Query 048786
Match_columns 862
No_of_seqs 544 out of 4473
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 23:14:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.3E-36 2.5E-40 364.9 30.8 297 1-302 73-385 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.5E-35 2.2E-39 356.5 33.2 294 5-303 50-361 (768)
3 3t6q_A CD180 antigen; protein- 100.0 6.9E-31 2.4E-35 312.7 42.2 295 5-301 33-341 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 6.8E-32 2.3E-36 321.4 31.6 291 5-300 32-343 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-29 1.1E-33 302.6 45.3 136 671-810 470-619 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-30 7.7E-35 308.3 32.9 289 1-295 52-360 (606)
7 4ecn_A Leucine-rich repeat pro 100.0 7.2E-31 2.5E-35 319.6 27.4 127 679-810 695-837 (876)
8 3t6q_A CD180 antigen; protein- 100.0 1.2E-29 4E-34 302.1 37.3 291 1-295 53-386 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-28 5.1E-33 296.6 43.4 285 8-295 7-306 (680)
10 4eco_A Uncharacterized protein 100.0 8.6E-31 2.9E-35 313.0 23.2 248 5-282 81-394 (636)
11 4eco_A Uncharacterized protein 100.0 1.6E-30 5.4E-35 310.7 24.4 230 19-275 197-468 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 1.7E-29 5.8E-34 298.3 31.7 290 5-296 28-336 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-29 1.2E-33 294.3 27.6 290 5-295 26-344 (549)
14 4ecn_A Leucine-rich repeat pro 100.0 4.9E-29 1.7E-33 303.5 26.7 228 20-275 440-708 (876)
15 3j0a_A TOLL-like receptor 5; m 100.0 9.1E-28 3.1E-32 296.3 34.8 295 5-302 24-354 (844)
16 2z63_A TOLL-like receptor 4, v 100.0 1.2E-27 4E-32 282.5 34.4 263 7-296 9-315 (570)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-27 4.3E-32 281.1 30.3 246 4-275 4-262 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4E-32 279.4 26.7 262 8-276 3-288 (520)
19 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 4.1E-31 265.4 26.2 246 3-295 9-267 (454)
20 3j0a_A TOLL-like receptor 5; m 99.9 3.9E-26 1.3E-30 281.7 32.3 294 1-296 44-373 (844)
21 1o6v_A Internalin A; bacterial 99.9 2.6E-24 8.8E-29 247.5 33.4 231 4-274 45-275 (466)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-24 3.8E-29 256.7 30.9 260 5-275 31-364 (562)
23 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-24 4.1E-29 253.9 27.2 216 31-275 3-231 (520)
24 3v47_A TOLL-like receptor 5B a 99.9 2.8E-24 9.6E-29 246.3 28.1 112 676-788 294-407 (455)
25 4g8a_A TOLL-like receptor 4; l 99.9 5.3E-23 1.8E-27 245.5 38.2 131 678-810 442-577 (635)
26 1jl5_A Outer protein YOPM; leu 99.9 7.5E-24 2.6E-28 242.2 25.5 244 1-295 30-287 (454)
27 3o6n_A APL1; leucine-rich repe 99.9 1.4E-23 4.8E-28 235.5 25.0 301 4-317 44-349 (390)
28 3v47_A TOLL-like receptor 5B a 99.9 1.1E-23 3.7E-28 241.5 23.2 296 5-303 30-388 (455)
29 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4E-29 236.7 13.5 250 5-280 50-307 (313)
30 4fmz_A Internalin; leucine ric 99.9 1.4E-22 4.9E-27 223.4 28.9 282 3-301 42-326 (347)
31 3oja_B Anopheles plasmodium-re 99.9 6.6E-23 2.3E-27 243.2 24.5 301 4-317 50-355 (597)
32 2id5_A Lingo-1, leucine rich r 99.9 7.2E-23 2.5E-27 236.2 23.9 288 5-296 32-331 (477)
33 4fmz_A Internalin; leucine ric 99.9 2.3E-22 8E-27 221.7 26.8 280 1-296 62-344 (347)
34 3bz5_A Internalin-J, INLJ; leu 99.9 8.7E-22 3E-26 225.3 29.9 144 4-161 41-184 (457)
35 4g8a_A TOLL-like receptor 4; l 99.9 9.9E-22 3.4E-26 234.4 30.6 282 6-296 53-408 (635)
36 1xku_A Decorin; proteoglycan, 99.9 5.8E-22 2E-26 217.1 25.7 260 6-296 32-304 (330)
37 1o6v_A Internalin A; bacterial 99.9 9.7E-22 3.3E-26 226.0 28.2 275 2-295 65-341 (466)
38 4fcg_A Uncharacterized protein 99.9 2E-22 7E-27 220.4 21.0 220 28-274 81-311 (328)
39 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-22 1.2E-26 228.5 23.6 255 2-302 61-324 (457)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.8E-22 1.6E-26 234.2 24.3 104 5-111 52-158 (562)
41 2id5_A Lingo-1, leucine rich r 99.9 5.6E-22 1.9E-26 228.7 23.5 273 1-275 52-331 (477)
42 2ft3_A Biglycan; proteoglycan, 99.9 9.3E-22 3.2E-26 215.7 23.8 262 6-298 34-307 (332)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-22 3.8E-27 221.1 15.2 248 28-301 50-307 (313)
44 4fcg_A Uncharacterized protein 99.9 1.8E-21 6.3E-26 212.9 21.9 226 4-257 80-317 (328)
45 2z80_A TOLL-like receptor 2, v 99.9 4.5E-22 1.5E-26 220.2 15.9 263 5-296 31-312 (353)
46 3o6n_A APL1; leucine-rich repe 99.9 4.9E-21 1.7E-25 214.8 22.9 280 2-296 66-350 (390)
47 1xku_A Decorin; proteoglycan, 99.9 1.9E-20 6.5E-25 205.0 25.3 242 4-276 51-305 (330)
48 3zyj_A Leucine-rich repeat-con 99.9 1.8E-20 6E-25 213.8 25.4 242 7-275 45-290 (440)
49 3zyi_A Leucine-rich repeat-con 99.9 1.6E-20 5.5E-25 214.9 24.7 242 7-275 56-301 (452)
50 2z66_A Variable lymphocyte rec 99.9 1.8E-20 6.2E-25 202.8 21.3 241 8-275 10-259 (306)
51 3oja_B Anopheles plasmodium-re 99.9 1.9E-20 6.5E-25 222.0 22.9 280 2-296 72-356 (597)
52 2ft3_A Biglycan; proteoglycan, 99.8 5.1E-20 1.7E-24 201.8 23.7 253 15-302 14-280 (332)
53 1wwl_A Monocyte differentiatio 99.8 7.3E-22 2.5E-26 214.5 4.1 243 4-275 42-307 (312)
54 2z80_A TOLL-like receptor 2, v 99.8 4.7E-20 1.6E-24 203.9 18.0 252 5-276 52-313 (353)
55 2z66_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 198.8 18.0 225 5-254 28-261 (306)
56 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-19 8.6E-24 191.8 22.1 219 8-275 14-236 (285)
57 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-18 8.6E-23 202.7 32.5 237 6-302 41-277 (622)
58 3o53_A Protein LRIM1, AGAP0063 99.8 3.8E-21 1.3E-25 209.4 5.6 258 9-301 14-278 (317)
59 3zyi_A Leucine-rich repeat-con 99.8 4.2E-19 1.4E-23 203.2 22.8 225 5-254 75-303 (452)
60 3zyj_A Leucine-rich repeat-con 99.8 5.1E-19 1.7E-23 201.7 23.1 225 5-254 64-292 (440)
61 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-19 4.7E-24 193.8 14.3 178 4-181 31-212 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-19 6.1E-24 196.2 12.6 214 48-296 30-248 (317)
63 3oja_A Leucine-rich immune mol 99.8 7.7E-19 2.6E-23 202.5 17.6 222 19-275 21-248 (487)
64 3oja_A Leucine-rich immune mol 99.8 1.3E-19 4.5E-24 209.0 9.6 237 3-274 32-272 (487)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-17 5.4E-22 195.9 27.4 232 5-296 61-295 (622)
66 3ogk_B Coronatine-insensitive 99.8 4.3E-20 1.5E-24 218.8 3.8 252 22-294 67-351 (592)
67 1p9a_G Platelet glycoprotein I 99.8 9.9E-18 3.4E-22 179.8 20.5 200 24-275 6-206 (290)
68 2z62_A TOLL-like receptor 4, v 99.8 1.1E-17 3.8E-22 178.0 19.9 218 10-275 12-235 (276)
69 1wwl_A Monocyte differentiatio 99.8 1E-18 3.6E-23 189.6 12.0 219 7-255 65-310 (312)
70 1p9a_G Platelet glycoprotein I 99.8 2.8E-17 9.7E-22 176.3 21.7 202 2-254 7-208 (290)
71 2o6q_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 169.8 22.7 147 30-179 18-166 (270)
72 2p1m_B Transport inhibitor res 99.7 4.2E-20 1.4E-24 218.9 -4.5 255 23-295 61-348 (594)
73 2z62_A TOLL-like receptor 4, v 99.7 2.2E-17 7.7E-22 175.7 16.4 202 5-229 28-237 (276)
74 2o6q_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 168.7 22.4 195 53-275 17-216 (270)
75 3rfs_A Internalin B, repeat mo 99.7 3.2E-17 1.1E-21 174.2 15.5 218 12-265 26-247 (272)
76 2xwt_C Thyrotropin receptor; s 99.7 7.2E-17 2.5E-21 167.9 17.5 206 16-276 22-238 (239)
77 1h6u_A Internalin H; cell adhe 99.7 7.5E-17 2.6E-21 174.6 17.9 148 24-181 37-184 (308)
78 2xwt_C Thyrotropin receptor; s 99.7 1.9E-16 6.5E-21 164.7 18.0 174 5-180 31-215 (239)
79 1z7x_W Ribonuclease inhibitor; 99.7 2.2E-19 7.6E-24 205.8 -5.0 271 5-275 3-324 (461)
80 2ast_B S-phase kinase-associat 99.7 4.1E-18 1.4E-22 186.7 5.2 221 6-251 48-282 (336)
81 1z7x_W Ribonuclease inhibitor; 99.7 7.1E-19 2.4E-23 201.6 -1.2 293 3-296 54-409 (461)
82 1h6u_A Internalin H; cell adhe 99.7 4.2E-16 1.4E-20 168.7 19.3 197 48-281 37-233 (308)
83 4ay9_X Follicle-stimulating ho 99.7 8.5E-16 2.9E-20 169.5 22.0 232 8-292 12-253 (350)
84 2ast_B S-phase kinase-associat 99.7 8.1E-18 2.8E-22 184.4 4.7 231 5-261 70-314 (336)
85 4glp_A Monocyte differentiatio 99.7 1.6E-16 5.5E-21 172.1 14.6 220 6-255 65-308 (310)
86 3rfs_A Internalin B, repeat mo 99.7 9E-17 3.1E-21 170.7 12.3 218 29-281 20-239 (272)
87 2ca6_A RAN GTPase-activating p 99.7 2.3E-18 7.7E-23 192.8 -1.0 242 15-275 19-314 (386)
88 4glp_A Monocyte differentiatio 99.7 3.8E-16 1.3E-20 169.2 14.2 224 27-275 63-305 (310)
89 3m19_A Variable lymphocyte rec 99.7 2.3E-15 7.8E-20 157.8 18.5 178 5-184 14-193 (251)
90 2ca6_A RAN GTPase-activating p 99.6 4E-17 1.4E-21 182.7 1.1 236 3-257 30-319 (386)
91 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.8E-19 159.7 19.5 175 5-180 30-212 (350)
92 3ogk_B Coronatine-insensitive 99.6 1.4E-16 4.8E-21 188.5 1.5 204 72-300 188-421 (592)
93 3goz_A Leucine-rich repeat-con 99.6 3.3E-16 1.1E-20 173.6 4.3 247 9-275 2-295 (362)
94 3m19_A Variable lymphocyte rec 99.6 3.7E-14 1.3E-18 148.5 19.6 88 77-164 36-124 (251)
95 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.3E-19 146.2 13.8 152 25-182 41-193 (197)
96 1h6t_A Internalin B; cell adhe 99.6 3.3E-14 1.1E-18 152.4 15.5 169 3-182 44-212 (291)
97 3cvr_A Invasion plasmid antige 99.5 4.4E-14 1.5E-18 164.6 17.1 191 29-263 60-253 (571)
98 3goz_A Leucine-rich repeat-con 99.5 8.2E-16 2.8E-20 170.4 2.0 233 4-255 21-298 (362)
99 4ezg_A Putative uncharacterize 99.5 4.6E-14 1.6E-18 142.0 14.4 152 3-160 42-194 (197)
100 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.9E-18 161.1 18.4 181 53-281 60-247 (571)
101 1h6t_A Internalin B; cell adhe 99.5 9.9E-14 3.4E-18 148.7 16.2 169 49-275 43-211 (291)
102 2o6s_A Variable lymphocyte rec 99.5 8E-14 2.7E-18 141.5 14.6 147 8-180 10-158 (208)
103 2p1m_B Transport inhibitor res 99.5 4.8E-16 1.6E-20 184.0 -2.2 291 3-294 64-441 (594)
104 2v9t_B SLIT homolog 2 protein 99.5 2E-13 6.9E-18 139.9 15.3 150 8-160 14-165 (220)
105 1m9s_A Internalin B; cell inva 99.5 5.8E-14 2E-18 165.2 10.1 130 24-162 39-168 (605)
106 2o6s_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 136.3 14.7 159 76-265 28-190 (208)
107 3e6j_A Variable lymphocyte rec 99.5 6.7E-13 2.3E-17 136.9 16.3 149 8-160 22-172 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 6.2E-13 2.1E-17 136.2 15.2 150 8-160 14-166 (220)
109 1m9s_A Internalin B; cell inva 99.5 2.9E-13 1E-17 159.3 14.5 170 3-183 41-210 (605)
110 2xot_A Amphoterin-induced prot 99.4 7.4E-13 2.5E-17 146.5 15.5 171 8-182 21-201 (361)
111 1xeu_A Internalin C; cellular 99.4 1.6E-13 5.3E-18 144.8 8.8 167 4-182 18-184 (263)
112 1dce_A Protein (RAB geranylger 99.4 1.5E-15 5.2E-20 177.7 -9.7 177 2-183 346-546 (567)
113 1xeu_A Internalin C; cellular 99.4 7.8E-13 2.7E-17 139.5 11.9 151 3-164 39-189 (263)
114 1dce_A Protein (RAB geranylger 99.4 2.5E-15 8.4E-20 175.9 -8.2 195 49-271 346-567 (567)
115 2v9t_B SLIT homolog 2 protein 99.4 3.7E-12 1.3E-16 130.4 15.9 148 31-182 14-164 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.4 4.9E-12 1.7E-16 129.5 15.9 150 31-183 14-166 (220)
117 3e6j_A Variable lymphocyte rec 99.4 5.4E-12 1.8E-16 130.1 16.2 150 30-183 21-172 (229)
118 2ell_A Acidic leucine-rich nuc 99.4 2.2E-12 7.5E-17 126.0 11.8 127 4-133 23-157 (168)
119 2xot_A Amphoterin-induced prot 99.3 4.6E-12 1.6E-16 140.1 14.0 131 31-164 21-153 (361)
120 2je0_A Acidic leucine-rich nuc 99.3 2.9E-12 9.9E-17 122.4 7.5 126 3-131 15-148 (149)
121 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.6E-17 158.3 5.0 154 5-161 173-330 (727)
122 2ell_A Acidic leucine-rich nuc 99.3 1.4E-11 4.6E-16 120.3 10.1 129 27-181 23-158 (168)
123 1w8a_A SLIT protein; signaling 99.3 3.2E-11 1.1E-15 120.6 13.0 123 8-133 11-136 (192)
124 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.6E-16 117.7 8.5 127 51-178 16-148 (149)
125 2wfh_A SLIT homolog 2 protein 99.2 1E-10 3.4E-15 117.1 13.3 107 53-160 32-139 (193)
126 4b8c_D Glucose-repressible alc 99.2 4.4E-12 1.5E-16 152.9 2.8 153 28-183 173-329 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.2 2.5E-11 8.5E-16 119.5 7.7 104 53-160 43-153 (176)
128 1w8a_A SLIT protein; signaling 99.2 1.6E-10 5.4E-15 115.5 13.2 126 31-160 11-139 (192)
129 2o6r_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 110.4 13.5 129 7-161 9-138 (177)
130 2wfh_A SLIT homolog 2 protein 99.1 4.7E-10 1.6E-14 112.2 13.2 126 55-183 13-139 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.1 2.7E-10 9.1E-15 112.1 9.3 131 48-182 15-152 (176)
132 2o6r_A Variable lymphocyte rec 99.0 1.7E-09 5.9E-14 106.2 14.0 129 54-185 9-139 (177)
133 1ds9_A Outer arm dynein; leuci 99.0 6.4E-12 2.2E-16 126.3 -7.0 99 7-109 25-125 (198)
134 3sb4_A Hypothetical leucine ri 99.0 1.6E-09 5.5E-14 117.9 10.9 235 4-271 48-328 (329)
135 1ds9_A Outer arm dynein; leuci 98.9 3.9E-11 1.3E-15 120.6 -3.6 114 669-787 36-151 (198)
136 3g39_A Variable lymphocyte rec 98.9 4.7E-09 1.6E-13 102.5 10.9 102 7-110 11-113 (170)
137 2r9u_A Variable lymphocyte rec 98.9 5.2E-09 1.8E-13 102.6 11.1 82 52-134 33-116 (174)
138 4fdw_A Leucine rich hypothetic 98.7 8E-07 2.7E-11 99.1 23.4 235 5-275 113-356 (401)
139 4fdw_A Leucine rich hypothetic 98.7 5.6E-07 1.9E-11 100.4 22.1 232 1-272 132-378 (401)
140 2r9u_A Variable lymphocyte rec 98.7 5.8E-08 2E-12 95.0 12.0 106 55-164 15-122 (174)
141 3g39_A Variable lymphocyte rec 98.7 5.9E-08 2E-12 94.6 12.0 107 53-162 10-117 (170)
142 3sb4_A Hypothetical leucine ri 98.7 4.6E-08 1.6E-12 106.3 11.7 169 4-177 100-328 (329)
143 2ifg_A High affinity nerve gro 98.6 1.4E-07 4.9E-12 103.1 10.5 101 9-110 12-114 (347)
144 3un9_A NLR family member X1; l 98.4 1.5E-08 5.3E-13 111.9 -1.3 157 27-183 71-252 (372)
145 2ifg_A High affinity nerve gro 98.4 9.1E-07 3.1E-11 96.7 10.9 102 56-160 12-116 (347)
146 4fs7_A Uncharacterized protein 98.4 6.7E-06 2.3E-10 91.5 18.1 58 212-272 293-351 (394)
147 3un9_A NLR family member X1; l 98.3 4.6E-08 1.6E-12 108.1 -1.7 157 5-161 72-253 (372)
148 2ra8_A Uncharacterized protein 98.3 4.9E-07 1.7E-11 99.1 6.3 175 5-182 107-319 (362)
149 2ra8_A Uncharacterized protein 98.3 6.6E-07 2.2E-11 98.1 6.4 155 3-160 137-320 (362)
150 4fs7_A Uncharacterized protein 98.1 3.4E-05 1.2E-09 85.7 17.2 278 1-301 67-393 (394)
151 4gt6_A Cell surface protein; l 98.0 0.00024 8.4E-09 78.8 21.5 238 23-272 58-319 (394)
152 4h09_A Hypothetical leucine ri 97.9 0.003 1E-07 69.4 26.8 77 4-86 45-123 (379)
153 4gt6_A Cell surface protein; l 97.7 0.0014 4.9E-08 72.5 19.3 246 1-281 59-349 (394)
154 1io0_A Tropomodulin; LRR prote 97.6 2.1E-05 7.3E-10 77.5 2.0 114 21-134 29-162 (185)
155 3e4g_A ATP synthase subunit S, 97.4 0.00018 6.2E-09 69.5 5.9 39 100-138 115-154 (176)
156 3e4g_A ATP synthase subunit S, 97.3 0.00016 5.3E-09 70.0 5.1 37 29-65 62-98 (176)
157 1io0_A Tropomodulin; LRR prote 97.3 9.8E-05 3.4E-09 72.6 3.0 63 48-110 32-104 (185)
158 4h09_A Hypothetical leucine ri 97.1 0.029 9.9E-07 61.4 20.9 101 1-108 65-167 (379)
159 3rw6_A Nuclear RNA export fact 96.9 0.0005 1.7E-08 71.4 4.5 79 25-105 167-257 (267)
160 3rw6_A Nuclear RNA export fact 96.9 0.00063 2.2E-08 70.7 4.4 79 73-153 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 92.4 0.085 2.9E-06 51.7 4.0 89 70-158 64-168 (197)
162 3rfe_A Platelet glycoprotein I 91.7 0.26 8.8E-06 44.8 6.2 55 219-275 11-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 91.4 0.11 3.7E-06 50.9 3.5 106 75-180 40-167 (197)
164 3rfe_A Platelet glycoprotein I 88.3 0.63 2.2E-05 42.2 5.7 32 78-109 33-65 (130)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-36 Score=364.88 Aligned_cols=297 Identities=21% Similarity=0.211 Sum_probs=240.2
Q ss_pred CCCCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcccc--ccCCCCCCCEEEeeCCCCCCccchhh-cCCCC
Q 048786 1 MASMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV--TISSLKCLRTLELSGCSKLKKFPQIV-ASMED 77 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp~~i-~~l~~ 77 (862)
|.++++|+.++++.+++..+|+.++.+++|++|+|++|.....+|. .++++++|++|++++|......|..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 4567888999998888888888999999999999999877667777 78999999999999987666666665 78999
Q ss_pred CcEEEccCccCcccCc-c---CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEE
Q 048786 78 LSKLYLDGTSIAEVPS-S---IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELD 153 (862)
Q Consensus 78 L~~L~L~~~~i~~lp~-~---i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 153 (862)
|++|++++|.+...+. . ++.+++|++|++++|......| +..+++|++|++++|.....+|. ++.+++|++|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence 9999999999886543 3 7889999999999987655444 37889999999999887776776 89999999999
Q ss_pred ccCCcCc-CCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCC-CCCccEEEccCCCCCC
Q 048786 154 VSGTAIR-RPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTG-VCSLTKLDLSDCGLGE 230 (862)
Q Consensus 154 l~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~-l~~L~~L~Ls~~~l~~ 230 (862)
+++|.+. ..|..+..+++|++|++++|......+.. ....++.+....+.....+|. +.. +++|++|++++|.+.
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~- 307 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY- 307 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE-
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC-
Confidence 9999888 45778888999999999998765333222 334566677777776666666 444 499999999999886
Q ss_pred CCCCcccCCCCcccEEECcCCCCc-ccccc-ccCCCCCCEEeeecCCCCCcCCC----CCCCCcEEeccCCCCceeec
Q 048786 231 AAIPSDIDNLHSLKELYLNRNNFV-TLPAS-ISGLLNLEELELEDCKRLQSLPQ----IPPNLQFVRANGCSSLVTLF 302 (862)
Q Consensus 231 ~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C~~L~~l~ 302 (862)
+.+|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.....+|. ++++|+.|++.++.--..++
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 457889999999999999999998 88876 89999999999999975556775 34599999999885443333
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.5e-35 Score=356.46 Aligned_cols=294 Identities=23% Similarity=0.186 Sum_probs=242.8
Q ss_pred CCCcEEEeecCCCcc----cCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccch--hhcCCCCC
Q 048786 5 KDLSDLYLDGTSITE----VPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQ--IVASMEDL 78 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~----lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~--~i~~l~~L 78 (862)
.+++.|+|+++.+.. +|.+++++++|+.++++.+. +..+|..++++++|++|+|++|.....+|. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~-~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH-INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC-EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCC-cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 468899999988873 88899999999999999854 455778899999999999999887777888 89999999
Q ss_pred cEEEccCccCc-ccCccC-CCCCCCCEEEccCCCCccccccc---ccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEE
Q 048786 79 SKLYLDGTSIA-EVPSSI-ELLPGLELLYLNECKNLVRLPSS---INGLKSLKTLNLSGCCKLENVPDTLGKVESLEELD 153 (862)
Q Consensus 79 ~~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~---l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 153 (862)
++|++++|.+. .+|..+ +.+++|++|++++|......|.. +.++++|++|++++|......+ ++.+++|++|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 206 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEE
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEE
Confidence 99999999887 455554 89999999999999876666666 7899999999999987665554 37899999999
Q ss_pred ccCCcCcCCCchhhccCCccEEEccCCCCCCCc-cccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCC
Q 048786 154 VSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPAS-ASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAA 232 (862)
Q Consensus 154 l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~ 232 (862)
+++|.+...++.+..+++|++|++++|...... ........++.+....+.....+|.. .+++|++|++++|.+. +.
T Consensus 207 Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~-~~ 284 (768)
T 3rgz_A 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFT-GE 284 (768)
T ss_dssp CCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEE-ES
T ss_pred CcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccC-Cc
Confidence 999999876555999999999999999876432 22233445777778888777777766 8899999999999986 45
Q ss_pred CCcccCCC-CcccEEECcCCCCc-cccccccCCCCCCEEeeecCCCCCcCCC----CCCCCcEEeccCCCCceeecC
Q 048786 233 IPSDIDNL-HSLKELYLNRNNFV-TLPASISGLLNLEELELEDCKRLQSLPQ----IPPNLQFVRANGCSSLVTLFG 303 (862)
Q Consensus 233 lp~~l~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C~~L~~l~~ 303 (862)
+|..+... ++|++|++++|.+. .+|..++.+++|++|++++|.....+|. -.++|+.|++.+|.--..++.
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 78887765 99999999999998 7888999999999999999975557773 358899999999854435554
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.9e-31 Score=312.68 Aligned_cols=295 Identities=18% Similarity=0.177 Sum_probs=192.4
Q ss_pred CCCcEEEeecCCCccc-CccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEV-PSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+++++|++++|.++.+ |..++.+++|++|++++|......|..+.++++|++|++++|......|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3577888888877766 457777888888888876655555667777888888888877665566777778888888888
Q ss_pred cCccCccc-CccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCccc--EEEccCCcCc
Q 048786 84 DGTSIAEV-PSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLE--ELDVSGTAIR 160 (862)
Q Consensus 84 ~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~--~L~l~~~~~~ 160 (862)
++|.+..+ |..++.+++|++|++++|.....-+..+..+++|++|++++|......+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 88877776 45577778888888887765442222334477888888877765555566677777777 7777787777
Q ss_pred CCCchhhccCCccEEEccCCCCCCCccccccccccccccC---CCCCccccccC--cCCCC--CccEEEccCCCCCCCCC
Q 048786 161 RPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGK---SSCPVALMLPS--LTGVC--SLTKLDLSDCGLGEAAI 233 (862)
Q Consensus 161 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lp~--l~~l~--~L~~L~Ls~~~l~~~~l 233 (862)
..+.......+|+.|++.+|..............+..+.. ..... ..++. +..+. +|+.|++++|.+.+ ..
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~-~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~ 270 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-EDISPAVFEGLCEMSVESINLQKHYFFN-IS 270 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC-CCCCGGGGGGGGGSEEEEEECTTCCCSS-CC
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc-cccChhHhchhhcCceeEEEeecCccCc-cC
Confidence 6666555666777777777652110000000000000000 00000 00110 22222 68889999888863 33
Q ss_pred CcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC---CCCCCcEEeccCCCCceee
Q 048786 234 PSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ---IPPNLQFVRANGCSSLVTL 301 (862)
Q Consensus 234 p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~i~~C~~L~~l 301 (862)
+..+..+++|++|++++|.++.+|..+..+++|++|++++|..-...|. -.++|+.|++.++.-...+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 4557888899999999998888888888899999999998863332232 2478888888887544333
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.8e-32 Score=321.41 Aligned_cols=291 Identities=16% Similarity=0.159 Sum_probs=182.6
Q ss_pred CCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
++|++|++++|.++.++. .++++++|++|++++|......|..+.++++|++|++++|......|..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 567888888888887764 7788888888888886544444666778888888888887655555778888888888888
Q ss_pred cCccCcccC-ccCCCCCCCCEEEccCCCCcc-cccccccCCCCCCEEEecCCCCCCCCCcccCCCCccc----EEEccCC
Q 048786 84 DGTSIAEVP-SSIELLPGLELLYLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLE----ELDVSGT 157 (862)
Q Consensus 84 ~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~----~L~l~~~ 157 (862)
++|.+..++ ..++.+++|++|++++|.... .+|..++++++|++|++++|......+..++.+.+|+ .|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 888887776 567888888888888876544 5677788888888888888766555556666655554 7888888
Q ss_pred cCcCCCchhhccCCccEEEccCCCCCCCccc--ccccccccccc-----CCCC-----CccccccCcCCCCCccEEEc-c
Q 048786 158 AIRRPTSSIFLMKNLRSLYFSGCNEPPASAS--WHLHLPFNLLG-----KSSC-----PVALMLPSLTGVCSLTKLDL-S 224 (862)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~l~~l~-----~~~~-----~~~~~lp~l~~l~~L~~L~L-s 224 (862)
.+..++.......+|+.|++++|........ ......+..+. .... .....+..+..+ .++.+++ .
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccc
Confidence 8877766665556788888887754310000 00000000000 0000 000011111111 3445555 3
Q ss_pred CCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCC-CCCCcEEeccCCCCcee
Q 048786 225 DCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQI-PPNLQFVRANGCSSLVT 300 (862)
Q Consensus 225 ~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~l-p~sL~~L~i~~C~~L~~ 300 (862)
.+.+. +.+|. +..+++|+.|++++|.+..+| .+..+++|++|++++|.. +.+|.+ .++|+.|++.++..+..
T Consensus 271 ~~~~~-~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 271 TNDFS-DDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CTTCC-GGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEE
T ss_pred ccccc-ccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccc
Confidence 33333 33344 666677777777777777666 666677777777777664 666543 35566666666644443
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=3.1e-29 Score=302.57 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=106.7
Q ss_pred hhchhhhhccccCcEEecCCCccCcccCc-CccccCcccEEecCCCCCCccCc-----c----cccCCCCccEEEeeCcc
Q 048786 671 RELSLAIELLFGLVQLTLNGCKNLERLPR-TISALKYLSTLNLSGLSKFREFP-----E----ITSSRDQLLEIHLEGTA 740 (862)
Q Consensus 671 ~~lp~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~p-----~----~~~~l~~L~~L~l~~~~ 740 (862)
..+|..+..+++|+.|+++++. +..+|+ .+.++++|++|+++++. ++.++ . .+.++++|++|+|++++
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 3456678889999999998875 556665 47889999999999973 44432 1 25888999999999999
Q ss_pred ccccCch-hhccCcCcEEecCCCcccccCCcc-CCCCCCcCEEccCCCCCCcccccc-cC-CccccceecccCC
Q 048786 741 IRGLPAS-IELLSGNILSNLKDCKNLKSLPST-INGLRSLRMMYPSGCSKLKNVTET-LG-KVESLEVRLSSWN 810 (862)
Q Consensus 741 ~~~lp~~-i~~L~~L~~L~l~~c~~L~~LP~~-i~~L~sL~~L~i~~C~~l~~lp~~-~~-~l~~L~~~~~~~~ 810 (862)
++.+|.. ++.+++|+.|+++++. ++.+|.+ +..+++|++|+++++ ++..+|+. ++ .+++|+.+..+.|
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred CCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCC
Confidence 9999874 7899999999999886 9999976 478999999999998 68888764 33 4666666554433
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.2e-30 Score=308.27 Aligned_cols=289 Identities=16% Similarity=0.099 Sum_probs=224.6
Q ss_pred CCCCCCCcEEEeecCCCccc-CccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCc
Q 048786 1 MASMKDLSDLYLDGTSITEV-PSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLS 79 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 79 (862)
|+++++|++|++++|.++.+ |..|+++++|++|++++|......|..++++++|++|++++|......|..++++++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 56899999999999999987 56789999999999999875555588899999999999999866555557899999999
Q ss_pred EEEccCccCc--ccCccCCCCCCCCEEEccCCCCcccccccccCCCCCC----EEEecCCCCCCCCCcccCCCCcccEEE
Q 048786 80 KLYLDGTSIA--EVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLK----TLNLSGCCKLENVPDTLGKVESLEELD 153 (862)
Q Consensus 80 ~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~----~L~L~~c~~l~~lp~~l~~l~~L~~L~ 153 (862)
+|++++|.+. .+|..++.+++|++|++++|......|..++.+++|+ +|++++|... .++.......+|+.|+
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELT 210 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCceeeeee
Confidence 9999999998 4789999999999999999986665666676666554 8999997654 4555544555999999
Q ss_pred ccCCcCc--CCCchhhccCCccEEEccCCCCCCCcccc-------cc--ccccccccC-CCCCccccccCcCCCCCccEE
Q 048786 154 VSGTAIR--RPTSSIFLMKNLRSLYFSGCNEPPASASW-------HL--HLPFNLLGK-SSCPVALMLPSLTGVCSLTKL 221 (862)
Q Consensus 154 l~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-------~~--~~~l~~l~~-~~~~~~~~lp~l~~l~~L~~L 221 (862)
+++|.+. ..+..+..+++|+.+.+............ .. ...+..+.. ..+......|.+..+++|+.|
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 9999876 46778888999998877543321110000 00 001111112 233444556668889999999
Q ss_pred EccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC-CCCCCcEEeccCC
Q 048786 222 DLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ-IPPNLQFVRANGC 295 (862)
Q Consensus 222 ~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~i~~C 295 (862)
+++++.+.. +| .+..+++|++|++++|.+..+|. + .+++|+.|++++|+.+..++. ..++|+.|++.++
T Consensus 291 ~l~~~~~~~--l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 291 SLAGVSIKY--LE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp EEESCCCCC--CC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred EecCccchh--hh-hccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence 999999864 66 78899999999999999999994 4 999999999999977766542 3477888887766
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=7.2e-31 Score=319.61 Aligned_cols=127 Identities=15% Similarity=0.106 Sum_probs=67.1
Q ss_pred ccccCcEEecCCCccCcccCcCcccc--------CcccEEecCCCCCCccCccccc--CCCCccEEEeeCccccccCchh
Q 048786 679 LLFGLVQLTLNGCKNLERLPRTISAL--------KYLSTLNLSGLSKFREFPEITS--SRDQLLEIHLEGTAIRGLPASI 748 (862)
Q Consensus 679 ~~~~L~~L~l~~c~~l~~lp~~~~~l--------~~L~~L~l~~c~~l~~~p~~~~--~l~~L~~L~l~~~~~~~lp~~i 748 (862)
.+++|+.|+++++ .+..+|..+... ++|+.|++++| ++..+|..+. .+++|+.|+|+++.+..+|..+
T Consensus 695 ~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l 772 (876)
T 4ecn_A 695 TGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772 (876)
T ss_dssp TTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred cCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCccchhh
Confidence 3445555555544 334555433221 25556666555 4445555544 5556666666665555566555
Q ss_pred hccCcCcEEecCC------CcccccCCccCCCCCCcCEEccCCCCCCcccccccCCccccceecccCC
Q 048786 749 ELLSGNILSNLKD------CKNLKSLPSTINGLRSLRMMYPSGCSKLKNVTETLGKVESLEVRLSSWN 810 (862)
Q Consensus 749 ~~L~~L~~L~l~~------c~~L~~LP~~i~~L~sL~~L~i~~C~~l~~lp~~~~~l~~L~~~~~~~~ 810 (862)
+.+++|+.|++++ +.-...+|.+++++++|++|++++|. +..+|+.+. ++|+.+..+.|
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSC
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCC
Confidence 5666666665544 33344555555566666666666553 355555544 35555544444
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.2e-29 Score=302.12 Aligned_cols=291 Identities=19% Similarity=0.165 Sum_probs=211.2
Q ss_pred CCCCCCCcEEEeecCCCccc-CccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCc
Q 048786 1 MASMKDLSDLYLDGTSITEV-PSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLS 79 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 79 (862)
|+++++|++|++++|.+..+ |..|+.+++|++|++++|......|..++++++|++|++++|......|..++++++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 57899999999999999876 67899999999999999876666788899999999999999865554577899999999
Q ss_pred EEEccCccCcccC-ccCCCCCCCCEEEccCCCCcccccccccCCCCCC--EEEecCCCCCCCCCcccCCCCcccEEEccC
Q 048786 80 KLYLDGTSIAEVP-SSIELLPGLELLYLNECKNLVRLPSSINGLKSLK--TLNLSGCCKLENVPDTLGKVESLEELDVSG 156 (862)
Q Consensus 80 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~--~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 156 (862)
+|++++|.+..++ ..+..+++|++|++++|......|..++.+++|+ .|++++|......|..+ ...+|+.|++++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~ 211 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGG 211 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTT
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-hhccccccccCC
Confidence 9999999999763 3344599999999999886666677889999999 89999986655444443 335666666655
Q ss_pred CcCc--------------------------CC-CchhhccC--CccEEEccCCCCCCCccc-cccccccccccCCCCCcc
Q 048786 157 TAIR--------------------------RP-TSSIFLMK--NLRSLYFSGCNEPPASAS-WHLHLPFNLLGKSSCPVA 206 (862)
Q Consensus 157 ~~~~--------------------------~~-~~~l~~l~--~L~~L~L~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~ 206 (862)
+... .+ +..+..+. +|+.|++.+|........ ......+..+....+...
