Query 048789
Match_columns 724
No_of_seqs 393 out of 4094
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.6E-72 1.2E-76 629.5 42.6 680 12-717 6-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.6E-47 3.5E-52 456.2 43.5 502 154-685 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.7E-33 1.4E-37 284.1 16.3 222 159-382 1-226 (287)
4 PLN00113 leucine-rich repeat r 99.7 5.5E-17 1.2E-21 194.7 13.6 266 390-684 138-422 (968)
5 PLN00113 leucine-rich repeat r 99.7 1.3E-16 2.8E-21 191.4 14.3 278 389-685 161-471 (968)
6 KOG0444 Cytoskeletal regulator 99.6 2.4E-17 5.3E-22 169.5 -1.0 270 389-684 100-380 (1255)
7 PLN03210 Resistant to P. syrin 99.6 2.2E-15 4.8E-20 181.0 14.7 218 428-685 603-844 (1153)
8 KOG0444 Cytoskeletal regulator 99.6 2.1E-16 4.6E-21 162.7 -1.9 267 388-687 74-359 (1255)
9 KOG4194 Membrane glycoprotein 99.5 1.7E-15 3.8E-20 155.1 0.3 254 386-676 167-426 (873)
10 KOG4194 Membrane glycoprotein 99.5 6.1E-15 1.3E-19 151.2 2.7 104 392-496 125-232 (873)
11 KOG0472 Leucine-rich repeat pr 99.4 7.9E-14 1.7E-18 137.0 2.1 85 385-470 221-307 (565)
12 KOG0472 Leucine-rich repeat pr 99.3 8.5E-14 1.9E-18 136.8 -4.8 101 393-496 46-148 (565)
13 KOG0617 Ras suppressor protein 99.2 1.8E-13 3.8E-18 119.0 -4.8 160 385-588 26-188 (264)
14 TIGR03015 pepcterm_ATPase puta 99.2 4.3E-09 9.4E-14 106.6 24.9 197 173-378 41-266 (269)
15 KOG4658 Apoptotic ATPase [Sign 99.2 2.4E-11 5.1E-16 139.0 7.4 271 388-686 567-867 (889)
16 PRK00411 cdc6 cell division co 99.2 2.7E-09 5.8E-14 114.5 21.5 224 152-378 28-282 (394)
17 PRK15370 E3 ubiquitin-protein 99.1 9.5E-11 2.1E-15 132.0 7.1 178 392-616 199-378 (754)
18 PF01637 Arch_ATPase: Archaeal 99.1 6.1E-10 1.3E-14 110.3 11.8 195 156-357 1-233 (234)
19 PRK15370 E3 ubiquitin-protein 99.1 1.9E-10 4E-15 129.7 7.8 226 392-684 178-405 (754)
20 PRK15387 E3 ubiquitin-protein 99.1 3.4E-10 7.3E-15 126.8 9.5 228 392-677 222-456 (788)
21 KOG0617 Ras suppressor protein 99.1 5.8E-12 1.3E-16 109.6 -3.9 101 391-494 55-159 (264)
22 KOG0618 Serine/threonine phosp 99.0 3.9E-11 8.4E-16 130.4 -1.4 103 391-497 218-322 (1081)
23 TIGR02928 orc1/cdc6 family rep 99.0 4E-08 8.7E-13 104.3 20.4 201 153-355 14-243 (365)
24 KOG4237 Extracellular matrix p 99.0 6.8E-11 1.5E-15 116.6 -1.0 104 392-496 67-175 (498)
25 PF05729 NACHT: NACHT domain 98.9 8.8E-09 1.9E-13 95.9 11.0 141 176-326 1-163 (166)
26 KOG0618 Serine/threonine phosp 98.9 1.3E-10 2.7E-15 126.5 -2.1 101 394-496 23-125 (1081)
27 PRK15387 E3 ubiquitin-protein 98.9 5.8E-09 1.3E-13 117.0 10.7 228 392-684 201-439 (788)
28 cd00116 LRR_RI Leucine-rich re 98.8 1.3E-09 2.9E-14 113.6 1.5 134 392-534 23-178 (319)
29 PRK06893 DNA replication initi 98.8 4.7E-08 1E-12 95.6 11.5 151 174-358 38-203 (229)
30 TIGR00635 ruvB Holliday juncti 98.8 9.9E-08 2.2E-12 98.4 13.9 189 154-360 4-203 (305)
31 PRK04841 transcriptional regul 98.8 1.8E-07 4E-12 112.1 18.0 195 152-364 12-231 (903)
32 PRK00080 ruvB Holliday junctio 98.7 4.2E-07 9.1E-12 94.4 16.3 189 154-360 25-224 (328)
33 cd00116 LRR_RI Leucine-rich re 98.7 2.6E-08 5.6E-13 103.8 6.9 14 573-586 250-263 (319)
34 PF14580 LRR_9: Leucine-rich r 98.7 2.2E-08 4.7E-13 91.9 5.4 130 388-529 15-148 (175)
35 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.7E-13 102.3 1.7 186 389-616 118-312 (505)
36 KOG4237 Extracellular matrix p 98.6 4.6E-08 1E-12 97.0 4.3 211 388-612 87-353 (498)
37 TIGR03420 DnaA_homol_Hda DnaA 98.6 5.3E-07 1.2E-11 88.6 11.9 167 159-359 22-202 (226)
38 COG2256 MGS1 ATPase related to 98.5 7.9E-07 1.7E-11 89.3 12.0 159 166-355 39-209 (436)
39 KOG0532 Leucine-rich repeat (L 98.5 4.3E-09 9.4E-14 108.8 -4.7 168 396-587 79-248 (722)
40 PRK13342 recombination factor 98.5 1.5E-06 3.2E-11 93.2 14.1 175 154-359 12-197 (413)
41 PTZ00112 origin recognition co 98.5 2.4E-06 5.3E-11 94.3 15.5 171 153-328 754-951 (1164)
42 TIGR02903 spore_lon_C ATP-depe 98.5 1.6E-05 3.5E-10 88.9 22.5 202 154-361 154-398 (615)
43 cd01128 rho_factor Transcripti 98.5 3.4E-07 7.4E-12 89.6 7.3 93 173-268 14-114 (249)
44 PF14580 LRR_9: Leucine-rich r 98.4 1E-07 2.2E-12 87.5 2.4 110 412-534 15-126 (175)
45 PF13173 AAA_14: AAA domain 98.4 6.1E-07 1.3E-11 79.1 7.1 119 175-317 2-126 (128)
46 cd00009 AAA The AAA+ (ATPases 98.4 2.6E-06 5.7E-11 77.3 11.4 123 157-297 1-131 (151)
47 PLN03150 hypothetical protein; 98.4 7.9E-07 1.7E-11 100.2 9.3 107 393-500 419-530 (623)
48 COG1474 CDC6 Cdc6-related prot 98.4 3.5E-05 7.6E-10 80.1 20.7 191 153-350 16-229 (366)
49 PRK05564 DNA polymerase III su 98.4 1.1E-05 2.3E-10 83.3 16.7 175 155-356 5-188 (313)
50 PTZ00202 tuzin; Provisional 98.4 9.3E-06 2E-10 83.2 15.5 160 151-325 259-433 (550)
51 PRK08727 hypothetical protein; 98.4 5.8E-06 1.3E-10 81.1 13.7 167 155-355 20-201 (233)
52 KOG0532 Leucine-rich repeat (L 98.4 2E-08 4.3E-13 104.1 -4.1 150 389-558 118-270 (722)
53 PF13401 AAA_22: AAA domain; P 98.3 9.9E-07 2.1E-11 78.4 6.9 117 174-295 3-125 (131)
54 PRK12402 replication factor C 98.3 9.6E-06 2.1E-10 85.1 15.0 195 154-357 15-225 (337)
55 PF05496 RuvB_N: Holliday junc 98.3 4.4E-06 9.6E-11 78.4 10.2 175 154-363 24-226 (233)
56 KOG1259 Nischarin, modulator o 98.3 1.9E-07 4.1E-12 89.3 0.6 129 517-677 280-410 (490)
57 KOG2028 ATPase related to the 98.2 2E-05 4.3E-10 77.8 13.6 162 166-353 153-331 (554)
58 PRK07003 DNA polymerase III su 98.2 2.4E-05 5.3E-10 86.2 15.7 192 154-357 16-220 (830)
59 KOG4341 F-box protein containi 98.2 1.2E-07 2.6E-12 95.0 -2.0 140 549-706 295-444 (483)
60 TIGR01242 26Sp45 26S proteasom 98.2 5.8E-06 1.3E-10 87.2 10.6 170 154-352 122-328 (364)
61 PRK14949 DNA polymerase III su 98.2 2.1E-05 4.6E-10 88.4 15.3 192 154-357 16-219 (944)
62 PRK00440 rfc replication facto 98.2 4.1E-05 9E-10 79.6 16.7 179 154-356 17-201 (319)
63 PF13191 AAA_16: AAA ATPase do 98.2 2.3E-06 5E-11 81.1 6.7 44 156-199 2-48 (185)
64 PRK09376 rho transcription ter 98.2 2.6E-06 5.6E-11 86.9 7.2 99 165-268 158-267 (416)
65 PRK14961 DNA polymerase III su 98.2 4.9E-05 1.1E-09 79.9 17.0 190 154-356 16-218 (363)
66 PRK08084 DNA replication initi 98.2 2.1E-05 4.5E-10 77.3 13.2 171 155-358 24-209 (235)
67 COG4886 Leucine-rich repeat (L 98.2 1.1E-06 2.4E-11 94.4 4.6 101 392-495 116-219 (394)
68 PRK13341 recombination factor 98.2 1.5E-05 3.2E-10 90.1 13.5 169 155-354 29-213 (725)
69 PLN03025 replication factor C 98.2 2E-05 4.4E-10 81.4 13.6 179 155-355 14-197 (319)
70 PRK14963 DNA polymerase III su 98.2 6.3E-06 1.4E-10 89.5 9.9 191 154-355 14-214 (504)
71 PRK12323 DNA polymerase III su 98.2 3.7E-05 8.1E-10 83.6 15.1 195 154-358 16-225 (700)
72 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 65.7 2.6 59 437-496 1-60 (61)
73 COG2909 MalT ATP-dependent tra 98.2 5.8E-05 1.2E-09 83.2 16.3 197 153-364 18-239 (894)
74 COG3899 Predicted ATPase [Gene 98.1 2.1E-05 4.5E-10 91.2 13.7 206 156-365 2-267 (849)
75 PRK04195 replication factor C 98.1 3E-05 6.6E-10 84.9 14.4 179 154-362 14-206 (482)
76 PF13855 LRR_8: Leucine rich r 98.1 1.6E-06 3.4E-11 65.1 2.9 57 392-448 1-60 (61)
77 PRK14960 DNA polymerase III su 98.1 5.4E-05 1.2E-09 82.6 15.7 191 154-356 15-217 (702)
78 PRK09087 hypothetical protein; 98.1 3.8E-05 8.3E-10 74.6 12.7 161 174-377 43-221 (226)
79 PRK14956 DNA polymerase III su 98.1 4.6E-05 9.9E-10 80.8 13.9 194 154-356 18-220 (484)
80 TIGR00767 rho transcription te 98.1 1.5E-05 3.2E-10 81.9 9.4 94 173-268 166-266 (415)
81 PRK05642 DNA replication initi 98.1 4.9E-05 1.1E-09 74.5 12.8 151 175-359 45-209 (234)
82 PRK14962 DNA polymerase III su 98.1 0.0001 2.2E-09 79.5 15.9 195 154-362 14-223 (472)
83 PRK06645 DNA polymerase III su 98.1 0.00015 3.2E-09 78.6 17.0 192 155-355 22-226 (507)
84 PRK14957 DNA polymerase III su 98.0 9.5E-05 2.1E-09 80.6 15.5 180 155-358 17-221 (546)
85 KOG1259 Nischarin, modulator o 98.0 7E-07 1.5E-11 85.4 -1.1 102 391-496 306-410 (490)
86 KOG3207 Beta-tubulin folding c 98.0 1.4E-06 3E-11 87.9 0.9 137 388-536 142-286 (505)
87 PRK03992 proteasome-activating 98.0 0.00014 3.1E-09 77.1 15.9 198 154-380 131-374 (389)
88 KOG2120 SCF ubiquitin ligase, 98.0 2.4E-07 5.3E-12 88.6 -5.0 58 439-497 187-246 (419)
89 PF00308 Bac_DnaA: Bacterial d 98.0 0.00011 2.4E-09 71.1 13.2 158 175-355 34-205 (219)
90 TIGR02397 dnaX_nterm DNA polym 98.0 0.00034 7.4E-09 74.0 18.1 180 154-358 14-218 (355)
91 PRK07940 DNA polymerase III su 98.0 0.00021 4.6E-09 75.2 16.0 186 154-358 5-213 (394)
92 TIGR00678 holB DNA polymerase 98.0 0.00032 6.9E-09 66.5 15.9 157 165-354 3-187 (188)
93 PRK07471 DNA polymerase III su 98.0 1.5E-05 3.2E-10 83.1 7.2 193 154-358 19-238 (365)
94 PRK07994 DNA polymerase III su 98.0 0.00011 2.4E-09 81.4 14.0 192 154-357 16-219 (647)
95 PRK08691 DNA polymerase III su 98.0 0.00012 2.5E-09 80.8 14.1 190 154-357 16-219 (709)
96 PRK08903 DnaA regulatory inact 97.9 0.00013 2.8E-09 71.6 13.2 169 157-362 22-203 (227)
97 PRK14958 DNA polymerase III su 97.9 0.00018 4E-09 78.4 15.4 191 154-356 16-218 (509)
98 PRK14955 DNA polymerase III su 97.9 0.00016 3.4E-09 77.1 14.6 197 154-356 16-226 (397)
99 COG4886 Leucine-rich repeat (L 97.9 1.6E-05 3.5E-10 85.4 7.0 188 396-616 97-288 (394)
100 CHL00181 cbbX CbbX; Provisiona 97.9 0.00027 5.9E-09 71.3 15.2 155 155-329 24-212 (287)
101 PRK11331 5-methylcytosine-spec 97.9 8.8E-05 1.9E-09 77.7 11.9 107 154-268 175-283 (459)
102 TIGR02880 cbbX_cfxQ probable R 97.9 0.00022 4.9E-09 72.0 14.5 154 155-328 23-210 (284)
103 TIGR02881 spore_V_K stage V sp 97.9 0.00014 3E-09 72.9 12.9 153 155-329 7-194 (261)
104 PRK05896 DNA polymerase III su 97.9 0.00012 2.7E-09 79.7 13.1 194 154-359 16-222 (605)
105 PRK14951 DNA polymerase III su 97.9 0.00031 6.7E-09 77.7 16.3 196 154-357 16-224 (618)
106 PRK09112 DNA polymerase III su 97.9 0.00018 3.9E-09 74.6 13.6 196 154-358 23-240 (351)
107 PLN03150 hypothetical protein; 97.9 2.5E-05 5.4E-10 88.2 7.7 82 417-499 419-504 (623)
108 PRK14970 DNA polymerase III su 97.9 0.00037 8E-09 73.9 16.2 179 154-355 17-206 (367)
109 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00015 3.3E-09 84.1 14.1 181 154-352 187-390 (852)
110 PF05621 TniB: Bacterial TniB 97.9 0.00072 1.6E-08 66.9 16.5 199 155-356 35-259 (302)
111 PRK14964 DNA polymerase III su 97.9 0.00042 9.1E-09 74.5 16.0 191 154-356 13-215 (491)
112 PF14516 AAA_35: AAA-like doma 97.9 0.0016 3.4E-08 67.5 19.9 200 154-365 11-246 (331)
113 PRK14087 dnaA chromosomal repl 97.8 0.00014 2.9E-09 78.4 12.3 166 175-359 141-320 (450)
114 KOG1909 Ran GTPase-activating 97.8 5.3E-06 1.2E-10 81.6 1.0 245 389-678 27-310 (382)
115 PTZ00361 26 proteosome regulat 97.8 0.00025 5.5E-09 75.3 13.3 197 154-378 183-424 (438)
116 PRK07764 DNA polymerase III su 97.8 0.00052 1.1E-08 78.8 16.3 188 155-355 16-218 (824)
117 PRK14959 DNA polymerase III su 97.8 0.00084 1.8E-08 73.8 16.9 195 155-362 17-225 (624)
118 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6E-10 53.3 3.4 40 437-477 1-40 (44)
119 PRK14969 DNA polymerase III su 97.8 0.00065 1.4E-08 74.7 15.9 190 154-355 16-217 (527)
120 KOG2543 Origin recognition com 97.7 0.00021 4.5E-09 71.6 10.5 164 153-325 5-192 (438)
121 PRK14954 DNA polymerase III su 97.7 0.00066 1.4E-08 75.4 15.7 195 154-353 16-223 (620)
122 PTZ00454 26S protease regulato 97.7 0.0008 1.7E-08 71.0 15.6 171 154-352 145-351 (398)
123 PRK09111 DNA polymerase III su 97.7 0.00063 1.4E-08 75.5 15.3 194 154-357 24-232 (598)
124 KOG1909 Ran GTPase-activating 97.7 1E-05 2.2E-10 79.6 0.9 223 411-676 25-280 (382)
125 PRK14952 DNA polymerase III su 97.7 0.00091 2E-08 73.8 16.0 196 154-361 13-223 (584)
126 PRK14088 dnaA chromosomal repl 97.7 0.00031 6.7E-09 75.6 12.2 157 175-354 130-301 (440)
127 KOG2120 SCF ubiquitin ligase, 97.7 3.7E-06 7.9E-11 80.7 -2.2 81 418-498 187-273 (419)
128 KOG0989 Replication factor C, 97.7 0.00043 9.3E-09 67.4 11.4 182 154-353 36-225 (346)
129 COG2255 RuvB Holliday junction 97.7 0.00079 1.7E-08 64.9 13.0 168 154-359 26-224 (332)
130 PRK06305 DNA polymerase III su 97.7 0.0013 2.8E-08 71.0 16.4 187 154-354 17-218 (451)
131 KOG4341 F-box protein containi 97.7 2.6E-06 5.6E-11 85.6 -3.8 236 417-682 139-388 (483)
132 PRK14950 DNA polymerase III su 97.7 0.00046 9.9E-09 77.3 13.3 193 154-358 16-221 (585)
133 KOG3665 ZYG-1-like serine/thre 97.7 3.4E-05 7.4E-10 86.8 4.3 135 392-534 122-263 (699)
134 TIGR00362 DnaA chromosomal rep 97.7 0.00042 9.2E-09 74.4 12.6 158 175-355 136-307 (405)
135 KOG2227 Pre-initiation complex 97.7 0.0023 4.9E-08 66.1 16.8 173 153-330 149-342 (529)
136 PRK12422 chromosomal replicati 97.7 0.00037 8E-09 74.8 11.9 150 176-350 142-305 (445)
137 TIGR02639 ClpA ATP-dependent C 97.6 0.00039 8.4E-09 80.2 12.7 156 154-326 182-358 (731)
138 PRK06620 hypothetical protein; 97.6 0.00038 8.2E-09 67.1 10.1 135 176-356 45-187 (214)
139 PRK08451 DNA polymerase III su 97.6 0.002 4.4E-08 70.0 16.4 192 154-358 14-218 (535)
140 PRK07133 DNA polymerase III su 97.6 0.0018 3.9E-08 72.5 16.4 184 154-355 18-216 (725)
141 PRK14971 DNA polymerase III su 97.6 0.0019 4E-08 72.3 16.4 174 154-355 17-219 (614)
142 PRK00149 dnaA chromosomal repl 97.6 0.00049 1.1E-08 74.9 11.7 158 175-355 148-319 (450)
143 TIGR03689 pup_AAA proteasome A 97.6 0.00065 1.4E-08 73.3 12.2 161 154-328 182-380 (512)
144 CHL00095 clpC Clp protease ATP 97.5 0.0004 8.6E-09 81.1 11.0 155 154-325 179-353 (821)
145 PRK15386 type III secretion pr 97.5 0.00028 6E-09 73.2 8.4 58 415-477 51-111 (426)
146 KOG3665 ZYG-1-like serine/thre 97.5 4E-05 8.7E-10 86.2 2.5 105 415-533 121-232 (699)
147 PRK14953 DNA polymerase III su 97.5 0.0033 7.2E-08 68.3 17.0 188 155-358 17-220 (486)
148 PHA02544 44 clamp loader, smal 97.5 0.00071 1.5E-08 70.2 11.4 46 154-199 21-67 (316)
149 COG1222 RPT1 ATP-dependent 26S 97.5 0.0043 9.3E-08 62.0 15.9 194 155-378 152-392 (406)
150 COG3267 ExeA Type II secretory 97.5 0.0058 1.3E-07 58.4 15.9 182 172-359 48-246 (269)
151 PRK10536 hypothetical protein; 97.5 0.002 4.4E-08 62.5 13.1 55 155-212 56-110 (262)
152 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.3E-09 50.4 3.1 38 416-453 1-40 (44)
153 PRK11034 clpA ATP-dependent Cl 97.5 0.00092 2E-08 76.2 12.1 155 155-326 187-362 (758)
154 PRK10865 protein disaggregatio 97.5 0.0012 2.6E-08 77.1 13.3 155 154-326 178-354 (857)
155 TIGR00763 lon ATP-dependent pr 97.4 0.0076 1.7E-07 70.1 19.7 46 154-199 320-371 (775)
156 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0012 2.6E-08 77.3 12.7 154 155-326 174-349 (852)
157 TIGR01241 FtsH_fam ATP-depende 97.4 0.0044 9.6E-08 68.3 16.4 171 154-352 55-260 (495)
158 PRK06647 DNA polymerase III su 97.4 0.0046 9.9E-08 68.4 16.2 191 154-356 16-218 (563)
159 PRK14948 DNA polymerase III su 97.4 0.0066 1.4E-07 68.0 17.5 195 154-358 16-222 (620)
160 PRK14086 dnaA chromosomal repl 97.4 0.002 4.3E-08 70.6 13.0 154 176-352 315-482 (617)
161 PRK08118 topology modulation p 97.4 0.00012 2.6E-09 67.6 3.1 36 176-211 2-37 (167)
162 KOG2982 Uncharacterized conser 97.4 5.7E-05 1.2E-09 72.7 0.8 81 413-496 68-157 (418)
163 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0034 7.3E-08 66.9 13.7 91 155-268 191-293 (802)
164 COG3903 Predicted ATPase [Gene 97.3 0.00028 6.1E-09 71.9 5.6 178 174-364 13-195 (414)
165 KOG2004 Mitochondrial ATP-depe 97.3 0.0041 9E-08 67.5 14.4 97 154-268 411-516 (906)
166 smart00382 AAA ATPases associa 97.3 0.0008 1.7E-08 60.2 8.2 88 176-270 3-91 (148)
167 PF05673 DUF815: Protein of un 97.3 0.0012 2.6E-08 63.2 9.2 46 154-199 27-76 (249)
168 KOG0531 Protein phosphatase 1, 97.3 4.7E-05 1E-09 82.0 -0.5 105 388-496 91-197 (414)
169 PRK14965 DNA polymerase III su 97.3 0.0044 9.5E-08 69.2 14.8 192 154-358 16-221 (576)
170 CHL00176 ftsH cell division pr 97.3 0.0064 1.4E-07 68.2 16.0 170 154-351 183-387 (638)
171 COG0466 Lon ATP-dependent Lon 97.3 0.012 2.6E-07 64.3 16.9 154 154-326 323-508 (782)
172 PRK12608 transcription termina 97.2 0.0022 4.7E-08 65.9 10.8 104 163-268 120-231 (380)
173 PRK08116 hypothetical protein; 97.2 0.00062 1.3E-08 68.1 6.7 101 176-295 115-220 (268)
174 KOG1859 Leucine-rich repeat pr 97.2 1E-05 2.2E-10 86.7 -6.3 104 390-498 185-292 (1096)
175 PRK05563 DNA polymerase III su 97.2 0.013 2.8E-07 65.2 17.2 189 154-355 16-217 (559)
176 PRK07399 DNA polymerase III su 97.2 0.013 2.9E-07 59.9 15.7 195 155-357 5-220 (314)
177 KOG4579 Leucine-rich repeat (L 97.2 0.00018 3.9E-09 61.3 1.7 87 392-479 53-141 (177)
178 PRK10787 DNA-binding ATP-depen 97.2 0.009 1.9E-07 68.9 15.8 159 153-327 321-507 (784)
179 PF00004 AAA: ATPase family as 97.2 0.0009 1.9E-08 59.2 6.2 22 178-199 1-22 (132)
180 KOG0531 Protein phosphatase 1, 97.1 7.1E-05 1.5E-09 80.6 -1.4 125 393-536 73-201 (414)
181 PF04665 Pox_A32: Poxvirus A32 97.1 0.0011 2.4E-08 64.0 6.7 36 176-214 14-49 (241)
182 KOG1859 Leucine-rich repeat pr 97.1 3.6E-05 7.9E-10 82.7 -3.9 82 389-471 206-290 (1096)
183 PRK05707 DNA polymerase III su 97.0 0.019 4.1E-07 59.2 15.5 167 175-358 22-203 (328)
184 COG0593 DnaA ATPase involved i 97.0 0.0046 9.9E-08 64.4 11.0 140 174-334 112-265 (408)
185 TIGR00602 rad24 checkpoint pro 97.0 0.0033 7.2E-08 69.9 10.5 46 154-199 84-134 (637)
186 PRK07261 topology modulation p 97.0 0.003 6.4E-08 58.6 8.7 67 177-268 2-68 (171)
187 COG0542 clpA ATP-binding subun 97.0 0.018 4E-07 64.7 15.7 104 154-268 491-604 (786)
188 COG1373 Predicted ATPase (AAA+ 97.0 0.007 1.5E-07 64.3 11.9 133 161-321 24-162 (398)
189 PRK06835 DNA replication prote 97.0 0.02 4.4E-07 58.8 14.7 37 175-214 183-219 (329)
190 KOG0730 AAA+-type ATPase [Post 97.0 0.026 5.7E-07 61.1 15.8 165 154-342 434-631 (693)
191 PRK15386 type III secretion pr 96.9 0.0016 3.5E-08 67.7 6.5 77 391-479 51-133 (426)
192 CHL00195 ycf46 Ycf46; Provisio 96.9 0.013 2.8E-07 63.5 13.0 152 154-329 228-408 (489)
193 PRK12727 flagellar biosynthesi 96.9 0.04 8.7E-07 59.3 16.3 88 175-267 350-438 (559)
194 KOG0734 AAA+-type ATPase conta 96.9 0.012 2.5E-07 61.9 11.7 45 155-199 305-361 (752)
195 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0015 3.2E-08 66.8 5.2 46 154-199 51-102 (361)
196 KOG4579 Leucine-rich repeat (L 96.8 0.0003 6.4E-09 60.0 0.0 103 392-496 27-134 (177)
197 PRK10865 protein disaggregatio 96.8 0.18 4E-06 59.2 22.8 46 154-199 568-622 (857)
198 PF00448 SRP54: SRP54-type pro 96.8 0.0059 1.3E-07 57.8 8.5 89 175-266 1-92 (196)
199 KOG0741 AAA+-type ATPase [Post 96.8 0.027 5.8E-07 59.2 13.6 148 174-348 537-704 (744)
200 PF10443 RNA12: RNA12 protein; 96.8 0.049 1.1E-06 56.7 15.5 199 159-369 1-289 (431)
201 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.6E-08 57.4 3.5 23 177-199 1-23 (121)
202 PRK08058 DNA polymerase III su 96.7 0.038 8.2E-07 57.3 14.8 162 155-325 6-181 (329)
203 TIGR01243 CDC48 AAA family ATP 96.7 0.029 6.2E-07 65.2 15.4 171 154-352 453-657 (733)
204 KOG0991 Replication factor C, 96.7 0.0067 1.4E-07 56.7 8.0 45 155-199 28-72 (333)
205 TIGR02639 ClpA ATP-dependent C 96.7 0.013 2.8E-07 67.9 12.2 46 154-199 454-508 (731)
206 PRK08181 transposase; Validate 96.7 0.0032 6.9E-08 62.6 6.2 78 168-268 101-178 (269)
207 TIGR01243 CDC48 AAA family ATP 96.7 0.015 3.2E-07 67.6 12.6 171 155-353 179-382 (733)
208 PRK00771 signal recognition pa 96.7 0.055 1.2E-06 57.8 15.7 90 174-267 94-185 (437)
209 COG1223 Predicted ATPase (AAA+ 96.6 0.034 7.4E-07 53.1 12.1 170 154-352 121-319 (368)
210 TIGR02237 recomb_radB DNA repa 96.6 0.013 2.8E-07 56.6 9.9 48 174-225 11-58 (209)
211 PRK06921 hypothetical protein; 96.6 0.0022 4.7E-08 64.0 4.3 39 174-214 116-154 (266)
212 cd01393 recA_like RecA is a b 96.6 0.018 3.9E-07 56.4 10.6 90 174-267 18-124 (226)
213 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0085 1.8E-07 69.9 9.6 47 153-199 565-620 (852)
214 KOG2982 Uncharacterized conser 96.6 0.0012 2.6E-08 63.8 2.2 80 391-470 70-156 (418)
215 PRK08769 DNA polymerase III su 96.6 0.096 2.1E-06 53.5 16.0 174 161-358 11-208 (319)
216 PRK12377 putative replication 96.5 0.011 2.5E-07 57.9 8.9 75 174-268 100-174 (248)
217 COG5238 RNA1 Ran GTPase-activa 96.5 0.0019 4.1E-08 61.8 2.9 98 567-675 208-312 (388)
218 PRK09361 radB DNA repair and r 96.5 0.0089 1.9E-07 58.5 7.9 47 174-224 22-68 (225)
219 COG1875 NYN ribonuclease and A 96.5 0.0052 1.1E-07 61.6 6.0 134 158-297 228-389 (436)
220 PRK10867 signal recognition pa 96.5 0.091 2E-06 56.0 15.8 26 174-199 99-124 (433)
221 cd00983 recA RecA is a bacter 96.5 0.0091 2E-07 60.7 7.9 85 174-266 54-142 (325)
222 PF07693 KAP_NTPase: KAP famil 96.5 0.068 1.5E-06 55.6 14.9 40 160-199 2-44 (325)
223 KOG0743 AAA+-type ATPase [Post 96.4 0.75 1.6E-05 48.2 21.4 150 176-364 236-415 (457)
224 PF13177 DNA_pol3_delta2: DNA 96.4 0.04 8.6E-07 50.6 11.4 42 158-199 1-43 (162)
225 PRK06526 transposase; Provisio 96.4 0.005 1.1E-07 60.9 5.5 26 174-199 97-122 (254)
226 KOG1514 Origin recognition com 96.4 0.13 2.8E-06 56.4 16.3 196 153-356 395-619 (767)
227 PRK06696 uridine kinase; Valid 96.4 0.0046 1E-07 60.3 5.2 41 159-199 3-46 (223)
228 PRK09183 transposase/IS protei 96.4 0.0086 1.9E-07 59.6 7.0 25 175-199 102-126 (259)
229 PRK09354 recA recombinase A; P 96.4 0.012 2.6E-07 60.3 8.2 85 174-266 59-147 (349)
230 TIGR03346 chaperone_ClpB ATP-d 96.4 0.017 3.7E-07 67.9 10.5 46 154-199 565-619 (852)
231 PLN00020 ribulose bisphosphate 96.3 0.0071 1.5E-07 61.5 6.2 27 173-199 146-172 (413)
232 PF02562 PhoH: PhoH-like prote 96.3 0.0092 2E-07 56.4 6.6 130 158-297 4-157 (205)
233 COG2607 Predicted ATPase (AAA+ 96.3 0.023 5E-07 53.7 8.8 45 155-199 61-109 (287)
234 TIGR02012 tigrfam_recA protein 96.3 0.015 3.2E-07 59.2 8.2 86 174-267 54-143 (321)
235 KOG2123 Uncharacterized conser 96.3 0.00082 1.8E-08 64.4 -0.7 101 391-493 18-125 (388)
236 cd01394 radB RadB. The archaea 96.3 0.025 5.5E-07 55.0 9.7 43 174-219 18-60 (218)
237 KOG0731 AAA+-type ATPase conta 96.3 0.055 1.2E-06 60.5 13.0 173 155-354 312-520 (774)
238 KOG1947 Leucine rich repeat pr 96.2 0.00093 2E-08 74.0 -0.8 108 391-498 187-308 (482)
239 KOG0736 Peroxisome assembly fa 96.2 0.044 9.5E-07 60.4 11.6 92 154-268 672-775 (953)
240 KOG0733 Nuclear AAA ATPase (VC 96.2 0.081 1.8E-06 56.8 13.2 153 174-352 544-718 (802)
241 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.017 3.8E-07 56.9 8.1 56 174-231 18-77 (235)
242 PRK05541 adenylylsulfate kinas 96.2 0.013 2.8E-07 54.8 6.8 36 174-212 6-41 (176)
243 cd01131 PilT Pilus retraction 96.2 0.009 1.9E-07 57.0 5.7 111 176-300 2-113 (198)
244 PRK10733 hflB ATP-dependent me 96.2 0.043 9.3E-07 62.3 12.0 169 155-351 153-356 (644)
245 PRK15455 PrkA family serine pr 96.2 0.006 1.3E-07 65.7 4.8 45 155-199 77-127 (644)
246 KOG2228 Origin recognition com 96.2 0.07 1.5E-06 53.2 11.7 166 154-327 24-220 (408)
247 COG5238 RNA1 Ran GTPase-activa 96.1 0.0021 4.6E-08 61.4 1.3 134 391-533 29-197 (388)
248 KOG0728 26S proteasome regulat 96.1 0.18 3.8E-06 47.9 13.7 163 156-345 148-350 (404)
249 TIGR00959 ffh signal recogniti 96.1 0.049 1.1E-06 58.0 11.2 26 174-199 98-123 (428)
250 PRK07952 DNA replication prote 96.1 0.044 9.5E-07 53.7 10.1 75 175-268 99-173 (244)
251 cd01133 F1-ATPase_beta F1 ATP 96.1 0.023 4.9E-07 56.2 8.1 92 174-268 68-174 (274)
252 TIGR03499 FlhF flagellar biosy 96.1 0.031 6.7E-07 56.5 9.3 88 174-266 193-281 (282)
253 KOG0744 AAA+-type ATPase [Post 96.1 0.022 4.7E-07 56.2 7.6 82 175-268 177-261 (423)
254 PRK06547 hypothetical protein; 96.0 0.01 2.2E-07 55.0 5.3 34 166-199 6-39 (172)
255 PF08423 Rad51: Rad51; InterP 96.0 0.038 8.3E-07 54.9 9.7 59 174-233 37-98 (256)
256 CHL00095 clpC Clp protease ATP 96.0 0.041 8.8E-07 64.6 11.4 46 154-199 509-563 (821)
257 PRK06871 DNA polymerase III su 96.0 0.33 7.2E-06 49.7 16.6 176 162-355 10-200 (325)
258 PRK06090 DNA polymerase III su 96.0 0.34 7.4E-06 49.5 16.5 175 162-358 11-201 (319)
259 COG0572 Udk Uridine kinase [Nu 96.0 0.022 4.8E-07 53.8 7.3 79 174-258 7-85 (218)
260 KOG2739 Leucine-rich acidic nu 96.0 0.0032 6.9E-08 60.3 1.7 58 412-470 61-126 (260)
261 KOG2739 Leucine-rich acidic nu 96.0 0.0032 6.9E-08 60.3 1.6 85 413-499 40-130 (260)
262 cd03115 SRP The signal recogni 95.9 0.035 7.5E-07 51.7 8.5 23 177-199 2-24 (173)
263 TIGR02238 recomb_DMC1 meiotic 95.9 0.036 7.7E-07 56.7 9.1 60 174-234 95-157 (313)
264 cd01120 RecA-like_NTPases RecA 95.9 0.046 1E-06 50.1 9.3 39 177-218 1-39 (165)
265 KOG1969 DNA replication checkp 95.9 0.02 4.3E-07 62.6 7.3 72 174-268 325-398 (877)
266 PRK04296 thymidine kinase; Pro 95.9 0.012 2.6E-07 55.7 5.2 113 176-297 3-117 (190)
267 PRK07667 uridine kinase; Provi 95.9 0.012 2.5E-07 56.0 5.1 37 163-199 3-41 (193)
268 TIGR01425 SRP54_euk signal rec 95.9 0.3 6.4E-06 51.9 15.7 26 174-199 99-124 (429)
269 PRK13531 regulatory ATPase Rav 95.9 0.024 5.3E-07 60.4 7.7 44 154-199 20-63 (498)
270 COG2884 FtsE Predicted ATPase 95.8 0.063 1.4E-06 49.0 9.1 26 174-199 27-52 (223)
271 COG1484 DnaC DNA replication p 95.8 0.046 1E-06 54.1 9.2 75 174-268 104-178 (254)
272 PRK08939 primosomal protein Dn 95.8 0.041 8.8E-07 56.1 8.9 115 158-294 135-259 (306)
273 PRK10463 hydrogenase nickel in 95.8 0.047 1E-06 54.5 9.0 32 168-199 97-128 (290)
274 COG0464 SpoVK ATPases of the A 95.8 0.1 2.3E-06 57.7 12.8 153 155-330 243-427 (494)
275 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.083 1.8E-06 52.0 10.7 49 174-227 20-68 (237)
276 COG2812 DnaX DNA polymerase II 95.7 0.071 1.5E-06 57.5 10.7 186 155-353 17-215 (515)
277 COG4608 AppF ABC-type oligopep 95.7 0.053 1.2E-06 52.8 8.8 125 174-304 38-178 (268)
278 COG1618 Predicted nucleotide k 95.7 0.013 2.8E-07 51.8 4.1 24 176-199 6-29 (179)
279 PF01695 IstB_IS21: IstB-like 95.7 0.021 4.5E-07 53.2 5.9 74 174-268 46-119 (178)
280 PHA00729 NTP-binding motif con 95.7 0.016 3.5E-07 55.4 5.0 35 165-199 7-41 (226)
281 KOG0735 AAA+-type ATPase [Post 95.7 0.033 7.1E-07 60.7 7.8 74 174-268 430-505 (952)
282 PRK06964 DNA polymerase III su 95.6 0.63 1.4E-05 48.1 16.8 91 256-358 131-225 (342)
283 PF13238 AAA_18: AAA domain; P 95.6 0.0098 2.1E-07 52.2 3.3 22 178-199 1-22 (129)
284 COG0470 HolB ATPase involved i 95.6 0.089 1.9E-06 54.7 11.1 44 156-199 3-48 (325)
285 PLN03187 meiotic recombination 95.6 0.064 1.4E-06 55.3 9.6 60 174-234 125-187 (344)
286 KOG2035 Replication factor C, 95.6 0.65 1.4E-05 45.2 15.4 206 156-380 15-260 (351)
287 KOG1644 U2-associated snRNP A' 95.6 0.014 3E-07 53.7 4.1 100 393-495 43-150 (233)
288 PRK09270 nucleoside triphospha 95.6 0.018 3.9E-07 56.4 5.3 27 173-199 31-57 (229)
289 PF00485 PRK: Phosphoribulokin 95.6 0.01 2.2E-07 56.5 3.5 83 177-262 1-88 (194)
290 PRK11889 flhF flagellar biosyn 95.6 0.072 1.6E-06 55.2 9.6 89 174-267 240-330 (436)
291 cd03247 ABCC_cytochrome_bd The 95.6 0.069 1.5E-06 50.0 9.0 26 174-199 27-52 (178)
292 TIGR00554 panK_bact pantothena 95.6 0.082 1.8E-06 53.1 9.8 80 173-257 60-141 (290)
293 PRK06067 flagellar accessory p 95.5 0.082 1.8E-06 52.0 9.7 88 174-267 24-130 (234)
294 PRK04301 radA DNA repair and r 95.5 0.076 1.7E-06 54.8 9.9 58 174-232 101-161 (317)
295 PRK08233 hypothetical protein; 95.5 0.013 2.7E-07 55.2 3.8 25 175-199 3-27 (182)
296 PF00154 RecA: recA bacterial 95.5 0.095 2.1E-06 53.2 10.1 86 175-268 53-142 (322)
297 TIGR02239 recomb_RAD51 DNA rep 95.5 0.086 1.9E-06 54.1 10.0 59 174-233 95-156 (316)
298 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.7E-07 45.0 3.0 23 177-199 1-23 (69)
299 PF00560 LRR_1: Leucine Rich R 95.5 0.0048 1E-07 35.0 0.5 21 438-458 1-21 (22)
300 TIGR02858 spore_III_AA stage I 95.5 0.12 2.5E-06 51.7 10.5 126 163-300 98-233 (270)
