Query 048788
Match_columns 525
No_of_seqs 289 out of 1803
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 13:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 5.1E-57 1.1E-61 454.0 55.9 437 34-474 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 4.3E-52 9.3E-57 422.4 54.6 431 36-469 26-466 (478)
3 PRK00187 multidrug efflux prot 100.0 1.2E-51 2.7E-56 419.2 56.3 427 35-464 6-443 (464)
4 PRK01766 multidrug efflux prot 100.0 2.9E-49 6.2E-54 403.4 57.4 437 30-469 3-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.4E-49 2.9E-54 403.7 53.4 424 35-464 8-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 4.5E-49 9.8E-54 396.6 54.3 422 36-469 6-434 (441)
7 KOG1347 Uncharacterized membra 100.0 7.4E-39 1.6E-43 319.2 34.7 448 32-481 21-468 (473)
8 TIGR01695 mviN integral membra 100.0 3.9E-36 8.5E-41 311.4 51.5 413 41-465 2-428 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 4.9E-36 1.1E-40 309.7 48.4 415 42-465 2-434 (488)
10 TIGR00797 matE putative efflux 100.0 1.1E-35 2.3E-40 292.8 43.9 338 47-387 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 2.2E-34 4.8E-39 290.3 46.5 406 41-464 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.5E-27 3.2E-32 240.8 50.0 386 69-465 5-403 (451)
13 PRK10459 colanic acid exporter 100.0 5E-27 1.1E-31 242.3 46.1 399 37-464 3-404 (492)
14 COG0728 MviN Uncharacterized m 100.0 4.4E-26 9.6E-31 225.5 50.1 422 37-466 5-438 (518)
15 COG2244 RfbX Membrane protein 100.0 2.4E-24 5.2E-29 221.9 41.3 390 36-447 3-394 (480)
16 COG0534 NorM Na+-driven multid 99.9 6.8E-22 1.5E-26 199.5 27.7 210 255-467 12-223 (455)
17 PRK10367 DNA-damage-inducible 99.9 1.1E-21 2.4E-26 197.9 27.0 207 256-464 5-211 (441)
18 PRK10189 MATE family multidrug 99.9 3.7E-21 8.1E-26 196.0 28.3 207 255-464 24-236 (478)
19 PRK00187 multidrug efflux prot 99.9 3E-21 6.5E-26 196.6 27.3 207 254-464 4-214 (464)
20 PRK09575 vmrA multidrug efflux 99.9 4.8E-21 1E-25 194.8 26.1 209 255-465 7-215 (453)
21 PRK01766 multidrug efflux prot 99.9 3.6E-20 7.8E-25 189.3 28.1 211 253-466 5-219 (456)
22 PF01943 Polysacc_synt: Polysa 99.8 3.9E-16 8.4E-21 148.4 33.5 271 41-328 1-272 (273)
23 TIGR01695 mviN integral membra 99.8 3.8E-16 8.2E-21 162.1 32.9 228 35-272 219-451 (502)
24 TIGR00797 matE putative efflux 99.8 9.5E-17 2.1E-21 158.0 25.5 194 268-464 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.7 2E-18 4.4E-23 150.3 7.9 162 268-431 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 1.7E-14 3.7E-19 146.0 31.8 206 35-242 194-404 (451)
27 PF01554 MatE: MatE; InterPro 99.7 1.4E-17 3.1E-22 144.9 5.4 160 47-207 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.7 8.5E-15 1.8E-19 151.4 25.4 201 35-240 221-433 (488)
29 COG0728 MviN Uncharacterized m 99.7 1.4E-12 3E-17 130.1 35.3 206 36-243 229-439 (518)
30 PF13440 Polysacc_synt_3: Poly 99.6 6.3E-13 1.4E-17 124.6 30.4 247 57-327 2-250 (251)
31 PRK10459 colanic acid exporter 99.6 1.7E-12 3.8E-17 134.2 35.2 200 35-240 203-404 (492)
32 PRK15099 O-antigen translocase 99.6 5.9E-13 1.3E-17 134.5 27.4 198 35-239 211-410 (416)
33 COG2244 RfbX Membrane protein 99.5 4.4E-12 9.5E-17 130.8 27.7 198 34-238 208-407 (480)
34 PF04506 Rft-1: Rft protein; 99.3 4.5E-09 9.7E-14 107.3 32.4 419 43-464 5-469 (549)
35 KOG1347 Uncharacterized membra 99.3 2.2E-10 4.8E-15 115.2 20.4 206 256-465 24-230 (473)
36 KOG2864 Nuclear division RFT1 99.1 1.1E-06 2.4E-11 84.1 32.9 415 36-465 5-449 (530)
37 PF07260 ANKH: Progressive ank 99.0 1.7E-06 3.7E-11 79.3 29.4 267 35-309 7-288 (345)
38 PF14667 Polysacc_synt_C: Poly 98.4 3.4E-05 7.5E-10 65.4 17.8 80 161-242 2-81 (146)
39 PF04506 Rft-1: Rft protein; 98.2 0.00045 9.7E-09 71.1 24.1 203 38-241 252-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.2 0.00031 6.8E-09 66.3 20.0 188 264-465 3-191 (273)
41 PF13440 Polysacc_synt_3: Poly 98.0 0.0019 4E-08 60.2 21.6 166 281-463 5-171 (251)
42 PF14667 Polysacc_synt_C: Poly 98.0 5.6E-05 1.2E-09 64.1 9.3 79 384-465 2-80 (146)
43 PF07260 ANKH: Progressive ank 97.9 0.0095 2.1E-07 55.3 22.8 161 255-421 6-169 (345)
44 KOG2864 Nuclear division RFT1 97.7 0.018 3.9E-07 56.0 22.0 198 41-240 241-448 (530)
45 COG4267 Predicted membrane pro 97.0 0.36 7.9E-06 46.1 36.5 337 87-450 72-431 (467)
46 COG4267 Predicted membrane pro 83.4 47 0.001 32.4 19.3 137 311-464 74-210 (467)
47 TIGR00822 EII-Sor PTS system, 70.2 94 0.002 29.0 14.4 35 308-342 107-141 (265)
48 KOG2533 Permease of the major 68.7 1.5E+02 0.0033 30.7 32.9 65 172-236 154-222 (495)
49 PF05977 MFS_3: Transmembrane 63.7 1.9E+02 0.0042 30.2 38.6 49 39-87 10-60 (524)
50 PF04505 Dispanin: Interferon- 56.0 70 0.0015 23.7 6.7 40 315-354 34-73 (82)
51 COG2211 MelB Na+/melibiose sym 54.5 2.6E+02 0.0056 28.7 29.2 52 36-87 9-63 (467)
52 PRK03612 spermidine synthase; 50.4 3.2E+02 0.0069 28.6 24.0 31 46-76 21-52 (521)
53 PF03547 Mem_trans: Membrane t 49.6 1.7E+02 0.0037 29.0 10.7 23 425-450 108-130 (385)
54 PLN00028 nitrate transmembrane 48.6 3.2E+02 0.0069 28.0 37.8 15 317-331 303-317 (476)
55 PF12794 MscS_TM: Mechanosensi 47.3 2.8E+02 0.0061 27.0 23.1 26 336-361 120-145 (340)
56 PF10160 Tmemb_40: Predicted m 43.1 2.8E+02 0.006 25.7 10.0 84 332-418 109-192 (261)
57 PF05684 DUF819: Protein of un 38.1 4.2E+02 0.009 26.4 13.4 18 444-461 147-164 (378)
58 PRK11663 regulatory protein Uh 37.4 4.4E+02 0.0096 26.5 37.5 19 438-456 400-418 (434)
59 PF01102 Glycophorin_A: Glycop 35.8 46 0.001 26.8 3.3 9 442-450 68-76 (122)
60 PRK06814 acylglycerophosphoeth 34.8 7.9E+02 0.017 28.6 39.9 32 173-204 129-160 (1140)
61 PF14184 YrvL: Regulatory prot 34.0 2.7E+02 0.0057 22.9 13.3 108 121-230 6-114 (132)
62 PF03904 DUF334: Domain of unk 33.0 2.9E+02 0.0064 24.9 7.9 40 110-149 141-180 (230)
63 PF05313 Pox_P21: Poxvirus P21 31.0 2.1E+02 0.0045 24.7 6.4 27 215-241 135-161 (189)
64 PRK15403 multidrug efflux syst 30.1 5.7E+02 0.012 25.5 39.7 26 446-471 378-403 (413)
65 PRK09546 zntB zinc transporter 29.4 1.5E+02 0.0033 28.6 6.4 49 415-467 266-323 (324)
66 PRK10429 melibiose:sodium symp 25.1 7.4E+02 0.016 25.2 33.9 33 38-70 5-38 (473)
67 PF13347 MFS_2: MFS/sugar tran 24.4 7.2E+02 0.016 24.8 21.4 24 310-333 268-291 (428)
68 TIGR00383 corA magnesium Mg(2+ 23.9 2.5E+02 0.0054 27.0 6.8 53 411-467 256-317 (318)
69 PF00558 Vpu: Vpu protein; In 23.8 1.1E+02 0.0024 22.6 3.1 19 459-477 27-45 (81)
70 PF15176 LRR19-TM: Leucine-ric 23.0 3.5E+02 0.0076 20.9 5.7 19 503-521 82-100 (102)
71 KOG2325 Predicted transporter/ 22.8 8.6E+02 0.019 25.2 15.4 40 33-72 28-67 (488)
72 PF01595 DUF21: Domain of unkn 21.7 5.1E+02 0.011 22.1 14.9 53 321-373 102-154 (183)
73 PF06609 TRI12: Fungal trichot 21.4 1E+03 0.022 25.4 36.6 48 35-82 40-88 (599)
74 PF07074 TRAP-gamma: Transloco 21.1 2.8E+02 0.0061 23.7 5.5 54 409-465 16-69 (170)
75 PF06679 DUF1180: Protein of u 20.4 80 0.0017 26.9 2.2 13 501-513 148-160 (163)
76 PRK09556 uhpT sugar phosphate 20.0 9.2E+02 0.02 24.4 33.6 18 315-332 307-324 (467)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=5.1e-57 Score=454.02 Aligned_cols=437 Identities=26% Similarity=0.358 Sum_probs=415.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChh
Q 048788 34 AIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHN 113 (525)
Q Consensus 34 ~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 113 (525)
.++..|+++++++|.++++++..+++++|+.++||+|++++++.+++.++..++ ..+..|++.|.++++||++|++|++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 567999999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 048788 114 LLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTF 192 (525)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 192 (525)
++++..++++.+.++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..+...+.+++|+.||++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999887766 99999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhh-chhccCCCChhhHHHHHHHHHhHhhh
Q 048788 193 CATLSILLHIPINYFLVTQ-LN-LGIKGVALSGVWTNFNLVASLIIYIIISKV-YQKTWGGFSMDCFKECKTLLNLAIPS 269 (525)
Q Consensus 193 ~~~~~~~~~i~~~~~li~~-~~-~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~il~~~~p~ 269 (525)
.+++++++|+++|++|+++ ++ +|+.|+++||++++.+..++.++++.++++ ......+..+++++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999988775 22222333377889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 048788 270 CISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSF 349 (525)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 349 (525)
.++++.+...+...+.+++++|+ +++|+|+++.++.++.+++..|++++.++++++++|+||++++++..+.+.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999976 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHH
Q 048788 350 MLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVA 429 (525)
Q Consensus 350 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 429 (525)
.++...+++++++++++..+|++|+|+.+.+..++++..+..++++.+....+.+|+.||+|.++..++++.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 048788 430 VWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRA 474 (525)
Q Consensus 430 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (525)
+++.... +|..|+|++...++.+..+...+++++.+|++...+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9998876 8999999999999999999999999999888776544
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=4.3e-52 Score=422.38 Aligned_cols=431 Identities=17% Similarity=0.195 Sum_probs=400.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHH
Q 048788 36 REAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLL 115 (525)
Q Consensus 36 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 115 (525)
+..|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|+++|.+++++|++|++|++++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4589999999999999999999999999999999999999999999998887 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 048788 116 GLALQKTILLLMFTSIPISLL-WLNMKNILLFCG--QNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTF 192 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 192 (525)
++..+.++.+...++++.+++ +.+.++++.+++ .|+++.+.+.+|+++..++.|+..+...+.+++|+.||++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988876 778889999884 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHHHHHHHHHHhhhh--chhccCC-CChhhHHHHHHHHHh
Q 048788 193 CATLSILLHIPINYFLVTQL----NLGIKGVALSGVWTNFNLVASLIIYIIISKV--YQKTWGG-FSMDCFKECKTLLNL 265 (525)
Q Consensus 193 ~~~~~~~~~i~~~~~li~~~----~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~k~il~~ 265 (525)
.+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++++ .+.++++ +.+.+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 99999999999999999753 7899999999999999998887666654322 2222222 223478899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 048788 266 AIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGL 345 (525)
Q Consensus 266 ~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~ 345 (525)
|+|..++.........+.+.+++++++ +++|+|+++.++.++.+++..|++++.+|.+++++|++|++++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999988888888999975 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 048788 346 SCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVG 425 (525)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 425 (525)
++++++++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.+++.||++.++.+++++.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 048788 426 FPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEF 469 (525)
Q Consensus 426 i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 469 (525)
+|+.+++....++|+.|+|++..+++.+..++..+++++.+|++
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99999998877899999999999999999999999999999987
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.2e-51 Score=419.18 Aligned_cols=427 Identities=24% Similarity=0.339 Sum_probs=393.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhH
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNL 114 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 114 (525)
++..|++++.++|.+++++...+.+++|+.+++|+|++++++++++.++..+. ..+..|+++|..+.++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 46799999999999999999999999999999999999999999999999988 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 048788 115 LGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCA 194 (525)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (525)
++++++.++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999887775577899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc-hhc-cCCCChhhHHHHHHHHHhHhh
Q 048788 195 TLSILLHIPINYFLVTQL----NLGIKGVALSGVWTNFNLVASLIIYIIISKVY-QKT-WGGFSMDCFKECKTLLNLAIP 268 (525)