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 4300 00 01111111 556666666654332221 222233444555555444
Q ss_pred ccccC-cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCc-cccc-cccCCCCCCEEeeecCCCCCcCC--
Q 048786 207 LMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFV-TLPA-SISGLLNLEELELEDCKRLQSLP-- 281 (862)
Q Consensus 207 ~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~c~~L~~lp-- 281 (862)
.+|. +..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+. .+|. .+..+++|++|++++|. ++.++
T Consensus 292 -~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 368 (606)
T 3t6q_A 292 -ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCC 368 (606)
T ss_dssp -CCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEES
T ss_pred -CCChhhcccccCCEEECccCCcCc-CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCc
Confidence 3443 8889999999999999863 34678889999999999999887 6665 48899999999999986 44332
Q ss_pred -C---CCCCCcEEeccCC
Q 048786 282 -Q---IPPNLQFVRANGC 295 (862)
Q Consensus 282 -~---lp~sL~~L~i~~C 295 (862)
. -.++|+.|++.++
T Consensus 369 ~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp TTTTTTCTTCCEEECCSC
T ss_pred chhcccCCCCCEEECCCC
Confidence 1 1356666665544
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.5e-28 Score=296.65 Aligned_cols=285 Identities=20% Similarity=0.134 Sum_probs=170.8
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCcc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTS 87 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~ 87 (862)
+.++.++++++++|..+. +++++|++++|......+..+.++++|++|++++|......|..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 566777777777776554 677777777754333333457777777777777766555566777777777777777777
Q ss_pred CcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch-
Q 048786 88 IAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS- 165 (862)
Q Consensus 88 i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~- 165 (862)
+..+|. .++.+++|++|++++|......|..++++++|++|++++|......|..++.+++|++|++++|.++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 777776 377777777777777765443445677777777777777766666666677777777777777777766543
Q ss_pred h--hccCCccEEEccCCCCCCCcccc-ccccccccccCCCCCccc----cccCcCCCCCccEEEccCCCCCCCCCCcccC
Q 048786 166 I--FLMKNLRSLYFSGCNEPPASASW-HLHLPFNLLGKSSCPVAL----MLPSLTGVCSLTKLDLSDCGLGEAAIPSDID 238 (862)
Q Consensus 166 l--~~l~~L~~L~L~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~----~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~ 238 (862)
+ ..+++|+.|++++|......... .....+..+....+.... .++.....++|+.|++++|.+.+ ..|.++.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-~~~~~~~ 243 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFL 243 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-ECTTTTG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-cChhHhh
Confidence 2 23467777777777644322111 111111111111111110 00000123566777777766652 3345555
Q ss_pred CCCc--ccEEECcCCCCcccc-ccccCCCCCCEEeeecCCCCCcCCC---CCCCCcEEeccCC
Q 048786 239 NLHS--LKELYLNRNNFVTLP-ASISGLLNLEELELEDCKRLQSLPQ---IPPNLQFVRANGC 295 (862)
Q Consensus 239 ~l~~--L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~i~~C 295 (862)
.++. |++|++++|.+..++ ..++.+++|++|++++|......|. -.++|+.|++.++
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 5543 777777777666543 4566677777777776653333332 1356666666554
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=8.6e-31 Score=312.96 Aligned_cols=248 Identities=20% Similarity=0.294 Sum_probs=155.5
Q ss_pred CCCcEEEeecCCCc-ccCccccCCCCCcEEEEeCCCC------CC------ccccccCCCCCCCEEEeeCCCCCCccchh
Q 048786 5 KDLSDLYLDGTSIT-EVPSSIELLTGLELLTLKGCKN------LS------SLPVTISSLKCLRTLELSGCSKLKKFPQI 71 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~Ls~c~~------l~------~lp~~l~~l~~L~~L~L~~c~~l~~lp~~ 71 (862)
.+++.|+|+++++. .+|..++++++|++|+|++|.. .. .+|... +..|+ ++++++......|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 36778888888776 7788888888888888887642 11 122211 22333 333332222222222
Q ss_pred hc-------------------CCCCCcEEEcc--CccCcccCccCCCCCCCCEEEccCCCCccc----------------
Q 048786 72 VA-------------------SMEDLSKLYLD--GTSIAEVPSSIELLPGLELLYLNECKNLVR---------------- 114 (862)
Q Consensus 72 i~-------------------~l~~L~~L~L~--~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~---------------- 114 (862)
+. ....++.+.+. .|.+..+|..++++++|++|++++|.....
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 21 11122222222 345556677777777777777777664332
Q ss_pred -cccccc--CCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCc-CcC--CCchhhcc------CCccEEEccCCCC
Q 048786 115 -LPSSIN--GLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTA-IRR--PTSSIFLM------KNLRSLYFSGCNE 182 (862)
Q Consensus 115 -lp~~l~--~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~-~~~--~~~~l~~l------~~L~~L~L~~~~~ 182 (862)
+|..++ ++++|++|++++|...+.+|..++.+++|+.|++++|. ++. +|..+..+ ++|+.|++++|..
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 677776 77777777777777677777777777777777777776 653 66666655 7777777777654
Q ss_pred CCCccccccccccccccCCCCCccccccC---cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCcccccc
Q 048786 183 PPASASWHLHLPFNLLGKSSCPVALMLPS---LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPAS 259 (862)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~~~~~~~lp~---l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 259 (862)
. .+|. +..+++|++|++++|.+. +.+| .+..+++|++|++++|.+..+|.+
T Consensus 318 ~------------------------~ip~~~~l~~l~~L~~L~L~~N~l~-g~ip-~~~~l~~L~~L~L~~N~l~~lp~~ 371 (636)
T 4eco_A 318 K------------------------TFPVETSLQKMKKLGMLECLYNQLE-GKLP-AFGSEIKLASLNLAYNQITEIPAN 371 (636)
T ss_dssp S------------------------SCCCHHHHTTCTTCCEEECCSCCCE-EECC-CCEEEEEESEEECCSSEEEECCTT
T ss_pred C------------------------ccCchhhhccCCCCCEEeCcCCcCc-cchh-hhCCCCCCCEEECCCCccccccHh
Confidence 3 1222 566677777777777775 3466 677777888888888877777777
Q ss_pred ccCCCC-CCEEeeecCCCCCcCCC
Q 048786 260 ISGLLN-LEELELEDCKRLQSLPQ 282 (862)
Q Consensus 260 l~~l~~-L~~L~L~~c~~L~~lp~ 282 (862)
+..+++ |++|++++|. ++.+|.
T Consensus 372 l~~l~~~L~~L~Ls~N~-l~~lp~ 394 (636)
T 4eco_A 372 FCGFTEQVENLSFAHNK-LKYIPN 394 (636)
T ss_dssp SEEECTTCCEEECCSSC-CSSCCS
T ss_pred hhhhcccCcEEEccCCc-Ccccch
Confidence 777777 8888887776 446665
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.6e-30 Score=310.68 Aligned_cols=230 Identities=17% Similarity=0.272 Sum_probs=142.0
Q ss_pred ccCccccCCCCCcEEEEeCCCCCCc-----------------cccccC--CCCCCCEEEeeCCCCCCccchhhcCCCCCc
Q 048786 19 EVPSSIELLTGLELLTLKGCKNLSS-----------------LPVTIS--SLKCLRTLELSGCSKLKKFPQIVASMEDLS 79 (862)
Q Consensus 19 ~lp~~i~~L~~L~~L~Ls~c~~l~~-----------------lp~~l~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 79 (862)
.+|..++++++|++|+|++|..... +|..++ ++++|++|++++|.....+|..++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 3566666677777777776553322 666666 677777777777666666676677777777
Q ss_pred EEEccCcc-Cc--ccCccCCCC------CCCCEEEccCCCCcccccc--cccCCCCCCEEEecCCCCCCCCCcccCCCCc
Q 048786 80 KLYLDGTS-IA--EVPSSIELL------PGLELLYLNECKNLVRLPS--SINGLKSLKTLNLSGCCKLENVPDTLGKVES 148 (862)
Q Consensus 80 ~L~L~~~~-i~--~lp~~i~~L------~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~ 148 (862)
+|++++|. +. .+|..++.+ ++|++|++++|... .+|. .++++++|++|++++|...+.+| .++.+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 77777766 65 366666554 66777777666543 6666 66667777777776655544666 6666666
Q ss_pred ccEEEccCCcCcCCCchhhccCC-ccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCC--CCCccEEEcc
Q 048786 149 LEELDVSGTAIRRPTSSIFLMKN-LRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTG--VCSLTKLDLS 224 (862)
Q Consensus 149 L~~L~l~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~--l~~L~~L~Ls 224 (862)
|+.|++++|.+..+|..+..+++ |+.|++++|.... +|. +.. +++|+.|+++
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~------------------------lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY------------------------IPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS------------------------CCSCCCTTCSSCEEEEECC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc------------------------cchhhhhcccCccCEEECc
Confidence 77777777666666666666666 6666666665331 111 222 2356666666
Q ss_pred CCCCCCCCCCcccC-------CCCcccEEECcCCCCccccccc-cCCCCCCEEeeecCC
Q 048786 225 DCGLGEAAIPSDID-------NLHSLKELYLNRNNFVTLPASI-SGLLNLEELELEDCK 275 (862)
Q Consensus 225 ~~~l~~~~lp~~l~-------~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~c~ 275 (862)
+|.+. +..|..+. .+++|++|++++|.+..+|..+ ..+++|++|++++|.
T Consensus 411 ~N~l~-~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 411 YNEIG-SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SSCTT-TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred CCcCC-CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 66665 33444444 5556666666666666666543 336666666666553
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=298.27 Aligned_cols=290 Identities=18% Similarity=0.143 Sum_probs=182.8
Q ss_pred CCCcEEEeecCCCcccC-ccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEVP-SSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+++++|++++|.++.++ ..+..+++|++|++++|......|..+.++++|++|++++|......|..++++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35777888887777664 36777888888888776533333455777788888888876544444567777888888888
Q ss_pred cCccCcccCc-cCCCCCCCCEEEccCCCCcc-cccccccCCCCCCEEEecCCCCCCCCCcccCCCCcc----cEEEccCC
Q 048786 84 DGTSIAEVPS-SIELLPGLELLYLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESL----EELDVSGT 157 (862)
Q Consensus 84 ~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L----~~L~l~~~ 157 (862)
++|.+..++. .++.+++|++|++++|.... .+|..++++++|++|++++|......+..++.+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 8887777765 47777888888887776544 467777778888888887776555555666666666 67777777
Q ss_pred cCcCCCchhhccCCccEEEccCCCCCCCcccc--cccccccc-----ccCCCCCccccccC--cCCCC--CccEEEccCC
Q 048786 158 AIRRPTSSIFLMKNLRSLYFSGCNEPPASASW--HLHLPFNL-----LGKSSCPVALMLPS--LTGVC--SLTKLDLSDC 226 (862)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~l~~-----l~~~~~~~~~~lp~--l~~l~--~L~~L~Ls~~ 226 (862)
.+..++.......+|+.|++.++......... .....+.. ...........++. +..++ .++.+++.++
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 77765544444447777777766322110000 00000000 00000000001111 22222 3566777766
Q ss_pred CCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC-CCCCCcEEeccCCC
Q 048786 227 GLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ-IPPNLQFVRANGCS 296 (862)
Q Consensus 227 ~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~i~~C~ 296 (862)
....+..|..+..+++|++|++++|.+..+|.++..+ +|++|++++|. +..+|. ..++|+.|++.++.
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNK 336 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCB
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCc
Confidence 2222446777788888888888888888888888888 88888888886 446654 34677777776654
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.5e-29 Score=294.27 Aligned_cols=290 Identities=17% Similarity=0.197 Sum_probs=215.9
Q ss_pred CCCcEEEeecCCCccc-CccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEV-PSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
++|++|++++|.++.+ |..++.+++|++|++++|......|..+..+++|++|++++|......|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5899999999999877 467999999999999997655555577999999999999998666656667999999999999
Q ss_pred cCccCcc--cCccCCCCCCCCEEEccCCCCccccc-ccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 84 DGTSIAE--VPSSIELLPGLELLYLNECKNLVRLP-SSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 84 ~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
++|.+.. +|..++.+++|++|++++|.....+| ..+.++++|++|++++|...+..|..++.+++|+.|+++++.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999984 46789999999999999998777776 57899999999999998887788899999999999999999888
Q ss_pred CCCchh-hccCCccEEEccCCCCCCCc----cccccccccccccCCCCCcccc----cc-CcCCCCCccEEEccCCCCCC
Q 048786 161 RPTSSI-FLMKNLRSLYFSGCNEPPAS----ASWHLHLPFNLLGKSSCPVALM----LP-SLTGVCSLTKLDLSDCGLGE 230 (862)
Q Consensus 161 ~~~~~l-~~l~~L~~L~L~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~----lp-~l~~l~~L~~L~Ls~~~l~~ 230 (862)
.++..+ ..+++|+.|++++|...... ........+..+....+..... ++ .+..+++|+.|++++|.+.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 777665 45899999999998765421 1111112223333333322111 11 14556788888888886543
Q ss_pred CC-C----CcccCCCCcccEEECcCCCCcccc------ccccCCCCCCEEeeecCCCCCcCCC----CCCCCcEEeccCC
Q 048786 231 AA-I----PSDIDNLHSLKELYLNRNNFVTLP------ASISGLLNLEELELEDCKRLQSLPQ----IPPNLQFVRANGC 295 (862)
Q Consensus 231 ~~-l----p~~l~~l~~L~~L~L~~n~l~~lp------~~l~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C 295 (862)
.. + ...+..+++|+.|++.++.+.... .....+++|+.|++++|. ++.+|. -.++|+.|++.++
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCC
Confidence 10 1 123466788888988888665432 223346789999999986 777774 2467777777655
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.9e-29 Score=303.54 Aligned_cols=228 Identities=17% Similarity=0.259 Sum_probs=194.8
Q ss_pred cCccccCCCCCcEEEEeCCCCCC-----------------ccccccC--CCCCCCEEEeeCCCCCCccchhhcCCCCCcE
Q 048786 20 VPSSIELLTGLELLTLKGCKNLS-----------------SLPVTIS--SLKCLRTLELSGCSKLKKFPQIVASMEDLSK 80 (862)
Q Consensus 20 lp~~i~~L~~L~~L~Ls~c~~l~-----------------~lp~~l~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 80 (862)
+|..++++++|++|+|++|.... .+|..++ ++++|++|+|++|.....+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 88899999999999999977544 2999988 9999999999999989999999999999999
Q ss_pred EEccCcc-Ccc--cCccCCCC-------CCCCEEEccCCCCcccccc--cccCCCCCCEEEecCCCCCCCCCcccCCCCc
Q 048786 81 LYLDGTS-IAE--VPSSIELL-------PGLELLYLNECKNLVRLPS--SINGLKSLKTLNLSGCCKLENVPDTLGKVES 148 (862)
Q Consensus 81 L~L~~~~-i~~--lp~~i~~L-------~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~ 148 (862)
|++++|. +.. +|..++.+ ++|+.|++++|... .+|. .++++++|++|++++|... .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 874 88766555 49999999998865 8998 8999999999999998765 888 8999999
Q ss_pred ccEEEccCCcCcCCCchhhccCC-ccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCC--CCccEEEcc
Q 048786 149 LEELDVSGTAIRRPTSSIFLMKN-LRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGV--CSLTKLDLS 224 (862)
Q Consensus 149 L~~L~l~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l--~~L~~L~Ls 224 (862)
|+.|++++|.+..+|..+..+++ |+.|++++|.... +|. +... ++|+.|+++
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~------------------------lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY------------------------IPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS------------------------CCSCCCTTCSSCEEEEECC
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCCc------------------------CchhhhccccCCCCEEECc
Confidence 99999999999999999999999 9999999987542 222 2333 459999999
Q ss_pred CCCCCCCCCC---cccC--CCCcccEEECcCCCCcccccccc-CCCCCCEEeeecCC
Q 048786 225 DCGLGEAAIP---SDID--NLHSLKELYLNRNNFVTLPASIS-GLLNLEELELEDCK 275 (862)
Q Consensus 225 ~~~l~~~~lp---~~l~--~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~c~ 275 (862)
+|.+.. .+| ..+. .+++|+.|+|++|.+..+|..+. .+++|+.|++++|.
T Consensus 653 ~N~l~g-~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 653 YNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SSCTTT-TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCcCCC-ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 999864 233 2333 34599999999999999998765 89999999999984
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=9.1e-28 Score=296.32 Aligned_cols=295 Identities=20% Similarity=0.157 Sum_probs=204.6
Q ss_pred CCCcEEEeecCCCccc-CccccCCCCCcEEEEeCCCCCCcc-ccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 5 KDLSDLYLDGTSITEV-PSSIELLTGLELLTLKGCKNLSSL-PVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
++|++|+|++|.++.+ |..++++++|++|+|++|.....+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 5788888888888766 567888888888888887666666 56688888888888888766666688888888888888
Q ss_pred ccCccCcc-cCcc--CCCCCCCCEEEccCCCCccccc-ccccCCCCCCEEEecCCCCCCCCCcccCCC--CcccEEEccC
Q 048786 83 LDGTSIAE-VPSS--IELLPGLELLYLNECKNLVRLP-SSINGLKSLKTLNLSGCCKLENVPDTLGKV--ESLEELDVSG 156 (862)
Q Consensus 83 L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l--~~L~~L~l~~ 156 (862)
+++|.+.. +|.. ++.+++|++|++++|......+ ..++++++|++|++++|......+..++.+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 88888875 4544 7888888888888877554433 467888888888888877666667777666 7888888888
Q ss_pred CcCcC-CCchhhccCC------ccEEEccCCCCCCCccccccc----cccccccCCC---------CCccc-cccCcCC-
Q 048786 157 TAIRR-PTSSIFLMKN------LRSLYFSGCNEPPASASWHLH----LPFNLLGKSS---------CPVAL-MLPSLTG- 214 (862)
Q Consensus 157 ~~~~~-~~~~l~~l~~------L~~L~L~~~~~~~~~~~~~~~----~~l~~l~~~~---------~~~~~-~lp~l~~- 214 (862)
|.+.. .+..+..+++ |+.|++++|............ ..+..+.... ..... ....+..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 87764 3444444433 888888887543221111000 0011111110 00000 0111223
Q ss_pred -CCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccc-cccccCCCCCCEEeeecCCCCCcC-CC---CCCCCc
Q 048786 215 -VCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTL-PASISGLLNLEELELEDCKRLQSL-PQ---IPPNLQ 288 (862)
Q Consensus 215 -l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~L~~l-p~---lp~sL~ 288 (862)
.++|+.|++++|.+.. ..+..+..+++|+.|+|++|.+..+ |..+..+++|++|++++|. ++.+ |. -.++|+
T Consensus 264 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCC
T ss_pred ccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCC
Confidence 3689999999998863 4577788999999999999999866 5578899999999999986 4444 33 247899
Q ss_pred EEeccCCCCceeec
Q 048786 289 FVRANGCSSLVTLF 302 (862)
Q Consensus 289 ~L~i~~C~~L~~l~ 302 (862)
.|++.++ .+..++
T Consensus 342 ~L~L~~N-~i~~~~ 354 (844)
T 3j0a_A 342 YIDLQKN-HIAIIQ 354 (844)
T ss_dssp EEECCSC-CCCCCC
T ss_pred EEECCCC-CCCccC
Confidence 9999887 455554
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=282.46 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=194.8
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 7 LSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 7 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
.++++.++.+++++|..+. +++++|++++|......+..+.++++|++|++++|......|..++++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 4567788888999998664 68999999997644444557999999999999998655555678999999999999999
Q ss_pred cCcccC-ccCCCCCCCCEEEccCCCCcccccc-cccCCCCCCEEEecCCCCCC-CCCcccCCCCcccEEEccCCcCcCCC
Q 048786 87 SIAEVP-SSIELLPGLELLYLNECKNLVRLPS-SINGLKSLKTLNLSGCCKLE-NVPDTLGKVESLEELDVSGTAIRRPT 163 (862)
Q Consensus 87 ~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~ 163 (862)
.+..++ ..++.+++|++|++++|.. ..++. .++++++|++|++++|.... .+|..++.+++|++|++++|.+..++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCC-CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred cCCccCHhhhcCcccccccccccccc-ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 999887 5699999999999999864 44443 69999999999999987665 57899999999999999999998764
Q ss_pred -chhhccCCc----cEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccC
Q 048786 164 -SSIFLMKNL----RSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDID 238 (862)
Q Consensus 164 -~~l~~l~~L----~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~ 238 (862)
..+..+++| +.|++++|......... +. ..+|+.|++++|......++..+.
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~----------------------~~-~~~L~~L~l~~n~~~~~~~~~~~~ 222 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----------------------FK-EIRLHKLTLRNNFDSLNVMKTCIQ 222 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTT----------------------TT-TCEEEEEEEESCCSCTTHHHHHHH
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHH----------------------hc-cCcceeEecccccccccchhhhhc
Confidence 567778888 89999988754321111 11 124556665555322111111111
Q ss_pred C------------------------------CC--cccEEECcCC-CCc-cccccccCCCCCCEEeeecCCCCCcCCCCC
Q 048786 239 N------------------------------LH--SLKELYLNRN-NFV-TLPASISGLLNLEELELEDCKRLQSLPQIP 284 (862)
Q Consensus 239 ~------------------------------l~--~L~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~c~~L~~lp~lp 284 (862)
. ++ .++.+++.++ .+. .+|..+..+++|+.|++++|. ++.+|...
T Consensus 223 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~ 301 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFS 301 (570)
T ss_dssp TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCC
T ss_pred CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhh
Confidence 1 11 3455666655 333 466788889999999999985 56777532
Q ss_pred --CCCcEEeccCCC
Q 048786 285 --PNLQFVRANGCS 296 (862)
Q Consensus 285 --~sL~~L~i~~C~ 296 (862)
.+|+.|++.+|.
T Consensus 302 ~~~~L~~L~l~~n~ 315 (570)
T 2z63_A 302 YNFGWQHLELVNCK 315 (570)
T ss_dssp SCCCCSEEEEESCB
T ss_pred ccCCccEEeeccCc
Confidence 288999998885
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.2e-27 Score=281.06 Aligned_cols=246 Identities=20% Similarity=0.216 Sum_probs=201.6
Q ss_pred CCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 4 MKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
++...+.+.++++++++|..+. ++|++|++++|......|..+.++++|++|++++|......|..++++++|++|++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4455567788899999998765 89999999997755455677999999999999998766666788999999999999
Q ss_pred cCccCcccCcc-CCCCCCCCEEEccCCCCcc-cccccccCCCCCCEEEecCCCCCCCCC-cccCCCCcccEEEccCCcCc
Q 048786 84 DGTSIAEVPSS-IELLPGLELLYLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENVP-DTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 84 ~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~ 160 (862)
++|.+..++.. ++.+++|++|++++|.... ..|..++++++|++|++++|...+.+| ..++.+++|++|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999988876 9999999999999987554 457789999999999999998677666 57999999999999999998
Q ss_pred C-CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC--cCCCCCccEEEccCCCCCCCCC-C-c
Q 048786 161 R-PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS--LTGVCSLTKLDLSDCGLGEAAI-P-S 235 (862)
Q Consensus 161 ~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~--l~~l~~L~~L~Ls~~~l~~~~l-p-~ 235 (862)
. .|..+..+++|+.|++.++.... +|. +..+++|+.|++++|.+....+ | .
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAF------------------------LLEIFADILSSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTT------------------------HHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred ccChhhhhccccCceEecccCcccc------------------------cchhhHhhcccccEEEccCCccccccccccc
Confidence 5 67888999999999999876432 121 3457899999999999875321 1 2
Q ss_pred ccCCCCcccEEECcCCCCc-----cccccccCCCCCCEEeeecCC
Q 048786 236 DIDNLHSLKELYLNRNNFV-----TLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 236 ~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~ 275 (862)
....+++|+.|++++|.+. .++..+..+++|+.|++++|.
T Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred hhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 2345789999999999776 345566778899999999986
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=279.44 Aligned_cols=262 Identities=13% Similarity=0.013 Sum_probs=177.8
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCcc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTS 87 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~ 87 (862)
++|++++++++.+|..+. ++|++|++++|......|..+.++++|++|++++|......|..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 689999999999998776 899999999976555555679999999999999987666668899999999999999999
Q ss_pred CcccCccCCCCCCCCEEEccCCCCcc-cccccccCCCCCCEEEecCCCCCCCCCcccCCCCcc--cEEEccCCcC--c-C
Q 048786 88 IAEVPSSIELLPGLELLYLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESL--EELDVSGTAI--R-R 161 (862)
Q Consensus 88 i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L--~~L~l~~~~~--~-~ 161 (862)
+..+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..++.+++| +.|++++|.+ . .
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence 9999987 89999999999998655 478889999999999999977544 346667777 9999999987 3 4
Q ss_pred CCchhhccC-CccEEEccCCCCCCCcccc--ccccccccccCCCCC-------ccccccCcCCCCCccEEEccCCCCCCC
Q 048786 162 PTSSIFLMK-NLRSLYFSGCNEPPASASW--HLHLPFNLLGKSSCP-------VALMLPSLTGVCSLTKLDLSDCGLGEA 231 (862)
Q Consensus 162 ~~~~l~~l~-~L~~L~L~~~~~~~~~~~~--~~~~~l~~l~~~~~~-------~~~~lp~l~~l~~L~~L~Ls~~~l~~~ 231 (862)
.|..+..+. ....+++.+|......... .....+..+....+. ....+|.+..+++|+.|++++|.+.+.
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 455555544 2234455555432211100 001112222222221 222334455566666666666554321
Q ss_pred CCCccc--CCCCcccEEECcCCCCc-cccccc-----cCCCCCCEEeeecCCC
Q 048786 232 AIPSDI--DNLHSLKELYLNRNNFV-TLPASI-----SGLLNLEELELEDCKR 276 (862)
Q Consensus 232 ~lp~~l--~~l~~L~~L~L~~n~l~-~lp~~l-----~~l~~L~~L~L~~c~~ 276 (862)
.+.... ...++|++|++++|.+. .+|..+ +.+++|+.++++++..
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 111000 01246666666666666 666666 6666666666666653
No 19
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-26 Score=265.37 Aligned_cols=246 Identities=20% Similarity=0.251 Sum_probs=180.6
Q ss_pred CCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCC-------------CEEEeeCCCCCCccc
Q 048786 3 SMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCL-------------RTLELSGCSKLKKFP 69 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L-------------~~L~L~~c~~l~~lp 69 (862)
+.++|++|++++++++++|.+++++++|++|++++|.....+|..++++.+| ++|++++|. ++.+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 3578999999999999999999999999999999988777899999988875 999999974 66666
Q ss_pred hhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcc
Q 048786 70 QIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESL 149 (862)
Q Consensus 70 ~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L 149 (862)
.. .++|++|++++|.+..+|.. +++|++|++++|. +..+|.. .++|++|++++|... .+| .++.+++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCC-CCc-ccCCCCCC
Confidence 63 36899999999999988864 4789999999875 4445432 268999999997554 477 58999999
Q ss_pred cEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCC
Q 048786 150 EELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLG 229 (862)
Q Consensus 150 ~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~ 229 (862)
++|++++|.++.+|..+ .+|++|++++|.... +|.+..+++|++|++++|.+.
T Consensus 156 ~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~------------------------l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 156 KIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE------------------------LPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS------------------------CCCCTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcCcccCCCc---ccccEEECcCCcCCc------------------------CccccCCCCCCEEECCCCcCC
Confidence 99999999998877643 589999999886432 445778899999999999986
Q ss_pred CCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCCCCCCcEEeccCC
Q 048786 230 EAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQIPPNLQFVRANGC 295 (862)
Q Consensus 230 ~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C 295 (862)
+ +|... ++|++|++++|.+..+|. ++.+++|++|++++|. ++.+|..+++|+.|++.++
T Consensus 209 ~--l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 209 K--LPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDN 267 (454)
T ss_dssp S--CCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSS
T ss_pred c--CCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCcccccccccCEEECCCC
Confidence 4 55432 589999999999999984 8899999999999975 7788888889998888765
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=3.9e-26 Score=281.70 Aligned_cols=294 Identities=19% Similarity=0.169 Sum_probs=220.4
Q ss_pred CCCCCCCcEEEeecC-CCccc-CccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchh--hcCCC
Q 048786 1 MASMKDLSDLYLDGT-SITEV-PSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQI--VASME 76 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~-~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~--i~~l~ 76 (862)
|+++++|++|+|++| .+..+ |..++++++|++|+|++|......|..+.++++|++|+|++|......|.. +++++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 578999999999998 45577 678999999999999998766666889999999999999998766666665 89999
Q ss_pred CCcEEEccCccCcccC--ccCCCCCCCCEEEccCCCCcccccccccCC--CCCCEEEecCCCCCCCCCcccCCCCc----
Q 048786 77 DLSKLYLDGTSIAEVP--SSIELLPGLELLYLNECKNLVRLPSSINGL--KSLKTLNLSGCCKLENVPDTLGKVES---- 148 (862)
Q Consensus 77 ~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l--~~L~~L~L~~c~~l~~lp~~l~~l~~---- 148 (862)
+|++|++++|.+..++ ..++++++|++|++++|......+..+..+ ++|+.|++++|......|..++.+.+
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 9999999999998764 569999999999999998777777777777 89999999999888877777776665
Q ss_pred --ccEEEccCCcCc-CCCchhhc---cCCccEEEccCCCCCCC--------cccc---c-cccccccccCCCCCcccccc
Q 048786 149 --LEELDVSGTAIR-RPTSSIFL---MKNLRSLYFSGCNEPPA--------SASW---H-LHLPFNLLGKSSCPVALMLP 210 (862)
Q Consensus 149 --L~~L~l~~~~~~-~~~~~l~~---l~~L~~L~L~~~~~~~~--------~~~~---~-~~~~l~~l~~~~~~~~~~lp 210 (862)
|+.|++++|.+. ..+..+.. ...++.|.+..+..... .... . ....+..+....+......|
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 999999999765 33433332 24566666652221100 0000 0 01223444444554444444
Q ss_pred C-cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccc-cccccCCCCCCEEeeecCCCCCcCCC----CC
Q 048786 211 S-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTL-PASISGLLNLEELELEDCKRLQSLPQ----IP 284 (862)
Q Consensus 211 ~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~L~~lp~----lp 284 (862)
. +..+++|+.|++++|.+.. ..|..+..+++|++|+|++|.+..+ |..+..+++|+.|++++|. +..++. -.
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l 361 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFL 361 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSC
T ss_pred hhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence 4 7788888889998888863 3466778888889999988888766 5678888888899888884 566553 24
Q ss_pred CCCcEEeccCCC
Q 048786 285 PNLQFVRANGCS 296 (862)
Q Consensus 285 ~sL~~L~i~~C~ 296 (862)
++|+.|++.++.
T Consensus 362 ~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 362 EKLQTLDLRDNA 373 (844)
T ss_dssp CCCCEEEEETCC
T ss_pred CCCCEEECCCCC
Confidence 778888887763
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.6e-24 Score=247.54 Aligned_cols=231 Identities=23% Similarity=0.380 Sum_probs=129.8
Q ss_pred CCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 4 MKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+++|+.|++.++.++.+|. +..+++|++|++++|. ++.+|. +.++++|++|++++|.. ..++. ++++++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCc-cCCchh-hhccccCCEEECCCCcc-ccChh-hcCCCCCCEEEC
Confidence 3566777777777766663 6667777777777643 445554 66677777777776533 33333 666777777777
Q ss_pred cCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCC
Q 048786 84 DGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPT 163 (862)
Q Consensus 84 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 163 (862)
++|.+..++. ++.+++|++|++++|. +..++. +..+++|++|++.+ ....++ .++.+++|+.|++++|.+..++
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~--~~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGN--QVTDLK-PLANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEE--SCCCCG-GGTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCC--cccCch-hhccCCCCCEEECcCCcCCCCh
Confidence 7776666654 6667777777776654 333443 66666677776653 122222 2566666666666666655543
Q ss_pred chhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcc
Q 048786 164 SSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSL 243 (862)
Q Consensus 164 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 243 (862)
.+..+++|+.|++++|.... ++.+..+++|++|++++|.+.+ + ..+..+++|
T Consensus 194 -~l~~l~~L~~L~l~~n~l~~------------------------~~~~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L 245 (466)
T 1o6v_A 194 -VLAKLTNLESLIATNNQISD------------------------ITPLGILTNLDELSLNGNQLKD--I-GTLASLTNL 245 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCCC------------------------CGGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTC
T ss_pred -hhccCCCCCEEEecCCcccc------------------------cccccccCCCCEEECCCCCccc--c-hhhhcCCCC
Confidence 24555555555555554321 1113334555555555555442 2 234445555
Q ss_pred cEEECcCCCCccccccccCCCCCCEEeeecC
Q 048786 244 KELYLNRNNFVTLPASISGLLNLEELELEDC 274 (862)
Q Consensus 244 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c 274 (862)
+.|++++|.+..++. +..+++|+.|++++|
T Consensus 246 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 246 TDLDLANNQISNLAP-LSGLTKLTELKLGAN 275 (466)
T ss_dssp SEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred CEEECCCCccccchh-hhcCCCCCEEECCCC
Confidence 555555555554443 444444544444444
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.1e-24 Score=256.75 Aligned_cols=260 Identities=17% Similarity=0.096 Sum_probs=179.4
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEcc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~ 84 (862)
...+++++++++++.+|..+. ++|++|++++|......|..+.++++|++|++++|......|..++++++|++|+++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 345789999999999998665 899999999976555445679999999999999986665668889999999999999
Q ss_pred CccCcccCccCCCCCCCCEEEccCCCCcc-cccccccCCCCCCEEEecCCCCCCCCCcccCCCCcc--cEEEccCCcC--
Q 048786 85 GTSIAEVPSSIELLPGLELLYLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESL--EELDVSGTAI-- 159 (862)
Q Consensus 85 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L--~~L~l~~~~~-- 159 (862)
+|.+..+|.. .+++|++|++++|.... .+|..++++++|++|++++|..... .++.+++| +.|++++|.+
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 9999999987 89999999999987544 3457899999999999999766543 34444555 9999999877
Q ss_pred cC-CCchhh--------------------------ccCCccEEEccCCCCC--------------CCc------------
Q 048786 160 RR-PTSSIF--------------------------LMKNLRSLYFSGCNEP--------------PAS------------ 186 (862)
Q Consensus 160 ~~-~~~~l~--------------------------~l~~L~~L~L~~~~~~--------------~~~------------ 186 (862)
.. .|..+. .+++|+.|+++++... ...
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 32 233333 2446666666665310 000
Q ss_pred ------cccccccccccccCCCCCccccccC-c-----CCCCCccEEEccCCCCCCCCCCc-ccCC---CCcccEEECcC
Q 048786 187 ------ASWHLHLPFNLLGKSSCPVALMLPS-L-----TGVCSLTKLDLSDCGLGEAAIPS-DIDN---LHSLKELYLNR 250 (862)
Q Consensus 187 ------~~~~~~~~l~~l~~~~~~~~~~lp~-l-----~~l~~L~~L~Ls~~~l~~~~lp~-~l~~---l~~L~~L~L~~ 250 (862)
........+..+....+.....+|. + ..++.|+.+++..+.+ .+|. ++.. ..+|++|++++
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~---~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF---LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC---SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee---ecChhhhhhhhccCcceEEEccC
Confidence 0000001333444444444444554 3 4555666666666654 3452 2222 25799999999
Q ss_pred CCCccccccccCCCCCCEEeeecCC
Q 048786 251 NNFVTLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 251 n~l~~lp~~l~~l~~L~~L~L~~c~ 275 (862)
|.+..++. ...+++|++|++++|.
T Consensus 341 n~~~~~~~-~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 341 TPFIHMVC-PPSPSSFTFLNFTQNV 364 (562)
T ss_dssp SCCCCCCC-CSSCCCCCEEECCSSC
T ss_pred CCcccccC-ccCCCCceEEECCCCc
Confidence 98875541 2678888888888875
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=253.87 Aligned_cols=216 Identities=18% Similarity=0.168 Sum_probs=169.0
Q ss_pred cEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCccc-CccCCCCCCCCEEEccCC
Q 048786 31 ELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEV-PSSIELLPGLELLYLNEC 109 (862)
Q Consensus 31 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 109 (862)
++|++++| .++.+|..+. ++|++|++++|......|..++++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899985 5778998776 8999999999876666668999999999999999999987 678999999999999998
Q ss_pred CCcccccccccCCCCCCEEEecCCCCCC-CCCcccCCCCcccEEEccCCcCcCCCchhhccCCc--cEEEccCCCCCCCc
Q 048786 110 KNLVRLPSSINGLKSLKTLNLSGCCKLE-NVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNL--RSLYFSGCNEPPAS 186 (862)
Q Consensus 110 ~~l~~lp~~l~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L--~~L~L~~~~~~~~~ 186 (862)
. ++.+|.. .+++|++|++++|.... .+|..++.+++|+.|++++|.+.. ..+..+++| +.|++++|.....
