Query 048788
Match_columns 525
No_of_seqs 289 out of 1803
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 23:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 8.5E-49 2.9E-53 400.8 32.1 432 32-466 5-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 2.5E-18 8.7E-23 174.9 17.9 205 35-240 234-445 (460)
3 4aps_A DI-OR tripeptide H+ sym 93.2 7.3 0.00025 38.5 24.7 52 402-454 413-464 (491)
4 3o7q_A L-fucose-proton symport 92.0 9.2 0.00031 37.0 30.8 46 38-83 25-72 (438)
5 1pw4_A Glycerol-3-phosphate tr 91.3 11 0.00038 36.5 33.2 43 38-80 27-70 (451)
6 4ev6_A Magnesium transport pro 26.4 1E+02 0.0036 28.6 6.1 49 415-467 281-338 (339)
7 2k1k_A Ephrin type-A receptor 25.1 53 0.0018 19.4 2.4 14 217-230 14-27 (38)
8 2jwa_A Receptor tyrosine-prote 20.2 1E+02 0.0035 18.8 3.0 6 236-241 33-38 (44)
9 2gfp_A EMRD, multidrug resista 14.0 6.9E+02 0.024 22.6 22.0 259 41-330 2-263 (375)
10 2iub_A CORA, divalent cation t 10.0 1.4E+02 0.0047 28.1 2.5 51 415-467 305-362 (363)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=8.5e-49 Score=400.79 Aligned_cols=432 Identities=22% Similarity=0.370 Sum_probs=399.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCC
Q 048788 32 SLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQR 111 (525)
Q Consensus 32 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 111 (525)
...++..|++++.++|.+++++...+++++|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.+++++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 44578899999999999999999999999999999999999999999999998877 78889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHH
Q 048788 112 HNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLT 191 (525)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 191 (525)
+++.++.+++++.+..+.+++..+++.+.++++.+++.+++..+.+..|++++.++.++..+.....+++++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999987777788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-c---CCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchh-c-cCCCChhhHHHHHHHHHh
Q 048788 192 FCATLSILLHIPINYFLVTQ-L---NLGIKGVALSGVWTNFNLVASLIIYIIISKVYQK-T-WGGFSMDCFKECKTLLNL 265 (525)
Q Consensus 192 ~~~~~~~~~~i~~~~~li~~-~---~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~k~il~~ 265 (525)
..++++.++|+++++++++. + ++|+.|+++++++++.+..++..++.+++++.+. + +.++.+.+++.+|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 6999999999999999999988887766543321 1 223335677889999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 048788 266 AIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGL 345 (525)
Q Consensus 266 ~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~ 345 (525)
|+|.+++++...+...+++.+++++++ +++|+|+++.++.++...+..+++++..|.+++++|++|++++++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999965 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 048788 346 SCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVG 425 (525)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 425 (525)
++...++++.++++.++++++..+|++|+++.+.+..++++++++.++.+++....+++++.||++.+++.++++.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHH----hC-CCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 048788 426 FPVAVWLAFY----MG-FDFEGLWLGLLAAQGSCVVTMLVVLGKTD 466 (525)
Q Consensus 426 i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 466 (525)
+|+.+++... ++ +|..|+|+|+.+++.+..++..++++|..
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 66 89999999999999998887777666644
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.78 E-value=2.5e-18 Score=174.94 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhH
Q 048788 35 IREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNL 114 (525)
Q Consensus 35 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 114 (525)
++..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++.++. ..+..+++++..|.+++.+|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45678999999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 048788 115 LGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFC 193 (525)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 193 (525)
.++..+.++.+...++++..++ +.+.+++..++..|++..+.+..+++++.++.++.++.....+.+++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999999876 888899999888888888999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHh----cC-CCcchhHHHHHHHHHHHHHHHHHHHHh
Q 048788 194 ATLSI-LLHIPINYFLVTQ----LN-LGIKGVALSGVWTNFNLVASLIIYIII 240 (525)
Q Consensus 194 ~~~~~-~~~i~~~~~li~~----~~-~gi~g~a~a~~~~~~~~~~~~~~~~~~ 240 (525)
++++. ++++++++++... .+ +|+.|+++|+.+++++..++..++.+|
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 9999999999876 56 999999999999999998877555543
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=93.15 E-value=7.3 Score=38.50 Aligned_cols=52 Identities=6% Similarity=-0.147 Sum_probs=20.6
Q ss_pred HHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 048788 402 GVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSC 454 (525)
Q Consensus 402 ~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~ 454 (525)
...-...+.......+.... +.......+.....+.+....++......++.