Q Consensus 195 ~~~~~~~i~~~~~li~~~----~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~k~il~~~~p 268 (525)
+++.++|++++++|+++. ++|+.|+++|+.+++.+..+.+++|++++++. +.+ ++++.+++++.+|++++.|+|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999753 58999999999999988887776777654322 122 122225678889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 048788 269 SCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCS 348 (525)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 348 (525)
.+++++.+.....+++.+++++++ +++|+++++.++..+...+..+++++.++.+|+++|++|++++++..+.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G~--~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALGS--TQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999975 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhhcccCC--cH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHH
Q 048788 349 FMLGFSALFFAASVRKIWASMFTQ--DK---EIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYI 423 (525)
Q Consensus 349 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 423 (525)
.+++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.+++.++....+++++.||++.+++.++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 6888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 424 VGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 424 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
+++|+++++.+.+++|+.|+|+++.+++.+..+....++++
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999988877766644
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.9e-49 Score=403.40 Aligned_cols=437 Identities=24% Similarity=0.400 Sum_probs=402.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC
Q 048788 30 DSSLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGA 109 (525)
Q Consensus 30 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~ 109 (525)
|++..++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++..+. ..+..|++.+..+.+||++|+
T Consensus 3 ~~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~ 81 (456)
T PRK01766 3 ETQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGA 81 (456)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 4456678899999999999999999999999999999999999999999999987776 788899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChh
Q 048788 110 QRHNLLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITL 188 (525)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 188 (525)
+|+++.++.++.++.+.++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.++..+...+++++++.|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~ 161 (456)
T PRK01766 82 GRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTK 161 (456)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 999999999999999999999988776 7777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhch--hccCCCChhhHHHHHHH
Q 048788 189 PLTFCATLSILLHIPINYFLVTQ----LNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQ--KTWGGFSMDCFKECKTL 262 (525)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~li~~----~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~i 262 (525)
.+++.++++.++|+++++++++. .++|+.|+++++.+++.+..++..++.+++++.+ +.+.++.+++++.+|++
T Consensus 162 ~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i 241 (456)
T PRK01766 162 PTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRL 241 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHH
Confidence 99999999999999999999864 2589999999999999999998888776544321 12223335577889999
Q ss_pred HHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 048788 263 LNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAI 342 (525)
Q Consensus 263 l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~ 342 (525)
++.++|.+++.+.+...+.++..+++++++ +++++++++.++.++...+..+++.+.++.+++++|+||++++++..+
T Consensus 242 l~l~~P~~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~ 319 (456)
T PRK01766 242 LKLGLPIGLAIFFEVSLFAVVTLLVSPLGT--VTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAY 319 (456)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999999975 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHH
Q 048788 343 VGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFY 422 (525)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 422 (525)
.++++++.++++.+++++.+++++..+|++|+++.+.+..++++..++.++++++....+++++.||++.+++.++++.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~ 399 (456)
T PRK01766 320 IGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYW 399 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 048788 423 IVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEF 469 (525)
Q Consensus 423 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 469 (525)
++.+|..+++...+++|..|+|+++.+++.+..++.++++++.+|+.
T Consensus 400 ~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 400 VLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999999999999999998888877765554
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.4e-49 Score=403.69 Aligned_cols=424 Identities=16% Similarity=0.181 Sum_probs=390.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChh
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHN 113 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 113 (525)
++..|++++.++|.+++++...+++++|+.+++| +|++++++++++.++..+. ..+..+++.|.+++++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4678999999999999999999999999999999 6999999999999999987 7888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 048788 114 LLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTF 192 (525)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 192 (525)
++++.++.++.+..+++++..++ +.+.++++.+++.++++.+.+.+|+++..++.++..+......++|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988876 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc-hhccCCCChhhHHHHHHHHHhHhhhHH
Q 048788 193 CATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVY-QKTWGGFSMDCFKECKTLLNLAIPSCI 271 (525)
Q Consensus 193 ~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~il~~~~p~~l 271 (525)
.++++.++|+++++++++.+++|+.|+++|+++++.+..++.++++++++.. +.+.+.+ +++++.+|+++++|+|..+
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHH
Confidence 9999999999999999988899999999999999999998887777654332 2222222 5677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 048788 272 SVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFML 351 (525)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 351 (525)
+.....+...+.+.++++++ +++++|+++++.++..+...+..|++++..|.+|+++|+||++++++..+.++++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g-~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYG-SALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 35689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhcccCC-cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHH
Q 048788 352 GFSALFFAASVRKIWASMFTQ-DKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAV 430 (525)
Q Consensus 352 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~ 430 (525)
+++.++++.++++++..+|+. |+|+.+.+..++++.+++.++++++....+++|+.||++.++..++... ++++|..+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHH
Confidence 999999999999999999995 7899999999999999999999999999999999999999999998764 78899999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 431 WLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 431 ~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
++... +|+.|+|+++.+++.+..++..+++++
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 88654 799999999999999988877766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=4.5e-49 Score=396.60 Aligned_cols=422 Identities=17% Similarity=0.179 Sum_probs=373.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhH
Q 048788 36 REAISIAKIALPMILTGLLLYSRSMISVLFLGRL-GELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNL 114 (525)
Q Consensus 36 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 114 (525)
+..|+++++++|.++++++..+++++|+.++||+ |++++++++++.++..+. ..+..+++.+..+++||++|++|+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 5588999999999999999999999999999996 777999999999999988 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 048788 115 LGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFC 193 (525)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 193 (525)
+++..++++.+.++++++..++ ..+.++++.+++.++++.+.+.+|+++..++.|+..+...+.+++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988766 778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhch-hccCCCChhh-HHHHHHHHHhHhhhHH
Q 048788 194 ATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQ-KTWGGFSMDC-FKECKTLLNLAIPSCI 271 (525)
Q Consensus 194 ~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~k~il~~~~p~~l 271 (525)
++++.++|+++++++++.+++|+.|+++||.+++.+..++..++++++++.+ .+.+.+ +++ ++.+|+++++|.|..+
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHHH
Confidence 9999999999999999988999999999999999999988877776543221 111112 222 3578999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 048788 272 SVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFML 351 (525)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 351 (525)
++......+.+.+.+++++|+ +++|+|+++.++.++.+++..|++++.+|.+++++|+||++++|+..+.+.++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCC---cchhHHHHHHHHHHHHHHH
Q 048788 352 GFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTAR---PKVGANINLGCFYIVGFPV 428 (525)
Q Consensus 352 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~~ 428 (525)
+.+.+++++++++++..+|++|+|+.+.+..++++.++..+.........+++++.+| +|.++..++++.|+..++.
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764433344444445555555 9999999999876422211
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 048788 429 AVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEF 469 (525)
Q Consensus 429 ~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 469 (525)
+.+|..|+|++..+++.+..++..+++++. |++
T Consensus 402 -------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 402 -------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred -------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 247999999999999999998888766654 643
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=7.4e-39 Score=319.15 Aligned_cols=448 Identities=40% Similarity=0.668 Sum_probs=427.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCC
Q 048788 32 SLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQR 111 (525)
Q Consensus 32 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 111 (525)
++..++.|++++++.|.++..+.+.+.+.+++.++||+|+.++++.+++.++.+..+..+..|+..+..++++|++|.++
T Consensus 21 ~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~ 100 (473)
T KOG1347|consen 21 SQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK 100 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc
Confidence 33468899999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHH
Q 048788 112 HNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLT 191 (525)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 191 (525)
++....+.+++..+....+++...++.+.++++..+++++++...+..|.++.++..+.+........++|++++.....
T Consensus 101 ~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 101 FTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHH
Q 048788 192 FCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCI 271 (525)
Q Consensus 192 ~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l 271 (525)
+...+..++|+.+++++++..++|+.|++++..+++.+...++..|..... .+..|..++.. ++.+++++++++|..+
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~ 258 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAV 258 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence 999999999999999999999999999999999999999999999987655 45667777555 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 048788 272 SVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFML 351 (525)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 351 (525)
+..++++.+.+..+..|.+++...++++.++..++....+++..+++.+.+.++++.+|+++++++|.....+...++..
T Consensus 259 miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~ 338 (473)
T KOG1347|consen 259 MICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAI 338 (473)
T ss_pred eeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHH
Confidence 99999999999999999998667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHH
Q 048788 352 GFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVW 431 (525)
Q Consensus 352 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~ 431 (525)
+...+..++..++.+..+|++|+|+.+......++++.+.++++.+.+..+..++.|+++...++++...+++++|..+.