T Consensus 80 ~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~- 153 (520)
T 2z7x_B 80 K-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGE- 153 (520)
T ss_dssp C-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTS-
T ss_pred c-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccc-
Confidence 6 4578876 89999999999987765 578899999999999999999876 456778888 9999998875110
Q ss_pred cccccccccccccCCCCCccccccC-cCCCC-CccEEEccCCCCCCCCCCcccCCCCcccEEECcCCC-------Ccccc
Q 048786 187 ASWHLHLPFNLLGKSSCPVALMLPS-LTGVC-SLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNN-------FVTLP 257 (862)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~-~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~-------l~~lp 257 (862)
...|. +..+. ....+++++|.+.+...+..+..+++|+.|++++|. +....
T Consensus 154 --------------------~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 154 --------------------KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp --------------------SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred --------------------ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence 01111 22222 233567777877654445567788999999998886 44333
Q ss_pred ccccCCCCCCEEeeecCC
Q 048786 258 ASISGLLNLEELELEDCK 275 (862)
Q Consensus 258 ~~l~~l~~L~~L~L~~c~ 275 (862)
+.++.+++|+.|++++|.
T Consensus 214 ~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 214 AKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp HGGGGCTTCCEEEEEEEE
T ss_pred hhhccccchhhccccccc
Confidence 477888899999988764
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.8e-24 Score=246.28 Aligned_cols=112 Identities=24% Similarity=0.123 Sum_probs=88.7
Q ss_pred hhhccccCcEEecCCCccCcccCcCccccCcccEEecCCCCCCccCcccccCCCCccEEEeeCcccccc-CchhhccCcC
Q 048786 676 AIELLFGLVQLTLNGCKNLERLPRTISALKYLSTLNLSGLSKFREFPEITSSRDQLLEIHLEGTAIRGL-PASIELLSGN 754 (862)
Q Consensus 676 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L 754 (862)
.++.+++|++|+++++.--...|..+.++++|++|++++|.--+..|..+..+++|++|+|+++.+..+ |..++.+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 456677889999988764444466788889999999998744333366778889999999999888876 7788899999
Q ss_pred cEEecCCCcccccCCcc-CCCCCCcCEEccCCCCC
Q 048786 755 ILSNLKDCKNLKSLPST-INGLRSLRMMYPSGCSK 788 (862)
Q Consensus 755 ~~L~l~~c~~L~~LP~~-i~~L~sL~~L~i~~C~~ 788 (862)
++|+++++. ++.+|.. ++.+++|++|++++++-
T Consensus 374 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 374 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 999999986 8888864 47899999999988763
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=5.3e-23 Score=245.46 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=72.8
Q ss_pred hccccCcEEecCCCccCcccCcCccccCcccEEecCCCCCCcc-CcccccCCCCccEEEeeCcccccc-CchhhccCcCc
Q 048786 678 ELLFGLVQLTLNGCKNLERLPRTISALKYLSTLNLSGLSKFRE-FPEITSSRDQLLEIHLEGTAIRGL-PASIELLSGNI 755 (862)
Q Consensus 678 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-~p~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~ 755 (862)
..+.+++.++++++.--...|..+..+++|++|+++++..... .|+.+..+++|++|+|++++++.+ |..++.+++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 3445556666655443333444455566666666666554443 345556666666666666666655 44556666666
Q ss_pred EEecCCCcccccCCc-cCCCCCCcCEEccCCCCCCccc-ccccCCc-cccceecccCC
Q 048786 756 LSNLKDCKNLKSLPS-TINGLRSLRMMYPSGCSKLKNV-TETLGKV-ESLEVRLSSWN 810 (862)
Q Consensus 756 ~L~l~~c~~L~~LP~-~i~~L~sL~~L~i~~C~~l~~l-p~~~~~l-~~L~~~~~~~~ 810 (862)
+|+++++. +.++|. .++.+++|++|+++++. |..+ |+.++.+ ++|+++..+.|
T Consensus 522 ~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 522 VLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSC-CCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCc-CCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCC
Confidence 66666664 555543 35566666666666653 3333 3344554 45665554444
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=7.5e-24 Score=242.19 Aligned_cols=244 Identities=25% Similarity=0.355 Sum_probs=198.3
Q ss_pred CCCCCCCcEEEeecCCCc-ccCccccCCCCC-------------cEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCC
Q 048786 1 MASMKDLSDLYLDGTSIT-EVPSSIELLTGL-------------ELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLK 66 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~ 66 (862)
|+++++|++|+++++.+. .+|.+++++.+| ++|++++|. ++.+|. + .++|++|++++|. ++
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~-~--~~~L~~L~l~~n~-l~ 104 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE-L--PPHLESLVASCNS-LT 104 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS-C--CTTCSEEECCSSC-CS
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC-C--cCCCCEEEccCCc-CC
Confidence 467889999999998886 889999988875 999999965 777776 2 4799999999964 45
Q ss_pred ccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCC
Q 048786 67 KFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKV 146 (862)
Q Consensus 67 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l 146 (862)
.+|.. +.+|++|++++|.+..+|... ++|++|++++|.. +.+| .++++++|++|++++|. +..+|..+
T Consensus 105 ~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~--- 172 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP--- 172 (454)
T ss_dssp SCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---
T ss_pred ccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCCc-CcccCCCc---
Confidence 57754 478999999999998877532 7999999999864 4588 59999999999999975 44566543
Q ss_pred CcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCC
Q 048786 147 ESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDC 226 (862)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~ 226 (862)
.+|+.|++++|.++.+| .+..+++|+.|++++|.... +|.. .++|++|++++|
T Consensus 173 ~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~------------------------l~~~--~~~L~~L~l~~n 225 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK------------------------LPDL--PLSLESIVAGNN 225 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS------------------------CCCC--CTTCCEEECCSS
T ss_pred ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc------------------------CCCC--cCcccEEECcCC
Confidence 58999999999999987 58899999999999987432 2221 258999999999
Q ss_pred CCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCCCCCCcEEeccCC
Q 048786 227 GLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQIPPNLQFVRANGC 295 (862)
Q Consensus 227 ~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C 295 (862)
.+. .+|. +..+++|++|++++|.+..+|.. +++|+.|++++|. ++.+|..+++|+.|++.++
T Consensus 226 ~l~--~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 226 ILE--ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp CCS--SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred cCC--cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 986 4774 88999999999999999998864 4899999999986 7778888888888887654
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-23 Score=235.54 Aligned_cols=301 Identities=17% Similarity=0.158 Sum_probs=229.9
Q ss_pred CCCCcEEEeecCCCcccCcc-ccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 4 MKDLSDLYLDGTSITEVPSS-IELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
++++++|+++++.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|......|..++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57899999999999999975 68899999999999764444445789999999999999876666677899999999999
Q ss_pred ccCccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 83 LDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 83 L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
+++|.+..+|.. ++.+++|++|++++|......|..+..+++|++|++++|.... + .++.+++|+.|++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeecccccccc
Confidence 999999999987 5899999999999998766667779999999999999976543 3 35677888888888887765
Q ss_pred CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLH 241 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 241 (862)
+ ...++|+.|++++|....... .....+..+....+.... .+.+..+++|++|++++|.+.+ ..|..+..++
T Consensus 201 ~----~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~ 272 (390)
T 3o6n_A 201 L----AIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQ 272 (390)
T ss_dssp E----ECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCS
T ss_pred c----CCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCC-cChhHccccc
Confidence 3 234578888888776543321 112334455555554433 3557788899999999998863 3577788889
Q ss_pred cccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCC---CCCCcEEeccCCCCceeecCccccccceeeeecc
Q 048786 242 SLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQI---PPNLQFVRANGCSSLVTLFGALKLCRSKYTIINC 317 (862)
Q Consensus 242 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~~~~~~~~~~l~i~~C 317 (862)
+|++|++++|.+..+|..+..+++|+.|++++|+ ++.+|.. .++|+.|++.+++ ++.++......+..+.+.++
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 273 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred cCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCC
Confidence 9999999999998888888888999999999884 6666642 3788899888875 55555333334444444443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.1e-23 Score=241.46 Aligned_cols=296 Identities=20% Similarity=0.175 Sum_probs=218.3
Q ss_pred CCCcEEEeecCCCccc-CccccCCCCCcEEEEeCCCCCCcc-ccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 5 KDLSDLYLDGTSITEV-PSSIELLTGLELLTLKGCKNLSSL-PVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..+..+++|++|++++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6799999999999977 678999999999999998766555 45688999999999999877666788999999999999
Q ss_pred ccCccCcc-cCcc--CCCCCCCCEEEccCCCCccccccc-ccCCCCCCEEEecCCCCCCCCCcccCCC--CcccEEEccC
Q 048786 83 LDGTSIAE-VPSS--IELLPGLELLYLNECKNLVRLPSS-INGLKSLKTLNLSGCCKLENVPDTLGKV--ESLEELDVSG 156 (862)
Q Consensus 83 L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l--~~L~~L~l~~ 156 (862)
+++|.+.. +|.. ++.+++|++|++++|......|.. +.++++|++|++++|......+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 99999985 4444 889999999999999866666765 7899999999999987766666666554 4556666666
Q ss_pred CcCcCCCch---------hhccCCccEEEccCCCCCCCccc---------------------------------------
Q 048786 157 TAIRRPTSS---------IFLMKNLRSLYFSGCNEPPASAS--------------------------------------- 188 (862)
Q Consensus 157 ~~~~~~~~~---------l~~l~~L~~L~L~~~~~~~~~~~--------------------------------------- 188 (862)
|.+..++.. +..+++|++|++++|........
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 655544321 12334555555555543210000
Q ss_pred cc-cccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccc-cccccCCCC
Q 048786 189 WH-LHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTL-PASISGLLN 265 (862)
Q Consensus 189 ~~-~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~ 265 (862)
.. ....+..+....+......|. +..+++|++|++++|.+.+ ..|..+..+++|++|+|++|.+..+ |..++.+++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-cChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 00 002344555566666555565 7888999999999998863 3466788899999999999988866 567788999
Q ss_pred CCEEeeecCCCCCcC-CC---CCCCCcEEeccCCCCceeecC
Q 048786 266 LEELELEDCKRLQSL-PQ---IPPNLQFVRANGCSSLVTLFG 303 (862)
Q Consensus 266 L~~L~L~~c~~L~~l-p~---lp~sL~~L~i~~C~~L~~l~~ 303 (862)
|++|++++|. ++.+ |. -.++|+.|++.++ .++.++.
T Consensus 349 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 349 LEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CCEEECCCCc-ccccChhhccccccccEEECCCC-ccccCCH
Confidence 9999999986 4444 43 2478899999886 4666654
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.2e-24 Score=236.72 Aligned_cols=250 Identities=20% Similarity=0.278 Sum_probs=190.1
Q ss_pred CCCcEEEeecCCCc---ccCccccCCCCCcEEEEeC-CCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcE
Q 048786 5 KDLSDLYLDGTSIT---EVPSSIELLTGLELLTLKG-CKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSK 80 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~Ls~-c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 80 (862)
.++++|+++++++. .+|..++++++|++|++++ +.....+|..+.++++|++|++++|.....+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888888888887 5788888888888888885 5555577888888888888888887666678888888888888
Q ss_pred EEccCccCc-ccCccCCCCCCCCEEEccCCCCcccccccccCCC-CCCEEEecCCCCCCCCCcccCCCCcccEEEccCCc
Q 048786 81 LYLDGTSIA-EVPSSIELLPGLELLYLNECKNLVRLPSSINGLK-SLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTA 158 (862)
Q Consensus 81 L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 158 (862)
|++++|.+. .+|..++.+++|++|++++|.....+|..++.++ +|++|++++|.....+|..++.+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 888888887 6777788888888888888876667888888887 888888888776667777777776 8888888887
Q ss_pred CcC-CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCccc
Q 048786 159 IRR-PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDI 237 (862)
Q Consensus 159 ~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l 237 (862)
+.. .+..+..+++|+.|++++|.... .+|.+..+++|++|++++|.+. +.+|.++
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l 264 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF-----------------------DLGKVGLSKNLNGLDLRNNRIY-GTLPQGL 264 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC-----------------------BGGGCCCCTTCCEEECCSSCCE-ECCCGGG
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee-----------------------ecCcccccCCCCEEECcCCccc-CcCChHH
Confidence 773 45666777888888887765431 2333556677888888888775 3467777
Q ss_pred CCCCcccEEECcCCCCc-cccccccCCCCCCEEeeecCCCCCcC
Q 048786 238 DNLHSLKELYLNRNNFV-TLPASISGLLNLEELELEDCKRLQSL 280 (862)
Q Consensus 238 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~L~~l 280 (862)
..+++|+.|+|++|+++ .+|.. +.+++|+.|++.+|+.+...
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 77788888888888777 55544 67777777777777755443
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.4e-22 Score=223.43 Aligned_cols=282 Identities=18% Similarity=0.271 Sum_probs=227.5
Q ss_pred CCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 3 SMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
.+++|++|+++++.+..++. ++.+++|++|++++| .++.+|. +..+++|++|++++| .++.+| .++++++|++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 46789999999999999874 899999999999996 5667777 889999999999997 455555 689999999999
Q ss_pred ccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC
Q 048786 83 LDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 83 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
+++|.+..++. +..+++|++|++++|.....++. +..+++|++|++++|..... +. ++.+++|+.|++++|.+..+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCccccc
Confidence 99999998877 88999999999999987777665 89999999999999765443 33 78899999999999999887
Q ss_pred CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCc
Q 048786 163 TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHS 242 (862)
Q Consensus 163 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 242 (862)
+. +..+++|+.|++.+|....... ......+..+....+..... +.+..+++|++|++++|.+.+ + ..+..+++
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~ 266 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISD--I-NAVKDLTK 266 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC--C-GGGTTCTT
T ss_pred cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-cchhcCCCCCEEECCCCccCC--C-hhHhcCCC
Confidence 76 7889999999999987655433 33334456666666655433 338888999999999998865 3 45788899
Q ss_pred ccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC---CCCCCcEEeccCCCCceee
Q 048786 243 LKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ---IPPNLQFVRANGCSSLVTL 301 (862)
Q Consensus 243 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~i~~C~~L~~l 301 (862)
|++|++++|.+..++ .+..+++|+.|++++|+.-...|. -.++|+.|++.+|+ ++.+
T Consensus 267 L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 267 LKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred cCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 999999999888875 578889999999999864333332 34789999998886 4444
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.6e-23 Score=243.15 Aligned_cols=301 Identities=17% Similarity=0.158 Sum_probs=222.6
Q ss_pred CCCCcEEEeecCCCcccCcc-ccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 4 MKDLSDLYLDGTSITEVPSS-IELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
+++++.|+++++.+..+|.. ++.+++|++|++++|......|..+..+++|++|+|++|......|..++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 47889999999999999875 57899999999999765444455799999999999999876666667789999999999
Q ss_pred ccCccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 83 LDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 83 L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
+++|.+..+|.. ++.+++|++|++++|......|..++.+++|++|++++|.... + .++.+++|+.|++++|.+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C--CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c--ChhhhhhhhhhhcccCcccc
Confidence 999999999887 5899999999999998766667789999999999999976543 3 25667888888888887764
Q ss_pred CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLH 241 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 241 (862)
+ ...++|+.|++++|........ ....+..+....+.... .+.+..+++|+.|++++|.+. +..|..+..++
T Consensus 207 l----~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 278 (597)
T 3oja_B 207 L----AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQ 278 (597)
T ss_dssp E----ECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC-EEESGGGTTCS
T ss_pred c----cCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccC-CCCHHHhcCcc
Confidence 3 2345677777777765432211 11234445555554433 345777888888888888876 34567778888
Q ss_pred cccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCC---CCCCcEEeccCCCCceeecCccccccceeeeecc
Q 048786 242 SLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQI---PPNLQFVRANGCSSLVTLFGALKLCRSKYTIINC 317 (862)
Q Consensus 242 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~~~~~~~~~~l~i~~C 317 (862)
+|+.|+|++|.+..+|..+..+++|+.|++++|. +..+|.. .++|+.|++.+|. +..++....+.+..+.+.++
T Consensus 279 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp SCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCC
Confidence 8888888888888888777778888888888875 5566642 3778888888765 44444333334444444443
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=7.2e-23 Score=236.17 Aligned_cols=288 Identities=21% Similarity=0.226 Sum_probs=185.0
Q ss_pred CCCcEEEeecCCCcccC-ccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccc-hhhcCCCCCcEEE
Q 048786 5 KDLSDLYLDGTSITEVP-SSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFP-QIVASMEDLSKLY 82 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~ 82 (862)
+++++|+|++|.++.++ ..+..+++|++|+|++|......|..+.++++|++|+|++|. ++.+| ..++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 46778888888877664 567778888888888765444446677778888888888764 44444 3467778888888
Q ss_pred ccCccCccc-CccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 83 LDGTSIAEV-PSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 83 L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
+++|.+..+ |..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 888877765 4457778888888888776555556667778888888888765544444457777888888888877775
Q ss_pred CC-chhhccCCccEEEccCCCCCCCccccc-cccccccccCCCCCcccccc--CcCCCCCccEEEccCCCCCCCCCCccc
Q 048786 162 PT-SSIFLMKNLRSLYFSGCNEPPASASWH-LHLPFNLLGKSSCPVALMLP--SLTGVCSLTKLDLSDCGLGEAAIPSDI 237 (862)
Q Consensus 162 ~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~lp--~l~~l~~L~~L~Ls~~~l~~~~lp~~l 237 (862)
++ ..+..+++|+.|++++|.......... ....+..+....+... .+| .+..+++|+.|++++|.+.. ..+..+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~ 268 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST-IEGSML 268 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCE-ECTTSC
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCc-cChhhc
Confidence 54 356667788888887776443221111 1112333444444333 233 25666777777777776652 223456
Q ss_pred CCCCcccEEECcCCCCccc-cccccCCCCCCEEeeecCCCCCcCCC----CCCCCcEEeccCCC
Q 048786 238 DNLHSLKELYLNRNNFVTL-PASISGLLNLEELELEDCKRLQSLPQ----IPPNLQFVRANGCS 296 (862)
Q Consensus 238 ~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C~ 296 (862)
..+++|+.|+|++|.+..+ |..+..+++|+.|++++|. ++.+|. -.++|+.|++.+++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 6667777777777776654 4466667777777777763 555543 12456666665543
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.3e-22 Score=221.75 Aligned_cols=280 Identities=20% Similarity=0.258 Sum_probs=226.7
Q ss_pred CCCCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcE
Q 048786 1 MASMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSK 80 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 80 (862)
|..+++|++|+++++.++.++. ++.+++|++|++++| .++.+|. +..+++|++|++++|. +..+|. +.++++|++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA-LQNLTNLRELYLNEDN-ISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH-HcCCCcCCEEECcCCc-ccCchh-hccCCceeE
Confidence 3568899999999999999887 899999999999997 5666664 8899999999999975 555655 889999999
Q ss_pred EEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 81 LYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 81 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
|++++|.....+..++.+++|++|++++|.. ..++. +..+++|++|++++|... .++. +..+++|+.|++++|.+.
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCCCC
Confidence 9999996665556699999999999999874 44444 888999999999997644 4444 788999999999999988
Q ss_pred CCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCC
Q 048786 161 RPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNL 240 (862)
Q Consensus 161 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 240 (862)
..+. +..+++|++|++++|....... ......+..+....+.... ++.+..+++|++|++++|.+.+ + ..+..+
T Consensus 213 ~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l 286 (347)
T 4fmz_A 213 DITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISD--I-SVLNNL 286 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC--C-GGGGGC
T ss_pred CCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCC--C-hhhcCC
Confidence 7766 7889999999999998765443 3334456666666665543 4668899999999999999875 3 457889
Q ss_pred CcccEEECcCCCCccc-cccccCCCCCCEEeeecCCCCCcCCC--CCCCCcEEeccCCC
Q 048786 241 HSLKELYLNRNNFVTL-PASISGLLNLEELELEDCKRLQSLPQ--IPPNLQFVRANGCS 296 (862)
Q Consensus 241 ~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~L~~lp~--lp~sL~~L~i~~C~ 296 (862)
++|+.|++++|.+... |..+..+++|++|++++|+ ++.++. ..++|+.|++.+|+
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 9999999999999854 5678999999999999997 555544 34788888887764
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=8.7e-22 Score=225.27 Aligned_cols=144 Identities=22% Similarity=0.262 Sum_probs=61.8
Q ss_pred CCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 4 MKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+++|++|+++++.++.+| .++.+++|++|++++|. ++.+| ++.+++|++|++++|. ++.+| ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEEC
Confidence 344444444444444444 34444444444444432 33332 4444444444444432 22222 444444444444
Q ss_pred cCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 84 DGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 84 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
++|.+..+| ++.+++|++|++++|.. +.++ ++.+++|++|++++|...+.+ .++.+++|+.|++++|.++.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 444444443 44444444444444432 2221 344444444444444333333 23344444444444444443
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=9.9e-22 Score=234.44 Aligned_cols=282 Identities=20% Similarity=0.189 Sum_probs=191.2
Q ss_pred CCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccc-cccCCCCCCCEEEeeCCCCCCccc-hhhcCCCCCcEEE
Q 048786 6 DLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLP-VTISSLKCLRTLELSGCSKLKKFP-QIVASMEDLSKLY 82 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~ 82 (862)
++++|+|++|+|+.+|. +|+++++|++|+|++|. ++.+| ..|.++++|++|+|++|. ++.+| ..|+++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 79999999999999974 79999999999999975 55565 568999999999999975 55555 5689999999999
Q ss_pred ccCccCcccCcc-CCCCCCCCEEEccCCCCcc-cccccccCCCCCCEEEecCCCCCCCCCcccCCCCcc----cEEEccC
Q 048786 83 LDGTSIAEVPSS-IELLPGLELLYLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESL----EELDVSG 156 (862)
Q Consensus 83 L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L----~~L~l~~ 156 (862)
+++|.+..+|.. ++.+++|++|++++|.... .+|..++.+++|++|++++|...+..+..++.+.++ ..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999999864 8999999999999987543 467888999999999999987655555555443332 3566666
Q ss_pred CcCcCCCchhhccCCccEEEccCCCCC------------------------------CCcc--cccc-------------
Q 048786 157 TAIRRPTSSIFLMKNLRSLYFSGCNEP------------------------------PASA--SWHL------------- 191 (862)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~L~~~~~~------------------------------~~~~--~~~~------------- 191 (862)
|.+..++........++.+.+.++... .... ....
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 666544433322223333333222100 0000 0000
Q ss_pred --------------ccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCcccc
Q 048786 192 --------------HLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLP 257 (862)
Q Consensus 192 --------------~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp 257 (862)
...+..+...... ...++.+....+|+.|++.+|.+.. ++. ..++.|+.+.+.+|.+...+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~--~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGGSCCCCSEEEEESCEESS--CCC--CBCTTCCEEEEESCCSCCBC
T ss_pred hcccccchhhhhhhhcccccccccccc-cccccccccchhhhhhhcccccccC--cCc--ccchhhhhcccccccCCCCc
Confidence 0000001111111 1223446667889999999998753 322 35678999999888776554
Q ss_pred ccccCCCCCCEEeeecCCCCCcCCC------CCCCCcEEeccCCC
Q 048786 258 ASISGLLNLEELELEDCKRLQSLPQ------IPPNLQFVRANGCS 296 (862)
Q Consensus 258 ~~l~~l~~L~~L~L~~c~~L~~lp~------lp~sL~~L~i~~C~ 296 (862)
. ...+++|+.|+++++.. ..... ...+++.|++..+.
T Consensus 366 ~-~~~l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 366 S-EVDLPSLEFLDLSRNGL-SFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp C-CCBCTTCCEEECCSSCC-BEEEECCHHHHSCSCCCEEECCSCS
T ss_pred c-cccccccccchhhcccc-ccccccccchhhhhhhhhhhccccc
Confidence 3 45689999999998753 22211 23677888776654
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=5.8e-22 Score=217.08 Aligned_cols=260 Identities=21% Similarity=0.255 Sum_probs=216.2
Q ss_pred CCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccc-cccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEcc
Q 048786 6 DLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLP-VTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~ 84 (862)
+++++++++++++.+|..+. ++|++|++++|. ++.+| ..+.++++|++|++++|......|..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 78999999999999997664 789999999975 45554 468999999999999987666668999999999999999
Q ss_pred CccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCC--CCCcccCCCCcccEEEccCCcCcCC
Q 048786 85 GTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLE--NVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 85 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
+|.+..+|..+. ++|++|++++|......+..+.++++|++|++++|.... ..+..++.+++|+.|++++|.++.+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 999999998775 799999999987665556678999999999999987643 5667788999999999999999988
Q ss_pred CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCc
Q 048786 163 TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHS 242 (862)
Q Consensus 163 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 242 (862)
|..+. ++|+.|++++|..... ....+..+++|++|++++|.+.+ ..+..+..+++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 241 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKV----------------------DAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPH 241 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEE----------------------CTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTT
T ss_pred Ccccc--ccCCEEECCCCcCCcc----------------------CHHHhcCCCCCCEEECCCCcCce-eChhhccCCCC
Confidence 87664 8999999999874321 01126788999999999999874 33457888999
Q ss_pred ccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC-C---------CCCCcEEeccCCC
Q 048786 243 LKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ-I---------PPNLQFVRANGCS 296 (862)
Q Consensus 243 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~-l---------p~sL~~L~i~~C~ 296 (862)
|++|++++|.+..+|.++..+++|++|++++|+ ++.+|. . .++++.|++.+.+
T Consensus 242 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 999999999999999999999999999999986 666663 1 2567778777765
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=9.7e-22 Score=226.01 Aligned_cols=275 Identities=20% Similarity=0.321 Sum_probs=190.2
Q ss_pred CCCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEE
Q 048786 2 ASMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKL 81 (862)
Q Consensus 2 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 81 (862)
..+++|++|++++|.++.++. ++.+++|++|++++|. +..++. +.++++|++|++++|. ++.+|. ++++++|++|
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEE
Confidence 467899999999999999887 9999999999999965 555665 8999999999999974 555555 8999999999
Q ss_pred EccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 82 YLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 82 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
++++|.+..++. ++.+++|+.|++.+ ....++. +.++++|++|++++|.. ..++ .+..+++|+.|++++|.+..
T Consensus 140 ~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 140 ELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCC
T ss_pred ECCCCccCCChh-hccCCcccEeecCC--cccCchh-hccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecCCcccc
Confidence 999999888764 77788888888763 2333333 77777788888877653 3332 36677777777777777766
Q ss_pred CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLH 241 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 241 (862)
.+. +..+++|+.|++++|...... .......+..+....+......+ +..+++|++|++++|.+.+ ++. +..++
T Consensus 214 ~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~ 287 (466)
T 1o6v_A 214 ITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN--ISP-LAGLT 287 (466)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC--CGG-GTTCT
T ss_pred ccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc--ccc-ccCCC
Confidence 544 566777777777777654332 22222334455555554433322 6667777777777776653 333 56667
Q ss_pred cccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC--CCCCCcEEeccCC
Q 048786 242 SLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ--IPPNLQFVRANGC 295 (862)
Q Consensus 242 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~--lp~sL~~L~i~~C 295 (862)
+|+.|++++|.+..++. +..+++|+.|++++|+ +..++. ..++|+.|++.+|
T Consensus 288 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp TCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS
T ss_pred ccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCC
Confidence 77777777777766654 6667777777777764 333332 2356666666665
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=2e-22 Score=220.45 Aligned_cols=220 Identities=24% Similarity=0.392 Sum_probs=153.7
Q ss_pred CCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEcc
Q 048786 28 TGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLN 107 (862)
Q Consensus 28 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 107 (862)
.++++|++++| .++.+|..+.++++|++|+|++|.. ..+|..++++++|++|++++|.+..+|..++.+++|++|+++
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCC-CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCc-cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 55566666653 3445555555566666666665433 355665666666666666666666666666666666666666
Q ss_pred CCCCccccccccc---------CCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEcc
Q 048786 108 ECKNLVRLPSSIN---------GLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFS 178 (862)
Q Consensus 108 ~~~~l~~lp~~l~---------~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~ 178 (862)
+|.....+|..++ .+++|++|++++|.. ..+|..++.+++|+.|++++|.+..+|..+..+++|+.|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 6666666665544 488888888888644 477888888888888888888888888888888888888888
Q ss_pred CCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCc-cc
Q 048786 179 GCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFV-TL 256 (862)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~l 256 (862)
+|.... .+|. +..+++|++|++++|.+. +.+|..+..+++|++|+|++|++. .+
T Consensus 238 ~n~~~~-----------------------~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 238 GCTALR-----------------------NYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp TCTTCC-----------------------BCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCcchh-----------------------hhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 876542 2333 667788888888888765 457777888888888888887654 78
Q ss_pred cccccCCCCCCEEeeecC
Q 048786 257 PASISGLLNLEELELEDC 274 (862)
Q Consensus 257 p~~l~~l~~L~~L~L~~c 274 (862)
|.+++++++|+.+++...
T Consensus 294 P~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CGGGGGSCTTCEEECCGG
T ss_pred cHHHhhccCceEEeCCHH
Confidence 888888888888877653
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.5e-22 Score=228.55 Aligned_cols=255 Identities=20% Similarity=0.218 Sum_probs=187.7
Q ss_pred CCCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEE
Q 048786 2 ASMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKL 81 (862)
Q Consensus 2 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 81 (862)
+.+++|++|++++|.++.+| ++.+++|++|++++|. ++.+| ++++++|++|++++|. ++.+| ++++++|++|
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEE
Confidence 45778888888888888875 7888888888888865 55554 7778888888888864 44455 7788888888
Q ss_pred EccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 82 YLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 82 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
++++|.+..++ ++.+++|++|++++|.....+ .++.+++|++|++++|.. +.+| ++.+++|+.|++++|.++.
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcCCe
Confidence 88888888764 778888888888888766666 377788888888888654 3354 7788888888888888877
Q ss_pred CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLH 241 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 241 (862)
++ +..+++|+.|++++|.... +| +..+++|+.|++++|.+++ +| ...++
T Consensus 206 ~~--l~~l~~L~~L~Ls~N~l~~------------------------ip-~~~l~~L~~L~l~~N~l~~--~~--~~~l~ 254 (457)
T 3bz5_A 206 LD--LNQNIQLTFLDCSSNKLTE------------------------ID-VTPLTQLTYFDCSVNPLTE--LD--VSTLS 254 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSC------------------------CC-CTTCTTCSEEECCSSCCSC--CC--CTTCT
T ss_pred ec--cccCCCCCEEECcCCcccc------------------------cC-ccccCCCCEEEeeCCcCCC--cC--HHHCC
Confidence 63 6778888888888876432 23 5567788888888888764 33 34556
Q ss_pred cccEEECcCCCCccccc---------cccCCCCCCEEeeecCCCCCcCCCCCCCCcEEeccCCCCceeec
Q 048786 242 SLKELYLNRNNFVTLPA---------SISGLLNLEELELEDCKRLQSLPQIPPNLQFVRANGCSSLVTLF 302 (862)
Q Consensus 242 ~L~~L~L~~n~l~~lp~---------~l~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~ 302 (862)
+|+.|+++++++..+.- ..+.+++|+.|++++|+.+..+|.-.++|+.|++.+|++|+.+.
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred CCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 66655555554432210 14567888888888888888888766778888888888888765
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=4.8e-22 Score=234.15 Aligned_cols=104 Identities=24% Similarity=0.204 Sum_probs=73.9
Q ss_pred CCCcEEEeecCCCcccC-ccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEVP-SSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
++|++|++++|.+..++ ..++.+++|++|++++|......|..+.++++|++|++++|. ++.+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 56778888887777766 467777888888887765444446667777778888887754 4566666 6777777777
Q ss_pred cCccCcccC--ccCCCCCCCCEEEccCCCC
Q 048786 84 DGTSIAEVP--SSIELLPGLELLYLNECKN 111 (862)
Q Consensus 84 ~~~~i~~lp--~~i~~L~~L~~L~L~~~~~ 111 (862)
++|.+..+| ..++.+++|++|++++|..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcc
Confidence 777777654 5677777777777777653
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=5.6e-22 Score=228.71 Aligned_cols=273 Identities=22% Similarity=0.266 Sum_probs=216.0
Q ss_pred CCCCCCCcEEEeecCCCccc-CccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCccchhhcCCCCC
Q 048786 1 MASMKDLSDLYLDGTSITEV-PSSIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKFPQIVASMEDL 78 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L 78 (862)
|.++++|++|+|++|.++.+ |..++++++|++|+|++|. ++.+|. .+.++++|++|+|++|......|..+.++++|
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 56789999999999999877 6789999999999999965 566664 47889999999999987777778889999999
Q ss_pred cEEEccCccCcccC-ccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCC
Q 048786 79 SKLYLDGTSIAEVP-SSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGT 157 (862)
Q Consensus 79 ~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~ 157 (862)
++|++++|.+..++ ..++.+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 99999999998764 46889999999999998654444455788888999999887766666667888888888888886
Q ss_pred cCc-CCCchhhccCCccEEEccCCCCCCCcc-ccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCC
Q 048786 158 AIR-RPTSSIFLMKNLRSLYFSGCNEPPASA-SWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIP 234 (862)
Q Consensus 158 ~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp 234 (862)
... .++.......+|+.|++++|....... .......+..+....+......+. +..+++|++|++++|.+.. ..|
T Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 289 (477)
T 2id5_A 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEP 289 (477)
T ss_dssp TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-ECT
T ss_pred ccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce-ECH
Confidence 543 455555556688888888887554331 122233455666666665544444 8889999999999999874 457
Q ss_pred cccCCCCcccEEECcCCCCccccc-cccCCCCCCEEeeecCC
Q 048786 235 SDIDNLHSLKELYLNRNNFVTLPA-SISGLLNLEELELEDCK 275 (862)
Q Consensus 235 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 275 (862)
..+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|+
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 788999999999999999998876 56889999999999987
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=9.3e-22 Score=215.69 Aligned_cols=262 Identities=17% Similarity=0.216 Sum_probs=208.5
Q ss_pred CCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC
Q 048786 6 DLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG 85 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 85 (862)
+++++++++++++.+|..+. ++|++|++++|......|..+.++++|++|++++|......|..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 68999999999999987764 6899999999764444455788999999999999866555688899999999999999
Q ss_pred ccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCC--CCCCcccCCCCcccEEEccCCcCcCCC
Q 048786 86 TSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKL--ENVPDTLGKVESLEELDVSGTAIRRPT 163 (862)
Q Consensus 86 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l--~~lp~~l~~l~~L~~L~l~~~~~~~~~ 163 (862)
|.+..+|..+. ++|++|++++|......+..+..+++|++|++++|... ...+..++.+ +|+.|++++|.++.+|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 99999888776 89999999998755444456888999999999987653 2556667777 8999999999998888
Q ss_pred chhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcc
Q 048786 164 SSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSL 243 (862)
Q Consensus 164 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 243 (862)
..+. ++|+.|++++|...... ...+..+++|+.|++++|.+.. ..+..+..+++|
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~----------------------~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 243 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIE----------------------LEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTL 243 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCC----------------------TTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTC
T ss_pred cccc--CCCCEEECCCCcCCccC----------------------HHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCC
Confidence 7654 78899999887654211 1226778899999999998864 334578888999
Q ss_pred cEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCC-----C-----CCCCcEEeccCCCCc
Q 048786 244 KELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQ-----I-----PPNLQFVRANGCSSL 298 (862)
Q Consensus 244 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~-----l-----p~sL~~L~i~~C~~L 298 (862)
++|++++|.+..+|.++..+++|+.|++++|+ ++.+|. . .++++.|++.+++-.
T Consensus 244 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccc
Confidence 99999999999999999999999999999875 666653 1 356888999888743
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.1e-22 Score=221.14 Aligned_cols=248 Identities=19% Similarity=0.225 Sum_probs=215.2
Q ss_pred CCCcEEEEeCCCCCC--ccccccCCCCCCCEEEeeC-CCCCCccchhhcCCCCCcEEEccCccCc-ccCccCCCCCCCCE
Q 048786 28 TGLELLTLKGCKNLS--SLPVTISSLKCLRTLELSG-CSKLKKFPQIVASMEDLSKLYLDGTSIA-EVPSSIELLPGLEL 103 (862)
Q Consensus 28 ~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~-c~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 103 (862)
.+++.|+++++.... .+|..+.++++|++|++++ +.....+|..++++++|++|++++|.+. .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999987666 7899999999999999996 6666789999999999999999999998 78889999999999
Q ss_pred EEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCC-cccEEEccCCcCc-CCCchhhccCCccEEEccCCC
Q 048786 104 LYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVE-SLEELDVSGTAIR-RPTSSIFLMKNLRSLYFSGCN 181 (862)
Q Consensus 104 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~-~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~L~~~~ 181 (862)
|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++++|.+. ..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999987778999999999999999999887778999999998 9999999999998 6788888887 9999999886
Q ss_pred CCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCc-ccccc
Q 048786 182 EPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFV-TLPAS 259 (862)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~ 259 (862)
... ..|. +..+++|+.|++++|.+.. .+..+..+++|++|++++|.+. .+|.+
T Consensus 209 l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 209 LEG-----------------------DASVLFGSDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEE-----------------------CCGGGCCTTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred ccC-----------------------cCCHHHhcCCCCCEEECCCCceee--ecCcccccCCCCEEECcCCcccCcCChH
Confidence 431 1222 6788999999999999863 3344788999999999999998 88999
Q ss_pred ccCCCCCCEEeeecCCCCCcCCCC--CCCCcEEeccCCCCceee
Q 048786 260 ISGLLNLEELELEDCKRLQSLPQI--PPNLQFVRANGCSSLVTL 301 (862)
Q Consensus 260 l~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~i~~C~~L~~l 301 (862)
+..+++|++|++++|+.-..+|.. .++|+.|++.+.+.+...