301 TIGR00064 ftsY signal recognit 95.5 0.093 2E-06 52.6 9.9 92 173-267 70-164 (272)
302 PRK07993 DNA polymerase III su 95.5 0.68 1.5E-05 48.0 16.4 172 162-356 10-202 (334)
303 COG0541 Ffh Signal recognition 95.4 0.63 1.4E-05 48.5 15.6 58 174-234 99-157 (451)
304 TIGR01069 mutS2 MutS2 family p 95.4 0.13 2.9E-06 59.3 12.2 25 174-198 321-345 (771)
305 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.046 1E-06 49.4 6.7 116 176-297 3-139 (159)
306 PRK05480 uridine/cytidine kina 95.4 0.015 3.3E-07 56.1 4.0 27 173-199 4-30 (209)
307 PF05659 RPW8: Arabidopsis bro 95.4 0.058 1.3E-06 48.0 7.2 112 2-130 3-114 (147)
308 PF06309 Torsin: Torsin; Inte 95.4 0.027 5.9E-07 48.1 4.9 45 155-199 26-77 (127)
309 TIGR00390 hslU ATP-dependent p 95.4 0.037 8.1E-07 57.8 6.7 46 154-199 12-71 (441)
310 PRK14722 flhF flagellar biosyn 95.3 0.069 1.5E-06 55.6 8.7 88 175-267 137-225 (374)
311 cd01121 Sms Sms (bacterial rad 95.3 0.063 1.4E-06 56.2 8.3 85 174-267 81-168 (372)
312 COG0488 Uup ATPase components 95.3 0.23 4.9E-06 54.6 12.9 134 174-311 347-510 (530)
313 PTZ00301 uridine kinase; Provi 95.3 0.017 3.7E-07 55.3 3.8 25 175-199 3-27 (210)
314 PRK14974 cell division protein 95.3 0.14 3E-06 52.7 10.6 92 174-268 139-233 (336)
315 PF13671 AAA_33: AAA domain; P 95.2 0.017 3.7E-07 51.8 3.5 23 177-199 1-23 (143)
316 COG0563 Adk Adenylate kinase a 95.2 0.024 5.3E-07 52.6 4.6 23 177-199 2-24 (178)
317 PRK12724 flagellar biosynthesi 95.2 0.073 1.6E-06 55.8 8.5 25 175-199 223-247 (432)
318 KOG1644 U2-associated snRNP A' 95.2 0.019 4.1E-07 52.8 3.6 106 417-532 43-151 (233)
319 PRK06762 hypothetical protein; 95.2 0.019 4E-07 53.1 3.7 25 175-199 2-26 (166)
320 cd02025 PanK Pantothenate kina 95.2 0.093 2E-06 50.8 8.6 23 177-199 1-23 (220)
321 cd03238 ABC_UvrA The excision 95.2 0.097 2.1E-06 48.6 8.4 123 174-310 20-161 (176)
322 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.091 2E-06 51.1 8.4 123 175-300 30-203 (254)
323 TIGR02236 recomb_radA DNA repa 95.1 0.13 2.9E-06 53.0 10.1 59 174-233 94-155 (310)
324 PRK04132 replication factor C 95.1 0.46 1E-05 54.9 15.1 153 183-358 574-731 (846)
325 PRK08699 DNA polymerase III su 95.1 0.64 1.4E-05 47.9 14.9 26 174-199 20-45 (325)
326 KOG2170 ATPase of the AAA+ sup 95.1 0.06 1.3E-06 52.8 6.8 99 155-268 83-189 (344)
327 PRK05201 hslU ATP-dependent pr 95.1 0.052 1.1E-06 56.7 6.9 46 154-199 15-74 (443)
328 TIGR00235 udk uridine kinase. 95.1 0.021 4.5E-07 55.0 3.8 26 174-199 5-30 (207)
329 COG0468 RecA RecA/RadA recombi 95.1 0.11 2.3E-06 51.8 8.7 88 174-266 59-150 (279)
330 TIGR00150 HI0065_YjeE ATPase, 95.1 0.042 9.2E-07 48.0 5.2 39 161-199 6-46 (133)
331 PF03205 MobB: Molybdopterin g 95.1 0.036 7.8E-07 49.3 4.9 39 176-216 1-39 (140)
332 PRK03839 putative kinase; Prov 95.0 0.02 4.3E-07 53.7 3.4 23 177-199 2-24 (180)
333 COG0465 HflB ATP-dependent Zn 95.0 0.19 4.1E-06 55.2 11.1 173 154-354 150-357 (596)
334 PRK05439 pantothenate kinase; 95.0 0.17 3.7E-06 51.3 10.2 83 173-258 84-166 (311)
335 PRK12723 flagellar biosynthesi 95.0 0.14 3.1E-06 53.7 9.9 90 174-267 173-264 (388)
336 TIGR01360 aden_kin_iso1 adenyl 95.0 0.022 4.8E-07 53.9 3.7 26 174-199 2-27 (188)
337 PLN03186 DNA repair protein RA 95.0 0.15 3.2E-06 52.8 9.8 60 174-234 122-184 (342)
338 cd01135 V_A-ATPase_B V/A-type 95.0 0.12 2.7E-06 51.0 8.8 95 174-268 68-177 (276)
339 PRK04328 hypothetical protein; 95.0 0.1 2.2E-06 51.8 8.4 41 174-217 22-62 (249)
340 PF07728 AAA_5: AAA domain (dy 95.0 0.062 1.3E-06 47.9 6.3 43 178-226 2-44 (139)
341 COG1066 Sms Predicted ATP-depe 95.0 0.11 2.5E-06 53.3 8.6 96 163-268 79-179 (456)
342 PRK12678 transcription termina 95.0 0.048 1E-06 58.8 6.3 98 166-268 406-514 (672)
343 COG1428 Deoxynucleoside kinase 94.9 0.023 5E-07 52.9 3.4 25 175-199 4-28 (216)
344 cd02028 UMPK_like Uridine mono 94.9 0.05 1.1E-06 50.8 5.8 23 177-199 1-23 (179)
345 KOG0652 26S proteasome regulat 94.9 0.9 2E-05 43.6 13.8 53 147-199 162-229 (424)
346 KOG1947 Leucine rich repeat pr 94.9 0.0084 1.8E-07 66.3 0.6 86 412-497 184-281 (482)
347 PF12775 AAA_7: P-loop contain 94.9 0.035 7.6E-07 55.6 4.9 90 163-268 22-111 (272)
348 PF07726 AAA_3: ATPase family 94.9 0.031 6.7E-07 47.9 3.8 41 178-224 2-42 (131)
349 cd03223 ABCD_peroxisomal_ALDP 94.9 0.11 2.5E-06 47.8 8.0 26 174-199 26-51 (166)
350 PRK04040 adenylate kinase; Pro 94.9 0.025 5.5E-07 53.2 3.6 25 175-199 2-26 (188)
351 PRK09519 recA DNA recombinatio 94.9 0.092 2E-06 59.7 8.6 86 174-267 59-148 (790)
352 PRK06217 hypothetical protein; 94.9 0.047 1E-06 51.3 5.5 23 177-199 3-25 (183)
353 cd01124 KaiC KaiC is a circadi 94.9 0.12 2.5E-06 48.8 8.2 45 177-226 1-45 (187)
354 KOG0739 AAA+-type ATPase [Post 94.8 0.14 3E-06 50.0 8.5 91 154-268 133-236 (439)
355 PF13481 AAA_25: AAA domain; P 94.8 0.11 2.3E-06 49.5 7.9 42 176-217 33-81 (193)
356 cd03228 ABCC_MRP_Like The MRP 94.8 0.15 3.2E-06 47.3 8.7 26 174-199 27-52 (171)
357 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.15 3.2E-06 45.8 8.3 26 174-199 25-50 (144)
358 KOG3347 Predicted nucleotide k 94.8 0.047 1E-06 47.5 4.6 71 175-258 7-77 (176)
359 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.19 4.1E-06 49.2 9.8 47 174-225 19-65 (229)
360 PRK12726 flagellar biosynthesi 94.8 0.2 4.2E-06 51.9 9.9 89 174-267 205-295 (407)
361 PF00158 Sigma54_activat: Sigm 94.8 0.046 9.9E-07 50.4 5.0 44 156-199 1-46 (168)
362 KOG0729 26S proteasome regulat 94.8 0.22 4.8E-06 47.8 9.4 90 155-268 178-281 (435)
363 PF10236 DAP3: Mitochondrial r 94.8 0.96 2.1E-05 46.4 15.1 49 307-355 258-306 (309)
364 PTZ00035 Rad51 protein; Provis 94.7 0.39 8.5E-06 49.8 12.3 59 174-233 117-178 (337)
365 PTZ00088 adenylate kinase 1; P 94.7 0.03 6.6E-07 54.4 3.9 23 177-199 8-30 (229)
366 PRK05342 clpX ATP-dependent pr 94.7 0.086 1.9E-06 56.1 7.6 46 154-199 71-132 (412)
367 PRK13765 ATP-dependent proteas 94.7 0.062 1.3E-06 60.2 6.8 75 154-233 31-105 (637)
368 PRK00625 shikimate kinase; Pro 94.7 0.026 5.6E-07 52.2 3.2 23 177-199 2-24 (173)
369 KOG2123 Uncharacterized conser 94.7 0.0047 1E-07 59.4 -1.7 105 415-528 18-124 (388)
370 PRK08972 fliI flagellum-specif 94.7 0.08 1.7E-06 55.9 7.0 90 174-268 161-263 (444)
371 PRK05703 flhF flagellar biosyn 94.7 0.12 2.6E-06 55.4 8.4 87 175-266 221-308 (424)
372 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.025 5.4E-07 53.2 3.0 23 177-199 1-23 (183)
373 COG1102 Cmk Cytidylate kinase 94.5 0.03 6.5E-07 49.6 2.9 44 177-234 2-45 (179)
374 PF00006 ATP-synt_ab: ATP synt 94.5 0.15 3.3E-06 48.8 8.1 95 167-268 6-116 (215)
375 cd02023 UMPK Uridine monophosp 94.5 0.026 5.6E-07 53.9 2.9 23 177-199 1-23 (198)
376 cd02024 NRK1 Nicotinamide ribo 94.5 0.028 6E-07 52.6 2.9 23 177-199 1-23 (187)
377 PRK06002 fliI flagellum-specif 94.5 0.13 2.8E-06 54.6 8.2 91 174-268 164-265 (450)
378 PF03308 ArgK: ArgK protein; 94.5 0.069 1.5E-06 51.7 5.6 60 162-222 14-75 (266)
379 COG1703 ArgK Putative periplas 94.5 0.065 1.4E-06 52.7 5.5 61 163-224 37-99 (323)
380 cd03214 ABC_Iron-Siderophores_ 94.5 0.18 3.8E-06 47.3 8.4 120 174-299 24-161 (180)
381 PF06745 KaiC: KaiC; InterPro 94.5 0.073 1.6E-06 52.1 6.0 89 174-267 18-125 (226)
382 PRK08533 flagellar accessory p 94.5 0.24 5.2E-06 48.4 9.5 49 174-227 23-71 (230)
383 cd01129 PulE-GspE PulE/GspE Th 94.5 0.17 3.7E-06 50.5 8.6 105 157-274 62-166 (264)
384 PF00910 RNA_helicase: RNA hel 94.5 0.029 6.2E-07 47.4 2.6 22 178-199 1-22 (107)
385 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.093 2E-06 52.4 6.7 40 174-216 35-74 (259)
386 cd02029 PRK_like Phosphoribulo 94.4 0.76 1.7E-05 45.2 12.5 80 177-259 1-86 (277)
387 PF12061 DUF3542: Protein of u 94.4 0.067 1.4E-06 52.4 5.1 75 12-93 299-373 (402)
388 COG1936 Predicted nucleotide k 94.4 0.032 7E-07 50.1 2.8 20 177-196 2-21 (180)
389 cd03230 ABC_DR_subfamily_A Thi 94.4 0.15 3.3E-06 47.4 7.5 26 174-199 25-50 (173)
390 TIGR00764 lon_rel lon-related 94.3 0.12 2.6E-06 58.1 8.0 75 154-233 18-92 (608)
391 PRK14721 flhF flagellar biosyn 94.3 0.3 6.5E-06 51.8 10.4 25 175-199 191-215 (420)
392 PRK05800 cobU adenosylcobinami 94.3 0.18 4E-06 46.5 7.9 82 177-266 3-85 (170)
393 TIGR02322 phosphon_PhnN phosph 94.3 0.039 8.5E-07 51.7 3.5 24 176-199 2-25 (179)
394 PF08433 KTI12: Chromatin asso 94.3 0.11 2.3E-06 51.9 6.6 25 176-200 2-26 (270)
395 PF01583 APS_kinase: Adenylyls 94.3 0.05 1.1E-06 49.0 3.8 25 175-199 2-26 (156)
396 PRK10751 molybdopterin-guanine 94.3 0.046 9.9E-07 50.2 3.7 26 174-199 5-30 (173)
397 COG0467 RAD55 RecA-superfamily 94.2 0.099 2.1E-06 52.4 6.4 52 173-229 21-72 (260)
398 COG0542 clpA ATP-binding subun 94.2 0.048 1E-06 61.4 4.4 151 155-325 171-345 (786)
399 KOG0735 AAA+-type ATPase [Post 94.2 1.3 2.7E-05 49.0 14.7 91 155-268 668-771 (952)
400 TIGR03575 selen_PSTK_euk L-ser 94.2 0.18 3.9E-06 51.9 8.2 22 178-199 2-23 (340)
401 PRK08149 ATP synthase SpaL; Va 94.2 0.21 4.6E-06 52.9 8.9 90 174-268 150-252 (428)
402 TIGR00665 DnaB replicative DNA 94.2 4.4 9.6E-05 44.0 19.5 54 174-231 194-247 (434)
403 PRK00131 aroK shikimate kinase 94.2 0.045 9.8E-07 51.0 3.6 25 175-199 4-28 (175)
404 PRK05973 replicative DNA helic 94.1 0.34 7.4E-06 47.1 9.6 49 174-227 63-111 (237)
405 PTZ00185 ATPase alpha subunit; 94.1 0.28 6E-06 52.6 9.5 94 174-268 188-300 (574)
406 cd02020 CMPK Cytidine monophos 94.1 0.039 8.4E-07 49.7 2.9 23 177-199 1-23 (147)
407 PRK11823 DNA repair protein Ra 94.1 0.18 3.9E-06 54.5 8.5 85 174-267 79-166 (446)
408 PRK05922 type III secretion sy 94.1 0.15 3.3E-06 54.0 7.7 91 173-268 155-258 (434)
409 CHL00081 chlI Mg-protoporyphyr 94.1 0.071 1.5E-06 55.0 5.0 46 155-200 18-63 (350)
410 PF00625 Guanylate_kin: Guanyl 94.1 0.083 1.8E-06 49.7 5.2 36 175-213 2-37 (183)
411 PRK10416 signal recognition pa 94.1 0.35 7.6E-06 49.6 10.0 26 174-199 113-138 (318)
412 COG3640 CooC CO dehydrogenase 94.1 0.1 2.2E-06 49.4 5.5 42 177-220 2-43 (255)
413 PRK13949 shikimate kinase; Pro 94.0 0.046 9.9E-07 50.6 3.3 23 177-199 3-25 (169)
414 PRK06851 hypothetical protein; 94.0 0.83 1.8E-05 47.5 12.7 44 172-217 211-254 (367)
415 PRK00889 adenylylsulfate kinas 94.0 0.057 1.2E-06 50.4 3.9 26 174-199 3-28 (175)
416 TIGR00073 hypB hydrogenase acc 94.0 0.062 1.3E-06 51.7 4.3 31 169-199 16-46 (207)
417 PRK15453 phosphoribulokinase; 94.0 0.3 6.5E-06 48.4 8.9 80 174-256 4-89 (290)
418 TIGR02030 BchI-ChlI magnesium 94.0 0.078 1.7E-06 54.7 5.1 45 155-199 5-49 (337)
419 TIGR01420 pilT_fam pilus retra 94.0 0.096 2.1E-06 54.7 5.9 114 173-299 120-233 (343)
420 PRK12597 F0F1 ATP synthase sub 94.0 0.15 3.2E-06 54.6 7.3 93 174-268 142-248 (461)
421 PRK14530 adenylate kinase; Pro 93.9 0.05 1.1E-06 52.7 3.4 24 176-199 4-27 (215)
422 PRK13947 shikimate kinase; Pro 93.9 0.049 1.1E-06 50.6 3.2 23 177-199 3-25 (171)
423 cd00227 CPT Chloramphenicol (C 93.9 0.053 1.2E-06 50.6 3.4 24 176-199 3-26 (175)
424 cd02021 GntK Gluconate kinase 93.9 0.046 9.9E-07 49.5 2.9 23 177-199 1-23 (150)
425 COG1124 DppF ABC-type dipeptid 93.8 0.077 1.7E-06 50.6 4.4 26 174-199 32-57 (252)
426 PF08477 Miro: Miro-like prote 93.8 0.056 1.2E-06 46.6 3.2 22 178-199 2-23 (119)
427 TIGR03263 guanyl_kin guanylate 93.8 0.05 1.1E-06 51.0 3.1 24 176-199 2-25 (180)
428 PRK13407 bchI magnesium chelat 93.8 0.078 1.7E-06 54.6 4.6 45 155-199 9-53 (334)
429 cd00071 GMPK Guanosine monopho 93.7 0.058 1.3E-06 47.9 3.3 23 177-199 1-23 (137)
430 COG1419 FlhF Flagellar GTP-bin 93.7 0.67 1.5E-05 48.1 11.2 89 174-267 202-291 (407)
431 KOG0727 26S proteasome regulat 93.7 0.14 3E-06 48.7 5.7 45 155-199 156-213 (408)
432 PF03193 DUF258: Protein of un 93.7 0.097 2.1E-06 47.3 4.6 36 161-199 24-59 (161)
433 PF08298 AAA_PrkA: PrkA AAA do 93.7 0.1 2.2E-06 53.1 5.2 46 154-199 61-112 (358)
434 TIGR00708 cobA cob(I)alamin ad 93.7 0.25 5.4E-06 45.2 7.3 118 175-296 5-140 (173)
435 cd01136 ATPase_flagellum-secre 93.7 0.33 7.2E-06 49.6 9.0 90 174-268 68-170 (326)
436 PRK08927 fliI flagellum-specif 93.7 0.18 3.8E-06 53.6 7.2 90 174-268 157-259 (442)
437 COG0003 ArsA Predicted ATPase 93.6 0.11 2.3E-06 53.1 5.3 49 175-226 2-50 (322)
438 PRK00300 gmk guanylate kinase; 93.6 0.058 1.3E-06 51.8 3.4 26 174-199 4-29 (205)
439 TIGR01040 V-ATPase_V1_B V-type 93.6 0.27 6E-06 52.1 8.4 94 174-268 140-258 (466)
440 PF14532 Sigma54_activ_2: Sigm 93.6 0.081 1.8E-06 47.1 4.0 43 157-199 1-45 (138)
441 TIGR00416 sms DNA repair prote 93.6 0.34 7.3E-06 52.5 9.4 95 164-267 81-180 (454)
442 TIGR02655 circ_KaiC circadian 93.6 0.48 1E-05 52.1 10.7 97 164-266 250-362 (484)
443 COG2019 AdkA Archaeal adenylat 93.6 0.064 1.4E-06 47.8 3.1 25 175-199 4-28 (189)
444 KOG1532 GTPase XAB1, interacts 93.6 0.08 1.7E-06 51.0 3.9 26 174-199 18-43 (366)
445 PRK13975 thymidylate kinase; P 93.6 0.066 1.4E-06 51.0 3.6 24 176-199 3-26 (196)
446 KOG3864 Uncharacterized conser 93.6 0.011 2.4E-07 54.4 -1.7 69 603-682 123-192 (221)
447 KOG0726 26S proteasome regulat 93.6 0.66 1.4E-05 45.3 10.1 45 155-199 186-243 (440)
448 TIGR03498 FliI_clade3 flagella 93.6 0.17 3.8E-06 53.6 6.9 90 174-268 139-241 (418)
449 PRK12339 2-phosphoglycerate ki 93.5 0.075 1.6E-06 50.4 3.8 25 175-199 3-27 (197)
450 PF13504 LRR_7: Leucine rich r 93.5 0.04 8.6E-07 29.0 1.1 16 438-453 2-17 (17)
451 cd01132 F1_ATPase_alpha F1 ATP 93.5 0.3 6.5E-06 48.3 8.1 89 174-269 68-173 (274)
452 PRK05057 aroK shikimate kinase 93.5 0.072 1.6E-06 49.4 3.6 25 175-199 4-28 (172)
453 TIGR03305 alt_F1F0_F1_bet alte 93.5 0.23 5E-06 52.9 7.7 93 174-268 137-243 (449)
454 cd00820 PEPCK_HprK Phosphoenol 93.5 0.071 1.5E-06 44.5 3.1 22 175-196 15-36 (107)
455 TIGR00176 mobB molybdopterin-g 93.5 0.091 2E-06 47.7 4.1 34 177-212 1-34 (155)
456 PRK00409 recombination and DNA 93.5 3 6.5E-05 48.6 17.3 179 173-379 325-526 (782)
457 PRK06995 flhF flagellar biosyn 93.5 0.3 6.6E-06 52.7 8.6 58 175-233 256-314 (484)
458 PRK14527 adenylate kinase; Pro 93.4 0.076 1.6E-06 50.3 3.7 26 174-199 5-30 (191)
459 PF13245 AAA_19: Part of AAA d 93.4 0.19 4.2E-06 39.2 5.3 26 174-199 9-35 (76)
460 KOG1051 Chaperone HSP104 and r 93.4 0.35 7.6E-06 55.6 9.4 101 155-269 563-672 (898)
461 TIGR02902 spore_lonB ATP-depen 93.4 0.1 2.3E-06 57.7 5.2 45 155-199 66-110 (531)
462 PF03215 Rad17: Rad17 cell cyc 93.4 0.11 2.5E-06 56.8 5.4 54 155-213 20-78 (519)
463 PRK14723 flhF flagellar biosyn 93.4 0.34 7.4E-06 55.0 9.2 25 175-199 185-209 (767)
464 cd00464 SK Shikimate kinase (S 93.4 0.068 1.5E-06 48.6 3.2 22 178-199 2-23 (154)
465 TIGR01313 therm_gnt_kin carboh 93.4 0.058 1.3E-06 49.6 2.7 22 178-199 1-22 (163)
466 PRK10078 ribose 1,5-bisphospho 93.3 0.067 1.4E-06 50.5 3.2 24 176-199 3-26 (186)
467 cd01672 TMPK Thymidine monopho 93.3 0.17 3.8E-06 48.2 6.1 23 177-199 2-24 (200)
468 TIGR02640 gas_vesic_GvpN gas v 93.3 0.22 4.9E-06 49.8 7.0 54 163-224 11-64 (262)
469 COG1763 MobB Molybdopterin-gua 93.3 0.072 1.6E-06 48.2 3.1 25 175-199 2-26 (161)
470 COG1126 GlnQ ABC-type polar am 93.3 0.073 1.6E-06 49.8 3.2 26 174-199 27-52 (240)
471 PRK03846 adenylylsulfate kinas 93.3 0.087 1.9E-06 50.2 3.9 27 173-199 22-48 (198)
472 cd02027 APSK Adenosine 5'-phos 93.3 0.067 1.4E-06 48.3 2.9 23 177-199 1-23 (149)
473 PF02374 ArsA_ATPase: Anion-tr 93.3 0.098 2.1E-06 53.4 4.4 47 176-225 2-48 (305)
474 TIGR03600 phage_DnaB phage rep 93.3 5.5 0.00012 43.0 18.2 54 174-231 193-246 (421)
475 PRK09280 F0F1 ATP synthase sub 93.3 0.31 6.8E-06 52.0 8.2 93 174-268 143-249 (463)
476 TIGR02788 VirB11 P-type DNA tr 93.2 0.14 3E-06 52.6 5.5 113 174-298 143-255 (308)
477 PRK06936 type III secretion sy 93.2 0.25 5.4E-06 52.4 7.4 90 174-268 161-263 (439)
478 TIGR00041 DTMP_kinase thymidyl 93.2 0.21 4.5E-06 47.5 6.3 24 176-199 4-27 (195)
479 PRK05748 replicative DNA helic 93.2 4.8 0.0001 43.9 17.6 55 174-232 202-256 (448)
480 cd03281 ABC_MSH5_euk MutS5 hom 93.1 0.096 2.1E-06 50.5 3.9 23 175-197 29-51 (213)
481 PF03029 ATP_bind_1: Conserved 93.1 0.11 2.5E-06 50.8 4.5 32 180-214 1-32 (238)
482 PF13521 AAA_28: AAA domain; P 93.1 0.073 1.6E-06 49.0 3.0 21 178-198 2-22 (163)
483 PF03266 NTPase_1: NTPase; In 93.1 0.08 1.7E-06 48.8 3.2 22 178-199 2-23 (168)
484 KOG0927 Predicted transporter 93.1 4.6 9.9E-05 43.5 16.2 137 157-298 397-568 (614)
485 PRK05986 cob(I)alamin adenolsy 93.1 0.25 5.4E-06 46.0 6.3 118 174-296 21-158 (191)
486 PLN02200 adenylate kinase fami 93.1 0.094 2E-06 51.3 3.8 26 174-199 42-67 (234)
487 PRK13948 shikimate kinase; Pro 93.1 0.1 2.2E-06 48.7 3.8 26 174-199 9-34 (182)
488 PF01078 Mg_chelatase: Magnesi 93.1 0.15 3.3E-06 48.0 5.0 44 155-200 4-47 (206)
489 COG3854 SpoIIIAA ncharacterize 93.0 0.4 8.6E-06 45.3 7.5 119 166-300 128-257 (308)
490 PRK13946 shikimate kinase; Pro 93.0 0.087 1.9E-06 49.6 3.4 25 175-199 10-34 (184)
491 PRK14737 gmk guanylate kinase; 93.0 0.099 2.1E-06 49.1 3.7 26 174-199 3-28 (186)
492 cd01122 GP4d_helicase GP4d_hel 93.0 0.71 1.5E-05 46.5 10.2 53 174-230 29-81 (271)
493 PRK05688 fliI flagellum-specif 93.0 0.28 6E-06 52.3 7.3 90 174-268 167-269 (451)
494 PRK04182 cytidylate kinase; Pr 92.9 0.094 2E-06 49.1 3.5 23 177-199 2-24 (180)
495 COG1224 TIP49 DNA helicase TIP 92.9 0.23 4.9E-06 50.0 6.1 54 153-207 38-96 (450)
496 PRK08760 replicative DNA helic 92.9 7.2 0.00016 42.7 18.3 54 174-231 228-281 (476)
497 COG3598 RepA RecA-family ATPas 92.9 0.4 8.6E-06 47.6 7.6 59 177-235 91-157 (402)
498 cd03282 ABC_MSH4_euk MutS4 hom 92.8 0.13 2.9E-06 49.1 4.4 25 174-198 28-52 (204)
499 COG0714 MoxR-like ATPases [Gen 92.8 0.27 5.8E-06 51.1 7.0 66 155-228 25-90 (329)
500 COG0396 sufC Cysteine desulfur 92.7 0.64 1.4E-05 44.1 8.4 64 244-310 149-218 (251)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-72 Score=629.55 Aligned_cols=680 Identities=37% Similarity=0.597 Sum_probs=540.1
Q ss_pred hhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 048789 12 DDSVSHCLDCSVRKAGYICHLQDNLDALQRELQMLIEERNDVRVRVIVAEQQQMKRLERVQGWLSRVEKVESRVGKLIRK 91 (724)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~~~~~~~~~~Wl~~lr~~~yd~ed~ld~ 91 (724)
+..++++.+++.+++..+.+.++.+..|++++..++.+++| |+.++. ....+..|...+++++|+++|+++.
T Consensus 6 s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRD-DLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred EEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888899999999999999999999999999999999 555543 3477889999999999999999999
Q ss_pred Chhhhhh----------------cccCCCCCccchhhchHhHHHHHHHHHHHHHHhcCCCccccc-CCCCCCCCCCCCCC
Q 048789 92 SPQQVEK----------------ICLGGFCSNSCKSSYKFGKKVVKALRLVQSLRKQGDFQDVAQ-PAPENPVDERPLPA 154 (724)
Q Consensus 92 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 154 (724)
|..+... -|..++|.+.....+.+++++.+..+.++.+..++.|..++. ..+......+|..+
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCc
Confidence 8754432 233456666677778888999999999988887776766654 22333333444433
Q ss_pred cc-ccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 155 TV-VGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 155 ~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.. ||.++.++++++.|.+++..+++|+||||+||||||++++|+...++.+|+.++||.||+.++..+++++|+..++.
T Consensus 158 ~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 33 99999999999999998889999999999999999999999994489999999999999999999999999999988
Q ss_pred CccccCCcCHHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhh-ccCccceeecc
Q 048789 234 FNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQ-MEAHRSFKVEC 312 (724)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~-~~~~~~~~l~~ 312 (724)
.+........++++..|.+.|++|||++|+||||+..+|+.++.++|...+| |+|++|||++.||.. +++...+++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g-~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENG-SKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCC-eEEEEEeccHhhhhccccCCccccccc
Confidence 6655455556899999999999999999999999999999999999999888 999999999999998 88888999999
Q ss_pred CChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcCCChhHHHHHHHHHhhcc-cc-------
Q 048789 313 LGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASRKTPREWEHAIEVLRCSA-SQ------- 384 (724)
Q Consensus 313 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~-~~------- 384 (724)
|+.++||.+|.+.+|.......+.++++|++++++|+|+|||++++|++|+.+.++.+|+++.+.+.+.. ..
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 9999999999999998865666779999999999999999999999999999999999999998876651 11
Q ss_pred --------------------------------------------------------------------------------
Q 048789 385 -------------------------------------------------------------------------------- 384 (724)
Q Consensus 385 -------------------------------------------------------------------------------- 384 (724)
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~ 476 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEG 476 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccc
Confidence
Q ss_pred -------------------------------------------------------------CCCCCCCCcceEEEeeccc
Q 048789 385 -------------------------------------------------------------FSESPVCPRLRTLFLSSNI 403 (724)
Q Consensus 385 -------------------------------------------------------------~~~~~~~~~Lr~L~l~~~~ 403 (724)
+.....+++|++|.+.+|.
T Consensus 477 ~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 477 RKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNS 556 (889)
T ss_pred ceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecc
Confidence 2334567889999999996
Q ss_pred --ccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccCh
Q 048789 404 --FHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPP 478 (724)
Q Consensus 404 --~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~ 478 (724)
+...+..+|..|+.||+|||++|. ++|++|+.|.|||||++++|.++.||.++++|++|.+|++..+..+..+|
T Consensus 557 ~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~- 635 (889)
T KOG4658|consen 557 DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP- 635 (889)
T ss_pred hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-
Confidence 677888889999999999999888 89999999999999999999999999999999999999999987666664
Q ss_pred hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeecc
Q 048789 479 KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHF 558 (724)
Q Consensus 479 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~ 558 (724)
+++..|++||+|.+.... . ......+.++..|.+|+.+.+......-+..+.....+.. ....+.+.++
T Consensus 636 ~i~~~L~~Lr~L~l~~s~-~---------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~-~~~~l~~~~~ 704 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSA-L---------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS-LLQSLSIEGC 704 (889)
T ss_pred chhhhcccccEEEeeccc-c---------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH-HhHhhhhccc
Confidence 446779999999998543 1 1245677888889999988886555522233322222211 2233333332
Q ss_pred CCCCcccccccccccccceEEeecCCcceEEEccCCc---------ccc-----------ccc-cCCCCcceEEEecCcc
Q 048789 559 NNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGE---------VKR-----------VRE-LSAPNLKRVEIENCQD 617 (724)
Q Consensus 559 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~---------l~~-----------L~~-~~l~~L~~L~l~~c~~ 617 (724)
.. .....++..+.+|+.|.+.+++..+....|... +.+ +.. ...|+|+.|.+..|..
T Consensus 705 ~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 705 SK--RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred cc--ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 21 112225677889999999986665433334221 110 110 4679999999999999
Q ss_pred hhhhhccCCCCCcccccccCCCccccccee-ccccccccccccCCCCCCCCccEEeecCCCCCCCCCCCCCCCCC---cc
Q 048789 618 MEEIISSEKLSEVPAEVMENLIPFARLERL-ILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLDCNRGLE---RK 693 (724)
Q Consensus 618 l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L-~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~---~l 693 (724)
++.+++........ ......|+++..+ .+.+.+.+..+.+....+++|+.+.+..||+++.+|........ ..
T Consensus 783 ~e~~i~~~k~~~~l---~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~ 859 (889)
T KOG4658|consen 783 LEDIIPKLKALLEL---KELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEK 859 (889)
T ss_pred cccCCCHHHHhhhc---ccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccc
Confidence 99886643221110 0113457788888 68888888888888888999999999999999999998655332 33
Q ss_pred eEEechhhhhhcccccchhhhhhc
Q 048789 694 IIIKGQRRWWNELQWYDEATQNAF 717 (724)
Q Consensus 694 ~~~~~~~~~~~~l~w~~~~~~~~~ 717 (724)
.....+.+|-+.++|.+++.+..+
T Consensus 860 ~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 860 LKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeecCCccceeeEEehhhhhhhhc
Confidence 444445667778899999887655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-47 Score=456.16 Aligned_cols=502 Identities=19% Similarity=0.271 Sum_probs=332.9
Q ss_pred CccccchhhHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe---CCc-----------
Q 048789 154 ATVVGLQSTFDGVWKCLM--EEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV---SKD----------- 217 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v---~~~----------- 217 (724)
+.+|||+.+++++..+|. .+++++|+||||||+||||||+.+|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999999875 3578999999999999999999999987 678998888742 111
Q ss_pred CC-HHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCCh
Q 048789 218 LQ-LAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREI 296 (724)
Q Consensus 218 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~ 296 (724)
.+ ...++++++.++...... .... ...+++.++++|+||||||||+..+|+.+.......+.| |+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~-~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~G-srIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDI-KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG-SRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCc-ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCC-cEEEEEeCcH
Confidence 01 123445555544322110 1111 245778899999999999999999999887665555677 9999999999
Q ss_pred HHHhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcCCChhHHHHHHH
Q 048789 297 EVCGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASRKTPREWEHAIE 376 (724)
Q Consensus 297 ~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~ 376 (724)
+++..++....|+++.+++++||++|+++||+.. ..+.++.+++++|+++|+|+|||++++|+.|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998877788999999999999999999999765 334568899999999999999999999999998 57899999988
Q ss_pred HHhhcccc------------------------------------------------------------------------
Q 048789 377 VLRCSASQ------------------------------------------------------------------------ 384 (724)
Q Consensus 377 ~l~~~~~~------------------------------------------------------------------------ 384 (724)
.+...+..
T Consensus 413 ~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHd 492 (1153)
T PLN03210 413 RLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHS 492 (1153)
T ss_pred HHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhh
Confidence 77653221
Q ss_pred ----------------------------------------------C------------CCCCCCCcceEEEee------
Q 048789 385 ----------------------------------------------F------------SESPVCPRLRTLFLS------ 400 (724)
Q Consensus 385 ----------------------------------------------~------------~~~~~~~~Lr~L~l~------ 400 (724)
+ ..+..+++|+.|.+.