T Consensus 339 g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~ 418 (473)
T KOG1347|consen 339 GASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLY 418 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCC
Q 048788 432 LAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKELTGDG 481 (525)
Q Consensus 432 l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (525)
+.+..++|..|.|.++..+..+..........+.+|.++..+++++....
T Consensus 419 l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~ 468 (473)
T KOG1347|consen 419 LGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIAS 468 (473)
T ss_pred EEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhh
Confidence 99888999999999999998888888888889999999999988876653
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=3.9e-36 Score=311.43 Aligned_cols=413 Identities=15% Similarity=0.108 Sum_probs=350.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhcCCChhHHHH
Q 048788 41 IAKIALPMILTGLLLYSRSMISVLFLGR-LGELAL-AGGSLAVGFANITGYSIL-SGLAMGMEPICGQAFGAQRHNLLGL 117 (525)
Q Consensus 41 i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 117 (525)
+.|.+.-.+++++++.+++++|.++++| +|++++ ++++.+.++..++..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788899999999999999999999999 999999 899999999877633333 468888777776653322 67777
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 048788 118 ALQKTILLLMFTSIP-ISLL-WLNMKNILLFC--GQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFC 193 (525)
Q Consensus 118 ~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 193 (525)
.+.+++....+.+.+ ..++ +.+.+++..++ +.+++..+.+.+|++++.++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777777666655544 4444 77778888877 4577778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhH--HHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHH
Q 048788 194 ATLSILLHIPINYFLVTQLNLGIKGVA--LSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCI 271 (525)
Q Consensus 194 ~~~~~~~~i~~~~~li~~~~~gi~g~a--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l 271 (525)
+++.++++++..+++ ..++|..|++ +++++++.+..++.+++.++++. +.+ .++ +.+++.+|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLK-PRF-NFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccc-CcC-CCCChhHHHHHHHHHHHHH
Confidence 999988877653333 3468999988 99999999998887766654432 111 122 3456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 048788 272 SVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYI-FPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFM 350 (525)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 350 (525)
++....+...+++.+.+.++. +++++|+.+.++.++... +..+++++..|.+++++|++|++++++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988666654 899999999999988765 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHhhcccCC----cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHH
Q 048788 351 LGFSALFFAASVRKIWASMFTQ----DKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGF 426 (525)
Q Consensus 351 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 426 (525)
++++.++++.++++++..++.+ |+|.++.+..++++++++.++.+++......+++.||+|.+++.++.+. ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999976 5677888999999999999999999999999999999999999999986 7888
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 048788 427 PVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKT 465 (525)
Q Consensus 427 ~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 465 (525)
++.+++... +|..|+|+|+.+++.+..++..++++|+
T Consensus 392 ~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888543 7999999999999999988887777665
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=4.9e-36 Score=309.70 Aligned_cols=415 Identities=14% Similarity=0.151 Sum_probs=350.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHHHHHHH
Q 048788 42 AKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQ 120 (525)
Q Consensus 42 ~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 120 (525)
.+.+.|.+++++...+.+++|..+++| +|++++|+++.+.++..++......|++++..+.+++..|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 9999999999999998887444567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048788 121 KTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSIL 199 (525)
Q Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (525)
.++.+..+.+++..++ +.+.+++..+++.+++. ..+++++.+..++..+....++++|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988776 66777777766655543 346788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhch--hccCCCChhhHHHHHHHHHhHhhhHHH
Q 048788 200 LHIPINYFLVTQ-----LNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQ--KTWGGFSMDCFKECKTLLNLAIPSCIS 272 (525)
Q Consensus 200 ~~i~~~~~li~~-----~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~il~~~~p~~l~ 272 (525)
+++.++..++.. .+.|+.|+++++.+++.+..+..+++.+++++.+ ..+.+..+.+++.+|+++++|+|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776665542 2456788889999999999988766665443322 112222245577899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC--h---h---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 048788 273 VCLEWWWYEIMILLCGYLLN--P---R---ATIASM-GILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIV 343 (525)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~--g---~---~~~a~~-~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~ 343 (525)
++...+...+|+.++++... | . ...+.| +++.++..+...+..+++++..|.+++++|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988876431 0 1 223333 3566777788788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHH
Q 048788 344 GLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYI 423 (525)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 423 (525)
+.++...++.+.++++.++++++..++.++++ +..+++++++..++..++....+++++.||+|..++.++++. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 678899999999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 048788 424 VGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKT 465 (525)
Q Consensus 424 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 465 (525)
+++++.+.+...+.+|..|+|+++.+++.+..++..++.+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887644678999999999999999999888877653
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.1e-35 Score=292.75 Aligned_cols=338 Identities=30% Similarity=0.457 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 048788 47 PMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLL 126 (525)
Q Consensus 47 p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 126 (525)
|.++++++..+++.+|+.+++++|++++++++++.++..+. ..+..|++++..+.+++++|++|+|+.++.++.++.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 048788 127 MFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPIN 205 (525)
Q Consensus 127 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 205 (525)
.+++++.+++ +.+.+++..+++.+++..+.+..|++++.++.++..+.....+++++.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998876 888889999988788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q 048788 206 YFLVT-QLN-LGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIM 283 (525)
Q Consensus 206 ~~li~-~~~-~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l~~~~~~~~~~~~ 283 (525)
++++. .++ +|+.|+++++.+++++..++..++.+++++.+..|+...+++++.+|+++++|+|.+++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 567 8899999999999999998887777653333333333235678899999999999999999999999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048788 284 ILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVR 363 (525)
Q Consensus 284 ~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (525)
+.+++.++. +++++|+++.++.++...+..+++++..|.+++++|++|+++.++..++++++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998865 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcccCCcHHHHHHHHHHHHHH
Q 048788 364 KIWASMFTQDKEIIALTSIVLPII 387 (525)
Q Consensus 364 ~~i~~l~~~~~~~~~~~~~~l~i~ 387 (525)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.2e-34 Score=290.31 Aligned_cols=406 Identities=12% Similarity=0.010 Sum_probs=343.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHHHHHH
Q 048788 41 IAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLAL 119 (525)
Q Consensus 41 i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 119 (525)
++|.+.+...++++..+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788999999999999999999999999 99999999999999988875555888888989999987 68889999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048788 120 QKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSI 198 (525)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (525)
++++.+....+++.+++ +.+.+++..+++.+++. ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 88888988877766642 24556666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHHHHHHHHH
Q 048788 199 LLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWW 278 (525)
Q Consensus 199 ~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l~~~~~~~ 278 (525)
++|+.+ +++.+. ..|+.|+++|+++++.+..+...++++++++.+.++.++ +++++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444443 249999999999999999887766665544322222222 45788899999999999999999999
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 048788 279 WYEIMILLCGYLLNPRATIASMGILIQTTSL-IYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALF 357 (525)
Q Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~-~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (525)
....++.++++.. |++++|+|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....++++.++
T Consensus 234 ~~~~~~~~l~~~~-g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (416)
T PRK15099 234 AYVMMRNLLAAHY-SWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASF 309 (416)
T ss_pred HHHHHHHHHHhcC-CHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997443 45999999999999774 5888999999999999985 67899999999999999999999999
Q ss_pred HHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 048788 358 FAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMG 437 (525)
Q Consensus 358 ~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 437 (525)
+++++++++..++.+|+ ++.+.+++++++++.++...+......+.+.++++......+... ++++++.+++.+.
T Consensus 310 ~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~~-- 384 (416)
T PRK15099 310 TVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIPL-- 384 (416)
T ss_pred HHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--
Confidence 99999999999999876 566888999999999998888888877778888877777776654 7888888888654
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 438 FDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 438 ~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
+|..|+++++.+++.+..++......+
T Consensus 385 ~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 385 HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998887766554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.98 E-value=1.5e-27 Score=240.77 Aligned_cols=386 Identities=16% Similarity=0.090 Sum_probs=336.3
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 048788 69 LGEL-ALAGGSLAVGFANITGYSIL-SGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLL-WLNMKNILL 145 (525)
Q Consensus 69 lg~~-~~~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 145 (525)
+|.. +..+|..+..+..++...+. .+++++..|..++.. ++++++.++..+..+.+..+.+++++++ +++++++.+
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6766 56689999999998844454 468999999999998 8899999999999998888888888876 888899988
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCC---cchhH
Q 048788 146 FC--GQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLG---IKGVA 220 (525)
Q Consensus 146 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---i~g~a 220 (525)
.+ +.+++..+.+.++++++.+..++..+..+..+++++++|...+....++.++..++...++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 77 557888999999999999999999999999999999999999999998888776665444433 356 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHH
Q 048788 221 LSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASM 300 (525)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (525)
+|.+++.++..++.+...+|.+.. .+ ..+ +...+..|++++...|..++....++...+++.+.+.+++ .+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFR-FR-PKF-DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-cc-ccC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHHH
Confidence 999999999998887777654432 11 111 3345679999999999999999999999999999999876 899999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccC----CcHH
Q 048788 301 GILIQTTSLIYI-FPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFT----QDKE 375 (525)
Q Consensus 301 ~~~~~i~~~~~~-~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~ 375 (525)
+.++++.++... +..+++++..|..++...++|.++.++..++.++....+.+|.+++++.+++++++++. -|+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 999999999765 56799999999999999999999999999999999999999999999999999999885 2566
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 048788 376 IIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCV 455 (525)
Q Consensus 376 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~ 455 (525)
..+.....+++++++.++.+++.++...+.+.||+|.++..++++. ++++.+++.+.. .+|..|+++|+.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~--~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVP--FFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999987 788888877755 4899999999999999999
Q ss_pred HHHHHHHhcC
Q 048788 456 VTMLVVLGKT 465 (525)
Q Consensus 456 ~~~~~~~~~~ 465 (525)
++..+.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888887776
No 13
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=5e-27 Score=242.34 Aligned_cols=399 Identities=12% Similarity=0.055 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHH
Q 048788 37 EAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLL 115 (525)
Q Consensus 37 ~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 115 (525)
..++..+.+.+..++++...+.+++..++++| +|++++|.++.+..+..++......|++.+.. |. .+++
T Consensus 3 ~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~---- 73 (492)
T PRK10459 3 LREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDIS---- 73 (492)
T ss_pred hHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCC----
Confidence 34678899999999999999999999999999 99999999999999999886666777777653 21 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 048788 116 GLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCA 194 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (525)
++...+.+.+....+++..++ +.+.+++..+++ +++. ...+++..+..++..+.....+.++..++.+......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 74 HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 234455666667777766655 555555555554 3332 3456777778888888888999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHHHHH
Q 048788 195 TLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVC 274 (525)
Q Consensus 195 ~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l~~~ 274 (525)
++..+...++...+.. .+.|+.+.+++.++++.+..++..+... ++ .+++ + +.+++..|++++++.|...+++
T Consensus 149 ~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~~-~~~~---~-~~~~~~~k~ll~~~~~~~~~~~ 221 (492)
T PRK10459 149 ISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-KI-YRPA---L-HFSLASVKPNLSFGAWQTAERI 221 (492)
T ss_pred HHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-cc-CCcc---c-eecHHHHHHHHhhhHHHHHHHH
Confidence 8888887777666554 4789999999999999887765433222 21 1111 1 2346778999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 048788 275 LEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYI-FPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGF 353 (525)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 353 (525)
...+...+|+.+++.+. |++++|.|+.+.++.+.... +...+++...|..++. ++|.++.++.+++..++...+++
T Consensus 222 ~~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~ 298 (492)
T PRK10459 222 INYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINF 298 (492)
T ss_pred HHHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 68999999999999887544 4566788999999885 57889999999999999999999
Q ss_pred HHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 048788 354 SALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLA 433 (525)
Q Consensus 354 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 433 (525)
|.++++.+.++++..++.+++ +..+...++++++..++..........+++.||+|..+..+++.. ++.+|..+.+.
