q ss_pred EccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCC--CCCCCCcccCCCCcccEEECcCCCC
Q 048786 176 YFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGL--GEAAIPSDIDNLHSLKELYLNRNNF 253 (862)
Q Consensus 176 ~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l--~~~~lp~~l~~l~~L~~L~L~~n~l 253 (862)
++++|......... .+ -.--+.|+.|+|+++.- ....+......+++|..|+|++|..
T Consensus 266 NlsWc~l~~~~Vtv------------------~V--~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTV------------------AV--AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhhH------------------HH--hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 77777644321000 00 01124677777777632 1111222335577888888887743
Q ss_pred c--cccccccCCCCCCEEeeecCCCCCcCCC------CCCCCcEEeccCCC
Q 048786 254 V--TLPASISGLLNLEELELEDCKRLQSLPQ------IPPNLQFVRANGCS 296 (862)
Q Consensus 254 ~--~lp~~l~~l~~L~~L~L~~c~~L~~lp~------lp~sL~~L~i~~C~ 296 (862)
. ..-..+.+|+.|++|.++.|-.+ +|+ --|+|.+|++.+|-
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 2 33345667888888888888644 222 23778888888774
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.1e-07 Score=94.92 Aligned_cols=179 Identities=21% Similarity=0.208 Sum_probs=114.0
Q ss_pred CCcEEEccCccCc--ccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCC--cccCCCCcccEE
Q 048786 77 DLSKLYLDGTSIA--EVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVP--DTLGKVESLEEL 152 (862)
Q Consensus 77 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L 152 (862)
.|++|||+.+.|+ .+..-+.++.+|+.|.+.+.+.-..+...+.+-.+|+.|+++.|+.++... ..+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777776665 333345566777777777766555555666677777777777777665432 235667777777
Q ss_pred EccCCcCcC--CCchhhc-cCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCC
Q 048786 153 DVSGTAIRR--PTSSIFL-MKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGL 228 (862)
Q Consensus 153 ~l~~~~~~~--~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l 228 (862)
+++-|.... +...+.+ -++|..|+++|+....... .+.. ...+|+|.+|||++|..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--------------------h~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--------------------HLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--------------------HHHHHHHhCCceeeeccccccc
Confidence 777776542 1122222 4578888888876431100 1111 45678899999998854
Q ss_pred CCCCCCcccCCCCcccEEECcCCCCc--cccccccCCCCCCEEeeecCC
Q 048786 229 GEAAIPSDIDNLHSLKELYLNRNNFV--TLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 229 ~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~ 275 (862)
...+.-..+..++.|++|.++.|-.. ..--.++..|.|.+|++.+|-
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 33344455677889999999888432 222256778999999999984
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.99 E-value=1.9e-07 Score=99.58 Aligned_cols=64 Identities=33% Similarity=0.516 Sum_probs=29.6
Q ss_pred CCCCccEEEccCCCCC-CCCCCcccCCCCcccEEECcCCCCc------cccccccCCCCCCEEeeecCCCC
Q 048786 214 GVCSLTKLDLSDCGLG-EAAIPSDIDNLHSLKELYLNRNNFV------TLPASISGLLNLEELELEDCKRL 277 (862)
Q Consensus 214 ~l~~L~~L~Ls~~~l~-~~~lp~~l~~l~~L~~L~L~~n~l~------~lp~~l~~l~~L~~L~L~~c~~L 277 (862)
+.+.|+.+++..|... +..+-..-.+++.|+.|.|+.|... .+...-..+..|+.+.+++|+.+
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 3445555555555432 1112222344556666666555322 11223334555566666666544
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=8.4e-06 Score=65.44 Aligned_cols=57 Identities=39% Similarity=0.536 Sum_probs=38.0
Q ss_pred CCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccc-cccCCCCCCCEEEeeCC
Q 048786 5 KDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLP-VTISSLKCLRTLELSGC 62 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~c 62 (862)
|+|++|++++|+++.+|. .+..+++|++|++++|. ++.+| ..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 567777777777777763 56677777777777644 34444 35666777777777665
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=2.4e-06 Score=97.27 Aligned_cols=238 Identities=26% Similarity=0.332 Sum_probs=140.2
Q ss_pred CCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 4 MKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+..++.+++..+.+.++-..+..+.+|..|++.++ .++.+...+..+++|++|++++|.. +.+ ..+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I-~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKI-TKL-EGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccccc-ccc-cchhhccchhhhee
Confidence 34556666666777665555677788888888774 4555554466678888888887543 332 34455666888888
Q ss_pred cCccCcccCccCCCCCCCCEEEccCCCCccccccc-ccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC
Q 048786 84 DGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSS-INGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 84 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
.+|.|..+.. +..++.|+.+++++|..... ... +..+.+++.+.+.++.... ...+..+..+..+++..|.+..+
T Consensus 148 ~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNLISDISG-LESLKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCcchhccC-CccchhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceec
Confidence 8887776543 44577888888887764332 221 4567778888887754432 12333444455556666666543
Q ss_pred CchhhccC--CccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCC
Q 048786 163 TSSIFLMK--NLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNL 240 (862)
Q Consensus 163 ~~~l~~l~--~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 240 (862)
.... .+. .|+.+++.++...... ..+..+..+..|++.++.+.. -..+...