T Consensus 493 Ll~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 493 LLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc
Confidence 0 001233444444443
Q ss_pred -------------------------cccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCC-Ccccc
Q 048789 401 -------------------------SNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHS-RIERL 452 (724)
Q Consensus 401 -------------------------~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~-~i~~L 452 (724)
++.+...+.. | .+.+|+.|++.++. .+|..+..+++|++|+|+++ .+..+
T Consensus 573 ~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 573 KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred cccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC
Confidence 3322222222 2 24567777777766 66767777777777777765 45566
Q ss_pred chHHhccccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcc-------cchHHh-hcCCCCC
Q 048789 453 PIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCR-------VLVEEL-LCLEHLS 524 (724)
Q Consensus 453 p~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-------~~~~~L-~~L~~L~ 524 (724)
| .++.+++|++|++++|..+..+|.. ++++++|++|++.+|..+..+|..+.-.... ..+..+ ....+|+
T Consensus 651 p-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~ 728 (1153)
T PLN03210 651 P-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728 (1153)
T ss_pred C-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcC
Confidence 6 3666777777777777666667765 6777777777777666555444321000000 000000 0123444
Q ss_pred eEEEEEcchhhhHHHhcccccc--------------------------ccccCcEEeeccCCCCcccccccccccccceE
Q 048789 525 VFTITLNNFHALQRLLDSCMLQ--------------------------YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTL 578 (724)
Q Consensus 525 ~L~i~~~~~~~~~~~~~~~~l~--------------------------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 578 (724)
.|++..+.+..++.......+. ..+|+.|.++++.....++. .+..+++|+.|
T Consensus 729 ~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L 807 (1153)
T PLN03210 729 WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHL 807 (1153)
T ss_pred eeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEE
Confidence 4555444433333211100000 01345555555443333332 35556667777
Q ss_pred EeecC-CcceEEEccCCccccccccCCCCcceEEEecCcchhhhhc-----------cCCCCCcccccccCCCcccccce
Q 048789 579 HLTYN-DLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIIS-----------SEKLSEVPAEVMENLIPFARLER 646 (724)
Q Consensus 579 ~l~~~-~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~-----------~~~~~~~~~~~~~~~~~fp~L~~ 646 (724)
++++| .++.+ |..+ .+++|+.|++++|..+..+.. .+.+..+| .....+++|+.
T Consensus 808 ~Ls~C~~L~~L-P~~~---------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP----~si~~l~~L~~ 873 (1153)
T PLN03210 808 EIENCINLETL-PTGI---------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP----WWIEKFSNLSF 873 (1153)
T ss_pred ECCCCCCcCee-CCCC---------CccccCEEECCCCCccccccccccccCEeECCCCCCccCh----HHHhcCCCCCE
Confidence 77663 34432 3322 367888899988877665421 12222222 34567899999
Q ss_pred eccccccccccccCCCCCCCCccEEeecCCCCCCCCCCC
Q 048789 647 LILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLD 685 (724)
Q Consensus 647 L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~ 685 (724)
|+|.+|++|+.++.....+++|+.+.+++|++|+.++..
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 999999999999988888999999999999999987654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.7e-33 Score=284.07 Aligned_cols=222 Identities=33% Similarity=0.614 Sum_probs=182.2
Q ss_pred chhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcc
Q 048789 159 LQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNE 236 (724)
Q Consensus 159 r~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 236 (724)
||.++++|.+.|.+ ++.++|+|+|+||+||||||..++++. ..+.+|+.++|+.++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999986 368999999999999999999999999999988754
Q ss_pred cc-CCcCHHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhhccC-ccceeeccCC
Q 048789 237 SW-QSKGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQMEA-HRSFKVECLG 314 (724)
Q Consensus 237 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~~~~-~~~~~l~~L~ 314 (724)
.. ...+.++....+++.+.++++|+||||||+...|+.+...++....| ++||+|||+..++..+.. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~-~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSG-SKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS--EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 33 56678889999999999999999999999999999998888877777 999999999999877665 6789999999
Q ss_pred hHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcCCChhHHHHHHHHHhhcc
Q 048789 315 FDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASRKTPREWEHAIEVLRCSA 382 (724)
Q Consensus 315 ~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 382 (724)
.++|++||.+.++.......+...+.+++|+++|+|+|||+.++|++|+.+.+..+|+++++.+....
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~ 226 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSL 226 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986552334566778999999999999999999999977668899999998877654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=5.5e-17 Score=194.67 Aligned_cols=266 Identities=23% Similarity=0.215 Sum_probs=158.9
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCcc-ccchHHhccccCcEe
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNLKCL 465 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L 465 (724)
.+++|++|++++|.+....+..+..+++|++|++++|. .+|..++++++|++|++++|.+. .+|..++++.+|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 46778888888887766666678888888888888877 67888888888888888888765 678888888888888
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhh-hHHHhcccc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHA-LQRLLDSCM 544 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~-~~~~~~~~~ 544 (724)
++++|.....+|.. ++++++|++|++.+|.... ..+..+..+++|+.|.++.+.+.. ++..+...
T Consensus 218 ~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l- 283 (968)
T PLN00113 218 YLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG------------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL- 283 (968)
T ss_pred ECcCCccCCcCChh-HhcCCCCCEEECcCceecc------------ccChhHhCCCCCCEEECcCCeeeccCchhHhhc-
Confidence 88888655567766 7888888888887765322 233456667777777776555431 22111111
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhc-
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIIS- 623 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~- 623 (724)
.+|+.|+++++.-... ....+..+++|+.|++++|.+.+..|.++. .+++|+.|++++|.....+..
T Consensus 284 ---~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 284 ---QKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALT--------SLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred ---cCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCccCCcCChhHh--------cCCCCCEEECcCCCCcCcCChH
Confidence 1566666665432212 122345666777777777666554555543 345555555555432111100
Q ss_pred -------------cCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCC
Q 048789 624 -------------SEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPL 684 (724)
Q Consensus 624 -------------~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 684 (724)
.+.+. ...+.....+++|+.|.+.++.-...++.....+++|+.|.+.+|.--..+|.
T Consensus 352 l~~~~~L~~L~Ls~n~l~---~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLT---GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred HhCCCCCcEEECCCCeeE---eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 00000 00001222345566666655433233333344577888888877754444443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=1.3e-16 Score=191.44 Aligned_cols=278 Identities=21% Similarity=0.235 Sum_probs=155.6
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCcc-ccchHHhccccCcE
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNLKC 464 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~ 464 (724)
..+++|++|++++|.+....|..+.++++|++|++++|. .+|..++++.+|++|+|++|.+. .+|..++++++|++
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 446778888888877666666667778888888887777 57777788888888888877665 67777788888888
Q ss_pred eecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccc-----------cCC-cccchHHhhcCCCCCeEEEEEcc
Q 048789 465 LNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSIL-----------FGD-CRVLVEELLCLEHLSVFTITLNN 532 (724)
Q Consensus 465 L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~-----------~~~-~~~~~~~L~~L~~L~~L~i~~~~ 532 (724)
|++++|.....+|.. ++++++|++|++.+|.....+|..+. ... ....+..+..+++|+.|++..+.
T Consensus 241 L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 241 LDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred EECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 888777544556665 77788888887776643322111100 000 01112233444455555544433
Q ss_pred hhh-hHHHhccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccc----------
Q 048789 533 FHA-LQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRE---------- 601 (724)
Q Consensus 533 ~~~-~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~---------- 601 (724)
+.. .+..+.. ..+|+.|.++++.....++ ..+..+++|+.|++++|.+.+..|.++..+.+|..
T Consensus 320 ~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 320 FTGKIPVALTS----LPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred cCCcCChhHhc----CCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 321 1111111 0145555555443221111 23455566666666666665544555443222211
Q ss_pred ------cCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecC
Q 048789 602 ------LSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDG 675 (724)
Q Consensus 602 ------~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~ 675 (724)
..+++|+.|++.+|.....+ +.....+++|+.|+++++.--..++.....+++|+.|.+++
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~-------------p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGEL-------------PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeEC-------------ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 12344444444444311111 12334567777777776443333333445688899999998
Q ss_pred CCCCCCCCCC
Q 048789 676 CPLLKKLPLD 685 (724)
Q Consensus 676 C~~L~~lp~~ 685 (724)
|.-...+|..
T Consensus 462 n~~~~~~p~~ 471 (968)
T PLN00113 462 NKFFGGLPDS 471 (968)
T ss_pred ceeeeecCcc
Confidence 8776666654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=2.4e-17 Score=169.48 Aligned_cols=270 Identities=24% Similarity=0.274 Sum_probs=157.0
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhh-hccccCCeeecCCCCccccchHHhccccCcEe
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEI-SKVVSLQHLDLSHSRIERLPIEFKYLVNLKCL 465 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i-~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 465 (724)
-.+..|.+|+|+.|.+...|.. +...+++-+|+|++++ .+|.++ -+|..|-+|+||+|++..||..+..|.+|++|
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccccceeeecchhhhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 3455666666666666555433 5566666666666666 566543 35666666666666666666666666666666
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCML 545 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l 545 (724)
+|++|+. ..+--.-+-.|++|+.|++++.... ....+..+..|.+|+.++++.+++..+|...-..
T Consensus 179 ~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRT-----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l-- 244 (1255)
T KOG0444|consen 179 KLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRT-----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL-- 244 (1255)
T ss_pred hcCCChh-hHHHHhcCccchhhhhhhcccccch-----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhh--
Confidence 6666641 1111000223445555555543221 2334455677788888888888887776533221
Q ss_pred cccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc-------ch
Q 048789 546 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ-------DM 618 (724)
Q Consensus 546 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~-------~l 618 (724)
.+|+.|+|+++ .++.+.. ....-.+|++|+++.|.++. .|+.++.+++|......+ -.|.+.+.+ .+
T Consensus 245 --~~LrrLNLS~N-~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 245 --RNLRRLNLSGN-KITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred --hhhheeccCcC-ceeeeec-cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhh
Confidence 25667777663 2333322 22334678888888888776 366666544333311110 111222111 11
Q ss_pred hhhhc-cCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCC
Q 048789 619 EEIIS-SEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPL 684 (724)
Q Consensus 619 ~~l~~-~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 684 (724)
+.+.. .+.+.- ++.....+++|+.|.|.+ ..|-.+|....-+|.|+.|++...|+|-.-|-
T Consensus 319 evf~aanN~LEl----VPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 319 EVFHAANNKLEL----VPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHHhhcccccc----CchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 11111 122222 224566789999999965 78888888888899999999999999987664
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=2.2e-15 Score=180.98 Aligned_cols=218 Identities=22% Similarity=0.319 Sum_probs=142.4
Q ss_pred CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCccccccccc
Q 048789 428 PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILF 507 (724)
Q Consensus 428 ~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 507 (724)
.+|..+ .+.+|+.|+++++.+..+|.++..+.+|+.|++++|..+..+|. ++.+++|++|++.+|..+..
T Consensus 603 ~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~------- 672 (1153)
T PLN03210 603 CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVE------- 672 (1153)
T ss_pred CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccc-------
Confidence 344333 34667777777777777777777777788888877766667774 67777888888877765433
Q ss_pred CCcccchHHhhcCCCCCeEEEEEc-chhhhHHHhccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcc
Q 048789 508 GDCRVLVEELLCLEHLSVFTITLN-NFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLE 586 (724)
Q Consensus 508 ~~~~~~~~~L~~L~~L~~L~i~~~-~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 586 (724)
.+..+..+++|+.|.++.+ .+..++... . ..+|+.|.+++|.....++. .+.+|+.|++++|.+.
T Consensus 673 -----lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~--l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 673 -----LPSSIQYLNKLEDLDMSRCENLEILPTGI---N--LKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE 738 (1153)
T ss_pred -----cchhhhccCCCCEEeCCCCCCcCccCCcC---C--CCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence 2344567788888877643 333333211 1 12677888887765443321 2457888888887776
Q ss_pred eEEEccCCccccccc-----------------------cCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccc
Q 048789 587 EIKIDNGGEVKRVRE-----------------------LSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFAR 643 (724)
Q Consensus 587 ~~~~~~~~~l~~L~~-----------------------~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~ 643 (724)
.+ |..+ .+.+|.. ..+++|+.|.|++|+.+..+. ...+.+++
T Consensus 739 ~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-------------~si~~L~~ 803 (1153)
T PLN03210 739 EF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-------------SSIQNLHK 803 (1153)
T ss_pred cc-cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-------------hhhhCCCC
Confidence 64 4332 1111111 123567777777766554442 24567899
Q ss_pred cceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCC
Q 048789 644 LERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLD 685 (724)
Q Consensus 644 L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~ 685 (724)
|+.|+|++|.+|+.+|... .+++|+.|.+++|.+++.+|..
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 9999999999999988654 6899999999999998887743
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=2.1e-16 Score=162.66 Aligned_cols=267 Identities=21% Similarity=0.275 Sum_probs=182.9
Q ss_pred CCCCCcceEEEeecccc--cccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHH-hccccC
Q 048789 388 SPVCPRLRTLFLSSNIF--HRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEF-KYLVNL 462 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~--~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i-~~L~~L 462 (724)
...+++||++++..|.+ +.+|++ +-.+..|.+|||+++. +.|..+..-+++-.|+||+|+|.++|.++ -+|+-|
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 45678999999999985 355666 5579999999999999 99999999999999999999999999874 589999
Q ss_pred cEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh--hhHHHh
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH--ALQRLL 540 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~--~~~~~~ 540 (724)
-.|||++| .+..+|+. +..|.+|++|.+++|+.. ..-+..|-++++|..|.++..+.+ .+|.-.
T Consensus 153 LfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 153 LFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred hhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh------------HHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 99999998 58999998 999999999999987642 223445556667777777654432 222111
Q ss_pred ccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecC-----
Q 048789 541 DSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENC----- 615 (724)
Q Consensus 541 ~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c----- 615 (724)
... .+|..++++.++ +..++ ..+-.+++|+.|+|++|.++++... .+.-.+|+.|.++..
T Consensus 219 d~l----~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNLS~N~iteL~~~---------~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 219 DDL----HNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNLSGNKITELNMT---------EGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred hhh----hhhhhccccccC-CCcch-HHHhhhhhhheeccCcCceeeeecc---------HHHHhhhhhhccccchhccc
Confidence 111 156666666533 22222 2466789999999999988865221 011233444444332
Q ss_pred -------cchhhhhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCCCC
Q 048789 616 -------QDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLDCN 687 (724)
Q Consensus 616 -------~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~ 687 (724)
+.++.+...++--.+ ++.++..|.+..|+.+...+ .+|+-.|.+...++.|+.|.+ +|..|-.||.+..
T Consensus 284 P~avcKL~kL~kLy~n~NkL~F-eGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTF-EGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIH 359 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccc-cCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhh
Confidence 222222221111011 12335667777888887776 677777777778888888887 4678888887654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.52 E-value=1.7e-15 Score=155.13 Aligned_cols=254 Identities=21% Similarity=0.263 Sum_probs=170.8
Q ss_pred CCCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hhccccCCeeecCCCCcccc-chHHhcccc
Q 048789 386 SESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-ISKVVSLQHLDLSHSRIERL-PIEFKYLVN 461 (724)
Q Consensus 386 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~ 461 (724)
+.++.-.++..|+|.+|.++.+..+.|.++.+|-.|.|+.++ .+|.- +.+|++|+.|+|..|.|+.. .-.+..|.+
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence 445666778888888888877777778888888888888888 67654 44588888888888877644 345677888
Q ss_pred CcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHH-Hh
Q 048789 462 LKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQR-LL 540 (724)
Q Consensus 462 L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~-~~ 540 (724)
|+.|.+..| .+..+.++++..|.++++|++..|.... ..-+.|-.|+.|+.|+++.+.++.+.. -.
T Consensus 247 l~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 247 LQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQA------------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred hhhhhhhhc-CcccccCcceeeecccceeecccchhhh------------hhcccccccchhhhhccchhhhheeecchh
Confidence 888888777 4677777778888888888887664321 112235667788888888777665431 11
Q ss_pred ccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhh
Q 048789 541 DSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEE 620 (724)
Q Consensus 541 ~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~ 620 (724)
..+. +|+.|+|+. +.++.++..+|.-++.|++|.|+.|.+..+.-..+. .+++|+.|+|++.. +..
T Consensus 314 sftq----kL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~--------~lssL~~LdLr~N~-ls~ 379 (873)
T KOG4194|consen 314 SFTQ----KLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV--------GLSSLHKLDLRSNE-LSW 379 (873)
T ss_pred hhcc----cceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHH--------HhhhhhhhcCcCCe-EEE
Confidence 1122 566666665 445666666667777777777777766654333332 35677777776553 222
Q ss_pred hhccCCCCCcccccccCCCcccccceeccccccccccccC-CCCCCCCccEEeecCC
Q 048789 621 IISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHS-KALPFPCLKEMSVDGC 676 (724)
Q Consensus 621 l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~-~~~~~p~L~~L~i~~C 676 (724)
.+.+. . ....++|+|++|.|.+ .+|+.++. ....++.||+|++.+-
T Consensus 380 ~IEDa---a------~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 380 CIEDA---A------VAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred EEecc---h------hhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 22210 0 1344599999999998 78888876 3456888999988774
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=6.1e-15 Score=151.19 Aligned_cols=104 Identities=25% Similarity=0.363 Sum_probs=77.5
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccch-HHhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l 467 (724)
.+|..|+|.+|.+..+....+..++.||+|||+.+. ++|. ++..-.++++|+|++|.|+.+-. .+.+|.+|-+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 457788888888777777777778888888888887 5553 34455778888888888876643 3667778888888
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccC
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
+.| .+..+|...+.+|++|+.|++..|.
T Consensus 205 srN-rittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 205 SRN-RITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred ccC-cccccCHHHhhhcchhhhhhccccc
Confidence 877 4777887767778888888887553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.40 E-value=7.9e-14 Score=137.03 Aligned_cols=85 Identities=33% Similarity=0.455 Sum_probs=79.0
Q ss_pred CCCCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccC
Q 048789 385 FSESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNL 462 (724)
Q Consensus 385 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L 462 (724)
+|.+++|..|..|.+..|.+...+....+++.+|.+|||..++ +.|+.++.|.+|.+||+|+|.|+.||.++++| +|
T Consensus 221 lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HL 299 (565)
T ss_pred CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-ee
Confidence 7788999999999999999888888888899999999999999 99999999999999999999999999999999 89
Q ss_pred cEeecCCc
Q 048789 463 KCLNLEYT 470 (724)
Q Consensus 463 ~~L~l~~~ 470 (724)
+.|-+.+|
T Consensus 300 ~~L~leGN 307 (565)
T KOG0472|consen 300 KFLALEGN 307 (565)
T ss_pred eehhhcCC
Confidence 99998777
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=8.5e-14 Score=136.80 Aligned_cols=101 Identities=26% Similarity=0.391 Sum_probs=76.7
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCc
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYT 470 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~ 470 (724)
.+..|++++|.+....++ +..+..|.+|+++++. .+|.+|+.+..++.|+.++|++..+|+.++++.+|.+|+++++
T Consensus 46 ~l~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 456677777776666555 6777788888888877 7888888888888888888888888888888888888888877
Q ss_pred ccccccChhhhcCCCcCcEEeccccC
Q 048789 471 YGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 471 ~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
...++|++ |+.+..|..|+...|.
T Consensus 125 -~~~el~~~-i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 125 -ELKELPDS-IGRLLDLEDLDATNNQ 148 (565)
T ss_pred -ceeecCch-HHHHhhhhhhhccccc
Confidence 35677776 7778778877776554
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=1.8e-13 Score=119.02 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=126.6
Q ss_pred CCCCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccC
Q 048789 385 FSESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNL 462 (724)
Q Consensus 385 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L 462 (724)
++....+..+..|-+++|.++.++|. +..+.+|.+|++.++. ++|.+|+.|+.|+.|+++-|++..+|.++++++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 45555667788889999998888777 7889999999999999 99999999999999999999999999999999999
Q ss_pred cEeecCCcccc-cccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhc
Q 048789 463 KCLNLEYTYGV-LKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLD 541 (724)
Q Consensus 463 ~~L~l~~~~~~-~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~ 541 (724)
++||+.+|+.. ..+|.+ +-.|..|+.|++..|. -...+.++++|++|+.|.+..+++-+++.
T Consensus 105 evldltynnl~e~~lpgn-ff~m~tlralyl~dnd-------------fe~lp~dvg~lt~lqil~lrdndll~lpk--- 167 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDND-------------FEILPPDVGKLTNLQILSLRDNDLLSLPK--- 167 (264)
T ss_pred hhhhccccccccccCCcc-hhHHHHHHHHHhcCCC-------------cccCChhhhhhcceeEEeeccCchhhCcH---
Confidence 99999988532 357766 7778889999888653 23455677888999888877666543332
Q ss_pred cccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceE
Q 048789 542 SCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEI 588 (724)
Q Consensus 542 ~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 588 (724)
.++.+..|++|+|.||.++-+
T Consensus 168 --------------------------eig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 168 --------------------------EIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred --------------------------HHHHHHHHHHHhcccceeeec
Confidence 244566788888888887754
No 14
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=4.3e-09 Score=106.58 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=121.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
.+.+++.|+|++|+||||+++.+++.. .. ..+ ..+|+ +....+..+++..|+..++.+.. ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 456689999999999999999999987 21 111 22333 33345778899999998876532 2222333333333
Q ss_pred H-----HccCceEEEeccccChh--chhhccCCC---CCCCCCCcEEEEecCChHHHhhcc----------Cccceeecc
Q 048789 253 I-----LSKKKFVLLLDDIWELV--DLAQVGLPV---SSCASSSNKIVFTTREIEVCGQME----------AHRSFKVEC 312 (724)
Q Consensus 253 ~-----l~~k~~LlVlDdv~~~~--~~~~l~~~~---~~~~~g~s~iliTtr~~~v~~~~~----------~~~~~~l~~ 312 (724)
. ..++++++|+||++... .++.+.... ...... ..|++|.... ....+. ....+.+.+
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~-~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKL-LQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCe-EEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCC
Confidence 2 26788999999998742 344332211 111112 3455555433 221111 123578999
Q ss_pred CChHHHHHHHHHHhCCCCCCCC-CChHHHHHHHHHHhCCCCchHHHHHHHHhc------C--CChhHHHHHHHHH
Q 048789 313 LGFDDAWKLFEEKVGRDTLDTH-PDIPELAEAVARECGGLPLALITVGRAMAS------R--KTPREWEHAIEVL 378 (724)
Q Consensus 313 L~~~~~~~lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~g~Plai~~~~~~l~~------~--~~~~~w~~~~~~l 378 (724)
++.++...++...+........ .-..+..+.|++.++|.|..+..++..+-. . -+.+.++.++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999887754321111 123567899999999999999988876511 1 3556666665544
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=2.4e-11 Score=138.99 Aligned_cols=271 Identities=22% Similarity=0.193 Sum_probs=158.3
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCC-ccccchHHhccccCcE
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSR-IERLPIEFKYLVNLKC 464 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~-i~~Lp~~i~~L~~L~~ 464 (724)
+..++.||+|++++|.-....|..++++-+||||+++++. .+|..+++|..|.|||+..+. +..+|..+..|.+|++
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 4568999999999987445567779999999999999999 899999999999999999984 5566666777999999
Q ss_pred eecCCcccccccChhhhcCCCcCcEEeccccCCCcc---ccc-------------ccccCCcccchHHhhcCCCCCeEEE
Q 048789 465 LNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQ---ARD-------------SILFGDCRVLVEELLCLEHLSVFTI 528 (724)
Q Consensus 465 L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~---~~~-------------~~~~~~~~~~~~~L~~L~~L~~L~i 528 (724)
|.+.... .......++.+.+|++|....+..... .+. .............+..+.+|+.|.+
T Consensus 647 L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i 724 (889)
T KOG4658|consen 647 LRLPRSA--LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSI 724 (889)
T ss_pred EEeeccc--cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEE
Confidence 9997663 111111244445555554433321111 000 0001122334445666777777777
Q ss_pred EEcchhhhHH-Hhccc-ccc-ccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccc--cC
Q 048789 529 TLNNFHALQR-LLDSC-MLQ-YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRE--LS 603 (724)
Q Consensus 529 ~~~~~~~~~~-~~~~~-~l~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~--~~ 603 (724)
.......... ..... ... ..++..+.+..|.....+. .....++|+.|.+.++...+.++.....+..+.. ..
T Consensus 725 ~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~--~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~ 802 (889)
T KOG4658|consen 725 LDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT--WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILP 802 (889)
T ss_pred EcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc--hhhccCcccEEEEecccccccCCCHHHHhhhcccEEec
Confidence 6554432111 00000 000 0123333444444433333 2345689999999985443333333222211111 12
Q ss_pred CCCcceE-EEecCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccCCC----CCCCCccEEeecCC-C
Q 048789 604 APNLKRV-EIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKA----LPFPCLKEMSVDGC-P 677 (724)
Q Consensus 604 l~~L~~L-~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~----~~~p~L~~L~i~~C-~ 677 (724)
++++..+ .+. ..++||++..+.+.+ +.|..|.... ..+|.+.++.+.+| +
T Consensus 803 f~~~~~l~~~~-----------------------~l~~l~~i~~~~l~~-~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~ 858 (889)
T KOG4658|consen 803 FNKLEGLRMLC-----------------------SLGGLPQLYWLPLSF-LKLEELIVEECPKLGKLPLLSTLTIVGCEE 858 (889)
T ss_pred ccccccceeee-----------------------cCCCCceeEecccCc-cchhheehhcCcccccCccccccceecccc
Confidence 2333333 222 344455555555554 2355554433 55888999999997 9
Q ss_pred CCCCCCCCC
Q 048789 678 LLKKLPLDC 686 (724)
Q Consensus 678 ~L~~lp~~~ 686 (724)
.+..+|...
T Consensus 859 ~~~~~~~~~ 867 (889)
T KOG4658|consen 859 KLKEYPDGE 867 (889)
T ss_pred ceeecCCcc
Confidence 999999764
No 16
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.16 E-value=2.7e-09 Score=114.53 Aligned_cols=224 Identities=17% Similarity=0.133 Sum_probs=136.8
Q ss_pred CCCccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 152 LPATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
.|+.++||++++++|...+.+ .....+.|+|++|+|||++++.++++.. .....-..++++.....+...++..|
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 356799999999999988743 3456788999999999999999999872 22222346677777777888999999
Q ss_pred HHHcCCCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccChh------chhhccCCCCCCCCC-CcEEEEecCChHH
Q 048789 228 AKKMGLFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWELV------DLAQVGLPVSSCASS-SNKIVFTTREIEV 298 (724)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~g-~s~iliTtr~~~v 298 (724)
+.++..........+..+....+.+.+. ++..+||||+++... .+..+...... ..+ .-.+|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 9998753221233456677777777775 356899999997642 12222211111 122 0225555555443
Q ss_pred Hhhcc-------CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHH----hCCCCchHHHHHHHH--h--
Q 048789 299 CGQME-------AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARE----CGGLPLALITVGRAM--A-- 363 (724)
Q Consensus 299 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~----c~g~Plai~~~~~~l--~-- 363 (724)
..... ....+.+.+++.++..+++..++.... ....--.+..+.|++. .|..+.|+..+-.+. +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 22211 124578999999999999998763221 0000112233334433 455666666554321 1
Q ss_pred c---CCChhHHHHHHHHH
Q 048789 364 S---RKTPREWEHAIEVL 378 (724)
Q Consensus 364 ~---~~~~~~w~~~~~~l 378 (724)
. .-+.++.+.+.+..
T Consensus 265 ~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred cCCCCcCHHHHHHHHHHH
Confidence 1 13556666666554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=9.5e-11 Score=132.01 Aligned_cols=178 Identities=19% Similarity=0.296 Sum_probs=115.6
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 469 (724)
+.|+.|++++|.+..++...+ .+|++|++++|. .+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 578899999998887766543 478999999888 7777654 478999999999989988765 5799999987
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVS 549 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 549 (724)
| .+..+|.. +. .+|++|++++|.. ..+|.. + ..+|+.|.++.+.+..++.... .+
T Consensus 272 N-~L~~LP~~-l~--~sL~~L~Ls~N~L-t~LP~~------------l--p~sL~~L~Ls~N~Lt~LP~~l~------~s 326 (754)
T PRK15370 272 N-KISCLPEN-LP--EELRYLSVYDNSI-RTLPAH------------L--PSGITHLNVQSNSLTALPETLP------PG 326 (754)
T ss_pred C-ccCccccc-cC--CCCcEEECCCCcc-ccCccc------------c--hhhHHHHHhcCCccccCCcccc------cc
Confidence 7 46778875 32 5899999987743 222211 1 1234455555555544332111 15
Q ss_pred cCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 550 TPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 550 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
|+.|.+.++. +..++. .+ +++|+.|++++|.++.+ |..+ .++|+.|+|++|.
T Consensus 327 L~~L~Ls~N~-Lt~LP~-~l--~~sL~~L~Ls~N~L~~L-P~~l----------p~~L~~LdLs~N~ 378 (754)
T PRK15370 327 LKTLEAGENA-LTSLPA-SL--PPELQVLDVSKNQITVL-PETL----------PPTITTLDVSRNA 378 (754)
T ss_pred ceeccccCCc-cccCCh-hh--cCcccEEECCCCCCCcC-Chhh----------cCCcCEEECCCCc
Confidence 6666666643 222221 11 35788888888777653 3332 3577788887764
No 18
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=6.1e-10 Score=110.33 Aligned_cols=195 Identities=17% Similarity=0.206 Sum_probs=102.8
Q ss_pred cccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH--------
Q 048789 156 VVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI-------- 227 (724)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i-------- 227 (724)
|+||+++++.|.+++..+..+.+.|+|+.|+|||+|++.+.+.. .. ..+ ..+|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~~-~~~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-KE-KGY-KVVYIDFLEESNE-SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHH-HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-hh-cCC-cEEEEecccchhh-hHHHHHHHHHHHHH
Confidence 68999999999999988878899999999999999999999987 21 111 3344443333322 222222
Q ss_pred ------HHHcCCCcc-c---cCCcCHHHHHHHHHHHHc--cCceEEEeccccChh-ch-------hhccCCCCC--CCCC
Q 048789 228 ------AKKMGLFNE-S---WQSKGLEEKANKIFKILS--KKKFVLLLDDIWELV-DL-------AQVGLPVSS--CASS 285 (724)
Q Consensus 228 ------~~~l~~~~~-~---~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~-------~~l~~~~~~--~~~g 285 (724)
...+..... . ............+.+.+. ++++++|+||+.... .. ..+...+.. ....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111111100 0 011122233334444443 456999999997654 11 111111111 1222
Q ss_pred CcEEEEecCChHHHhh--------ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 286 SNKIVFTTREIEVCGQ--------MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 286 ~s~iliTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
-.+++++....+... .+....+.+++++.+++++++...+... ... +.-....++|...+||+|..+..
T Consensus 157 -~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 -VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred -ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 345555555544332 1223358999999999999999876543 111 12244568999999999987754
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.07 E-value=1.9e-10 Score=129.70 Aligned_cols=226 Identities=15% Similarity=0.192 Sum_probs=151.3
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 469 (724)
.+...|.+.++.++.++... .++|+.|++++|. .+|..+. .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 35678999988887766543 3579999999999 8888765 599999999999999998764 4799999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVS 549 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 549 (724)
|. +..+|.. +. .+|+.|++++|. +..+|.. + ..+|+.|+++.+.+..++.... ..
T Consensus 251 N~-L~~LP~~-l~--s~L~~L~Ls~N~-L~~LP~~------------l--~~sL~~L~Ls~N~Lt~LP~~lp------~s 305 (754)
T PRK15370 251 NR-ITELPER-LP--SALQSLDLFHNK-ISCLPEN------------L--PEELRYLSVYDNSIRTLPAHLP------SG 305 (754)
T ss_pred Cc-cCcCChh-Hh--CCCCEEECcCCc-cCccccc------------c--CCCCcEEECCCCccccCcccch------hh
Confidence 95 7789976 43 589999998664 3333221 1 1478888988887776543211 15
Q ss_pred cCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCC
Q 048789 550 TPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSE 629 (724)
Q Consensus 550 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 629 (724)
|..|.++++. +..++. ..+++|+.|++++|.++.+ |..+ .++|+.|++++|. +..+..
T Consensus 306 L~~L~Ls~N~-Lt~LP~---~l~~sL~~L~Ls~N~Lt~L-P~~l----------~~sL~~L~Ls~N~-L~~LP~------ 363 (754)
T PRK15370 306 ITHLNVQSNS-LTALPE---TLPPGLKTLEAGENALTSL-PASL----------PPELQVLDVSKNQ-ITVLPE------ 363 (754)
T ss_pred HHHHHhcCCc-cccCCc---cccccceeccccCCccccC-Chhh----------cCcccEEECCCCC-CCcCCh------
Confidence 6667776643 332221 1246899999999988864 4332 3689999999874 332211
Q ss_pred cccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCC
Q 048789 630 VPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPL 684 (724)
Q Consensus 630 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 684 (724)
...++|++|+|+++ +|+.+|... .++|+.|.+++| +|..+|.
T Consensus 364 ---------~lp~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~ 405 (754)
T PRK15370 364 ---------TLPPTITTLDVSRN-ALTNLPENL--PAALQIMQASRN-NLVRLPE 405 (754)
T ss_pred ---------hhcCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhccC-CcccCch
Confidence 11357777777774 455554321 234666666653 4555553
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.07 E-value=3.4e-10 Score=126.83 Aligned_cols=228 Identities=17% Similarity=0.160 Sum_probs=120.7
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 469 (724)
++|+.|++.+|.++.++. .+++|++|++++|. .+|.. .++|++|++++|.+..+|... .+|+.|++++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcC
Confidence 467778888777766543 24677888888777 66642 356777777777777766532 4566777777
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCccccc---ccccC-CcccchHHhhcC-CCCCeEEEEEcchhhhHHHhcccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARD---SILFG-DCRVLVEELLCL-EHLSVFTITLNNFHALQRLLDSCM 544 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~---~~~~~-~~~~~~~~L~~L-~~L~~L~i~~~~~~~~~~~~~~~~ 544 (724)
| .+..+|.. +++|++|++++|... .+|. .+..- -....+..+..+ .+|+.|+++.+.+..++....
T Consensus 292 N-~Lt~LP~~----p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~--- 362 (788)
T PRK15387 292 N-QLTSLPVL----PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPS--- 362 (788)
T ss_pred C-cccccccc----ccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCc---
Confidence 7 35666642 356777777765322 2211 00000 000000011111 245555555555544432210
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhcc
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISS 624 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~ 624 (724)
+|..|.+.++ .+..++ . .+++|+.|++++|.++.+ |. ..++|+.|+++++. +..+
T Consensus 363 ----~L~~L~Ls~N-~L~~LP--~--l~~~L~~LdLs~N~Lt~L-P~-----------l~s~L~~LdLS~N~-LssI--- 417 (788)
T PRK15387 363 ----ELYKLWAYNN-RLTSLP--A--LPSGLKELIVSGNRLTSL-PV-----------LPSELKELMVSGNR-LTSL--- 417 (788)
T ss_pred ----ccceehhhcc-ccccCc--c--cccccceEEecCCcccCC-CC-----------cccCCCEEEccCCc-CCCC---
Confidence 3444444332 122211 1 124566677766666542 21 13467777777653 2222
Q ss_pred CCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCC
Q 048789 625 EKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCP 677 (724)
Q Consensus 625 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~ 677 (724)
| ..+.+|+.|++++ .+++.+|.....+++|+.|.+++++
T Consensus 418 ------P-------~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 418 ------P-------MLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ------C-------cchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 1 0134677777766 4566666655667777777777664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.06 E-value=5.8e-12 Score=109.65 Aligned_cols=101 Identities=27% Similarity=0.409 Sum_probs=47.6
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCcc--ccchHHhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIE--RLPIEFKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~--~Lp~~i~~L~~L~~L~ 466 (724)
+.+|++|.+++|++...+.. ++++++||.|++.-++ .+|..++.++.|..|||.+|++. .||..+-.+..|+-|+
T Consensus 55 l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 34444555555544433322 4445555555544444 44445555555555555544433 4444444444455555
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYE 494 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~ 494 (724)
++.|. .+-+|++ ++++++||.|.+..
T Consensus 134 l~dnd-fe~lp~d-vg~lt~lqil~lrd 159 (264)
T KOG0617|consen 134 LGDND-FEILPPD-VGKLTNLQILSLRD 159 (264)
T ss_pred hcCCC-cccCChh-hhhhcceeEEeecc
Confidence 54442 3444444 45555555554443
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=3.9e-11 Score=130.40 Aligned_cols=103 Identities=26% Similarity=0.388 Sum_probs=85.6
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
-++|+.|+...|.+....+. ..-.+|.+++++++. .+|+.++.+.+|..+++.+|.+.++|..+...++|+.|.+.
T Consensus 218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred CcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 36777888888876533222 223578999999999 89999999999999999999999999999999999999999
Q ss_pred CcccccccChhhhcCCCcCcEEeccccCC
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYECAT 497 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~~~ 497 (724)
+| .+..+|+. ..++++|++|++..|..