T Consensus 299 p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~ 375 (492)
T PRK10459 299 PLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG 375 (492)
T ss_pred HHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999888765 778899999999999999999999999999999999999888876 66677666554
Q ss_pred HHhCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 434 FYMGFDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 434 ~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
. .+|..|+++++.+++.+...+..+...|
T Consensus 376 ~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 Q--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred h--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4799999999999999988887776633
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=4.4e-26 Score=225.51 Aligned_cols=422 Identities=15% Similarity=0.086 Sum_probs=355.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh-HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhhhcCCChh
Q 048788 37 EAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGEL-ALAGGSLAVGFANITGYSILSG-LAMGMEPICGQAFGAQRHN 113 (525)
Q Consensus 37 ~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~-~~~~~~~~~~i~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~ 113 (525)
...+++|.++-.....+++.+.+++...+++. +|+. ...++..+..+.+++.-.+..| ++++..|...++..++++|
T Consensus 5 ~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~ 84 (518)
T COG0728 5 SKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEE 84 (518)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhh
Confidence 34566777777778888889999999999999 9996 6679999999999986666655 7999999999998887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhH
Q 048788 114 LLGLALQKTILLLMFTSIPISLL-WLNMKNILLFC-GQ--NEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLP 189 (525)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 189 (525)
+.++..+........+.+.++++ .++.+++.+.. +. +++....+....+++.+..++.++.....+.+++.+|...
T Consensus 85 ~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~ 164 (518)
T COG0728 85 AARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFI 164 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeech
Confidence 88777777776777777777776 77777777444 33 2343446888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhh
Q 048788 190 LTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPS 269 (525)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~ 269 (525)
+.+..+.-++.-+.....+.........+.++++.++-+.+.++.+..++|.+...+.. + ..+.+.+|++.+.-.|.
T Consensus 165 ~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~--~-~~~~~~lk~~~~~~~p~ 241 (518)
T COG0728 165 PAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR--F-GFKDPGLKRFLKLMLPA 241 (518)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC--C-CCCchhHHHHHHHHHHH
Confidence 99999888888886655555443334678899999999999999988887655322111 1 23447899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 048788 270 CISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIY-IFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCS 348 (525)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~-~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 348 (525)
.++....++...+++.+.+.+.+ .+++.++.+.++.++.. .+..++++...|..|++..++|.++.++..+.+++++
T Consensus 242 ~l~~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ 319 (518)
T COG0728 242 LLGVSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLT 319 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 99999999999999999999976 88999999999999986 5679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhhcccCC----cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHH
Q 048788 349 FMLGFSALFFAASVRKIWASMFTQ----DKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIV 424 (525)
Q Consensus 349 ~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 424 (525)
+.+.+|.++++..++++++.++.. +++........+..++++.++..+..++...+++.+|+|.|+++++++. ++
T Consensus 320 lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~ 398 (518)
T COG0728 320 LLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VV 398 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HH
Confidence 999999999999999999998842 4455678889999999999999999999999999999999999999987 88
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 048788 425 GFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTD 466 (525)
Q Consensus 425 ~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 466 (525)
++.+++.+. +.+|..|.++++.++..++..+.++..+|+.
T Consensus 399 n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 399 NILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998886654 4589999999999998888888777776653
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=2.4e-24 Score=221.91 Aligned_cols=390 Identities=18% Similarity=0.133 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhH
Q 048788 36 REAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNL 114 (525)
Q Consensus 36 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 114 (525)
...+++.|.+.....+++...+.+++...+++| +|++++|.++.+.++..++......|+..+..+.+++...++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 457889999999999999999999999999999 9999999999999999999777779999999999998866555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 048788 115 LGLA-LQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFC 193 (525)
Q Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 193 (525)
.... ...........+.+.........+. + +.....+++..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------D----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5544 4444444444444443332222221 1 223344677888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHHHH
Q 048788 194 ATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISV 273 (525)
Q Consensus 194 ~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l~~ 273 (525)
.+.. ..-......+.. .......++..++..........+..++++. ..+..+ +..++..|+++++|+|..+..
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRG-LKRPIL-RFSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccccc-CchhHHHHHHHHHhhHHHHHH
Confidence 4444 111111122221 3445566666666666665555555322221 111111 235789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 048788 274 CLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGF 353 (525)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 353 (525)
....+....|+.+++++. |++++|.|+.+.++......+..+++.+..|..++...+++.++.++..+++.++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 048788 354 SALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLA 433 (525)
Q Consensus 354 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 433 (525)
|..+++.++++++..++.+++ +..+...++++++..++.++.......+++.|+++..++.+.++. +.++.+.+.+.
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li 382 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI 382 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH
Confidence 999999999999999998866 444899999999999999999999999999999999999999987 77887777775
Q ss_pred HHhCCCchHHHHHH
Q 048788 434 FYMGFDFEGLWLGL 447 (525)
Q Consensus 434 ~~~~~g~~G~~~a~ 447 (525)
. .+|..|++.++
T Consensus 383 ~--~~g~~g~~~a~ 394 (480)
T COG2244 383 P--RFGLIGAAIAT 394 (480)
T ss_pred H--hhhhhhHHHHH
Confidence 4 47888988888
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=6.8e-22 Score=199.50 Aligned_cols=210 Identities=23% Similarity=0.209 Sum_probs=201.5
Q ss_pred hHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCh
Q 048788 255 CFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQP 334 (525)
Q Consensus 255 ~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 334 (525)
.++..|+++++++|.+++++...+...+|+.++|+++. +++|+.++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~--~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGA--EALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 45689999999999999999999999999999999975 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhH
Q 048788 335 KKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGA 414 (525)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 414 (525)
+++++..++++.++++++++..++.+.+++++..++++++|+.+.+..|+++..++.++..++....+++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hC-CCchHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 048788 415 NINLGCFYIVGFPVAVWLAFY-MG-FDFEGLWLGLLAAQGSCVVTMLVVLGKTDW 467 (525)
Q Consensus 415 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 467 (525)
+.++++. +.|+.+++++.+. ++ +|+.|+++|+++++.+..++..++++++++
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999998 8999999999987 46 999999999999999999999888887654
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=1.1e-21 Score=197.93 Aligned_cols=207 Identities=15% Similarity=0.158 Sum_probs=194.5
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChH
Q 048788 256 FKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPK 335 (525)
Q Consensus 256 ~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~ 335 (525)
.+..|+++++++|.+++++...+...+|+.++++++ |++++|+.+++.++..+...+..+++.+..+.+|+++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 456889999999999999999999999999999996 4589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHH
Q 048788 336 KAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGAN 415 (525)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 415 (525)
++++..++++.+++++++++.++...+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++|+.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 416 INLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 416 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
.++++. ++++++++++.+.+++|+.|+++|+.+++.+..++..+++.+
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 889999999988888999999999999999988777666554
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=3.7e-21 Score=195.97 Aligned_cols=207 Identities=20% Similarity=0.210 Sum_probs=192.3
Q ss_pred hHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCh
Q 048788 255 CFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQP 334 (525)
Q Consensus 255 ~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 334 (525)
+-+..|+++++++|.+++++...+...+|+.+++++++ +++|+++++.++..+...+..+++++..+.+|+++|++|+
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~ 101 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 45569999999999999999999999999999999865 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccC--CcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcch
Q 048788 335 KKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFT--QDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKV 412 (525)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 412 (525)
+++++..+.++.++++++++.+++.+++++++..++. .|+|+.+.+..|+++..++.++..+.....+++|+.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 413 GANINLGCFYIVGFPVAVWLAFY----MGFDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 413 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
+++.+++.. ++++++.+.+.+. +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 182 ~~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 182 PLLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred hHHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999865 8899999988764 47899999999999999988776655543
No 19
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=3e-21 Score=196.59 Aligned_cols=207 Identities=18% Similarity=0.112 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 048788 254 DCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQ 333 (525)
Q Consensus 254 ~~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~ 333 (525)
++++.+|+++++++|.+++++...+...+|+.+++++++ +++|+++++.++..+...+..+++++..+.+++++|+||
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~--~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGP--EALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467789999999999999999999999999999999865 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchh
Q 048788 334 PKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 413 (525)
++++++..+.++.+.++++++..++++ +.+++..+++.|+|+.+.+..|+++..++.++..+.....+++++.||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999998877765 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 414 ANINLGCFYIVGFPVAVWLAFY----MGFDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 414 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
++.++++. ++++++++++.+. +++|+.|+++|+.+++....+...+++++
T Consensus 161 ~~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 161 MVISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 7899999998753 35899999999999988877766655554
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=4.8e-21 Score=194.79 Aligned_cols=209 Identities=12% Similarity=0.077 Sum_probs=196.4
Q ss_pred hHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCh
Q 048788 255 CFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQP 334 (525)
Q Consensus 255 ~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 334 (525)
+++..|+++++++|.+++++...+...+|+.+++++. |++++++++++.++..+...+..+++.+..+.+++++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 4567899999999999999999999999999999974 458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhH
Q 048788 335 KKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGA 414 (525)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 414 (525)
+++++..+++++++++++++.+++..++++++..+++.|+++.+.+..|+++..++.++..+......++++.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 048788 415 NINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKT 465 (525)
Q Consensus 415 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 465 (525)
..++.+. ++++++++++.+.+++|+.|+++|+.+++.+..++..++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999986 8999999999888889999999999999999988877766554
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=3.6e-20 Score=189.29 Aligned_cols=211 Identities=13% Similarity=0.104 Sum_probs=195.2
Q ss_pred hhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 048788 253 MDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGAN 332 (525)
Q Consensus 253 ~~~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~ 332 (525)
+..++.+|+++++++|.+++++...+...+|..+++++++ +++++++++.++..+...+..+++.+..|.+++++|++
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~--~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSA--TDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3457789999999999999999999999999999999865 89999999999988888899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcch
Q 048788 333 QPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKV 412 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 412 (525)
|++++++..+.++++.+.++++++++++++++++..+++.|+++.+.+..++++.+++.++..+.....+++++.||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 048788 413 GANINLGCFYIVGFPVAVWLAFY----MGFDFEGLWLGLLAAQGSCVVTMLVVLGKTD 466 (525)
Q Consensus 413 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 466 (525)
+++.++++. ++++++++++.+. +.+|+.|+++++.+++.+..++..+++++++
T Consensus 163 ~~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 163 TMVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999999987 7899999888752 4689999999999999999888877776543
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=3.9e-16 Score=148.37 Aligned_cols=271 Identities=20% Similarity=0.229 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHHHHHH
Q 048788 41 IAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLAL 119 (525)
Q Consensus 41 i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 119 (525)
+.|.+.....+++...+.+++...+++| +|++++|.++...++.+++......|++.+..+.+++... ++++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~--~~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKD--KKELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--hHHHHHHHH
Confidence 3678889999999999999999999999 9999999999999999988666689999999998888632 244555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048788 120 QKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSIL 199 (525)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (525)
........+.+++......... ..+.++.. ..+........++.........++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS----FFGNPSLS----LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444433322211 33333221 122222222225778888899999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHHHHHHHHHH
Q 048788 200 LHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWW 279 (525)
Q Consensus 200 ~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l~~~~~~~~ 279 (525)
...++..+++.. +.++.+..++..++.++..++..++.+++.+ .++...+++..|++++++.|.+++.+...+.