T Consensus 224 ~~l~-~~~~~~L~~l~l~~n~i~~~~-----------------------~~~~~~~~l~~l~~~~n~~~~---~~~~~~~ 276 (414)
T KOG0531|consen 224 EGLN-ELVMLHLRELYLSGNRISRSP-----------------------EGLENLKNLPVLDLSSNRISN---LEGLERL 276 (414)
T ss_pred cCcc-cchhHHHHHHhcccCcccccc-----------------------ccccccccccccchhhccccc---ccccccc
Confidence 2211 112 3677777776543210 124556677788888776643 1224445
Q ss_pred CcccEEECcCCCCcc---c-cc-cccCCCCCCEEeeecCC
Q 048786 241 HSLKELYLNRNNFVT---L-PA-SISGLLNLEELELEDCK 275 (862)
Q Consensus 241 ~~L~~L~L~~n~l~~---l-p~-~l~~l~~L~~L~L~~c~ 275 (862)
+.+..+....+.+.. . .. .....+.++.+.+.+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred chHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 566666666665441 1 11 14556666666666655
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.82 E-value=5.9e-07 Score=95.92 Aligned_cols=274 Identities=24% Similarity=0.257 Sum_probs=144.8
Q ss_pred CCcEEEeecCC---CcccCccccCCCCCcEEEEeCCCCCCccc--cccCCCCCCCEEEeeCCCCCCcc--chhhcCCCCC
Q 048786 6 DLSDLYLDGTS---ITEVPSSIELLTGLELLTLKGCKNLSSLP--VTISSLKCLRTLELSGCSKLKKF--PQIVASMEDL 78 (862)
Q Consensus 6 ~Lr~L~L~~~~---i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~L~~c~~l~~l--p~~i~~l~~L 78 (862)
.||.|.+.|.. ...+-....++++++.|++.+|..++.-. ..-..++.|++|++..|..++.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777777732 22444455678888888888887665321 11245778888888888776642 2344567788
Q ss_pred cEEEccCc-cCcc--cCccCCCCCCCCEEEccCCCCccc--ccccccCCCCCCEEEecCCCCCCCCC--cccCCCCcccE
Q 048786 79 SKLYLDGT-SIAE--VPSSIELLPGLELLYLNECKNLVR--LPSSINGLKSLKTLNLSGCCKLENVP--DTLGKVESLEE 151 (862)
Q Consensus 79 ~~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~ 151 (862)
++++++++ .|+. +-.-...+++++.+.+.+|..... +-..=+...-+..+++..|..+++.. ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 88888776 3332 222233445566666666554321 11111122334444455554443221 11122445555
Q ss_pred EEccCCcCc-CC--CchhhccCCccEEEccCCCCCCCcccccc---ccccccccCCCCCcc--ccccC-cCCCCCccEEE
Q 048786 152 LDVSGTAIR-RP--TSSIFLMKNLRSLYFSGCNEPPASASWHL---HLPFNLLGKSSCPVA--LMLPS-LTGVCSLTKLD 222 (862)
Q Consensus 152 L~l~~~~~~-~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~--~~lp~-l~~l~~L~~L~ 222 (862)
|+.+++... .. ..-..+..+|+.|.+.+|........... ...+..+....+... ..+.+ -..++.|++|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 555544321 11 11122345666666666554332222111 111222222222211 11222 35678999999
Q ss_pred ccCCCC-CCCC---CCcccCCCCcccEEECcCCCCc--cccccccCCCCCCEEeeecCCCCCc
Q 048786 223 LSDCGL-GEAA---IPSDIDNLHSLKELYLNRNNFV--TLPASISGLLNLEELELEDCKRLQS 279 (862)
Q Consensus 223 Ls~~~l-~~~~---lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~L~~ 279 (862)
+++|.. ++++ +...-.....|..|.|+++..+ ..-..+..+++|+.+++.+|.....
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 998854 3321 1223355778999999999765 3344566777888888888876544
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.81 E-value=3.4e-06 Score=88.37 Aligned_cols=111 Identities=25% Similarity=0.366 Sum_probs=54.0
Q ss_pred hcCCCCCcEEEccCccCc-----ccCccCCCCCCCCEEEccCCCCccc----ccccccCCCCCCEEEecCCCCCCCCC--
Q 048786 72 VASMEDLSKLYLDGTSIA-----EVPSSIELLPGLELLYLNECKNLVR----LPSSINGLKSLKTLNLSGCCKLENVP-- 140 (862)
Q Consensus 72 i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~c~~l~~lp-- 140 (862)
+...+.|+.+.+..|.|. -+...+..+++|+.|++.+|..... +...+..+++|++|+++.|.....-.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 344444555555444443 1122345566666666666543321 23334455666666666664432111
Q ss_pred --ccc-CCCCcccEEEccCCcCcC-----CCchhhccCCccEEEccCCCC
Q 048786 141 --DTL-GKVESLEELDVSGTAIRR-----PTSSIFLMKNLRSLYFSGCNE 182 (862)
Q Consensus 141 --~~l-~~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~ 182 (862)
..+ ...++|+.|.+.+|.++. +...+...+.|+.|++++|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 111 224566666666665552 222333456666666666654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=1.1e-05 Score=82.69 Aligned_cols=232 Identities=21% Similarity=0.215 Sum_probs=133.7
Q ss_pred CCCCCEEEeeCCCCCC--ccchhhcCCCCCcEEEccCccCc---ccCccCCCCCCCCEEEccCCCCcccccccccCCCCC
Q 048786 51 LKCLRTLELSGCSKLK--KFPQIVASMEDLSKLYLDGTSIA---EVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSL 125 (862)
Q Consensus 51 l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L 125 (862)
..-++.|.+.+|..-. .+-..-....+++.|+|.+|.|. ++..-+.+++.|++|+++.|..-..+...-...++|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3344456666653221 11122234567888888888776 344446678888888887765432222111245577
Q ss_pred CEEEecCCCCC-CCCCcccCCCCcccEEEccCCcCcCCC---chhhc-cCCccEEEccCCCCCCCccccccccccccccC
Q 048786 126 KTLNLSGCCKL-ENVPDTLGKVESLEELDVSGTAIRRPT---SSIFL-MKNLRSLYFSGCNEPPASASWHLHLPFNLLGK 200 (862)
Q Consensus 126 ~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~---~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~ 200 (862)
+.|-+.|.... ...-..+..++.+++|.++.|....+. ..... -+.+++|++.+|.... ..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~--------------w~ 189 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL--------------WL 189 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH--------------HH
Confidence 77777764332 222334455666666666665333211 00111 1234444444433110 00
Q ss_pred CCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCcccc--ccccCCCCCCEEeeecCCCCC
Q 048786 201 SSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLP--ASISGLLNLEELELEDCKRLQ 278 (862)
Q Consensus 201 ~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~L~ 278 (862)
..+.. -..+|++..+-+..|.+....-......++.+-.|+|+.+++-+.. ..+..++.|+.|.+.++|...
T Consensus 190 ~~~~l------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 190 NKNKL------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHhH------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 00000 2346788888898898876555566677888889999999887543 367889999999999998777
Q ss_pred cCCCCCCCCcEEeccCCCCceeecCc
Q 048786 279 SLPQIPPNLQFVRANGCSSLVTLFGA 304 (862)
Q Consensus 279 ~lp~lp~sL~~L~i~~C~~L~~l~~~ 304 (862)
.+.. .--+.|-|...+.++.+.+.