T Consensus 296 ~n-el~yip~~-le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 296 YN-ELEYIPPF-LEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred hh-hhhhCCCc-ccccceeeeeeehhccc
Confidence 98 57889986 78899999999997753
No 23
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.97 E-value=4e-08 Score=104.31 Aligned_cols=201 Identities=14% Similarity=0.177 Sum_probs=124.9
Q ss_pred CCccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC---cEEEEEEeCCcCCHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF---DFVIWIVVSKDLQLAKIQE 225 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~~~~~~~~~ 225 (724)
|+.++||++++++|..+|.+ .....+.|+|++|+|||++++.++++........ -..+|++.....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45789999999999998864 3456899999999999999999998762111111 2456777777777888999
Q ss_pred HHHHHcC---CCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccChh-c----hhhccCCC-CCCC--CCCcEEEEe
Q 048789 226 GIAKKMG---LFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWELV-D----LAQVGLPV-SSCA--SSSNKIVFT 292 (724)
Q Consensus 226 ~i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~l~~~~-~~~~--~g~s~iliT 292 (724)
.|+.++. .... ....+..+....+.+.+. ++++++|||+++... . +..+.... .... .. ..+|.+
T Consensus 94 ~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~-v~lI~i 171 (365)
T TIGR02928 94 ELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK-VGVIGI 171 (365)
T ss_pred HHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe-EEEEEE
Confidence 9999984 2211 122345556666666663 567899999997652 1 11221110 0111 12 344555
Q ss_pred cCChHHHhhcc-------CccceeeccCChHHHHHHHHHHhCCC--CCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 293 TREIEVCGQME-------AHRSFKVECLGFDDAWKLFEEKVGRD--TLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 293 tr~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
++.......+. ....+.+.+.+.++..+++..++... .....++..+....++..+.|.|..+
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 54433211111 12457899999999999999887421 11122333344555667777888544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=6.8e-11 Score=116.59 Aligned_cols=104 Identities=26% Similarity=0.302 Sum_probs=92.5
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCC-CCccccchH-HhccccCcEee
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSH-SRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~-~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
+.-..+.|..|.|+.+++..|+.+++||.|||++|. --|+.+..|..|-.|-+.+ |+|+.+|.. ++.|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 345678999999999999999999999999999999 6788999999998888877 799999986 78999999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccC
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
+.-| .+..++.+.+..|++|..|.++.|.
T Consensus 147 lNan-~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 147 LNAN-HINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred cChh-hhcchhHHHHHHhhhcchhcccchh
Confidence 9887 5788888889999999999988764
No 25
>PF05729 NACHT: NACHT domain
Probab=98.91 E-value=8.8e-09 Score=95.93 Aligned_cols=141 Identities=16% Similarity=0.263 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCC----CcEEEEEEeCCcCCHH---HHHHHHHHHcCCCccccCCcCHHHHHH
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNS----FDFVIWIVVSKDLQLA---KIQEGIAKKMGLFNESWQSKGLEEKAN 248 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 248 (724)
+++.|+|.+|+||||+++.++.+.. .... +...+|+..+...... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5789999999999999999998883 2222 4567777765544332 34444444433211 11111
Q ss_pred HHHHH-HccCceEEEeccccChhc---------hhh-ccCCCCC-CCCCCcEEEEecCChHH---HhhccCccceeeccC
Q 048789 249 KIFKI-LSKKKFVLLLDDIWELVD---------LAQ-VGLPVSS-CASSSNKIVFTTREIEV---CGQMEAHRSFKVECL 313 (724)
Q Consensus 249 ~l~~~-l~~k~~LlVlDdv~~~~~---------~~~-l~~~~~~-~~~g~s~iliTtr~~~v---~~~~~~~~~~~l~~L 313 (724)
.+... ...+++++|+|++++... +.. +...++. ...+ .+++||+|.... .........+.+.++
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPG-VKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCC-CeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 22222 256899999999976422 111 1111222 2345 899999999776 333444567899999
Q ss_pred ChHHHHHHHHHHh
Q 048789 314 GFDDAWKLFEEKV 326 (724)
Q Consensus 314 ~~~~~~~lf~~~~ 326 (724)
++++..+++.+++
T Consensus 151 ~~~~~~~~~~~~f 163 (166)
T PF05729_consen 151 SEEDIKQYLRKYF 163 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.90 E-value=1.3e-10 Score=126.52 Aligned_cols=101 Identities=29% Similarity=0.380 Sum_probs=64.6
Q ss_pred ceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcc
Q 048789 394 LRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTY 471 (724)
Q Consensus 394 Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~ 471 (724)
+..|.+..|.+...|-++..+.-+|+.||++++. ..|..|..+.+|+.|+++.|.|...|.++.++.+|++|.|.+|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n- 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN- 101 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-
Confidence 4455555555444444555555556677776666 6666666667777777777666666666666677777766655
Q ss_pred cccccChhhhcCCCcCcEEeccccC
Q 048789 472 GVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 472 ~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
.+..+|.+ +..+++|+.|+++.|.
T Consensus 102 ~l~~lP~~-~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 102 RLQSLPAS-ISELKNLQYLDLSFNH 125 (1081)
T ss_pred hhhcCchh-HHhhhcccccccchhc
Confidence 45666666 6666777777666554
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.89 E-value=5.8e-09 Score=117.04 Aligned_cols=228 Identities=18% Similarity=0.156 Sum_probs=141.8
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 469 (724)
..-..|+++++.++.+|+.+. ++|+.|++.+|. .+|. .+++|++|++++|.++.+|.. ..+|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 345678999999887766533 478999999988 7775 358999999999999999854 46889999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVS 549 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 549 (724)
|. +..+|.. ..+|+.|++.+|... .+|. .+++|+.|+++.+.+..++.+.. .
T Consensus 272 N~-L~~Lp~l----p~~L~~L~Ls~N~Lt-~LP~---------------~p~~L~~LdLS~N~L~~Lp~lp~-------~ 323 (788)
T PRK15387 272 NP-LTHLPAL----PSGLCKLWIFGNQLT-SLPV---------------LPPGLQELSVSDNQLASLPALPS-------E 323 (788)
T ss_pred Cc-hhhhhhc----hhhcCEEECcCCccc-cccc---------------cccccceeECCCCccccCCCCcc-------c
Confidence 84 6777752 367889999877432 2111 13568888888777766543211 4
Q ss_pred cCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCcccccc-------c--cCCCCcceEEEecCcchhh
Q 048789 550 TPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVR-------E--LSAPNLKRVEIENCQDMEE 620 (724)
Q Consensus 550 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~-------~--~~l~~L~~L~l~~c~~l~~ 620 (724)
|..|.+.++. +..++ . .+++|+.|++++|.++.+ |....++..|. . ..+++|+.|+++++. +..
T Consensus 324 L~~L~Ls~N~-L~~LP--~--lp~~Lq~LdLS~N~Ls~L-P~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~-Lt~ 396 (788)
T PRK15387 324 LCKLWAYNNQ-LTSLP--T--LPSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTS 396 (788)
T ss_pred ccccccccCc-ccccc--c--cccccceEecCCCccCCC-CCCCcccceehhhccccccCcccccccceEEecCCc-ccC
Confidence 5666666532 22222 1 124788888888887764 32222221110 0 012356666665542 221
Q ss_pred hhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCC
Q 048789 621 IISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPL 684 (724)
Q Consensus 621 l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 684 (724)
+ | ..+++|+.|++++. .|+.+|.. +.+|+.|.++++ +++.+|.
T Consensus 397 L---------P-------~l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~ 439 (788)
T PRK15387 397 L---------P-------VLPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPE 439 (788)
T ss_pred C---------C-------CcccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccCh
Confidence 1 1 12357888888873 56666532 345666666653 4556664
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.80 E-value=1.3e-09 Score=113.56 Aligned_cols=134 Identities=22% Similarity=0.198 Sum_probs=72.1
Q ss_pred CcceEEEeeccccccc----ChhhhhcCCCceEEEccCCC-C--------CchhhhccccCCeeecCCCCcc-ccchHHh
Q 048789 392 PRLRTLFLSSNIFHRV----NSDFFQSMASLRVLKLSYSN-P--------LLFEISKVVSLQHLDLSHSRIE-RLPIEFK 457 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~----~~~~~~~l~~Lr~L~l~~~~-~--------lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~ 457 (724)
..|+.|.+.+|.+... .+..+...+.|+.|+++++. . ++..+..+++|++|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3467777777764321 22334555667777776654 1 2334556667777777777655 3444454
Q ss_pred cccc---CcEeecCCccccc----ccChhhhcCC-CcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEE
Q 048789 458 YLVN---LKCLNLEYTYGVL----KIPPKVISNL-KILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTIT 529 (724)
Q Consensus 458 ~L~~---L~~L~l~~~~~~~----~lp~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~ 529 (724)
.+.+ |++|++++|.... .+... +..+ ++|+.|++.+|..... ........+..+.+|+.|++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~--------~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA--------SCEALAKALRANRDLKELNLA 173 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch--------HHHHHHHHHHhCCCcCEEECc
Confidence 4444 7777777664221 11112 4455 6777777776653211 011223345555666666666
Q ss_pred Ecchh
Q 048789 530 LNNFH 534 (724)
Q Consensus 530 ~~~~~ 534 (724)
.+.+.
T Consensus 174 ~n~l~ 178 (319)
T cd00116 174 NNGIG 178 (319)
T ss_pred CCCCc
Confidence 55543
No 29
>PRK06893 DNA replication initiation factor; Validated
Probab=98.78 E-value=4.7e-08 Score=95.59 Aligned_cols=151 Identities=13% Similarity=0.191 Sum_probs=94.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
..+.+.++|++|+|||+|++.+++... .....+.|+++... ..... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhH-----------------------HHHhh
Confidence 446789999999999999999999872 12234566665311 00000 11111
Q ss_pred HccCceEEEeccccCh---hchhh-ccCCCCCC-CCCCcEEE-EecCC---------hHHHhhccCccceeeccCChHHH
Q 048789 254 LSKKKFVLLLDDIWEL---VDLAQ-VGLPVSSC-ASSSNKIV-FTTRE---------IEVCGQMEAHRSFKVECLGFDDA 318 (724)
Q Consensus 254 l~~k~~LlVlDdv~~~---~~~~~-l~~~~~~~-~~g~s~il-iTtr~---------~~v~~~~~~~~~~~l~~L~~~~~ 318 (724)
+. +.-+||+||+|.. ..|+. +...+... ..| ..++ +|++. ..+...+.....++++++++++.
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~-~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQG-KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 11 2348999999863 33442 22222211 124 5554 45544 35566666677899999999999
Q ss_pred HHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 319 WKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 319 ~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
++++.+.+.......+ +++..-|++.+.|..-.+..+
T Consensus 167 ~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 167 IIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 9999998875442332 566788899998877665543
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.76 E-value=9.9e-08 Score=98.44 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=112.5
Q ss_pred CccccchhhHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME-----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
.+|+|++..++.+..++.. .....+.++|++|+|||+||+.+++.. . ..+. .+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~~---~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNLK---ITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCEE---EeccchhcCchhH-HHHH
Confidence 3689999999999888863 345678899999999999999999987 2 2221 1221111112222 2223
Q ss_pred HHcCCCc----cccCCcCHHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhhcc-
Q 048789 229 KKMGLFN----ESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQME- 303 (724)
Q Consensus 229 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~~~- 303 (724)
..++... ++.+..+ ....+.+...+.+.+..+|+++..+...+.. ..+ +. +-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~-~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PF-TLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---Ce-EEEEecCCccccCHHHHh
Confidence 3332211 0000011 1233445666666666677776654443322 222 13 56667777654432211
Q ss_pred -CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHH
Q 048789 304 -AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGR 360 (724)
Q Consensus 304 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 360 (724)
....+.+++++.++..+++.+.+....... -.+....|++.|+|.|..+..+..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHH
Confidence 134678999999999999998876433222 245678899999999976654443
No 31
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=1.8e-07 Score=112.05 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=122.7
Q ss_pred CCCccccchhhHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeC-CcCCHHHHHHHHHH
Q 048789 152 LPATVVGLQSTFDGVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVS-KDLQLAKIQEGIAK 229 (724)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~ 229 (724)
.+..++-|+.-.+.+ .. ...+++.|.|++|.||||++..+.... . .++|+++. ...++..+...++.
T Consensus 12 ~~~~~~~R~rl~~~l----~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 12 RLHNTVVRERLLAKL----SGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CccccCcchHHHHHH----hcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHH
Confidence 345667776444443 33 467899999999999999999988543 2 58999986 44567777777777
Q ss_pred HcCCCccc-----------cCCcCHHHHHHHHHHHHc--cCceEEEeccccChh--chh-hccCCCCCCCCCCcEEEEec
Q 048789 230 KMGLFNES-----------WQSKGLEEKANKIFKILS--KKKFVLLLDDIWELV--DLA-QVGLPVSSCASSSNKIVFTT 293 (724)
Q Consensus 230 ~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~-~l~~~~~~~~~g~s~iliTt 293 (724)
.++..... ....+.......+...+. +.+++|||||+.... ... .+...+.....+ .++||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~-~~lv~~s 159 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPEN-LTLVVLS 159 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCC-eEEEEEe
Confidence 77421110 011222333444444443 678999999996532 112 222222222233 7888999
Q ss_pred CChHHHh--hcc-Cccceeec----cCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhc
Q 048789 294 REIEVCG--QME-AHRSFKVE----CLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMAS 364 (724)
Q Consensus 294 r~~~v~~--~~~-~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~ 364 (724)
|...-.. .+. ......+. +|+.+|+..+|....+... -.+....|.+.|+|.|+++..++..+..
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9842111 111 12234454 8999999999987665332 1345678999999999999988877654
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.70 E-value=4.2e-07 Score=94.41 Aligned_cols=189 Identities=16% Similarity=0.129 Sum_probs=109.9
Q ss_pred CccccchhhHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME-----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
.+|+|++..++.+..++.. .....+.|+|++|+||||+|+.+++.. . ..+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecc-cccChHHHHHHH
Confidence 4689999999998877752 345688999999999999999999987 2 222 112211 111112233333
Q ss_pred HHcCCCc----cccCCcCHHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhhcc-
Q 048789 229 KKMGLFN----ESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQME- 303 (724)
Q Consensus 229 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~~~- 303 (724)
..+.... ++..... ....+.+...+.+.+..+|+|+..+...+. ..++ .. +-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~---~~-~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP---PF-TLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC---Cc-eEEeecCCcccCCHHHHH
Confidence 3332211 0000000 112233445555556666666654332211 1112 12 55666777544422211
Q ss_pred -CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHH
Q 048789 304 -AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGR 360 (724)
Q Consensus 304 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 360 (724)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..+..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHH
Confidence 1346789999999999999998875442222 45688999999999965554443
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=2.6e-08 Score=103.83 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=9.0
Q ss_pred cccceEEeecCCcc
Q 048789 573 RHLQTLHLTYNDLE 586 (724)
Q Consensus 573 ~~L~~L~l~~~~l~ 586 (724)
+.|++|++++|.++
T Consensus 250 ~~L~~L~l~~n~i~ 263 (319)
T cd00116 250 ISLLTLSLSCNDIT 263 (319)
T ss_pred CCceEEEccCCCCC
Confidence 56777777766554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=2.2e-08 Score=91.89 Aligned_cols=130 Identities=24% Similarity=0.257 Sum_probs=52.7
Q ss_pred CCCCCcceEEEeecccccccChhhhh-cCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchHH-hccccCcE
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQ-SMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEF-KYLVNLKC 464 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~ 464 (724)
..++.+++.|++.+|.+..+.. +. .+.+|+.|++++|. .-.+.+..|++|++|++++|.|+.++..+ ..+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3455678999999998766532 44 57899999999999 43446888999999999999999997666 46899999
Q ss_pred eecCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEE
Q 048789 465 LNLEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTIT 529 (724)
Q Consensus 465 L~l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~ 529 (724)
|++++|. +..+.. ..+..+++|++|++.+|+.... ..+...-+..+++|+.|+-.
T Consensus 93 L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~---------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK---------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS---------TTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch---------hhHHHHHHHHcChhheeCCE
Confidence 9999884 444432 2377899999999998874321 33445556677888877643
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.2e-08 Score=102.35 Aligned_cols=186 Identities=19% Similarity=0.192 Sum_probs=113.6
Q ss_pred CCCCcceEEEeecccccccCh-hhhhcCCCceEEEccCCC-----CCchhhhccccCCeeecCCCCccccchH--Hhccc
Q 048789 389 PVCPRLRTLFLSSNIFHRVNS-DFFQSMASLRVLKLSYSN-----PLLFEISKVVSLQHLDLSHSRIERLPIE--FKYLV 460 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~-----~lp~~i~~L~~L~~L~L~~~~i~~Lp~~--i~~L~ 460 (724)
.++++||...|.++.+..... .....|+++|.|||+++- .+..-+..|++|+.|+|+.|.+....++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456788889998887544432 457789999999999887 3444567799999999999877643332 23677
Q ss_pred cCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHh
Q 048789 461 NLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLL 540 (724)
Q Consensus 461 ~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~ 540 (724)
+|+.|.|++|.....--......+++|+.|++.+|..... ... .-.-+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----------~~~--~~~i~~------------------- 246 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----------KAT--STKILQ------------------- 246 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----------ecc--hhhhhh-------------------
Confidence 8899999988533221112245678888888887642110 000 000111
Q ss_pred ccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccc-cCCCCcceEEEecCc
Q 048789 541 DSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRE-LSAPNLKRVEIENCQ 616 (724)
Q Consensus 541 ~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~-~~l~~L~~L~l~~c~ 616 (724)
.|+.|+|++.+.++.-.......++.|..|+++.+++.++......+ +.. ..+|+|++|.+...+
T Consensus 247 --------~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s---~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 247 --------TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES---LDKTHTFPKLEYLNISENN 312 (505)
T ss_pred --------HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc---hhhhcccccceeeecccCc
Confidence 34555555544433333334567788888888887776552222211 111 247888888877654
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.57 E-value=4.6e-08 Score=97.00 Aligned_cols=211 Identities=21% Similarity=0.195 Sum_probs=145.5
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccC-CC--CCch-hhhccccCCeeecCCCCccccc-hHHhccccC
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSY-SN--PLLF-EISKVVSLQHLDLSHSRIERLP-IEFKYLVNL 462 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L 462 (724)
+..+++||.|+|+.|.|+.+.|+.|..++.|-.|-+.+ ++ .+|+ .+++|..|+-|.+.-|.+.-++ ..+..|++|
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence 46789999999999999999999999999988877777 44 7776 4677888888888877777443 457788888
Q ss_pred cEeecCCcccccccChhhhcCCCcCcEEeccccCCCcc-----------------------ccc----------------
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQ-----------------------ARD---------------- 503 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~-----------------------~~~---------------- 503 (724)
..|.+..| .+..++.+.+..+.+++++++..+..... .|.
T Consensus 167 ~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~ 245 (498)
T KOG4237|consen 167 SLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL 245 (498)
T ss_pred chhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh
Confidence 88888777 46777775577777777777665542110 000
Q ss_pred --------ccc---cCCcccchHHhhcCCCCCeEEEEEcchhhhHHH-hccccccccccCcEEeeccCCCCccccccccc
Q 048789 504 --------SIL---FGDCRVLVEELLCLEHLSVFTITLNNFHALQRL-LDSCMLQYVSTPSLCLSHFNNSKSLGVFSLAS 571 (724)
Q Consensus 504 --------~~~---~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~-~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~ 571 (724)
... ......-..-++.|++|+++.++.+.++.+... +.... .++.|.|.. +.+..+....|..
T Consensus 246 c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a----~l~eL~L~~-N~l~~v~~~~f~~ 320 (498)
T KOG4237|consen 246 CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA----ELQELYLTR-NKLEFVSSGMFQG 320 (498)
T ss_pred hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh----hhhhhhcCc-chHHHHHHHhhhc
Confidence 000 001112234478899999999999998876632 22211 455555544 3344444456788
Q ss_pred ccccceEEeecCCcceEEEccCCccccccccCCCCcceEEE
Q 048789 572 LRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEI 612 (724)
Q Consensus 572 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l 612 (724)
+.+|+.|+|.+|.++.+.|..+.. +..|..|.+
T Consensus 321 ls~L~tL~L~~N~it~~~~~aF~~--------~~~l~~l~l 353 (498)
T KOG4237|consen 321 LSGLKTLSLYDNQITTVAPGAFQT--------LFSLSTLNL 353 (498)
T ss_pred cccceeeeecCCeeEEEecccccc--------cceeeeeeh
Confidence 999999999999999887777653 445555555
No 37
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.56 E-value=5.3e-07 Score=88.62 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=100.7
Q ss_pred chhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc
Q 048789 159 LQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW 238 (724)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 238 (724)
.+..++.+.+++.......|.|+|.+|+|||++|+.+++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 344666777776566678999999999999999999998872 2233455555432211 00
Q ss_pred CCcCHHHHHHHHHHHHccCceEEEeccccChh---ch-hhccCCCCC-CCCCCcEEEEecCChH---------HHhhccC
Q 048789 239 QSKGLEEKANKIFKILSKKKFVLLLDDIWELV---DL-AQVGLPVSS-CASSSNKIVFTTREIE---------VCGQMEA 304 (724)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~g~s~iliTtr~~~---------v~~~~~~ 304 (724)
..+.+.+.+ .-+||+||++... .| +.+...+.. ...+ .++|+|++... +...+..
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~-~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAG-GRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-CeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011111222 2389999997542 22 223222221 1233 57888887532 2223333
Q ss_pred ccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHH
Q 048789 305 HRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359 (724)
Q Consensus 305 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 359 (724)
...+++.++++++-..++...+.......+ .+..+.+++.+.|.|..+..+.
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 457899999999999998876532221222 4556778888999998766553
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.53 E-value=7.9e-07 Score=89.27 Aligned_cols=159 Identities=20% Similarity=0.237 Sum_probs=96.8
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHH
Q 048789 166 VWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEE 245 (724)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (724)
|-+.+..+.+...-.||++|+||||||+.+.... ...|... +...+ ..++..+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~-----sAv~~-------------------gvkdlr~ 91 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEAL-----SAVTS-------------------GVKDLRE 91 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEe-----ccccc-------------------cHHHHHH
Confidence 3345556788889999999999999999999876 4455432 21111 1112222
Q ss_pred HHHHHHH-HHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE--ecCChHH---HhhccCccceeeccCChHH
Q 048789 246 KANKIFK-ILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF--TTREIEV---CGQMEAHRSFKVECLGFDD 317 (724)
Q Consensus 246 ~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili--Ttr~~~v---~~~~~~~~~~~l~~L~~~~ 317 (724)
..+.-++ ...|++.+|++|+|..- .+-+.+ +|...+| .-|+| ||.+... ........++.+++|+.++
T Consensus 92 i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G-~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~d 167 (436)
T COG2256 92 IIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENG-TIILIGATTENPSFELNPALLSRARVFELKPLSSED 167 (436)
T ss_pred HHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCC-eEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHH
Confidence 2333322 23589999999999653 222233 4444566 77777 5555432 1222345689999999999
Q ss_pred HHHHHHHHhCCCCC--C-CCCCh-HHHHHHHHHHhCCCCchH
Q 048789 318 AWKLFEEKVGRDTL--D-THPDI-PELAEAVARECGGLPLAL 355 (724)
Q Consensus 318 ~~~lf~~~~~~~~~--~-~~~~~-~~~~~~i~~~c~g~Plai 355 (724)
-.+++.+.+..... . ....+ ++....++..+.|--.++
T Consensus 168 i~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 168 IKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 99999985432211 1 11112 345677888888865443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=4.3e-09 Score=108.84 Aligned_cols=168 Identities=27% Similarity=0.287 Sum_probs=95.3
Q ss_pred EEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccc
Q 048789 396 TLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGV 473 (724)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~ 473 (724)
..+++.|.+..++.. +..+..|..|.|..+. .+|.++++|..|.||+|+.|.+..||..++.|. |+.|-+++| .+
T Consensus 79 ~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KL 155 (722)
T ss_pred hhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-cc
Confidence 445555555444433 4555555555555554 666666666666666666666666666666554 666666555 35
Q ss_pred cccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcE
Q 048789 474 LKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSL 553 (724)
Q Consensus 474 ~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L 553 (724)
..+|.+ |+.+.+|.+|+.+.|. ....+.+++.|.+|+.|.+.-+++..++.-.. .+.|.+|
T Consensus 156 ~~lp~~-ig~~~tl~~ld~s~ne-------------i~slpsql~~l~slr~l~vrRn~l~~lp~El~-----~LpLi~l 216 (722)
T KOG0532|consen 156 TSLPEE-IGLLPTLAHLDVSKNE-------------IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-----SLPLIRL 216 (722)
T ss_pred ccCCcc-cccchhHHHhhhhhhh-------------hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-----CCceeee
Confidence 666665 6666666666666543 33344555555666655555555444432111 1145555
Q ss_pred EeeccCCCCcccccccccccccceEEeecCCcce
Q 048789 554 CLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEE 587 (724)
Q Consensus 554 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 587 (724)
++++ +.+..+++ .+..+++|++|-|.+|-+..
T Consensus 217 DfSc-Nkis~iPv-~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 217 DFSC-NKISYLPV-DFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eccc-Cceeecch-hhhhhhhheeeeeccCCCCC
Confidence 5543 33444443 46677788888888777764
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.50 E-value=1.5e-06 Score=93.21 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=103.8
Q ss_pred CccccchhhHHH---HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDG---VWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
++++|.+..+.. +.+++.......+.++|++|+||||+|+.+++.. ...| +.++....-.+-.+.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH--
Confidence 357888877555 7777777777889999999999999999999876 2333 22221111111111122
Q ss_pred cCCCccccCCcCHHHHHHHHHHH-HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE--ecCChH--HH-hhc
Q 048789 231 MGLFNESWQSKGLEEKANKIFKI-LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF--TTREIE--VC-GQM 302 (724)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili--Ttr~~~--v~-~~~ 302 (724)
+..... ..+++.++++|+++.. ...+.+...+. .+ ..+++ ||.+.. +. ...
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~-~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DG-TITLIGATTENPSFEVNPALL 140 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cC-cEEEEEeCCCChhhhccHHHh
Confidence 122111 1457889999999864 23333333322 23 44444 333322 11 111
Q ss_pred cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHH
Q 048789 303 EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359 (724)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 359 (724)
.....+.+.+++.++.+.++.+.+.........-..+....|++.|+|.+..+..+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 223578899999999999999866432100001224567788999999987665443
No 41
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.49 E-value=2.4e-06 Score=94.32 Aligned_cols=171 Identities=14% Similarity=0.124 Sum_probs=107.3
Q ss_pred CCccccchhhHHHHHHHhhc----C-CceEEEEEcCCCCcHHHHHHHHHHhccCC--CCCCc--EEEEEEeCCcCCHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME----E-QMGIVGLYGMGGVGKTTLLTQINNKFLDT--PNSFD--FVIWIVVSKDLQLAKI 223 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~~f~--~~~wv~v~~~~~~~~~ 223 (724)
|+.+.||++++++|...|.+ . ...++-|+|.+|+|||+.++.|.+..... ..... .+++|+.....++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 56789999999999988864 2 33577899999999999999998876211 12222 3566776666788889
Q ss_pred HHHHHHHcCCCccccCCcCHHHHHHHHHHHHc---cCceEEEeccccChhc-----hhhccCCCCCCCCCCcEEEE--ec
Q 048789 224 QEGIAKKMGLFNESWQSKGLEEKANKIFKILS---KKKFVLLLDDIWELVD-----LAQVGLPVSSCASSSNKIVF--TT 293 (724)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~g~s~ili--Tt 293 (724)
...|..++...... ......+..+.+...+. +...+||||+|+.... +-.+... +. ..+ ++|++ .+
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~-SKLiLIGIS 909 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KIN-SKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccC-CeEEEEEec
Confidence 99999988543321 23334455556665552 2345899999975321 1111111 11 123 45444 33
Q ss_pred CChH--------HHhhccCccceeeccCChHHHHHHHHHHhCC
Q 048789 294 REIE--------VCGQMEAHRSFKVECLGFDDAWKLFEEKVGR 328 (724)
Q Consensus 294 r~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (724)
...+ +...++ ...+...|.+.++-..++..++..
T Consensus 910 NdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred Cchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHh
Confidence 3222 122222 223667999999999999998864
No 42
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.49 E-value=1.6e-05 Score=88.89 Aligned_cols=202 Identities=15% Similarity=0.080 Sum_probs=117.6
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC---cEEEEEEeCCc---CCHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF---DFVIWIVVSKD---LQLAKIQEGI 227 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~---~~~~~~~~~i 227 (724)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 3579999999998888876667789999999999999999998876 222222 12334444321 1222221111
Q ss_pred ---------------HHHcCCCc----------------cccCCcCHHHHHHHHHHHHccCceEEEeccccCh--hchhh
Q 048789 228 ---------------AKKMGLFN----------------ESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL--VDLAQ 274 (724)
Q Consensus 228 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~ 274 (724)
+...+... ++.... ....+..+.+.+.++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111110 000111 123567788888888888887766643 34666
Q ss_pred ccCCCCCCCCCCcEEEE--ecCChHH-Hhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCC
Q 048789 275 VGLPVSSCASSSNKIVF--TTREIEV-CGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGG 350 (724)
Q Consensus 275 l~~~~~~~~~g~s~ili--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 350 (724)
+...+....+. ..+++ ||++... ...+ .....+.+.+++.++.+.++.+.+........ .+..+.|.+.+..
T Consensus 312 ik~~~~~~~~~-~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLFEEGAPA-DFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIE 387 (615)
T ss_pred hhhhcccCccc-eEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCc
Confidence 65555554444 44555 5554332 1111 12235778999999999999998754321111 3455566666554
Q ss_pred CCchHHHHHHH
Q 048789 351 LPLALITVGRA 361 (724)
Q Consensus 351 ~Plai~~~~~~ 361 (724)
-+.++..++.+
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 45666655544
No 43
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.46 E-value=3.4e-07 Score=89.60 Aligned_cols=93 Identities=20% Similarity=0.194 Sum_probs=63.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc--CCHHHHHHHHHH-----HcCCCccccCCcCHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD--LQLAKIQEGIAK-----KMGLFNESWQSKGLEE 245 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~-----~l~~~~~~~~~~~~~~ 245 (724)
..-..++|+|++|+|||||++.+++.. .. .+|+..+|+.+... .++.++++.+.. +++.+... ...-...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHH
Confidence 345689999999999999999999998 33 38999999997766 799999999933 33321100 0001111
Q ss_pred HHHHHHHH-HccCceEEEeccccC
Q 048789 246 KANKIFKI-LSKKKFVLLLDDIWE 268 (724)
Q Consensus 246 ~~~~l~~~-l~~k~~LlVlDdv~~ 268 (724)
........ -.+++.++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 22222222 257999999999964
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=1e-07 Score=87.53 Aligned_cols=110 Identities=25% Similarity=0.281 Sum_probs=41.9
Q ss_pred hhcCCCceEEEccCCC-CCchhhh-ccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccChhhhcCCCcCcE
Q 048789 412 FQSMASLRVLKLSYSN-PLLFEIS-KVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQT 489 (724)
Q Consensus 412 ~~~l~~Lr~L~l~~~~-~lp~~i~-~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~ 489 (724)
+.+...++.|+|+++. .-.+.++ .+.+|+.|++++|.|+.++ .+..|.+|++|++++| .+..++......+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCE
Confidence 4556678999999998 5455677 5889999999999999886 6888999999999999 578887653357999999
Q ss_pred EeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 490 LRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 490 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
|++.+|.... ...+..|..+++|+.|++..+.+.
T Consensus 93 L~L~~N~I~~-----------l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISD-----------LNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---S-----------CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCC-----------hHHhHHHHcCCCcceeeccCCccc
Confidence 9999775422 123456777888888887755543
No 45
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=6.1e-07 Score=79.08 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
.+++.|.|+.|+||||++++++.+. . ....+++++..+........ .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 3689999999999999999999887 1 34556666655442211000 00 223333333
Q ss_pred ccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhh------ccCccceeeccCChHH
Q 048789 255 SKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQ------MEAHRSFKVECLGFDD 317 (724)
Q Consensus 255 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~------~~~~~~~~l~~L~~~~ 317 (724)
..++.+++||++....+|......+.+.... .+|++|+.+...... .+....+++.||+..|
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~-~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPN-IKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccC-ceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 3477889999999888887765555554445 799999998766432 1123467889998766
No 46
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.40 E-value=2.6e-06 Score=77.28 Aligned_cols=123 Identities=21% Similarity=0.153 Sum_probs=72.7
Q ss_pred ccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcc
Q 048789 157 VGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNE 236 (724)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 236 (724)
+|++..+..+...+.....+.+.|+|.+|+|||++++.+++... ..-..++++..+...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888889998888776778999999999999999999999872 222345566554433222211111000
Q ss_pred ccCCcCHHHHHHHHHHHHccCceEEEeccccCh-----hchhhccCCCCCC---CCCCcEEEEecCChH
Q 048789 237 SWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL-----VDLAQVGLPVSSC---ASSSNKIVFTTREIE 297 (724)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~---~~g~s~iliTtr~~~ 297 (724)
............+..++|+||++.. ..+..+....... ..+ ..+++||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDREN-VRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCC-eEEEEecCccc
Confidence 0011111223456789999999852 2222222222111 234 78888887654
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=7.9e-07 Score=100.19 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=92.0
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCcc-ccchHHhccccCcEeecC
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~l~ 468 (724)
.++.|+|.+|.+....+..+..+++|+.|+|++|. .+|..++.+.+|++|+|++|.+. .+|..+++|.+|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999887778889999999999999998 78999999999999999999887 789999999999999999
Q ss_pred CcccccccChhhhcC-CCcCcEEeccccCCCcc
Q 048789 469 YTYGVLKIPPKVISN-LKILQTLRMYECATVPQ 500 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~-l~~L~~L~l~~~~~~~~ 500 (724)
+|.....+|.. ++. +.++..+++.+|..++.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccccC
Confidence 99766788887 554 45777888887765553
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.5e-05 Score=80.10 Aligned_cols=191 Identities=16% Similarity=0.222 Sum_probs=125.6
Q ss_pred CCccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
|+.+.+|+.+++++...|.+ ....-+.|+|..|+|||+.++.|...........+ .++|++-......+++..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 45589999999999988764 34445999999999999999999999843223333 78899888899999999999
Q ss_pred HHcCCCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccChhch-----hhccCCCCCCCCCCcEEE--EecCChHHH
Q 048789 229 KKMGLFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWELVDL-----AQVGLPVSSCASSSNKIV--FTTREIEVC 299 (724)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~-----~~l~~~~~~~~~g~s~il--iTtr~~~v~ 299 (724)
.+++... .......+..+.+.+.+. ++.+++|||++.....- -.+... +... . ++|. ..+.+....
T Consensus 95 ~~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~-~~~~-~-~~v~vi~i~n~~~~~ 169 (366)
T COG1474 95 NKLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA-PGEN-K-VKVSIIAVSNDDKFL 169 (366)
T ss_pred HHcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh-cccc-c-eeEEEEEEeccHHHH
Confidence 9997332 245566677777777774 58899999999754222 122111 1111 2 4433 344444332
Q ss_pred h--------hccCccceeeccCChHHHHHHHHHHhCCC--CCCCCCChHHHHHHHHHHhCC
Q 048789 300 G--------QMEAHRSFKVECLGFDDAWKLFEEKVGRD--TLDTHPDIPELAEAVARECGG 350 (724)
Q Consensus 300 ~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g 350 (724)
. .++.. .+...|-+.+|-..++..++... ......+..++...++..-+|
T Consensus 170 ~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 170 DYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 2 22222 37788999999999998887422 112334444445555555554
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.1e-05 Score=83.34 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=108.9
Q ss_pred ccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcc---CCCCCCcEEEEEEe-CCcCCHHHHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFL---DTPNSFDFVIWIVV-SKDLQLAKIQEGIAK 229 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~---~~~~~f~~~~wv~v-~~~~~~~~~~~~i~~ 229 (724)
+++|.+..++.+.+++..+.. +...++|+.|+||||+|+.++.... ....|.|...|... +.....++ .+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 578999999999999987654 5778999999999999999998652 12356676666542 22233333 222333
Q ss_pred HcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccc--cChhchhhccCCCCCCCCCCcEEEEecCChHHH-hh-ccCc
Q 048789 230 KMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDI--WELVDLAQVGLPVSSCASSSNKIVFTTREIEVC-GQ-MEAH 305 (724)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv--~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~-~~-~~~~ 305 (724)
.+.... ..+++-++|+|++ .+...++.+...+.....+ +.+|++|.+.+.. .. -...
T Consensus 84 ~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~-t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 84 EVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKG-VFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCC-eEEEEEeCChHhCcHHHHhhc
Confidence 222110 1234445566655 4455566665555544445 7888777655421 11 1224
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 306 RSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
..+.+.+++.++....+.+.+.... .+.+..++..++|.|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHH
Confidence 5788999999999887766543111 2336678899999886554
No 50
>PTZ00202 tuzin; Provisional
Probab=98.38 E-value=9.3e-06 Score=83.25 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=96.9
Q ss_pred CCCCccccchhhHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 151 PLPATVVGLQSTFDGVWKCLME---EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 151 ~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
+..+.|+||+.+...+...|.+ +..+++.|.|++|+|||||++.+.... . ....+++.. +..++++.+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~-----~~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G-----MPAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C-----ceEEEECCC---CHHHHHHHH
Confidence 3356899999999999998864 245699999999999999999999776 2 113333333 679999999
Q ss_pred HHHcCCCccccCCcCHHHHHHHHHHHH-----c-cCceEEEec--cccChh-chhhccCCCCCCCCCCcEEEEecCChHH
Q 048789 228 AKKMGLFNESWQSKGLEEKANKIFKIL-----S-KKKFVLLLD--DIWELV-DLAQVGLPVSSCASSSNKIVFTTREIEV 298 (724)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlD--dv~~~~-~~~~l~~~~~~~~~g~s~iliTtr~~~v 298 (724)
+.+||.+.. ....++.+.|++.+ . +++.+||+- +-.+.. .+.+... +.....- |.|++---.+..
T Consensus 330 L~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~-ch~v~evplesl 403 (550)
T PTZ00202 330 VKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRL-CHVVIEVPLESL 403 (550)
T ss_pred HHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchh-heeeeeehHhhc
Confidence 999997432 22234444444433 2 566666652 211111 1111110 1111112 666665444333
Q ss_pred Hh---hccCccceeeccCChHHHHHHHHHH
Q 048789 299 CG---QMEAHRSFKVECLGFDDAWKLFEEK 325 (724)
Q Consensus 299 ~~---~~~~~~~~~l~~L~~~~~~~lf~~~ 325 (724)
.- ....-..|.+.+++.++|..+-.+.
