BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048789
(724 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 368 PREWEHAIEVLRCSASQFSE---SPVCP--RLRTLFLSSNIFHRVNSDFFQSMASLRVLK 422
P++ +L S + SE S + +LR L +S N ++ F+ L L
Sbjct: 16 PKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75
Query: 423 LSYSNPLLFEISKVVSLQHLDLSHSRIERLPI--EFKYLVNLKCLNLEYTY 471
LS++ + V+L+HLDLS + + LPI EF + LK L L T+
Sbjct: 76 LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSNPLLFEISKVVSLQHLDLSHSRIE 450
P+L TL +S+N R+ D FQ+ SL+ L+LS + ++S + SL H ++S++ +
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 205
Query: 451 RLPI 454
L I
Sbjct: 206 TLAI 209
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSNPLLFEISKVVSLQHLDLSHSRIE 450
P+L TL +S+N R+ D FQ+ SL+ L+LS + ++S + SL H ++S++ +
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199
Query: 451 RLPI 454
L I
Sbjct: 200 TLAI 203
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 245 EKANKIFKILSKKKF---VLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQ 301
E+A +IL +K +L+LDD+W+ V S +I+ TTR+ V
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSW--------VLKAFDSQCQILLTTRDKSVTDS 272
Query: 302 -MEAHRSFKVEC-LGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359
M VE LG + ++ V D+PE A ++ +EC G PL + +G
Sbjct: 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIG 328
Query: 360 RAMASRKTPREWEHAIEVLR 379
+ R P WE+ ++ L+
Sbjct: 329 ALL--RDFPNRWEYYLKQLQ 346
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSNPLLF----EISKVVSLQHLDL 444
PV P LR L LSSN H ++ F + +L VL L Y+N ++ + LQ L L
Sbjct: 86 PV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 445 SHSRIERLPIEF 456
S ++I R P+E
Sbjct: 144 SQNQISRFPVEL 155
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 245 EKANKIFKILSKKKF---VLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQ 301
E+A +IL +K +L+LDD+W+ V S +I+ TTR+ V
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSW--------VLKAFDSQCQILLTTRDKSVTDS 278
Query: 302 -MEAHRSFKVEC-LGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359
M VE LG + ++ V D+PE A ++ +EC G PL + +G
Sbjct: 279 VMGPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIG 334
Query: 360 RAMASRKTPREWEHAIEVLR 379
+ R P WE+ ++ L+
Sbjct: 335 ALL--RDFPNRWEYYLKQLQ 352
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 35/154 (22%)
Query: 359 GRAMASRKTPREWEHAIEVLRCSASQFS-----ESPVCPRLRTLFLSSNIFHRVNSDFFQ 413
GR+ + P A++ L S ++ + + C L+ L L S+ + + D F
Sbjct: 12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 71
Query: 414 SMASLRVLKLSYSNPLLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNL----E 468
S+ SL +HLDLS + + L F L +LK LNL
Sbjct: 72 SLGSL---------------------EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 469 YTYGVLKIPPKVISNLKILQTLRMYECATVPQAR 502
T GV + P NL LQTLR+ T + R
Sbjct: 111 QTLGVTSLFP----NLTNLQTLRIGNVETFSEIR 140
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 22/147 (14%)
Query: 374 AIEVLRCSAS--------QFSESP--VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKL 423
A E L C AS F+ P + +++L LS N + ++ A+L+VL L
Sbjct: 24 AQESLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 83
Query: 424 SYSNPLLFE---ISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNL----EYTYGVLK 475
S E + SL+HLDLS + + L F L +LK LNL T GV
Sbjct: 84 KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 143
Query: 476 IPPKVISNLKILQTLRMYECATVPQAR 502
+ P NL LQTLR+ T + R
Sbjct: 144 LFP----NLTNLQTLRIGNVETFSEIR 166
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 408 NSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466
NS A +RVL L++ + +L + +++ + HLDLSH+R+ LP L L+CL
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP---PALAALRCLE 489
Query: 467 --------LEYTYGVLKIP 477
LE GV +P