T Consensus 264 ~l~~--~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 264 PLRG--GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccC--CcceEEEEeeccceEEecCc
Confidence 6654 22345666677777766543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=3.7e-06 Score=95.67 Aligned_cols=128 Identities=26% Similarity=0.318 Sum_probs=80.2
Q ss_pred CCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEe
Q 048786 51 LKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNL 130 (862)
Q Consensus 51 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 130 (862)
+..++.++++.+ .++..-..+..+++|..|++.+|.|..+...+..+++|+.|++++|. ++.+.. +..++.|+.|++
T Consensus 71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhhee
Confidence 455555555553 23333344566777777777777777776656777777777777765 333322 555666777777
Q ss_pred cCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch-hhccCCccEEEccCCCCC
Q 048786 131 SGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS-IFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 131 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~ 183 (862)
.+|.... + ..+..+.+|+.+++++|.+..+... ...+.+++.+.+.++...
T Consensus 148 ~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 7754332 2 2344577777788888777766553 466777777777776643
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=2.6e-05 Score=62.56 Aligned_cols=56 Identities=29% Similarity=0.512 Sum_probs=24.9
Q ss_pred CCCEEEeeCCCCCCccc-hhhcCCCCCcEEEccCccCcccCc-cCCCCCCCCEEEccCC
Q 048786 53 CLRTLELSGCSKLKKFP-QIVASMEDLSKLYLDGTSIAEVPS-SIELLPGLELLYLNEC 109 (862)
Q Consensus 53 ~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 109 (862)
+|++|++++| .++.+| ..+.++++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444443 222332 234444444444444444444433 2445555555555544
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=6.5e-05 Score=55.63 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCccEEEeeCccccccCchhhccCcCcEEecCCCcccccCCc
Q 048786 729 DQLLEIHLEGTAIRGLPASIELLSGNILSNLKDCKNLKSLPS 770 (862)
Q Consensus 729 ~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~c~~L~~LP~ 770 (862)
++|++|++++++|+++|..+++|++|++|++++++ +.++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 46888888888888888888888888888888886 776654
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.26 E-value=0.00032 Score=51.96 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=31.5
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcccc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV 46 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~ 46 (862)
++|++|++++|+|+++|..++++++|++|++++|. ++.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 57899999999999998878999999999998864 555443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.25 E-value=5.5e-06 Score=93.94 Aligned_cols=202 Identities=26% Similarity=0.274 Sum_probs=117.0
Q ss_pred CCCCcEEEEeCCCCCCcc-ccccCCCCCCCEEEeeCCCCCCccchhhcCCC-CCcEEEccCc--cCcccCcc-CCC----
Q 048786 27 LTGLELLTLKGCKNLSSL-PVTISSLKCLRTLELSGCSKLKKFPQIVASME-DLSKLYLDGT--SIAEVPSS-IEL---- 97 (862)
Q Consensus 27 L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~L~~~--~i~~lp~~-i~~---- 97 (862)
++++..|.+-....-.-. |-.|..+..||+|.|++|..-. ..++..+. .|++|...+. .+.++-.+ ++.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 345555555432221111 5557778889999998885432 11111111 2333322211 11111111 111
Q ss_pred --CCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEE
Q 048786 98 --LPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSL 175 (862)
Q Consensus 98 --L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 175 (862)
...|...+.++| .+..+..++.-++.|+.|++++|..... ..+..++.|++|||++|.+..+|..-..--.|+.|
T Consensus 161 ~~Wn~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 161 PVWNKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheee
Confidence 123334444443 3555666677778888888888654433 26777888888888888888776543333348888
Q ss_pred EccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCcc
Q 048786 176 YFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVT 255 (862)
Q Consensus 176 ~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~ 255 (862)
.+++|...+ +-.+.++.+|+.||+++|-+.+-.-...+..+..|+.|.|.||.+..
T Consensus 238 ~lrnN~l~t------------------------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 238 NLRNNALTT------------------------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eecccHHHh------------------------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 888776432 33366778899999999877653333445667889999999988764
Q ss_pred cc
Q 048786 256 LP 257 (862)
Q Consensus 256 lp 257 (862)
-|
T Consensus 294 ~p 295 (1096)
T KOG1859|consen 294 AP 295 (1096)
T ss_pred CH
Confidence 44
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00014 Score=86.80 Aligned_cols=132 Identities=29% Similarity=0.360 Sum_probs=80.6
Q ss_pred CCCcEEEEeCCCCCC-cccccc-CCCCCCCEEEeeCCCCC-CccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEE
Q 048786 28 TGLELLTLKGCKNLS-SLPVTI-SSLKCLRTLELSGCSKL-KKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELL 104 (862)
Q Consensus 28 ~~L~~L~Ls~c~~l~-~lp~~l-~~l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 104 (862)
.+|++|++++...+. ..|..+ ..+|+|+.|.+.|-... ..+-....++++|+.||++++.++.+ .+++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 478888887744332 233333 35788888888873221 23445567788888888888888877 678888888888
Q ss_pred EccCCCCcc-cccccccCCCCCCEEEecCCCCCCCC------CcccCCCCcccEEEccCCcCc
Q 048786 105 YLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENV------PDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 105 ~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l------p~~l~~l~~L~~L~l~~~~~~ 160 (862)
.+.+-.... .--..+.+|++|+.||++.-...... -+.-..+++|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 877643322 11123556888888888774433211 011123566666666655444