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 1122346788899999998876654
No 51
>PRK08727 hypothetical protein; Validated
Probab=98.38 E-value=5.8e-06 Score=81.08 Aligned_cols=167 Identities=11% Similarity=0.094 Sum_probs=96.2
Q ss_pred ccccch-hhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 155 TVVGLQ-STFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 155 ~~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
+|++.. .....+...........+.|+|..|+|||+|++.+++... .....+.+++..+ ....+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-----
Confidence 344433 3333333333333445799999999999999999998872 2223455665322 111111
Q ss_pred CccccCCcCHHHHHHHHHHHHccCceEEEeccccChh---chhh-ccCCCCCC-CCCCcEEEEecCCh---------HHH
Q 048789 234 FNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV---DLAQ-VGLPVSSC-ASSSNKIVFTTREI---------EVC 299 (724)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~-l~~~~~~~-~~g~s~iliTtr~~---------~v~ 299 (724)
+ ..+.+ .+.-+||+||+.... .|.. +...+... ..| ..||+|++.. ++.
T Consensus 86 -----------~----~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 -----------D----ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred -----------H----HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHH
Confidence 0 11111 133489999997432 2221 11111111 134 5799998853 223
Q ss_pred hhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 300 GQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 300 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
..+.....+++++++.++-..++.+++.......+ ++....|++.+.|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 34444568899999999999999987754332222 456778888888766554
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=2e-08 Score=104.08 Aligned_cols=150 Identities=24% Similarity=0.297 Sum_probs=109.5
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
..+..|..|+++.|+++..++. ++.|+ |++|-+++++ .+|+.|+.+.+|..|+.+.|.+..+|..++.|.+|+.|+
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 4566778888888887766655 55554 7888888888 889899988899999999999999999999999999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHh-ccccc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLL-DSCML 545 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~-~~~~l 545 (724)
++.| .+..+|++ +..| .|..|+++.|. ....+-.+.+++.|+.|-+..+.+.+-+.-. .....
T Consensus 196 vrRn-~l~~lp~E-l~~L-pLi~lDfScNk-------------is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 196 VRRN-HLEDLPEE-LCSL-PLIRLDFSCNK-------------ISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV 259 (722)
T ss_pred Hhhh-hhhhCCHH-HhCC-ceeeeecccCc-------------eeecchhhhhhhhheeeeeccCCCCCChHHHHhccce
Confidence 9888 47888887 5644 48888888443 3345556788889999988888776654322 11111
Q ss_pred cccccCcEEeecc
Q 048789 546 QYVSTPSLCLSHF 558 (724)
Q Consensus 546 ~~~~L~~L~l~~~ 558 (724)
. -.++|++..|
T Consensus 260 H--IFKyL~~qA~ 270 (722)
T KOG0532|consen 260 H--IFKYLSTQAC 270 (722)
T ss_pred e--eeeeecchhc
Confidence 1 2456666665
No 53
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=9.9e-07 Score=78.36 Aligned_cols=117 Identities=19% Similarity=0.258 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCC--CCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDT--PNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIF 251 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (724)
+.+.+.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++.... ...+..++.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHHH
Confidence 34689999999999999999999986210 0013466799988888999999999999987653 2356777888888
Q ss_pred HHHccCce-EEEeccccCh-h--chhhccCCCCCCCCCCcEEEEecCC
Q 048789 252 KILSKKKF-VLLLDDIWEL-V--DLAQVGLPVSSCASSSNKIVFTTRE 295 (724)
Q Consensus 252 ~~l~~k~~-LlVlDdv~~~-~--~~~~l~~~~~~~~~g~s~iliTtr~ 295 (724)
+.+...+. +||+||++.. . .++.+..... ..+ .++++..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~-~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESN-IKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCB-EEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCC-CeEEEEECh
Confidence 88876555 9999999654 1 2223322222 334 666666554
No 54
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.33 E-value=9.6e-06 Score=85.13 Aligned_cols=195 Identities=12% Similarity=0.129 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc-EEEEEEeCCcCCHHHHHHHHH----
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD-FVIWIVVSKDLQLAKIQEGIA---- 228 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~---- 228 (724)
++++|++..++.+.+++..+..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++...+ .....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 46899999999999998877767789999999999999999998872 12222 233444322110 0000000
Q ss_pred --HHcCCCccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccChh--chhhccCCCCCCCCCCcEEEEecCChH-H
Q 048789 229 --KKMGLFNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWELV--DLAQVGLPVSSCASSSNKIVFTTREIE-V 298 (724)
Q Consensus 229 --~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~g~s~iliTtr~~~-v 298 (724)
..++... .......+.....+.... .+.+-++|+||+.... ....+...+...... +++|+|+.... +
T Consensus 91 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~-~~~Il~~~~~~~~ 168 (337)
T PRK12402 91 FAHFLGTDK-RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRT-CRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhhh-hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCC-CeEEEEeCChhhC
Confidence 0000000 000001111111121211 1344589999996532 222232222222233 66777765432 2
Q ss_pred Hhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 299 CGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 299 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
...+ .....+.+.+++.++...++.+.+.......+ .+....+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2211 22346788999999998888887654332222 45677888888887665443
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.30 E-value=4.4e-06 Score=78.39 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=91.9
Q ss_pred CccccchhhHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLM-----EEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
++|||.+.-++.+.-++. .+....+.+||++|+||||||..+++.. ...|. +++.+.-..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k--------- 88 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEK--------- 88 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--S---------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhh---------
Confidence 468998887777544443 2457789999999999999999999997 34442 222111101
Q ss_pred HHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh---------chhhccC--CCCCC----------CCCCc
Q 048789 229 KKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV---------DLAQVGL--PVSSC----------ASSSN 287 (724)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~l~~--~~~~~----------~~g~s 287 (724)
..+++..+.. + +++-+|.+|++..-. ..++... ....+ .+- +
T Consensus 89 --------------~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F-T 151 (233)
T PF05496_consen 89 --------------AGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF-T 151 (233)
T ss_dssp --------------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----E
T ss_pred --------------HHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc-e
Confidence 1112221111 1 234467778876421 0111100 00000 011 3
Q ss_pred EEEEecCChHHHhhccCcc--ceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHh
Q 048789 288 KIVFTTREIEVCGQMEAHR--SFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMA 363 (724)
Q Consensus 288 ~iliTtr~~~v~~~~~~~~--~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~ 363 (724)
-|=-|||...+...+..-. ..+++..+.+|-.++..+.+..-.... -++.+.+|++.|.|-|.-+.-+-...+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3555888766554444333 457999999999999988775443222 256789999999999976655444443
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.28 E-value=1.9e-07 Score=89.25 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=83.7
Q ss_pred hhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCcc
Q 048789 517 LLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEV 596 (724)
Q Consensus 517 L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l 596 (724)
+.....|..++++.+.++.+..-..... .++.|.++.+ ++..+ .++..+++|..|++++|.++.+ ..|-
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~P----kir~L~lS~N-~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh--- 348 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAP----KLRRLILSQN-RIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWH--- 348 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhcc----ceeEEecccc-ceeee--hhhhhcccceEeecccchhHhh-hhhH---
Confidence 3444556667777777766654443332 5667777653 23333 3577889999999999888763 4443
Q ss_pred ccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccC--CCCCCCCccEEeec
Q 048789 597 KRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHS--KALPFPCLKEMSVD 674 (724)
Q Consensus 597 ~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~--~~~~~p~L~~L~i~ 674 (724)
..+-|.+.|.+.... ++.+ ..++.+-+|.+|++++ .+++.+.. +.+.+|||+.+.+.
T Consensus 349 -----~KLGNIKtL~La~N~-iE~L--------------SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 349 -----LKLGNIKTLKLAQNK-IETL--------------SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred -----hhhcCEeeeehhhhh-Hhhh--------------hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhc
Confidence 246677777776542 3333 2455677888888887 55555543 56789999998888
Q ss_pred CCC
Q 048789 675 GCP 677 (724)
Q Consensus 675 ~C~ 677 (724)
+.|
T Consensus 408 ~NP 410 (490)
T KOG1259|consen 408 GNP 410 (490)
T ss_pred CCC
Confidence 765
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.25 E-value=2e-05 Score=77.81 Aligned_cols=162 Identities=16% Similarity=0.160 Sum_probs=99.1
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHH
Q 048789 166 VWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEE 245 (724)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (724)
|..++..+....+.+||++|+||||||+.+.... +.+- ..+|..|....-..-.+.|+++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 3344556788999999999999999999999876 2221 4566665543333333344433211
Q ss_pred HHHHHHHHHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE--ecCChHH---HhhccCccceeeccCChHHH
Q 048789 246 KANKIFKILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF--TTREIEV---CGQMEAHRSFKVECLGFDDA 318 (724)
Q Consensus 246 ~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili--Ttr~~~v---~~~~~~~~~~~l~~L~~~~~ 318 (724)
...+.++|.+|.+|+|..- .+-+ ..+|.-.+| .-++| ||.+... +..+....++.+++|..++-
T Consensus 216 -----~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G-~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 216 -----EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENG-DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred -----HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccC-ceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 1234678999999999542 2222 234555566 76666 6666543 23334567899999999999
Q ss_pred HHHHHHHhC---CCCC---CCCC----ChHHHHHHHHHHhCCCCc
Q 048789 319 WKLFEEKVG---RDTL---DTHP----DIPELAEAVARECGGLPL 353 (724)
Q Consensus 319 ~~lf~~~~~---~~~~---~~~~----~~~~~~~~i~~~c~g~Pl 353 (724)
..++.+... .... ..+. -...+.+-++..|.|--.
T Consensus 287 ~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 287 VTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999988442 2221 1111 123355566677777554
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2.4e-05 Score=86.22 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+... -...++. ..+......+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~-------~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTS-------QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCC-------CCCcccHHHHHHhcCCC
Confidence 3589999999999999987664 4668999999999999999988772 1111110 01111111111111000
Q ss_pred CCc---cccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChH-HHhh-
Q 048789 233 LFN---ESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIE-VCGQ- 301 (724)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~-v~~~- 301 (724)
... +.......++..+.+... ..++.-++|||+++.. ..++.+...+..-... .++|++|++.+ +...
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~-v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH-VKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC-eEEEEEECChhhccchh
Confidence 000 000111223332222221 1245558899999764 2344443333222233 67666666543 3221
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc-hHHH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL-ALIT 357 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~ 357 (724)
......+.+..++.++..+.+.+.+....... -.+..+.|++.++|... ++..
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 12245789999999999998888765433222 24557788899988664 4444
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.23 E-value=1.2e-07 Score=94.98 Aligned_cols=140 Identities=22% Similarity=0.322 Sum_probs=81.1
Q ss_pred ccCcEEeeccCCCCcccccccc-cccccceEEeecC-CcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCC
Q 048789 549 STPSLCLSHFNNSKSLGVFSLA-SLRHLQTLHLTYN-DLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEK 626 (724)
Q Consensus 549 ~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~ 626 (724)
.|+.|+.+++...++..+..|. .+++|+.|.+.++ .++......++ -+.+.|+.+++..|....+-
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-------rn~~~Le~l~~e~~~~~~d~----- 362 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-------RNCPHLERLDLEECGLITDG----- 362 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-------cCChhhhhhcccccceehhh-----
Confidence 4566666666665555444443 4677777777762 23322222222 23566777777776544332
Q ss_pred CCCcccccccCCCcccccceeccccccccccc-----cCCCCCCCCccEEeecCCCCCCCCCCC---CCCCCCcceEEec
Q 048789 627 LSEVPAEVMENLIPFARLERLILEELKNLKTI-----HSKALPFPCLKEMSVDGCPLLKKLPLD---CNRGLERKIIIKG 698 (724)
Q Consensus 627 ~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~-----~~~~~~~p~L~~L~i~~C~~L~~lp~~---~~~~l~~l~~~~~ 698 (724)
.+......+|.|+.|.|++|...+.- .....++..|+.+++.+||.+..--+. ..+.++.+..+++
T Consensus 363 ------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 363 ------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 12234456788888888887766654 223456777888888888887653221 2236777777777
Q ss_pred hhhhhhcc
Q 048789 699 QRRWWNEL 706 (724)
Q Consensus 699 ~~~~~~~l 706 (724)
..-.-+.+
T Consensus 437 q~vtk~~i 444 (483)
T KOG4341|consen 437 QDVTKEAI 444 (483)
T ss_pred hhhhhhhh
Confidence 65544443
No 60
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.23 E-value=5.8e-06 Score=87.20 Aligned_cols=170 Identities=20% Similarity=0.276 Sum_probs=98.8
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|++..+++|.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4689999999999887632 134569999999999999999999987 2333 22211
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh----------------chhhccCCCC--C
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV----------------DLAQVGLPVS--S 281 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~ 281 (724)
..+.... ++ ........+.+.. ...+.+|++||++... .+..+...+. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0111222222222 3467899999986531 1111111111 1
Q ss_pred CCCCCcEEEEecCChHHH-----hhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 282 CASSSNKIVFTTREIEVC-----GQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 282 ~~~g~s~iliTtr~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
...+ .+||.||...... .....+..+.+...+.++..++|..++.........+ ...+++.+.|..
T Consensus 258 ~~~~-v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGN-VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCC-EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1224 6788888754321 1112245688999999999999998876544222223 356667777765
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.1e-05 Score=88.44 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=104.8
Q ss_pred CccccchhhHHHHHHHhhcCCceE-EEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGI-VGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+..+..|.+++..+++.- +.++|+.|+||||+|+.+++... ........ .+....-...|.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~-------pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTAT-------PCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCC-------CCCCchHHHHHhcCCC
Confidence 358999999999999988776654 58999999999999999998872 11110000 0000000001110000
Q ss_pred CC---ccccCCcCHH---HHHHHHHH-HHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHHhh-
Q 048789 233 LF---NESWQSKGLE---EKANKIFK-ILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVCGQ- 301 (724)
Q Consensus 233 ~~---~~~~~~~~~~---~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~~~- 301 (724)
.. .+.......+ ++.+.+.. -..+++-++|||++... ...+.+...+-.-... .++|+ ||....+...
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~-vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTV 166 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC-eEEEEECCCchhchHHH
Confidence 00 0000001122 22222211 12456779999999753 3334433332221223 55555 4444444322
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
......|++.+++.++....+.+.+...... --.+....|++.++|.|.-+..
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2234578999999999999888766432211 1245577889999998864443
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.22 E-value=4.1e-05 Score=79.65 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=102.7
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe--CCcCCHHHHHHHHHHHc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV--SKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~l 231 (724)
.+++|++..++.+..++.....+.+.++|.+|+||||+|+.+++... ...+.. .++.. +....... ....+.++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~-~~i~~~~~~~~~~~~-~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRE-NFLELNASDERGIDV-IRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCcccc-ceEEeccccccchHH-HHHHHHHH
Confidence 35799999999999999877777789999999999999999999862 112211 12222 22111111 11111111
Q ss_pred CCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCCh-HHHhhc-cCccc
Q 048789 232 GLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREI-EVCGQM-EAHRS 307 (724)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~-~v~~~~-~~~~~ 307 (724)
..... .-...+-++++|++... .....+...+...... +++|+++... .+.... .....
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~-~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQN-TRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCC-CeEEEEeCCccccchhHHHHhhe
Confidence 00000 00123558899998643 2222333222222334 5666666432 221111 12336
Q ss_pred eeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 308 FKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 308 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
+++.+++.++....+...+.......+ .+....+++.++|.+..+.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 789999999998888887754332222 4567888999999876543
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=2.3e-06 Score=81.14 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 156 VVGLQSTFDGVWKCLM---EEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 156 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|+||+++++++...+. ....+.+.|+|.+|+|||+|.+.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 2457899999999999999999999988
No 64
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.22 E-value=2.6e-06 Score=86.91 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=66.3
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC--CHHHHHHHHHHHcCCCccccCCc
Q 048789 165 GVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL--QLAKIQEGIAKKMGLFNESWQSK 241 (724)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 241 (724)
++++++.. +.-...+|+|++|+||||||+.+|+.. . ..+|+..+||.+.+.. +..++++.|...+-... ...
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st---~d~ 232 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST---FDE 232 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC---CCC
Confidence 34455544 344578999999999999999999998 3 3489999999998887 77888888863221111 111
Q ss_pred CHHH-------HHHHHHHH-HccCceEEEeccccC
Q 048789 242 GLEE-------KANKIFKI-LSKKKFVLLLDDIWE 268 (724)
Q Consensus 242 ~~~~-------~~~~l~~~-l~~k~~LlVlDdv~~ 268 (724)
+... ..+..... -.+++++|++|++..
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111 11111111 267999999999964
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=4.9e-05 Score=79.91 Aligned_cols=190 Identities=16% Similarity=0.189 Sum_probs=103.8
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++... ...... ..++........+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 3589999999999988877654 5679999999999999999998862 111100 000000001111111100
Q ss_pred CCcc---ccCCcCHHHHHHHHHHHH-----ccCceEEEeccccChh--chhhccCCCCCCCCCCcEEEEecCC-hHHHhh
Q 048789 233 LFNE---SWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWELV--DLAQVGLPVSSCASSSNKIVFTTRE-IEVCGQ 301 (724)
Q Consensus 233 ~~~~---~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~g~s~iliTtr~-~~v~~~ 301 (724)
.... .......++. +.+.+.+ .+++-++|+|++.... .++.+...+...... .++|++|.+ ..+...
T Consensus 88 ~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~-~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH-IKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC-eEEEEEcCChHhhhHH
Confidence 0000 0000122222 1222221 2355689999997643 344443333322233 566666544 333222
Q ss_pred c-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 302 M-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 302 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
+ +....+++.+++.++..+.+.+.+....... -.+....|++.++|.|..+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 1 2245789999999999888877654322111 13456788999999886443
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.20 E-value=2.1e-05 Score=77.29 Aligned_cols=171 Identities=11% Similarity=0.119 Sum_probs=99.5
Q ss_pred ccccchh-hHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 155 TVVGLQS-TFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 155 ~~vGr~~-~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.++|... ....+.++........+.|+|+.|+|||+|++.+++... ..-..+.++++.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~-------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW-------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh--------------
Confidence 3446333 333333444344556899999999999999999998862 1223455665532100
Q ss_pred CccccCCcCHHHHHHHHHHHHccCceEEEeccccCh---hchhh-ccCCCCCC-CCCCcEEEEecCCh---------HHH
Q 048789 234 FNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL---VDLAQ-VGLPVSSC-ASSSNKIVFTTREI---------EVC 299 (724)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~~~~~-~~g~s~iliTtr~~---------~v~ 299 (724)
...+.. +.+. +--++++||+... ..|+. +...+... ..|..++|+||+.. ...
T Consensus 87 --------~~~~~~----~~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 87 --------FVPEVL----EGME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred --------hhHHHH----HHhh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHH
Confidence 001111 1111 1237899999653 23332 11111111 12214788988754 334
Q ss_pred hhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 300 GQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 300 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
..+.....++++++++++-.+++.+++.......+ +++..-|++.+.|..-++..+
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 55556678999999999999998876644322222 567888888888776655543
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.20 E-value=1.1e-06 Score=94.37 Aligned_cols=101 Identities=27% Similarity=0.370 Sum_probs=59.2
Q ss_pred CcceEEEeecccccccChhhhhcCC-CceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMA-SLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
+.+..|.+.+|.+..+++. ...+. +|+.|+++++. .+|..++.+++|+.|++++|.+..+|...+.+.+|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 4556666666655554432 33332 56666666666 55556666666666666666666666655566666666666
Q ss_pred CcccccccChhhhcCCCcCcEEecccc
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYEC 495 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~ 495 (724)
++ .+..+|.. +..+..|++|.+..|
T Consensus 195 ~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 195 GN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred CC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 66 35566653 344555666666544
No 68
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.20 E-value=1.5e-05 Score=90.06 Aligned_cols=169 Identities=19% Similarity=0.245 Sum_probs=96.4
Q ss_pred ccccchhhHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 155 TVVGLQSTFD---GVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 155 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
+++|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|.. ++.+. ....
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~-~~i~---------- 91 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVL-AGVK---------- 91 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhh-hhhH----------
Confidence 5788887664 45566667777788999999999999999999876 333321 11100 0000
Q ss_pred CCCccccCCcCHHHHHHHHHHHH--ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEe--cCChH--HHhh-c
Q 048789 232 GLFNESWQSKGLEEKANKIFKIL--SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFT--TREIE--VCGQ-M 302 (724)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliT--tr~~~--v~~~-~ 302 (724)
+..+......+.+ .+++.+++|||++.- ...+.+...+ ..+ +.++++ |.+.. +... .
T Consensus 92 ----------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g-~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 92 ----------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENG-TITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ----------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCc-eEEEEEecCCChHhhhhhHhh
Confidence 1111112222222 246779999999643 3344443322 234 555553 33321 2111 1
Q ss_pred cCccceeeccCChHHHHHHHHHHhCCCC----CCCCCChHHHHHHHHHHhCCCCch
Q 048789 303 EAHRSFKVECLGFDDAWKLFEEKVGRDT----LDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
.....+.+++++.++...++.+.+.... .....--++....|++.+.|.-..
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 1245789999999999999988764110 000111245567788888886543
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.19 E-value=2e-05 Score=81.42 Aligned_cols=179 Identities=13% Similarity=0.154 Sum_probs=101.0
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc-EEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD-FVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
+++|.+..+..|.+++..+..+.+.++|++|+||||+|+.+++... ...|. .++-++.+...... ..+.++..+..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~ 90 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFAQ 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHHh
Confidence 5789888888888888777777788999999999999999998862 12222 11112222222211 12222211110
Q ss_pred CccccCCcCHHHHHHHHHHHHccCceEEEeccccChh--chhhccCCCCCCCCCCcEEEEecCCh-HHHhhc-cCcccee
Q 048789 234 FNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV--DLAQVGLPVSSCASSSNKIVFTTREI-EVCGQM-EAHRSFK 309 (724)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~g~s~iliTtr~~-~v~~~~-~~~~~~~ 309 (724)
... . .-.++.-++++|+++... ....+...+...... +++++++... .+...+ .....++
T Consensus 91 ~~~---~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~-t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 91 KKV---T------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT-TRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred ccc---c------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC-ceEEEEeCCccccchhHHHhhhccc
Confidence 000 0 001345689999997532 222222222221233 6666666442 221111 1234688
Q ss_pred eccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 310 VECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 310 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
+.++++++....+.+.+.......+ .+....|++.++|-...+
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 9999999998888877654332222 445788888898866443
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6.3e-06 Score=89.48 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=108.2
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
++++|.+...+.|.+++..+... .+.++|++|+||||+|+.+++.. ...+.+...+|.+.+... +..-....+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 35899998888888888876654 56999999999999999999887 222222223333322110 0000000000011
Q ss_pred CCccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecC-ChHHHhhc-c
Q 048789 233 LFNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTR-EIEVCGQM-E 303 (724)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr-~~~v~~~~-~ 303 (724)
.. .....++.. .+.+.+ .+++-++|+|+++.. ..++.+...+...... ..+|++|. ...+...+ .
T Consensus 92 ~~----~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~-t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA----SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEH-VIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc----ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCC-EEEEEEcCChhhCChHHhc
Confidence 00 111222222 222222 346668999999753 3344444444332233 45555444 33332222 2
Q ss_pred CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 304 AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 304 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
....+++.+++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 345789999999999999988775433222 2455788999999988644
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.7e-05 Score=83.65 Aligned_cols=195 Identities=15% Similarity=0.148 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCC-CcEEEEEEeCCcCCHHHHHHHHHHH-
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNS-FDFVIWIVVSKDLQLAKIQEGIAKK- 230 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~~~- 230 (724)
.++||-+..++.|.+++..+++. .+.++|..|+||||+|+.+.+........ -.... +..+......+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 35899999999999999877654 56899999999999999999887210000 00000 0000111111111100
Q ss_pred ----cCCCccccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcE-EEEecCChHHH
Q 048789 231 ----MGLFNESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNK-IVFTTREIEVC 299 (724)
Q Consensus 231 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~-iliTtr~~~v~ 299 (724)
+.... ......++..+.+... ..++.-++|||+++.. ..++.+...+..-..+ .+ |++||....+.
T Consensus 92 hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~-v~FILaTtep~kLl 168 (700)
T PRK12323 92 FVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH-VKFILATTDPQKIP 168 (700)
T ss_pred CCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCC-ceEEEEeCChHhhh
Confidence 00000 0112233333332221 1456679999999753 3344443333222223 44 55565555553
Q ss_pred hhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 300 GQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
..+ .....+.+..++.++..+.+.+.+....... ..+..+.|++.++|.|.-+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2245788999999999888887664332111 1345678899999999755443
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.2e-06 Score=65.72 Aligned_cols=59 Identities=34% Similarity=0.547 Sum_probs=47.0
Q ss_pred ccCCeeecCCCCccccch-HHhccccCcEeecCCcccccccChhhhcCCCcCcEEeccccC
Q 048789 437 VSLQHLDLSHSRIERLPI-EFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 437 ~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
++|++|++++|.+..+|. .+..+++|++|++++| .+..+|++.+..+++|++|++.+|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888888875 5678888888888877 4677887778888888888888663
No 73
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.15 E-value=5.8e-05 Score=83.18 Aligned_cols=197 Identities=16% Similarity=0.171 Sum_probs=126.4
Q ss_pred CCccccchhhHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKK 230 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~ 230 (724)
+...|-|. ++.+.|.. .+.+.+.|..++|.||||++.+..... ..-..+.|.+.+.. .++..+...++..
T Consensus 18 ~~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHH
Confidence 34456665 44555555 478999999999999999999998743 33457899998754 5788888888888
Q ss_pred cCCCccc-----------cCCcCHHHHHHHHHHHHc--cCceEEEeccccChh---chhhccCCCCCCCCCCcEEEEecC
Q 048789 231 MGLFNES-----------WQSKGLEEKANKIFKILS--KKKFVLLLDDIWELV---DLAQVGLPVSSCASSSNKIVFTTR 294 (724)
Q Consensus 231 l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~g~s~iliTtr 294 (724)
++.-... ....+...+.+.+..-+. .+++.+||||..-.. --..+...+...-.+ -..++|||
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~-l~lvv~SR 168 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPEN-LTLVVTSR 168 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCC-eEEEEEec
Confidence 8632211 122334445555555443 368999999975421 112222222233334 78999999
Q ss_pred ChHHHhhc--c-Cccceee----ccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhc
Q 048789 295 EIEVCGQM--E-AHRSFKV----ECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMAS 364 (724)
Q Consensus 295 ~~~v~~~~--~-~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~ 364 (724)
+..-.... . .+...++ -.++.+|+-.+|....+..- ...-.+.+.+...|-+-|+..++=.++.
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 87532211 1 1122222 34789999999987764322 1334678888899999888888777763
No 74
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.15 E-value=2.1e-05 Score=91.15 Aligned_cols=206 Identities=13% Similarity=0.183 Sum_probs=117.9
Q ss_pred cccchhhHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCC---HHHHHHHHHH
Q 048789 156 VVGLQSTFDGVWKCLME---EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQ---LAKIQEGIAK 229 (724)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~---~~~~~~~i~~ 229 (724)
++||+.+.+.|...+.. +...++.+.|..|+|||++++.|.....+.+..|-...+-....... ..+..++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999988865 56679999999999999999999998743322221111111111111 2223333333
Q ss_pred Hc-------------------CCCcccc--------------------CCcCHHHH-----HHHHHHHH-ccCceEEEec
Q 048789 230 KM-------------------GLFNESW--------------------QSKGLEEK-----ANKIFKIL-SKKKFVLLLD 264 (724)
Q Consensus 230 ~l-------------------~~~~~~~--------------------~~~~~~~~-----~~~l~~~l-~~k~~LlVlD 264 (724)
++ +...... .+...+.+ ...+.-.. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 1111000 01111111 12222233 3469999999
Q ss_pred cc-cChhc-hh---hccCCCCCCCCCCcEEEEecCChH----HHhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCC
Q 048789 265 DI-WELVD-LA---QVGLPVSSCASSSNKIVFTTREIE----VCGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHP 335 (724)
Q Consensus 265 dv-~~~~~-~~---~l~~~~~~~~~g~s~iliTtr~~~----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 335 (724)
|+ |-+.. ++ .+......+......|..+..... +.........+.+.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 43321 11 111111100000022333222221 222223446899999999999999999887643 2
Q ss_pred ChHHHHHHHHHHhCCCCchHHHHHHHHhcC
Q 048789 336 DIPELAEAVARECGGLPLALITVGRAMASR 365 (724)
Q Consensus 336 ~~~~~~~~i~~~c~g~Plai~~~~~~l~~~ 365 (724)
...+..+.|+++..|+|+-+..+-..+...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 335668999999999999999888777663
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=98.15 E-value=3e-05 Score=84.85 Aligned_cols=179 Identities=17% Similarity=0.232 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 229 (724)
.+++|.++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++.. . |+. +-++.+...... ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~~-ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WEV-IELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CCE-EEEcccccccHH-HHHHHHH
Confidence 3589999999999999864 226789999999999999999999987 1 332 223334332222 2233332
Q ss_pred HcCCCccccCCcCHHHHHHHHHHHHc-cCceEEEeccccChhc------hhhccCCCCCCCCCCcEEEEecCChH-HHh-
Q 048789 230 KMGLFNESWQSKGLEEKANKIFKILS-KKKFVLLLDDIWELVD------LAQVGLPVSSCASSSNKIVFTTREIE-VCG- 300 (724)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~g~s~iliTtr~~~-v~~- 300 (724)
...... .+. .++-+||+|+++.... +..+...+.. .+ ..||+|+.+.. ...
T Consensus 87 ~~~~~~-----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~-~~iIli~n~~~~~~~k 146 (482)
T PRK04195 87 EAATSG-----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AK-QPIILTANDPYDPSLR 146 (482)
T ss_pred HhhccC-----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CC-CCEEEeccCccccchh
Confidence 221110 011 3677999999975321 3333322221 22 44666654322 111
Q ss_pred hc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHH
Q 048789 301 QM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAM 362 (724)
Q Consensus 301 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 362 (724)
.+ .....+.+.+++.++....+.+.+.......+ .+....|++.++|-...+......+
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 22456888999999988888877654332222 4567888999988776555433333
No 76
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=1.6e-06 Score=65.11 Aligned_cols=57 Identities=33% Similarity=0.475 Sum_probs=35.1
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSR 448 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~ 448 (724)
++|++|++.+|.+..+++..|..+++|++|+++++. .+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666777666666666666666666666666665 333 345566666666666654
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=5.4e-05 Score=82.61 Aligned_cols=191 Identities=13% Similarity=0.114 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+.....|.+++..++ .+.+.++|+.|+||||+|+.+++... -....+. ..+......+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~~-------~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVTS-------TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCCC-------CCCccCHHHHHHhcCCC
Confidence 358999999999999998765 45779999999999999999998862 1111100 00111111111111000
Q ss_pred CCc---cccCCcCHHHHHHHHHH----HHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCCh-HHH-hh
Q 048789 233 LFN---ESWQSKGLEEKANKIFK----ILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREI-EVC-GQ 301 (724)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~-~v~-~~ 301 (724)
... +.......++..+.+.. -..++.-++|+|++... .....+...+.....+ .++|++|.+. .+. ..
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~-v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH-VKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC-cEEEEEECChHhhhHHH
Confidence 000 00001123332222211 11356668999999753 2333333333222233 5666666543 332 11
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
......+++.+++.++....+.+.+....... -.+....|++.++|.+..+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 23345789999999999888887765433222 14456778888988775544
No 78
>PRK09087 hypothetical protein; Validated
Probab=98.11 E-value=3.8e-05 Score=74.62 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=95.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
..+.+.|+|..|+|||+|++.++... .. .+++. ..+...++..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~~-------~~i~~------~~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-DA-------LLIHP------NEIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-CC-------EEecH------HHcchHHHHh-----------------------
Confidence 34679999999999999999988764 11 13322 1111112111
Q ss_pred HccCceEEEeccccChh-chhhccCCCCCC-CCCCcEEEEecCC---------hHHHhhccCccceeeccCChHHHHHHH
Q 048789 254 LSKKKFVLLLDDIWELV-DLAQVGLPVSSC-ASSSNKIVFTTRE---------IEVCGQMEAHRSFKVECLGFDDAWKLF 322 (724)
Q Consensus 254 l~~k~~LlVlDdv~~~~-~~~~l~~~~~~~-~~g~s~iliTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 322 (724)
+.+ -++++||+.... .-+.+...+... ..| ..+|+|++. .+....+.....+++++++.++-.+++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 111 278889995421 111121111111 234 678888874 334455566678999999999999999
Q ss_pred HHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHH-----h--cCCChhHHHHHHHH
Q 048789 323 EEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAM-----A--SRKTPREWEHAIEV 377 (724)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l-----~--~~~~~~~w~~~~~~ 377 (724)
.+++.......+ +++..-|++.+.|..-++..+-..+ . ...+....+.++..
T Consensus 163 ~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 163 FKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 998854332222 5667888888888777665432222 1 12455566666543
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4.6e-05 Score=80.78 Aligned_cols=194 Identities=14% Similarity=0.153 Sum_probs=106.0
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++... -...... ..+.....-..+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~~---~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIGN---EPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccCc---cccCCCcHHHHHHccCCccce
Confidence 35799998899999998887754 689999999999999999999872 1111000 011111111111111100000
Q ss_pred CCccccCCcCHH---HHHHHHHHH-HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE-EecCChHHHhhc-cC
Q 048789 233 LFNESWQSKGLE---EKANKIFKI-LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV-FTTREIEVCGQM-EA 304 (724)
Q Consensus 233 ~~~~~~~~~~~~---~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il-iTtr~~~v~~~~-~~ 304 (724)
.-+. ......+ ++.+.+... ..++.-++|+|++... ..++.+...+..-... ..+| .||....+...+ ..
T Consensus 94 EIda-as~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~-viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 94 EIDA-ASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH-IVFILATTEFHKIPETILSR 171 (484)
T ss_pred eech-hhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc-eEEEeecCChhhccHHHHhh
Confidence 0000 0011122 222222221 2356669999999753 3445443333221122 4444 455544443222 22
Q ss_pred ccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 305 HRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 305 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
...|.+.+++.++..+.+.+.+....... -.+....|++.++|.+.-+.
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHHH
Confidence 34689999999988888877664332111 24567889999999886433
No 80
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1.5e-05 Score=81.92 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc--CCHHHHHHHHHHHcCCCccccCCcC----HHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD--LQLAKIQEGIAKKMGLFNESWQSKG----LEEK 246 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~ 246 (724)
..-..++|+|++|+|||||++.+++.. . .++|+..+|+.+.+. .++.++++.+...+-...-+..... .+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 345689999999999999999999998 3 348999999998866 7899999999544322111001111 1111
Q ss_pred HHHHHHH-HccCceEEEeccccC
Q 048789 247 ANKIFKI-LSKKKFVLLLDDIWE 268 (724)
Q Consensus 247 ~~~l~~~-l~~k~~LlVlDdv~~ 268 (724)
.+..... -.|++++|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 2222222 268999999999964
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.07 E-value=4.9e-05 Score=74.52 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=90.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... . ..+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~----------------~----~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR----------------G----PELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh----------------h----HHHHHhh
Confidence 35789999999999999999998762 1123456665432 2110 0 1122222
Q ss_pred ccCceEEEeccccCh---hchhh-ccCCCCCC-CCCCcEEEEecCChHH---------HhhccCccceeeccCChHHHHH
Q 048789 255 SKKKFVLLLDDIWEL---VDLAQ-VGLPVSSC-ASSSNKIVFTTREIEV---------CGQMEAHRSFKVECLGFDDAWK 320 (724)
Q Consensus 255 ~~k~~LlVlDdv~~~---~~~~~-l~~~~~~~-~~g~s~iliTtr~~~v---------~~~~~~~~~~~l~~L~~~~~~~ 320 (724)
.+-. +||+||+... ..|+. +...+... ..| ..+|+|++...- ...+.....+++++++.++-..
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 2222 6889999643 23432 22222211 234 678888875432 2333445678999999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHH
Q 048789 321 LFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359 (724)
Q Consensus 321 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 359 (724)
++..++.......+ +++..-|++.+.|..-.+..+-
T Consensus 174 il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 174 ALQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 99866643322222 5677888888888766554433
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.0001 Score=79.52 Aligned_cols=195 Identities=16% Similarity=0.140 Sum_probs=103.0
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCC-CCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPN-SFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
++++|.+.....+...+..+.. +.+.++|++|+||||+|+.+++....... .+. .+........+...-
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~---------pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVE---------PCNECRACRSIDEGT 84 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCC---------CCcccHHHHHHhcCC
Confidence 3589998888888888777665 46899999999999999999887621100 000 000000011110000
Q ss_pred CCCcccc---CCcCHHHHHHHHHHH-----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHHh
Q 048789 232 GLFNESW---QSKGLEEKANKIFKI-----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVCG 300 (724)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~~ 300 (724)
....... .....++.. .+.+. ..+++-++|+|+++.. ...+.+...+...... ..+++ |+....+..
T Consensus 85 ~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~-vv~Ilattn~~kl~~ 162 (472)
T PRK14962 85 FMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH-VVFVLATTNLEKVPP 162 (472)
T ss_pred CCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc-EEEEEEeCChHhhhH
Confidence 0000000 011122221 22222 2345669999998643 2233333333222222 44444 443344433
Q ss_pred hc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCC-CchHHHHHHHH
Q 048789 301 QM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGL-PLALITVGRAM 362 (724)
Q Consensus 301 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~~~l 362 (724)
.+ .....+.+.+++.++....+.+.+.......+ .+....|++.++|- +.++..+-.+.
T Consensus 163 ~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 163 TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22 23457889999999988888877643321221 45567788877654 56666665433
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00015 Score=78.62 Aligned_cols=192 Identities=15% Similarity=0.122 Sum_probs=107.6
Q ss_pred ccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcE-EEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 155 TVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDF-VIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
+++|-+..+..+...+..+. .+.+.++|+.|+||||+|+.+++... -...... -.+..+... .-...|.....