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLY 224 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776666654 3458899999999999998888777765442 1122344889999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048788 280 YEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNE 328 (525)
Q Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~ 328 (525)
...|..+++++. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 225 ~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 225 SQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 789999999999999999999999999999999875
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.78 E-value=3.8e-16 Score=162.06 Aligned_cols=228 Identities=18% Similarity=0.081 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhH
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNL 114 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 114 (525)
++..|++++.++|..++++...+...+|..+.+.+|++++++++.+..+.++....+..+++++..|.+++.++++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999999999999999999999885559999999999999998876345677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhH
Q 048788 115 LGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQ----NEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLP 189 (525)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 189 (525)
.++.++.+..+...++++..++ +.+++++..++.. +++....+..++++++++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999998876 8888999887754 5677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhh
Q 048788 190 LTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPS 269 (525)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~ 269 (525)
+++.+....++|++++++++.. +|+.|+++|+.+++.+..++..++.+|+... ....+..+++.+...+.
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~as 448 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKG--------ILPFGVLKVLAKLVIAS 448 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CCchHHHHHHHHHHHHH
Confidence 9999999999999999988764 7999999999999999998887776543211 11234455555555544
Q ss_pred HHH
Q 048788 270 CIS 272 (525)
Q Consensus 270 ~l~ 272 (525)
.++
T Consensus 449 ~~m 451 (502)
T TIGR01695 449 AII 451 (502)
T ss_pred HHH
Confidence 444
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.77 E-value=9.5e-17 Score=157.98 Aligned_cols=194 Identities=18% Similarity=0.167 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 048788 268 PSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSC 347 (525)
Q Consensus 268 p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 347 (525)
|.+++++...+...+++.+++++++ +++++++.+.++..+...+..+++++..|.+++++|++|++++++..+.+.++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 7788999999999999999999865 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHH
Q 048788 348 SFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFP 427 (525)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 427 (525)
..+++++.+++++++++++..+++.|++..+.+..++++.+++.++.++.....+++++.||++.....++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999987 77888
Q ss_pred HHHHHHH-HhC-CCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 428 VAVWLAF-YMG-FDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 428 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
..+.+.. ..+ +|+.|+++++.+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887776 555 779999999999999988887766665
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=2e-18 Score=150.27 Aligned_cols=162 Identities=22% Similarity=0.324 Sum_probs=157.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 048788 268 PSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSC 347 (525)
Q Consensus 268 p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 347 (525)
|.+++++.+.+.+.+++.+++++++ +++++++++.++..+...+..+++++..+.+|+++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~--~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGP--EALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTT--CCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 8899999999999999999999966 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHH
Q 048788 348 SFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFP 427 (525)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 427 (525)
.++++++.++++.++++++..+|+.|+|+.+.+..++++..++.++..+.....+++++.||++.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 048788 428 VAVW 431 (525)
Q Consensus 428 ~~~~ 431 (525)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.72 E-value=1.7e-14 Score=146.01 Aligned_cols=206 Identities=16% Similarity=0.122 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhH
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNL 114 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 114 (525)
++..|++++...|.+++.....+..++|+.+.+++++.++++++.+..+.++....+...+++...|..|+...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 35689999999999999999999999999999999999999999999999998677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhH
Q 048788 115 LGLALQKTILLLMFTSIPISLL-WLNMKNILLFCG----QNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLP 189 (525)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 189 (525)
.++.+++++.....+.+++++. +.+++++++.+. .+.+-.+.....+++++++.|+..+...+...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999876 899999998663 36667788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 048788 190 LTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISK 242 (525)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~ 242 (525)
++..++++.++|++++.+++.. +|..|.++|+.++..+..++++++++|+.
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999888865 89999999999999999999877776553
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.69 E-value=1.4e-17 Score=144.91 Aligned_cols=160 Identities=24% Similarity=0.373 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 048788 47 PMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLL 126 (525)
Q Consensus 47 p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 126 (525)
|.++++++..+...+|+.+++++|++++++++++.++.++. ..+..|++.|..+.++|++|++|+++.++.++.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHHHH
Q 048788 127 MFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSI-LLHIPI 204 (525)
Q Consensus 127 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 204 (525)
..++++..++ +.+.+++..+++.++++.+.+.+|+++..++.++..+.....+++++.||++..++.++.+. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999887 88888999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred HHH
Q 048788 205 NYF 207 (525)
Q Consensus 205 ~~~ 207 (525)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.68 E-value=8.5e-15 Score=151.44 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh---------HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGEL---------ALAGG-SLAVGFANITGYSILSGLAMGMEPIC 103 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~---------~~~~~-~~~~~i~~~~~~~~~~gl~~~~~~~~ 103 (525)
++..|++++.++|.+++++...+...+|+.++++ +++. .+|.+ +.+.++..+. ..+..+++.+..|.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999998 6432 22222 3455666766 677888999999999
Q ss_pred HhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 048788 104 GQAFGAQRHNLLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLR 182 (525)
Q Consensus 104 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 182 (525)
++.+|++|+++.++..++...+...++++..++ ..+.+++..++..++ .+.+++++++++.++..+.....+.++
T Consensus 300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~ 375 (488)
T TIGR02900 300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQ 375 (488)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988876 788888888776443 356789999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 048788 183 SQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIII 240 (525)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~ 240 (525)
+.||++..++.+++..++|++++++++...++|+.|+++++++++++..++..++.+|
T Consensus 376 ~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 376 GLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988874445899999999999999999888776653
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.65 E-value=1.4e-12 Score=130.10 Aligned_cols=206 Identities=16% Similarity=0.066 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHH
Q 048788 36 REAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLL 115 (525)
Q Consensus 36 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 115 (525)
...|++.+...|..++...+++..++|+.+.+.+.+...+.+..+..++++..-.+..++++...|.+||...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 78899999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHH
Q 048788 116 GLALQKTILLLMFTSIPISLL-WLNMKNILLFCG----QNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPL 190 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 190 (525)
++....++.+..++.++.+++ ..+++|+.+.+. .+++-.......++.+.++.++..+..++...+.+.+++|.+
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999987 899999998653 255566777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 048788 191 TFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKV 243 (525)
Q Consensus 191 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~ 243 (525)
+.+.+++.++|+++++.+... +|..|.++++.++.+++..++++..+|+..
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999777655 788889999999999999888777765543
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.64 E-value=6.3e-13 Score=124.63 Aligned_cols=247 Identities=17% Similarity=0.230 Sum_probs=181.1
Q ss_pred HHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 048788 57 SRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISL 135 (525)
Q Consensus 57 ~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (525)
..+++..++++| +|++++|.++....+..+.......|+...... ..++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999 999999999999999998855556777666554 23456666666666666554444444433
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 048788 136 LWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLG 215 (525)
Q Consensus 136 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 215 (525)
+ ...+..+++ +++. ..++....+..++..........+++.+|.+......+...+...++..++.. .+.+
T Consensus 77 ~---~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFFG-DPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHhC-ChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 112222333 3322 23455666778888999999999999999999999999998888555444444 3458
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhH
Q 048788 216 IKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRA 295 (525)
Q Consensus 216 i~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~ 295 (525)
..+..++..+++++..+..+...+++ .+. +++.+..| .++.+.|..+..+........+..+++.+. |.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK--LRL------SFKFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cCC------CchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 88888998888888877665433211 111 11233334 799999999999999999999999999955 569
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 048788 296 TIASMGILIQTTSLIY-IFPSSLSFSVSTRVGN 327 (525)
Q Consensus 296 ~~a~~~~~~~i~~~~~-~~~~~~~~~~~~~~s~ 327 (525)
++|.|+++.++..... .+..++++...|.+++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999887 8999999999999886
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.63 E-value=1.7e-12 Score=134.18 Aligned_cols=200 Identities=17% Similarity=0.120 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChh
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHN 113 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 113 (525)
++..|++++++.|.+.+++...+...+|+.++++ +|++++|.|+.+..+.++....+...++....|.+++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4668999999999999999999999999999999 99999999999999988764455556777788888885 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 048788 114 LLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTF 192 (525)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 192 (525)
+.++.+...+.+...+++++.++ ..++++++.++.+++ +..+...++++.+...+..........+++.||++....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 99999999999999999998876 788888887665444 567788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 048788 193 CATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIII 240 (525)
Q Consensus 193 ~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~ 240 (525)
.+++..+++++..+.+.. .+|+.|+++++.+++.+...+..++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888876665554 4799999999999999988887666633
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.60 E-value=5.9e-13 Score=134.47 Aligned_cols=198 Identities=11% Similarity=0.023 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChh
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHN 113 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 113 (525)
++..|++++.+.|..++++...+...+|+.++++ +|++++|.|+.+..+...+...+..+++++..|.++++ +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 5678999999999999999999999999999986 99999999999999977443688899999999999995 5778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 048788 114 LLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTF 192 (525)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 192 (525)
+.++.++..+.....++++..++ ++++++++.++..++ ++.+.++++++.++.++..........+...++.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999988888888766 788999998887654 444677888888888888887777777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 048788 193 CATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYII 239 (525)
Q Consensus 193 ~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~ 239 (525)
..+...+++++++++++.. +|..|+++++.+++.+...+..+...
T Consensus 366 ~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999998876 89999999999999999988765554
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.54 E-value=4.4e-12 Score=130.84 Aligned_cols=198 Identities=23% Similarity=0.281 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCh
Q 048788 34 AIREAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRH 112 (525)
Q Consensus 34 ~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 112 (525)
.++..|++++.++|..++.+...+.+.+|+.++++ +|++++|.|+.+..+.... ..+...++....|.+++.+.++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46899999999999999999999999999999999 9999999999888888887 788889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHH
Q 048788 113 NLLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLT 191 (525)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 191 (525)
++.++..++++.+...++++..++ ..+.+++...+..++ +..+...+.++.+..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999887 888888887665544 22367788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 048788 192 FCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYI 238 (525)
Q Consensus 192 ~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~ 238 (525)
....++.++|++++++++.. +|+.|++.++ .+ .........+.