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=0.00018 Score=85.82 Aligned_cols=129 Identities=21% Similarity=0.257 Sum_probs=92.1
Q ss_pred cccCcEEecCCCccCcc-cCcCc-cccCcccEEecCCCCC-CccCcccccCCCCccEEEeeCccccccCchhhccCcCcE
Q 048786 680 LFGLVQLTLNGCKNLER-LPRTI-SALKYLSTLNLSGLSK-FREFPEITSSRDQLLEIHLEGTAIRGLPASIELLSGNIL 756 (862)
Q Consensus 680 ~~~L~~L~l~~c~~l~~-lp~~~-~~l~~L~~L~l~~c~~-l~~~p~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~ 756 (862)
-.+|++|+|++-..+.. -|.-+ ..|++|+.|.+.|-.- -..|-....+.+||+.||+|||+++.+ .+|++|++||.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 45889999987433311 11112 2488999999988322 223555567889999999999999999 89999999999
Q ss_pred EecCCCcccccCC--ccCCCCCCcCEEccCCCCCCccc--cc----ccCCccccceecccCC
Q 048786 757 SNLKDCKNLKSLP--STINGLRSLRMMYPSGCSKLKNV--TE----TLGKVESLEVRLSSWN 810 (862)
Q Consensus 757 L~l~~c~~L~~LP--~~i~~L~sL~~L~i~~C~~l~~l--p~----~~~~l~~L~~~~~~~~ 810 (862)
|.+++-+ +++=+ ..+.+|++|+.||||+-.+.... .. .-.-|..|+-++|+.+
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 9999877 54433 24789999999999987665433 11 1123777777888744
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.14 E-value=6.9e-05 Score=76.01 Aligned_cols=63 Identities=27% Similarity=0.404 Sum_probs=39.3
Q ss_pred cCCCCCccEEEccCCCCCCCCCCc----ccCCCCcccEEECcCCCCcc-----ccccccCCCCCCEEeeecC
Q 048786 212 LTGVCSLTKLDLSDCGLGEAAIPS----DIDNLHSLKELYLNRNNFVT-----LPASISGLLNLEELELEDC 274 (862)
Q Consensus 212 l~~l~~L~~L~Ls~~~l~~~~lp~----~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~c 274 (862)
+.....|+++.+..|+|..+++.. .+..+.+|+.|+|.+|.++. +...+..-+.|+.|.+.+|
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 334457788888888776543322 23456788888888887762 2223344455677777776
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00018 Score=73.95 Aligned_cols=184 Identities=17% Similarity=0.166 Sum_probs=113.9
Q ss_pred CCCCCCEEEeeCCCCC--CccchhhcCCCCCcEEEccCccCcccCccC-CCCCCCCEEEccCCCCc-ccccccccCCCCC
Q 048786 50 SLKCLRTLELSGCSKL--KKFPQIVASMEDLSKLYLDGTSIAEVPSSI-ELLPGLELLYLNECKNL-VRLPSSINGLKSL 125 (862)
Q Consensus 50 ~l~~L~~L~L~~c~~l--~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l-~~lp~~l~~l~~L 125 (862)
....++.|||.+|... .++...+.+|++|+.|+++.|++.....+. ..+.+|+.|-|.+...- +..-+.+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4678899999996432 345666789999999999999876443333 36678899988875432 2233456678888
Q ss_pred CEEEecCCCCC--CCCCcccCC-CCcccEEEccCCcCcC---CCchhhccCCccEEEccCCCCCCCcccccccccccccc
Q 048786 126 KTLNLSGCCKL--ENVPDTLGK-VESLEELDVSGTAIRR---PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLG 199 (862)
Q Consensus 126 ~~L~L~~c~~l--~~lp~~l~~-l~~L~~L~l~~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~ 199 (862)
++|+++.|+.. ..-...... -+.+++|....|.... .......++++..+.+..|.......
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~------------ 216 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS------------ 216 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh------------
Confidence 88888876321 111111111 1244555555544321 11122346778888877775432111
Q ss_pred CCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCc
Q 048786 200 KSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFV 254 (862)
Q Consensus 200 ~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~ 254 (862)
-.....+|++.-|+++.+++.+..--+.+..++.|..|.+.++.+.
T Consensus 217 ---------ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 217 ---------EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ---------cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 1113455666678888888766555566778899999999888765
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.05 E-value=1.6e-05 Score=90.36 Aligned_cols=153 Identities=26% Similarity=0.313 Sum_probs=74.6
Q ss_pred CccccCCCCCcEEEEeCCCCCCccccccCCC-CCCCEEEeeCCCCCCccchhh----cC------CCCCcEEEccCccCc
Q 048786 21 PSSIELLTGLELLTLKGCKNLSSLPVTISSL-KCLRTLELSGCSKLKKFPQIV----AS------MEDLSKLYLDGTSIA 89 (862)
Q Consensus 21 p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l-~~L~~L~L~~c~~l~~lp~~i----~~------l~~L~~L~L~~~~i~ 89 (862)
|-+|..+..||.|.+.+|..-. . ..+..+ ..|++|.-.+ .+..+-..| +. ...|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 5567889999999999986433 1 111111 1244443222 111111111 00 112444455555555
Q ss_pred ccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhcc
Q 048786 90 EVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLM 169 (862)
Q Consensus 90 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l 169 (862)
.+.+++.-++.|+.|+|+.|+... .. .+..++.|++|||+.|. +..+|..-..--.|+.|.+.||.++++. .+.++
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~L 253 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENL 253 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHhhh-hHHhh
Confidence 555556666666666666655322 22 35556666666666533 3333321111112666666666555442 24455
Q ss_pred CCccEEEccCCC
Q 048786 170 KNLRSLYFSGCN 181 (862)
Q Consensus 170 ~~L~~L~L~~~~ 181 (862)
.+|+.|+++.|-
T Consensus 254 ksL~~LDlsyNl 265 (1096)
T KOG1859|consen 254 KSLYGLDLSYNL 265 (1096)
T ss_pred hhhhccchhHhh
Confidence 566666665543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.0049 Score=60.48 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=40.3
Q ss_pred cCCCCCcEEEccCccCcccCccCC-CCCCCCEEEccCCCCc--ccccccccCCCCCCEEEecCCCCCCCCC---cccCCC
Q 048786 73 ASMEDLSKLYLDGTSIAEVPSSIE-LLPGLELLYLNECKNL--VRLPSSINGLKSLKTLNLSGCCKLENVP---DTLGKV 146 (862)
Q Consensus 73 ~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~L~~c~~l~~lp---~~l~~l 146 (862)
.+++.|..|.+.+|.|..+.+.++ .+++|+.|.+.+|... .++-. +..++.|++|.+-+|.....-- ..+..+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEec
Confidence 344455555555555555544433 2344555555554321 11111 3445666666666654332211 224556
Q ss_pred CcccEEEccCC
Q 048786 147 ESLEELDVSGT 157 (862)
Q Consensus 147 ~~L~~L~l~~~ 157 (862)
++|+.||+.+-