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C----~~C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQC----TNCISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCC----hHHHHHhcCCC
Confidence 57999988888888777665 35889999999999999999999872 1111000 000000000 01111111000
Q ss_pred CCcc---ccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE-EecCChHHHhhc
Q 048789 233 LFNE---SWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV-FTTREIEVCGQM 302 (724)
Q Consensus 233 ~~~~---~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il-iTtr~~~v~~~~ 302 (724)
.... .......++..+.+... ..+++-++|+|+++.. ..++.+...+...... +.+| .||+...+...+
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~-~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH-IIFIFATTEVQKIPATI 175 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC-EEEEEEeCChHHhhHHH
Confidence 0000 00112333333332221 2356778999999863 3455554444332333 5554 455555554333
Q ss_pred c-CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 303 E-AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 303 ~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
. ....+++.+++.++....+.+.+........ .+....|++.++|.+.-+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 3356889999999999999888754332211 345677889999977544
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=9.5e-05 Score=80.56 Aligned_cols=180 Identities=17% Similarity=0.146 Sum_probs=102.7
Q ss_pred ccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCC------------------CCcEEEEEEeC
Q 048789 155 TVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPN------------------SFDFVIWIVVS 215 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~v~ 215 (724)
+++|.+..+..+...+..+.. ..+.++|+.|+||||+|+.+++....... .|.-.+++...
T Consensus 17 diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa 96 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA 96 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc
Confidence 579999999999999887654 45789999999999999999987621000 01111111111
Q ss_pred CcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH-HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE-E
Q 048789 216 KDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI-LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV-F 291 (724)
Q Consensus 216 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il-i 291 (724)
...... ...++.+.+... ..+++-++|+|++..- ...+.+...+...... ..+| +
T Consensus 97 s~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~-v~fIL~ 155 (546)
T PRK14957 97 SRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY-VKFILA 155 (546)
T ss_pred cccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC-ceEEEE
Confidence 111111 111222222211 2356679999998643 3344443333332233 5444 5
Q ss_pred ecCChHHHhh-ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc-hHHHH
Q 048789 292 TTREIEVCGQ-MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL-ALITV 358 (724)
Q Consensus 292 Ttr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 358 (724)
||....+... ......+++.+++.++....+.+.+...... --......|++.++|.+. |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5554444322 2235678999999999887777655332211 124456778888988664 44443
No 85
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.03 E-value=7e-07 Score=85.44 Aligned_cols=102 Identities=28% Similarity=0.372 Sum_probs=59.3
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
.+++|.|++++|.+..+.. +..+.+|..|||++|. ++-..-.+|-+.++|+|++|.++.| +++++|++|..||++
T Consensus 306 ~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLS 382 (490)
T ss_pred ccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheecccc
Confidence 4566666666666544422 5556666666666665 3332333455666666666666665 356667777777777
Q ss_pred CcccccccCh-hhhcCCCcCcEEeccccC
Q 048789 469 YTYGVLKIPP-KVISNLKILQTLRMYECA 496 (724)
Q Consensus 469 ~~~~~~~lp~-~~i~~l~~L~~L~l~~~~ 496 (724)
+|+ +..+.. ..|++|+.|+++.+.+|+
T Consensus 383 ~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 383 SNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 663 444332 226677777777666554
No 86
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.4e-06 Score=87.93 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=94.0
Q ss_pred CCCCCcceEEEeecccccccC--hhhhhcCCCceEEEccCCC-CCchh---hhccccCCeeecCCCCcc--ccchHHhcc
Q 048789 388 SPVCPRLRTLFLSSNIFHRVN--SDFFQSMASLRVLKLSYSN-PLLFE---ISKVVSLQHLDLSHSRIE--RLPIEFKYL 459 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~-~lp~~---i~~L~~L~~L~L~~~~i~--~Lp~~i~~L 459 (724)
.+.|++++.|+|+.|-+.... -.+...+++|+.|+++.|. ..|.+ ...+.+|+.|.|+.|.+. ..-.....+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 467899999999999654332 2456789999999999998 44432 346899999999999887 233334567
Q ss_pred ccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhh
Q 048789 460 VNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHAL 536 (724)
Q Consensus 460 ~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~ 536 (724)
++|..|++.+|..+..-... ...++.|+.|++++|..... ......+.++.|+.|.++.+++.++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~-----------~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF-----------DQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred CcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc-----------ccccccccccchhhhhccccCcchh
Confidence 88999999988422211111 34577899999998765431 1123356677777777776666543
No 87
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.02 E-value=0.00014 Score=77.08 Aligned_cols=198 Identities=20% Similarity=0.247 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
+++.|++..++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4688999999998886632 245679999999999999999999986 222 222221
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh------------c----hhhccCCCCC--
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV------------D----LAQVGLPVSS-- 281 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~-- 281 (724)
..+. .... .. .......+.+.. ...+.+|+|||++... . +..+...+..
T Consensus 199 ~~l~----~~~~-------g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKFI-------GE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhhc-------cc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1110 01 112222333322 3467899999987531 0 1111111111
Q ss_pred CCCCCcEEEEecCChHHHhh--c---cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch--
Q 048789 282 CASSSNKIVFTTREIEVCGQ--M---EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA-- 354 (724)
Q Consensus 282 ~~~g~s~iliTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla-- 354 (724)
...+ ..||.||...+.... . .-+..+.+.+.+.++-.++|..++.........++ ..+++.+.|.--+
T Consensus 267 ~~~~-v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~sgadl 341 (389)
T PRK03992 267 PRGN-VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGASGADL 341 (389)
T ss_pred CCCC-EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCCHHHH
Confidence 1123 677777776443221 1 12456889999999999999988765442222333 4556666664422
Q ss_pred --HHHHHHHH--hcC---CChhHHHHHHHHHhh
Q 048789 355 --LITVGRAM--ASR---KTPREWEHAIEVLRC 380 (724)
Q Consensus 355 --i~~~~~~l--~~~---~~~~~w~~~~~~l~~ 380 (724)
+..-|++. +.. -+.++...+++....
T Consensus 342 ~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 342 KAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMG 374 (389)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhc
Confidence 12222222 222 355666666665543
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.4e-07 Score=88.56 Aligned_cols=58 Identities=34% Similarity=0.258 Sum_probs=29.8
Q ss_pred CCeeecCCCCcc--ccchHHhccccCcEeecCCcccccccChhhhcCCCcCcEEeccccCC
Q 048789 439 LQHLDLSHSRIE--RLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECAT 497 (724)
Q Consensus 439 L~~L~L~~~~i~--~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~ 497 (724)
|++|||+.+.|+ ++-.-+..+.+|+.|.|.+...-..+-.. |.+=.+|+.|+++.|+.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG 246 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSG 246 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccc
Confidence 666666666554 44444455556666666555321112222 44555566666665543
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.98 E-value=0.00011 Score=71.11 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=91.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
...+.|+|..|+|||.|.+++++...+.... ..+++++ ..++.+.+...+... .. ..+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~------~~~f~~~~~~~~~~~-------~~----~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLS------AEEFIREFADALRDG-------EI----EEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEE------HHHHHHHHHHHHHTT-------SH----HHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeec------HHHHHHHHHHHHHcc-------cc----hhhhhhh
Confidence 4568999999999999999999987321122 2455553 456666666555321 11 2333444
Q ss_pred ccCceEEEeccccChh---chhh-ccCCCCCC-CCCCcEEEEecCCh---------HHHhhccCccceeeccCChHHHHH
Q 048789 255 SKKKFVLLLDDIWELV---DLAQ-VGLPVSSC-ASSSNKIVFTTREI---------EVCGQMEAHRSFKVECLGFDDAWK 320 (724)
Q Consensus 255 ~~k~~LlVlDdv~~~~---~~~~-l~~~~~~~-~~g~s~iliTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 320 (724)
+ .-=+|++||++... .|.. +...+... ..| -++|+|++.. .....+..+-.+++++.++++-..
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~-k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG-KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT-SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC-CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 4 34478999997642 2222 11111111 234 6899998653 234455566789999999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 321 LFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 321 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
++.+.+.......+ +++..-|++.+.+..-.+
T Consensus 174 il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 174 ILQKKAKERGIELP---EEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHTT--S----HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHH
Confidence 99998865543322 556777777766544433
No 90
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.98 E-value=0.00034 Score=73.96 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=103.5
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCC-CC------------------CCcEEEEEE
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDT-PN------------------SFDFVIWIV 213 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~------------------~f~~~~wv~ 213 (724)
.+++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.+....... .. +++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 3579999999999999987654 478899999999999999998876211 00 2222 1221
Q ss_pred eCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH-HHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE
Q 048789 214 VSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK-ILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV 290 (724)
Q Consensus 214 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il 290 (724)
.+....... .+++.. .+.. -..+++-++|+|++... .....+...+...... +.+|
T Consensus 93 ~~~~~~~~~-~~~l~~-------------------~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~-~~lI 151 (355)
T TIGR02397 93 AASNNGVDD-IREILD-------------------NVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH-VVFI 151 (355)
T ss_pred ccccCCHHH-HHHHHH-------------------HHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc-eeEE
Confidence 111111110 111111 1111 01244558889998543 2333333333222233 5666
Q ss_pred EecCChH-HHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 291 FTTREIE-VCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 291 iTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
++|.+.. +...+ .....++..+++.++....+...+-......+ .+....+++.++|.|..+...
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 6664433 22221 22346788899999988888876643331121 456778899999988665543
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00021 Score=75.17 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=100.3
Q ss_pred CccccchhhHHHHHHHhhcCC----------ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQ----------MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKI 223 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 223 (724)
.+++|-+..++.+.+.+..+. .+.+.++|+.|+|||++|+.++......... + ..+..-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----C----CCCCCCHH
Confidence 357899999999998887653 4678899999999999999998865211000 0 00000011
Q ss_pred HHHHHHHcCCCc----cccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEe
Q 048789 224 QEGIAKKMGLFN----ESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFT 292 (724)
Q Consensus 224 ~~~i~~~l~~~~----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliT 292 (724)
.+.+...-.... ........++.. .+.+.+ .+++-++++|++..- .....+...+.....+ ..+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~-~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPR-TVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC-CeEEEE
Confidence 111110000000 000112233322 222222 245558888998753 2223232222222233 555555
Q ss_pred cCC-hHHHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 293 TRE-IEVCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 293 tr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
|.+ ..+...+ .....+.+.+++.++....+.+..+. + .+.+..++..++|.|..+..+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 544 4443222 23457889999999998888754321 1 344678899999999755433
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.97 E-value=0.00032 Score=66.51 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=88.8
Q ss_pred HHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCC-------------------CCCcEEEEEEeCCcCCHHHHH
Q 048789 165 GVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTP-------------------NSFDFVIWIVVSKDLQLAKIQ 224 (724)
Q Consensus 165 ~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v~~~~~~~~~~ 224 (724)
.+.+.+..+.. ..+.++|+.|+||||+|+.+........ .+.|.. ++....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~-------- 73 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEG-------- 73 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-Eecccc--------
Confidence 45566666555 6799999999999999999988862110 111111 111110
Q ss_pred HHHHHHcCCCccccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCCh-H
Q 048789 225 EGIAKKMGLFNESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREI-E 297 (724)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~-~ 297 (724)
.....++..+.+... ..+.+-++|+||+... ...+.+...+...... +.+|++|++. .
T Consensus 74 --------------~~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~~ 138 (188)
T TIGR00678 74 --------------QSIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPN-TLFILITPSPEK 138 (188)
T ss_pred --------------CcCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChHh
Confidence 011122221111111 1245668999998653 2334443333332334 5566656543 2
Q ss_pred HHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch
Q 048789 298 VCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
+...+ .....+.+.+++.++....+.+. + . . .+.+..|++.++|.|..
T Consensus 139 l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i-~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 139 LLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I-S-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred ChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C-C-----HHHHHHHHHHcCCCccc
Confidence 22211 12357899999999998888776 1 1 1 35588899999998853
No 93
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=1.5e-05 Score=83.07 Aligned_cols=193 Identities=13% Similarity=0.104 Sum_probs=106.3
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCC-CCCcE-EE---EEEeCCcCCHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTP-NSFDF-VI---WIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~-~~---wv~v~~~~~~~~~~~~i 227 (724)
.+++|.+.....+.+.+..+... .+.++|+.|+||+|+|..+....-... ..... .. -..+...+ ...+.|
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~~i 95 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVARRI 95 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHHHH
Confidence 46899999999999999887654 699999999999999999888762111 00000 00 00000000 111122
Q ss_pred HHHcCCC---------ccc---cCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcE
Q 048789 228 AKKMGLF---------NES---WQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNK 288 (724)
Q Consensus 228 ~~~l~~~---------~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ 288 (724)
...-..+ ... .....+++ ++.+.+.+ .+.+-++|+||+... .....+...+..-..+ +.
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~-~~ 173 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR-SL 173 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC-eE
Confidence 1111000 000 01122333 33344443 245678999998643 2233332222221223 55
Q ss_pred EEEecCCh-HHHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 289 IVFTTREI-EVCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 289 iliTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
+|++|.+. .+...+ .....+.+.+++.++..+++.+...... ......+++.++|.|..+..+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 66666554 332221 2345789999999999999987643211 122267899999999866544
No 94
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00011 Score=81.41 Aligned_cols=192 Identities=15% Similarity=0.142 Sum_probs=105.0
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.++||.+..+..|.+.+..+.+. .+.++|..|+||||+|+.+++... -...+. +..+......+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 35899999999999988877654 468999999999999999988872 111000 001111122222221000
Q ss_pred CCc---cccCCcCHHHHHH---HHHH-HHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHHhh-
Q 048789 233 LFN---ESWQSKGLEEKAN---KIFK-ILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVCGQ- 301 (724)
Q Consensus 233 ~~~---~~~~~~~~~~~~~---~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~~~- 301 (724)
... +.......++..+ .+.. -..+++-++|||+++.- ...+.+...+..-... .++|+ ||....+...
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~-v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC-eEEEEecCCccccchHH
Confidence 000 0000112333222 2211 12456779999999753 2333332222211122 44444 5544444322
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
......|.+.+++.++....+.+.+...... .-......|++.++|.+.-+..
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2234578999999999998888766322211 1134567789999998874443
No 95
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00012 Score=80.82 Aligned_cols=190 Identities=14% Similarity=0.158 Sum_probs=103.5
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH--
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK-- 230 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-- 230 (724)
.+++|.+..+..|.+++..+++ +.+.++|..|+||||+|+.+.+... -..... +. .+......+.|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~----pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GE----PCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CC----CCcccHHHHHHhccCc
Confidence 3689999999999999987764 4689999999999999999988762 111100 00 00000001111000
Q ss_pred ---cCCCccccCCcCHHHHHHHHHHH----HccCceEEEeccccChh--chhhccCCCCCCCCCCcEEEEecCC-hHHHh
Q 048789 231 ---MGLFNESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWELV--DLAQVGLPVSSCASSSNKIVFTTRE-IEVCG 300 (724)
Q Consensus 231 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~g~s~iliTtr~-~~v~~ 300 (724)
+.... ......+++.+.+... ..+++-++|+|++.... ....+...+..-... .++|++|.+ ..+..
T Consensus 88 ~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~-v~fILaTtd~~kL~~ 164 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFILATTDPHKVPV 164 (709)
T ss_pred cceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC-cEEEEEeCCccccch
Confidence 00000 0111222222222111 13566789999986532 222232222221223 556655543 33321
Q ss_pred h-ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 301 Q-MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 301 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
. .+....+.+.+++.++....+.+.+....... -.+....|++.++|.+.-+..
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHH
Confidence 1 12234678889999999888887765433221 244578899999998864443
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.94 E-value=0.00013 Score=71.56 Aligned_cols=169 Identities=11% Similarity=0.076 Sum_probs=92.2
Q ss_pred ccchhhHH-HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC
Q 048789 157 VGLQSTFD-GVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF 234 (724)
Q Consensus 157 vGr~~~~~-~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 234 (724)
.|...... .+.++... .....+.|+|..|+|||+||+.+++... .... ...+++..... ..+
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~~------- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LAF------- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HHH-------
Confidence 35544433 33333332 3456889999999999999999999862 1222 23344332210 000
Q ss_pred ccccCCcCHHHHHHHHHHHHccCceEEEeccccChhch--hhccCCCCCC-CCCCcEEEEecCChHHHh--------hcc
Q 048789 235 NESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVDL--AQVGLPVSSC-ASSSNKIVFTTREIEVCG--------QME 303 (724)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--~~l~~~~~~~-~~g~s~iliTtr~~~v~~--------~~~ 303 (724)
... ...-++|+||+.....+ ..+...+... ..+...+++|++...... .+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 22347889999643221 1222222111 123124666666433211 323
Q ss_pred CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHH
Q 048789 304 AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAM 362 (724)
Q Consensus 304 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 362 (724)
....+++.++++++-..++.+.+.......+ ++....+++.+.|.+..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3467899999998877777664432221222 4567788888999998877665544
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00018 Score=78.41 Aligned_cols=191 Identities=13% Similarity=0.076 Sum_probs=101.0
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.++||-+..+..+.+++..+.+. .+.++|+.|+||||+|+.+.+... -...+.. ..++.....+.|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~-------~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSA-------NPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCc-------ccCCCCHHHHHHhcCCC
Confidence 35899999999999999877655 578999999999999999998772 1111110 00011111111110000
Q ss_pred CCc---cccCCcCHHHHHHHHHH----HHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHHhhc
Q 048789 233 LFN---ESWQSKGLEEKANKIFK----ILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVCGQM 302 (724)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~~~~ 302 (724)
... +.......++..+.+.. -..++.-++|+|++... ...+.+...+..-... +++|+ ||....+...+
T Consensus 88 ~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~-~~fIlattd~~kl~~tI 166 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH-VKFILATTDHHKLPVTV 166 (509)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC-eEEEEEECChHhchHHH
Confidence 000 00011222222222111 11345668999999753 2333333222222223 55555 44444433221
Q ss_pred -cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 303 -EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 303 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
.....+++.+++.++-...+.+.+....... -.+....|++.++|.+.-+.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHH
Confidence 2245678999999887776665553322111 13346678888888876444
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00016 Score=77.06 Aligned_cols=197 Identities=11% Similarity=0.129 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE-eCCcCCHHHHHHHHHHHc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV-VSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~l 231 (724)
.+++|.+..++.+.+++..+.+. .+.++|+.|+||||+|+.+++... -....+...|.. +...+..-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 35799999899998888877665 588999999999999999998772 111111100110 001111111111111110
Q ss_pred CCCcccc---CCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEe-cCChHHHh
Q 048789 232 GLFNESW---QSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFT-TREIEVCG 300 (724)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliT-tr~~~v~~ 300 (724)
....... .....++..+ +.+.+ .+++-++|+|++... ..++.+...+...... +.+|++ ++...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~-t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH-AIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC-eEEEEEeCChHHhHH
Confidence 0000000 1112333332 22333 245568899998653 3444444444332333 555554 44444432
Q ss_pred hcc-CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 301 QME-AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 301 ~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
.+. ....+++.++++++....+...+....... -.+.+..|++.++|.+--+.
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 221 234688999999998888877664322111 14567889999999775443
No 99
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.93 E-value=1.6e-05 Score=85.42 Aligned_cols=188 Identities=28% Similarity=0.342 Sum_probs=122.9
Q ss_pred EEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccc-cCCeeecCCCCccccchHHhccccCcEeecCCccc
Q 048789 396 TLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVV-SLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYG 472 (724)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~-~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~ 472 (724)
.+.+..+.+.... ..+..+..+..|++.++. .+|..++.+. +|+.|++++|.+..+|..++.+++|+.|++++| .
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-h
Confidence 4666666542222 235566889999999999 8998888885 999999999999999999999999999999999 5
Q ss_pred ccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcc-hhhhHHHhccccccccccC
Q 048789 473 VLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNN-FHALQRLLDSCMLQYVSTP 551 (724)
Q Consensus 473 ~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~-~~~~~~~~~~~~l~~~~L~ 551 (724)
+..+|.. .+.+++|+.|++.++... ........+..|..+.+..+. ......+.... .+.
T Consensus 175 l~~l~~~-~~~~~~L~~L~ls~N~i~-------------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~-----~l~ 235 (394)
T COG4886 175 LSDLPKL-LSNLSNLNNLDLSGNKIS-------------DLPPEIELLSALEELDLSNNSIIELLSSLSNLK-----NLS 235 (394)
T ss_pred hhhhhhh-hhhhhhhhheeccCCccc-------------cCchhhhhhhhhhhhhhcCCcceecchhhhhcc-----ccc
Confidence 7888875 558999999999977532 122222334446666655552 22111111111 222
Q ss_pred cEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 552 SLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 552 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
.+.+... ..... ...+..+++|+.|++++|.++.+.. ++ .+.+|+.|++++..
T Consensus 236 ~l~l~~n-~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~--------~~~~l~~L~~s~n~ 288 (394)
T COG4886 236 GLELSNN-KLEDL-PESIGNLSNLETLDLSNNQISSISS--LG--------SLTNLRELDLSGNS 288 (394)
T ss_pred ccccCCc-eeeec-cchhccccccceecccccccccccc--cc--------ccCccCEEeccCcc
Confidence 2222111 11110 2245667778899988888776432 32 45677777776643
No 100
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=0.00027 Score=71.34 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=82.8
Q ss_pred ccccchhhHHHHHHHhh---c------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCC
Q 048789 155 TVVGLQSTFDGVWKCLM---E------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQ 219 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 219 (724)
.++|.+..+++|.++.. - .....+.++|.+|+||||+|+.++.... ..+.-...-|+.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~-~~g~~~~~~~~~v~---- 98 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILY-KLGYIKKGHLLTVT---- 98 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-HcCCCCCCceEEec----
Confidence 46787766665544321 0 1233588999999999999999988752 11111111244443
Q ss_pred HHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh-----------hchhhccCCCCCCCCCCcE
Q 048789 220 LAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL-----------VDLAQVGLPVSSCASSSNK 288 (724)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g~s~ 288 (724)
..++ ...+.+. ........+.+. ..-+|++|++... .....+...+.....+ .+
T Consensus 99 ~~~l----~~~~~g~-------~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~-~~ 163 (287)
T CHL00181 99 RDDL----VGQYIGH-------TAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD-LV 163 (287)
T ss_pred HHHH----HHHHhcc-------chHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC-EE
Confidence 1122 2221111 111112222221 2348999998642 1122232333333334 67
Q ss_pred EEEecCChHHHhhc--------cCccceeeccCChHHHHHHHHHHhCCC
Q 048789 289 IVFTTREIEVCGQM--------EAHRSFKVECLGFDDAWKLFEEKVGRD 329 (724)
Q Consensus 289 iliTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~lf~~~~~~~ 329 (724)
||.++....+...+ .....+..++++.++-.+++...+...
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77777654432211 123468899999999999988887543
No 101
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=8.8e-05 Score=77.69 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=72.4
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.++++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||.++...+..+++..+.-. +.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 3568888899999888874 3478889999999999999999988 445678889999999988877776433100 00
Q ss_pred CccccCCcCHHHHHHHHHHHH--ccCceEEEeccccC
Q 048789 234 FNESWQSKGLEEKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
.-...... ..+.+.... .++++++|+|++..
T Consensus 251 -gy~~~~G~---f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 251 -GFRRKDGI---FYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred -CeEecCch---HHHHHHHHHhcccCCcEEEEehhhc
Confidence 00000001 112222222 24689999999965
No 102
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.92 E-value=0.00022 Score=71.99 Aligned_cols=154 Identities=9% Similarity=0.042 Sum_probs=82.4
Q ss_pred ccccchhhHHHHHHHhh---c------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCC
Q 048789 155 TVVGLQSTFDGVWKCLM---E------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQ 219 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 219 (724)
.++|.+..+++|.++.. - ....-+.++|++|+||||+|+.++..... ........++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 46787776666654321 0 01236889999999999999888877621 12221122444442
Q ss_pred HHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh-----------hchhhccCCCCCCCCCCcE
Q 048789 220 LAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL-----------VDLAQVGLPVSSCASSSNK 288 (724)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g~s~ 288 (724)
.++ +..+.+. ........+.+ . ..-+|+||++... .....+...+.....+ .+
T Consensus 99 -~~l----~~~~~g~-------~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~-~~ 162 (284)
T TIGR02880 99 -DDL----VGQYIGH-------TAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDD-LV 162 (284)
T ss_pred -HHH----hHhhccc-------chHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCC-EE
Confidence 122 2222111 11112222222 2 3368999998632 1122333333333334 67
Q ss_pred EEEecCChHHHhhcc--------CccceeeccCChHHHHHHHHHHhCC
Q 048789 289 IVFTTREIEVCGQME--------AHRSFKVECLGFDDAWKLFEEKVGR 328 (724)
Q Consensus 289 iliTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (724)
||.++........+. ....+.+++++.+|-..++...+-.
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 777765443322111 1346889999999999998887754
No 103
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.91 E-value=0.00014 Score=72.92 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=79.4
Q ss_pred ccccchhhHHHHHHH---hh------c------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCC
Q 048789 155 TVVGLQSTFDGVWKC---LM------E------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQ 219 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~---L~------~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 219 (724)
.++|.+..+++|.+. +. . .....+.++|++|+||||+|+.+++..... +......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 478887777666433 21 0 234578899999999999999998875211 11111122333221
Q ss_pred HHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh----------hchhhccCCCCCCCCCCcEE
Q 048789 220 LAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL----------VDLAQVGLPVSSCASSSNKI 289 (724)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~g~s~i 289 (724)
++.. .. ...........+.+ . ...+|++|++... ...+.+...+...... ..+
T Consensus 84 --~l~~----~~-------~g~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~-~~v 146 (261)
T TIGR02881 84 --DLVG----EY-------IGHTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE-FVL 146 (261)
T ss_pred --Hhhh----hh-------ccchHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC-EEE
Confidence 1111 11 01111111222222 1 2348899999742 1223333333222222 345
Q ss_pred EEecCChHH----------HhhccCccceeeccCChHHHHHHHHHHhCCC
Q 048789 290 VFTTREIEV----------CGQMEAHRSFKVECLGFDDAWKLFEEKVGRD 329 (724)
Q Consensus 290 liTtr~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 329 (724)
++++...+. ...+ ...+.+++++.++-.+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHHc
Confidence 555544332 1121 2457889999999999998877543
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00012 Score=79.75 Aligned_cols=194 Identities=13% Similarity=0.121 Sum_probs=104.0
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++... -.. |... ..+......+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 3579999999999999877554 4788999999999999999998872 111 1110 01111112222211110
Q ss_pred CCcccc---CCcCHHHHHHH---HHHH-HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHHhh-
Q 048789 233 LFNESW---QSKGLEEKANK---IFKI-LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVCGQ- 301 (724)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~---l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~~~- 301 (724)
...... .....++.... +... ..+++-++|+|++... ..+..+...+...... ..+|+ |+....+...
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~-tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH-VVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCc-EEEEEECCChHhhhHHH
Confidence 000000 01122222221 1110 1234446999998652 3344443332221223 44444 5444444322
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc-hHHHHH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL-ALITVG 359 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 359 (724)
......+++.+++.++....+...+.......+ .+.+..+++.++|.+. |+..+-
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 223457899999999998888876643321111 3456788899999665 433333
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00031 Score=77.73 Aligned_cols=196 Identities=13% Similarity=0.155 Sum_probs=106.1
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCC-CCCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTP-NSFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
+++||-+..+..|.+++..+.. ..+.++|..|+||||+|+.+.+...... ........ ..+......+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 3579988888889898887765 5679999999999999999987762100 00000000 0111112222221100
Q ss_pred CCCc---cccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHHh-
Q 048789 232 GLFN---ESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVCG- 300 (724)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~~- 300 (724)
.... +.......++..+.+... ..++.-++|||+++.. ..++.+...+..-... .++|+ ||....+..
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~-~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY-LKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCC-eEEEEEECCchhhhHH
Confidence 0000 000112233333222211 1234558899999753 3344444333322223 45554 544444432
Q ss_pred hccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 301 QMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 301 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
.......+++.+++.++....+.+.+....... -.+....|++.++|.+.-+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 223356789999999999888887765433221 134567888899987755443
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00018 Score=74.60 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=108.9
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCC-CCCcEEEEEEeCCcCCHHHHHHHHHHH-
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTP-NSFDFVIWIVVSKDLQLAKIQEGIAKK- 230 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~- 230 (724)
..++|.+.....+...+..+.. ..+.|+|+.|+||||+|+.+........ ..+... .....+......+.|...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4589999999999999987664 4699999999999999999998873210 001111 001111111223333222
Q ss_pred ------cCCCccc-----cCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEe
Q 048789 231 ------MGLFNES-----WQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFT 292 (724)
Q Consensus 231 ------l~~~~~~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliT 292 (724)
+..+.+. ......++. ..+.+.+ .+++-++|+|++..- ...+.+...+..-..+..-|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 1110000 011223433 2344443 346678999999753 22222222221111220345555
Q ss_pred cCChHHHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 293 TREIEVCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 293 tr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
++...+.... .....+++.+++.++...++.+.... . . -..+....+++.++|.|..+..+
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5544442222 12357899999999999999874321 1 1 11345678999999999866544
No 107
>PLN03150 hypothetical protein; Provisional
Probab=97.88 E-value=2.5e-05 Score=88.20 Aligned_cols=82 Identities=24% Similarity=0.301 Sum_probs=73.3
Q ss_pred CceEEEccCCC---CCchhhhccccCCeeecCCCCcc-ccchHHhccccCcEeecCCcccccccChhhhcCCCcCcEEec
Q 048789 417 SLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRM 492 (724)
Q Consensus 417 ~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l 492 (724)
.+..|+|+++. .+|..++.|.+|++|+|++|.+. .+|..++.+.+|+.|+|++|.....+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47889999988 79999999999999999999987 89999999999999999999766678876 999999999999
Q ss_pred cccCCCc
Q 048789 493 YECATVP 499 (724)
Q Consensus 493 ~~~~~~~ 499 (724)
.+|....
T Consensus 498 s~N~l~g 504 (623)
T PLN03150 498 NGNSLSG 504 (623)
T ss_pred cCCcccc
Confidence 9886543
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00037 Score=73.87 Aligned_cols=179 Identities=12% Similarity=0.186 Sum_probs=99.7
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCC-----CCCCcEEE-EEEeCCcCCHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDT-----PNSFDFVI-WIVVSKDLQLAKIQEG 226 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~-----~~~f~~~~-wv~v~~~~~~~~~~~~ 226 (724)
.+++|.+...+.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|...+ -+.........+ .+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 3579999999999999987654 588999999999999999998876210 11122111 111001111111 111
Q ss_pred HHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEec-CChHHHhh-c
Q 048789 227 IAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTT-REIEVCGQ-M 302 (724)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTt-r~~~v~~~-~ 302 (724)
+++++... -..+++-++++|++... ..++.+...+...... +.+|++| ....+... .
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~-~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAH-AIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCc-eEEEEEeCCcccCCHHHH
Confidence 12111100 01235558999998643 2244433222221223 4555544 33333221 1
Q ss_pred cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 303 EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
.....++..+++.++....+...+.......+ .+....+++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 23346889999999988888877654332222 456778888888866533
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.87 E-value=0.00015 Score=84.10 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=99.4
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCC---CCCcEEEE-EEeCCcCCHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTP---NSFDFVIW-IVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~w-v~v~~~~~~~~~~~~i~~ 229 (724)
+.++||+.++.++++.|......-+.++|.+|+||||+|+.++....... ......+| +..+.- .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------~- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------Q- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh----------h-
Confidence 35899999999999999887767778999999999999999999872110 11122232 222110 0
Q ss_pred HcCCCccccCCcCHHHHHHHHHHHH--ccCceEEEeccccChh---------chhhccCCCCCCCCCCcEEEEecCChHH
Q 048789 230 KMGLFNESWQSKGLEEKANKIFKIL--SKKKFVLLLDDIWELV---------DLAQVGLPVSSCASSSNKIVFTTREIEV 298 (724)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g~s~iliTtr~~~v 298 (724)
.... .....+.....+.+.+ .+.+.+|++|++.... +...+..+ ....|.-++|-+|...+.
T Consensus 256 --ag~~---~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 256 --AGAS---VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--ALARGELRTIAATTWAEY 328 (852)
T ss_pred --cccc---cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--HhhCCCeEEEEecCHHHH
Confidence 0000 1111222222222222 2468999999987542 11112222 223443566666665433
Q ss_pred Hhhc-------cCccceeeccCChHHHHHHHHHHhCCCCCCCC-CChHHHHHHHHHHhCCCC
Q 048789 299 CGQM-------EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTH-PDIPELAEAVARECGGLP 352 (724)
Q Consensus 299 ~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~g~P 352 (724)
...+ .....+.+++++.++..+++............ .--.+....+++.+.+..
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2111 12347899999999999997544322110000 111344556666665443
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.86 E-value=0.00072 Score=66.89 Aligned_cols=199 Identities=14% Similarity=0.174 Sum_probs=114.0
Q ss_pred ccccchhh---HHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhccCCCC---CCcEEEEEEeCCcCCHHHHHH
Q 048789 155 TVVGLQST---FDGVWKCLME---EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPN---SFDFVIWIVVSKDLQLAKIQE 225 (724)
Q Consensus 155 ~~vGr~~~---~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~---~f~~~~wv~v~~~~~~~~~~~ 225 (724)
..+|.... ++.+.+++.. ...+-+.|||.+|.|||++++.+....+.... .--.++.|.....++...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 45665432 3334444433 34567999999999999999999988732211 111477788889999999999
Q ss_pred HHHHHcCCCccccCCcCHHHHHHHHHHHHcc-CceEEEeccccChh--------chhhccCCCCCCCCCCcEEEEecCCh
Q 048789 226 GIAKKMGLFNESWQSKGLEEKANKIFKILSK-KKFVLLLDDIWELV--------DLAQVGLPVSSCASSSNKIVFTTREI 296 (724)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~--------~~~~l~~~~~~~~~g~s~iliTtr~~ 296 (724)
.|+.+++.+... ..+...+.......++. +-=+||+|++.+.- +.-+....+.+.-.- +-|.+-|+.-
T Consensus 115 ~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i-piV~vGt~~A 191 (302)
T PF05621_consen 115 AILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI-PIVGVGTREA 191 (302)
T ss_pred HHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC-CeEEeccHHH
Confidence 999999987642 33444445555555544 45589999997631 111111112111112 5566655542
Q ss_pred HHHhhcc-----CccceeeccCChH-HHHHHHHHHhCCC--CCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 297 EVCGQME-----AHRSFKVECLGFD-DAWKLFEEKVGRD--TLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 297 ~v~~~~~-----~~~~~~l~~L~~~-~~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
--+-..+ -...+.+..-..+ +...|+......- ...++-...+++..|...++|+.=.+.
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 2211111 1124445544433 3444443322111 112334457889999999999875443
No 111
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00042 Score=74.47 Aligned_cols=191 Identities=15% Similarity=0.113 Sum_probs=103.6
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.++||.+...+.+.+.+..+... .+.++|+.|+||||+|+.++..... ....+ ...+........|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC-~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC-SNGPT-------SDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC-cCCCC-------CCCccccHHHHHHhccCC
Confidence 35899998888888888777655 7999999999999999999875410 00000 000111111112211111
Q ss_pred CCcccc---CCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHHhhc
Q 048789 233 LFNESW---QSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVCGQM 302 (724)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~~~~ 302 (724)
...-.. .....++....+... ..++.-++|+|++... ...+.+...+..-... .++|+ ||....+...+
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~-v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH-VKFILATTEVKKIPVTI 163 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC-eEEEEEeCChHHHHHHH
Confidence 000000 111222222211111 1245668999998653 2333333333222233 55555 44444543322
Q ss_pred -cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 303 -EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 303 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
.....+++.+++.++....+.+.+.......+ .+....|++.++|.+..+.
T Consensus 164 ~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 164 ISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred HHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 23457889999999988888887654332221 3456788899988776443
No 112
>PF14516 AAA_35: AAA-like domain
Probab=97.86 E-value=0.0016 Score=67.54 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=119.0
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-----CCHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-----LQLAKIQEGIA 228 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i~ 228 (724)
+..|.|....+++.+.|.+. -..+.|.|+-.+|||+|...+.+... +..+ .++++++... .+..++++.++
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 34578886777777777653 35899999999999999999998872 2333 4456765432 24555555544
Q ss_pred ----HHcCCCccc-----cCCcCHHHHHHHHHHHH---ccCceEEEeccccChhc--------------hhhccCCCCCC
Q 048789 229 ----KKMGLFNES-----WQSKGLEEKANKIFKIL---SKKKFVLLLDDIWELVD--------------LAQVGLPVSSC 282 (724)
Q Consensus 229 ----~~l~~~~~~-----~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~--------------~~~l~~~~~~~ 282 (724)
++++....- ............+.+.+ .+++.+|++|+++.... |..-+...+..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 455443210 01112233344455443 25899999999975321 21111111111
Q ss_pred CCCCcEEEEecCChHH-H----hhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 283 ASSSNKIVFTTREIEV-C----GQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 283 ~~g~s~iliTtr~~~v-~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
..- +-|++.+..... . ..+.....+.+.+++.+|...|..++-.... ....+.|...++|+|..+..
