BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048788
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 159/377 (42%), Gaps = 26/377 (6%)
Query: 94 GLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDI 153
GL M + P+ Q GA R + + + + ++L + S+PI + + I+ F E +
Sbjct: 66 GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 154 ATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQL- 212
AT Y+ + + A L LR + ++T P + +LL+IP+N+ V
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185
Query: 213 ---NLGIKGVALSGVWTNFNLVASLIIYIIISK--VYQKTWGGFSMDCFKECKTLLNLAI 267
LG G ++ + ++ L+ YI+ SK + K + F KE L L
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245
Query: 268 PSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGN 327
P ++ E + ++ LL L +A+ + + +SL+++FP S+ +VS RVG+
Sbjct: 246 PVAAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303
Query: 328 ELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPII 387
+LG K A +AA VGL R+ A ++T+++ ++AL +L
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363
Query: 388 GLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPV------------------A 429
+ + + Q G LRG + ++++G P
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 423
Query: 430 VWLAFYMGFDFEGLWLG 446
WL F +G L LG
Sbjct: 424 FWLGFIIGLSAAALMLG 440
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 166/403 (41%), Gaps = 37/403 (9%)
Query: 87 TGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTI----------LLLMFTSIPISLL 136
T Y G+ + P+ Q +GA + G ++ I ++LM+ +I
Sbjct: 61 TVYITFMGIMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRN 120
Query: 137 WLNMKNILLFCGQNEDIATVAQSYLFYSL--PDLLAQSLLHPLRIYLRSQAITLPLTFCA 194
WL + + + T+AQ LF SL P + LH L + + ++F A
Sbjct: 121 WLTLSDYVE--------GTMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAA 172
Query: 195 TLSILLHIPINY-FLVTQLNLGIKGVALSGVWTN----FNLVASLIIYIIISKVYQ--KT 247
+L++P+NY F+ + + G A GV T F+ +A L IYI K ++
Sbjct: 173 ---FVLNVPLNYIFVYGKFGMPALGGAGCGVATMAVFWFSALA-LWIYIAKEKFFRPFGL 228
Query: 248 WGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNP--RATIASMGILIQ 305
F + K + + P +S LE + ++ +L+ P +A+ + I
Sbjct: 229 TAKFGKPDWAVFKQIWKIGAPIGLSYFLEASAFSFIV----FLIAPFGEDYVAAQQVGIS 284
Query: 306 TTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKI 365
+ ++Y+ P S+ + + R+G LG + +A+ + V L ++L + R
Sbjct: 285 LSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSP 344
Query: 366 WASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVG 425
ASM+ D ++++ S VL GL + + Q LRG KV I+ F+ G
Sbjct: 345 LASMYNDDPAVLSIASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCG 404
Query: 426 FPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWE 468
LA+ G W L+A+ V ++ L K E
Sbjct: 405 LLPGYLLAYRFDMGIYGFWTALIASLTIAAVALVWCLEKYSME 447
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B11|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B12|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B13|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B14|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
Length = 385
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 5/148 (3%)
Query: 20 APLITKSPTTDSSLA-IREAISIAKIALPMILTGLLLYSRSMISVXXXXXXXXXXXXXXX 78
AP++ K T +L I +AI A + LP ++ Y RS +
Sbjct: 150 APVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYHRS---INVKKLIEIGFSSLNS 206
Query: 79 XXXXXXNITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWL 138
I Y + L + + + H LLG L++ L +FT I+ +L
Sbjct: 207 RLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFL 266
Query: 139 NMKNILLFCGQNEDIATVAQSYLFYSLP 166
++N+ ++ NE+ + FYSLP
Sbjct: 267 PIENV-IYTYVNEENGKIKDMISFYSLP 293
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|B Chain B, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|C Chain C, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4BBH|A Chain A, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|B Chain B, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|C Chain C, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
Length = 384
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 5/148 (3%)
Query: 20 APLITKSPTTDSSLA-IREAISIAKIALPMILTGLLLYSRSMISVXXXXXXXXXXXXXXX 78
AP++ K T +L I +AI A + LP ++ Y RS +
Sbjct: 149 APVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYHRS---INVKKLIEIGFSSLNS 205
Query: 79 XXXXXXNITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWL 138
I Y + L + + + H LLG L++ L +FT I+ +L
Sbjct: 206 RLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFL 265
Query: 139 NMKNILLFCGQNEDIATVAQSYLFYSLP 166
++N+ ++ NE+ + FYSLP
Sbjct: 266 PIENV-IYTYVNEENGKIKDMISFYSLP 292
>pdb|2K0L|A Chain A, Nmr Structure Of The Transmembrane Domain Of The Outer
Membrane Protein A From Klebsiella Pneumoniae In Dhpc
Micelles
Length = 216
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 415 NINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSC 454
N LG G+ V +L F MG+D WLG +A +GS
Sbjct: 49 NDQLGAGAFGGYQVNPYLGFEMGYD----WLGRMAYKGSV 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,168,644
Number of Sequences: 62578
Number of extensions: 460490
Number of successful extensions: 1011
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 7
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)