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 67777776543
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.28 E-value=0.00055 Score=62.78 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=79.0
Q ss_pred CCcEEEeecCCCcccCcc---ccCCCCCcEEEEeCCCCCCccccccC-CCCCCCEEEeeCCCCCCccchhhcCCCCCcEE
Q 048786 6 DLSDLYLDGTSITEVPSS---IELLTGLELLTLKGCKNLSSLPVTIS-SLKCLRTLELSGCSKLKKFPQIVASMEDLSKL 81 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~~---i~~L~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 81 (862)
.+..++|+++.+-.+++. +....+|...+|++ +.++.+|+.+. +++.++.|++.+ +.+..+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 455677877777656554 44566777788888 45777777663 456888899988 4677888889999999999
Q ss_pred EccCccCcccCccCCCCCCCCEEEccCCC
Q 048786 82 YLDGTSIAEVPSSIELLPGLELLYLNECK 110 (862)
Q Consensus 82 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 110 (862)
+++.|.+...|..+..|.+|..|+..++.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 99999988888888778888888877755
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.19 E-value=0.00048 Score=80.00 Aligned_cols=130 Identities=28% Similarity=0.361 Sum_probs=67.2
Q ss_pred CCCCCEEEeeCCCCCCc--cchhhcCCCCCcEEEccCc--cCccc----CccCCCCCCCCEEEccCCCCccccc-ccc-c
Q 048786 51 LKCLRTLELSGCSKLKK--FPQIVASMEDLSKLYLDGT--SIAEV----PSSIELLPGLELLYLNECKNLVRLP-SSI-N 120 (862)
Q Consensus 51 l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~L~~~--~i~~l----p~~i~~L~~L~~L~L~~~~~l~~lp-~~l-~ 120 (862)
+++|+.|.+.+|..+.. +-......++|+.|+++++ .+... ......+.+|+.|+++++..+++.. ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666665554 3345556666666666652 11111 1123344667777777666433211 111 1
Q ss_pred CCCCCCEEEecCCCCCC--CCCcccCCCCcccEEEccCCcCc---CCCchhhccCCccEEEccCC
Q 048786 121 GLKSLKTLNLSGCCKLE--NVPDTLGKVESLEELDVSGTAIR---RPTSSIFLMKNLRSLYFSGC 180 (862)
Q Consensus 121 ~l~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~~~~~---~~~~~l~~l~~L~~L~L~~~ 180 (862)
.+++|++|.+.+|..++ .+-.....+++|++|+++++... .+......+++|+.|.+..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 25677777766666432 12222345666777777766443 12233344566666554443
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.96 E-value=0.00052 Score=62.94 Aligned_cols=106 Identities=25% Similarity=0.342 Sum_probs=80.7
Q ss_pred CCCCcEEEEeCCCCCCcccc---ccCCCCCCCEEEeeCCCCCCccchhh-cCCCCCcEEEccCccCcccCccCCCCCCCC
Q 048786 27 LTGLELLTLKGCKNLSSLPV---TISSLKCLRTLELSGCSKLKKFPQIV-ASMEDLSKLYLDGTSIAEVPSSIELLPGLE 102 (862)
Q Consensus 27 L~~L~~L~Ls~c~~l~~lp~---~l~~l~~L~~L~L~~c~~l~~lp~~i-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 102 (862)
-..+..++|+.|.. ..+++ .+.+.++|...+|++| .++.+|+.+ .+.+.++.|++.+|.|.++|..+..++.|+
T Consensus 26 akE~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 26 AKELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred HHHhhhcccccchh-hHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 34566788888753 33333 3566788888999995 566777666 455688999999999999999999999999
Q ss_pred EEEccCCCCcccccccccCCCCCCEEEecCCCC
Q 048786 103 LLYLNECKNLVRLPSSINGLKSLKTLNLSGCCK 135 (862)
Q Consensus 103 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~ 135 (862)
.|+++.|. +...|..+..+.+|..|+..++..
T Consensus 104 ~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hcccccCc-cccchHHHHHHHhHHHhcCCCCcc
Confidence 99999876 455666677788888888877543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.93 E-value=0.015 Score=57.13 Aligned_cols=62 Identities=21% Similarity=0.143 Sum_probs=30.2
Q ss_pred cCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC--CchhhccCCccEEEccCCC
Q 048786 120 NGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP--TSSIFLMKNLRSLYFSGCN 181 (862)
Q Consensus 120 ~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~L~~~~ 181 (862)
..++.|.+|.+..|.....-|.--.-+++|+.|.+.+|.+.++ ...+..++.|++|.+-+|.
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 3445555555555433322222222344555666666555543 2234455666666666655
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.48 E-value=0.002 Score=74.84 Aligned_cols=132 Identities=30% Similarity=0.481 Sum_probs=83.1
Q ss_pred cCCCCCcEEEEeCCCCCCc--cccccCCCCCCCEEEeeCC-CCCCccc----hhhcCCCCCcEEEccCcc-CcccC-ccC
Q 048786 25 ELLTGLELLTLKGCKNLSS--LPVTISSLKCLRTLELSGC-SKLKKFP----QIVASMEDLSKLYLDGTS-IAEVP-SSI 95 (862)
Q Consensus 25 ~~L~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~c-~~l~~lp----~~i~~l~~L~~L~L~~~~-i~~lp-~~i 95 (862)
...+.|+.|.+.+|..+.. +-.....+++|+.|++++| ......+ .....+.+|+.|+++.+. +.+.- ..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478888888888877775 3344566888999998873 3322222 334556788888888876 44321 112
Q ss_pred -CCCCCCCEEEccCCCCccc--ccccccCCCCCCEEEecCCCCCCC--CCcccCCCCcccEEEccC
Q 048786 96 -ELLPGLELLYLNECKNLVR--LPSSINGLKSLKTLNLSGCCKLEN--VPDTLGKVESLEELDVSG 156 (862)
Q Consensus 96 -~~L~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L~~c~~l~~--lp~~l~~l~~L~~L~l~~ 156 (862)
..+++|+.|.+.+|..++. +-.....+++|++|++++|..... +......+++|+.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 2378899999888875432 233345678899999998887632 222234466666655433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.34 E-value=0.027 Score=57.79 Aligned_cols=87 Identities=24% Similarity=0.356 Sum_probs=58.0
Q ss_pred cCCCCCccEEEccCC--CCCCCCCCcccCCCCcccEEECcCCCCcccc--ccccCCCCCCEEeeecCCCCCcCC------
Q 048786 212 LTGVCSLTKLDLSDC--GLGEAAIPSDIDNLHSLKELYLNRNNFVTLP--ASISGLLNLEELELEDCKRLQSLP------ 281 (862)
Q Consensus 212 l~~l~~L~~L~Ls~~--~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~L~~lp------ 281 (862)
+..+++|+.|.++.| ++. ..++.....+|+|++|++++|++..+. ..+..+.+|..|++.+|+-.. +-
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHH
Confidence 556778888888888 443 345555566688999999988776321 245678888888888887443 21
Q ss_pred -CCCCCCcEEeccCCCCcee
Q 048786 282 -QIPPNLQFVRANGCSSLVT 300 (862)
Q Consensus 282 -~lp~sL~~L~i~~C~~L~~ 300 (862)
.+.++|++|+-.++..=+.