T Consensus 167 ~~L-~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 167 QKL-RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred ceE-EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHH
Confidence 111 122222211111 1 1112245788999999999999887643211 22388999999999999999
Q ss_pred HHHHHhcC
Q 048789 358 VGRAMASR 365 (724)
Q Consensus 358 ~~~~l~~~ 365 (724)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99888763
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00014 Score=78.40 Aligned_cols=166 Identities=12% Similarity=0.125 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
..-+.|+|..|+|||+|++.+.+........ ..+++++ ..++...+...++... .....+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 3468999999999999999999976211111 2334443 4566667766654210 1122333333
Q ss_pred ccCceEEEeccccChh---ch-hhccCCCCCC-CCCCcEEEEecCCh---------HHHhhccCccceeeccCChHHHHH
Q 048789 255 SKKKFVLLLDDIWELV---DL-AQVGLPVSSC-ASSSNKIVFTTREI---------EVCGQMEAHRSFKVECLGFDDAWK 320 (724)
Q Consensus 255 ~~k~~LlVlDdv~~~~---~~-~~l~~~~~~~-~~g~s~iliTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 320 (724)
+ +.-+||+||+.... .+ +.+...+... ..| ..||+|+... .+...+..+-++.+++++.++-..
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~-k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEND-KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC-CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 3 34488999996532 12 2222222211 233 5688886642 234455556678899999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHH
Q 048789 321 LFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359 (724)
Q Consensus 321 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 359 (724)
++.+++-..... ..--+++...|+..++|.|..+..+.
T Consensus 283 iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 999988543211 11225678889999999988766443
No 114
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.83 E-value=5.3e-06 Score=81.58 Aligned_cols=245 Identities=19% Similarity=0.127 Sum_probs=129.9
Q ss_pred CCCCcceEEEeeccccccc----ChhhhhcCCCceEEEccCCC------CCchhh-------hccccCCeeecCCCCcc-
Q 048789 389 PVCPRLRTLFLSSNIFHRV----NSDFFQSMASLRVLKLSYSN------PLLFEI-------SKVVSLQHLDLSHSRIE- 450 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~----~~~~~~~l~~Lr~L~l~~~~------~lp~~i-------~~L~~L~~L~L~~~~i~- 450 (724)
.....+..+++++|.+... ....+.+.+.|+.-+++.-- ++|+.+ -.+++|++|+||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3456788899999875322 23345667788888887543 555543 34568888888887543
Q ss_pred ----ccchHHhccccCcEeecCCcccccccChhh-------------hcCCCcCcEEeccccCCCcccccccccCCcccc
Q 048789 451 ----RLPIEFKYLVNLKCLNLEYTYGVLKIPPKV-------------ISNLKILQTLRMYECATVPQARDSILFGDCRVL 513 (724)
Q Consensus 451 ----~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~-------------i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 513 (724)
.|-.-+.+++.|++|+|.+|. +...-... +..-++|+.+....|..-. .+....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen--------~ga~~~ 177 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN--------GGATAL 177 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc--------ccHHHH
Confidence 233345667788888888773 22211111 2333455555554332111 001112
Q ss_pred hHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccC
Q 048789 514 VEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNG 593 (724)
Q Consensus 514 ~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 593 (724)
...++..+.|+.+.++.+.+.. .+. .+-...+..+++|+.|+|.+|.++...-..+
T Consensus 178 A~~~~~~~~leevr~~qN~I~~-----------------------eG~-~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRP-----------------------EGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred HHHHHhccccceEEEecccccC-----------------------chh-HHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 2234444555555554443321 011 1111256778899999998876653211111
Q ss_pred CccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceecccccccccc----ccCCCCCCCCcc
Q 048789 594 GEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKT----IHSKALPFPCLK 669 (724)
Q Consensus 594 ~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~----~~~~~~~~p~L~ 669 (724)
+. -| ..+|+|+.|.+.+|.--.. ....+ +.....++|+|+.|.+.++.-=.. +.......|.|+
T Consensus 234 ak--aL--~s~~~L~El~l~dcll~~~-----Ga~a~---~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 234 AK--AL--SSWPHLRELNLGDCLLENE-----GAIAF---VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred HH--Hh--cccchheeecccccccccc-----cHHHH---HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 10 00 2357888999988842110 00000 001123489999999887432111 112334478899
Q ss_pred EEeecCCCC
Q 048789 670 EMSVDGCPL 678 (724)
Q Consensus 670 ~L~i~~C~~ 678 (724)
.|.+++|.-
T Consensus 302 kLnLngN~l 310 (382)
T KOG1909|consen 302 KLNLNGNRL 310 (382)
T ss_pred HhcCCcccc
Confidence 998888743
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.81 E-value=0.00025 Score=75.29 Aligned_cols=197 Identities=19% Similarity=0.218 Sum_probs=106.3
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc---
Confidence 3578899988888876631 234578899999999999999999986 2333 222111
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc----------------hhhccCCCCC--C
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD----------------LAQVGLPVSS--C 282 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~~--~ 282 (724)
.+ .... ...........+.....+.+.+++||+++.... +..+...+.. .
T Consensus 252 -eL----~~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 -EL----IQKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -hh----hhhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 11 1111 111111122222233345788999999753210 0011111111 1
Q ss_pred CCCCcEEEEecCChHHHhhc-----cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch---
Q 048789 283 ASSSNKIVFTTREIEVCGQM-----EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA--- 354 (724)
Q Consensus 283 ~~g~s~iliTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla--- 354 (724)
..+ .+||.||...+..... ..+..+.+...+.++..++|..++.........++. .++..+.|.-=|
T Consensus 320 ~~~-V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~----~la~~t~g~sgAdI~ 394 (438)
T PTZ00361 320 RGD-VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLE----EFIMAKDELSGADIK 394 (438)
T ss_pred cCC-eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHH----HHHHhcCCCCHHHHH
Confidence 223 6788888765543221 224578889999999999999887544323333343 344445443322
Q ss_pred -HHHHHHHHh--cC---CChhHHHHHHHHH
Q 048789 355 -LITVGRAMA--SR---KTPREWEHAIEVL 378 (724)
Q Consensus 355 -i~~~~~~l~--~~---~~~~~w~~~~~~l 378 (724)
+..-|++++ .. -+.+++..+.+..
T Consensus 395 ~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 395 AICTEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 222233332 21 3556666665553
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00052 Score=78.83 Aligned_cols=188 Identities=12% Similarity=0.091 Sum_probs=102.3
Q ss_pred ccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
+++|.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+.+.+... ..... ..+....-.+.|...-..
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~-------~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTS-------TPCGECDSCVALAPGGPG 87 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCC-------CCCcccHHHHHHHcCCCC
Confidence 5899999999999999886654 57899999999999999999887211 11000 000000001111100000
Q ss_pred Cc-----cccCCcCHHHHHHHHHHH-----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE-EecCChHHHh
Q 048789 234 FN-----ESWQSKGLEEKANKIFKI-----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV-FTTREIEVCG 300 (724)
Q Consensus 234 ~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il-iTtr~~~v~~ 300 (724)
.. +......+++..+ +++. ..++.-++|||+++.. ...+.|...+..-... +.+| +|+....+..
T Consensus 88 ~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~-~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH-LKFIFATTEPDKVIG 165 (824)
T ss_pred CCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC-eEEEEEeCChhhhhH
Confidence 00 0001112333322 2221 2345568899998753 3334443333322233 4444 4554444443
Q ss_pred hc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 301 QM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 301 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
.+ .....|++..++.++..+++.+.+....... -......|++.++|.+..+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 22 2345788999999998888877653322111 1344577888899877433
No 117
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00084 Score=73.83 Aligned_cols=195 Identities=14% Similarity=0.179 Sum_probs=107.4
Q ss_pred ccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 155 TVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
+++|-+..+..|.+.+..+. ...+.++|+.|+||||+|+.+.+... -....+ ...++.-...+.|......
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~-------~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPT-------GEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCC-------CCCCcccHHHHHHhcCCCC
Confidence 57898888888888887765 46788999999999999999998872 111000 0011111112222211100
Q ss_pred Ccccc---CCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCC-hHHHhhc
Q 048789 234 FNESW---QSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTRE-IEVCGQM 302 (724)
Q Consensus 234 ~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~-~~v~~~~ 302 (724)
..... .....++.. .+.+.+ .+++-++|+|++... ...+.+...+..-... ..+|++|.. ..+...+
T Consensus 89 Dv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~-~ifILaTt~~~kll~TI 166 (624)
T PRK14959 89 DVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR-VTFVLATTEPHKFPVTI 166 (624)
T ss_pred ceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC-EEEEEecCChhhhhHHH
Confidence 00000 011222222 222222 356678999999653 3334443333221223 455554444 4443222
Q ss_pred -cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC-chHHHHHHHH
Q 048789 303 -EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP-LALITVGRAM 362 (724)
Q Consensus 303 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~l 362 (724)
.....+++.+++.++....+...+....... -.+....|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2234788999999999988887665433112 1455778888999865 5666655444
No 118
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.8e-05 Score=53.35 Aligned_cols=40 Identities=40% Similarity=0.545 Sum_probs=29.8
Q ss_pred ccCCeeecCCCCccccchHHhccccCcEeecCCcccccccC
Q 048789 437 VSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIP 477 (724)
Q Consensus 437 ~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp 477 (724)
++|++|++++|.|+.+|..+++|++|++|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46888888888888888778888888888888884 55554
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00065 Score=74.71 Aligned_cols=190 Identities=11% Similarity=0.089 Sum_probs=100.1
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|-+..+..+.+++..+... .+.++|+.|+||||+|+.+..... -..... ...+....-...+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~-------~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-CETGVT-------ATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 35799999999999998876654 568999999999999999988762 111000 000000000011100000
Q ss_pred CC---ccccCCcCHHHHHHHHHHH----HccCceEEEeccccChh--chhhccCCCCCCCCCCcEEEEec-CChHHHhh-
Q 048789 233 LF---NESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWELV--DLAQVGLPVSSCASSSNKIVFTT-REIEVCGQ- 301 (724)
Q Consensus 233 ~~---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~g~s~iliTt-r~~~v~~~- 301 (724)
.. .+.......++..+.+... ..+++-++|+|++.... ..+.+...+..-... ..+|++| ..+.+...
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~-~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFILATTDPQKIPVTV 166 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC-EEEEEEeCChhhCchhH
Confidence 00 0000011222222222111 13566699999997532 233333222222223 5555544 43333211
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
......+++.+++.++....+.+.+...... --......|++.++|.+.-+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 1123578899999999888877766432211 12345677888899977533
No 120
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.74 E-value=0.00021 Score=71.61 Aligned_cols=164 Identities=17% Similarity=0.194 Sum_probs=103.4
Q ss_pred CCccccchhhHHHHHHHhhcCC---ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLMEEQ---MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 229 (724)
.+.+.+|+.++..+..++.+.. +..|-|+|-.|.|||.+.+++.+.. . ...+|+++-..+....++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHH
Confidence 4578999999999999987643 4456899999999999999999986 2 24589999999999999999999
Q ss_pred HcCC-CccccC-CcCHHH---HHHHHHH--HHc--cCceEEEeccccChhchhhc--------cCCCCCCCCCCcEEEEe
Q 048789 230 KMGL-FNESWQ-SKGLEE---KANKIFK--ILS--KKKFVLLLDDIWELVDLAQV--------GLPVSSCASSSNKIVFT 292 (724)
Q Consensus 230 ~l~~-~~~~~~-~~~~~~---~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~l--------~~~~~~~~~g~s~iliT 292 (724)
+.+. +.+... ..+.+. ....+.+ ... ++.++||||+++...+.+.+ ...++. +. ..|+..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~-i~iils 155 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE--PT-IVIILS 155 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--Cc-eEEEEe
Confidence 9852 221111 111122 2233333 222 45899999999765443322 111111 12 333332
Q ss_pred cCC-hHH-HhhccCcc--ceeeccCChHHHHHHHHHH
Q 048789 293 TRE-IEV-CGQMEAHR--SFKVECLGFDDAWKLFEEK 325 (724)
Q Consensus 293 tr~-~~v-~~~~~~~~--~~~l~~L~~~~~~~lf~~~ 325 (724)
.-. +.. ...++... ++....-+.++...++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222 222 22344443 4456677888888887654
No 121
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00066 Score=75.44 Aligned_cols=195 Identities=11% Similarity=0.113 Sum_probs=103.4
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE-eCCcCCHHHHHHHHHHHc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV-VSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~l 231 (724)
.+++|.+..+..+.+.+..+.+ ..+.++|+.|+||||+|+.+.+... -....+.-.|.. +...+......+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 3589999999999898887665 4588999999999999999998872 211111001110 001111111111111100
Q ss_pred CCCcccc---CCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEE-EEecCChHHHhh
Q 048789 232 GLFNESW---QSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKI-VFTTREIEVCGQ 301 (724)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~i-liTtr~~~v~~~ 301 (724)
..+.... .....++..+.+... ..+++-++|+|+++.- ...+.+...+..-... +.+ ++|++...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~-tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPH-AIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCC-eEEEEEeCChhhhhHH
Confidence 0000000 112233333322221 2345567899998653 2233333333222222 444 445544444332
Q ss_pred -ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 302 -MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 302 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
......+++.+++.++....+.+.+....... -.+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHH
Confidence 23356789999999998877776554322111 14557888999999654
No 122
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.74 E-value=0.0008 Score=71.04 Aligned_cols=171 Identities=15% Similarity=0.210 Sum_probs=95.4
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 4578998888888776531 245689999999999999999999986 2332 11111
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh------------c----hhhccCCCCC--C
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV------------D----LAQVGLPVSS--C 282 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~--~ 282 (724)
..+ .... .......+.+.+.......+.++++|+++... . +..+...+.. .
T Consensus 213 s~l----~~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEF----VQKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHH----HHHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111 1111 01111222222233334578999999976420 0 1111111111 1
Q ss_pred CCCCcEEEEecCChHHHhh--c---cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 283 ASSSNKIVFTTREIEVCGQ--M---EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 283 ~~g~s~iliTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
..+ ..||.||...+.... . .-+..+.+...+.++...+|..+..........++ .++++.+.|.-
T Consensus 282 ~~~-v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 282 TTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCC-EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 223 678888876544221 1 22456788888888888888877654332222333 44555665554
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00063 Score=75.46 Aligned_cols=194 Identities=13% Similarity=0.106 Sum_probs=106.2
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCc--EEEEEEeCCcCCHHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFD--FVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.+++|.+..++.+.+.+..++.. .+.++|+.|+||||+|+.+++... -..... ...+- .+....-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccc----cCcccHHHHHHhcC
Confidence 35899999999999998877644 689999999999999999998762 111000 00000 00111111222211
Q ss_pred cCCCccc---cCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE-EecCChHHH
Q 048789 231 MGLFNES---WQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV-FTTREIEVC 299 (724)
Q Consensus 231 l~~~~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il-iTtr~~~v~ 299 (724)
-....-. ......++..+.+ +.+ .+++-++|+|++... ...+.+...+..-... +.+| +|+....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIi-e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~-~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREII-ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-VKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHHHHHH-HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC-eEEEEEeCChhhhh
Confidence 1110000 0112233332222 212 245557899998653 2333333333222233 5554 455444443
Q ss_pred hhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 300 GQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
..+ .....+++..++.++....+.+.+........ .+....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 222 23457889999999998888887643331221 35577888999998865543
No 124
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=1e-05 Score=79.64 Aligned_cols=223 Identities=18% Similarity=0.172 Sum_probs=129.9
Q ss_pred hhhcCCCceEEEccCCC-------CCchhhhccccCCeeecCCC---C-ccccchHHhc-------cccCcEeecCCccc
Q 048789 411 FFQSMASLRVLKLSYSN-------PLLFEISKVVSLQHLDLSHS---R-IERLPIEFKY-------LVNLKCLNLEYTYG 472 (724)
Q Consensus 411 ~~~~l~~Lr~L~l~~~~-------~lp~~i~~L~~L~~L~L~~~---~-i~~Lp~~i~~-------L~~L~~L~l~~~~~ 472 (724)
....+..+..++|+++. .+-+.+.+.+.|+..+++.- + ..++|+.+.. ..+|++|||+.|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 35667889999999998 34455667788999888853 2 2366765443 35899999999854
Q ss_pred ccccCh---hhhcCCCcCcEEeccccCCCcccccccccCCcccch------HHhhcCCCCCeEEEEEcchhhhHHHhccc
Q 048789 473 VLKIPP---KVISNLKILQTLRMYECATVPQARDSILFGDCRVLV------EELLCLEHLSVFTITLNNFHALQRLLDSC 543 (724)
Q Consensus 473 ~~~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~------~~L~~L~~L~~L~i~~~~~~~~~~~~~~~ 543 (724)
-...++ ..|..+..|++|++.+|..-...... ....+ ....+-..|+++.+.-+.....+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~-----l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~---- 175 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR-----LGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT---- 175 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH-----HHHHHHHHHHHhccCCCcceEEEEeeccccccccHH----
Confidence 333333 23678899999999977643321111 11111 1122223344333332222211100
Q ss_pred cccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhc
Q 048789 544 MLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIIS 623 (724)
Q Consensus 544 ~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~ 623 (724)
.--..+..++.|+.+.+..|++. |..+.-+ ...-..+|+|+.|+|.+...-..--.
T Consensus 176 --------------------~~A~~~~~~~~leevr~~qN~I~---~eG~~al-~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 176 --------------------ALAEAFQSHPTLEEVRLSQNGIR---PEGVTAL-AEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred --------------------HHHHHHHhccccceEEEeccccc---CchhHHH-HHHHHhCCcceeeecccchhhhHHHH
Confidence 00014667899999999998876 3222100 00013579999999998754322100
Q ss_pred cCCCCCcccccccCCCcccccceeccccccccccccC------CCCCCCCccEEeecCC
Q 048789 624 SEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHS------KALPFPCLKEMSVDGC 676 (724)
Q Consensus 624 ~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~------~~~~~p~L~~L~i~~C 676 (724)
.+......+|+|+.|++.+| .++.=.. -...+|+|+.|.+.+|
T Consensus 232 ---------~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 232 ---------ALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred ---------HHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc
Confidence 11124556899999999997 3332110 1234899999997765
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00091 Score=73.77 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=104.4
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+...+.|.+++..+.+. .+.++|+.|+||||+|+.++..... ....+ +. .++.-...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~~----pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---AT----PCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---CC----cccccHHHHHhhcccC
Confidence 35899999999999999887655 4789999999999999999987621 11000 00 0011111111111000
Q ss_pred CCc-----cccCCcCHHHH---HHHHHHH-HccCceEEEeccccCh--hchhhccCCCCCCCCCCcE-EEEecCChHHHh
Q 048789 233 LFN-----ESWQSKGLEEK---ANKIFKI-LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNK-IVFTTREIEVCG 300 (724)
Q Consensus 233 ~~~-----~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~-iliTtr~~~v~~ 300 (724)
... +.......++. .+.+... ..+++-++|+|++... ...+.+...+..-... .. |++||....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~-~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH-LIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC-eEEEEEeCChHhhHH
Confidence 000 00011122222 2222111 1345668899998642 3333333333222223 44 445555555433
Q ss_pred hc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc-hHHHHHHH
Q 048789 301 QM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL-ALITVGRA 361 (724)
Q Consensus 301 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~~ 361 (724)
.+ .....++..+++.++..+.+.+.+.......+ .+....|++.++|.+. ++..+-.+
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22 23457889999999988888776543321111 3456778888888774 44444333
No 126
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00031 Score=75.61 Aligned_cols=157 Identities=22% Similarity=0.200 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC-cEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF-DFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
..-+.|+|.+|+|||+|++.+++... +... ..++|++. .++...+...+... ..+ .+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cHH----HHHHH
Confidence 34699999999999999999999872 2222 24566653 45566666555321 122 23333
Q ss_pred HccCceEEEeccccChh---ch-hhccCCCCCC-CCCCcEEEEecC-ChH--------HHhhccCccceeeccCChHHHH
Q 048789 254 LSKKKFVLLLDDIWELV---DL-AQVGLPVSSC-ASSSNKIVFTTR-EIE--------VCGQMEAHRSFKVECLGFDDAW 319 (724)
Q Consensus 254 l~~k~~LlVlDdv~~~~---~~-~~l~~~~~~~-~~g~s~iliTtr-~~~--------v~~~~~~~~~~~l~~L~~~~~~ 319 (724)
+..+.-+|++||+.... .+ +.+...+... ..| ..||+||. ... +...+..+..+.+++.+.+.-.
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 33445689999997431 11 1221111111 123 56888875 322 1223344557889999999999
Q ss_pred HHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch
Q 048789 320 KLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 320 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
.++.+.+.......+ +++...|++.+.|.--.
T Consensus 270 ~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 270 KIARKMLEIEHGELP---EEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHHHHhcCCCCC---HHHHHHHHhccccCHHH
Confidence 999888754332222 45677788877765443
No 127
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3.7e-06 Score=80.69 Aligned_cols=81 Identities=26% Similarity=0.251 Sum_probs=44.2
Q ss_pred ceEEEccCCC----CCchhhhccccCCeeecCCCCcc-ccchHHhccccCcEeecCCcccccccChh-hhcCCCcCcEEe
Q 048789 418 LRVLKLSYSN----PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNLKCLNLEYTYGVLKIPPK-VISNLKILQTLR 491 (724)
Q Consensus 418 Lr~L~l~~~~----~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~-~i~~l~~L~~L~ 491 (724)
|++|||+.+. .+..-+..+..|+.|.|.|+.+. .+...|.+-.+|+.|+|+.|..+...... ++..++.|+.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5556666554 23333455566666666665544 33344555666666666666544433221 245666666666
Q ss_pred ccccCCC
Q 048789 492 MYECATV 498 (724)
Q Consensus 492 l~~~~~~ 498 (724)
+++|...
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 6666543
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.69 E-value=0.00043 Score=67.43 Aligned_cols=182 Identities=13% Similarity=0.172 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEE-EEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIW-IVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w-v~v~~~~~~~~~~~~i~~~l~ 232 (724)
++++|.+..+..+.+.+......+...+|++|.|||+-|+..+... ...+.|.+++- .++|....+.-+-.
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~------- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVRE------- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhh-------
Confidence 4578999899999998888788999999999999999999999887 44455655432 23333322110000
Q ss_pred CCccccCCcCHHHHHHHHHHHH--ccCc-eEEEeccccC--hhchhhccCCCCCCCCCCcE-EEEecCChHHHhhc-cCc
Q 048789 233 LFNESWQSKGLEEKANKIFKIL--SKKK-FVLLLDDIWE--LVDLAQVGLPVSSCASSSNK-IVFTTREIEVCGQM-EAH 305 (724)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~--~~~~~~l~~~~~~~~~g~s~-iliTtr~~~v~~~~-~~~ 305 (724)
...+...+........ ..++ -++|||+.+. ...|..++....+.... ++ |+||+--..+...+ ...
T Consensus 108 ------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~-trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 108 ------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRT-TRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccc-eEEEEEcCChhhCChHHHhhH
Confidence 0111111111100000 1123 3788999875 35677776555554444 55 44555443332222 123
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 306 RSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
..|..++|.+++...-+...+...+...+ .+..+.|++.++|--.
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLR 225 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHH
Confidence 46788999998888777777655443333 4557888888888544
No 129
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00079 Score=64.93 Aligned_cols=168 Identities=19% Similarity=0.221 Sum_probs=97.1
Q ss_pred CccccchhhHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME-----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
.+|+|.++-++++.=.+.. +.+-.|.++|++|.||||||..+++.. . ..+.. ..+....-..=+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-g--vn~k~----tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-G--VNLKI----TSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-c--CCeEe----cccccccChhhHHHHH
Confidence 3589998888877655543 467799999999999999999999988 2 22211 1111111111111222
Q ss_pred HHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh---------chh---------------hccCCCCCCCC
Q 048789 229 KKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV---------DLA---------------QVGLPVSSCAS 284 (724)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~---------------~l~~~~~~~~~ 284 (724)
..+. +.=++.+|++.... ..+ .+...+|..
T Consensus 99 t~Le------------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF-- 152 (332)
T COG2255 99 TNLE------------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF-- 152 (332)
T ss_pred hcCC------------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe--
Confidence 2221 22245556654311 011 111122211
Q ss_pred CCcEEEEecCChHHHhhccC--ccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHH
Q 048789 285 SSNKIVFTTREIEVCGQMEA--HRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359 (724)
Q Consensus 285 g~s~iliTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 359 (724)
.-|=-|||.-.+...+.. ....+++..+.+|-.++..+.+..-..+.. ++-+.+|++...|-|.-+.-+-
T Consensus 153 --TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 153 --TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred --eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHH
Confidence 234458887655433322 346688889999999999988854332333 4458899999999997554443
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0013 Score=71.01 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=99.4
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH--
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK-- 230 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-- 230 (724)
.+++|.+..+..+.+++..+.. ..+.++|+.|+||||+|+.+.+.........+.. .+......+.+...
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~-------~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQE-------PCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCC-------CCcccHHHHHHhcCCC
Confidence 4689999999999999987665 5688999999999999999988762110000000 00000000000000
Q ss_pred ---cCCCccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEec-CChHHH
Q 048789 231 ---MGLFNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTT-REIEVC 299 (724)
Q Consensus 231 ---l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTt-r~~~v~ 299 (724)
+..... .....++.. .+.+.+ .+++-++|+|++... ...+.+...+..-... ..+|++| +...+.
T Consensus 90 ~d~~~i~g~--~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~-~~~Il~t~~~~kl~ 165 (451)
T PRK06305 90 LDVLEIDGA--SHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH-VKFFLATTEIHKIP 165 (451)
T ss_pred CceEEeecc--ccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC-ceEEEEeCChHhcc
Confidence 000000 011112221 111211 256678899998643 2233333333222223 5555555 333332
Q ss_pred hhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch
Q 048789 300 GQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
..+ .....+++.++++++....+.+.+....... -.+.+..|++.++|.+.-
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRD 218 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 221 2345688999999998888877654322111 144577888999886643
No 131
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=2.6e-06 Score=85.60 Aligned_cols=236 Identities=21% Similarity=0.207 Sum_probs=125.3
Q ss_pred CceEEEccCCC-----CCchhhhccccCCeeecCCC-Ccc--ccchHHhccccCcEeecCCcccccccCh-hhhcCCCcC
Q 048789 417 SLRVLKLSYSN-----PLLFEISKVVSLQHLDLSHS-RIE--RLPIEFKYLVNLKCLNLEYTYGVLKIPP-KVISNLKIL 487 (724)
Q Consensus 417 ~Lr~L~l~~~~-----~lp~~i~~L~~L~~L~L~~~-~i~--~Lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~i~~l~~L 487 (724)
.|+.|.+.++. .+-....+++++..|++.+| +++ .+-+--..+.+|++|++..|..+....- .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35666666666 22333456677777777776 333 2222234566777777777654443221 124467778
Q ss_pred cEEeccccCCCcccccccccCCcccchH-HhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCcccc
Q 048789 488 QTLRMYECATVPQARDSILFGDCRVLVE-ELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGV 566 (724)
Q Consensus 488 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~ 566 (724)
.+|++++|..... ..++ -.+.+++++.+...+..-..++.+...... ..-+..+++..|+.+++.+.
T Consensus 219 ~~lNlSwc~qi~~-----------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~-~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 219 KYLNLSWCPQISG-----------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAY-CLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred HHhhhccCchhhc-----------CcchHHhccchhhhhhhhcccccccHHHHHHHhcc-ChHhhccchhhhccccchHH
Confidence 8888887764432 0111 111222233222221111112222211110 00234445556665555543
Q ss_pred ccc-ccccccceEEeec-CCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCccccc
Q 048789 567 FSL-ASLRHLQTLHLTY-NDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARL 644 (724)
Q Consensus 567 ~~l-~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L 644 (724)
..+ ..+..|+.|..++ +.+.......++ ...++|+.|.+..|..+...- ...-....+.|
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-------~~~~~L~~l~l~~c~~fsd~~-----------ft~l~rn~~~L 348 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALG-------QHCHNLQVLELSGCQQFSDRG-----------FTMLGRNCPHL 348 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHh-------cCCCceEEEeccccchhhhhh-----------hhhhhcCChhh
Confidence 222 2466788888877 344332222222 345899999999998765541 11233467899
Q ss_pred ceeccccccccccccC--CCCCCCCccEEeecCCCCCCCC
Q 048789 645 ERLILEELKNLKTIHS--KALPFPCLKEMSVDGCPLLKKL 682 (724)
Q Consensus 645 ~~L~l~~~~~L~~~~~--~~~~~p~L~~L~i~~C~~L~~l 682 (724)
+.+.+..|.....-.. -....|.|+.+.++.|...+..
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 9999988765554322 3345788888888888766554
No 132
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00046 Score=77.28 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+..++.|..++..+.. ..+.++|..|+||||+|+.++.... ...... ....++.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 3689999999999888887654 4678999999999999999998762 111000 0011122223333332221
Q ss_pred CCc---cccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEec-CChHHHhh
Q 048789 233 LFN---ESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTT-REIEVCGQ 301 (724)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTt-r~~~v~~~ 301 (724)
... ........++.. .+.+.+ .+++-++|+|++... ...+.+...+...... +.+|++| ....+...
T Consensus 89 ~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~-tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-AIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC-eEEEEEeCChhhhhHH
Confidence 110 000112222222 222222 245668999998643 3344443333222233 5555554 33333322
Q ss_pred c-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 302 M-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 302 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
+ .....+.+..++.++....+...+........ .+....|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 22346778889999888888777654331211 456778899999988655433
No 133
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=3.4e-05 Score=86.78 Aligned_cols=135 Identities=21% Similarity=0.169 Sum_probs=79.7
Q ss_pred CcceEEEeeccc-c-cccChhhhhcCCCceEEEccCCC----CCchhhhccccCCeeecCCCCccccchHHhccccCcEe
Q 048789 392 PRLRTLFLSSNI-F-HRVNSDFFQSMASLRVLKLSYSN----PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCL 465 (724)
Q Consensus 392 ~~Lr~L~l~~~~-~-~~~~~~~~~~l~~Lr~L~l~~~~----~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 465 (724)
.+|+.|++++.. + ...+...-..+|.|+.|.+++-. .+-.-..++++|+.||+|+|+++.+ .++++|+||++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 467777777765 2 22223333457788888887765 2223345678888888888888877 678888888888
Q ss_pred ecCCcccccccC-hhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 466 NLEYTYGVLKIP-PKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 466 ~l~~~~~~~~lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
.+.+-.. ..-. -..+-.|++|++||++.......- .+ ....++--..|++|+.|+++...+.
T Consensus 201 ~mrnLe~-e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~i----i~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEF-ESYQDLIDLFNLKKLRVLDISRDKNNDDT--KI----IEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCC-CchhhHHHHhcccCCCeeeccccccccch--HH----HHHHHHhcccCccccEEecCCcchh
Confidence 7765422 2211 112667888888888754432210 00 0001111123778888888766553
No 134
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.66 E-value=0.00042 Score=74.36 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=92.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
...+.|+|..|+|||+|++.+++... ....-..+++++ ..++...+...+... ... .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~------~~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVS------SEKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEE------HHHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 34689999999999999999999872 111112445554 334444555444321 122 233333
Q ss_pred ccCceEEEeccccChhc---h-hhccCCCCCC-CCCCcEEEEecCCh-H--------HHhhccCccceeeccCChHHHHH
Q 048789 255 SKKKFVLLLDDIWELVD---L-AQVGLPVSSC-ASSSNKIVFTTREI-E--------VCGQMEAHRSFKVECLGFDDAWK 320 (724)
Q Consensus 255 ~~k~~LlVlDdv~~~~~---~-~~l~~~~~~~-~~g~s~iliTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~ 320 (724)
+. .-+|||||+..... + +.+...+... ..+ ..+|+|+... . +...+.....+.+++.+.++-..
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENG-KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 32 34889999975321 1 1121111111 123 5677777642 1 22333344578899999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 321 LFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 321 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
++.+.+.......+ +++...|++.+.|..-.+
T Consensus 276 il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 276 ILQKKAEEEGLELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 99988865432222 566788888888776543
No 135
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.0023 Score=66.12 Aligned_cols=173 Identities=14% Similarity=0.198 Sum_probs=107.2
Q ss_pred CCccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
+..++||+.+++.+-+++.. ...+.+-|.|.+|.|||.+...++.+....... -.+++++...-....++...|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 45689999999999988764 467789999999999999999999987321122 2446666655556777777777
Q ss_pred HHcCCCccccCCcCHHHHHHHHHHHHccC--ceEEEeccccChhc--hhhc--cCCCCCCCCCCcEEEEecC--ChHHHh
Q 048789 229 KKMGLFNESWQSKGLEEKANKIFKILSKK--KFVLLLDDIWELVD--LAQV--GLPVSSCASSSNKIVFTTR--EIEVCG 300 (724)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~--~~~l--~~~~~~~~~g~s~iliTtr--~~~v~~ 300 (724)
..+-.... ......+....+.++..+. .+++|+|+++.... -..+ ...++. -++ +|+++.-- .-+..+
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~-sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPN-SRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCc-ceeeeeeehhhhhHHH
Confidence 76621110 1112256666777777553 58999999865311 0111 111222 233 55443221 111111
Q ss_pred ----hc-----cCccceeeccCChHHHHHHHHHHhCCCC
Q 048789 301 ----QM-----EAHRSFKVECLGFDDAWKLFEEKVGRDT 330 (724)
Q Consensus 301 ----~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 330 (724)
.+ .....+...|.+.++-.+++..+.-...
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 11 1234567789999999999999876443
No 136
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.00037 Score=74.81 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILS 255 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (724)
.-+.|+|+.|+|||+|++.+++.... . ...+++++ ...+...+...+... . ...+++.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~-~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--S-GGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--c-CCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 56889999999999999999998721 1 22344443 344555555554321 1 122333333
Q ss_pred cCceEEEeccccChhc----hhhccCCCCCC-CCCCcEEEEecCCh---------HHHhhccCccceeeccCChHHHHHH
Q 048789 256 KKKFVLLLDDIWELVD----LAQVGLPVSSC-ASSSNKIVFTTREI---------EVCGQMEAHRSFKVECLGFDDAWKL 321 (724)
Q Consensus 256 ~k~~LlVlDdv~~~~~----~~~l~~~~~~~-~~g~s~iliTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 321 (724)
+.-+|++||+..... -+.+...+... ..| ..||+||... .+...+..+..+++.+++.++-..+
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 345888999865321 11222211111 123 5677777542 2233444556889999999999999
Q ss_pred HHHHhCCCCCCCCCChHHHHHHHHHHhCC
Q 048789 322 FEEKVGRDTLDTHPDIPELAEAVARECGG 350 (724)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~c~g 350 (724)
+.+++.......+ +++...|+..+.+
T Consensus 280 L~~k~~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 280 LERKAEALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCC
Confidence 9988754332222 4455556665554
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.65 E-value=0.00039 Score=80.20 Aligned_cols=156 Identities=15% Similarity=0.232 Sum_probs=89.9
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCC--CC-CcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTP--NS-FDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~-f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
+.++||+.+++++++.|......-+.++|++|+|||++|+.++....... .. .+..+|. + +...+. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~----a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL----AG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----hh
Confidence 35899999999999999877666788999999999999999999873211 11 1233332 1 111111 10
Q ss_pred cCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh----------chhhccCCCCCCCCCCcEEEEecCChHHH
Q 048789 231 MGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV----------DLAQVGLPVSSCASSSNKIVFTTREIEVC 299 (724)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~g~s~iliTtr~~~v~ 299 (724)
.. .....++....+.+.+ ..++.+|++|++.... +..++..+ ....|.-++|-+|...+..
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~--~l~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKP--ALSSGKLRCIGSTTYEEYK 324 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHH--HHhCCCeEEEEecCHHHHH
Confidence 00 1112333333344333 3468899999987431 11122212 1123323455555543221
Q ss_pred hhc-------cCccceeeccCChHHHHHHHHHHh
Q 048789 300 GQM-------EAHRSFKVECLGFDDAWKLFEEKV 326 (724)
Q Consensus 300 ~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 326 (724)
..+ .....+.+++++.++..+++....
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111 112468899999999999998654
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.61 E-value=0.00038 Score=67.06 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILS 255 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (724)
+.+.|+|++|+|||+|++.+++.. . . .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~--~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-N--A-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-C--C-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 569999999999999999987765 1 1 1111 0000 0 0 011
Q ss_pred cCceEEEeccccChhchhhccCCCCCC-CCCCcEEEEecCChH-------HHhhccCccceeeccCChHHHHHHHHHHhC
Q 048789 256 KKKFVLLLDDIWELVDLAQVGLPVSSC-ASSSNKIVFTTREIE-------VCGQMEAHRSFKVECLGFDDAWKLFEEKVG 327 (724)
Q Consensus 256 ~k~~LlVlDdv~~~~~~~~l~~~~~~~-~~g~s~iliTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (724)
+..-++++||++...+ ..+...+... ..| ..+|+|++... ....+.....++++++++++-..++.+.+.
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g-~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNIINEKQ-KYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHHHhcC-CEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1234788999963221 1111111111 235 67888887533 234445556899999999998888887765
Q ss_pred CCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 328 RDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
......+ +++..-|++.+.|.--.+.
T Consensus 162 ~~~l~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 162 ISSVTIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HcCCCCC---HHHHHHHHHHccCCHHHHH
Confidence 3221222 5667788888877655443
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.002 Score=70.03 Aligned_cols=192 Identities=13% Similarity=0.157 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCCC-CCCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDTP-NSFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
.+++|-+...+.+...+..+... +..++|+.|+||||+|+.+.+...... ..+. .+....-...+....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---------pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---------PCDTCIQCQSALENR 84 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---------CCcccHHHHHHhhcC
Confidence 35899998899999998877655 668999999999999999888762100 0100 000000001111000
Q ss_pred CCCc---cccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCCh-HHHhh
Q 048789 232 GLFN---ESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREI-EVCGQ 301 (724)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~-~v~~~ 301 (724)
.... +.......++..+.+... ..+++-++|+|++... ...+.+...+..-... +++|++|.+. .+...