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~-~~~~~~~~~~~ 407 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS-VIALALLLFYI 407 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH-HHHHHHHHHHH
Confidence 99999999999999999875 7899999999 44 33333333333
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.34 E-value=4.5e-09 Score=107.31 Aligned_cols=419 Identities=12% Similarity=0.031 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhhhcCCChhHHHHHHH
Q 048788 43 KIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFA-NITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQ 120 (525)
Q Consensus 43 ~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~-~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 120 (525)
+.+--.++.|++..+.+++-+.++-| ++|+.+|..++=..+. +.+.+..-.++-.+..+.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45567788999999999999999999 9999999885444333 222245556666665543332211223333434333
Q ss_pred HHHHHHHHHHHHHHHHHH--hhHH----HHHHcC-CCHH---HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHcCC
Q 048788 121 KTILLLMFTSIPISLLWL--NMKN----ILLFCG-QNED---IATVAQSYLFYSLPDLLAQSLLHPL----RIYLRSQAI 186 (525)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~--~~~~----i~~~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~ 186 (525)
....+..+++++...+++ ...+ ...+.. ..++ ..+.....+.+...+.....+...+ +..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333344444443222211 1111 111111 1111 1222333344455555555554444 444444445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-cCCCc-----c-hhHHHHHHHHHHHHHHHHHHHHh-hhhchhcc----CCCCh-
Q 048788 187 TLPLTFCATLSILLHIPINYFLVTQ-LNLGI-----K-GVALSGVWTNFNLVASLIIYIII-SKVYQKTW----GGFSM- 253 (525)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~li~~-~~~gi-----~-g~a~a~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~- 253 (525)
.+.-........+.+..+..+.... .+++. . -+.++..++++...+........ .......+ .+...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 5555555555555554433333211 01111 1 12455556665554433221111 11111111 11111
Q ss_pred --hhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 048788 254 --DCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGY--LLNPRATIASMGILIQTTSLI-YIFPSSLSFSVSTRVGNE 328 (525)
Q Consensus 254 --~~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~~~i~~~~-~~~~~~~~~~~~~~~s~~ 328 (525)
...-.-+++++.........+...+...-+.+++.. +. ..++-|.|++++++.+++ ..+...+-.+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~-t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLL-TFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccC-CHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011124788999999999999999999999999888 66 479999999999999886 556678888888888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 048788 329 LGANQP---------KKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTT 399 (525)
Q Consensus 329 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 399 (525)
...++. ++..+.....+++...+++.+..+-...++.+..++.++.-....+...++.++...++.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765433 44667778888888888888888888888888888876554344578899999999999999999
Q ss_pred HHHHhhccCCcchhHHHHHH---HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 400 GCGVLRGTARPKVGANINLG---CFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 400 ~~~~l~~~g~~~~~~~~~~~---~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
...+.++...++.....+-. .. ++.+..++++... ++|..|..+|..+.+.++.+.+..+.++
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887655444332 22 4556667777665 7899999999999999999988887765
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.30 E-value=2.2e-10 Score=115.22 Aligned_cols=206 Identities=15% Similarity=0.084 Sum_probs=189.8
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCh
Q 048788 256 FKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSL-IYIFPSSLSFSVSTRVGNELGANQP 334 (525)
Q Consensus 256 ~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~-~~~~~~~~~~~~~~~~s~~~g~~~~ 334 (525)
..+.|++.+++.|..+....+.....+...++|++|+ .++++.+++.+..+. .+.+..++..+..+..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 6888999999999999999999999999999999986 799999999888776 4778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhH
Q 048788 335 KKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGA 414 (525)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 414 (525)
+.......++.......+++.+ .++.+.+++...+.+|+++...+..|.++.....+.......+..++|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999988888888887 466666999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 048788 415 NINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKT 465 (525)
Q Consensus 415 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 465 (525)
+.+.+.. ++++++.+++.+..++|..|++.+..+++.........+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999987 8999999999999999999999999999999888877766654
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.1e-06 Score=84.10 Aligned_cols=415 Identities=13% Similarity=0.037 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCC---
Q 048788 36 REAISIAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQR--- 111 (525)
Q Consensus 36 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~--- 111 (525)
+...+-.+.+.-.+..|++..+.+++-+.++-| ++++.+|..++-..+.+-. ..-++--..++.....|..+
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT----iLFlsREair~A~l~~gs~~~d~ 80 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST----ILFLSREAIRLAELRIGSEPADT 80 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH----HHHhhHHHHHHHhccCCCCCCcc
Confidence 345556677778888899998888888888888 9999999887655544321 11222222233333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHH
Q 048788 112 HNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNED-IATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPL 190 (525)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 190 (525)
..+..+..+.+.-+...+.+...-+|+-... ..++. ..+.-..-+.+...+.....+...+.-..|..-+.+..
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~-----s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~ 155 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYFWLGFLS-----SSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLR 155 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHhh-----ccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4456666666655555555554433211110 01111 11222222344444555555555555555555566666
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH-----HHHHHHhhhhc-------hhc--cCCC-Chh
Q 048788 191 TFCATLSILLH-IPINYFLVTQLNLGIKGVALSGVWTNFNLVAS-----LIIYIIISKVY-------QKT--WGGF-SMD 254 (525)
Q Consensus 191 ~~~~~~~~~~~-i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~-----~~~~~~~~~~~-------~~~--~~~~-~~~ 254 (525)
.....+...+. ++...+++.+.++ -+..+..+++....+. .+.|+..++.. +.. .++. .++
T Consensus 156 ~i~e~l~~~v~~i~~fa~lv~~~~~---~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~ 232 (530)
T KOG2864|consen 156 AIAEGLATIVKCIVLFAGLVMGPNM---YALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENE 232 (530)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCch---hHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCC
Confidence 66666666555 3333333332221 3334444444443322 22233323311 000 0000 010
Q ss_pred -hHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcC
Q 048788 255 -CFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLN-PRATIASMGILIQTTSLI-YIFPSSLSFSVSTRVGNELGA 331 (525)
Q Consensus 255 -~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~i~~~~-~~~~~~~~~~~~~~~s~~~g~ 331 (525)
..-.-++..+.-.......+..++...-+..+++.... ...+-|.|.++++..+++ ..+...+-.......++....
T Consensus 233 ~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~ 312 (530)
T KOG2864|consen 233 RGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSR 312 (530)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhc
Confidence 00122345555555556666666666666666553321 235778899999988774 566678888888888888877
Q ss_pred CChHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccC
Q 048788 332 NQPKKAKLA---AIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTA 408 (525)
Q Consensus 332 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 408 (525)
++.|+.|+. ....++....+++....+-...++.+..+++++.-.-..+...++++++..++.+++.+..++..+.+
T Consensus 313 ~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~ 392 (530)
T KOG2864|consen 313 DNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVA 392 (530)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 766666554 45566666666766666667778888888877553334466889999999999999999999999988
Q ss_pred CcchhHH---HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 048788 409 RPKVGAN---INLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKT 465 (525)
Q Consensus 409 ~~~~~~~---~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 465 (525)
..+..-. ..++.. +..+..++++... +|..|..+|..+.+.++.+....+.++.
T Consensus 393 t~~qi~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 393 TSRQIDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred cHHHHHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665432 222323 5667788998877 6889999999999998877776665553
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.02 E-value=1.7e-06 Score=79.30 Aligned_cols=267 Identities=12% Similarity=0.042 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCC
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGR-L-GE-LALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQR 111 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-l-g~-~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 111 (525)
...++++.++-.|..++.+...+...+-+.-++| . .+ +.+++|+++..+.-++ ..+...+......++ +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cch
Confidence 4678899999999999999999999888888887 3 23 3599999999998887 666666655544443 333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhH-HHH-HHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChh
Q 048788 112 HNLLGLALQKTILLLMFTSIPISLL-WLNMK-NIL-LFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITL 188 (525)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 188 (525)
+++.+.+... ...+.+..++..++ +--.. .++ ..++.++++.+.++..+.++.+..++.++...+++++.-.+++.
T Consensus 81 rsrr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 3333323222 22222222222222 32222 233 57789999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhH---HHHHHHHHHHH-HHHHHHHHhhhhchhccCCCChhhHHHHHHHH
Q 048788 189 PLTFCATLSILLHIPINYFLVTQLNLGI-KGVA---LSGVWTNFNLV-ASLIIYIIISKVYQKTWGGFSMDCFKECKTLL 263 (525)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~li~~~~~gi-~g~a---~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 263 (525)
.....++...+..+++..+++.. +... ..+. ++...+..+-+ ++.+-|...-....+......+.+...+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 77777776666666665555532 1111 1122 22222222211 12222221111112222233345567889999
Q ss_pred HhHhhhHHHHHHHHHHHHHHHHHHhhcCChh----HHHHHHHHHHHHHHH
Q 048788 264 NLAIPSCISVCLEWWWYEIMILLCGYLLNPR----ATIASMGILIQTTSL 309 (525)
Q Consensus 264 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~----~~~a~~~~~~~i~~~ 309 (525)
++.+|.+...........+.+.++++...|. ++++...+.+.+.-.
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~ 288 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHM 288 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcC
Confidence 9999999999999999999999999943343 556665555544433
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.42 E-value=3.4e-05 Score=65.36 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=72.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 048788 161 LFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIII 240 (525)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~ 240 (525)
+++++++.++..+.....+.+++.||++.....++++.++|++++++++.. +|..|+++|+.+++.+..++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999765 899999999999999999888777765
Q ss_pred hh
Q 048788 241 SK 242 (525)
Q Consensus 241 ~~ 242 (525)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 43
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.24 E-value=0.00045 Score=71.14 Aligned_cols=203 Identities=11% Similarity=0.057 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCh--
Q 048788 38 AISIAKIALPMILTGLLLYSRSMISVLFLGR---LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRH-- 112 (525)
Q Consensus 38 ~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 112 (525)
-+++.+++.....+.+.-.+.+=-|..++.. .+.++.|.|+++..+-+++.=.+..-+--..-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3677888888999999999999999999998 56779999999999888876666667778877888887755433
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 048788 113 -------NLLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQ 184 (525)
Q Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 184 (525)
++..+.+...+.+...+++++..+ ...++.++.++++++=..+.+...+++.+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 456677888888888888887766 777777887775443333345677888899999999999999999998
Q ss_pred CChhHHH---HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 048788 185 AITLPLT---FCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIIS 241 (525)
Q Consensus 185 ~~~~~~~---~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~ 241 (525)
...+... ....+..++.+..+++++.. ++|..|..+|+++...+-.+..+.++.+.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765444 44445556667777888876 79999999999999999988887777543
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.16 E-value=0.00031 Score=66.29 Aligned_cols=188 Identities=18% Similarity=0.140 Sum_probs=116.5
Q ss_pred HhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 048788 264 NLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIF-PSSLSFSVSTRVGNELGANQPKKAKLAAI 342 (525)
Q Consensus 264 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~~ 342 (525)
|-+......+....+...+...++.+.. |+++.|.|+....+..+...+ ..|++++..-..++...+ .+..+....
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3444555666666666666677777776 679999999999999888776 578888888777765432 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHH
Q 048788 343 VGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFY 422 (525)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 422 (525)
.......+..+.... .. .+...+..++ . ...+........++.........++++.++.+......+...
T Consensus 80 ~~~~~~~~~~~i~~~-~~----~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLL-IL----LIASFFGNPS-L---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHH-HH----HHHHHcCCch-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333333322222222 22 2212333332 1 122222222222577788888999999999999988888876
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 048788 423 IVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKT 465 (525)
Q Consensus 423 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 465 (525)
+..+...+.+... ..+..+..++..++..+..++..+..+|.