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred HhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCC
Confidence 999999999999999866677765 367788888888766654
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.8e-21 Score=212.86 Aligned_cols=226 Identities=25% Similarity=0.334 Sum_probs=195.9
Q ss_pred CCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 4 MKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
.+++++|++++++++.+|..++++++|++|++++|. +..+|..++++++|++|++++|. +..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 478999999999999999999999999999999975 55899999999999999999975 4589999999999999999
Q ss_pred cCcc-CcccCccCCC---------CCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEE
Q 048786 84 DGTS-IAEVPSSIEL---------LPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELD 153 (862)
Q Consensus 84 ~~~~-i~~lp~~i~~---------L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 153 (862)
++|. +..+|..++. +++|++|++++|. +..+|..++.+++|++|++++|... .+|..++.+++|+.|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 9964 4578877765 9999999999986 4589999999999999999997654 6788899999999999
Q ss_pred ccCCcCc-CCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCC
Q 048786 154 VSGTAIR-RPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEA 231 (862)
Q Consensus 154 l~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~ 231 (862)
+++|.+. .+|..+..+++|+.|++++|.... .+|. +..+++|++|+|++|++. +
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----------------------~~p~~~~~l~~L~~L~L~~n~~~-~ 291 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-----------------------TLPLDIHRLTQLEKLDLRGCVNL-S 291 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-----------------------BCCTTGGGCTTCCEEECTTCTTC-C
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchh-----------------------hcchhhhcCCCCCEEeCCCCCch-h
Confidence 9998765 668889999999999999987543 2343 778899999999999887 5
Q ss_pred CCCcccCCCCcccEEECcCCCCcccc
Q 048786 232 AIPSDIDNLHSLKELYLNRNNFVTLP 257 (862)
Q Consensus 232 ~lp~~l~~l~~L~~L~L~~n~l~~lp 257 (862)
.+|.++..+++|+.+++..+.+..++
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred hccHHHhhccCceEEeCCHHHHHHHh
Confidence 79999999999999999877555443
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=220.17 Aligned_cols=263 Identities=17% Similarity=0.191 Sum_probs=162.4
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+...+.++++++++++|..+. ++|++|++++|. ++.+|. .+.++++|++|++++|......|..++++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 334456666677777776554 477777777754 444443 5677777777777776444444556777777777777
Q ss_pred cCccCcccCcc-CCCCCCCCEEEccCCCCcccccc--cccCCCCCCEEEecCCCCCCCC-CcccCCCCcccEEEccCCcC
Q 048786 84 DGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPS--SINGLKSLKTLNLSGCCKLENV-PDTLGKVESLEELDVSGTAI 159 (862)
Q Consensus 84 ~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~ 159 (862)
++|.+..+|.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|.....+ +..++.+++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 77777777665 6777777777777765 334554 5667777777777776544443 44567777777777777776
Q ss_pred cCC-CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC--cCCCCCccEEEccCCCCCCCCCCc-
Q 048786 160 RRP-TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS--LTGVCSLTKLDLSDCGLGEAAIPS- 235 (862)
Q Consensus 160 ~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~--l~~l~~L~~L~Ls~~~l~~~~lp~- 235 (862)
... +..+..+++|++|++++|.... +|. +..+++|+.|++++|.+.......
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHIL------------------------LLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTT------------------------HHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred CccCHHHHhccccCCeecCCCCcccc------------------------chhhhhhhcccccEEECCCCcccccccccc
Confidence 654 5666677777777777765321 111 223566777777777665321110
Q ss_pred -ccCCCCcccEEECcCCCCc-----cccccccCCCCCCEEeeecCCCCCcCCCC----CCCCcEEeccCCC
Q 048786 236 -DIDNLHSLKELYLNRNNFV-----TLPASISGLLNLEELELEDCKRLQSLPQI----PPNLQFVRANGCS 296 (862)
Q Consensus 236 -~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~L~~lp~l----p~sL~~L~i~~C~ 296 (862)
.....+.++.+++.++.+. .+|.++..+++|+.|++++|. ++.+|.- .++|+.|++.+++
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 1123455666666665554 466667777777777777764 5566541 3566666666654
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4.9e-21 Score=214.83 Aligned_cols=280 Identities=18% Similarity=0.149 Sum_probs=219.6
Q ss_pred CCCCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchh-hcCCCCCc
Q 048786 2 ASMKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQI-VASMEDLS 79 (862)
Q Consensus 2 ~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~ 79 (862)
.++++|++|+++++.++.++. .++.+++|++|++++|......|..+.++++|++|++++|. ++.+|.. ++++++|+
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCc
Confidence 457899999999999998875 88999999999999977555556668999999999999974 5566665 68999999
Q ss_pred EEEccCccCcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCc
Q 048786 80 KLYLDGTSIAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTA 158 (862)
Q Consensus 80 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 158 (862)
+|++++|.+..++. .++.+++|++|++++|... .++ +..+++|++|++++|... .+....+|++|++++|.
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~l~~L~~L~l~~n~l~-----~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGGCTTCSEEECCSSCCS-----EEECCSSCSEEECCSSC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc--cccccccceeeccccccc-----ccCCCCcceEEECCCCe
Confidence 99999999998754 5899999999999998743 333 567888999988886432 22344577788888877
Q ss_pred CcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCccc
Q 048786 159 IRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDI 237 (862)
Q Consensus 159 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l 237 (862)
+..++... .++|+.|++++|..... ........+..+....+......|. +..+++|++|++++|.+.. +|..+
T Consensus 217 l~~~~~~~--~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~ 291 (390)
T 3o6n_A 217 INVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYG 291 (390)
T ss_dssp CCEEECCC--CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSS
T ss_pred eeeccccc--cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCccc
Confidence 77665432 46777777777765543 2222334455666666665555554 8889999999999999965 77778
Q ss_pred CCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCC-CCCCCCcEEeccCCC
Q 048786 238 DNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLP-QIPPNLQFVRANGCS 296 (862)
Q Consensus 238 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp-~lp~sL~~L~i~~C~ 296 (862)
..+++|++|++++|.+..+|..+..+++|++|++++|+ ++.+| ...++|+.|++.+++
T Consensus 292 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence 88999999999999999999999999999999999987 55555 345788888888764
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.9e-20 Score=205.03 Aligned_cols=242 Identities=23% Similarity=0.260 Sum_probs=203.3
Q ss_pred CCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 4 MKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
.++|++|++++|+++.++. .++.+++|++|++++|......|..+..+++|++|++++|. ++.+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEE
Confidence 3689999999999998876 78999999999999976655558889999999999999964 667787665 7999999
Q ss_pred ccCccCcccCcc-CCCCCCCCEEEccCCCCcc--cccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcC
Q 048786 83 LDGTSIAEVPSS-IELLPGLELLYLNECKNLV--RLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAI 159 (862)
Q Consensus 83 L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 159 (862)
+++|.+..++.. ++.+++|++|++++|.... ..+..+..+++|++|++++|. +..+|..+. ++|+.|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcC
Confidence 999999988764 8999999999999987643 567778999999999999975 445666554 8999999999999
Q ss_pred cCC-CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCcccccc-CcCCCCCccEEEccCCCCCCCCCCccc
Q 048786 160 RRP-TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLP-SLTGVCSLTKLDLSDCGLGEAAIPSDI 237 (862)
Q Consensus 160 ~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp-~l~~l~~L~~L~Ls~~~l~~~~lp~~l 237 (862)
... +..+..+++|+.|++++|..... .+ .+..+++|++|++++|.+. .+|.++
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------------~~~~~~~l~~L~~L~L~~N~l~--~lp~~l 259 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAV-----------------------DNGSLANTPHLRELHLNNNKLV--KVPGGL 259 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEE-----------------------CTTTGGGSTTCCEEECCSSCCS--SCCTTT
T ss_pred CccCHHHhcCCCCCCEEECCCCcCcee-----------------------ChhhccCCCCCCEEECCCCcCc--cCChhh
Confidence 876 57888999999999999875421 11 2667889999999999997 489999
Q ss_pred CCCCcccEEECcCCCCccccccc-c------CCCCCCEEeeecCCC
Q 048786 238 DNLHSLKELYLNRNNFVTLPASI-S------GLLNLEELELEDCKR 276 (862)
Q Consensus 238 ~~l~~L~~L~L~~n~l~~lp~~l-~------~l~~L~~L~L~~c~~ 276 (862)
..+++|++|++++|.++.+|... . ..+.|+.|++.+++.
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 99999999999999999887532 2 357899999999874
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=213.83 Aligned_cols=242 Identities=23% Similarity=0.288 Sum_probs=184.9
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 7 LSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 7 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
.+.++..+.+++.+|..+. +++++|+|++|......+..+.++++|++|+|++|......+..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4677788888888887665 68899999986644444567888999999999987655555678888999999999999
Q ss_pred cCcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCc-ccCCCCcccEEEccCCcCcCCCc
Q 048786 87 SIAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPD-TLGKVESLEELDVSGTAIRRPTS 164 (862)
Q Consensus 87 ~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~ 164 (862)
.+..+|. .+..+++|++|++++|......+..+..+++|++|++++|..+..++. .+..+++|+.|++++|.++.+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 8888876 488889999999998875444445688889999999988877776665 57888889999998888887764
Q ss_pred hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCcccccc-CcCCCCCccEEEccCCCCCCCCCCcccCCCCcc
Q 048786 165 SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLP-SLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSL 243 (862)
Q Consensus 165 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 243 (862)
+..+++|+.|++++|.... ..| .+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 257 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSA-----------------------IRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSL 257 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTC
T ss_pred -cCCCcccCEEECCCCccCc-----------------------cChhhhccCccCCEEECCCCceeE-EChhhhcCCCCC
Confidence 6677888888888776432 112 26677788888888887763 345667778888
Q ss_pred cEEECcCCCCccccc-cccCCCCCCEEeeecCC
Q 048786 244 KELYLNRNNFVTLPA-SISGLLNLEELELEDCK 275 (862)
Q Consensus 244 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 275 (862)
+.|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 888888888887765 35667788888887775
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.6e-20 Score=214.93 Aligned_cols=242 Identities=25% Similarity=0.277 Sum_probs=175.0
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 7 LSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 7 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
.+.++.++.+++.+|..+. ++|++|+|++|......|..+.++++|++|+|++|......|..+.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777778888887654 68888888886554445667888888888888887655555677888888888888888
Q ss_pred cCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCc-ccCCCCcccEEEccCCcCcCCCc
Q 048786 87 SIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPD-TLGKVESLEELDVSGTAIRRPTS 164 (862)
Q Consensus 87 ~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~ 164 (862)
.+..+|.. ++.+++|++|++++|......+..+.++++|++|++++|+.++.++. .+..+++|+.|++++|.+..+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 88887765 77888888888888775433444677888888888888777776665 4777888888888888887765
Q ss_pred hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCcccCCCCcc
Q 048786 165 SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSL 243 (862)
Q Consensus 165 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 243 (862)
.+..+++|+.|++++|.... ..|. +..+++|+.|++++|.+.. ..+..+..+++|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 268 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPE-----------------------IRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASL 268 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSE-----------------------ECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTC
T ss_pred cccccccccEEECcCCcCcc-----------------------cCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCC
Confidence 35667777777777765432 1122 5666777777777777753 335566777777
Q ss_pred cEEECcCCCCccccc-cccCCCCCCEEeeecCC
Q 048786 244 KELYLNRNNFVTLPA-SISGLLNLEELELEDCK 275 (862)
Q Consensus 244 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 275 (862)
+.|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 777777777776664 34567777777777664
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.8e-20 Score=202.81 Aligned_cols=241 Identities=22% Similarity=0.225 Sum_probs=170.3
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccc-cCCCCCCCEEEeeCCCCCC--ccchhhcCCCCCcEEEcc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVT-ISSLKCLRTLELSGCSKLK--KFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~ 84 (862)
+.++.++++++++|..+. ++|++|++++|. ++.+|.. +.++++|++|++++|.... ..|..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 578888899999997654 789999999965 5677765 6889999999999975432 236777889999999999
Q ss_pred CccCcccCccCCCCCCCCEEEccCCCCccccc-ccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC--
Q 048786 85 GTSIAEVPSSIELLPGLELLYLNECKNLVRLP-SSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR-- 161 (862)
Q Consensus 85 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~-- 161 (862)
+|.+..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......+..++.+++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99999999889999999999999876433322 467888899999998887666667778888888888888887764
Q ss_pred CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCcccccc-CcCCCCCccEEEccCCCCCCCCCCcccCCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLP-SLTGVCSLTKLDLSDCGLGEAAIPSDIDNL 240 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 240 (862)
.|..+..+++|+.|++++|.... ..| .+..+++|++|++++|.+.+ ..+..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 222 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQ-----------------------LSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 222 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTC
T ss_pred chhHHhhCcCCCEEECCCCCcCC-----------------------cCHHHhcCCCCCCEEECCCCccCc-cChhhccCc
Confidence 56666667777777776665321 111 14455666666666666543 122345556
Q ss_pred CcccEEECcCCCCccc-cccccCCC-CCCEEeeecCC
Q 048786 241 HSLKELYLNRNNFVTL-PASISGLL-NLEELELEDCK 275 (862)
Q Consensus 241 ~~L~~L~L~~n~l~~l-p~~l~~l~-~L~~L~L~~c~ 275 (862)
++|+.|++++|.+... |..+..++ +|++|++++|+
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6666666666666533 33444442 55555555543
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.9e-20 Score=222.02 Aligned_cols=280 Identities=18% Similarity=0.150 Sum_probs=222.5
Q ss_pred CCCCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchh-hcCCCCCc
Q 048786 2 ASMKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQI-VASMEDLS 79 (862)
Q Consensus 2 ~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~ 79 (862)
+++++|++|+|++|.++.++. .++.+++|++|+|++|......|..++.+++|++|+|++|. +..+|.. ++++++|+
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCC
Confidence 357899999999999998865 89999999999999977555555567999999999999975 4556554 69999999
Q ss_pred EEEccCccCcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCc
Q 048786 80 KLYLDGTSIAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTA 158 (862)
Q Consensus 80 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 158 (862)
+|++++|.+..++. .++.+++|++|++++|.. ..++ ++.+++|+.|++++|... .+....+|+.|++++|.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n~l~-----~l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 222 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSSCCS-----EEECCTTCSEEECCSSC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccCccc-----cccCCchhheeeccCCc
Confidence 99999999998765 589999999999999864 3343 566888999999886432 23445678888888887
Q ss_pred CcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCccc
Q 048786 159 IRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDI 237 (862)
Q Consensus 159 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l 237 (862)
+..++..+ .++|+.|++++|..... ........+..+....+......|. +..+++|+.|++++|.++. +|..+
T Consensus 223 l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~ 297 (597)
T 3oja_B 223 INVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYG 297 (597)
T ss_dssp CCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSS
T ss_pred cccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCccc
Confidence 77665443 35788888888776543 2223334456666666666666565 8899999999999999975 78888
Q ss_pred CCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCC-CCCCCCcEEeccCCC
Q 048786 238 DNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLP-QIPPNLQFVRANGCS 296 (862)
Q Consensus 238 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp-~lp~sL~~L~i~~C~ 296 (862)
..+++|+.|+|++|.+..+|..+..+++|+.|++++|+ +..+| ...++|+.|++.+++
T Consensus 298 ~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence 88999999999999999999999999999999999987 45554 356789999988875
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=5.1e-20 Score=201.82 Aligned_cols=253 Identities=19% Similarity=0.239 Sum_probs=193.5
Q ss_pred CCCcccCccccCC------CCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccC
Q 048786 15 TSITEVPSSIELL------TGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSI 88 (862)
Q Consensus 15 ~~i~~lp~~i~~L------~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i 88 (862)
..++++|..+... .++++++++++ .++.+|..+. ++|++|++++|......|..++++++|++|++++|.+
T Consensus 14 ~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 90 (332)
T 2ft3_A 14 PDLDSLPPTYSAMCPFGCHCHLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90 (332)
T ss_dssp -----------CCCCSSCEEETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CccccCCCcccCCCCCCCcccCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc
Confidence 4455677554332 37999999984 5778887664 7999999999765555567899999999999999999
Q ss_pred ccc-CccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC---CCc
Q 048786 89 AEV-PSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR---PTS 164 (862)
Q Consensus 89 ~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~---~~~ 164 (862)
..+ |..++.+++|++|++++|. +..+|..+. ++|++|++++|......+..++.+++|+.|++++|.++. .+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 91 SKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred CccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 987 6679999999999999976 557777665 899999999977655555568999999999999998863 355
Q ss_pred hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCccc
Q 048786 165 SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLK 244 (862)
Q Consensus 165 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 244 (862)
.+..+ +|+.|++++|.... +|. ...++|++|++++|.+.. ..+..+..+++|+
T Consensus 168 ~~~~l-~L~~L~l~~n~l~~------------------------l~~-~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLTG------------------------IPK-DLPETLNELHLDHNKIQA-IELEDLLRYSKLY 220 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCSS------------------------CCS-SSCSSCSCCBCCSSCCCC-CCTTSSTTCTTCS
T ss_pred cccCC-ccCEEECcCCCCCc------------------------cCc-cccCCCCEEECCCCcCCc-cCHHHhcCCCCCC
Confidence 55556 89999998876432 222 112689999999999874 3457789999999
Q ss_pred EEECcCCCCccccc-cccCCCCCCEEeeecCCCCCcCCCC---CCCCcEEeccCCCCceeec
Q 048786 245 ELYLNRNNFVTLPA-SISGLLNLEELELEDCKRLQSLPQI---PPNLQFVRANGCSSLVTLF 302 (862)
Q Consensus 245 ~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~ 302 (862)
.|++++|.+..++. .+..+++|++|++++|. ++.+|.. .++|+.|++.++. ++.++
T Consensus 221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN-ITKVG 280 (332)
T ss_dssp CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC-CCBCC
T ss_pred EEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC-CCccC
Confidence 99999999998765 78999999999999985 7788863 4789999999874 66665
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=7.3e-22 Score=214.55 Aligned_cols=243 Identities=23% Similarity=0.236 Sum_probs=181.8
Q ss_pred CCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCC-CCccccccC-------CCCCCCEEEeeCCCCCCccchhh--c
Q 048786 4 MKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKN-LSSLPVTIS-------SLKCLRTLELSGCSKLKKFPQIV--A 73 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~-l~~lp~~l~-------~l~~L~~L~L~~c~~l~~lp~~i--~ 73 (862)
.++|++|+++++.+ .+|..+... |++|++++|.. ...+|..+. ++++|++|++++|.....+|..+ +
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 45677777778777 778766654 77777777543 123555444 68889999999887666777766 8
Q ss_pred CCCCCcEEEccCccCcccCccCCCC-----CCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCC--CCccc--C
Q 048786 74 SMEDLSKLYLDGTSIAEVPSSIELL-----PGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLEN--VPDTL--G 144 (862)
Q Consensus 74 ~l~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~--lp~~l--~ 144 (862)
.+++|++|++++|.+..+|..++.+ ++|++|++++|......|..++.+++|++|++++|...+. ++..+ +
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 8889999999999888877766665 8899999988876655567888889999999988775543 33344 7
Q ss_pred CCCcccEEEccCCcCcCCCc----hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccE
Q 048786 145 KVESLEELDVSGTAIRRPTS----SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTK 220 (862)
Q Consensus 145 ~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~ 220 (862)
.+++|++|++++|.++.++. .+..+++|+.|++++|...... ..+.+..+++|++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------------~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---------------------GAPSCDWPSQLNS 257 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---------------------CCSCCCCCTTCCE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---------------------chhhhhhcCCCCE
Confidence 88889999999988875432 2345688999999888754321 0122455688999
Q ss_pred EEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCC
Q 048786 221 LDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 221 L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 275 (862)
|++++|.++ .+|..+. ++|++|++++|+++.+|. +..+++|++|++++++
T Consensus 258 L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 258 LNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred EECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 999999886 4777766 889999999999988876 8888999999998875
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=203.92 Aligned_cols=252 Identities=16% Similarity=0.194 Sum_probs=209.8
Q ss_pred CCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccch-hhcCCCCCcEEE
Q 048786 5 KDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQ-IVASMEDLSKLY 82 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~ 82 (862)
++|++|++++|+++.+|. .++.+++|++|++++|......|..+.++++|++|++++|.. +.+|. .++++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEE
Confidence 589999999999999886 799999999999999765444466799999999999999754 45555 489999999999
Q ss_pred ccCccCcccCc--cCCCCCCCCEEEccCCCCcccc-cccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcC
Q 048786 83 LDGTSIAEVPS--SIELLPGLELLYLNECKNLVRL-PSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAI 159 (862)
Q Consensus 83 L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 159 (862)
+++|.+..+|. .++.+++|++|++++|..+..+ +..++++++|++|++++|......|..++.+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999999987 6899999999999999666665 56789999999999999887777788999999999999999999
Q ss_pred cCCCchh-hccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCC---CCCc
Q 048786 160 RRPTSSI-FLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEA---AIPS 235 (862)
Q Consensus 160 ~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~---~lp~ 235 (862)
..++..+ ..+++|+.|++++|....... ..++.....+.++.+++.++.+.+. .+|.
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHF-------------------SELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCC-------------------C------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred ccchhhhhhhcccccEEECCCCccccccc-------------------cccccccccchhhccccccccccCcchhhhHH
Confidence 8877655 458999999999987543211 1122234566788999999887642 3577
Q ss_pred ccCCCCcccEEECcCCCCccccccc-cCCCCCCEEeeecCCC
Q 048786 236 DIDNLHSLKELYLNRNNFVTLPASI-SGLLNLEELELEDCKR 276 (862)
Q Consensus 236 ~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~c~~ 276 (862)
++..+++|++|++++|+++.+|..+ +.+++|++|++++|+.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 7889999999999999999999885 8999999999999973
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=5.9e-20 Score=198.81 Aligned_cols=225 Identities=22% Similarity=0.257 Sum_probs=192.4
Q ss_pred CCCcEEEeecCCCcccCcc-ccCCCCCcEEEEeCCCCCCcc---ccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcE
Q 048786 5 KDLSDLYLDGTSITEVPSS-IELLTGLELLTLKGCKNLSSL---PVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSK 80 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~Ls~c~~l~~l---p~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 80 (862)
++|++|++++++++.+|.. ++.+++|++|++++|. ++.+ |..+..+++|++|++++| .+..+|..+.++++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 5899999999999999875 6899999999999965 4433 566777999999999997 45678888999999999
Q ss_pred EEccCccCcccCc--cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCC-CCCcccCCCCcccEEEccCC
Q 048786 81 LYLDGTSIAEVPS--SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLE-NVPDTLGKVESLEELDVSGT 157 (862)
Q Consensus 81 L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~ 157 (862)
|++++|.+..++. .+..+++|++|++++|......+..+..+++|++|++++|...+ .+|..++.+++|+.|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999998875 68999999999999998777778889999999999999987655 57888999999999999999
Q ss_pred cCcCC-CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcc
Q 048786 158 AIRRP-TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSD 236 (862)
Q Consensus 158 ~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~ 236 (862)
.++.. +..+..+++|+.|++++|...... ...+..+++|+.|++++|.+. ...|..
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~ 242 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----------------------TFPYKCLNSLQVLDYSLNHIM-TSKKQE 242 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCC----------------------SGGGTTCTTCCEEECTTSCCC-BCSSSS
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccC----------------------hhhccCcccCCEeECCCCCCc-ccCHHH
Confidence 99977 677889999999999998754211 012667899999999999987 445777
Q ss_pred cCCCC-cccEEECcCCCCc
Q 048786 237 IDNLH-SLKELYLNRNNFV 254 (862)
Q Consensus 237 l~~l~-~L~~L~L~~n~l~ 254 (862)
+..++ +|++|+|++|.+.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 88874 9999999999886
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=2.5e-19 Score=191.78 Aligned_cols=219 Identities=22% Similarity=0.298 Sum_probs=120.9
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCcc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTS 87 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~ 87 (862)
++++.++++++.+|..+ .++|++|++++|......+..+..+++|++|++++|......|..++++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45555556666665433 3455666665543222222335555555555555543333334445555555555555543
Q ss_pred -CcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch-
Q 048786 88 -IAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS- 165 (862)
Q Consensus 88 -i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~- 165 (862)
+..++ |..+..+++|++|++++|......+..++.+++|++|++++|.+..++..
T Consensus 92 ~l~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 92 QLRSVD-----------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp TCCCCC-----------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccccC-----------------------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 44431 33444455555555555444333344455555555555555555544432
Q ss_pred hhccCCccEEEccCCCCCCCccccccccccccccCCCCCcccccc-CcCCCCCccEEEccCCCCCCCCCCcccCCCCccc
Q 048786 166 IFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLP-SLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLK 244 (862)
Q Consensus 166 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 244 (862)
+..+++|+.|++++|.... ..+ .+..+++|++|++++|.+.+ ..|..+..+++|+
T Consensus 149 ~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISS-----------------------VPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLM 204 (285)
T ss_dssp TTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCC
T ss_pred hccCCCccEEECCCCcccc-----------------------cCHHHhcCccccCEEECCCCcccc-cCHhHccCccccc
Confidence 4455555555555554221 011 14556777777777777753 3467777888888
Q ss_pred EEECcCCCCccccc-cccCCCCCCEEeeecCC
Q 048786 245 ELYLNRNNFVTLPA-SISGLLNLEELELEDCK 275 (862)
Q Consensus 245 ~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 275 (862)
.|++++|.+..+|. .+..+++|+.|++++|+
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 88888888887764 47778888888888775
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=2.5e-18 Score=202.73 Aligned_cols=237 Identities=27% Similarity=0.327 Sum_probs=181.2
Q ss_pred CCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC
Q 048786 6 DLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG 85 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 85 (862)
++++|++++++++.+|..+. ++|++|++++| .++.+|. .+++|++|+|++|. ++.+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 58999999999999998776 89999999996 4678887 47999999999975 667777 789999999999
Q ss_pred ccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch
Q 048786 86 TSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS 165 (862)
Q Consensus 86 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 165 (862)
|.+..+|. .+++|+.|++++|+ +..+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.++.+|
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCCCc--
Confidence 99999988 67899999999986 5667764 5899999999975 445554 3578999999999999988
Q ss_pred hhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccE
Q 048786 166 IFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKE 245 (862)
Q Consensus 166 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 245 (862)
..+++|+.|++++|..... |. .+++|+.|++++|.+.. +|. .+++|+.
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l------------------------~~--~~~~L~~L~L~~N~l~~--l~~---~~~~L~~ 225 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASL------------------------PT--LPSELYKLWAYNNRLTS--LPA---LPSGLKE 225 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCC------------------------CC--CCTTCCEEECCSSCCSS--CCC---CCTTCCE
T ss_pred -ccCCCCcEEECCCCCCCCC------------------------CC--ccchhhEEECcCCcccc--cCC---CCCCCCE
Confidence 4578999999999875431 11 13567777777776643 443 2366777
Q ss_pred EECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCCCCCCcEEeccCCCCceeec
Q 048786 246 LYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQIPPNLQFVRANGCSSLVTLF 302 (862)
Q Consensus 246 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~ 302 (862)
|++++|.++.+| ..+++|+.|++++| .++.+|..+++|+.|++.+| .++.+|
T Consensus 226 L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 226 LIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCC
T ss_pred EEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCC
Confidence 777777776666 34566777777776 46666666667777777666 455555
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=3.8e-21 Score=209.35 Aligned_cols=258 Identities=16% Similarity=0.096 Sum_probs=191.1
Q ss_pred EEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCcc
Q 048786 9 DLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTS 87 (862)
Q Consensus 9 ~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~ 87 (862)
.++++.+.+.+++. .+..+++|++|++++|......|..+..+++|++|++++|.... .+. ++++++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEECcCCc
Confidence 33444444443333 34557789999999976555555678889999999999975443 333 8889999999999998
Q ss_pred CcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCC-chh
Q 048786 88 IAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPT-SSI 166 (862)
Q Consensus 88 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~-~~l 166 (862)
+..++. .++|++|++++|.... ++. ..+++|++|++++|......+..++.+++|+.|++++|.+...+ ..+
T Consensus 92 l~~l~~----~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 VQELLV----GPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEEE----CTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccccC----CCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 887764 3889999999887543 332 24678999999998776666667888899999999999888653 334
Q ss_pred -hccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccE
Q 048786 167 -FLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKE 245 (862)
Q Consensus 167 -~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 245 (862)
..+++|+.|++++|.... ++....+++|++|++++|.+.. +|..+..+++|+.
T Consensus 165 ~~~l~~L~~L~L~~N~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~ 218 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYD------------------------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTW 218 (317)
T ss_dssp GGGTTTCCEEECTTSCCCE------------------------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSE
T ss_pred hhccCcCCEEECCCCcCcc------------------------cccccccccCCEEECCCCcCCc--chhhhcccCcccE
Confidence 468899999999887432 2334457889999999998864 6677888899999
Q ss_pred EECcCCCCccccccccCCCCCCEEeeecCCCC-CcCCCC---CCCCcEEeccCCCCceee
Q 048786 246 LYLNRNNFVTLPASISGLLNLEELELEDCKRL-QSLPQI---PPNLQFVRANGCSSLVTL 301 (862)
Q Consensus 246 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L-~~lp~l---p~sL~~L~i~~C~~L~~l 301 (862)
|++++|.++.+|..+..+++|+.|++++|+.. ..+|.. .+.|+.|++.+++.++..
T Consensus 219 L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred EECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999999999988888999999999998754 344432 355666777666555543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=4.2e-19 Score=203.17 Aligned_cols=225 Identities=26% Similarity=0.308 Sum_probs=189.3
Q ss_pred CCCcEEEeecCCCccc-CccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEV-PSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+++++|+|++|+++.+ |..++++++|++|+|++|......|..+.++++|++|+|++|......+..++++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5799999999999977 568999999999999997655555577999999999999997644444456899999999999
Q ss_pred cCccCcccCc-cCCCCCCCCEEEccCCCCcccccc-cccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 84 DGTSIAEVPS-SIELLPGLELLYLNECKNLVRLPS-SINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 84 ~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
++|.+..+|. .+..+++|+.|++++|..+..++. .+..+++|++|++++|.. ..+| .+..+++|+.|++++|.+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccc-cccccccccEEECcCCcCcc
Confidence 9999999886 588999999999999888888776 588999999999999754 4555 58899999999999999997
Q ss_pred C-CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCC
Q 048786 162 P-TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNL 240 (862)
Q Consensus 162 ~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 240 (862)
+ +..+..+++|+.|++++|..... ....+..+++|+.|+|++|.++. ..+..+..+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 289 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLI----------------------ERNAFDGLASLVELNLAHNNLSS-LPHDLFTPL 289 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEE----------------------CTTTTTTCTTCCEEECCSSCCSC-CCTTSSTTC
T ss_pred cCcccccCccCCCEEEeCCCcCceE----------------------CHHHhcCCCCCCEEECCCCcCCc-cChHHhccc
Confidence 6 67788999999999999875421 11126788999999999999973 334567889
Q ss_pred CcccEEECcCCCCc
Q 048786 241 HSLKELYLNRNNFV 254 (862)
Q Consensus 241 ~~L~~L~L~~n~l~ 254 (862)
++|+.|+|++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 99999999999765
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=5.1e-19 Score=201.74 Aligned_cols=225 Identities=25% Similarity=0.318 Sum_probs=189.1
Q ss_pred CCCcEEEeecCCCcccC-ccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEVP-SSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+++++|+|++|+++.++ ..++++++|++|+|++|......+..+.++++|++|+|++|......+..+.++++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57999999999999876 68999999999999997654444567899999999999997544334457999999999999
Q ss_pred cCccCcccCc-cCCCCCCCCEEEccCCCCcccccc-cccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 84 DGTSIAEVPS-SIELLPGLELLYLNECKNLVRLPS-SINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 84 ~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
++|.+..+|. .+..+++|++|++++|..+..++. .+.++++|++|++++|. +..+| .+..+++|+.|++++|.++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEECCCCccCc
Confidence 9999998876 588999999999999888888776 58899999999999975 45666 48899999999999999987
Q ss_pred C-CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCC
Q 048786 162 P-TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNL 240 (862)
Q Consensus 162 ~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 240 (862)
+ +..+..+++|+.|++.+|..... ....+..+++|+.|+|++|.++. ..+..+..+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 278 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVI----------------------ERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPL 278 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEE----------------------CTTSSTTCTTCCEEECTTSCCCC-CCTTTTSSC
T ss_pred cChhhhccCccCCEEECCCCceeEE----------------------ChhhhcCCCCCCEEECCCCCCCc-cChhHhccc
Confidence 6 67888999999999999875421 11127788999999999999974 334567889
Q ss_pred CcccEEECcCCCCc
Q 048786 241 HSLKELYLNRNNFV 254 (862)
Q Consensus 241 ~~L~~L~L~~n~l~ 254 (862)
++|+.|+|++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999999765
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1.4e-19 Score=193.80 Aligned_cols=178 Identities=22% Similarity=0.283 Sum_probs=139.1
Q ss_pred CCCCcEEEeecCCCcccC-ccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCcc-chhhcCCCCCcEE
Q 048786 4 MKDLSDLYLDGTSITEVP-SSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKF-PQIVASMEDLSKL 81 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L 81 (862)
.++|++|+++++.++.++ ..++.+++|++|++++|......|..+..+++|++|++++|..++.+ |..++++++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468999999999999887 46899999999999997654445778999999999999998756655 7889999999999
Q ss_pred EccCccCccc-CccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 82 YLDGTSIAEV-PSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 82 ~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
++++|.+..+ |..++.+++|++|++++|......+..++.+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 9999999877 456888999999999988754444455778888888888886544333345777788888888887776
Q ss_pred CC-CchhhccCCccEEEccCCC
Q 048786 161 RP-TSSIFLMKNLRSLYFSGCN 181 (862)
Q Consensus 161 ~~-~~~l~~l~~L~~L~L~~~~ 181 (862)
.. +..+..+++|+.|++++|.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCcccccEeeCCCCc
Confidence 54 4555555666666665554
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1.8e-19 Score=196.17 Aligned_cols=214 Identities=17% Similarity=0.126 Sum_probs=137.0
Q ss_pred cCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCE
Q 048786 48 ISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKT 127 (862)
Q Consensus 48 l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 127 (862)
+..+++|++|++++|......|..++++++|++|++++|.+..+++ ++.+++|++|++++|. +..++ ..++|++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~ 103 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIET 103 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCE
Confidence 3445677777777765555555677777777777777777776554 7777777777777765 33333 3467777
Q ss_pred EEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc-hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCcc
Q 048786 128 LNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS-SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVA 206 (862)
Q Consensus 128 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 206 (862)
|++++|......+ ..+++|+.|++++|.++.++. .+..+++|+.|++++|......
T Consensus 104 L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------- 160 (317)
T 3o53_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------------------- 160 (317)
T ss_dssp EECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE--------------------
T ss_pred EECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc--------------------
Confidence 7777765433222 235667777777777776543 5666777777777776543210
Q ss_pred ccccCc-CCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCC--
Q 048786 207 LMLPSL-TGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQI-- 283 (862)
Q Consensus 207 ~~lp~l-~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~l-- 283 (862)
...+ ..+++|++|++++|.++. ++. ...+++|++|++++|.+..+|..+..+++|+.|++++|. ++.+|..
T Consensus 161 --~~~~~~~l~~L~~L~L~~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 234 (317)
T 3o53_A 161 --FAELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR 234 (317)
T ss_dssp --GGGGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCC
T ss_pred --HHHHhhccCcCCEEECCCCcCcc--ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhh
Confidence 1112 245677777777777654 332 234677777777777777777777777777777777763 5566642
Q ss_pred -CCCCcEEeccCCC
Q 048786 284 -PPNLQFVRANGCS 296 (862)
Q Consensus 284 -p~sL~~L~i~~C~ 296 (862)
.++|+.|++.+++
T Consensus 235 ~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 235 FSQNLEHFDLRGNG 248 (317)
T ss_dssp CCTTCCEEECTTCC
T ss_pred cCCCCCEEEccCCC
Confidence 3566777766654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=7.7e-19 Score=202.55 Aligned_cols=222 Identities=17% Similarity=0.126 Sum_probs=169.0
Q ss_pred ccCccccCCC----CCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCcc
Q 048786 19 EVPSSIELLT----GLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSS 94 (862)
Q Consensus 19 ~lp~~i~~L~----~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~ 94 (862)
.+|..+..+. +|++|+|++|......|..+..+++|++|+|++|......| ++.+++|++|++++|.+..+|..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC
Confidence 5566555544 89999999876555556678888999999998875444444 88888999999999988877653
Q ss_pred CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC-Cchhh-ccCCc
Q 048786 95 IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP-TSSIF-LMKNL 172 (862)
Q Consensus 95 i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~-~l~~L 172 (862)
++|++|++++|......+. .+++|++|++++|......|..++.+++|+.|++++|.++.. |..+. .+++|
T Consensus 99 ----~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 99 ----PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp ----TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ----CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 7889999988775443332 467888899988877776677788888899999988888864 44554 67888
Q ss_pred cEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCC
Q 048786 173 RSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNN 252 (862)
Q Consensus 173 ~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~ 252 (862)
+.|++++|.... +|....+++|+.|++++|.++. +|..+..+++|+.|+|++|.