T Consensus 139 f~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred HHHhhhhccccccccCCccc
Confidence 2457777777666554443
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.022 Score=35.14 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=8.3
Q ss_pred ccEEEeeCccccccCchh
Q 048786 731 LLEIHLEGTAIRGLPASI 748 (862)
Q Consensus 731 L~~L~l~~~~~~~lp~~i 748 (862)
|++|||+++.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.18 E-value=0.025 Score=58.01 Aligned_cols=177 Identities=19% Similarity=0.239 Sum_probs=119.0
Q ss_pred CCCCcEEEeecCCCc-----ccCccccCCCCCcEEEEeCCCCCC----cccc-------ccCCCCCCCEEEeeCCCCCCc
Q 048786 4 MKDLSDLYLDGTSIT-----EVPSSIELLTGLELLTLKGCKNLS----SLPV-------TISSLKCLRTLELSGCSKLKK 67 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~Ls~c~~l~----~lp~-------~l~~l~~L~~L~L~~c~~l~~ 67 (862)
+..+..++|+||.|. .+...|.+-.+|+..++++ .... .+|+ .+-++++|+..+|+.|..-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 567889999999886 5667788889999999986 2222 2332 356799999999999877666
Q ss_pred cch----hhcCCCCCcEEEccCccCcccCc--------------cCCCCCCCCEEEccCCCCcccccc-----cccCCCC
Q 048786 68 FPQ----IVASMEDLSKLYLDGTSIAEVPS--------------SIELLPGLELLYLNECKNLVRLPS-----SINGLKS 124 (862)
Q Consensus 68 lp~----~i~~l~~L~~L~L~~~~i~~lp~--------------~i~~L~~L~~L~L~~~~~l~~lp~-----~l~~l~~ 124 (862)
.|+ .+.+-+.|.||.+++|++..+.. ...+-+.|+......|+. ...+. .+..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhcC
Confidence 554 45677899999999998764322 123557788877776553 22221 1223357
Q ss_pred CCEEEecCCCCCCC-----CCcccCCCCcccEEEccCCcCcCC-----CchhhccCCccEEEccCCCC
Q 048786 125 LKTLNLSGCCKLEN-----VPDTLGKVESLEELDVSGTAIRRP-----TSSIFLMKNLRSLYFSGCNE 182 (862)
Q Consensus 125 L~~L~L~~c~~l~~-----lp~~l~~l~~L~~L~l~~~~~~~~-----~~~l~~l~~L~~L~L~~~~~ 182 (862)
|+++.+..|..... +...+..+.+|+.|++.+|.++.. ...+...+.|+.|.+.+|-.
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 88888877654322 122345678888999988887733 22334456788888888763
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.0046 Score=63.35 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=72.6
Q ss_pred cCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEEC
Q 048786 169 MKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYL 248 (862)
Q Consensus 169 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L 248 (862)
+.+.++|+..||.... +.-...++.|+.|.|+-|.++. ...+..+++|++|+|
T Consensus 18 l~~vkKLNcwg~~L~D------------------------Isic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYL 70 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------------------------ISICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYL 70 (388)
T ss_pred HHHhhhhcccCCCccH------------------------HHHHHhcccceeEEeecccccc---chhHHHHHHHHHHHH
Confidence 5567788888876432 1114567899999999999863 456788999999999
Q ss_pred cCCCCccccc--cccCCCCCCEEeeecCCCCCcCCC--------CCCCCcEEe
Q 048786 249 NRNNFVTLPA--SISGLLNLEELELEDCKRLQSLPQ--------IPPNLQFVR 291 (862)
Q Consensus 249 ~~n~l~~lp~--~l~~l~~L~~L~L~~c~~L~~lp~--------lp~sL~~L~ 291 (862)
..|.|.++-+ .+.++|+|+.|.|..++-...-+. ..|+|++|+
T Consensus 71 RkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 71 RKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999987754 678999999999999986655442 246666654
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.64 E-value=0.23 Score=46.02 Aligned_cols=35 Identities=6% Similarity=0.169 Sum_probs=13.0
Q ss_pred hcCCCCCcEEEccCccCcccCcc-CCCCCCCCEEEcc
Q 048786 72 VASMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLN 107 (862)
Q Consensus 72 i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~ 107 (862)
+.++.+|+.+.+.. .+..++.. +..+++|+.+.+.
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred eecccccccccccc-cccccccccccccccccccccC
Confidence 34444455555433 33333322 3335555555554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.57 E-value=0.034 Score=34.32 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=12.2
Q ss_pred cCcEEecCCCcccccCCccCCC
Q 048786 753 GNILSNLKDCKNLKSLPSTING 774 (862)
Q Consensus 753 ~L~~L~l~~c~~L~~LP~~i~~ 774 (862)
+|++|++++| +++.+|+++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3566666666 46666665443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.46 E-value=0.048 Score=55.93 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCCCCEEEeeCC--CCCCccchhhcCCCCCcEEEccCccCc
Q 048786 51 LKCLRTLELSGC--SKLKKFPQIVASMEDLSKLYLDGTSIA 89 (862)
Q Consensus 51 l~~L~~L~L~~c--~~l~~lp~~i~~l~~L~~L~L~~~~i~ 89 (862)
+++|+.|.++.| .....++-...++++|++|++++|+|+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 566666666665 333344444445566666666666554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.52 E-value=0.15 Score=29.24 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=5.6
Q ss_pred cCcEEecCCCcccccCC
Q 048786 753 GNILSNLKDCKNLKSLP 769 (862)
Q Consensus 753 ~L~~L~l~~c~~L~~LP 769 (862)
+|+.|++++|. |++||
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 34444444444 44443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.51 E-value=1 Score=41.57 Aligned_cols=101 Identities=12% Similarity=0.305 Sum_probs=45.6
Q ss_pred cCCCCCCCEEEeeCCCCCCccc-hhhcCCCCCcEEEccCccCcccCcc-CCCCCCCCEEEccCCCCccccc-ccccCCCC
Q 048786 48 ISSLKCLRTLELSGCSKLKKFP-QIVASMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLP-SSINGLKS 124 (862)
Q Consensus 48 l~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~l~~l~~ 124 (862)
+.++.+|+.+.+.. .+..++ ..+.++.+|+.+.+..+ +..++.. +..+++|+.+.+.+ .+..++ ..+..+++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 45555666666653 233333 34556666777777654 5555543 55666778887764 233332 33555777
Q ss_pred CCEEEecCCCCCCCCC-cccCCCCcccEEEccC
Q 048786 125 LKTLNLSGCCKLENVP-DTLGKVESLEELDVSG 156 (862)
Q Consensus 125 L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~ 156 (862)
|+.+++... ...++ ..+... +|+.+.+..