Sbjct: 490 VLQASDNALENVDGVANLP 508
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 408 NSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466
NS A +RVL L++ + +L + +++ + HLDLSH+R+ LP L L+CL
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP---PALAALRCLE 489
Query: 467 --------LEYTYGVLKIP 477
LE GV +P
Sbjct: 490 VLQASDNALENVDGVANLP 508
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 417 SLRVLKLSYSNPLLFEIS--KVVSLQHLDLSHSRIERLPIEFKYLVNL-KCLNLEYTYGV 473
SLR L LS++ ++ + + LQHLD HS ++R+ EF ++L K L L+ +Y
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTN 430
Query: 474 LKIP-PKVISNLKILQTLRM 492
KI + L L TL+M
Sbjct: 431 TKIDFDGIFLGLTSLNTLKM 450
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 431 FEISKVVSLQHLDLSHSRIE--RLPIEFKYLVNLKCLNLEYTY 471
F I ++++L+ L+++H+ I +LP F L NL ++L Y Y
Sbjct: 117 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 159
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 262 LLDDIWELVDLAQVGLPVSSC------ASSSNKIVFTTREIEVCGQMEAHRSFKVECLGF 315
L++++ + +D G P+S S+ K + I CG E + G
Sbjct: 79 LIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGS 138
Query: 316 DDAWKLFEEKVGR-DTLDTHPD--IPELAEAVARE 347
W LF+ GR D + P+ +P+ +A +E
Sbjct: 139 AGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQE 173
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 417 SLRVLKLSYSNPLLFEIS--KVVSLQHLDLSHSRIERLPIEFKYLVNL-KCLNLEYTYGV 473
SLR L LS++ ++ + + LQHLD HS ++R+ EF ++L K L L+ +Y
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTN 435
Query: 474 LKIP-PKVISNLKILQTLRM 492
KI + L L TL+M
Sbjct: 436 TKIDFDGIFLGLTSLNTLKM 455
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 431 FEISKVVSLQHLDLSHSRIE--RLPIEFKYLVNLKCLNLEYTY 471
F I ++++L+ L+++H+ I +LP F L NL ++L Y Y
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 346 RECGGLPLALITVGR-AMASRKTPREWEHAIEVLRCSASQFSESP-----VCPRLRTLFL 399
+EC L L + R + ++P + H ++VL S S S P L+ L L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 400 SSNIFHRVN---SDFFQSMASLRVLKLSYSNPLLFEISKVVSLQ---HLDLSHSRIERLP 453
N F + N ++ Q++ L +L LS+ + + SL+ H+DLSH+R+
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 454 IE 455
IE
Sbjct: 517 IE 518
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 34/255 (13%)
Query: 391 CPRLRTLFLSSNIFHRVNS----DFFQSMASLRVLKLSYSNPLLFEISKVV--SLQHLDL 444
CP+L T+ LS N F DF L L L ++N L + + +LQ L +
Sbjct: 92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL-HNNGLGPQAGAKIARALQELAV 150
Query: 445 SHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDS 504
+ P L ++ C G +K K + ++L T++M + P+ +
Sbjct: 151 NKKAKNAPP-----LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 205
Query: 505 ILFGDCRXXXXXXXXXXXXXXFT--------ITLNNFHALQRL-LDSCMLQYVSTPSLCL 555
+L FT I L ++ L+ L L+ C+L ++ +
Sbjct: 206 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV-V 264
Query: 556 SHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENC 615
F+ +++G LQTL L YN EI++D +K V + P+L +E+
Sbjct: 265 DAFSKLENIG---------LQTLRLQYN---EIELDAVRTLKTVIDEKMPDLLFLELNGN 312
Query: 616 QDMEEIISSEKLSEV 630
+ EE +++ EV
Sbjct: 313 RFSEEDDVVDEIREV 327
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 34/255 (13%)
Query: 391 CPRLRTLFLSSNIFHRVNS----DFFQSMASLRVLKLSYSNPLLFEISKVV--SLQHLDL 444
CP+L T+ LS N F DF L L L ++N L + + +LQ L +
Sbjct: 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL-HNNGLGPQAGAKIARALQELAV 151
Query: 445 SHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDS 504
+ P L ++ C G +K K + ++L T++M + P+ +
Sbjct: 152 NKKAKNAPP-----LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206
Query: 505 ILFGDCRXXXXXXXXXXXXXXFT--------ITLNNFHALQRL-LDSCMLQYVSTPSLCL 555
+L FT I L ++ L+ L L+ C+L ++ +
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV-V 265