T Consensus 172 ~~L~Ls~N~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 172 EHLNLQYNFIYD------------------------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEECTTSCCCE------------------------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC
T ss_pred cEEecCCCcccc------------------------ccccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCc
Confidence 888888877432 2334457888888888888864 66667888888888888888
Q ss_pred CccccccccCCCCCCEEeeecCC
Q 048786 253 FVTLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 253 l~~lp~~l~~l~~L~~L~L~~c~ 275 (862)
+..+|..+..+++|+.|++++|+
T Consensus 226 l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 226 LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCEECTTCCCCTTCCEEECTTCC
T ss_pred CcccchhhccCCCCCEEEcCCCC
Confidence 88888888888888888888876
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.3e-19 Score=208.97 Aligned_cols=237 Identities=21% Similarity=0.206 Sum_probs=200.0
Q ss_pred CCCCCcEEEeecCCCcccC-ccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEE
Q 048786 3 SMKDLSDLYLDGTSITEVP-SSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKL 81 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 81 (862)
.+++|++|+|++|.+..++ ..++.+++|++|+|++|. +...++ +..+++|++|+|++|. ++.+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEE
Confidence 4569999999999999875 689999999999999976 444444 8999999999999974 444443 3899999
Q ss_pred EccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccC-CCCcccEEEccCCcCc
Q 048786 82 YLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLG-KVESLEELDVSGTAIR 160 (862)
Q Consensus 82 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~-~l~~L~~L~l~~~~~~ 160 (862)
++++|.+..++.. .+++|+.|++++|......|..++.+++|++|++++|......|..+. .+++|+.|++++|.++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999999988764 578999999999987777788899999999999999887777777775 7999999999999999
Q ss_pred CCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCC
Q 048786 161 RPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNL 240 (862)
Q Consensus 161 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 240 (862)
.++.. ..+++|+.|++++|.... ..|.+..+++|+.|++++|.++. +|..+..+
T Consensus 183 ~~~~~-~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l 236 (487)
T 3oja_A 183 DVKGQ-VVFAKLKTLDLSSNKLAF-----------------------MGPEFQSAAGVTWISLRNNKLVL--IEKALRFS 236 (487)
T ss_dssp EEECC-CCCTTCCEEECCSSCCCE-----------------------ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCC
T ss_pred ccccc-ccCCCCCEEECCCCCCCC-----------------------CCHhHcCCCCccEEEecCCcCcc--cchhhccC
Confidence 87543 358999999999987542 22336778999999999999974 88899999
Q ss_pred CcccEEECcCCCCc--cccccccCCCCCCEEeeecC
Q 048786 241 HSLKELYLNRNNFV--TLPASISGLLNLEELELEDC 274 (862)
Q Consensus 241 ~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c 274 (862)
++|+.|++++|.+. .+|.++..++.|+.+++..+
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 99999999999998 78888998888888887643
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.6e-17 Score=195.89 Aligned_cols=232 Identities=26% Similarity=0.326 Sum_probs=186.7
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEcc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~ 84 (862)
++|++|++++|+++.+|. .+++|++|+|++|. ++.+|. .+++|++|++++| .++.+|. .+.+|++|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECC
Confidence 689999999999999997 68999999999965 777887 5899999999996 5666776 67899999999
Q ss_pred CccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc
Q 048786 85 GTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS 164 (862)
Q Consensus 85 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 164 (862)
+|.+..+|.. +++|++|++++|. +..+|. .+++|+.|++++|. +..+| ..+++|+.|++++|.++.+|.
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCCCCC
Confidence 9999999875 4899999999985 556665 35789999999965 45566 457899999999999998876
Q ss_pred hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCccc
Q 048786 165 SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLK 244 (862)
Q Consensus 165 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 244 (862)
. +++|+.|++.+|.... +|. .+++|+.|++++|.++. +| ..+++|+
T Consensus 199 ~---~~~L~~L~L~~N~l~~------------------------l~~--~~~~L~~L~Ls~N~L~~--lp---~~l~~L~ 244 (622)
T 3g06_A 199 L---PSELYKLWAYNNRLTS------------------------LPA--LPSGLKELIVSGNRLTS--LP---VLPSELK 244 (622)
T ss_dssp C---CTTCCEEECCSSCCSS------------------------CCC--CCTTCCEEECCSSCCSC--CC---CCCTTCC
T ss_pred c---cchhhEEECcCCcccc------------------------cCC--CCCCCCEEEccCCccCc--CC---CCCCcCc
Confidence 4 4789999999987542 221 23678889999888864 55 4567888
Q ss_pred EEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCC---CCCCcEEeccCCC
Q 048786 245 ELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQI---PPNLQFVRANGCS 296 (862)
Q Consensus 245 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~ 296 (862)
.|+|++|.++.+|. .+++|+.|++++|. ++.+|.. .++|+.|++.+++
T Consensus 245 ~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 245 ELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred EEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 99999988888886 67888889998874 6677652 3677777777765
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=4.3e-20 Score=218.77 Aligned_cols=252 Identities=19% Similarity=0.118 Sum_probs=173.5
Q ss_pred ccccCCCCCcEEEEeCCCCCC---ccccccC------------CCCCCCEEEeeCCCCCCccchhhcCC--CCCcEEEcc
Q 048786 22 SSIELLTGLELLTLKGCKNLS---SLPVTIS------------SLKCLRTLELSGCSKLKKFPQIVASM--EDLSKLYLD 84 (862)
Q Consensus 22 ~~i~~L~~L~~L~Ls~c~~l~---~lp~~l~------------~l~~L~~L~L~~c~~l~~lp~~i~~l--~~L~~L~L~ 84 (862)
..+..+++|++|++++|.... .+|..++ .+++|++|+|++|......+..++.. .+|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 345678888999998875433 2222222 67889999999885444445555553 348999988
Q ss_pred Ccc-Cc--ccCccCCCCCCCCEEEccCCCCccc----ccccccCCCCCCEEEecCCCCC----CCCCcccCCCCcccEEE
Q 048786 85 GTS-IA--EVPSSIELLPGLELLYLNECKNLVR----LPSSINGLKSLKTLNLSGCCKL----ENVPDTLGKVESLEELD 153 (862)
Q Consensus 85 ~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~c~~l----~~lp~~l~~l~~L~~L~ 153 (862)
++. +. .++..+..+++|++|++++|..... ++.....+++|++|++++|... ..++..+..+++|+.|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 775 22 2333345788999999998864322 3334557889999999887654 23444566789999999
Q ss_pred ccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCC
Q 048786 154 VSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAI 233 (862)
Q Consensus 154 l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~l 233 (862)
+++|.+..++..+..+++|+.|+++++...... ......+..+++|+.|+++++.. ..+
T Consensus 227 L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~l~~~~~L~~L~l~~~~~--~~l 285 (592)
T 3ogk_B 227 VGDFEILELVGFFKAAANLEEFCGGSLNEDIGM-------------------PEKYMNLVFPRKLCRLGLSYMGP--NEM 285 (592)
T ss_dssp CSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC-------------------TTSSSCCCCCTTCCEEEETTCCT--TTG
T ss_pred ccCccHHHHHHHHhhhhHHHhhcccccccccch-------------------HHHHHHhhccccccccCccccch--hHH
Confidence 999988888888889999999999864322110 01122366778999999988643 457
Q ss_pred CcccCCCCcccEEECcCCCCc--cccccccCCCCCCEEeeecCCCCCcCCC---CCCCCcEEeccC
Q 048786 234 PSDIDNLHSLKELYLNRNNFV--TLPASISGLLNLEELELEDCKRLQSLPQ---IPPNLQFVRANG 294 (862)
Q Consensus 234 p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~i~~ 294 (862)
|..+..+++|++|+|++|.+. .++..+..+++|+.|++.++..-..++. ..++|+.|++.+
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 888888999999999999865 3344578899999999985432222222 236688887774
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=9.9e-18 Score=179.81 Aligned_cols=200 Identities=24% Similarity=0.267 Sum_probs=117.6
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCE
Q 048786 24 IELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLEL 103 (862)
Q Consensus 24 i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 103 (862)
++++++++.+++++ ..++.+|..+. +++++|++++|......|..+.++++|++|++++|.+..++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 44555555555555 34455554443 4566666666544434445566666666666666666665543 56666666
Q ss_pred EEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCC
Q 048786 104 LYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 104 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 183 (862)
|++++|. +..+|..+..+++|++|++++|......+..++.+++|+.|++++|.++.++...
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------- 143 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL----------------- 143 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT-----------------
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh-----------------
Confidence 7666654 4456666666777777777775544444456777777777777777776554322
Q ss_pred CCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCc-ccCCCCcccEEECcCCCCccccccccC
Q 048786 184 PASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPS-DIDNLHSLKELYLNRNNFVTLPASISG 262 (862)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l~~ 262 (862)
+..+++|+.|++++|+++. +|. .+..+++|+.|+|++|.++.+|..+..
T Consensus 144 ----------------------------~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~ 193 (290)
T 1p9a_G 144 ----------------------------LTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193 (290)
T ss_dssp ----------------------------TTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ----------------------------cccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhcc
Confidence 2233445555555555432 332 334566666666666666666666666
Q ss_pred CCCCCEEeeecCC
Q 048786 263 LLNLEELELEDCK 275 (862)
Q Consensus 263 l~~L~~L~L~~c~ 275 (862)
+++|+.|++++++
T Consensus 194 ~~~L~~l~L~~Np 206 (290)
T 1p9a_G 194 SHLLPFAFLHGNP 206 (290)
T ss_dssp TCCCSEEECCSCC
T ss_pred cccCCeEEeCCCC
Confidence 6666666666664
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1.1e-17 Score=178.04 Aligned_cols=218 Identities=23% Similarity=0.217 Sum_probs=118.1
Q ss_pred EEeecCCCcccCccccCCCCCcEEEEeCCCCCCccc-cccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccC
Q 048786 10 LYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLP-VTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSI 88 (862)
Q Consensus 10 L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i 88 (862)
.+..+.++.++|..+. ++|++|++++|. ++.++ ..+.++++|++|++++|......+..++++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3344455555665443 356666666643 33333 2455566666666666533333333455555555555555555
Q ss_pred cccC-ccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC--CCch
Q 048786 89 AEVP-SSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR--PTSS 165 (862)
Q Consensus 89 ~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~--~~~~ 165 (862)
..++ ..+..+++|++|++++|.. ....+..++.+++|++|++++|.+.. +|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNL------------------------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCC------------------------CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CccChhhhcCCccccEEECCCCCc------------------------cccCchhcccCCCCCEEECcCCccceecCchh
Confidence 5444 3345555555555555443 32222234444555555555555443 3445
Q ss_pred hhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCcc-EEEccCCCCCCCCCCcccCCCCccc
Q 048786 166 IFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLT-KLDLSDCGLGEAAIPSDIDNLHSLK 244 (862)
Q Consensus 166 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~-~L~Ls~~~l~~~~lp~~l~~l~~L~ 244 (862)
+..+++|+.|++++|....... ..+..+..++.|. .|++++|.+.. ++.......+|+
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~-------------------~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~ 203 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYC-------------------TDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLK 203 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECG-------------------GGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEE
T ss_pred hccCCCCCEEECCCCCCCcCCH-------------------HHhhhhhhccccceeeecCCCcccc--cCccccCCCccc
Confidence 5555555555555554321100 0011122333333 78888887753 555555556899
Q ss_pred EEECcCCCCcccccc-ccCCCCCCEEeeecCC
Q 048786 245 ELYLNRNNFVTLPAS-ISGLLNLEELELEDCK 275 (862)
Q Consensus 245 ~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~ 275 (862)
.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 204 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred EEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 999999988888765 4778889999988876
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=1e-18 Score=189.63 Aligned_cols=219 Identities=25% Similarity=0.288 Sum_probs=176.8
Q ss_pred CcEEEeecCCCc--ccCcccc-------CCCCCcEEEEeCCCCCCcccccc--CCCCCCCEEEeeCCCCCCccchhhcCC
Q 048786 7 LSDLYLDGTSIT--EVPSSIE-------LLTGLELLTLKGCKNLSSLPVTI--SSLKCLRTLELSGCSKLKKFPQIVASM 75 (862)
Q Consensus 7 Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~Ls~c~~l~~lp~~l--~~l~~L~~L~L~~c~~l~~lp~~i~~l 75 (862)
|++|+++++.+. .+|..+. .+++|++|++++|.....+|..+ ..+++|++|++++|.... .|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHH
Confidence 677888888775 4666665 79999999999988777888876 889999999999976544 48888777
Q ss_pred -----CCCcEEEccCccCcccC-ccCCCCCCCCEEEccCCCCccc--ccccc--cCCCCCCEEEecCCCCCC--CCC-cc
Q 048786 76 -----EDLSKLYLDGTSIAEVP-SSIELLPGLELLYLNECKNLVR--LPSSI--NGLKSLKTLNLSGCCKLE--NVP-DT 142 (862)
Q Consensus 76 -----~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp~~l--~~l~~L~~L~L~~c~~l~--~lp-~~ 142 (862)
++|++|++++|.+..++ ..++.+++|++|++++|+.... ++..+ +.+++|++|++++|.... .++ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 89999999999999887 6799999999999999986554 34444 889999999999986542 222 23
Q ss_pred cCCCCcccEEEccCCcCcCCC--chhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCcc
Q 048786 143 LGKVESLEELDVSGTAIRRPT--SSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLT 219 (862)
Q Consensus 143 l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~ 219 (862)
+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.... +|. +. ++|+
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------ip~~~~--~~L~ 277 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ------------------------VPKGLP--AKLS 277 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS------------------------CCSSCC--SEEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh------------------------hhhhcc--CCce
Confidence 457899999999999998765 455668999999999987542 222 22 7899
Q ss_pred EEEccCCCCCCCCCCcccCCCCcccEEECcCCCCcc
Q 048786 220 KLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVT 255 (862)
Q Consensus 220 ~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~ 255 (862)
+|++++|++++ +|. +..+++|++|++++|.++.
T Consensus 278 ~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 278 VLDLSYNRLDR--NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECCSSCCCS--CCC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCCCCC--Chh-HhhCCCCCEEeccCCCCCC
Confidence 99999999975 566 8899999999999998864
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=2.8e-17 Score=176.25 Aligned_cols=202 Identities=21% Similarity=0.259 Sum_probs=159.8
Q ss_pred CCCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEE
Q 048786 2 ASMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKL 81 (862)
Q Consensus 2 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 81 (862)
+++++++++++++++++.+|..+. +++++|++++|......|..+..+++|++|++++|. ++.++.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEE
Confidence 467889999999999999887664 688999999876555556678889999999999864 5555554 788899999
Q ss_pred EccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 82 YLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 82 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
++++|.+..+|..+..+++|++|++++|+.....+..+..+++|++|++++|......+..+..+++|+.|++++|.++.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 99999999999888899999999999887554445678889999999999876655545557788888988888887776
Q ss_pred CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLH 241 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 241 (862)
+|..+ +..+++|+.|++++|.+. .+|..+...+
T Consensus 163 l~~~~---------------------------------------------~~~l~~L~~L~L~~N~l~--~ip~~~~~~~ 195 (290)
T 1p9a_G 163 LPAGL---------------------------------------------LNGLENLDTLLLQENSLY--TIPKGFFGSH 195 (290)
T ss_dssp CCTTT---------------------------------------------TTTCTTCCEEECCSSCCC--CCCTTTTTTC
T ss_pred cCHHH---------------------------------------------hcCcCCCCEEECCCCcCC--ccChhhcccc
Confidence 54421 345677888888888886 4788888888
Q ss_pred cccEEECcCCCCc
Q 048786 242 SLKELYLNRNNFV 254 (862)
Q Consensus 242 ~L~~L~L~~n~l~ 254 (862)
+|+.|+|.+|.+.
T Consensus 196 ~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 196 LLPFAFLHGNPWL 208 (290)
T ss_dssp CCSEEECCSCCBC
T ss_pred cCCeEEeCCCCcc
Confidence 9999999988765
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.1e-16 Score=169.83 Aligned_cols=147 Identities=17% Similarity=0.225 Sum_probs=75.9
Q ss_pred CcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCcc-CCCCCCCCEEEccC
Q 048786 30 LELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLNE 108 (862)
Q Consensus 30 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 108 (862)
.+++++++ ..++.+|..+. ++|++|++++|......+..++++++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 18 ~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccC-CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 44455444 23444444332 3455555555432222223455555555555555555555544 34556666666665
Q ss_pred CCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch-hhccCCccEEEccC
Q 048786 109 CKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS-IFLMKNLRSLYFSG 179 (862)
Q Consensus 109 ~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~ 179 (862)
|......+..+..+++|++|++++|......+..++.+++|+.|++++|.+..++.. +..+++|+.|++++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 543332233455666666666666554444445566777777777777766655432 33334444444433
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=4.2e-20 Score=218.91 Aligned_cols=255 Identities=17% Similarity=0.161 Sum_probs=130.9
Q ss_pred cccCCCCCcEEEEeCCCCCCccc---------------cccCCCCCCCEEEeeCCCCCCccchhhc-CCCCCcEEEccCc
Q 048786 23 SIELLTGLELLTLKGCKNLSSLP---------------VTISSLKCLRTLELSGCSKLKKFPQIVA-SMEDLSKLYLDGT 86 (862)
Q Consensus 23 ~i~~L~~L~~L~Ls~c~~l~~lp---------------~~l~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~L~~~ 86 (862)
.+..+++|++|++++|..+..+. .....+++|++|+|++|......+..+. .+++|++|+++++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 44556666666666654332211 1112455666666666654333344443 4666666666665
Q ss_pred -cCcc--cCccCCCCCCCCEEEccCCCCccc----ccccccCCCCCCEEEecCCC-CC--CCCCcccCCCCcccEEEccC
Q 048786 87 -SIAE--VPSSIELLPGLELLYLNECKNLVR----LPSSINGLKSLKTLNLSGCC-KL--ENVPDTLGKVESLEELDVSG 156 (862)
Q Consensus 87 -~i~~--lp~~i~~L~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~c~-~l--~~lp~~l~~l~~L~~L~l~~ 156 (862)
.+.. ++..+..+++|++|++++|..... ++.....+++|++|++++|. .. ..++..+..+++|+.|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 3332 333344566666666666652211 22223355667777776654 11 01111123456777777776
Q ss_pred C-cCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEE-EccCCCCCCCCCC
Q 048786 157 T-AIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKL-DLSDCGLGEAAIP 234 (862)
Q Consensus 157 ~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L-~Ls~~~l~~~~lp 234 (862)
| .+..++..+..+++|+.|++..+....... ......+.+..+++|+.| .+.+.. ...++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~----------------~~~~l~~~l~~~~~L~~Ls~~~~~~--~~~l~ 282 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPD----------------VYSGLSVALSGCKELRCLSGFWDAV--PAYLP 282 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHH----------------HHHHHHHHHHTCTTCCEEECCBTCC--GGGGG
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchh----------------hHHHHHHHHhcCCCcccccCCcccc--hhhHH
Confidence 6 333455566667777777766554211000 000111125566667766 333322 23345
Q ss_pred cccCCCCcccEEECcCCCCc--cccccccCCCCCCEEeeecCCCCCcCC---CCCCCCcEEeccCC
Q 048786 235 SDIDNLHSLKELYLNRNNFV--TLPASISGLLNLEELELEDCKRLQSLP---QIPPNLQFVRANGC 295 (862)
Q Consensus 235 ~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~L~~lp---~lp~sL~~L~i~~C 295 (862)
..+..+++|++|+|++|.+. .++..+..+++|++|++.+|..-..++ ...++|+.|++.+|
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECS
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecC
Confidence 44456677777777777755 233345677777777777762111111 12356677766555
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.2e-17 Score=175.68 Aligned_cols=202 Identities=21% Similarity=0.171 Sum_probs=166.9
Q ss_pred CCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
++|++|++++|+++.++. .++.+++|++|++++|......+..+..+++|++|++++|......|..++++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 369999999999998876 7899999999999997544444457899999999999998766666688999999999999
Q ss_pred cCccCcccCc-cCCCCCCCCEEEccCCCCcc-cccccccCCCCCCEEEecCCCCCCCCCcccCCCCccc----EEEccCC
Q 048786 84 DGTSIAEVPS-SIELLPGLELLYLNECKNLV-RLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLE----ELDVSGT 157 (862)
Q Consensus 84 ~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~----~L~l~~~ 157 (862)
++|.+..++. .++.+++|++|++++|.... .+|..++.+++|++|++++|......+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9999998876 68999999999999987654 3688999999999999999876655556666666666 8999999
Q ss_pred cCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCC
Q 048786 158 AIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLG 229 (862)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~ 229 (862)
.+..++.......+|+.|++++|..... .+. +..+++|+.|++++|.+.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~-----------------------~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSV-----------------------PDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCC-----------------------CTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccCCCcccEEECCCCceeec-----------------------CHhHhcccccccEEEccCCccc
Confidence 9998887777777999999999875421 111 567788888888888764
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=1.5e-16 Score=168.71 Aligned_cols=195 Identities=24% Similarity=0.315 Sum_probs=111.0
Q ss_pred CCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCc-cCCCCCCCCEEEccCCCCcccccc-cccCCCCCCEEEe
Q 048786 53 CLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPS-SIELLPGLELLYLNECKNLVRLPS-SINGLKSLKTLNL 130 (862)
Q Consensus 53 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L 130 (862)
+.+++++++ ..++.+|..+. .+|++|+++++.+..++. .++.+++|++|++++|.. ..+|. .+..+++|++|++
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccC-CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEEC
Confidence 456666666 34555565443 456666666666666654 466666666666666553 33333 3456666666666
Q ss_pred cCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc-hhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccc
Q 048786 131 SGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS-SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALML 209 (862)
Q Consensus 131 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 209 (862)
++|......+..+..+++|+.|++++|.++.++. .+..+++|++|++++|..... .
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------------~ 149 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-----------------------P 149 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------------------C
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-----------------------C
Confidence 6655443333445666666666666666665543 345566666666666543211 0
Q ss_pred cC-cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCcccccc-ccCCCCCCEEeeecCC
Q 048786 210 PS-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPAS-ISGLLNLEELELEDCK 275 (862)
Q Consensus 210 p~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~ 275 (862)
+. +..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 11 4455566666666665542 1223355566666666666666666543 5556666666666654
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=3.2e-17 Score=174.17 Aligned_cols=218 Identities=19% Similarity=0.209 Sum_probs=143.3
Q ss_pred eecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCccc
Q 048786 12 LDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEV 91 (862)
Q Consensus 12 L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~l 91 (862)
+.++.+..+. ....+++|+.|++++|. ++.++. +..+++|++|++++|. +..+ ..++++++|++|++++|.+..+
T Consensus 26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 26 LKKKSVTDAV-TQNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNK-LHDI-SALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HTCSCTTSEE-CHHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSC-CCCC-GGGTTCTTCCEEECTTSCCCCC
T ss_pred hcCccccccc-ccccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCC-CCCc-hhhcCCCCCCEEECCCCccCcc
Confidence 3344444332 34567777777777643 445543 6667777777777754 3333 3667777777777777777766
Q ss_pred Ccc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch-hhcc
Q 048786 92 PSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS-IFLM 169 (862)
Q Consensus 92 p~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l 169 (862)
+.. ++.+++|++|++++|......+..++.+++|++|++++|......+..++.+++|+.|++++|.++.++.. +..+
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 654 57777777777777765444444567777777777777654444444567777788888888777766544 4667
Q ss_pred CCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEEC
Q 048786 170 KNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYL 248 (862)
Q Consensus 170 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L 248 (862)
++|+.|++++|..... .+. +..+++|+.|++++|.+. +.+++|+.|++
T Consensus 181 ~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~ 229 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSV-----------------------PDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSE 229 (272)
T ss_dssp TTCCEEECCSSCCSCC-----------------------CTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHH
T ss_pred ccCCEEECCCCcCCcc-----------------------CHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHH
Confidence 7888888877764321 111 566778888888888654 34567888888
Q ss_pred cCCCCc-cccccccCCCC
Q 048786 249 NRNNFV-TLPASISGLLN 265 (862)
Q Consensus 249 ~~n~l~-~lp~~l~~l~~ 265 (862)
..|.+. .+|.+++.++.
T Consensus 230 ~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 230 WINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCCcccCcccccCC
Confidence 888776 67777776554
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=7.2e-17 Score=167.89 Aligned_cols=206 Identities=16% Similarity=0.247 Sum_probs=112.9
Q ss_pred CCcccCccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCccch-hhcCCCCCcEEEccC-ccCcccC
Q 048786 16 SITEVPSSIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKFPQ-IVASMEDLSKLYLDG-TSIAEVP 92 (862)
Q Consensus 16 ~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~-~~i~~lp 92 (862)
+++++|. +. .+|++|++++|. ++.+|. .+..+++|++|++++|..++.+|. .++++++|++|++++ |.+..+|
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3555665 32 366666666643 344433 455666666666666543444443 556666666666665 6666555
Q ss_pred c-cCCCCCCCCEEEccCCCCcccccccccCCCCCC---EEEecCCCCCCCCCc-ccCCCCccc-EEEccCCcCcCCCchh
Q 048786 93 S-SIELLPGLELLYLNECKNLVRLPSSINGLKSLK---TLNLSGCCKLENVPD-TLGKVESLE-ELDVSGTAIRRPTSSI 166 (862)
Q Consensus 93 ~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~---~L~L~~c~~l~~lp~-~l~~l~~L~-~L~l~~~~~~~~~~~l 166 (862)
. .++.+++|++|++++|. +..+|. +..+++|+ +|++++|..+..++. .++.+++|+ .|++++|.++.+|...
T Consensus 98 ~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp TTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 3 34555666666665554 233444 44555554 555555423333322 244445555 5555444444333221
Q ss_pred hccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCC-CCCCCCCcccCCC-Cccc
Q 048786 167 FLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCG-LGEAAIPSDIDNL-HSLK 244 (862)
Q Consensus 167 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~-l~~~~lp~~l~~l-~~L~ 244 (862)
+.. ++|++|++++|. +.. ..+..+..+ ++|+
T Consensus 176 ---------------------------------------------~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 176 ---------------------------------------------FNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPS 208 (239)
T ss_dssp ---------------------------------------------TTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCS
T ss_pred ---------------------------------------------cCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCc
Confidence 122 466777777773 542 123456667 7888
Q ss_pred EEECcCCCCccccccccCCCCCCEEeeecCCC
Q 048786 245 ELYLNRNNFVTLPASISGLLNLEELELEDCKR 276 (862)
Q Consensus 245 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 276 (862)
.|++++|+++.+|.. .+++|+.|+++++..
T Consensus 209 ~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 209 LLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred EEECCCCccccCChh--HhccCceeeccCccC
Confidence 888888888877765 677777777777643
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=7.5e-17 Score=174.56 Aligned_cols=148 Identities=20% Similarity=0.317 Sum_probs=102.9
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCE
Q 048786 24 IELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLEL 103 (862)
Q Consensus 24 i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 103 (862)
...+++|++|++++| .++.+| .+..+++|++|++++| .+..++. ++++++|++|++++|.+..++ .++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 455777888888775 455566 3777788888888876 4445555 777888888888888877765 5777888888
Q ss_pred EEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCC
Q 048786 104 LYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCN 181 (862)
Q Consensus 104 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 181 (862)
|++++|. +..++. +..+++|++|++++|... .++. ++.+++|+.|++++|.+..++. +..+++|+.|++++|.
T Consensus 112 L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred EECCCCC-CCCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 8888876 444554 778888888888886543 3333 7788888888888887776554 4555555555555543
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.9e-16 Score=164.70 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=139.0
Q ss_pred CCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCccc-hhhcCCCCCcEE
Q 048786 5 KDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKFP-QIVASMEDLSKL 81 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L 81 (862)
++|++|++++|+++.+|. .++.+++|++|++++|..++.+|. .+..+++|++|++++|..++.+| ..++++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 379999999999999986 789999999999999876777775 68899999999999855566665 578999999999
Q ss_pred EccCccCcccCccCCCCCCCC---EEEccCCCCcccccc-cccCCCCCC-EEEecCCCCCCCCCcccCCCCcccEEEccC
Q 048786 82 YLDGTSIAEVPSSIELLPGLE---LLYLNECKNLVRLPS-SINGLKSLK-TLNLSGCCKLENVPDTLGKVESLEELDVSG 156 (862)
Q Consensus 82 ~L~~~~i~~lp~~i~~L~~L~---~L~L~~~~~l~~lp~-~l~~l~~L~-~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 156 (862)
++++|.+..+|. ++.+++|+ +|++++|..+..+|. .+..+++|+ +|++++|... .+|......++|+.|++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 999999999987 88888888 999999845666654 588999999 9999997654 6666544448999999999
Q ss_pred Cc-CcCCCc-hhhcc-CCccEEEccCC
Q 048786 157 TA-IRRPTS-SIFLM-KNLRSLYFSGC 180 (862)
Q Consensus 157 ~~-~~~~~~-~l~~l-~~L~~L~L~~~ 180 (862)
|. ++.++. .+..+ ++|+.|++++|
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCC
Confidence 84 776543 33444 44444444443
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=2.2e-19 Score=205.77 Aligned_cols=271 Identities=19% Similarity=0.236 Sum_probs=123.3
Q ss_pred CCCcEEEeecCCCcccC--ccccCCCCCcEEEEeCCCCCC----ccccccCCCCCCCEEEeeCCCCCCccchh-hcCCC-
Q 048786 5 KDLSDLYLDGTSITEVP--SSIELLTGLELLTLKGCKNLS----SLPVTISSLKCLRTLELSGCSKLKKFPQI-VASME- 76 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~c~~l~~lp~~-i~~l~- 76 (862)
++|++|+++++++...+ ..+..+++|++|++++|.... .++..+..+++|++|++++|......+.. ...+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45566666666555332 224556666666666654221 33444555566666666665432222222 22233
Q ss_pred ---CCcEEEccCccCc-----ccCccCCCCCCCCEEEccCCCCccccccc-----ccCCCCCCEEEecCCCCCC----CC
Q 048786 77 ---DLSKLYLDGTSIA-----EVPSSIELLPGLELLYLNECKNLVRLPSS-----INGLKSLKTLNLSGCCKLE----NV 139 (862)
Q Consensus 77 ---~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-----l~~l~~L~~L~L~~c~~l~----~l 139 (862)
+|++|++++|.+. .++..+..+++|++|++++|......+.. ....++|++|++++|.... .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 4666666666555 23455556666666666655532211111 1123455666665554332 12
Q ss_pred CcccCCCCcccEEEccCCcCcCC-Cchhh-----ccCCccEEEccCCCCCCCc-----cccccccccccccCCCCCcccc
Q 048786 140 PDTLGKVESLEELDVSGTAIRRP-TSSIF-----LMKNLRSLYFSGCNEPPAS-----ASWHLHLPFNLLGKSSCPVALM 208 (862)
Q Consensus 140 p~~l~~l~~L~~L~l~~~~~~~~-~~~l~-----~l~~L~~L~L~~~~~~~~~-----~~~~~~~~l~~l~~~~~~~~~~ 208 (862)
+..+..+++|++|++++|.+... +..+. ..++|+.|++++|...... ........+..+....+.....
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33344445555555555554421 11111 1335555555555433210 0000112233333333322111
Q ss_pred ----c-cC-cCCCCCccEEEccCCCCCCCC---CCcccCCCCcccEEECcCCCCcc-----cccccc-CCCCCCEEeeec
Q 048786 209 ----L-PS-LTGVCSLTKLDLSDCGLGEAA---IPSDIDNLHSLKELYLNRNNFVT-----LPASIS-GLLNLEELELED 273 (862)
Q Consensus 209 ----l-p~-l~~l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~-~l~~L~~L~L~~ 273 (862)
+ +. ...+++|++|++++|.+++.. ++..+..+++|++|++++|.+.. +...+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 11 224566666666666655322 34444555666666666665542 222221 224666666666
Q ss_pred CC
Q 048786 274 CK 275 (862)
Q Consensus 274 c~ 275 (862)
|.
T Consensus 323 n~ 324 (461)
T 1z7x_W 323 CS 324 (461)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=4.1e-18 Score=186.69 Aligned_cols=221 Identities=19% Similarity=0.238 Sum_probs=152.5
Q ss_pred CCcEEEeecCCCcccCccccCC--CCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCc-cchhhcCCCCCcEEE
Q 048786 6 DLSDLYLDGTSITEVPSSIELL--TGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKK-FPQIVASMEDLSKLY 82 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~lp~~i~~L--~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~ 82 (862)
.++.++++++.+. +..++.+ +++++|+++++......+ .+..+++|++|++++|..... +|..+.++++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3678888887766 4556666 888888888865444433 366788888888888764433 777888888888888
Q ss_pred ccCccCc-ccCccCCCCCCCCEEEccCCCCcc--cccccccCCCCCCEEEecCCCCCCC--CCcccCCCC-cccEEEccC
Q 048786 83 LDGTSIA-EVPSSIELLPGLELLYLNECKNLV--RLPSSINGLKSLKTLNLSGCCKLEN--VPDTLGKVE-SLEELDVSG 156 (862)
Q Consensus 83 L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~c~~l~~--lp~~l~~l~-~L~~L~l~~ 156 (862)
+++|.+. ..+..++.+++|++|++++|..++ .++..+..+++|++|++++|..+.. ++..++.++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888777 456677788888888888885555 3666677788888888888744432 456667777 888888888
Q ss_pred Cc--C--cCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCC-CCCC
Q 048786 157 TA--I--RRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCG-LGEA 231 (862)
Q Consensus 157 ~~--~--~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~-l~~~ 231 (862)
|. + ..++..+..+++|+.|++++|..... ..++.+..+++|++|++++|. +.+.
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---------------------~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---------------------DCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---------------------GGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH---------------------HHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 74 3 24556666778888888877763221 112235566778888887774 3221
Q ss_pred CCCcccCCCCcccEEECcCC
Q 048786 232 AIPSDIDNLHSLKELYLNRN 251 (862)
Q Consensus 232 ~lp~~l~~l~~L~~L~L~~n 251 (862)
.+ ..+..+++|+.|++++|
T Consensus 264 ~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 264 TL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GG-GGGGGCTTCCEEECTTS
T ss_pred HH-HHHhcCCCCCEEeccCc
Confidence 11 24566777777777777
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=7.1e-19 Score=201.57 Aligned_cols=293 Identities=19% Similarity=0.219 Sum_probs=165.0
Q ss_pred CCCCCcEEEeecCCCccc-Cccc-cCCC----CCcEEEEeCCCCCC----ccccccCCCCCCCEEEeeCCCCCCccchhh
Q 048786 3 SMKDLSDLYLDGTSITEV-PSSI-ELLT----GLELLTLKGCKNLS----SLPVTISSLKCLRTLELSGCSKLKKFPQIV 72 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~l-p~~i-~~L~----~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i 72 (862)
.+++|++|++++|.+... +..+ ..+. +|++|++++|.... .+|..+..+++|++|++++|......+..+
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 467888888888877632 2222 2344 68888888865432 456677778888888888875332222222
Q ss_pred -----cCCCCCcEEEccCccCcc-----cCccCCCCCCCCEEEccCCCCccccccccc-----CCCCCCEEEecCCCCCC
Q 048786 73 -----ASMEDLSKLYLDGTSIAE-----VPSSIELLPGLELLYLNECKNLVRLPSSIN-----GLKSLKTLNLSGCCKLE 137 (862)
Q Consensus 73 -----~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~-----~l~~L~~L~L~~c~~l~ 137 (862)
...++|++|++++|.+.. ++..+..+++|++|++++|......+..+. ..++|++|++++|....
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 224567777777777663 344455667777777777663322222221 24567777777664433
Q ss_pred C----CCcccCCCCcccEEEccCCcCcCC------CchhhccCCccEEEccCCCCCCC-----ccccccccccccccCCC
Q 048786 138 N----VPDTLGKVESLEELDVSGTAIRRP------TSSIFLMKNLRSLYFSGCNEPPA-----SASWHLHLPFNLLGKSS 202 (862)
Q Consensus 138 ~----lp~~l~~l~~L~~L~l~~~~~~~~------~~~l~~l~~L~~L~L~~~~~~~~-----~~~~~~~~~l~~l~~~~ 202 (862)
. ++..+..+++|++|++++|.+... +.....+++|++|++++|..... .........+..+....