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333 33588888999999888877777776653
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.00 E-value=0.0019 Score=60.21 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=108.7
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048788 281 EIMILLCGYLLNPRATIASMGILIQTTSLIYIFP-SSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFA 359 (525)
Q Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (525)
.....++++.. |+++.|.|+....+..+...+. .++.+...- ..+++.++.++..+.......+..++..++.
T Consensus 5 f~~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PF13440_consen 5 FLFLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILA 78 (251)
T ss_pred HHHHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666 5799999999999988887764 445444322 2345666677776666655454444444332
Q ss_pred HHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048788 360 ASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFD 439 (525)
Q Consensus 360 ~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g 439 (525)
..... .+ ++++ ...++.+..+..++..........+++.+|.+......+... +..+.....+... +.+
T Consensus 79 ~~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 79 ILIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLN 147 (251)
T ss_pred HHHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-Hhh
Confidence 22222 33 3332 345566677778888899999999999999999999988876 3443333333332 338
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 048788 440 FEGLWLGLLAAQGSCVVTMLVVLG 463 (525)
Q Consensus 440 ~~G~~~a~~~~~~~~~~~~~~~~~ 463 (525)
..+..++..++..+..+......+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888999988888887766555433
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.95 E-value=5.6e-05 Score=64.08 Aligned_cols=79 Identities=18% Similarity=0.074 Sum_probs=72.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 048788 384 LPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLG 463 (525)
Q Consensus 384 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 463 (525)
+++++++.++.++....+.++++.||+|..++.++.+. ++++++.+.+. +++|..|+++|+.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999987 89999999884 4589999999999999999998888887
Q ss_pred cC
Q 048788 464 KT 465 (525)
Q Consensus 464 ~~ 465 (525)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.89 E-value=0.0095 Score=55.31 Aligned_cols=161 Identities=11% Similarity=0.027 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 048788 255 CFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNP-RATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQ 333 (525)
Q Consensus 255 ~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~ 333 (525)
.....+++.++-.|..++.....+.-.+.+.-+++-.+. .+.+|+|+++..+.-++..+...+-+.....+.. +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 456788999999999999999999999998888874332 3569999999999999999998888876665543 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-hhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcc
Q 048788 334 PKKAKLAAIVGLSCSFMLGFSALFF-AASV-RKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPK 411 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 411 (525)
.++ ++........+++......++ .-.+ .-.+.+++.-++++.+.+...+.++.+..+++++.....+++.=..++.
T Consensus 81 rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 222 222222222222221111111 1111 2234556677899999999999999999999999999998888667777
Q ss_pred hhHHHHHHHH
Q 048788 412 VGANINLGCF 421 (525)
Q Consensus 412 ~~~~~~~~~~ 421 (525)
.....++...
T Consensus 160 iV~~aSI~~v 169 (345)
T PF07260_consen 160 IVGSASIADV 169 (345)
T ss_pred EeehHHHHHH
Confidence 7666666653
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.018 Score=56.02 Aligned_cols=198 Identities=9% Similarity=0.046 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHHH-
Q 048788 41 IAKIALPMILTGLLLYSRSMISVLFLG--R-LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLG- 116 (525)
Q Consensus 41 i~~~~~p~~~~~~~~~~~~~v~~~~i~--~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~- 116 (525)
..+......-+.++-.+.+==|.++++ . ++-++.|.|.++...-+++.=.+...+.-..-...+|...++++|+.+
T Consensus 241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~ 320 (530)
T KOG2864|consen 241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence 344444444555556666666677776 3 666788888888777776655666667777777888877766655554
Q ss_pred --HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhH---H
Q 048788 117 --LALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLP---L 190 (525)
Q Consensus 117 --~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~ 190 (525)
.++...+.+...+|.++..+ ...+...+.+.++++=....+...+++.+..+|+.+++.+..++..+.+..+. .
T Consensus 321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~ 400 (530)
T KOG2864|consen 321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH 400 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence 45666666666777666555 66677777777665433444557789999999999999999999998876543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 048788 191 TFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIII 240 (525)
Q Consensus 191 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~ 240 (525)
.....+..+...+++++++-. +|..|..+|+++...+-.+..+.++++
T Consensus 401 n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 401 NKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred ccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567778888888877 666888888887777776666555543
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.98 E-value=0.36 Score=46.08 Aligned_cols=337 Identities=13% Similarity=0.047 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 048788 87 TGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLP 166 (525)
Q Consensus 87 ~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 166 (525)
+...+..|+....++.+|...=++|.+++..-+.-...+....+.++..+.+ ....+.... |=.....
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si~-----yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSIV-----YKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhHH-----HHHHHHH
Confidence 3355667788888888888877777777665554444444444444432211 111121111 1112333
Q ss_pred hHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 048788 167 DLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQK 246 (525)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 246 (525)
.....+..-+...++.+.+|.+.....-.++.++..++..++-. .++.|..++..++..+..++...+..|.-+.++
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 44555666667888999999999999999999888888776654 589999999999999999888888765432211
Q ss_pred ccCCCChhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHH------HHHHHHHHHHHHHHHH-----H
Q 048788 247 TWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIA------SMGILIQTTSLIYIFP-----S 315 (525)
Q Consensus 247 ~~~~~~~~~~~~~k~il~~~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a------~~~~~~~i~~~~~~~~-----~ 315 (525)
. ..+ +. -...+--...++..+..++.-.+++.+.-..++|..-.+ .|.+..-...+...|. .
T Consensus 217 ~-i~F---dF---L~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 217 R-IGF---DF---LLYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred c-cce---eh---hhhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 1 111 10 111112223344455566666666655433332111111 1222222222222222 2
Q ss_pred HHHHHHHHHHHhhh----cCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHH
Q 048788 316 SLSFSVSTRVGNEL----GAN-------QPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVL 384 (525)
Q Consensus 316 ~~~~~~~~~~s~~~----g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 384 (525)
.+-+.+.+.--+.+ |.+ +.++.....++.+.-..-+....++.+.+.++.+...++-++ ...+.+
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF 365 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLF 365 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHH
Confidence 23333333322222 112 334455556666666666777788888888998888776653 234455
Q ss_pred HHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHH
Q 048788 385 PIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFY-MGFDFEGLWLGLLAA 450 (525)
Q Consensus 385 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g~~G~~~a~~~~ 450 (525)
++-.++...+.....+-++.--..+.+..+..+..-. ..|..+.++.... +.+-..|...|..+.
T Consensus 366 ~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~ 431 (467)
T COG4267 366 YVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLY 431 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHH
Confidence 5555555555555555555555666666666555443 4555555554432 223334444444333
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=83.42 E-value=47 Score=32.42 Aligned_cols=137 Identities=12% Similarity=-0.027 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHH
Q 048788 311 YIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLC 390 (525)
Q Consensus 311 ~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~ 390 (525)
..+..+++...+-.+|...=+||++++...+.-+..+....+..++.++... .++. ...+-...+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~-----si~yk~l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQY-----SIVYKILACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCch-----hHHHHHHHHHH
Confidence 3445667777777778777778888888888777766666665555322111 2222 12222233444
Q ss_pred HhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 048788 391 ELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGK 464 (525)
Q Consensus 391 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 464 (525)
.+..+...+...++.+++|.+.....-.++. ++.+.++.++-. .+..|..++..++..+.......+..|
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5566677788888999999888777777765 566666666544 589999999999987766655544433
No 47
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=70.22 E-value=94 Score=28.97 Aligned_cols=35 Identities=6% Similarity=0.114 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 048788 308 SLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAI 342 (525)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~ 342 (525)
+....+...+...+....=++..++|++++++...
T Consensus 107 ~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 107 QVLTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 33444555666677777777788889888876543
No 48
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=68.70 E-value=1.5e+02 Score=30.70 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHHHHHHH
Q 048788 172 SLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQL----NLGIKGVALSGVWTNFNLVASLII 236 (525)
Q Consensus 172 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~----~~gi~g~a~a~~~~~~~~~~~~~~ 236 (525)
+...+++..++..++.....+......+.++....+-.... +.+..|--+..++.-+++....++
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence 44456788888888888888888777777776665544322 245666666677766666665543
No 49
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=63.72 E-value=1.9e+02 Score=30.18 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC-hhHHHHHHHHHHHHHHH
Q 048788 39 ISIAKIALPMILTGLLLYSRSMISVLFLGR-LG-ELALAGGSLAVGFANIT 87 (525)
Q Consensus 39 ~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg-~~~~~~~~~~~~i~~~~ 87 (525)
|.+..+.....++++...+....-.+++.+ -+ +..+|.+..+..+..++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~L 60 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILL 60 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345556677788888888888888888888 33 33566666665555544
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=55.97 E-value=70 Score=23.67 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 048788 315 SSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFS 354 (525)
Q Consensus 315 ~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 354 (525)
.-++...+..+-..+.++|++++++..+++.+++.+-.+.
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 4445555667788888999999999999988887654433
No 51
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=54.54 E-value=2.6e+02 Score=28.69 Aligned_cols=52 Identities=8% Similarity=-0.020 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--hhHHHHHHHHHHHHHHH
Q 048788 36 REAISIAKIALPMILTGLLLYSRSMISVLFLGR-LG--ELALAGGSLAVGFANIT 87 (525)
Q Consensus 36 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg--~~~~~~~~~~~~i~~~~ 87 (525)
-..|+-...+.+-+..++.....+.--..+-.. .| +...|..=+...+...+
T Consensus 9 Ls~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi 63 (467)
T COG2211 9 LSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI 63 (467)
T ss_pred ccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 456777888888888877777777766666666 44 33444444444444444
No 52
>PRK03612 spermidine synthase; Provisional
Probab=50.45 E-value=3.2e+02 Score=28.57 Aligned_cols=31 Identities=6% Similarity=-0.033 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cChhHHHH
Q 048788 46 LPMILTGLLLYSRSMISVLFLGR-LGELALAG 76 (525)
Q Consensus 46 ~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~ 76 (525)
+-.+++......+..+-.-+++. +|...++.
T Consensus 21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~ 52 (521)
T PRK03612 21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQF 52 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 34556677777777777777777 66654443
No 53
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=49.64 E-value=1.7e+02 Score=28.97 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHH
Q 048788 425 GFPVAVWLAFYMGFDFEGLWLGLLAA 450 (525)
Q Consensus 425 ~i~~~~~l~~~~~~g~~G~~~a~~~~ 450 (525)
.+++.++...+ |-.|..+.....