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777777542 22222 234444 666666654
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.47 E-value=0.016 Score=59.54 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=29.3
Q ss_pred CCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCcc--CCCCCCCCEEEccCCCCc
Q 048786 50 SLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSS--IELLPGLELLYLNECKNL 112 (862)
Q Consensus 50 ~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~l 112 (862)
+|+.|++|.|+-|. ++.+ .-+..+++|+.|+|..|.|.++.+- +.++++|+.|.|..|...
T Consensus 39 kMp~lEVLsLSvNk-IssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNK-ISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeeccc-cccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 45555555555532 2222 1234455555555555555544332 445555555555554433
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.84 E-value=0.25 Score=28.32 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=7.2
Q ss_pred CccEEEeeCccccccC
Q 048786 730 QLLEIHLEGTAIRGLP 745 (862)
Q Consensus 730 ~L~~L~l~~~~~~~lp 745 (862)
+|+.|+|++++++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666665565555
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.01 E-value=0.82 Score=29.28 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=12.2
Q ss_pred CCccEEEeeCccccccCch
Q 048786 729 DQLLEIHLEGTAIRGLPAS 747 (862)
Q Consensus 729 ~~L~~L~l~~~~~~~lp~~ 747 (862)
++|+.|+|+++.|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.01 E-value=0.82 Score=29.28 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=12.2
Q ss_pred CCccEEEeeCccccccCch
Q 048786 729 DQLLEIHLEGTAIRGLPAS 747 (862)
Q Consensus 729 ~~L~~L~l~~~~~~~lp~~ 747 (862)
++|+.|+|+++.|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.84 E-value=0.052 Score=54.47 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=64.7
Q ss_pred cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCC
Q 048786 23 SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLE 102 (862)
Q Consensus 23 ~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 102 (862)
.|.....-..||++.+. +..+-..+..+..|..|+++. ..+..+|+.++....++++++..|..+..|.+.+..+.++
T Consensus 37 ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 45666777778887743 444445566677788888887 4567788888888888888888888888888888888888
Q ss_pred EEEccCCC
Q 048786 103 LLYLNECK 110 (862)
Q Consensus 103 ~L~L~~~~ 110 (862)
++++.++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 88887765
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.22 E-value=1.6 Score=27.89 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=15.4
Q ss_pred CCcccEEECcCCCCccccccc
Q 048786 240 LHSLKELYLNRNNFVTLPASI 260 (862)
Q Consensus 240 l~~L~~L~L~~n~l~~lp~~l 260 (862)
+++|++|+|++|++..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777643
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.22 E-value=1.6 Score=27.89 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=15.4
Q ss_pred CCcccEEECcCCCCccccccc
Q 048786 240 LHSLKELYLNRNNFVTLPASI 260 (862)
Q Consensus 240 l~~L~~L~L~~n~l~~lp~~l 260 (862)
+++|++|+|++|++..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777643
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.15 E-value=0.6 Score=46.32 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=7.6
Q ss_pred CcccEEecCCCCCCcc
Q 048786 705 KYLSTLNLSGLSKFRE 720 (862)
Q Consensus 705 ~~L~~L~l~~c~~l~~ 720 (862)
++|+.|+|++|+.+++
T Consensus 151 ~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITD 166 (221)
T ss_pred cchheeeccCCCeech
Confidence 3444455555544443
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.82 E-value=0.65 Score=46.06 Aligned_cols=38 Identities=29% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCcccEEECcCC-CCccc-cccccCCCCCCEEeeecCCCC
Q 048786 240 LHSLKELYLNRN-NFVTL-PASISGLLNLEELELEDCKRL 277 (862)
Q Consensus 240 l~~L~~L~L~~n-~l~~l-p~~l~~l~~L~~L~L~~c~~L 277 (862)
.++|+.|+|++| .|++- -.++..+++|+.|.|.+.+..
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 355666666655 34421 235666777777777765533
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=64.68 E-value=0.07 Score=61.29 Aligned_cols=135 Identities=28% Similarity=0.373 Sum_probs=66.8
Q ss_pred CCCCEEEecCCCCCC----CCCcccCCCCcccEEEccCCcCcC-----CCchhh----ccCCccEEEccCCCCCCCcccc
Q 048786 123 KSLKTLNLSGCCKLE----NVPDTLGKVESLEELDVSGTAIRR-----PTSSIF----LMKNLRSLYFSGCNEPPASASW 189 (862)
Q Consensus 123 ~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~~~-----~~~~l~----~l~~L~~L~L~~~~~~~~~~~~ 189 (862)
..|++|++..|.... .+...+.....++.++++.|.+.. .+..+. ...++++|++..|........
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~- 222 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA- 222 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH-
Confidence 344555555554332 233344445666666666665531 122222 355677777777764421100
Q ss_pred ccccccccccCCCCCccccccCcCCCCC-ccEEEccCCCCCCCCC---CcccCCC-CcccEEECcCCCCc-----ccccc
Q 048786 190 HLHLPFNLLGKSSCPVALMLPSLTGVCS-LTKLDLSDCGLGEAAI---PSDIDNL-HSLKELYLNRNNFV-----TLPAS 259 (862)
Q Consensus 190 ~~~~~l~~l~~~~~~~~~~lp~l~~l~~-L~~L~Ls~~~l~~~~l---p~~l~~l-~~L~~L~L~~n~l~-----~lp~~ 259 (862)
..... +...++ +.+|++.+|.+.+..+ ...+... ..++.+++..|.++ .+...