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 2 344555666666777766665432 11112356666666666643321 00011112344444444
Q ss_pred CCcccc----ccC--cCCCCCccEEEccCCCCCCCC---CCcccCCCCcccEEECcCCCCccc-c----ccccC-CCCCC
Q 048786 203 CPVALM----LPS--LTGVCSLTKLDLSDCGLGEAA---IPSDIDNLHSLKELYLNRNNFVTL-P----ASISG-LLNLE 267 (862)
Q Consensus 203 ~~~~~~----lp~--l~~l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~L~~n~l~~l-p----~~l~~-l~~L~ 267 (862)
+..... +.. ....++|++|++++|.+++.. ++..+..+++|++|++++|.+... + ..+.. .++|+
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceE
Confidence 433211 111 122357888888888776432 345556677888888888877632 2 22222 66788
Q ss_pred EEeeecCCCCC-----cCCCC---CCCCcEEeccCCC
Q 048786 268 ELELEDCKRLQ-----SLPQI---PPNLQFVRANGCS 296 (862)
Q Consensus 268 ~L~L~~c~~L~-----~lp~l---p~sL~~L~i~~C~ 296 (862)
+|++++|. ++ .+|.. .++|+.|++.+++
T Consensus 374 ~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 374 VLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 88888874 44 34432 3677888877774
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=4.2e-16 Score=168.69 Aligned_cols=197 Identities=23% Similarity=0.314 Sum_probs=166.0
Q ss_pred cCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCE
Q 048786 48 ISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKT 127 (862)
Q Consensus 48 l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 127 (862)
...+++|++|++++| .++.+| .+..+++|++|++++|.+..++. ++.+++|++|++++|. +..++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCE
Confidence 456899999999997 455666 68899999999999999999888 9999999999999987 55565 5889999999
Q ss_pred EEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccc
Q 048786 128 LNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVAL 207 (862)
Q Consensus 128 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (862)
|++++|.. ..++. ++.+++|+.|++++|.+..++. +..+++|+.|++++|....
T Consensus 112 L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~----------------------- 165 (308)
T 1h6u_A 112 LDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD----------------------- 165 (308)
T ss_dssp EECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-----------------------
T ss_pred EECCCCCC-CCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-----------------------
Confidence 99999765 44544 8999999999999999998876 8889999999999986432
Q ss_pred cccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCC
Q 048786 208 MLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLP 281 (862)
Q Consensus 208 ~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp 281 (862)
++.+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+..+++ +..+++|+.|++++|+ ++..|
T Consensus 166 -~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 166 -LTPLANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp -CGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred -ChhhcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence 2336778999999999999875 443 7889999999999999998884 8899999999999986 44444
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=8.5e-16 Score=169.46 Aligned_cols=232 Identities=18% Similarity=0.200 Sum_probs=161.8
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCccch-hhcCCCCCcE-EEcc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKFPQ-IVASMEDLSK-LYLD 84 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~-L~L~ 84 (862)
++++.++++++++|..+ .+++++|+|++| .++.+|. .|.++++|++|+|++|...+.+|. .|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888889999999876 468999999985 5777775 578899999999999877776664 5678888776 4556
Q ss_pred CccCcccC-ccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCc-ccCCC-CcccEEEccCCcCcC
Q 048786 85 GTSIAEVP-SSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPD-TLGKV-ESLEELDVSGTAIRR 161 (862)
Q Consensus 85 ~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l-~~L~~L~l~~~~~~~ 161 (862)
+|.+..++ ..++.+++|++|++++|......+..+....++..|++.++..+..++. .+..+ ..++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 68888875 4578889999999988765444444455666777888877666666554 23443 356677777777766
Q ss_pred CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccC-CCCCCCCCCc-ccCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSD-CGLGEAAIPS-DIDN 239 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~-~~l~~~~lp~-~l~~ 239 (862)
++.......+ |++|++.+ |.+. .+|. .+..
T Consensus 169 i~~~~f~~~~----------------------------------------------L~~l~l~~~n~l~--~i~~~~f~~ 200 (350)
T 4ay9_X 169 IHNSAFNGTQ----------------------------------------------LDELNLSDNNNLE--ELPNDVFHG 200 (350)
T ss_dssp ECTTSSTTEE----------------------------------------------EEEEECTTCTTCC--CCCTTTTTT
T ss_pred CChhhccccc----------------------------------------------hhHHhhccCCccc--CCCHHHhcc
Confidence 6554433334 45555543 2332 2443 4577
Q ss_pred CCcccEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCCCC--CCCCcEEec
Q 048786 240 LHSLKELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLPQI--PPNLQFVRA 292 (862)
Q Consensus 240 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~i 292 (862)
+++|+.|+|++|+++.+|.. .+.+|+.|.+.++..++.+|.+ .++|+.+++
T Consensus 201 l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp EECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred CcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 78888888888888888753 4677888888888888888754 255555554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=8.1e-18 Score=184.36 Aligned_cols=231 Identities=19% Similarity=0.257 Sum_probs=183.1
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCc-cccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSS-LPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~-lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+++++|+++++.+...+..+..+++|++|++++|..... +|..+..+++|++|++++|......|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 789999999999988777788999999999999874433 7777899999999999999766678899999999999999
Q ss_pred cCc-cCc--ccCccCCCCCCCCEEEccCCCCccc--ccccccCCC-CCCEEEecCCC-CC--CCCCcccCCCCcccEEEc
Q 048786 84 DGT-SIA--EVPSSIELLPGLELLYLNECKNLVR--LPSSINGLK-SLKTLNLSGCC-KL--ENVPDTLGKVESLEELDV 154 (862)
Q Consensus 84 ~~~-~i~--~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~l~~l~-~L~~L~L~~c~-~l--~~lp~~l~~l~~L~~L~l 154 (862)
++| .+. .++..++.+++|++|++++|..++. ++..+..++ +|++|++++|. .+ ..++..++.+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 999 677 3777788999999999999944543 677788899 99999999985 23 456677788999999999
Q ss_pred cCCc-Cc-CCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCC
Q 048786 155 SGTA-IR-RPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAA 232 (862)
Q Consensus 155 ~~~~-~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~ 232 (862)
++|. ++ ..+..+..+++|+.|++++|..... ..+..+..+++|++|++++| +.+..
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~---------------------~~~~~l~~~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP---------------------ETLLELGEIPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG---------------------GGGGGGGGCTTCCEEECTTS-SCTTC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH---------------------HHHHHHhcCCCCCEEeccCc-cCHHH
Confidence 9998 54 5577888999999999999973321 11223567899999999999 55433
Q ss_pred CCcccCCC-CcccEEECcCCCCcc-cccccc
Q 048786 233 IPSDIDNL-HSLKELYLNRNNFVT-LPASIS 261 (862)
Q Consensus 233 lp~~l~~l-~~L~~L~L~~n~l~~-lp~~l~ 261 (862)
+ ..+ .+++.|++++|.++. .|..++
T Consensus 288 ~----~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 288 L----QLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp H----HHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred H----HHHHhhCcceEEecccCccccCCccc
Confidence 2 222 236666688888874 344443
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=172.12 Aligned_cols=220 Identities=21% Similarity=0.209 Sum_probs=169.5
Q ss_pred CCcEEEeecCCCcc--cCc--cccCCCCCcEEEEeCCCCCCcccccc--CCCCCCCEEEeeCCCCCCccc----hhhcCC
Q 048786 6 DLSDLYLDGTSITE--VPS--SIELLTGLELLTLKGCKNLSSLPVTI--SSLKCLRTLELSGCSKLKKFP----QIVASM 75 (862)
Q Consensus 6 ~Lr~L~L~~~~i~~--lp~--~i~~L~~L~~L~Ls~c~~l~~lp~~l--~~l~~L~~L~L~~c~~l~~lp----~~i~~l 75 (862)
.++.|.+.+..+.. +.. ....+++|++|++++|......|..+ ..+++|++|++++|......| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46788888877652 211 12345779999999988777888877 889999999999987665444 445679
Q ss_pred CCCcEEEccCccCcccC-ccCCCCCCCCEEEccCCCCccc--cc--ccccCCCCCCEEEecCCCCCCCCCc----ccCCC
Q 048786 76 EDLSKLYLDGTSIAEVP-SSIELLPGLELLYLNECKNLVR--LP--SSINGLKSLKTLNLSGCCKLENVPD----TLGKV 146 (862)
Q Consensus 76 ~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp--~~l~~l~~L~~L~L~~c~~l~~lp~----~l~~l 146 (862)
++|++|++++|.+..++ ..++.+++|++|++++|+.... ++ ..++.+++|++|++++|.. +.++. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC
Confidence 99999999999998776 5688999999999999875432 22 3347899999999999765 44443 24678
Q ss_pred CcccEEEccCCcCcCC-Cchhhcc---CCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEE
Q 048786 147 ESLEELDVSGTAIRRP-TSSIFLM---KNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKL 221 (862)
Q Consensus 147 ~~L~~L~l~~~~~~~~-~~~l~~l---~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L 221 (862)
++|++|++++|.+... |..+..+ ++|++|++++|.... +|. + .++|++|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~------------------------lp~~~--~~~L~~L 277 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ------------------------VPKGL--PAKLRVL 277 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS------------------------CCSCC--CSCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc------------------------hhhhh--cCCCCEE
Confidence 9999999999999876 6666665 699999999987542 222 2 2789999
Q ss_pred EccCCCCCCCCCCcccCCCCcccEEECcCCCCcc
Q 048786 222 DLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVT 255 (862)
Q Consensus 222 ~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~ 255 (862)
++++|.++. +|. +..+++|+.|+|++|.++.
T Consensus 278 ~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNR--APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCS--CCC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCC--Cch-hhhCCCccEEECcCCCCCC
Confidence 999999975 454 6778999999999998763
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=9e-17 Score=170.68 Aligned_cols=218 Identities=17% Similarity=0.142 Sum_probs=151.8
Q ss_pred CCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccC
Q 048786 29 GLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNE 108 (862)
Q Consensus 29 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 108 (862)
++..+++..+ .+.... ....+++|+.|++++|. ++.++ .++.+++|++|++++|.+..++ .++.+++|++|++++
T Consensus 20 ~l~~l~l~~~-~~~~~~-~~~~l~~L~~L~l~~~~-i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKK-SVTDAV-TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCS-CTTSEE-CHHHHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCc-cccccc-ccccccceeeeeeCCCC-ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 3444445443 233222 25668999999999964 45544 5888999999999999998865 789999999999999
Q ss_pred CCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch-hhccCCccEEEccCCCCCCCcc
Q 048786 109 CKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS-IFLMKNLRSLYFSGCNEPPASA 187 (862)
Q Consensus 109 ~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~ 187 (862)
|......+..+..+++|++|++++|......+..++.+++|+.|++++|.++.++.. +..+++|+.|++++|.....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 172 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-- 172 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc--
Confidence 876555555679999999999999877666666689999999999999999877654 46677777777777653321
Q ss_pred ccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCC
Q 048786 188 SWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNL 266 (862)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 266 (862)
.+. +..+++|++|++++|.+.+ ..+..+..+++|+.|++++|.+. +.+++|
T Consensus 173 ---------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l 224 (272)
T 3rfs_A 173 ---------------------PEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD------CTCPGI 224 (272)
T ss_dssp ---------------------CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC------CCTTTT
T ss_pred ---------------------CHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCcc------ccCcHH
Confidence 111 4556667777777776653 23344566666777777666543 234455
Q ss_pred CEEeeecCCCCCcCC
Q 048786 267 EELELEDCKRLQSLP 281 (862)
Q Consensus 267 ~~L~L~~c~~L~~lp 281 (862)
+.|++..+..-..+|
T Consensus 225 ~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 225 RYLSEWINKHSGVVR 239 (272)
T ss_dssp HHHHHHHHHTGGGBB
T ss_pred HHHHHHHHhCCCccc
Confidence 555555554433444
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=2.3e-18 Score=192.83 Aligned_cols=242 Identities=18% Similarity=0.177 Sum_probs=159.9
Q ss_pred CCCcccCccccCCCCCcEEEEeCCCCCCc----cccccCCCCCCCEEEeeCCCC--C-Cccchhh-------cCCCCCcE
Q 048786 15 TSITEVPSSIELLTGLELLTLKGCKNLSS----LPVTISSLKCLRTLELSGCSK--L-KKFPQIV-------ASMEDLSK 80 (862)
Q Consensus 15 ~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L~~c~~--l-~~lp~~i-------~~l~~L~~ 80 (862)
..+..++..+..+++|++|+|++|..... ++..+.++++|++|+|++|.. + ..+|..+ .++++|++
T Consensus 19 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 19 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 33446777888899999999998754443 344477889999999998632 2 2345444 68888999
Q ss_pred EEccCccCcc-----cCccCCCCCCCCEEEccCCCCccc----ccccccCC---------CCCCEEEecCCCCC-CCCC-
Q 048786 81 LYLDGTSIAE-----VPSSIELLPGLELLYLNECKNLVR----LPSSINGL---------KSLKTLNLSGCCKL-ENVP- 140 (862)
Q Consensus 81 L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~----lp~~l~~l---------~~L~~L~L~~c~~l-~~lp- 140 (862)
|++++|.+.. +|..+..+++|++|++++|..... ++..+..+ ++|++|++++|... ..++
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 9999888875 677778888888888888875322 23333334 78888888887654 2333
Q ss_pred --cccCCCCcccEEEccCCcCcC------CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-
Q 048786 141 --DTLGKVESLEELDVSGTAIRR------PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS- 211 (862)
Q Consensus 141 --~~l~~l~~L~~L~l~~~~~~~------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~- 211 (862)
..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|...... ...+|.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~~ 239 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAIA 239 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHHH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHHH
Confidence 345667788888888887761 2235666777777777776532100 011222
Q ss_pred cCCCCCccEEEccCCCCCCCC---CCccc--CCCCcccEEECcCCCCcc-----ccccc-cCCCCCCEEeeecCC
Q 048786 212 LTGVCSLTKLDLSDCGLGEAA---IPSDI--DNLHSLKELYLNRNNFVT-----LPASI-SGLLNLEELELEDCK 275 (862)
Q Consensus 212 l~~l~~L~~L~Ls~~~l~~~~---lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~c~ 275 (862)
+..+++|++|+|++|.+++.+ ++..+ +.+++|++|+|++|.+.. +|..+ .++++|++|++++|+
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 556677777777777765321 23444 336777777777777775 67666 557777777777765
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=169.15 Aligned_cols=224 Identities=21% Similarity=0.214 Sum_probs=173.4
Q ss_pred CCCCcEEEEeCCCCCC----ccccccCCCCCCCEEEeeCCCCCCccchhh--cCCCCCcEEEccCccCccc-C----ccC
Q 048786 27 LTGLELLTLKGCKNLS----SLPVTISSLKCLRTLELSGCSKLKKFPQIV--ASMEDLSKLYLDGTSIAEV-P----SSI 95 (862)
Q Consensus 27 L~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i--~~l~~L~~L~L~~~~i~~l-p----~~i 95 (862)
...++.+.+.++.... .++. ...+++|++|++++|......|..+ +++++|++|++++|.+... + ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3457888888764322 1222 2235779999999998777888887 8999999999999999853 2 235
Q ss_pred CCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCC--C--CcccCCCCcccEEEccCCcCcCCCch----hh
Q 048786 96 ELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLEN--V--PDTLGKVESLEELDVSGTAIRRPTSS----IF 167 (862)
Q Consensus 96 ~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~--l--p~~l~~l~~L~~L~l~~~~~~~~~~~----l~ 167 (862)
..+++|++|++++|......+..++.+++|++|++++|...+. + +..++.+++|++|++++|.++.++.. +.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 6799999999999987666778899999999999999875532 2 23347889999999999999876553 46
Q ss_pred ccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEE
Q 048786 168 LMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELY 247 (862)
Q Consensus 168 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~ 247 (862)
.+++|++|++++|......+ ..+..+..+++|++|++++|+++ .+|..+. ++|+.|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p-------------------~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN-------------------PSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLD 278 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC-------------------SCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEE
T ss_pred cCCCCCEEECCCCCCCccch-------------------hhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEE
Confidence 78999999999988543210 00111333479999999999997 4787764 8999999
Q ss_pred CcCCCCccccccccCCCCCCEEeeecCC
Q 048786 248 LNRNNFVTLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 248 L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 275 (862)
|++|+++.+|. +..+++|+.|++++|+
T Consensus 279 Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 279 LSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 99999998876 7889999999999986
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2.3e-15 Score=157.78 Aligned_cols=178 Identities=20% Similarity=0.213 Sum_probs=150.9
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEcc
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~ 84 (862)
.+.+++++++++++.+|..+. ++|++|++++|......|..+.++++|++|+|++|......|..+.++++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356899999999999998776 699999999977665556679999999999999987666667778999999999999
Q ss_pred CccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCC
Q 048786 85 GTSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPT 163 (862)
Q Consensus 85 ~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 163 (862)
+|.+..+|.. ++.+++|++|++++|......+..+..+++|++|++++|......+..++.+++|+.|++++|.+..++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 9999988754 789999999999998754444445789999999999998655544557899999999999999999886
Q ss_pred c-hhhccCCccEEEccCCCCCC
Q 048786 164 S-SIFLMKNLRSLYFSGCNEPP 184 (862)
Q Consensus 164 ~-~l~~l~~L~~L~L~~~~~~~ 184 (862)
. .+..+++|+.|++++|....
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 5 67889999999999988543
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=4e-17 Score=182.69 Aligned_cols=236 Identities=17% Similarity=0.213 Sum_probs=182.1
Q ss_pred CCCCCcEEEeecCCCcc-----cCccccCCCCCcEEEEeCCC--CC-Ccccccc-------CCCCCCCEEEeeCCCCCC-
Q 048786 3 SMKDLSDLYLDGTSITE-----VPSSIELLTGLELLTLKGCK--NL-SSLPVTI-------SSLKCLRTLELSGCSKLK- 66 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~Ls~c~--~l-~~lp~~l-------~~l~~L~~L~L~~c~~l~- 66 (862)
.+++|++|+|++|.+.. ++..+..+++|++|+|++|. .+ ..+|..+ ..+++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 46899999999998873 45567889999999999963 22 2345444 789999999999987655
Q ss_pred ---ccchhhcCCCCCcEEEccCccCcc-----cCccCCCC---------CCCCEEEccCCCCc-cccc---ccccCCCCC
Q 048786 67 ---KFPQIVASMEDLSKLYLDGTSIAE-----VPSSIELL---------PGLELLYLNECKNL-VRLP---SSINGLKSL 125 (862)
Q Consensus 67 ---~lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L---------~~L~~L~L~~~~~l-~~lp---~~l~~l~~L 125 (862)
.+|..+.++++|++|++++|.+.. ++..+..+ ++|++|++++|... ..++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 478899999999999999999863 33334444 89999999998754 3344 467789999
Q ss_pred CEEEecCCCCCC-----CCCcccCCCCcccEEEccCCcC-----cCCCchhhccCCccEEEccCCCCCCCcccccccccc
Q 048786 126 KTLNLSGCCKLE-----NVPDTLGKVESLEELDVSGTAI-----RRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPF 195 (862)
Q Consensus 126 ~~L~L~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l 195 (862)
++|++++|.... .++..+..+++|+.|++++|.+ ..++..+..+++|+.|++++|.......
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------- 261 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-------- 261 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH--------
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH--------
Confidence 999999986542 2344788999999999999998 4567788899999999999987432100
Q ss_pred ccccCCCCCccccccC-c--CCCCCccEEEccCCCCCCC---CCCccc-CCCCcccEEECcCCCCcccc
Q 048786 196 NLLGKSSCPVALMLPS-L--TGVCSLTKLDLSDCGLGEA---AIPSDI-DNLHSLKELYLNRNNFVTLP 257 (862)
Q Consensus 196 ~~l~~~~~~~~~~lp~-l--~~l~~L~~L~Ls~~~l~~~---~lp~~l-~~l~~L~~L~L~~n~l~~lp 257 (862)
..++. + ..+++|+.|+|++|.+++. .+|..+ ..+++|++|++++|.+....
T Consensus 262 -----------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 -----------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp -----------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred -----------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 01222 3 3488999999999998642 366666 56899999999999988544
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1.4e-14 Score=159.68 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=134.2
Q ss_pred CCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCcc-chhhcCCCCCcEE
Q 048786 5 KDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKF-PQIVASMEDLSKL 81 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L 81 (862)
+++++|+|++|+|+.+|. .|+.+++|++|+|++|...+.+|. .+.++++|+++...++..+..+ |..++++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 579999999999999986 689999999999999887787775 4788999887665554566665 6778999999999
Q ss_pred EccCccCcccCcc-CCCCCCCCEEEccCCCCcccccc-cccCCC-CCCEEEecCCCCCCCCCcccCCCCcccEEEccC-C
Q 048786 82 YLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPS-SINGLK-SLKTLNLSGCCKLENVPDTLGKVESLEELDVSG-T 157 (862)
Q Consensus 82 ~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~l~-~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~-~ 157 (862)
++++|++..+|.. +....++..|++.++..+..++. .+..+. .++.|++++|. ++.++.......+|++|++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCC
Confidence 9999999988764 45667888999988777777765 355554 68999999864 566777777778999999974 6
Q ss_pred cCcCCCch-hhccCCccEEEccCC
Q 048786 158 AIRRPTSS-IFLMKNLRSLYFSGC 180 (862)
Q Consensus 158 ~~~~~~~~-l~~l~~L~~L~L~~~ 180 (862)
.++.+|.. +..+++|+.|++++|
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTS
T ss_pred cccCCCHHHhccCcccchhhcCCC
Confidence 67666543 344444444444443
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=1.4e-16 Score=188.54 Aligned_cols=204 Identities=14% Similarity=0.025 Sum_probs=103.1
Q ss_pred hcCCCCCcEEEccCccCc-----ccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCC---CCCCccc
Q 048786 72 VASMEDLSKLYLDGTSIA-----EVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKL---ENVPDTL 143 (862)
Q Consensus 72 i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l---~~lp~~l 143 (862)
..++++|++|+++++.+. .++..+..+++|+.|++++|. +..+|..+..+++|++|+++++... ...+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 344444555555444443 222223445555555555543 2334444555555555555542222 2233445
Q ss_pred CCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEE
Q 048786 144 GKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLD 222 (862)
Q Consensus 144 ~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~ 222 (862)
..+++|+.|++.++....++..+..+++|++|++++|.... ..++. +..+++|++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~----------------------~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET----------------------EDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH----------------------HHHHHHHTTCTTCCEEE
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH----------------------HHHHHHHHhCcCCCEEe
Confidence 56666666666665555566666667777777777766211 01111 35566677777
Q ss_pred ccCCCCCCCCCCcccCCCCcccEEECcC----------C-CCc--cccccccCCCCCCEEeeecCCCCCcC-----CCCC
Q 048786 223 LSDCGLGEAAIPSDIDNLHSLKELYLNR----------N-NFV--TLPASISGLLNLEELELEDCKRLQSL-----PQIP 284 (862)
Q Consensus 223 Ls~~~l~~~~lp~~l~~l~~L~~L~L~~----------n-~l~--~lp~~l~~l~~L~~L~L~~c~~L~~l-----p~lp 284 (862)
++ +.+.+..++.....+++|++|++++ + .++ .++.....+++|++|++ +|..++.- ....
T Consensus 325 L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 325 TR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYL 402 (592)
T ss_dssp EE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHC
T ss_pred cc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhC
Confidence 76 3333333444445566677777762 2 333 23333445667777776 33333321 1123
Q ss_pred CCCcEEeccC---CCCcee
Q 048786 285 PNLQFVRANG---CSSLVT 300 (862)
Q Consensus 285 ~sL~~L~i~~---C~~L~~ 300 (862)
++|+.|++.+ |..++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITD 421 (592)
T ss_dssp CSCCEEEEEECSCCSCCSS
T ss_pred CCCcEEEEeecCCCccccC
Confidence 5666666653 444444
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=3.3e-16 Score=173.64 Aligned_cols=247 Identities=17% Similarity=0.164 Sum_probs=147.5
Q ss_pred EEEeecCCCc-ccCccccCCCCCcEEEEeCCCCCCccc-----cccCCCC-CCCEEEeeCCCCCCccchhhcCC-----C
Q 048786 9 DLYLDGTSIT-EVPSSIELLTGLELLTLKGCKNLSSLP-----VTISSLK-CLRTLELSGCSKLKKFPQIVASM-----E 76 (862)
Q Consensus 9 ~L~L~~~~i~-~lp~~i~~L~~L~~L~Ls~c~~l~~lp-----~~l~~l~-~L~~L~L~~c~~l~~lp~~i~~l-----~ 76 (862)
++.++.+++. .+|..+...++|++|++++|. ++..+ ..+..++ +|++|+|++|......+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4567777777 445555556669999998866 44433 4566777 88888888875555545555554 8
Q ss_pred CCcEEEccCccCcccCcc-----CCCC-CCCCEEEccCCCCccccccc----ccC-CCCCCEEEecCCCCCC----CCCc
Q 048786 77 DLSKLYLDGTSIAEVPSS-----IELL-PGLELLYLNECKNLVRLPSS----ING-LKSLKTLNLSGCCKLE----NVPD 141 (862)
Q Consensus 77 ~L~~L~L~~~~i~~lp~~-----i~~L-~~L~~L~L~~~~~l~~lp~~----l~~-l~~L~~L~L~~c~~l~----~lp~ 141 (862)
+|++|++++|.+...+.. +..+ ++|++|++++|......+.. +.. .++|++|++++|.... .++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 888888888888754432 4444 78888888887743332222 333 2578888888765442 2233
Q ss_pred ccCCCC-cccEEEccCCcCcCCCc-----hhhcc-CCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cC
Q 048786 142 TLGKVE-SLEELDVSGTAIRRPTS-----SIFLM-KNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LT 213 (862)
Q Consensus 142 ~l~~l~-~L~~L~l~~~~~~~~~~-----~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~ 213 (862)
.+..++ +|++|++++|.++.... .+... ++|+.|++++|....... ..++. +.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-------------------~~l~~~l~ 221 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-------------------AELAYIFS 221 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-------------------HHHHHHHH
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-------------------HHHHHHHh
Confidence 334444 77788887777764432 22333 477777777765321100 01111 22
Q ss_pred C-CCCccEEEccCCCCCCCCC---CcccCCCCcccEEECcCCCCc--------cccccccCCCCCCEEeeecCC
Q 048786 214 G-VCSLTKLDLSDCGLGEAAI---PSDIDNLHSLKELYLNRNNFV--------TLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 214 ~-l~~L~~L~Ls~~~l~~~~l---p~~l~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~c~ 275 (862)
. .++|++|++++|.+++.+. ...+..+++|+.|++++|.+. .++..+..+++|+.|++++++
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2 2467777777777654322 233456667777777776622 333445556666666666654
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=3.7e-14 Score=148.48 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=43.0
Q ss_pred CCcEEEccCccCcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEcc
Q 048786 77 DLSKLYLDGTSIAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVS 155 (862)
Q Consensus 77 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~ 155 (862)
++++|+++++.+..++. .++.+++|++|++++|......+..+..+++|++|++++|......+..++.+++|+.|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44444444444443332 24444445555554444333333334555555555555544433333445566666666666
Q ss_pred CCcCcCCCc
Q 048786 156 GTAIRRPTS 164 (862)
Q Consensus 156 ~~~~~~~~~ 164 (862)
+|.++.++.
T Consensus 116 ~N~l~~~~~ 124 (251)
T 3m19_A 116 GNQLKSLPS 124 (251)
T ss_dssp SSCCCCCCT
T ss_pred CCcCCCcCh
Confidence 666555443
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.3e-14 Score=146.16 Aligned_cols=152 Identities=17% Similarity=0.271 Sum_probs=104.9
Q ss_pred cCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcc-cCccCCCCCCCCE
Q 048786 25 ELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAE-VPSSIELLPGLEL 103 (862)
Q Consensus 25 ~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~ 103 (862)
+.+++|++|++++| .++.+| .+..+++|++|++++| .+..+ ..+.++++|++|++++|.+.. .|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55667777777764 344666 4666777777777776 34333 356677777777777777764 5666777777777
Q ss_pred EEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCC
Q 048786 104 LYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNE 182 (862)
Q Consensus 104 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 182 (862)
|++++|......|..++.+++|++|++++|..++.++ .++.+++|+.|++++|.+..++ .+..+++|+.|++++|..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 7777776655566667777777777777776555565 5777777888888888777766 667778888888877763
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=3.3e-14 Score=152.35 Aligned_cols=169 Identities=24% Similarity=0.353 Sum_probs=144.4
Q ss_pred CCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 3 SMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
.+++|++|+++++.++.++ .++.+++|++|++++|. ++.++. +..+++|++|++++|. ++.+|. ++++++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 4678999999999999987 48999999999999964 566666 8999999999999975 555554 89999999999
Q ss_pred ccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC
Q 048786 83 LDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 83 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
+++|.+..+ ..++.+++|+.|++++|.. ..+ ..+..+++|++|++++|.... ++. +..+++|+.|++++|.++.+
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCCCC
Confidence 999999987 4688999999999999864 445 568899999999999976544 444 89999999999999999988
Q ss_pred CchhhccCCccEEEccCCCC
Q 048786 163 TSSIFLMKNLRSLYFSGCNE 182 (862)
Q Consensus 163 ~~~l~~l~~L~~L~L~~~~~ 182 (862)
+. +..+++|+.|++++|..
T Consensus 194 ~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEEE
T ss_pred hh-hccCCCCCEEECcCCcc
Confidence 65 88899999999998763
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=4.4e-14 Score=164.58 Aligned_cols=191 Identities=21% Similarity=0.223 Sum_probs=110.0
Q ss_pred CCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccC
Q 048786 29 GLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNE 108 (862)
Q Consensus 29 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 108 (862)
+|++|++++|. ++.+|..+. ++|++|+|++| .++.+| +.+++|++|++++|.+..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 55566665532 444555442 55666666654 233455 345566666666666666555 443 666666666
Q ss_pred CCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccc
Q 048786 109 CKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASAS 188 (862)
Q Consensus 109 ~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 188 (862)
|. +..+|. .+++|+.|++++|.. ..+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.....+.
T Consensus 130 N~-l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SC-CSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred Cc-CCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 54 333554 456666666666543 33444 45666677777776666665 43 667777776665432110
Q ss_pred cccccccccccCCCCCccccccC--cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCc-cccccccCC
Q 048786 189 WHLHLPFNLLGKSSCPVALMLPS--LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFV-TLPASISGL 263 (862)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~lp~--l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l 263 (862)
++. ....+.|+.|++++|.++. +|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 198 --------------------~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 --------------------VPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp --------------------CC--------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred --------------------HHHhhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 000 1122334888888888864 7887777888888888888886 456555443
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=8.2e-16 Score=170.41 Aligned_cols=233 Identities=15% Similarity=0.088 Sum_probs=172.9
Q ss_pred CCCCcEEEeecCCCcccC-----ccccCCC-CCcEEEEeCCCCCCccccccCCC-----CCCCEEEeeCCCCCCccchh-
Q 048786 4 MKDLSDLYLDGTSITEVP-----SSIELLT-GLELLTLKGCKNLSSLPVTISSL-----KCLRTLELSGCSKLKKFPQI- 71 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~Ls~c~~l~~lp~~l~~l-----~~L~~L~L~~c~~l~~lp~~- 71 (862)
.++|++|+|++|.++..+ ..+..++ +|++|+|++|......+..+..+ ++|++|+|++|......+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 456999999999998776 6778888 99999999986555445555554 99999999998755455553
Q ss_pred ---hcCC-CCCcEEEccCccCcccCcc-----CCC-CCCCCEEEccCCCCcc----cccccccCCC-CCCEEEecCCCCC
Q 048786 72 ---VASM-EDLSKLYLDGTSIAEVPSS-----IEL-LPGLELLYLNECKNLV----RLPSSINGLK-SLKTLNLSGCCKL 136 (862)
Q Consensus 72 ---i~~l-~~L~~L~L~~~~i~~lp~~-----i~~-L~~L~~L~L~~~~~l~----~lp~~l~~l~-~L~~L~L~~c~~l 136 (862)
+..+ ++|++|++++|.+...+.. +.. .++|++|++++|.... .++..+..++ +|++|++++|...
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 4455 8999999999999866542 444 3699999999987553 3445556666 9999999998765
Q ss_pred CCCCcc----cCCC-CcccEEEccCCcCcC-----CCchhhc-cCCccEEEccCCCCCCCccccccccccccccCCCCCc
Q 048786 137 ENVPDT----LGKV-ESLEELDVSGTAIRR-----PTSSIFL-MKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPV 205 (862)
Q Consensus 137 ~~lp~~----l~~l-~~L~~L~l~~~~~~~-----~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 205 (862)
...+.. +... ++|+.|++++|.+.. ++..+.. .++|++|++++|........
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----------------- 243 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE----------------- 243 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH-----------------
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH-----------------
Confidence 544433 3445 599999999999986 5556666 45999999999875432110
Q ss_pred cccccC-cCCCCCccEEEccCCCCCCC------CCCcccCCCCcccEEECcCCCCcc
Q 048786 206 ALMLPS-LTGVCSLTKLDLSDCGLGEA------AIPSDIDNLHSLKELYLNRNNFVT 255 (862)
Q Consensus 206 ~~~lp~-l~~l~~L~~L~Ls~~~l~~~------~lp~~l~~l~~L~~L~L~~n~l~~ 255 (862)
.+.. +..+++|++|++++|.+.+. .++..+..+++|+.|++++|++..
T Consensus 244 --~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 244 --NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp --HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred --HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 1111 56778999999999984321 134567788999999999998874
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=4.6e-14 Score=142.02 Aligned_cols=152 Identities=18% Similarity=0.250 Sum_probs=131.6
Q ss_pred CCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 3 SMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
++++|++|+++++.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++++++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4578999999999999999 7999999999999998 566665 588899999999999876666788899999999999
Q ss_pred ccCccCcc-cCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 83 LDGTSIAE-VPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 83 L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
+++|.+.. .|..++.+++|++|++++|..++.+| .+..+++|++|++++|.. ..++ .+..+++|+.|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcccC
Confidence 99999985 67779999999999999998778887 589999999999999764 4455 7889999999999999875
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.1e-13 Score=161.10 Aligned_cols=181 Identities=23% Similarity=0.278 Sum_probs=146.4
Q ss_pred CCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecC
Q 048786 53 CLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSG 132 (862)
Q Consensus 53 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 132 (862)
+|++|++++|. ++.+|..+. ++|++|++++|.+..+| +.+++|++|++++|. ++.+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 89999999964 566887663 78999999999999998 568999999999986 455887 665 999999999
Q ss_pred CCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccCc
Q 048786 133 CCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPSL 212 (862)
Q Consensus 133 c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~l 212 (862)
|... .+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.... +|.+
T Consensus 130 N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~------------------------lp~l 178 (571)
T 3cvr_A 130 NQLT-MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF------------------------LPEL 178 (571)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC------------------------CCCC
T ss_pred CcCC-CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC------------------------cchh
Confidence 7544 4776 68899999999999998887 57899999999987432 3332
Q ss_pred CCCCCccEEEccCCCCCCCCCCcccCCCCcc-------cEEECcCCCCccccccccCCCCCCEEeeecCCCCCcCC
Q 048786 213 TGVCSLTKLDLSDCGLGEAAIPSDIDNLHSL-------KELYLNRNNFVTLPASISGLLNLEELELEDCKRLQSLP 281 (862)
Q Consensus 213 ~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L-------~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~L~~lp 281 (862)
. ++|+.|++++|.++. +|. +.. +| +.|+|++|.++.+|..+..+++|+.|++++|+.-..+|
T Consensus 179 ~--~~L~~L~Ls~N~L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLES--LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C--TTCCEEECCSSCCSS--CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred h--CCCCEEECcCCCCCc--hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 2 789999999999874 777 544 77 99999999999999999899999999999987544443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=9.9e-14 Score=148.68 Aligned_cols=169 Identities=25% Similarity=0.455 Sum_probs=102.2
Q ss_pred CCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEE
Q 048786 49 SSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTL 128 (862)
Q Consensus 49 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 128 (862)
..+++|++|++++| .++.++ .++.+++|++|++++|.+..++. +..+++|++|++++|. +..++.
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~----------- 107 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS----------- 107 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-----------
T ss_pred hhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-----------
Confidence 34566666666664 333333 25556666666666666655554 5555555555555544 222322
Q ss_pred EecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCcccc
Q 048786 129 NLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALM 208 (862)
Q Consensus 129 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (862)
++.+++|+.|++++|.+..+ ..+..+++|+.|++++|....