T Consensus 108 ~lglpi~~~l~---g~~~~~~~~~~~ 130 (385)
T PF03547_consen 108 FLGLPILQALF---GERGVAYAIIFD 130 (385)
T ss_pred hhHHHHHHHHh---cchhhhhehHHH
Confidence 33444443333 445555444333
No 54
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=48.57 E-value=3.2e+02 Score=28.02 Aligned_cols=15 Identities=0% Similarity=-0.017 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhhcC
Q 048788 317 LSFSVSTRVGNELGA 331 (525)
Q Consensus 317 ~~~~~~~~~s~~~g~ 331 (525)
++....-.++..+++
T Consensus 303 ig~~~~G~lsDr~~~ 317 (476)
T PLN00028 303 FARPAGGYLSDVAAR 317 (476)
T ss_pred HHHhhhHHHHHHHHH
Confidence 333333344544443
No 55
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=47.31 E-value=2.8e+02 Score=27.05 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048788 336 KAKLAAIVGLSCSFMLGFSALFFAAS 361 (525)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (525)
+..+..++-++......+|......+
T Consensus 120 ~~~~~~r~~l~~~~~~~~pl~~~~~~ 145 (340)
T PF12794_consen 120 ERVQRLRRQLRWLIWVLVPLLFISIF 145 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555444333
No 56
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=43.08 E-value=2.8e+02 Score=25.72 Aligned_cols=84 Identities=6% Similarity=-0.083 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcc
Q 048788 332 NQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPK 411 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 411 (525)
+..+..++....+..++....+.=++..+.+++ ..++.++.+........++. .-+.++..++......-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~-~~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWF-ISSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHH-HHHHHHHHHHHHHHHHHhcccccc
Confidence 344555555555555555555555555555555 45555555555554444443 333444444444444455566666
Q ss_pred hhHHHHH
Q 048788 412 VGANINL 418 (525)
Q Consensus 412 ~~~~~~~ 418 (525)
.|.+-++
T Consensus 186 LPar~SF 192 (261)
T PF10160_consen 186 LPARPSF 192 (261)
T ss_pred CCCCccH
Confidence 6655444
No 57
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=38.10 E-value=4.2e+02 Score=26.36 Aligned_cols=18 Identities=11% Similarity=-0.056 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048788 444 WLGLLAAQGSCVVTMLVV 461 (525)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~ 461 (525)
..+....+++..+.....
T Consensus 147 ~a~~aaDnv~~~~~~~~l 164 (378)
T PF05684_consen 147 AAALAADNVVMALWFAFL 164 (378)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555544444333
No 58
>PRK11663 regulatory protein UhpC; Provisional
Probab=37.39 E-value=4.4e+02 Score=26.46 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=11.3
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 048788 438 FDFEGLWLGLLAAQGSCVV 456 (525)
Q Consensus 438 ~g~~G~~~a~~~~~~~~~~ 456 (525)
.|..++++...+...+..+
T Consensus 400 ~g~~~~f~~~~~~~~~~~~ 418 (434)
T PRK11663 400 WHWTGFFVVISIAAGISAL 418 (434)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 5777776666555555443
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.78 E-value=46 Score=26.77 Aligned_cols=9 Identities=33% Similarity=0.877 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 048788 442 GLWLGLLAA 450 (525)
Q Consensus 442 G~~~a~~~~ 450 (525)
|+.+|.+++
T Consensus 68 ~Ii~gv~aG 76 (122)
T PF01102_consen 68 GIIFGVMAG 76 (122)
T ss_dssp HHHHHHHHH
T ss_pred ehhHHHHHH
Confidence 333333333
No 60
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=34.75 E-value=7.9e+02 Score=28.60 Aligned_cols=32 Identities=6% Similarity=-0.116 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 048788 173 LLHPLRIYLRSQAITLPLTFCATLSILLHIPI 204 (525)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 204 (525)
....+...+...++.+...+.+....+..++.
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~ig 160 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLG 160 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHH
Confidence 33445555666666666666666555544443
No 61
>PF14184 YrvL: Regulatory protein YrvL
Probab=34.03 E-value=2.7e+02 Score=22.90 Aligned_cols=108 Identities=11% Similarity=0.145 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048788 121 KTILLLMFTSIPISLLWLNMKNILLFCGQNED-IATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSIL 199 (525)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (525)
......+...++.+...+....+++++|.+=+ ......-.+.....+.|+......+...+.-.+-++.... .....
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHH
Confidence 33444444444444455666677788876422 2223333334446677777777776666666633333332 34567
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 048788 200 LHIPINYFLVTQLNLGIKGVALSGVWTNFNL 230 (525)
Q Consensus 200 ~~i~~~~~li~~~~~gi~g~a~a~~~~~~~~ 230 (525)
+...+++..++..+.=..+..+.+...-+++
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is~~~e~i~a 114 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISISTLSEIIFA 114 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeCcHHHHHHH
Confidence 7777777777654433344444433333333
No 62
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=32.97 E-value=2.9e+02 Score=24.86 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 048788 110 QRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQ 149 (525)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 149 (525)
++++...+.+..++...+++-++.+++..+..++..+++.
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 3445555555556555555555555556666777777764
No 63
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=30.97 E-value=2.1e+02 Score=24.72 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=19.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhh
Q 048788 215 GIKGVALSGVWTNFNLVASLIIYIIIS 241 (525)
Q Consensus 215 gi~g~a~a~~~~~~~~~~~~~~~~~~~ 241 (525)
++.|...++.+++++.+++...|.++-
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 344666778888888888877777643
No 64
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=30.08 E-value=5.7e+02 Score=25.51 Aligned_cols=26 Identities=8% Similarity=-0.121 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHH
Q 048788 446 GLLAAQGSCVVTMLVVLGKTDWEFEA 471 (525)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (525)
+......+..+....++++.+++.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
T PRK15403 378 PFHLLAVVAGVIVVFTLAGLLNRVRQ 403 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333333334444444443333333
No 65
>PRK09546 zntB zinc transporter; Reviewed
Probab=29.38 E-value=1.5e+02 Score=28.60 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 048788 415 NINLGCFYIVGFPVAVWLAFYMGFDF---------EGLWLGLLAAQGSCVVTMLVVLGKTDW 467 (525)
Q Consensus 415 ~~~~~~~~~~~i~~~~~l~~~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 467 (525)
+.++++ .+.+|..++-..+ +++. .|.+ ..++..++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiy-GMNf~~mPel~~~~gy~-~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLF-GVNLGGIPGGGWPFGFS-IFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhh-ccccCCCCCcCCcchHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 444555 3555776665543 2222 2333 3333344555566677888777
No 66
>PRK10429 melibiose:sodium symporter; Provisional
Probab=25.08 E-value=7.4e+02 Score=25.22 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC
Q 048788 38 AISIAKIALPMILTGLLLYSRSMISVLFLGR-LG 70 (525)
Q Consensus 38 ~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg 70 (525)
.++-+.++.+-+..++........-..+... +|
T Consensus 5 ~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~G 38 (473)
T PRK10429 5 MTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVG 38 (473)
T ss_pred hhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcC
Confidence 4455566677666666666655544555544 44
No 67
>PF13347 MFS_2: MFS/sugar transport protein
Probab=24.35 E-value=7.2e+02 Score=24.81 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC
Q 048788 310 IYIFPSSLSFSVSTRVGNELGANQ 333 (525)
Q Consensus 310 ~~~~~~~~~~~~~~~~s~~~g~~~ 333 (525)
...+...++....+.+++.+|+++
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~ 291 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKK 291 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcccee
Confidence 344445556666677887776543
No 68
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.87 E-value=2.5e+02 Score=26.95 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 048788 411 KVGANINLGCFYIVGFPVAVWLAFYMGFDF---------EGLWLGLLAAQGSCVVTMLVVLGKTDW 467 (525)
Q Consensus 411 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 467 (525)
+..-..++++ .+.+|..++-..+ +++. .|.+++ ....++.++..+++++|++|
T Consensus 256 ~~mk~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~-l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 256 EIMKILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYGYPAV-LIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 3334444554 3555666665443 2222 233333 33334555667777888777
No 69
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=23.83 E-value=1.1e+02 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=2.8
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 048788 459 LVVLGKTDWEFEAQRAKEL 477 (525)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~ 477 (525)
+..+++.++.++..+-.++
T Consensus 27 ~ieYrk~~rqrkId~li~R 45 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDRLIER 45 (81)
T ss_dssp ------------CHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3344444444444443333
No 70
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=23.00 E-value=3.5e+02 Score=20.87 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=12.0
Q ss_pred ccccccccCCCCCCCCCCC
Q 048788 503 EDSLYLLDGNNFDNKSSHH 521 (525)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~ 521 (525)
+++=|+++-|+.+...++.
T Consensus 82 eDDDGFIEDnYI~~~e~~~ 100 (102)
T PF15176_consen 82 EDDDGFIEDNYIQPSEGEE 100 (102)
T ss_pred CCCCccccccCcCcccccc
Confidence 3555677777777665443
No 71
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=22.84 E-value=8.6e+02 Score=25.16 Aligned_cols=40 Identities=15% Similarity=-0.037 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 048788 33 LAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGEL 72 (525)
Q Consensus 33 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~ 72 (525)
+.++.+|.++-..+-.++..+-..++....-.++.+++++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~ 67 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPT 67 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCC
Confidence 3456777777777777777766666666666666664433
No 72
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=21.68 E-value=5.1e+02 Score=22.12 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=42.1
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCCc
Q 048788 321 VSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQD 373 (525)
Q Consensus 321 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 373 (525)
+.-.+.+.++.++.++........++....+..|+...+....+.+.+.+..+
T Consensus 102 f~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~ 154 (183)
T PF01595_consen 102 FGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIE 154 (183)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33455666777888888888888888888888999988888888888888654
No 73
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=21.38 E-value=1e+03 Score=25.45 Aligned_cols=48 Identities=21% Similarity=0.057 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhH-HHHHHHHHH
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELA-LAGGSLAVG 82 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~-~~~~~~~~~ 82 (525)
++..-.+...++-..-..+...+...+...+...+|+.+ .+-++.+..
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~ 88 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWT 88 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHH
Confidence 344444545555555555555555555555444487764 334444433
No 74
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=21.09 E-value=2.8e+02 Score=23.74 Aligned_cols=54 Identities=7% Similarity=-0.131 Sum_probs=31.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 048788 409 RPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKT 465 (525)
Q Consensus 409 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 465 (525)
++...++.+.. ++...-.|++..++.+.+..-++-..+...+++.+..+-++..
T Consensus 16 k~~alfY~nA~---ivS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYkNv 69 (170)
T PF07074_consen 16 KSSALFYGNAL---IVSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYKNV 69 (170)
T ss_pred ccceehhhHHH---HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444433 2334445666777778888777777776666655555544443
No 75
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.36 E-value=80 Score=26.94 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=5.7
Q ss_pred hhccccccccCCC
Q 048788 501 IKEDSLYLLDGNN 513 (525)
Q Consensus 501 ~~~~~~~~~~~~~ 513 (525)
++++|-.+++.|+
T Consensus 148 dedeD~TvFd~~~ 160 (163)
T PF06679_consen 148 DEDEDSTVFDANH 160 (163)
T ss_pred ccccccceeeecc
Confidence 3334444555444
No 76
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=20.01 E-value=9.2e+02 Score=24.42 Aligned_cols=18 Identities=0% Similarity=-0.114 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhhcCC
Q 048788 315 SSLSFSVSTRVGNELGAN 332 (525)
Q Consensus 315 ~~~~~~~~~~~s~~~g~~ 332 (525)
..++.-....++..++.+
T Consensus 307 ~~ig~~~~G~lsDr~g~r 324 (467)
T PRK09556 307 ALVGSLLWGWLSDLANGR 324 (467)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 344555555566555543
Done!