T Consensus 223 --------------~l~~~---l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~ 285 (478)
T KOG4308|consen 223 --------------LLDEV---LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV 285 (478)
T ss_pred --------------HHHHH---HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence 00000 223333 5556666666544321 1122233 45666777776665 34455
Q ss_pred ccCCCCCCEEeeecCC
Q 048786 260 ISGLLNLEELELEDCK 275 (862)
Q Consensus 260 l~~l~~L~~L~L~~c~ 275 (862)
+..++.++.+.++.++
T Consensus 286 l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 286 LVSCRQLEELSLSNNP 301 (478)
T ss_pred HhhhHHHHHhhcccCc
Confidence 5566677777777665
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=59.31 E-value=0.13 Score=59.10 Aligned_cols=177 Identities=25% Similarity=0.292 Sum_probs=102.9
Q ss_pred CcEEEeecCCCc-----ccCccccCCCCCcEEEEeCCCCCCc----cccccCCC-CCCCEEEeeCCCCCC----ccchhh
Q 048786 7 LSDLYLDGTSIT-----EVPSSIELLTGLELLTLKGCKNLSS----LPVTISSL-KCLRTLELSGCSKLK----KFPQIV 72 (862)
Q Consensus 7 Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~~l~~l-~~L~~L~L~~c~~l~----~lp~~i 72 (862)
+..|.|.+|.+. .+-..+....+|..|++++|..... +-..+... ..|++|++..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556666666654 3344566677788888887554321 11112222 456667776664433 355666
Q ss_pred cCCCCCcEEEccCccCcc-----cCccCC----CCCCCCEEEccCCCCccc----ccccccCCCC-CCEEEecCCCCCCC
Q 048786 73 ASMEDLSKLYLDGTSIAE-----VPSSIE----LLPGLELLYLNECKNLVR----LPSSINGLKS-LKTLNLSGCCKLEN 138 (862)
Q Consensus 73 ~~l~~L~~L~L~~~~i~~-----lp~~i~----~L~~L~~L~L~~~~~l~~----lp~~l~~l~~-L~~L~L~~c~~l~~ 138 (862)
....+++.+++..|.+.. ++..+. ...++++|++++|..... +...+...+. +..|++..|.....
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667778888887776641 222233 467788888887764321 2222344444 66677776554322
Q ss_pred ----CCcccCCC-CcccEEEccCCcCcC-----CCchhhccCCccEEEccCCCCC
Q 048786 139 ----VPDTLGKV-ESLEELDVSGTAIRR-----PTSSIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 139 ----lp~~l~~l-~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~ 183 (862)
+...+..+ ..++.+++..|.+++ +...+..++.++.+.+.++...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22334444 567888888887763 3344556678888888877654
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=56.39 E-value=0.3 Score=49.24 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=69.6
Q ss_pred cCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCE
Q 048786 48 ISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKT 127 (862)
Q Consensus 48 l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 127 (862)
+..+..-+.||++.+ .+..+...+..++.|..|+++.+++..+|...+.+..+..+++.+| .....|.+.+..+.++.
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 666788889999885 3444556677778888999999999999999998888888887764 47788999999999999
Q ss_pred EEecCCCC
Q 048786 128 LNLSGCCK 135 (862)
Q Consensus 128 L~L~~c~~ 135 (862)
++..++..
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99887653
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=52.92 E-value=8.8 Score=24.77 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=12.3
Q ss_pred CcccEEECcCCCCccccc
Q 048786 241 HSLKELYLNRNNFVTLPA 258 (862)
Q Consensus 241 ~~L~~L~L~~n~l~~lp~ 258 (862)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777764
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.15 E-value=12 Score=23.79 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=11.7
Q ss_pred CCcCEEccCCCCCCc
Q 048786 776 RSLRMMYPSGCSKLK 790 (862)
Q Consensus 776 ~sL~~L~i~~C~~l~ 790 (862)
++|++|++++|+++.
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 578888888888763
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=37.30 E-value=26 Score=22.62 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=9.8
Q ss_pred CCCcEEEccCccCccc
Q 048786 76 EDLSKLYLDGTSIAEV 91 (862)
Q Consensus 76 ~~L~~L~L~~~~i~~l 91 (862)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=31.71 E-value=24 Score=21.88 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=6.5
Q ss_pred CcccEEECcCCCCc
Q 048786 241 HSLKELYLNRNNFV 254 (862)
Q Consensus 241 ~~L~~L~L~~n~l~ 254 (862)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45556666555543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.44 E-value=38 Score=22.10 Aligned_cols=15 Identities=53% Similarity=0.702 Sum_probs=10.5
Q ss_pred CCccEEEccCCCCCC
Q 048786 216 CSLTKLDLSDCGLGE 230 (862)
Q Consensus 216 ~~L~~L~Ls~~~l~~ 230 (862)
++|++|+|++|.+.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777777777654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.65 E-value=44 Score=38.50 Aligned_cols=84 Identities=23% Similarity=0.196 Sum_probs=56.0
Q ss_pred CCCCCccEEEccCCCCCCCC-CCcccCCCCcccEEECcCC--CCcccccccc--CCCCCCEEeeecCCCCCcCC------
Q 048786 213 TGVCSLTKLDLSDCGLGEAA-IPSDIDNLHSLKELYLNRN--NFVTLPASIS--GLLNLEELELEDCKRLQSLP------ 281 (862)
Q Consensus 213 ~~l~~L~~L~Ls~~~l~~~~-lp~~l~~l~~L~~L~L~~n--~l~~lp~~l~--~l~~L~~L~L~~c~~L~~lp------ 281 (862)
...+.+..+.+++|++.... +.......|+|+.|+|++| .+...+ ++. +...|++|.+.+++-.+..-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 35677888999999875421 2223345689999999999 333222 332 24568999999999887664
Q ss_pred ----CCCCCCcEEeccCCCC
Q 048786 282 ----QIPPNLQFVRANGCSS 297 (862)
Q Consensus 282 ----~lp~sL~~L~i~~C~~ 297 (862)
+.+|.|..|+=...+.
T Consensus 294 ~~i~~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDGVEVQP 313 (585)
T ss_pred HHHHHhcchheeecCcccCc
Confidence 3678887776544433
Done!