T Consensus 108 --------------l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~------------------------ 148 (291)
T 1h6t_A 108 --------------LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD------------------------ 148 (291)
T ss_dssp --------------GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC------------------------
T ss_pred --------------hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc------------------------
Confidence 44445555555555554443 234455566666665554321
Q ss_pred ccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccccccCCCCCCEEeeecCC
Q 048786 209 LPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASISGLLNLEELELEDCK 275 (862)
Q Consensus 209 lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 275 (862)
++.+..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+..+|. +..+++|+.|++++|+
T Consensus 149 ~~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 149 ITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred chhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 1225566778888888887764 333 7778888888888888888764 7888888888888875
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=8e-14 Score=141.47 Aligned_cols=147 Identities=19% Similarity=0.249 Sum_probs=71.8
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
+.++.++++++.+|..+ .++|++|++++|. ++.+|. .+..+++|++|++++|......+..++++++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555566666666443 3466666666643 233332 3455555555555554322222223445555555555555
Q ss_pred cCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCch-
Q 048786 87 SIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSS- 165 (862)
Q Consensus 87 ~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~- 165 (862)
.+..+|.. .+..+++|++|++++|......+..++.+++|+.|++++|.++.++..
T Consensus 87 ~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 87 QLQSLPNG-----------------------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp CCCCCCTT-----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCCccCHh-----------------------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 55544433 234445555555554433322233345556666666666655554432
Q ss_pred hhccCCccEEEccCC
Q 048786 166 IFLMKNLRSLYFSGC 180 (862)
Q Consensus 166 l~~l~~L~~L~L~~~ 180 (862)
+..+++|+.|++++|
T Consensus 144 ~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred hccCCCccEEEecCC
Confidence 344445555555444
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=4.8e-16 Score=183.97 Aligned_cols=291 Identities=18% Similarity=0.165 Sum_probs=167.4
Q ss_pred CCCCCcEEEeecCC-Cccc---C------------ccccCCCCCcEEEEeCCCCCCccccccC-CCCCCCEEEeeCCCCC
Q 048786 3 SMKDLSDLYLDGTS-ITEV---P------------SSIELLTGLELLTLKGCKNLSSLPVTIS-SLKCLRTLELSGCSKL 65 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~-i~~l---p------------~~i~~L~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~c~~l 65 (862)
.+++|++|+++++. +.++ | .....+++|++|++++|......+..+. .+++|++|++++|..+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 47889999998854 2222 1 2234678899999998764444444453 5789999999988655
Q ss_pred Cc--cchhhcCCCCCcEEEccCccCcc-----cCccCCCCCCCCEEEccCCC-Cc--ccccccccCCCCCCEEEecCCCC
Q 048786 66 KK--FPQIVASMEDLSKLYLDGTSIAE-----VPSSIELLPGLELLYLNECK-NL--VRLPSSINGLKSLKTLNLSGCCK 135 (862)
Q Consensus 66 ~~--lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~-~l--~~lp~~l~~l~~L~~L~L~~c~~ 135 (862)
+. ++..+.++++|++|++++|.+.. ++.....+++|+.|++++|. .+ ..++..+..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 54 56666788899999998887653 33334577888889888875 11 11222234568888888888755
Q ss_pred CCCCCcccCCCCcccEEEccCCc-------------------------------CcCCCchhhccCCccEEEccCCCCCC
Q 048786 136 LENVPDTLGKVESLEELDVSGTA-------------------------------IRRPTSSIFLMKNLRSLYFSGCNEPP 184 (862)
Q Consensus 136 l~~lp~~l~~l~~L~~L~l~~~~-------------------------------~~~~~~~l~~l~~L~~L~L~~~~~~~ 184 (862)
.+.++..+..+++|+.|++..+. ...++..+..+++|++|++++|...
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~- 302 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ- 302 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC-
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC-
Confidence 55555556666666666644331 1123333445677888888777622
Q ss_pred Ccccc---ccccccccccCCCCCccccccC-cCCCCCccEEEccC---------CCCCCCCCCcccCCCCcccEEECcCC
Q 048786 185 ASASW---HLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSD---------CGLGEAAIPSDIDNLHSLKELYLNRN 251 (862)
Q Consensus 185 ~~~~~---~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~---------~~l~~~~lp~~l~~l~~L~~L~L~~n 251 (862)
..... .....++.+....+.....++. ...+++|++|++++ +.+++..+......+++|+.|.+.++
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 11110 0112233333333311112222 22366777777733 22322222222223667777766666
Q ss_pred CCccc-cccc-cCCCCCCEEeee-----cCCCCCcCCC---------CCCCCcEEeccC
Q 048786 252 NFVTL-PASI-SGLLNLEELELE-----DCKRLQSLPQ---------IPPNLQFVRANG 294 (862)
Q Consensus 252 ~l~~l-p~~l-~~l~~L~~L~L~-----~c~~L~~lp~---------lp~sL~~L~i~~ 294 (862)
.++.. +..+ ..+++|+.|++. +|..++..|. ..++|+.|++.+
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 66521 2222 347778888887 5666664432 125677777654
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=2e-13 Score=139.89 Aligned_cols=150 Identities=23% Similarity=0.310 Sum_probs=115.4
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccc-cccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLP-VTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
+.+++++++++++|..+. ++|++|++++|. ++.+| ..+..+++|++|+|++|......|..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567888888888887665 688999998865 44444 46788888999999887665556788888888889988888
Q ss_pred cCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 87 SIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 87 ~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
.+..+|.. +..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88888766 577888888888887765555667778888888888886655555556777778888888777664
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=5.8e-14 Score=165.24 Aligned_cols=130 Identities=20% Similarity=0.300 Sum_probs=66.1
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCE
Q 048786 24 IELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLEL 103 (862)
Q Consensus 24 i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 103 (862)
+..+++|++|++++|. +..+|. +..+++|++|+|++|. +..+|. +.++++|++|+|++|.+..+| .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 3456666666666543 444443 5556666666666643 333333 556666666666666665544 4555555555
Q ss_pred EEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC
Q 048786 104 LYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 104 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
|++++|.. ..++ .+..+++|+.|++++|.... + ..++.+++|+.|++++|.+..+
T Consensus 114 L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 114 LSLEHNGI-SDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp EECTTSCC-CCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCC
T ss_pred EEecCCCC-CCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCc
Confidence 55555542 2222 24445555555555543222 2 3344444444444444444433
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=4e-13 Score=136.28 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=101.3
Q ss_pred CCCcEEEccCccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEc
Q 048786 76 EDLSKLYLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDV 154 (862)
Q Consensus 76 ~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 154 (862)
++|++|+++++.+..++.. ++.+++|++|++++|+.....+..+..+++|++|++++|......+..++.+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 3566666666666665544 566777777777776543333334677888888888887655444455789999999999
Q ss_pred cCCcCcCCCch-hhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC-cCCCCCccEEEccCCCCCCCC
Q 048786 155 SGTAIRRPTSS-IFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS-LTGVCSLTKLDLSDCGLGEAA 232 (862)
Q Consensus 155 ~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~-l~~l~~L~~L~Ls~~~l~~~~ 232 (862)
++|.+..++.. +..+++|+.|++++|..... .+. +..+++|+.|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-----------------------~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-----------------------PDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-----------------------CTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCcccee-----------------------CHHHhccCCCccEEEecCCCee---
Confidence 99999877654 56677777777776653311 111 445566666666666432
Q ss_pred CCcccCCCCcccEEECcCCCCc-cccccccCCCC
Q 048786 233 IPSDIDNLHSLKELYLNRNNFV-TLPASISGLLN 265 (862)
Q Consensus 233 lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 265 (862)
+.+++|+.|++..|+++ .+|.+++.++.
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 23455666666666555 55655554443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=6.7e-13 Score=136.86 Aligned_cols=149 Identities=23% Similarity=0.274 Sum_probs=98.8
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccc-hhhcCCCCCcEEEccCc
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFP-QIVASMEDLSKLYLDGT 86 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~ 86 (862)
+.++.++++++.+|..+. ++|++|+|++|......|..+..+++|++|+|++|.. +.+| ..++++++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence 456777777777776554 7777777777655444466677777777777777643 4444 44577777777777777
Q ss_pred cCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 87 SIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 87 ~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
.+..+|.. ++.+++|++|++++|. +..+|..+..+++|++|++++|......+..+..+++|+.|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77776654 4667777777777765 4466666777777777777775444333344666677777777776655
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=6.2e-13 Score=136.22 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=101.4
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcc-c-cccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSL-P-VTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG 85 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~l-p-~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 85 (862)
++++++++.++.+|..+. ..+++|++++|. ++.+ | ..+..+++|++|+|++|......+..++++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 577888888888876553 345788888754 4444 3 2366777788888777654443444677777777777777
Q ss_pred ccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 86 TSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 86 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
|.+..++.. ++.+++|++|++++|......|..+..+++|++|++++|......|..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777766654 667777777777777655555666777777777777776555555666677777777777776654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=2.9e-13 Score=159.28 Aligned_cols=170 Identities=25% Similarity=0.356 Sum_probs=146.5
Q ss_pred CCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 3 SMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
.+++|+.|+++++.+..++ .++.+++|++|+|++|. +..+|. +..+++|++|+|++|. +..+| .++.+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 4678999999999999987 68999999999999965 566666 8899999999999974 55555 789999999999
Q ss_pred ccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC
Q 048786 83 LDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 83 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
+++|.+..++ .+..+++|+.|++++|.. ..+ ..+..+++|+.|++++|......| +..+++|+.|++++|.+..+
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCcc-CCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 9999999874 588999999999999864 445 568999999999999986655444 89999999999999999987
Q ss_pred CchhhccCCccEEEccCCCCC
Q 048786 163 TSSIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 163 ~~~l~~l~~L~~L~L~~~~~~ 183 (862)
+ .+..+++|+.|++++|...
T Consensus 191 ~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G-GGTTCTTCSEEECCSEEEE
T ss_pred h-HHccCCCCCEEEccCCcCc
Confidence 4 5888999999999998743
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=7.4e-13 Score=146.49 Aligned_cols=171 Identities=22% Similarity=0.208 Sum_probs=138.7
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcccc-ccC-CCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV-TIS-SLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG 85 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 85 (862)
+++++++++++.+|..+. ..+++|+|++|. ++.++. .+. .+++|++|+|++|......|..+.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 688999999999998664 468999999965 555554 455 899999999999765555556799999999999999
Q ss_pred ccCcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCccc----CCCCcccEEEccCCcCc
Q 048786 86 TSIAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTL----GKVESLEELDVSGTAIR 160 (862)
Q Consensus 86 ~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l----~~l~~L~~L~l~~~~~~ 160 (862)
|.+..++. .+..+++|+.|++++|......|..+..+++|++|++++|.. ..+|..+ ..+++|+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99998876 488999999999999987666678899999999999999754 4455543 67999999999999999
Q ss_pred CCCc-hhhccCC--ccEEEccCCCC
Q 048786 161 RPTS-SIFLMKN--LRSLYFSGCNE 182 (862)
Q Consensus 161 ~~~~-~l~~l~~--L~~L~L~~~~~ 182 (862)
.++. .+..++. ++.|++.+|..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 8874 5666776 48899998874
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=1.6e-13 Score=144.81 Aligned_cols=167 Identities=20% Similarity=0.308 Sum_probs=140.1
Q ss_pred CCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEc
Q 048786 4 MKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYL 83 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 83 (862)
+.+++.+++.++.+++++ .+..+++|++|++++| .++.+| .+..+++|++|++++| .++.+|. ++++++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 345666778888898888 6889999999999996 577787 5888999999999997 4566666 899999999999
Q ss_pred cCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCC
Q 048786 84 DGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPT 163 (862)
Q Consensus 84 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 163 (862)
++|.+..+|.... ++|+.|++++|. +..++ .+..+++|++|++++|.. ..++ .++.+++|+.|++++|.+...
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcCcch-
Confidence 9999999886544 999999999986 45555 488999999999999764 4454 688999999999999999988
Q ss_pred chhhccCCccEEEccCCCC
Q 048786 164 SSIFLMKNLRSLYFSGCNE 182 (862)
Q Consensus 164 ~~l~~l~~L~~L~L~~~~~ 182 (862)
..+..+++|+.|++++|..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCcc
Confidence 6788899999999998764
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.5e-15 Score=177.66 Aligned_cols=177 Identities=20% Similarity=0.197 Sum_probs=144.0
Q ss_pred CCCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCC-------------CCCccccccCCCCCCCEEE-eeCCCCCCc
Q 048786 2 ASMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCK-------------NLSSLPVTISSLKCLRTLE-LSGCSKLKK 67 (862)
Q Consensus 2 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~-------------~l~~lp~~l~~l~~L~~L~-L~~c~~l~~ 67 (862)
...++|+.|+|++|.++.+|+.++++++|+.|++++|. .....|..++.+++|+.|+ ++.+ .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 45788999999999999999999999999999986643 3455667778888888888 4432 2222
Q ss_pred cch------hhcC--CCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCC
Q 048786 68 FPQ------IVAS--MEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENV 139 (862)
Q Consensus 68 lp~------~i~~--l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l 139 (862)
++. .+.. ...|++|++++|.+..+|. ++.+++|+.|++++|. +..+|..++.+++|+.|++++|... .+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE-NV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCC-CC
Confidence 221 1111 1258999999999999987 9999999999999986 4589999999999999999997654 47
Q ss_pred CcccCCCCcccEEEccCCcCcCC--CchhhccCCccEEEccCCCCC
Q 048786 140 PDTLGKVESLEELDVSGTAIRRP--TSSIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 140 p~~l~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~L~~~~~~ 183 (862)
| .++.+++|+.|++++|.++.+ |..+..+++|+.|++++|...
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 7 899999999999999999988 889999999999999998754
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=7.8e-13 Score=139.45 Aligned_cols=151 Identities=23% Similarity=0.356 Sum_probs=129.8
Q ss_pred CCCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEE
Q 048786 3 SMKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLY 82 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 82 (862)
++++|++|++++++++.++ .++.+++|++|++++| .++.+|. +..+++|++|++++| .++.+|.... .+|++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEE
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEE
Confidence 4689999999999999998 7899999999999996 5667777 999999999999997 4556665444 8999999
Q ss_pred ccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC
Q 048786 83 LDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 83 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
+++|.+..++ .++.+++|+.|++++|+ ++.++ .+..+++|++|++++|..... ..+..+++|+.|++++|.+...
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999886 58999999999999987 55565 588999999999999765544 6788999999999999988766
Q ss_pred Cc
Q 048786 163 TS 164 (862)
Q Consensus 163 ~~ 164 (862)
|.
T Consensus 188 ~~ 189 (263)
T 1xeu_A 188 PV 189 (263)
T ss_dssp CE
T ss_pred cc
Confidence 54
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=2.5e-15 Score=175.86 Aligned_cols=195 Identities=17% Similarity=0.135 Sum_probs=124.7
Q ss_pred CCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCcc--------------CcccCccCCCCCCCCEEE-ccCCCCcc
Q 048786 49 SSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTS--------------IAEVPSSIELLPGLELLY-LNECKNLV 113 (862)
Q Consensus 49 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~--------------i~~lp~~i~~L~~L~~L~-L~~~~~l~ 113 (862)
...++|+.|+|++| .++.+|..++++++|+.|+++++. ....|..++.+++|+.|+ ++.+. +.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD 423 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc
Confidence 33455555555553 334555555555555555554332 113344455555565555 33221 11
Q ss_pred cccc------cccC--CCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCC
Q 048786 114 RLPS------SING--LKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPA 185 (862)
Q Consensus 114 ~lp~------~l~~--l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 185 (862)
.++. .+.. ...|+.|++++|. +..+|. ++.+++|+.|++++|.++.+|..+..+++|+.|++++|....
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-
Confidence 1111 0110 1248888888864 445676 888888888888888888888888888888888888876432
Q ss_pred ccccccccccccccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCcccccccc----
Q 048786 186 SASWHLHLPFNLLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPASIS---- 261 (862)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~---- 261 (862)
+|.+..+++|+.|++++|.++....|..+..+++|+.|+|++|.++.+|+.+.
T Consensus 501 -----------------------lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 501 -----------------------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp -----------------------CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred -----------------------CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 34567788899999999888752228888889999999999998887776443
Q ss_pred CCCCCCEEee
Q 048786 262 GLLNLEELEL 271 (862)
Q Consensus 262 ~l~~L~~L~L 271 (862)
.+++|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 3777877753
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=3.7e-12 Score=130.43 Aligned_cols=148 Identities=18% Similarity=0.266 Sum_probs=126.5
Q ss_pred cEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCccc-CccCCCCCCCCEEEccCC
Q 048786 31 ELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEV-PSSIELLPGLELLYLNEC 109 (862)
Q Consensus 31 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 109 (862)
+.+++++ ..++.+|..+. ++|++|++++|......+..+.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5677777 56888888665 7999999999765544455899999999999999999987 677999999999999998
Q ss_pred CCcccccc-cccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc-hhhccCCccEEEccCCCC
Q 048786 110 KNLVRLPS-SINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS-SIFLMKNLRSLYFSGCNE 182 (862)
Q Consensus 110 ~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~ 182 (862)
... .+|. .+..+++|++|++++|......+..++.+++|+.|++++|.++.++. .+..+++|+.|++.+|..
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 754 5554 46889999999999988777778889999999999999999998875 478899999999999874
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=4.9e-12 Score=129.49 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=128.6
Q ss_pred cEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccc-hhhcCCCCCcEEEccCccCcccCc-cCCCCCCCCEEEccC
Q 048786 31 ELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFP-QIVASMEDLSKLYLDGTSIAEVPS-SIELLPGLELLYLNE 108 (862)
Q Consensus 31 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~ 108 (862)
+.+++++ ..++.+|..+. ..+++|++++|......| ..++++++|++|++++|.+..++. .++.+++|++|++++
T Consensus 14 ~~l~~s~-n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCC-CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5889988 45778888664 567999999975444334 458999999999999999998876 699999999999999
Q ss_pred CCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCC-CchhhccCCccEEEccCCCCC
Q 048786 109 CKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRP-TSSIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 109 ~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~ 183 (862)
|......+..+..+++|++|++++|......|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 987666666799999999999999887777788899999999999999999987 678889999999999998754
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=5.4e-12 Score=130.06 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=128.9
Q ss_pred CcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCcc-CCCCCCCCEEEccC
Q 048786 30 LELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLNE 108 (862)
Q Consensus 30 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 108 (862)
.+.++.++ ..++.+|..+. ++|++|+|++|......|..++++++|++|++++|.+..+|.. ++.+++|+.|++++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45688876 56888998664 8999999999877776788999999999999999999999865 68999999999999
Q ss_pred CCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc-hhhccCCccEEEccCCCCC
Q 048786 109 CKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS-SIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 109 ~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~ 183 (862)
|......+..+..+++|++|++++|. +..+|..+..+++|+.|++++|.+..++. .+..+++|+.|++.+|...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 87544444557899999999999965 55889999999999999999999998874 5778999999999998754
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=2.2e-12 Score=125.98 Aligned_cols=127 Identities=22% Similarity=0.304 Sum_probs=80.9
Q ss_pred CCCCcEEEeecCCCc--ccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEE
Q 048786 4 MKDLSDLYLDGTSIT--EVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKL 81 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 81 (862)
.++|++|+++++.+. .+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.....+|..++++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 456777777777776 677666777777777777754 4444 446667777777777765544466666667777777
Q ss_pred EccCccCcccC--ccCCCCCCCCEEEccCCCCcccccc----cccCCCCCCEEEecCC
Q 048786 82 YLDGTSIAEVP--SSIELLPGLELLYLNECKNLVRLPS----SINGLKSLKTLNLSGC 133 (862)
Q Consensus 82 ~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~L~~c 133 (862)
++++|.+..+| ..++.+++|+.|++++|.. ..+|. .+..+++|++|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCC
Confidence 77777776655 4566666666666666542 33332 4555555555555554
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=4.6e-12 Score=140.08 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=72.0
Q ss_pred cEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhc-CCCCCcEEEccCccCcccCc-cCCCCCCCCEEEccC
Q 048786 31 ELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVA-SMEDLSKLYLDGTSIAEVPS-SIELLPGLELLYLNE 108 (862)
Q Consensus 31 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~ 108 (862)
+.+++++ ..++.+|..+. ..+++|+|++|......+..+. ++++|++|++++|.+..++. .+..+++|++|++++
T Consensus 21 ~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCS-SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCC-CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566665 34566665443 3466666666543333333344 66666666666666666553 356666666666666
Q ss_pred CCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc
Q 048786 109 CKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS 164 (862)
Q Consensus 109 ~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 164 (862)
|+.....+..+..+++|++|++++|......+..+..+++|+.|++++|.++.+|.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 55333233345556666666666554444444455555555555555555554443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=2.9e-12 Score=122.44 Aligned_cols=126 Identities=23% Similarity=0.339 Sum_probs=94.7
Q ss_pred CCCCCcEEEeecCCCc--ccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcE
Q 048786 3 SMKDLSDLYLDGTSIT--EVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSK 80 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 80 (862)
..++|++|+++++.+. .+|..++.+++|++|++++|. ++.+ ..+..+++|++|++++|.....+|..++++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467888888888887 788878888888888888864 4555 55778888888888887655557887878888888
Q ss_pred EEccCccCcccC--ccCCCCCCCCEEEccCCCCcccccc----cccCCCCCCEEEec
Q 048786 81 LYLDGTSIAEVP--SSIELLPGLELLYLNECKNLVRLPS----SINGLKSLKTLNLS 131 (862)
Q Consensus 81 L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~L~ 131 (862)
|++++|.+..+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 888888888765 667778888888888775 344443 56667777777654
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=1.1e-12 Score=158.30 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCCcEEEeecCCCcccCccccCCCCCcEEEEeC----CCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcE
Q 048786 5 KDLSDLYLDGTSITEVPSSIELLTGLELLTLKG----CKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSK 80 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~----c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 80 (862)
+.++.|+|.++.+...+..+....+|+.+.+.. +..+...|..+..+.+|++|+|++|. +..+|..+.++++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCE
Confidence 345667777766666665554444444444332 12233445556666666666666643 3456666666666666
Q ss_pred EEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 81 LYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 81 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
|+|++|.+..+|..++.+++|++|+|++|.. ..+|..++.+++|++|++++|. ++.+|..++.+++|+.|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 6666666666666666666666666666653 3566666666666666666653 3455666666666666666666665
Q ss_pred C
Q 048786 161 R 161 (862)
Q Consensus 161 ~ 161 (862)
.
T Consensus 330 ~ 330 (727)
T 4b8c_D 330 K 330 (727)
T ss_dssp S
T ss_pred C
Confidence 4
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.4e-11 Score=120.32 Aligned_cols=129 Identities=23% Similarity=0.257 Sum_probs=66.1
Q ss_pred CCCCcEEEEeCCCCC-CccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEE
Q 048786 27 LTGLELLTLKGCKNL-SSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLY 105 (862)
Q Consensus 27 L~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 105 (862)
.++|++|++++|... ..+|..+..+++|++|++++|. ++.+ ..++.+++|++|++++|.+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~--------------- 85 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFG--------------- 85 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCch---------------
Confidence 455666666665432 2555555556666666666653 3333 444555555555555555544
Q ss_pred ccCCCCcccccccccCCCCCCEEEecCCCCCCCCC--cccCCCCcccEEEccCCcCcCCCc----hhhccCCccEEEccC
Q 048786 106 LNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVP--DTLGKVESLEELDVSGTAIRRPTS----SIFLMKNLRSLYFSG 179 (862)
Q Consensus 106 L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~L~~ 179 (862)
.+|..+..+++|++|++++|.. ..++ ..++.+++|+.|++++|.+...+. .+..+++|+.|++.+
T Consensus 86 --------~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 86 --------GLDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp --------CCCHHHHHCTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred --------HHHHHHhhCCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 2333333444455555544422 2222 345555555555555555555544 455556666666655
Q ss_pred CC
Q 048786 180 CN 181 (862)
Q Consensus 180 ~~ 181 (862)
|.
T Consensus 157 n~ 158 (168)
T 2ell_A 157 RE 158 (168)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=3.2e-11 Score=120.62 Aligned_cols=123 Identities=24% Similarity=0.301 Sum_probs=72.4
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccc--cCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC
Q 048786 8 SDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVT--ISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG 85 (862)
Q Consensus 8 r~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~--l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 85 (862)
+++++++++++++|..+.. +|++|++++|. ++.++.. +..+++|++|+|++|......|..++++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5677777777777765543 67777777753 4444432 56666777777776654444466666666666666666
Q ss_pred ccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCC
Q 048786 86 TSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGC 133 (862)
Q Consensus 86 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c 133 (862)
|.+..++.. ++.+++|++|++++|+.....|..+..+++|++|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 666655443 555555555555555544444444444445555544444
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.4e-11 Score=117.73 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=88.5
Q ss_pred CCCCCEEEeeCCCCC-CccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEE
Q 048786 51 LKCLRTLELSGCSKL-KKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLN 129 (862)
Q Consensus 51 l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 129 (862)
.++|++|++++|... ..+|..++.+++|++|++++|.+..+ ..++.+++|++|++++|.....+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 456666666665433 35666666677777777777777666 5567777777777777765554666666677888888
Q ss_pred ecCCCCCCC-CCcccCCCCcccEEEccCCcCcCCCc----hhhccCCccEEEcc
Q 048786 130 LSGCCKLEN-VPDTLGKVESLEELDVSGTAIRRPTS----SIFLMKNLRSLYFS 178 (862)
Q Consensus 130 L~~c~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~L~ 178 (862)
+++|..... .+..++.+++|+.|++++|.++..+. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 877654331 23667788888888888888887765 57778888888775
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=1e-10 Score=117.05 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=54.5
Q ss_pred CCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEec
Q 048786 53 CLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLS 131 (862)
Q Consensus 53 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 131 (862)
+|++|++++| .++.+|..+.++++|++|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444444443 233444444455555555555555554442 24555555555555554333333345556666666666
Q ss_pred CCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 132 GCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 132 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
+|......+..+..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 64433322334566667777777776654
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=4.4e-12 Score=152.92 Aligned_cols=153 Identities=18% Similarity=0.106 Sum_probs=90.3
Q ss_pred CCCcEEEEeCCCCCCccccccCCCCCCCEEEeeC----CCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCE
Q 048786 28 TGLELLTLKGCKNLSSLPVTISSLKCLRTLELSG----CSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLEL 103 (862)
Q Consensus 28 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~----c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 103 (862)
++++.|+|.++. +...|..+.....|+.+.+.+ +..+...|..+..+.+|+.|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~-~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANG-KDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCC-CCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 557777777643 444454444444444444433 123345677788888899999988888888888888888888
Q ss_pred EEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCC
Q 048786 104 LYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 104 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 183 (862)
|+|++|.. ..+|..++++++|++|+|++|... .+|..++.+++|+.|++++|.+..+|..+..+++|+.|+|++|...
T Consensus 252 L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcC-cccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 88888764 478888888888888888887644 7788888888888888888888888888888888888888887754
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=2.5e-11 Score=119.51 Aligned_cols=104 Identities=21% Similarity=0.291 Sum_probs=47.4
Q ss_pred CCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccC-CCCCCCCEEEccCCCCcccccc--cccCCCCCCEEE
Q 048786 53 CLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSI-ELLPGLELLYLNECKNLVRLPS--SINGLKSLKTLN 129 (862)
Q Consensus 53 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~ 129 (862)
+|++|++++|. ++.+ ..++++++|++|++++|.+..+|..+ +.+++|++|++++|.. ..+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEE
Confidence 44444444432 2222 33444444444444444444444332 4444555555544432 33333 344555555555
Q ss_pred ecCCCCCCCCCcc----cCCCCcccEEEccCCcCc
Q 048786 130 LSGCCKLENVPDT----LGKVESLEELDVSGTAIR 160 (862)
Q Consensus 130 L~~c~~l~~lp~~----l~~l~~L~~L~l~~~~~~ 160 (862)
+++|... .+|.. ++.+++|+.|++++|...
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5554322 33332 455556666666555443
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=1.6e-10 Score=115.49 Aligned_cols=126 Identities=23% Similarity=0.298 Sum_probs=92.3
Q ss_pred cEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccch--hhcCCCCCcEEEccCccCccc-CccCCCCCCCCEEEcc
Q 048786 31 ELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQ--IVASMEDLSKLYLDGTSIAEV-PSSIELLPGLELLYLN 107 (862)
Q Consensus 31 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~--~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~ 107 (862)
+++++++ ..++.+|..+.. +|++|++++|. ++.++. .++++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 6778877 456777876643 88888888864 444443 377888888888888888876 5567888888888888
Q ss_pred CCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCc
Q 048786 108 ECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 108 ~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
+|......+..+..+++|++|++++|......|..++.+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 87755555556777888888888887666666777777777777777777765
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=4.6e-10 Score=110.41 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=63.6
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccC
Q 048786 7 LSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDG 85 (862)
Q Consensus 7 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 85 (862)
.+.+++++++++.+|..+ .++|++|++++|. ++.+|. .+..+++|++|++++|......+..++++++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345666666666666433 2466666666643 333332 345555555555555432222222345555555555555
Q ss_pred ccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcC
Q 048786 86 TSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 86 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 161 (862)
|.+..+|.. .+..+++|++|++++|......+..+..+++|+.|++++|.+..
T Consensus 86 N~l~~~~~~-----------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNG-----------------------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTT-----------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHH-----------------------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 555544433 23445555555555543322222223555666666666665553
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=4.7e-10 Score=112.16 Aligned_cols=126 Identities=24% Similarity=0.244 Sum_probs=109.0
Q ss_pred CEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCC
Q 048786 55 RTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCC 134 (862)
Q Consensus 55 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~ 134 (862)
++++++++ .++.+|..+. .+|++|++++|.+..+|..+..+++|+.|++++|......+..+.++++|++|++++|.
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57787774 5677887654 58999999999999999999999999999999988666566779999999999999987
Q ss_pred CCCCCCcccCCCCcccEEEccCCcCcCCCc-hhhccCCccEEEccCCCCC
Q 048786 135 KLENVPDTLGKVESLEELDVSGTAIRRPTS-SIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 135 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~ 183 (862)
.....+..++.+++|+.|++++|.++.++. .+..+++|+.|++++|...
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 766666789999999999999999998876 4778999999999998743
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.07 E-value=2.7e-10 Score=112.07 Aligned_cols=131 Identities=20% Similarity=0.287 Sum_probs=108.4
Q ss_pred cCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCccCCCCCCCCEEEccCCCCccccccc-ccCCCCCC
Q 048786 48 ISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLPSS-INGLKSLK 126 (862)
Q Consensus 48 l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~l~~L~ 126 (862)
+..+.+|++|++++| .++.+|......++|++|++++|.+..+ ..++.+++|++|++++|.. ..+|.. +..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCC
Confidence 455778888888886 4455665444444999999999999988 6799999999999999874 556654 48999999
Q ss_pred EEEecCCCCCCCCCc--ccCCCCcccEEEccCCcCcCCCch----hhccCCccEEEccCCCC
Q 048786 127 TLNLSGCCKLENVPD--TLGKVESLEELDVSGTAIRRPTSS----IFLMKNLRSLYFSGCNE 182 (862)
Q Consensus 127 ~L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~L~~~~~ 182 (862)
+|++++|.. ..+|. .++.+++|+.|++++|.+...|.. +..+++|+.|++++|..
T Consensus 92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999754 66776 788999999999999999988875 88999999999998763
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=1.7e-09 Score=106.24 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=91.0
Q ss_pred CCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCcc-CCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecC
Q 048786 54 LRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSG 132 (862)
Q Consensus 54 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 132 (862)
.+.++++++ .++.+|..+. ++|++|++++|.+..+|.. ++.+++|++|++++|......+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345555552 3445554332 4667777777777666654 46777777777777654333334467888888888888
Q ss_pred CCCCCCCCcccCCCCcccEEEccCCcCcCCCchh-hccCCccEEEccCCCCCCC
Q 048786 133 CCKLENVPDTLGKVESLEELDVSGTAIRRPTSSI-FLMKNLRSLYFSGCNEPPA 185 (862)
Q Consensus 133 c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~ 185 (862)
|......+..++.+++|+.|++++|.++.++... ..+++|+.|++++|.....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 7655555556789999999999999999888764 7799999999999986543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=6.4e-12 Score=126.31 Aligned_cols=99 Identities=24% Similarity=0.409 Sum_probs=48.5
Q ss_pred CcEEEeecC--CCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEcc
Q 048786 7 LSDLYLDGT--SITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLD 84 (862)
Q Consensus 7 Lr~L~L~~~--~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~ 84 (862)
|+.+.+.+. .++.+|..++.+++|++|++++|. ++.+| .+..+++|++|++++|. ++.+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence 344444442 344455455555555555555532 33344 45555555555555542 33445444444555555555
Q ss_pred CccCcccCccCCCCCCCCEEEccCC
Q 048786 85 GTSIAEVPSSIELLPGLELLYLNEC 109 (862)
Q Consensus 85 ~~~i~~lp~~i~~L~~L~~L~L~~~ 109 (862)
+|.+..+| .++.+++|+.|++++|
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEE
T ss_pred CCcCCcCC-ccccCCCCCEEECCCC
Confidence 55555444 3444444444444444
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.6e-09 Score=117.93 Aligned_cols=235 Identities=12% Similarity=0.091 Sum_probs=144.5
Q ss_pred CCCCcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCcccc-ccCC--------CCCCCEEEeeCCCCCCccc-hhhc
Q 048786 4 MKDLSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPV-TISS--------LKCLRTLELSGCSKLKKFP-QIVA 73 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~--------l~~L~~L~L~~c~~l~~lp-~~i~ 73 (862)
+++|++|+|++|++..+...-+.++.++.+.+..+ .+|+ .|.+ +++|+.|+|.+ .++.++ ..|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 67899999999988822211222333444444442 2332 3555 77788887776 344443 4577
Q ss_pred CCCCCcEEEccCccCcccCcc-CCCCCCCCEEEccCCC-----------------Ccc---------ccccc----ccCC
Q 048786 74 SMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLNECK-----------------NLV---------RLPSS----INGL 122 (862)
Q Consensus 74 ~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~-----------------~l~---------~lp~~----l~~l 122 (862)
++.+|+.+++.++.+..++.. +..+.++..+...... .+. .++.. -...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 778888888877777666543 5555555555433310 000 01100 0123
Q ss_pred CCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCc-hhhccCCccEEEccCCCCCCCccccccccccccccCC
Q 048786 123 KSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTS-SIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKS 201 (862)
Q Consensus 123 ~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~ 201 (862)
.++..+.+.+.-....+......+++|+.+++.+|.++.++. .+..+.+|+.+++.++-
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni-------------------- 261 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL-------------------- 261 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC--------------------
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc--------------------
Confidence 445566655531111111111236889999999998888765 56778899999998751
Q ss_pred CCCccccccC--cCCCCCcc-EEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccc-cccCCCCCCEEee
Q 048786 202 SCPVALMLPS--LTGVCSLT-KLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPA-SISGLLNLEELEL 271 (862)
Q Consensus 202 ~~~~~~~lp~--l~~l~~L~-~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 271 (862)
..++. +..+++|+ .+++.+ .+.. --+..+..+++|+.+++.+|++..++. .+.++++|+.++.
T Consensus 262 -----~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 262 -----KTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -----CEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -----ceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 11222 77888999 999988 5542 124678889999999999999998876 6778888888763
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=3.9e-11 Score=120.56 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=81.8
Q ss_pred CchhchhhhhccccCcEEecCCCccCcccCcCccccCcccEEecCCCCCCccCcccccCCCCccEEEeeCccccccCchh
Q 048786 669 DIRELSLAIELLFGLVQLTLNGCKNLERLPRTISALKYLSTLNLSGLSKFREFPEITSSRDQLLEIHLEGTAIRGLPASI 748 (862)
Q Consensus 669 ~~~~lp~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~~~~~~lp~~i 748 (862)
.++++|..+..+++|++|+++++ .+..+| .+.++++|++|++++| .++.+|.....+++|++|+++++.+..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 55666667777777777777765 456666 6677777777777776 45677776666677777777777777776 57
Q ss_pred hccCcCcEEecCCCcccccCCc--cCCCCCCcCEEccCCCC
Q 048786 749 ELLSGNILSNLKDCKNLKSLPS--TINGLRSLRMMYPSGCS 787 (862)
Q Consensus 749 ~~L~~L~~L~l~~c~~L~~LP~--~i~~L~sL~~L~i~~C~ 787 (862)
+.+++|++|+++++. +..+|. .+..+++|++|++++|+
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 777777777777776 666664 56777777777777775
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=4.7e-09 Score=102.48 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=54.4
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 7 LSDLYLDGTSITEVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 7 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
.+++++++++++.+|..+. ++|++|+|++|......|..+..+++|++|+|++|......+..++++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3566666666666665542 56666666664433333444555666666666664332222223455555555555555
Q ss_pred cCcccCcc-CCCCCCCCEEEccCCC
Q 048786 87 SIAEVPSS-IELLPGLELLYLNECK 110 (862)
Q Consensus 87 ~i~~lp~~-i~~L~~L~~L~L~~~~ 110 (862)
.+..+|.. ++.+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 55555443 4455555555555543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=5.2e-09 Score=102.63 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=38.9
Q ss_pred CCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCcccCcc-CCCCCCCCEEEccCCCCcccccc-cccCCCCCCEEE
Q 048786 52 KCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPS-SINGLKSLKTLN 129 (862)
Q Consensus 52 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~ 129 (862)
++|++|+|++|......|..++++++|++|++++|.+..+|.. ++.+++|++|++++|.. ..+|. .+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEE
Confidence 4444444444433333344444555555555555555555443 34555555555555432 23332 255555555555
Q ss_pred ecCCC
Q 048786 130 LSGCC 134 (862)
Q Consensus 130 L~~c~ 134 (862)
+++|.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 55543
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=8e-07 Score=99.08 Aligned_cols=235 Identities=14% Similarity=0.250 Sum_probs=154.6
Q ss_pred CCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccc-cCCCCCCCEEEeeCCCCCCccc-hhhcCCCCCcEE
Q 048786 5 KDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVT-ISSLKCLRTLELSGCSKLKKFP-QIVASMEDLSKL 81 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L 81 (862)
..++.+.+.. +++.++. .|.+. +|+.+.+..+ ++.++.. |.+ .+|+.+.+.. .++.++ ..|.++.+|+.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCee
Confidence 3444444433 3555543 45554 7888888753 6666653 554 4789988886 444444 578888999999
Q ss_pred EccCccCcccCccCCCCCCCCEEEccCCCCccccc-ccccCCCCCCEEEecCCCCCCCCCc-ccCCCCcccEEEccCCcC
Q 048786 82 YLDGTSIAEVPSSIELLPGLELLYLNECKNLVRLP-SSINGLKSLKTLNLSGCCKLENVPD-TLGKVESLEELDVSGTAI 159 (862)
Q Consensus 82 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~ 159 (862)
++.++.+..++...-...+|+.+.+.++ +..++ ..+.++++|+.+++..+ +..++. .+.. .+|+.+.+.++ +
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-V 259 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-c
Confidence 9998889888877555788999988753 45544 45778889999988763 344433 3444 78888888543 4
Q ss_pred cCC-CchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC--cCCCCCccEEEccCCCCCCCCCCcc
Q 048786 160 RRP-TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS--LTGVCSLTKLDLSDCGLGEAAIPSD 236 (862)
Q Consensus 160 ~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~--l~~l~~L~~L~Ls~~~l~~~~lp~~ 236 (862)
+.+ ...+..+++|+.+.+.++...... ...++. +..+++|+.+++.++ +.. --...