T Consensus 413 ~~~p~~~~g~~~g~~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 413 KLAPKAFNSQMMSMWFLSSS-VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL 464 (491)
T ss_dssp HHTTTTCSSSSTHHHHHHHH-HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33333334444444444433 23333333333333345444444444443333
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=92.04 E-value=9.2 Score=36.96 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChhHHHHHHHHHHH
Q 048788 38 AISIAKIALPMILTGLLLYSRSMISVLFLGRL--GELALAGGSLAVGF 83 (525)
Q Consensus 38 ~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~l--g~~~~~~~~~~~~i 83 (525)
.+.+.....-.++..+.......+...+..++ ++.+.+.......+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 72 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYF 72 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444444445555554455555544444444 44455554433333
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.27 E-value=11 Score=36.45 Aligned_cols=43 Identities=7% Similarity=-0.127 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHH
Q 048788 38 AISIAKIALPMILTGLLLYSRSMISVLFLGR-LGELALAGGSLA 80 (525)
Q Consensus 38 ~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~-lg~~~~~~~~~~ 80 (525)
.+.+.....-.++..............+..+ .++.+.+.....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~ 70 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSG 70 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHH
Confidence 4444444444444444444444444444444 344455544433
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.42 E-value=1e+02 Score=28.59 Aligned_cols=49 Identities=14% Similarity=0.405 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 048788 415 NINLGCFYIVGFPVAVWLAFYMGFDF---------EGLWLGLLAAQGSCVVTMLVVLGKTDW 467 (525)
Q Consensus 415 ~~~~~~~~~~~i~~~~~l~~~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 467 (525)
+.++++ ++.+|..++-..+ +++. .|.|++.. ..++.+++.+++++|++|
T Consensus 281 ~LTiit--~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~~l~-~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 281 ILTMVT--TIFAVPMWITGIY-GMNFSYLPLANNPQGFWLVMA-LMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHH--HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHHHHH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHhhc-cCcCCCCCCccCchHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 444444 4556777765553 2222 34444444 345566667778888887
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.13 E-value=53 Score=19.38 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=5.8
Q ss_pred chhHHHHHHHHHHH
Q 048788 217 KGVALSGVWTNFNL 230 (525)
Q Consensus 217 ~g~a~a~~~~~~~~ 230 (525)
.|..++.+++-.+.
T Consensus 14 AGiVvG~v~gv~li 27 (38)
T 2k1k_A 14 VAVIFGLLLGAALL 27 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 34444444443333
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.16 E-value=1e+02 Score=18.82 Aligned_cols=6 Identities=33% Similarity=0.185 Sum_probs=2.5
Q ss_pred HHHHhh
Q 048788 236 IYIIIS 241 (525)
Q Consensus 236 ~~~~~~ 241 (525)
.|++|+
T Consensus 33 ~~~RRR 38 (44)
T 2jwa_A 33 ILIKRR 38 (44)
T ss_dssp HHHHHH
T ss_pred hheehh
Confidence 444433
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=14.02 E-value=6.9e+02 Score=22.55 Aligned_cols=259 Identities=8% Similarity=-0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChhHHHHH
Q 048788 41 IAKIALPMILTGLLLYSRSMISVLFLGR--LGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLA 118 (525)
Q Consensus 41 i~~~~~p~~~~~~~~~~~~~v~~~~i~~--lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~ 118 (525)
++-...-..+...........-..+..+ .++.+.+.......+...+ ..+..|. .++.+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~-~~~~~g~-------l~dr~g~r~------- 66 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGV-SQLFYGP-------ISDRVGRRP------- 66 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHH-HHTTHHH-------HHTTSCCCC-------
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHhCCch-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048788 119 LQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSI 198 (525)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (525)
.+........+..++..+.+....++ ....+.-...+................++|.+.....+....
T Consensus 67 ---~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 67 ---VILVGMSIFMLATLVAVTTSSLTVLI---------AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL 134 (375)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHhccHHHHH---------HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHHHHHhhhhchhccCCCChhhHHHHHHHHHhHhhhHHHHHHHH
Q 048788 199 LLHIPINYFLVTQLNL-GIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEW 277 (525)
Q Consensus 199 ~~~i~~~~~li~~~~~-gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~l~~~~~~ 277 (525)
+..++...+.-...+. |.....+...+...+..+........+++.+.+..+..+..++..|+ +.-+...+......
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 212 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGN--SGFNCYLLMLIGGL 212 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcC--cchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048788 278 WWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELG 330 (525)
Q Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g 330 (525)
............+.. +..+.-............+...++.......++..+
T Consensus 213 ~~~~~~~~~~~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~ 263 (375)
T 2gfp_A 213 AGIAAFEACSGVLMG--AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS 263 (375)
T ss_dssp HHHHHHHHHCSCSSH--HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=10.05 E-value=1.4e+02 Score=28.11 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 048788 415 NINLGCFYIVGFPVAVWLAFY-------MGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDW 467 (525)
Q Consensus 415 ~~~~~~~~~~~i~~~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 467 (525)
+.++++ .+.+|..++-..+ |..+....++..++..++.++..+++++|++|
T Consensus 305 ~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 305 VLTIIA--TIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHH--HHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHH--HHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
Done!