Query: 556 SHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENC 615
F+ +++G LQTL L YN EI++D +K V + P+L +E+
Sbjct: 266 DAFSKLENIG---------LQTLRLQYN---EIELDAVRTLKTVIDEKMPDLLFLELNGN 313
Query: 616 QDMEEIISSEKLSEV 630
+ EE +++ EV
Sbjct: 314 RFSEEDDVVDEIREV 328
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSNPLLFE---ISKVVSLQHLDLSHSRI 449
RL L LS N + FQ + SLR L L ++ E + SL+ L+LSH+ +
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 450 ERLP 453
LP
Sbjct: 239 MSLP 242
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYS 426
C L+ L L+SN + + D F S+ SL L LSY+
Sbjct: 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSNPLLFE---ISKVVSLQHLDLSHSRI 449
RL L LS N + FQ + SLR L L ++ E + SL+ L+LSH+ +
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 450 ERLP 453
LP
Sbjct: 239 MSLP 242
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 243 LEEKANKIFKILSKK--KFVLLLDDIWELVDLAQVGLP-VSSCASSSNKIVFTTREIEVC 299
+EE +++ ++ +K + +L+LDD+W+ P V + +I+ TTR+ V
Sbjct: 220 IEEAKDRLRVLMLRKHPRSLLILDDVWD---------PWVLKAFDNQCQILLTTRDKSVT 270
Query: 300 GQ-MEAHRSFKVEC-LGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357
M VE LG + ++ V D+P A ++ +EC G PL +
Sbjct: 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSL 326
Query: 358 VGRAMASRKTPREWEHAIEVLR 379
+G + R P W + + L+
Sbjct: 327 IGALL--RDFPNRWAYYLRQLQ 346
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 359 GRAMASRKTPREWEHAIEVLRCSASQF-----SESPVCPRLRTLFLSSNIFHRVNSDFFQ 413
G + + P A++ L S ++ S+ C L+ L L+SN + + D F
Sbjct: 12 GSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 71
Query: 414 SMASLRVLKLSYS 426
S+ SL L LSY+
Sbjct: 72 SLGSLEHLDLSYN 84
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 432 EISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTY 471
EI + +L+ LDLSH+R+ LP E C L+Y Y
Sbjct: 265 EIKNLSNLRVLDLSHNRLTSLPAELG-----SCFQLKYFY 299
>pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
Length = 82
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 DNLDALQRELQMLIEERNDVRVRVIVAEQQQMKRLERVQGWLSRVEK 80
++L++ +R LQ L+EE D +R +V +Q ++LER++ + ++ K
Sbjct: 24 ESLESTRRMLQ-LVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINK 69
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 557 HFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKID--------NGGEVKRVRELSAPNLK 608
H N + + V S LRHL+ L L+ N + I+I N E+ R + PN
Sbjct: 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131
Query: 609 RVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKAL 663
V + +++ + + + +P+ N IP L RL L ELK L I A
Sbjct: 132 FVYLSKLKELW--LRNNPIESIPSYAF-NRIP--SLRRLDLGELKRLSYISEGAF 181
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 27/90 (30%)
Query: 433 ISKVVSLQHLDLSHSRIER---LPIEFKYLVNLKCLNLEY-------------------- 469
+ K+ +LQ LDLSHS IE ++ K L +L+ LNL Y
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 470 ----TYGVLKIPPKVISNLKILQTLRMYEC 495
T+ +K P NL +L+ L + C
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHC 434
>pdb|2QM3|A Chain A, Crystal Structure Of A Predicted Methyltransferase From
Pyrococcus Furiosus
Length = 373
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 260 VLLLDDIWELVDLAQVGLP-VSSCASSSNKIVFTTRE 295
VL DDIW +VDL++ LP V + S N++ + T E
Sbjct: 52 VLASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFE 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,610,712
Number of Sequences: 62578
Number of extensions: 760581
Number of successful extensions: 1902
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 80
length of query: 724
length of database: 14,973,337
effective HSP length: 106
effective length of query: 618
effective length of database: 8,340,069
effective search space: 5154162642
effective search space used: 5154162642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)