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~-------------------~~~I~~~aF~~c~~L~~l~l~~~-i~~-I~~~a 318 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDP-------------------EAMIHPYCLEGCPKLARFEIPES-IRI-LGQGL 318 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCT-------------------TCEECTTTTTTCTTCCEECCCTT-CCE-ECTTT
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCc-------------------ccEECHHHhhCCccCCeEEeCCc-eEE-Ehhhh
Confidence 444 456677888888888765432100 011222 777888888888743 432 12345
Q ss_pred cCCCCcccEEECcCCCCccccc-cccCCCCCCEEeeecCC
Q 048786 237 IDNLHSLKELYLNRNNFVTLPA-SISGLLNLEELELEDCK 275 (862)
Q Consensus 237 l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 275 (862)
+..+++|+.+.|.. +++.+.. .+.++ +|+.+.+.++.
T Consensus 319 F~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred hcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCC
Confidence 67788888888854 4666644 56677 88888888863
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=5.6e-07 Score=100.38 Aligned_cols=232 Identities=14% Similarity=0.179 Sum_probs=165.0
Q ss_pred CCCCCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccc-cccCCCCCCCEEEeeCCCCCCccchhhcCCCCC
Q 048786 1 MASMKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLP-VTISSLKCLRTLELSGCSKLKKFPQIVASMEDL 78 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L 78 (862)
|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .++.++ ..|.++.+|+.+++.++ .++.+|...-...+|
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGI 205 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCC
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeeccc
Confidence 3454 6899998665 777765 4555 4799999985 566665 45888999999999984 566676655457899
Q ss_pred cEEEccCccCcccCcc-CCCCCCCCEEEccCCCCcccccc-cccCCCCCCEEEecCCCCCCCC-CcccCCCCcccEEEcc
Q 048786 79 SKLYLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLPS-SINGLKSLKTLNLSGCCKLENV-PDTLGKVESLEELDVS 155 (862)
Q Consensus 79 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~l~ 155 (862)
+.+.+..+ +..++.. +..+++|+.+.+.++ ++.++. ++.+ .+|+.+.+.. .+..+ ...+..+++|+.+++.
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEE
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeC
Confidence 99999854 7777654 788999999999863 555554 3555 7899999954 34444 4568899999999998
Q ss_pred CCcCc-----C-CCchhhccCCccEEEccCCCCCCCccccccccccccccCCCCCccccccC--cCCCCCccEEEccCCC
Q 048786 156 GTAIR-----R-PTSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFNLLGKSSCPVALMLPS--LTGVCSLTKLDLSDCG 227 (862)
Q Consensus 156 ~~~~~-----~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lp~--l~~l~~L~~L~Ls~~~ 227 (862)
++... . -...+..+++|+.+.+.+.- ..++. +..+.+|+.+.|..+
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i-------------------------~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPESI-------------------------RILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCTTC-------------------------CEECTTTTTTCCSCCEEEECTT-
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCCce-------------------------EEEhhhhhcCCCCccEEEECcc-
Confidence 88765 2 34567789999999987421 11222 778899999999665
Q ss_pred CCCCCCCcccCCCCcccEEECcCCCCccccc-cccCCC-CCCEEeee
Q 048786 228 LGEAAIPSDIDNLHSLKELYLNRNNFVTLPA-SISGLL-NLEELELE 272 (862)
Q Consensus 228 l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~-~L~~L~L~ 272 (862)
+.. --...+..+ +|+.+.+.+|....++. .+..++ .++.|++.
T Consensus 334 l~~-I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 334 VTQ-INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CCE-ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred ccE-EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 432 124567778 99999999998776654 233332 34444443
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=5.8e-08 Score=95.05 Aligned_cols=106 Identities=20% Similarity=0.343 Sum_probs=67.2
Q ss_pred CEEEeeCCCCCCccchhhcCCCCCcEEEccCccCccc-CccCCCCCCCCEEEccCCCCccccccc-ccCCCCCCEEEecC
Q 048786 55 RTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEV-PSSIELLPGLELLYLNECKNLVRLPSS-INGLKSLKTLNLSG 132 (862)
Q Consensus 55 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~ 132 (862)
+.++++++ .++.+|..+. .+|++|++++|.+..+ |..++.+++|++|++++|+ +..+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 56777763 4566676554 6777777777777766 3456777777777777765 3444443 46677777777777
Q ss_pred CCCCCCCCcccCCCCcccEEEccCCcCcCCCc
Q 048786 133 CCKLENVPDTLGKVESLEELDVSGTAIRRPTS 164 (862)
Q Consensus 133 c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 164 (862)
|......+..++.+++|+.|++++|.+...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 54433222336667777777777776665443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=5.9e-08 Score=94.63 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCCEEEeeCCCCCCccchhhcCCCCCcEEEccCccCccc-CccCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEec
Q 048786 53 CLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGTSIAEV-PSSIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLS 131 (862)
Q Consensus 53 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 131 (862)
..++++++++ .++.+|..+. .+|++|++++|.+..+ |..++.+++|++|++++|+.....+..+..+++|++|+++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567777773 5566666553 6777777777777766 3446777777777777765433333345667777777777
Q ss_pred CCCCCCCCCcccCCCCcccEEEccCCcCcCC
Q 048786 132 GCCKLENVPDTLGKVESLEELDVSGTAIRRP 162 (862)
Q Consensus 132 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 162 (862)
+|......+..++.+++|+.|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7544433333466677777777777766533
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=4.6e-08 Score=106.32 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=117.1
Q ss_pred CCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeC-----------------CCCC
Q 048786 4 MKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSG-----------------CSKL 65 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~-----------------c~~l 65 (862)
+++|+.|+|.+ +++.+++ .|..+++|+.|++.++.....-+..|..+.++..+.+.. |..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78899999988 8888875 578899999999988554333334455554454444322 1111
Q ss_pred C---------ccchh----------------------------hcCCCCCcEEEccCccCcccCcc-CCCCCCCCEEEcc
Q 048786 66 K---------KFPQI----------------------------VASMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLN 107 (862)
Q Consensus 66 ~---------~lp~~----------------------------i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~ 107 (862)
+ .++.. ...+.+|+.+++++|.+..+|.. +..+.+|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 1 01110 11367899999998889888865 7888999999998
Q ss_pred CCCCccccc-ccccCCCCCC-EEEecCCCCCCCC-CcccCCCCcccEEEccCCcCcCCCc-hhhccCCccEEEc
Q 048786 108 ECKNLVRLP-SSINGLKSLK-TLNLSGCCKLENV-PDTLGKVESLEELDVSGTAIRRPTS-SIFLMKNLRSLYF 177 (862)
Q Consensus 108 ~~~~l~~lp-~~l~~l~~L~-~L~L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L 177 (862)
++ +..++ .+|.++.+|+ .+++.. .+..+ +..|..+++|+.+++.++.+..++. .+.++++|+.++.
T Consensus 259 ~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 75 55554 4588888998 999887 34444 4678888999999998888887754 6677888888763
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1.4e-07 Score=103.08 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=62.0
Q ss_pred EEEeecC-CCcccCccccCCCCCcEEEEeCCCCCCccc-cccCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEEEccCc
Q 048786 9 DLYLDGT-SITEVPSSIELLTGLELLTLKGCKNLSSLP-VTISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKLYLDGT 86 (862)
Q Consensus 9 ~L~L~~~-~i~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 86 (862)
.++++++ +++.+|. ++.+.+|++|+|++++.++.+| ..|..+++|++|+|++|......|..|+++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566665 6777777 7777777777777533445444 45666777777777776444444456667777777777777
Q ss_pred cCcccCccCCCCCCCCEEEccCCC
Q 048786 87 SIAEVPSSIELLPGLELLYLNECK 110 (862)
Q Consensus 87 ~i~~lp~~i~~L~~L~~L~L~~~~ 110 (862)
.+..+|..+.....|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 766666553332236666655544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=1.5e-08 Score=111.92 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCCCcEEEEeCCCCCCc----cccccC-CCCCCCEEEeeCCCCCCccc-hhhcCCCCCcEEEccCccCccc-----CccC
Q 048786 27 LTGLELLTLKGCKNLSS----LPVTIS-SLKCLRTLELSGCSKLKKFP-QIVASMEDLSKLYLDGTSIAEV-----PSSI 95 (862)
Q Consensus 27 L~~L~~L~Ls~c~~l~~----lp~~l~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~i~~l-----p~~i 95 (862)
+++|++|++++|..... +...+. ...+|++|+|++|....... .....+.+|++|++++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 34566666666543221 111122 12566666666654322211 1222344667777777766532 1122
Q ss_pred -CCCCCCCEEEccCCCCcc----cccccccCCCCCCEEEecCCCCCC----CCCcccCCCCcccEEEccCCcCcC-----
Q 048786 96 -ELLPGLELLYLNECKNLV----RLPSSINGLKSLKTLNLSGCCKLE----NVPDTLGKVESLEELDVSGTAIRR----- 161 (862)
Q Consensus 96 -~~L~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~~~----- 161 (862)
...++|++|++++|.... .++..+...++|++|++++|.... .+...+...++|++|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 245677777777765322 244445667777777777765322 234455666778888888887763
Q ss_pred CCchhhccCCccEEEccCCCCC
Q 048786 162 PTSSIFLMKNLRSLYFSGCNEP 183 (862)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~~~~~ 183 (862)
+...+...++|++|++++|...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 3344556688888888888744
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=9.1e-07 Score=96.67 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=54.5
Q ss_pred EEEeeCCCCCCccchhhcCCCCCcEEEccC-ccCcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCC
Q 048786 56 TLELSGCSKLKKFPQIVASMEDLSKLYLDG-TSIAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGC 133 (862)
Q Consensus 56 ~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c 133 (862)
.++++++..++.+|. +..+.+|++|+|++ |.+..+|. .++.+++|+.|+|++|......|..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555335566666 66666666666664 66666653 3666666666666665543333444555666666666554
Q ss_pred CCCCCCCcc-cCCCCcccEEEccCCcCc
Q 048786 134 CKLENVPDT-LGKVESLEELDVSGTAIR 160 (862)
Q Consensus 134 ~~l~~lp~~-l~~l~~L~~L~l~~~~~~ 160 (862)
... .+|.. +..+. |+.|++.+|.+.
T Consensus 91 ~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 332 33322 22222 555555554443
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=6.7e-06 Score=91.52 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=29.9
Q ss_pred cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccc-cccCCCCCCEEeee
Q 048786 212 LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPA-SISGLLNLEELELE 272 (862)
Q Consensus 212 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~ 272 (862)
+..+.+|+.+.+..+ +.. --...+..+++|+.++|.+ .++.+.. .+.++.+|+.+.+.
T Consensus 293 F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccccccccc-cce-echhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEEC
Confidence 455566666666543 211 1123455666677666643 2444433 44555666666553
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.31 E-value=4.6e-08 Score=108.09 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=104.8
Q ss_pred CCCcEEEeecCCCccc-----Ccccc-CCCCCcEEEEeCCCCCCcccccc-CCCCCCCEEEeeCCCCCCccchh----h-
Q 048786 5 KDLSDLYLDGTSITEV-----PSSIE-LLTGLELLTLKGCKNLSSLPVTI-SSLKCLRTLELSGCSKLKKFPQI----V- 72 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~~l-----p~~i~-~L~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L~~c~~l~~lp~~----i- 72 (862)
++|++|+|++|.+... ...+. ...+|++|+|++|.....-...+ ..+.+|++|+|++|.....-... +
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5788899988888732 22233 23688999998875432222222 33568889999987543332222 2
Q ss_pred cCCCCCcEEEccCccCcc-----cCccCCCCCCCCEEEccCCCCcc----cccccccCCCCCCEEEecCCCCCC----CC
Q 048786 73 ASMEDLSKLYLDGTSIAE-----VPSSIELLPGLELLYLNECKNLV----RLPSSINGLKSLKTLNLSGCCKLE----NV 139 (862)
Q Consensus 73 ~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~c~~l~----~l 139 (862)
...++|++|++++|.+.. ++..+...++|++|++++|.... .++..+...++|++|++++|.... .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 346788999999888863 45556778889999998887432 234556677889999998876542 23
Q ss_pred CcccCCCCcccEEEccCCcCcC
Q 048786 140 PDTLGKVESLEELDVSGTAIRR 161 (862)
Q Consensus 140 p~~l~~l~~L~~L~l~~~~~~~ 161 (862)
...+...++|++|++++|.++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 3445567888999999888763
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=4.9e-07 Score=99.15 Aligned_cols=175 Identities=16% Similarity=0.179 Sum_probs=111.9
Q ss_pred CCCcEEEeecCCCc---------ccCccccCCCCCcEEEEeCCCC---------CCccccccCCCCCCCEEEeeCCCCCC
Q 048786 5 KDLSDLYLDGTSIT---------EVPSSIELLTGLELLTLKGCKN---------LSSLPVTISSLKCLRTLELSGCSKLK 66 (862)
Q Consensus 5 ~~Lr~L~L~~~~i~---------~lp~~i~~L~~L~~L~Ls~c~~---------l~~lp~~l~~l~~L~~L~L~~c~~l~ 66 (862)
..++.|.+...... .+..++..+++|+.|.+.+... ...++..+..+++|+.|+|++|..+.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 34667777643322 2344566788999999865321 11244445678899999999874443
Q ss_pred ccchhhcCCCCCcEEEccCccCccc-CccC--CCCCCCCEEEccCCCC-------cccccccc--cCCCCCCEEEecCCC
Q 048786 67 KFPQIVASMEDLSKLYLDGTSIAEV-PSSI--ELLPGLELLYLNECKN-------LVRLPSSI--NGLKSLKTLNLSGCC 134 (862)
Q Consensus 67 ~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i--~~L~~L~~L~L~~~~~-------l~~lp~~l--~~l~~L~~L~L~~c~ 134 (862)
++. +. +++|++|++..+.+..- ...+ ..+++|+.|+|+.+.. ...+...+ ..+++|++|++.+|.
T Consensus 187 -l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 -IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp -CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred -ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 343 33 78999999988776521 1222 3688999998853211 11222222 357899999998876
Q ss_pred CCCCCCccc---CCCCcccEEEccCCcCcC-----CCchhhccCCccEEEccCCCC
Q 048786 135 KLENVPDTL---GKVESLEELDVSGTAIRR-----PTSSIFLMKNLRSLYFSGCNE 182 (862)
Q Consensus 135 ~l~~lp~~l---~~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~ 182 (862)
.....+..+ ..+++|++|+++.|.+.. ++..+..+++|+.|++++|..
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 543222222 357899999999998774 344456789999999988753
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=6.6e-07 Score=98.10 Aligned_cols=155 Identities=16% Similarity=0.240 Sum_probs=107.0
Q ss_pred CCCCCcEEEeecCCCc----------ccCccccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhh
Q 048786 3 SMKDLSDLYLDGTSIT----------EVPSSIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIV 72 (862)
Q Consensus 3 ~l~~Lr~L~L~~~~i~----------~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i 72 (862)
++++|+.|.+.+...+ .+...+..+++|+.|+|++|..+ .++. +. +++|++|+|..|.........+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 3689999999764332 24455677899999999997443 3444 44 8999999999876443333344
Q ss_pred c--CCCCCcEEEccCc--c------CcccCccC--CCCCCCCEEEccCCCCcccccccc---cCCCCCCEEEecCCCCCC
Q 048786 73 A--SMEDLSKLYLDGT--S------IAEVPSSI--ELLPGLELLYLNECKNLVRLPSSI---NGLKSLKTLNLSGCCKLE 137 (862)
Q Consensus 73 ~--~l~~L~~L~L~~~--~------i~~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~L~~c~~l~ 137 (862)
. .+++|++|+|+.+ . +..+...+ +.+++|+.|++.+|......+..+ ..+++|++|+++.|....
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3 7899999998531 1 22232233 368999999999987653332222 357899999998865332
Q ss_pred ----CCCcccCCCCcccEEEccCCcCc
Q 048786 138 ----NVPDTLGKVESLEELDVSGTAIR 160 (862)
Q Consensus 138 ----~lp~~l~~l~~L~~L~l~~~~~~ 160 (862)
.++..+..+++|+.|++++|.++
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCC
Confidence 23445567899999999999876
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=3.4e-05 Score=85.71 Aligned_cols=278 Identities=13% Similarity=0.193 Sum_probs=148.6
Q ss_pred CCCCCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCCEEEeeCC------------C---
Q 048786 1 MASMKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPV-TISSLKCLRTLELSGC------------S--- 63 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~c------------~--- 63 (862)
|.++.+|+.+.|.. +++.+++ .|.++.+|+.+++.. .++.++. .+..+.+|+.+.+... .
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 56788999999964 5888864 688899999999975 2555543 3555666665554321 1
Q ss_pred -----CCCc-cchhhcCCCCCcEEEccCccCcccCcc-CCCCCCCCEEEccCCCCccccc-ccccCCCCCCEEEecCCCC
Q 048786 64 -----KLKK-FPQIVASMEDLSKLYLDGTSIAEVPSS-IELLPGLELLYLNECKNLVRLP-SSINGLKSLKTLNLSGCCK 135 (862)
Q Consensus 64 -----~l~~-lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~ 135 (862)
.... -...|.++.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ ++.++ ..+.++..|+.+.+.....
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce
Confidence 0111 1245677888999988654 3445443 667778887777543 22222 2344444455444332110
Q ss_pred --------------------CCCC-CcccCCCCcccEEEccCCcCcCCCchhhccCCccEEEccCCCCCCCccccccccc
Q 048786 136 --------------------LENV-PDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSLYFSGCNEPPASASWHLHLP 194 (862)
Q Consensus 136 --------------------l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 194 (862)
...+ ...+..+.+|+.+.+..+...-....+..+..++.+......... ........
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~ 298 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSS 298 (394)
T ss_dssp EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTT
T ss_pred EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccc
Confidence 1111 112334445555554443222222233334444444332211000 00000001
Q ss_pred cccccCCCCCccccccC--cCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccc-cccCCCCCCEEee
Q 048786 195 FNLLGKSSCPVALMLPS--LTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPA-SISGLLNLEELEL 271 (862)
Q Consensus 195 l~~l~~~~~~~~~~lp~--l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 271 (862)
+..+...+. ...++. +..+.+|+.++|.++ +.. --...+.++.+|+.+.+..+ ++.+.. .+.++++|+.+++
T Consensus 299 L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 299 LTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccccc--cceechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 111111111 112222 778899999999754 332 12456788999999999765 666654 6788899999988
Q ss_pred ecCCCCCcCCCCCCCCcEEeccCCCCceee
Q 048786 272 EDCKRLQSLPQIPPNLQFVRANGCSSLVTL 301 (862)
Q Consensus 272 ~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l 301 (862)
... ++.+. . ...+|++|+.+
T Consensus 374 p~~--~~~~~-------~-~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKR--LEQYR-------Y-DFEDTTKFKWI 393 (394)
T ss_dssp EGG--GGGGG-------G-GBCTTCEEEEE
T ss_pred CCC--CEEhh-------h-eecCCCCCcEE
Confidence 643 33321 1 35567777654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=0.00024 Score=78.75 Aligned_cols=238 Identities=12% Similarity=0.143 Sum_probs=105.2
Q ss_pred cccCCC-CCcEEEEeCCCCCCccc-cccCCCCCCCEEEeeCC--CCCCccc-hhhcCCCCCcEEEccCccCcccCcc-CC
Q 048786 23 SIELLT-GLELLTLKGCKNLSSLP-VTISSLKCLRTLELSGC--SKLKKFP-QIVASMEDLSKLYLDGTSIAEVPSS-IE 96 (862)
Q Consensus 23 ~i~~L~-~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~c--~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~ 96 (862)
.|.++. .|+.+.+.. .++.+. .+|.++.+|+.+.+..+ ..++.++ ..|.++.+|+.+.+..+ +..++.. +.
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 344443 466666653 244443 33566667777666543 2233332 34555566665555432 3444432 45
Q ss_pred CCCCCCEEEccCCCCccccc-ccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEEccCCcCcCCCchhhccCCccEE
Q 048786 97 LLPGLELLYLNECKNLVRLP-SSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELDVSGTAIRRPTSSIFLMKNLRSL 175 (862)
Q Consensus 97 ~L~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 175 (862)
.+.+|+.+.+... ...++ ..+..+.+|+.+.+... +..+....-...+|+.+.+..+...-....+..+.++...
T Consensus 135 ~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred hhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhcccccee
Confidence 5666666666532 22222 23455566666665432 2222222112345555555443322222333444444444
Q ss_pred EccCCCCCCCcccccccc--------------ccccccCCCCCcccccc--CcCCCCCccEEEccCCCCCCCCCCcccCC
Q 048786 176 YFSGCNEPPASASWHLHL--------------PFNLLGKSSCPVALMLP--SLTGVCSLTKLDLSDCGLGEAAIPSDIDN 239 (862)
Q Consensus 176 ~L~~~~~~~~~~~~~~~~--------------~l~~l~~~~~~~~~~lp--~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~ 239 (862)
.................. ....... ......+. ++..+..|+.+.+...-.. --...+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--p~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~~aF~~ 286 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI--PNGVARIETHAFDSCAYLASVKMPDSVVS--IGTGAFMN 286 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC--CTTEEEECTTTTTTCSSCCEEECCTTCCE--ECTTTTTT
T ss_pred cccccccccccceeecccccccccccccccccccceEEc--CCcceEcccceeeecccccEEecccccce--ecCccccc
Confidence 433222111000000000 0000000 00001111 1556667777776544321 11234556
Q ss_pred CCcccEEECcCCCCccccc-cccCCCCCCEEeee
Q 048786 240 LHSLKELYLNRNNFVTLPA-SISGLLNLEELELE 272 (862)
Q Consensus 240 l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~ 272 (862)
+++|+.+.+. +.++.++. .+.++.+|+.+.|.
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 6777777774 34555544 45556677776664
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.90 E-value=0.003 Score=69.36 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=48.1
Q ss_pred CCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccc-cCCCCCCCEEEeeCCCCCCccchhhcCCCCCcEE
Q 048786 4 MKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVT-ISSLKCLRTLELSGCSKLKKFPQIVASMEDLSKL 81 (862)
Q Consensus 4 l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 81 (862)
..+|+.+.+. .+++.+++ .|.++.+|+.+++.. .++.++.. +.++ +|+.+.+.. .++.++...-...+|+.+
T Consensus 45 ~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEE
T ss_pred ccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccc
Confidence 3467777775 34666654 678888999998864 36666543 4544 677776654 345554443333478888
Q ss_pred EccCc
Q 048786 82 YLDGT 86 (862)
Q Consensus 82 ~L~~~ 86 (862)
.+..+
T Consensus 119 ~lp~~ 123 (379)
T 4h09_A 119 EFPGA 123 (379)
T ss_dssp ECCTT
T ss_pred cCCCc
Confidence 77653
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.0014 Score=72.50 Aligned_cols=246 Identities=12% Similarity=0.156 Sum_probs=134.7
Q ss_pred CCCCC-CCcEEEeecCCCcccC-ccccCCCCCcEEEEeCC--CCCCcccc-ccCCCCCCCEEEeeCCCCCCccc-hhhcC
Q 048786 1 MASMK-DLSDLYLDGTSITEVP-SSIELLTGLELLTLKGC--KNLSSLPV-TISSLKCLRTLELSGCSKLKKFP-QIVAS 74 (862)
Q Consensus 1 ~~~l~-~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~Ls~c--~~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp-~~i~~ 74 (862)
|.+++ .|+.+.+.. +++.+. ..|.++.+|+.+.+..+ ..++.++. .|..+.+|+.+.+.. .++.++ ..+..
T Consensus 59 F~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTT
T ss_pred ccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhh
Confidence 34554 488888865 477775 46888999999999764 34555553 466677787776654 234433 45677
Q ss_pred CCCCcEEEccCccCcccCc-cCCCCCCCCEEEccCCCCcccccccccCCCCCCEEEecCCCCCCCCCcccCCCCcccEEE
Q 048786 75 MEDLSKLYLDGTSIAEVPS-SIELLPGLELLYLNECKNLVRLPSSINGLKSLKTLNLSGCCKLENVPDTLGKVESLEELD 153 (862)
Q Consensus 75 l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 153 (862)
+.+|+.+.+..+ +..++. .+..+.+|+.+.+.+. +..+....-...+|+.+.+.... ...-...+..+.+++...
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEE
T ss_pred hcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhhhccccceec
Confidence 888888888643 444443 3667778888877653 34443322233567777665421 111122344445555444
Q ss_pred ccCCcCcCC-------------------------------------CchhhccCCccEEEccCCCCCCCccccccccccc
Q 048786 154 VSGTAIRRP-------------------------------------TSSIFLMKNLRSLYFSGCNEPPASASWHLHLPFN 196 (862)
Q Consensus 154 l~~~~~~~~-------------------------------------~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~ 196 (862)
......... ...+..+.+|+.+.+.+....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~------------- 278 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS------------- 278 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-------------
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-------------
Confidence 332221111 112223344444443221100
Q ss_pred cccCCCCCccccccCcCCCCCccEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCccccc-cccCCCCCCEEeeecCC
Q 048786 197 LLGKSSCPVALMLPSLTGVCSLTKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPA-SISGLLNLEELELEDCK 275 (862)
Q Consensus 197 ~l~~~~~~~~~~lp~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 275 (862)
..--.+..+++|+.+.+... +.. --...+..+.+|+.+.|.++ ++.+.. .+.++.+|+.+.|..
T Consensus 279 ----------I~~~aF~~c~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-- 343 (394)
T 4gt6_A 279 ----------IGTGAFMNCPALQDIEFSSR-ITE-LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-- 343 (394)
T ss_dssp ----------ECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--
T ss_pred ----------ecCcccccccccccccCCCc-ccc-cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--
Confidence 00111566777888877533 221 11234667788888888643 555543 566777788877753
Q ss_pred CCCcCC
Q 048786 276 RLQSLP 281 (862)
Q Consensus 276 ~L~~lp 281 (862)
.++.++
T Consensus 344 sv~~I~ 349 (394)
T 4gt6_A 344 SVTKIP 349 (394)
T ss_dssp TCCBCC
T ss_pred ccCEEh
Confidence 255554
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.55 E-value=2.1e-05 Score=77.46 Aligned_cols=114 Identities=10% Similarity=0.091 Sum_probs=81.7
Q ss_pred CccccCCCCCcEEEEeCCCCCC-----ccccccCCCCCCCEEEeeCCCCCC----ccchhhcCCCCCcEEEccCccCcc-
Q 048786 21 PSSIELLTGLELLTLKGCKNLS-----SLPVTISSLKCLRTLELSGCSKLK----KFPQIVASMEDLSKLYLDGTSIAE- 90 (862)
Q Consensus 21 p~~i~~L~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~L~~~~i~~- 90 (862)
...+...++|++|+|++|..+. .+...+...++|++|+|++|..-. .+.+.+...++|++|+|++|.|..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 3455678889999998873343 244556677889999999876433 245566667889999999998873
Q ss_pred ----cCccCCCCCCCCEEEc--cCCCCccc----ccccccCCCCCCEEEecCCC
Q 048786 91 ----VPSSIELLPGLELLYL--NECKNLVR----LPSSINGLKSLKTLNLSGCC 134 (862)
Q Consensus 91 ----lp~~i~~L~~L~~L~L--~~~~~l~~----lp~~l~~l~~L~~L~L~~c~ 134 (862)
+...+...++|++|++ ++|..-.. +...+...++|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5666778888999999 66654322 34455667889999998865
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.37 E-value=0.00018 Score=69.49 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=22.6
Q ss_pred CCCEEEccCCCCcccc-cccccCCCCCCEEEecCCCCCCC
Q 048786 100 GLELLYLNECKNLVRL-PSSINGLKSLKTLNLSGCCKLEN 138 (862)
Q Consensus 100 ~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~c~~l~~ 138 (862)
+|++|++++|..+++- -..+..+++|++|++++|..++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 4666666666555441 12245567777777777765544
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.34 E-value=0.00016 Score=69.96 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=15.8
Q ss_pred CCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCC
Q 048786 29 GLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKL 65 (862)
Q Consensus 29 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l 65 (862)
+|+.||+++|.....--..+..+++|++|+|++|..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 4555555554421111122344555555555555433
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.28 E-value=9.8e-05 Score=72.62 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=32.1
Q ss_pred cCCCCCCCEEEeeCCCCCC-----ccchhhcCCCCCcEEEccCccCcc-----cCccCCCCCCCCEEEccCCC
Q 048786 48 ISSLKCLRTLELSGCSKLK-----KFPQIVASMEDLSKLYLDGTSIAE-----VPSSIELLPGLELLYLNECK 110 (862)
Q Consensus 48 l~~l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~ 110 (862)
+...++|++|+|++|..+. .+...+...++|++|+|++|.+.. +...+...++|++|++++|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4556667777776652222 234445555566666666665542 22233334445555555543
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.029 Score=61.36 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=61.7
Q ss_pred CCCCCCCcEEEeecCCCcccCc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCCEEEeeCCCCCCccchhhcCCCCCc
Q 048786 1 MASMKDLSDLYLDGTSITEVPS-SIELLTGLELLTLKGCKNLSSLPVTISSLKCLRTLELSGCSKLKKFPQIVASMEDLS 79 (862)
Q Consensus 1 ~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 79 (862)
|.++.+|+.+.|.. +++.+.+ .|.++ +|+.+.+.. .++.++.......+|+.+.+.+. +..+....-.-.+|+
T Consensus 65 F~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~~F~~~~l~ 138 (379)
T 4h09_A 65 FNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFEFPGA--TTEIGNYIFYNSSVK 138 (379)
T ss_dssp TTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCCCC
T ss_pred hhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccccCCCc--cccccccccccceee
Confidence 67889999999964 4777764 55665 688877754 46666655434458999998763 333333322223566
Q ss_pred EEEccCccCcccC-ccCCCCCCCCEEEccC
Q 048786 80 KLYLDGTSIAEVP-SSIELLPGLELLYLNE 108 (862)
Q Consensus 80 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~ 108 (862)
...+..+ +..+. ..+..+.+++...+..
T Consensus 139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp EEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred eeeccce-eeccccchhccccccccccccc
Confidence 6655432 33333 2355666777766554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.94 E-value=0.0005 Score=71.39 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=49.7
Q ss_pred cCCCCCcEEEEeCCCCCC--ccccccCCCCCCCEEEeeCCCCCCccchhhcCCC--CCcEEEccCccCcc-cCc------
Q 048786 25 ELLTGLELLTLKGCKNLS--SLPVTISSLKCLRTLELSGCSKLKKFPQIVASME--DLSKLYLDGTSIAE-VPS------ 93 (862)
Q Consensus 25 ~~L~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~~i~~l~--~L~~L~L~~~~i~~-lp~------ 93 (862)
.++++|+.|+|++|.... .+|..+..+++|++|+|++|.. +.+ ..+..+. +|++|++++|.+.. +|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457778888888764332 3444455678888888887543 333 2333344 78888888887763 331
Q ss_pred -cCCCCCCCCEEE
Q 048786 94 -SIELLPGLELLY 105 (862)
Q Consensus 94 -~i~~L~~L~~L~ 105 (862)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 256778888775
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.86 E-value=0.00063 Score=70.66 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=44.4
Q ss_pred cCCCCCcEEEccCccCcccC---ccCCCCCCCCEEEccCCCCcccccccccCCC--CCCEEEecCCCCCCCCCc------
Q 048786 73 ASMEDLSKLYLDGTSIAEVP---SSIELLPGLELLYLNECKNLVRLPSSINGLK--SLKTLNLSGCCKLENVPD------ 141 (862)
Q Consensus 73 ~~l~~L~~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~L~~c~~l~~lp~------ 141 (862)
.++++|+.|+|++|.+..++ ..++.+++|+.|+|++|... .+ ..+..++ +|++|++.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45566666666666665433 34456666677777665532 22 1123333 677777777665544432
Q ss_pred -ccCCCCcccEEE
Q 048786 142 -TLGKVESLEELD 153 (862)
Q Consensus 142 -~l~~l~~L~~L~ 153 (862)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245666777664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.42 E-value=0.085 Score=51.68 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=40.3
Q ss_pred hhhcCCCCCcEEEccCccCc-----ccCccCCCCCCCCEEEccCCCCccc----ccccccCCCCCCEEEecCCCC--CC-
Q 048786 70 QIVASMEDLSKLYLDGTSIA-----EVPSSIELLPGLELLYLNECKNLVR----LPSSINGLKSLKTLNLSGCCK--LE- 137 (862)
Q Consensus 70 ~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~c~~--l~- 137 (862)
+.+..-..|++|+|++|.|. .+.+.+..-+.|++|+|++|..-.. +...+..-+.|++|+++++.. ++
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 33444445555555555544 1222233344555555555443211 223344444566666654321 11
Q ss_pred ----CCCcccCCCCcccEEEccCCc
Q 048786 138 ----NVPDTLGKVESLEELDVSGTA 158 (862)
Q Consensus 138 ----~lp~~l~~l~~L~~L~l~~~~ 158 (862)
.+.+.+..-+.|+.|+++.+.
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 122334445566666665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.72 E-value=0.26 Score=44.81 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=38.5
Q ss_pred cEEEccCCCCCCCCCCcccCCCCcccEEECcCCCCcccccc-ccCCCCCCEEeeecCC
Q 048786 219 TKLDLSDCGLGEAAIPSDIDNLHSLKELYLNRNNFVTLPAS-ISGLLNLEELELEDCK 275 (862)
Q Consensus 219 ~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~ 275 (862)
..++-++.+++...+|..+. ++|+.|+|++|+++.+|.. +..+++|+.|+|.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36677777765223665433 5788888888888888764 4668888888888775
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.43 E-value=0.11 Score=50.92 Aligned_cols=106 Identities=14% Similarity=0.042 Sum_probs=49.7
Q ss_pred CCCCcEEEccCc-cCc-----ccCccCCCCCCCCEEEccCCCCccc----ccccccCCCCCCEEEecCCCCCC----CCC
Q 048786 75 MEDLSKLYLDGT-SIA-----EVPSSIELLPGLELLYLNECKNLVR----LPSSINGLKSLKTLNLSGCCKLE----NVP 140 (862)
Q Consensus 75 l~~L~~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~c~~l~----~lp 140 (862)
-+.|++|+|+++ .|. .+...+..-..|+.|+|++|..-.. +...+..-+.|++|+|++|..-. .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555443 333 2333444555666666666553221 22233344556666666654331 122
Q ss_pred cccCCCCcccEEEccCCcC---c-----CCCchhhccCCccEEEccCC
Q 048786 141 DTLGKVESLEELDVSGTAI---R-----RPTSSIFLMKNLRSLYFSGC 180 (862)
Q Consensus 141 ~~l~~l~~L~~L~l~~~~~---~-----~~~~~l~~l~~L~~L~L~~~ 180 (862)
+.+..-+.|++|+++++.. . .+...+..-+.|+.|++..+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3344445566666654322 2 12223334456666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.29 E-value=0.63 Score=42.17 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=14.1
Q ss_pred CcEEEccCccCcccCcc-CCCCCCCCEEEccCC
Q 048786 78 LSKLYLDGTSIAEVPSS-IELLPGLELLYLNEC 109 (862)
Q Consensus 78 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 109 (862)
|++|+|++|.|+.+|.. +..+++|+.|+|.+|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 44444444444444433 334444444444443
Done!