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~-t~FIL~ttd~~kL~~t 163 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY-VKFILATTDPLKLPAT 163 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc-eEEEEEECChhhCchH
Confidence 0000 000011233333333221 1145568899998653 2233332222222223 5555555442 22211
Q ss_pred -ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 302 -MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 302 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
......+++.+++.++....+.+.+....... -.+.+..|++.++|.+.-+..+
T Consensus 164 I~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 164 ILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 12245788999999998888877664333111 1456778999999988654433
No 140
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0018 Score=72.48 Aligned_cols=184 Identities=12% Similarity=0.108 Sum_probs=100.6
Q ss_pred CccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+.....+.+++..++ .+.+.++|+.|+||||+|+.++........... ..+..-.... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~----------~~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL----------LEPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC----------CCchhHHHHh---hc
Confidence 357999999999999998765 456789999999999999999887621100000 0000000000 00
Q ss_pred CCcc-----ccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcE-EEEecCChHHH
Q 048789 233 LFNE-----SWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNK-IVFTTREIEVC 299 (724)
Q Consensus 233 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~-iliTtr~~~v~ 299 (724)
...+ .......++. +.+.+.+ .+++-++|+|++... ..+..+...+..-... .. |++|++...+.
T Consensus 85 ~~~Dvieidaasn~~vd~I-ReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~-tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEI-RELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKH-VIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCc-eEEEEEcCChhhhh
Confidence 0000 0001122222 2222222 356668999998643 3343333222221222 44 44555555553
Q ss_pred hh-ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 300 GQ-MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
.. ......+++.+++.++....+...+........ .+.+..|++.++|.+.-+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 32 223457889999999988888775543221111 344677888888876533
No 141
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0019 Score=72.33 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=102.0
Q ss_pred CccccchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhccCC--------------------CCCCcEEEEE
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKFLDT--------------------PNSFDFVIWI 212 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 212 (724)
++++|.+...+.+..++..+... .+.++|+.|+||||+|+.+....... ..+|+.. .+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-EL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-Ee
Confidence 36899999999999999887654 58899999999999999988876200 1122211 11
Q ss_pred EeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCC
Q 048789 213 VVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSS 286 (724)
Q Consensus 213 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~ 286 (724)
..+.. ...++....+.+. ..+++=++|+|++..- ...+.+...+..-...
T Consensus 96 d~~~~-----------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~- 151 (614)
T PRK14971 96 DAASN-----------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY- 151 (614)
T ss_pred ccccc-----------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC-
Confidence 11111 1122222222111 1234557899998653 3344443333322223
Q ss_pred cEEE-EecCChHHHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 287 NKIV-FTTREIEVCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 287 s~il-iTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
+.+| +|+....+...+ .....++..+++.++....+.+.+........ .+.+..|+..++|..--+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5544 455544443322 23457889999999998888876644332211 345678888998866543
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.58 E-value=0.00049 Score=74.87 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=92.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
..-+.|+|..|+|||+|++.+++... ....-..+++++. .++...+...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRNN-------TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHcC-------cH----HHHHHHH
Confidence 35689999999999999999999872 1111223455543 33444444444211 11 2233333
Q ss_pred ccCceEEEeccccChhc---h-hhccCCCCCC-CCCCcEEEEecCChH---------HHhhccCccceeeccCChHHHHH
Q 048789 255 SKKKFVLLLDDIWELVD---L-AQVGLPVSSC-ASSSNKIVFTTREIE---------VCGQMEAHRSFKVECLGFDDAWK 320 (724)
Q Consensus 255 ~~k~~LlVlDdv~~~~~---~-~~l~~~~~~~-~~g~s~iliTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~ 320 (724)
+ +.-+|||||+..... + +.+...+... ..| ..+++|+.... +...+.....+++++.+.++-..
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 3 344899999964311 1 1221111111 123 45777776431 23344455678999999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 321 LFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 321 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
++.+.+.......+ +++...|++.+.|..-.+
T Consensus 288 il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 288 ILKKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 99998764322222 456778888888766543
No 143
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.57 E-value=0.00065 Score=73.31 Aligned_cols=161 Identities=13% Similarity=0.165 Sum_probs=89.2
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCC---CCCcEEEEEEeCCc
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTP---NSFDFVIWIVVSKD 217 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~ 217 (724)
.++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++... .. ..+....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch
Confidence 3467899988888876531 2356799999999999999999999872 11 01223444444332
Q ss_pred CCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh---------c-----hhhccCCCCCC
Q 048789 218 LQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV---------D-----LAQVGLPVSSC 282 (724)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~-----~~~l~~~~~~~ 282 (724)
+ ++...... .......+.+..++.. .+++++++||+++... + ...+...+...
T Consensus 261 ----e----Ll~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 ----E----LLNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ----h----hcccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1 11111000 0011111222222221 3478999999997421 1 11222222211
Q ss_pred C--CCCcEEEEecCChHHHhh-----ccCccceeeccCChHHHHHHHHHHhCC
Q 048789 283 A--SSSNKIVFTTREIEVCGQ-----MEAHRSFKVECLGFDDAWKLFEEKVGR 328 (724)
Q Consensus 283 ~--~g~s~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (724)
. .+ ..||.||...+.... ..-+..+.+...+.++..++|..++..
T Consensus 329 ~~~~~-ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 329 ESLDN-VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCCc-eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 22 455666655543221 122446899999999999999988753
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.54 E-value=0.0004 Score=81.12 Aligned_cols=155 Identities=17% Similarity=0.249 Sum_probs=89.0
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCC---CcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNS---FDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
+.++||+++++++++.|......-+.++|++|+|||++|+.++......... -+..+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 3579999999999999987666677899999999999999999886311111 1234442 1 2222211
Q ss_pred cCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh---------chhhccCCCCCCCCCCcEEEEecCChHHHh
Q 048789 231 MGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV---------DLAQVGLPVSSCASSSNKIVFTTREIEVCG 300 (724)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g~s~iliTtr~~~v~~ 300 (724)
+.. .....++....+.+.+ ..++.+|++|++.... +..++..+. -..|.-++|-+|...+...
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~--l~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA--LARGELQCIGATTLDEYRK 321 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH--HhCCCcEEEEeCCHHHHHH
Confidence 111 1112333333333333 3568999999996421 112222221 1223245666666554422
Q ss_pred hc-------cCccceeeccCChHHHHHHHHHH
Q 048789 301 QM-------EAHRSFKVECLGFDDAWKLFEEK 325 (724)
Q Consensus 301 ~~-------~~~~~~~l~~L~~~~~~~lf~~~ 325 (724)
.. .....+.+...+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 11 12235678888888887777643
No 145
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00028 Score=73.20 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=25.2
Q ss_pred CCCceEEEccCCC--CCchhhhccccCCeeecCCC-CccccchHHhccccCcEeecCCcccccccC
Q 048789 415 MASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHS-RIERLPIEFKYLVNLKCLNLEYTYGVLKIP 477 (724)
Q Consensus 415 l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~-~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp 477 (724)
+.+++.|++++|. .+|. -..+|+.|.+++| .+..+|..+. .+|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 4455555555554 3441 1123555555443 3444443331 345555555443333333
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=4e-05 Score=86.24 Aligned_cols=105 Identities=25% Similarity=0.248 Sum_probs=79.6
Q ss_pred CCCceEEEccCCC----CCchhhhc-cccCCeeecCCCCcc--ccchHHhccccCcEeecCCcccccccChhhhcCCCcC
Q 048789 415 MASLRVLKLSYSN----PLLFEISK-VVSLQHLDLSHSRIE--RLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKIL 487 (724)
Q Consensus 415 l~~Lr~L~l~~~~----~lp~~i~~-L~~L~~L~L~~~~i~--~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L 487 (724)
-.+|++||+++.. .=|..++. ||+|+.|.+++-.+. .+-.-..+++||..||+++++ +..+ .+ |+.|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G-IS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG-ISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HH-HhccccH
Confidence 3579999999977 23334554 899999999986543 444556789999999999995 6666 34 9999999
Q ss_pred cEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcch
Q 048789 488 QTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNF 533 (724)
Q Consensus 488 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 533 (724)
+.|.+..-... ....+.+|-.|++|+.|+++....
T Consensus 198 q~L~mrnLe~e-----------~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 198 QVLSMRNLEFE-----------SYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHhccCCCCC-----------chhhHHHHhcccCCCeeecccccc
Confidence 99999843321 345677899999999999985443
No 147
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0033 Score=68.32 Aligned_cols=188 Identities=11% Similarity=0.102 Sum_probs=100.1
Q ss_pred ccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCC-C-CcEEEEEEeCCcCCHHHHHH----HH
Q 048789 155 TVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPN-S-FDFVIWIVVSKDLQLAKIQE----GI 227 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~-f~~~~wv~v~~~~~~~~~~~----~i 227 (724)
+++|.+.....+.+++..+.. +.+.++|+.|+||||+|+.++........ . ..| ....+-..+.. ++
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc------~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC------GKCENCVEIDKGSFPDL 90 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC------CccHHHHHHhcCCCCcE
Confidence 578999999999999987654 45678999999999999999887621000 0 000 00000000000 00
Q ss_pred HHHcCCCccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHH
Q 048789 228 AKKMGLFNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVC 299 (724)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~ 299 (724)
. .+... .....++. +.+.+.+ .+++-++|+|+++.. ...+.+...+...... ..+|+ ||+...+.
T Consensus 91 ~-eidaa----s~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~-~v~Il~tt~~~kl~ 163 (486)
T PRK14953 91 I-EIDAA----SNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR-TIFILCTTEYDKIP 163 (486)
T ss_pred E-EEeCc----cCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC-eEEEEEECCHHHHH
Confidence 0 00000 01112211 1222222 346669999998643 2333333233222223 44444 44444433
Q ss_pred hhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 300 GQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
..+ .....+.+.+++.++....+.+.+....... -.+....|++.++|.+..+...
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 221 2234688899999998888887664333222 1345677888899977644433
No 148
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.51 E-value=0.00071 Score=70.19 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=39.5
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4679999999999999887654 567779999999999999999875
No 149
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0043 Score=62.02 Aligned_cols=194 Identities=18% Similarity=0.216 Sum_probs=113.4
Q ss_pred ccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 155 TVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++=|-++.+++|.+.+.- +.++=|.+||++|.|||-||++|+++- ...| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----
Confidence 355788888888776531 467789999999999999999999986 3333 332222
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHcc-CceEEEeccccChh------------c----hhhc---cCCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSK-KKFVLLLDDIWELV------------D----LAQV---GLPVSS 281 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~------------~----~~~l---~~~~~~ 281 (724)
++.++.-+. -..++..+.+..+. .++++.+|+++... + .-++ ...|..
T Consensus 220 ----ElVqKYiGE--------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ----ELVQKYIGE--------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ----HHHHHHhcc--------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 222221111 12345555555544 68899999987421 0 1111 122222
Q ss_pred CCCCCcEEEEecCChHHHh-----hccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC----
Q 048789 282 CASSSNKIVFTTREIEVCG-----QMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP---- 352 (724)
Q Consensus 282 ~~~g~s~iliTtr~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P---- 352 (724)
. .. -|||..|...++.+ ...-+..+++..-+.+.-.++|.-+...-.....-+++ .+++.|.|.-
T Consensus 288 ~-~n-vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdl 361 (406)
T COG1222 288 R-GN-VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADL 361 (406)
T ss_pred C-CC-eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHH
Confidence 1 22 78999888766633 22235567777666667778888887655434444554 4455555543
Q ss_pred chHHHHHHHHhcC-----CChhHHHHHHHHH
Q 048789 353 LALITVGRAMASR-----KTPREWEHAIEVL 378 (724)
Q Consensus 353 lai~~~~~~l~~~-----~~~~~w~~~~~~l 378 (724)
.|+.+=|++++-+ .+.+.+..+.+..
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 3444556666433 2445566555443
No 150
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0058 Score=58.40 Aligned_cols=182 Identities=18% Similarity=0.209 Sum_probs=105.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe-CCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHH
Q 048789 172 EEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV-SKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKI 250 (724)
Q Consensus 172 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 250 (724)
.++.+++.++|.-|+|||++.+.+.... .. +.++-|.+ ....+...+...|+..+............++..+.+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~-~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL-NE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc-CC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 3566799999999999999999665554 21 11222333 344577888999998887743222222344445555
Q ss_pred HHHH-ccCc-eEEEeccccCh--hchhhccCCCC---CCCCCCcEEEEecCCh-------HHHhhcc-Cccc-eeeccCC
Q 048789 251 FKIL-SKKK-FVLLLDDIWEL--VDLAQVGLPVS---SCASSSNKIVFTTREI-------EVCGQME-AHRS-FKVECLG 314 (724)
Q Consensus 251 ~~~l-~~k~-~LlVlDdv~~~--~~~~~l~~~~~---~~~~g~s~iliTtr~~-------~v~~~~~-~~~~-~~l~~L~ 314 (724)
.... ++++ ..+++||.... ...+.++.... +.... -+|+..-..+ .+....+ .... |.+.|++
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 5544 5677 89999998653 22222211110 11110 1122221110 1111111 1123 8999999
Q ss_pred hHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHH
Q 048789 315 FDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359 (724)
Q Consensus 315 ~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 359 (724)
.++...++..+..+.....+---.+....|.....|.|.++..++
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 999999998887655322222224556778899999999988665
No 151
>PRK10536 hypothetical protein; Provisional
Probab=97.49 E-value=0.002 Score=62.47 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=41.2
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEE
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWI 212 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 212 (724)
.+.++......++.++.+. .+|.+.|..|+|||+||..+..+... ...|+.++-+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~ 110 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVT 110 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEe
Confidence 3577888888888888764 49999999999999999998886411 2345554443
No 152
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00011 Score=50.41 Aligned_cols=38 Identities=32% Similarity=0.418 Sum_probs=29.3
Q ss_pred CCceEEEccCCC--CCchhhhccccCCeeecCCCCccccc
Q 048789 416 ASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLP 453 (724)
Q Consensus 416 ~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp 453 (724)
++|++|+++++. .+|..+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 367888888888 77777888888888888888887665
No 153
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00092 Score=76.22 Aligned_cols=155 Identities=16% Similarity=0.273 Sum_probs=89.9
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCC---CcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNS---FDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
.++||++++.++++.|......-+.++|.+|+|||++|+.++......... .++.+|.. ++..+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 489999999999999987655666789999999999999999875221111 23444421 12111 10
Q ss_pred CCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccCh----------hchhhccCCCCCCCCCCcEEEEecCChHHHh
Q 048789 232 GLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWEL----------VDLAQVGLPVSSCASSSNKIVFTTREIEVCG 300 (724)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~ 300 (724)
+.. .....+.....+.+.+ +.++.+|++|++... .+...+..++. ..|.-++|-+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHH
Confidence 000 1112233333333333 346789999999742 11222222222 233245555555444321
Q ss_pred hc-------cCccceeeccCChHHHHHHHHHHh
Q 048789 301 QM-------EAHRSFKVECLGFDDAWKLFEEKV 326 (724)
Q Consensus 301 ~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 326 (724)
.+ .-...+.+++.+.++...++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 122468899999999999988654
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45 E-value=0.0012 Score=77.12 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=86.9
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCC--C-CCcE-EEEEEeCCcCCHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTP--N-SFDF-VIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~-~f~~-~~wv~v~~~~~~~~~~~~i~~ 229 (724)
+.++||+.++.++++.|.......+.++|.+|+|||++|+.+........ . .... ++++..+. +..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a---- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA---- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh----
Confidence 35899999999999999887767788999999999999999999872110 0 0122 22222221 110
Q ss_pred HcCCCccccCCcCHHHHHHHHHHHH--ccCceEEEeccccChh---------chhhccCCCCCCCCCCcEEEEecCChHH
Q 048789 230 KMGLFNESWQSKGLEEKANKIFKIL--SKKKFVLLLDDIWELV---------DLAQVGLPVSSCASSSNKIVFTTREIEV 298 (724)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g~s~iliTtr~~~v 298 (724)
+.. .....+.....+.+.+ .+.+.+|++|++.... +..++..+. ...|.-++|-+|...+.
T Consensus 248 --g~~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~--l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 --GAK----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA--LARGELHCVGATTLDEY 319 (857)
T ss_pred --ccc----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch--hhcCCCeEEEcCCCHHH
Confidence 000 1112222233332222 2578999999997542 122222222 22332566666655543
Q ss_pred Hhhc-------cCccceeeccCChHHHHHHHHHHh
Q 048789 299 CGQM-------EAHRSFKVECLGFDDAWKLFEEKV 326 (724)
Q Consensus 299 ~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 326 (724)
...+ .....+.+..-+.++...++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1111 111245566668888888876544
No 155
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.44 E-value=0.0076 Score=70.08 Aligned_cols=46 Identities=28% Similarity=0.331 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+++|.+..++.|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998887642 234589999999999999999999987
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.41 E-value=0.0012 Score=77.34 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=88.4
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCC----CcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNS----FDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.++||+.++.++++.|.......+.++|.+|+|||++|+.++..... ... ....+|.- ++..+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~a----- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALIA----- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHhh-----
Confidence 48999999999999998776667779999999999999999988621 110 12222221 1111110
Q ss_pred cCCCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccChh---------chhhccCCCCCCCCCCcEEEEecCChHHH
Q 048789 231 MGLFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWELV---------DLAQVGLPVSSCASSSNKIVFTTREIEVC 299 (724)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g~s~iliTtr~~~v~ 299 (724)
+.. .....+.....+.+.+. +++.+|++|++.... +..++..+. ...|.-++|-+|...+..
T Consensus 243 -~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 -GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGELHCIGATTLDEYR 315 (852)
T ss_pred -cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCceEEEEeCcHHHHH
Confidence 000 01122333333333332 468999999997532 112222222 233324555555544432
Q ss_pred hhc-------cCccceeeccCChHHHHHHHHHHh
Q 048789 300 GQM-------EAHRSFKVECLGFDDAWKLFEEKV 326 (724)
Q Consensus 300 ~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 326 (724)
..+ .....+.+...+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 111 122357788889999999887654
No 157
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.40 E-value=0.0044 Score=68.28 Aligned_cols=171 Identities=17% Similarity=0.188 Sum_probs=92.3
Q ss_pred CccccchhhHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLM---E---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++ ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~----~~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSIS----GS 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eecc----HH
Confidence 357888777666554432 1 234468899999999999999999876 2222 2222 11
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc----------------hhhccCCCCC--CC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD----------------LAQVGLPVSS--CA 283 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~ 283 (724)
++.. .. .......+...+.......+++|++||++.... ...+...+.. ..
T Consensus 123 ~~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 11 111222233333334455779999999864210 1111111111 12
Q ss_pred CCCcEEEEecCChHHH-----hhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 284 SSSNKIVFTTREIEVC-----GQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 284 ~g~s~iliTtr~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
.+ -.||.||...... ....-+..+.+...+.++-.++|..++.........+ ...+++.+.|.-
T Consensus 192 ~~-v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 192 TG-VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGFS 260 (495)
T ss_pred CC-eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCCC
Confidence 23 4566666654321 1112345678888888888888888775433221122 346777777744
No 158
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.0046 Score=68.40 Aligned_cols=191 Identities=12% Similarity=0.112 Sum_probs=103.1
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|-+..+..+..++..+.. +.+.++|+.|+||||+|+.+++... -...... ..+....+- +.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccchHH----HHHHcCCC
Confidence 3589999999999999987654 4688999999999999999998872 1111000 000111111 11111000
Q ss_pred CCc---cccCCcCHHHHHHHH---HH-HHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEec-CChHHHhhc
Q 048789 233 LFN---ESWQSKGLEEKANKI---FK-ILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTT-REIEVCGQM 302 (724)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTt-r~~~v~~~~ 302 (724)
... +.......++..+.. .. -..+++-++|+|++..- ..++.+...+..-... ..+|++| ....+...+
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~-~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPY-IVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCC-EEEEEecCChHHhHHHH
Confidence 000 000112233332222 11 11356668999998653 3344444333332233 5555544 434443222
Q ss_pred -cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 303 -EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 303 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
.....++..+++.++-...+.+.+....... -.+....|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2234688899999988888877664332111 24556778888888775443
No 159
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0066 Score=67.98 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=104.8
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
..++|.+.....|.+++..+.. ..+.++|..|+||||+|+.++.... -.. .+.. ....+...+..+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~-~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-CLN-SDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-CCC-cCCC----CCCCCcccHHHHHHhcCCC
Confidence 3578999999999998887653 6788999999999999999999872 111 1100 0011122223333332221
Q ss_pred CCc---cccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE-EecCChHHHhhc
Q 048789 233 LFN---ESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV-FTTREIEVCGQM 302 (724)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il-iTtr~~~v~~~~ 302 (724)
... ........++..+.+... ..+++-++|+|++..- ...+.+...+..-... ..+| +|+....+...+
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~-tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPR-VVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcC-eEEEEEeCChhhhhHHH
Confidence 110 000112233332222211 1245568899998753 3344443333221222 4444 454433333222
Q ss_pred -cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 303 -EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 303 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
.....+++..++.++....+.+.+........ .+....|++.++|.+..+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22346777888888888777766543221111 345778888999987654433
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.002 Score=70.60 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILS 255 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (724)
..+.|+|..|+|||.|++.+++.... ...-..+++++ ..++...+...+.. ... ..+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yit------aeef~~el~~al~~-------~~~----~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVS------SEEFTNEFINSIRD-------GKG----DSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEee------HHHHHHHHHHHHHh-------ccH----HHHHHHhh
Confidence 45899999999999999999998721 11112345554 34444455444321 111 22333333
Q ss_pred cCceEEEeccccChh---chh-hccCCCCCC-CCCCcEEEEecCCh---------HHHhhccCccceeeccCChHHHHHH
Q 048789 256 KKKFVLLLDDIWELV---DLA-QVGLPVSSC-ASSSNKIVFTTREI---------EVCGQMEAHRSFKVECLGFDDAWKL 321 (724)
Q Consensus 256 ~k~~LlVlDdv~~~~---~~~-~l~~~~~~~-~~g~s~iliTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 321 (724)
. -=+|||||+.... .|. .+...+... ..+ ..||+||+.. .+...+...-.+.+++.+.+.-..+
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~g-k~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNAN-KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcC-CCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 2 3478999996531 121 122112111 223 5688888752 2344555667889999999999999
Q ss_pred HHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 322 FEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
+.+++.......+ +++..-|++.+.+..
T Consensus 455 L~kka~~r~l~l~---~eVi~yLa~r~~rnv 482 (617)
T PRK14086 455 LRKKAVQEQLNAP---PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHhcCCCCC---HHHHHHHHHhccCCH
Confidence 9988765432222 456677777665543
No 161
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=0.00012 Score=67.56 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEE
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIW 211 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w 211 (724)
+.|.|+|++|+||||+|+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999998322356777775
No 162
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=5.7e-05 Score=72.74 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=52.0
Q ss_pred hcCCCceEEEccCCC-----CCchhhhccccCCeeecCCCCcc----ccchHHhccccCcEeecCCcccccccChhhhcC
Q 048789 413 QSMASLRVLKLSYSN-----PLLFEISKVVSLQHLDLSHSRIE----RLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISN 483 (724)
Q Consensus 413 ~~l~~Lr~L~l~~~~-----~lp~~i~~L~~L~~L~L~~~~i~----~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~ 483 (724)
..+.+++.|||.+|. ++-.-+.+|++|++|+|+.|.+. .+| --+.+|++|-|+++..-..-....+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 456778888888887 23333456888888888887543 444 235678888888774322222233567
Q ss_pred CCcCcEEeccccC
Q 048789 484 LKILQTLRMYECA 496 (724)
Q Consensus 484 l~~L~~L~l~~~~ 496 (724)
+++++.|+++.|+
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 7778888777553
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0034 Score=66.85 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=61.2
Q ss_pred ccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHH
Q 048789 155 TVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAK 222 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 222 (724)
++=|.+....++.+++.. ...+-|.++|++|.|||.||++++++. .-.| +.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch-----
Confidence 466888888888776642 246679999999999999999999987 2222 222221
Q ss_pred HHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccC
Q 048789 223 IQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
.|+..+ ...+.+.+.+.+.+....-+|++++|+++.
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233222 233444444455555567899999999975
No 164
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.34 E-value=0.00028 Score=71.87 Aligned_cols=178 Identities=22% Similarity=0.292 Sum_probs=116.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC-cEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF-DFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
..+.+.++|.|||||||++-.+.. . ...| +.+.++......+...+.-.....++... .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 467899999999999999999988 4 3445 45666666666677777766666676643 223344556667
Q ss_pred HHccCceEEEeccccChhch-hhccCCCCCCCCCCcEEEEecCChHHHhhccCccceeeccCChH-HHHHHHHHHhCCCC
Q 048789 253 ILSKKKFVLLLDDIWELVDL-AQVGLPVSSCASSSNKIVFTTREIEVCGQMEAHRSFKVECLGFD-DAWKLFEEKVGRDT 330 (724)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~~~-~~l~~~~~~~~~g~s~iliTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~ 330 (724)
.+.+++.++|+||-.+..+- ..+.-.+..+... -.|+.|+|.... +.......+.+|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~-~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPR-LAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchh-hhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 77889999999997553221 1111111111222 567778776432 233445667777754 78888887764221
Q ss_pred --CCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhc
Q 048789 331 --LDTHPDIPELAEAVARECGGLPLALITVGRAMAS 364 (724)
Q Consensus 331 --~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~ 364 (724)
+.....-.....+|-++..|.|++|...++..+.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s 195 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS 195 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh
Confidence 1222333566888999999999999988877765
No 165
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0041 Score=67.45 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=64.6
Q ss_pred CccccchhhHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
.+.+|+++-+++|++++.- .+-++++.+|++|||||++|+.++.... +.+|. ++|+.-.|..+|-..=
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFfR----fSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFFR----FSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceEE----EeccccccHHhhcccc
Confidence 4569999999999998853 3567999999999999999999999882 34443 4556655555442211
Q ss_pred HHHcCCCccccCCcCHHHHHHHHHHHHc---cCceEEEeccccC
Q 048789 228 AKKMGLFNESWQSKGLEEKANKIFKILS---KKKFVLLLDDIWE 268 (724)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~ 268 (724)
- .-...+-.++-++|+ -..-|+.||+|+.
T Consensus 485 R------------TYVGAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 485 R------------TYVGAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred e------------eeeccCChHHHHHHHhhCCCCceEEeehhhh
Confidence 1 111222233444443 3556888999864
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.34 E-value=0.0008 Score=60.25 Aligned_cols=88 Identities=25% Similarity=0.143 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILS 255 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (724)
..+.|+|++|+||||+++.++.... .....++++..+........... ........ ...........+.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999872 22133455544433221111111 00011110 12222333334444444
Q ss_pred cC-ceEEEeccccChh
Q 048789 256 KK-KFVLLLDDIWELV 270 (724)
Q Consensus 256 ~k-~~LlVlDdv~~~~ 270 (724)
.. ..++++|++....
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 43 4899999998753
No 167
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.32 E-value=0.0012 Score=63.17 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHH----hhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKC----LMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~----L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.++|.+..++.|++- +......-+.+||..|+|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 4689999999988764 334566788899999999999999999988
No 168
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=4.7e-05 Score=82.02 Aligned_cols=105 Identities=27% Similarity=0.368 Sum_probs=66.2
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
...+..|..|++.+|.+..+... +..+.+|++|+++++. .-...+..|..|+.|++++|.|..++ .+..+.+|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 45567777777777776555332 5667777777777777 33345666666777777777776654 344577777777
Q ss_pred cCCcccccccCh-hhhcCCCcCcEEeccccC
Q 048789 467 LEYTYGVLKIPP-KVISNLKILQTLRMYECA 496 (724)
Q Consensus 467 l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~ 496 (724)
+++|. +..++. . ...+.+|+.+.+.+|.
T Consensus 169 l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 169 LSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred CCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 77773 444443 1 2566666666666553
No 169
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0044 Score=69.16 Aligned_cols=192 Identities=11% Similarity=0.130 Sum_probs=100.1
Q ss_pred CccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+.....+.+++..+.+ +.+.++|+.|+||||+|+.+.+.... ....+ ...+......+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 3689999889999999887765 46789999999999999999888621 11100 000011111111111000
Q ss_pred CCc---cccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE-EecCChHHHhh
Q 048789 233 LFN---ESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV-FTTREIEVCGQ 301 (724)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il-iTtr~~~v~~~ 301 (724)
... +.......++. +.+.+.+ .+++-++|+|++... ...+.+...+..-... ..+| +||....+...
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~-~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH-VKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC-eEEEEEeCChhhhhHH
Confidence 000 00001122222 2222222 234558899998653 2233333222221223 4444 55555555432
Q ss_pred c-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc-hHHHH
Q 048789 302 M-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL-ALITV 358 (724)
Q Consensus 302 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 358 (724)
+ .....++..+++.++....+...+.......+ .+....|++.++|..- ++..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 23456788899988887777665543221111 3456778888888653 44444
No 170
>CHL00176 ftsH cell division protein; Validated
Probab=97.29 E-value=0.0064 Score=68.19 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=94.8
Q ss_pred CccccchhhHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCL---ME---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.++.++++.+.+ .. ...+-|.++|++|+|||++|+.+++.. ... ++.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 35788877666655443 32 124579999999999999999999876 222 222221 1
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh----------------chhhccCCCCC--CC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV----------------DLAQVGLPVSS--CA 283 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~ 283 (724)
++.... ...........+.+.....+++|++||++... .+..+...+.. ..
T Consensus 251 ~f~~~~-----------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEMF-----------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHh-----------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111100 01112223333444556788999999996421 11222211111 12
Q ss_pred CCCcEEEEecCChHHHhh-----ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCC
Q 048789 284 SSSNKIVFTTREIEVCGQ-----MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGL 351 (724)
Q Consensus 284 ~g~s~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 351 (724)
.+ -.||.||...+.... ..-+..+.+...+.++-.+++..++...... .......+++.+.|.
T Consensus 320 ~~-ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KG-VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred CC-eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 33 556667766443221 1224567888888899999998887643211 122346677777773
No 171
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.012 Score=64.33 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=87.5
Q ss_pred CccccchhhHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
.+.+|.++.+++|++.|.- -.-+++++||++|+|||+|++.++... ...| +-++++.-.|..+|-..=
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcccc
Confidence 4569999999999998853 245799999999999999999999987 3333 224455544444332111
Q ss_pred HHHcCCCccccCCcCHHHHHHHHHHHH---ccCceEEEeccccCh---------hchhhccCCCCC----------CCCC
Q 048789 228 AKKMGLFNESWQSKGLEEKANKIFKIL---SKKKFVLLLDDIWEL---------VDLAQVGLPVSS----------CASS 285 (724)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~---------~~~~~l~~~~~~----------~~~g 285 (724)
-..+| .+--++-+.+ +-+.-+++||+++.- ..+-++..|-.+ ..-=
T Consensus 397 RTYIG------------amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIG------------AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccc------------cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 11111 1111222222 346678899998641 111111111000 0011
Q ss_pred CcEEE-EecCC-hH-H-HhhccCccceeeccCChHHHHHHHHHHh
Q 048789 286 SNKIV-FTTRE-IE-V-CGQMEAHRSFKVECLGFDDAWKLFEEKV 326 (724)
Q Consensus 286 ~s~il-iTtr~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (724)
|.|+ |+|-+ -+ + +..+..-..+++.+-+++|=.++-.++.
T Consensus 465 -S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 -SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred -hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444 44433 22 2 1222334678999999999888877775
No 172
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.25 E-value=0.0022 Score=65.90 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=65.4
Q ss_pred HHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcE-EEEEEeCCc-CCHHHHHHHHHHHcCCCccccC
Q 048789 163 FDGVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDF-VIWIVVSKD-LQLAKIQEGIAKKMGLFNESWQ 239 (724)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~ 239 (724)
..++++.+.. +.-..+.|+|..|+|||||++.+++... .++-+. ++|+-+++. .++.++.+.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3457777765 3445779999999999999999998773 222233 467666654 4688889988887764321101
Q ss_pred Cc---CHHHHHHHHHHHH--ccCceEEEeccccC
Q 048789 240 SK---GLEEKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 240 ~~---~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
.. ........+-+++ .+++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 1111111222222 57999999999854
No 173
>PRK08116 hypothetical protein; Validated
Probab=97.24 E-value=0.00062 Score=68.05 Aligned_cols=101 Identities=23% Similarity=0.223 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILS 255 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (724)
..+.++|..|+|||.||..+++... .....+++++ ..+++..+........ ..+.. .+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~~~----~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KEDEN----EIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----cccHH----HHHHHhc
Confidence 4588999999999999999999983 1233455554 4445555554443211 11222 2333344
Q ss_pred cCceEEEeccccC--hhchh--hccCCCCCC-CCCCcEEEEecCC
Q 048789 256 KKKFVLLLDDIWE--LVDLA--QVGLPVSSC-ASSSNKIVFTTRE 295 (724)
Q Consensus 256 ~k~~LlVlDdv~~--~~~~~--~l~~~~~~~-~~g~s~iliTtr~ 295 (724)
.-. ||||||+.. ..+|. .+...+... ..+ ..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~-~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKG-LPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCC-CCEEEECCC
Confidence 333 899999943 23332 222212111 233 568888864
No 174
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.23 E-value=1e-05 Score=86.74 Aligned_cols=104 Identities=25% Similarity=0.325 Sum_probs=74.3
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
-++.|+.|+|+.|.+.... ++..+++|+.|||++|. .+|. +...+. |+.|++++|.+++| .++.+|.+|+.||
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccc
Confidence 3567888888888876553 67888888888988888 4553 122333 88888888888887 4788888888899
Q ss_pred cCCcccccccCh-hhhcCCCcCcEEeccccCCC
Q 048789 467 LEYTYGVLKIPP-KVISNLKILQTLRMYECATV 498 (724)
Q Consensus 467 l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~ 498 (724)
+++|- +..... ..++.|..|+.|.+.||+..
T Consensus 261 lsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88873 332211 12677778888888887643
No 175
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.013 Score=65.19 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=100.3
Q ss_pred CccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|.+...+.+.+++..+. .+.+.++|+.|+||||+|+.+..... ....-+ ...++.....+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 368999999999999988765 45678899999999999999988762 111000 001111111222211110
Q ss_pred CCcccc---CCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEE-EecCChHHHhh
Q 048789 233 LFNESW---QSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIV-FTTREIEVCGQ 301 (724)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~il-iTtr~~~v~~~ 301 (724)
.+.... .....++.. .+.+.. .+++-++|+|++... ..+..+...+..-... ..+| .||....+...
T Consensus 88 ~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~-~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAH-VIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCC-eEEEEEeCChhhCcHH
Confidence 000000 011222222 222221 345668899998743 3344333322221222 3444 45544443322
Q ss_pred c-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 302 M-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 302 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
+ .....++..+++.++....+...+........ .+....|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 1 22346778889998888888776643321111 345677888888877543
No 176
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.013 Score=59.89 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=105.5
Q ss_pred ccccchhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCC------------CCCcEEEEEEeCCcCCHH
Q 048789 155 TVVGLQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTP------------NSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------~~f~~~~wv~v~~~~~~~ 221 (724)
+++|.+..++.+.+.+..+++ +...++|+.|+||+++|..+.+...... ..+.-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 579999999999999988764 7999999999999999998888762111 111112333221100000
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTR 294 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr 294 (724)
.+...-+...+...........++. +.+.+.+ .+++-++|+|++..- ...+.+...+..-.+. .-|++|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~-~fILi~~~ 162 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNG-TLILIAPS 162 (314)
T ss_pred ccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCC-eEEEEECC
Confidence 0111111111110000011222332 3344433 345668899998643 2222222222111122 34555555
Q ss_pred ChHHHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 295 EIEVCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 295 ~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
...+...+ .....+++.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 44443322 2345788999999999999887643211 111135788999999976554
No 177
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.16 E-value=0.00018 Score=61.30 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=50.0
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 469 (724)
..|...++++|.+..+++.+-..++.+..|+++++. .+|.++-.++.|+.|+++.|.+...|.-+..|.+|-+|+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 455555666666655555554555556666666555 566666666666666666666666665555566666666555
Q ss_pred cccccccChh
Q 048789 470 TYGVLKIPPK 479 (724)
Q Consensus 470 ~~~~~~lp~~ 479 (724)
+ ....+|.+
T Consensus 133 n-a~~eid~d 141 (177)
T KOG4579|consen 133 N-ARAEIDVD 141 (177)
T ss_pred C-ccccCcHH
Confidence 5 23444443
No 178
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.15 E-value=0.009 Score=68.87 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=86.9
Q ss_pred CCccccchhhHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEG 226 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 226 (724)
..+.+|.++.+++|+++|.. ....++.++|++|+||||+|+.++... ...|-. ++.+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccc
Confidence 34579999999999988863 245689999999999999999999876 223322 333443343333211
Q ss_pred HHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc------hhhccCCCC---------------CCCCC
Q 048789 227 IAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD------LAQVGLPVS---------------SCASS 285 (724)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~---------------~~~~g 285 (724)
-....+ .........+.. .....-+++||+++.... ...+...+. ..-.+
T Consensus 395 ~~~~~g--------~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIG--------SMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCC--------CCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111111 111122222222 122345788999864311 111111111 01122
Q ss_pred CcEEEEecCChHHHhh-ccCccceeeccCChHHHHHHHHHHhC
Q 048789 286 SNKIVFTTREIEVCGQ-MEAHRSFKVECLGFDDAWKLFEEKVG 327 (724)
Q Consensus 286 ~s~iliTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (724)
.-+|.|+....+... ..-...+++.+++.++-.++..++..
T Consensus 466 -v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 -VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred -eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 444445554433111 12234688999999999888887764
No 179
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.0009 Score=59.19 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 048789 178 VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 180
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.13 E-value=7.1e-05 Score=80.64 Aligned_cols=125 Identities=28% Similarity=0.335 Sum_probs=88.6
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCc
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYT 470 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~ 470 (724)
.+..+.+..|.+... ...+..+++|.+|++.++. .+...+..+.+|++|++++|.|..+. ++..|..|+.|++.+|
T Consensus 73 ~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhh-hcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 334444556654442 2236778899999999998 44444888999999999999999885 6778888999999999
Q ss_pred ccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHH--hhcCCCCCeEEEEEcchhhh
Q 048789 471 YGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEE--LLCLEHLSVFTITLNNFHAL 536 (724)
Q Consensus 471 ~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~~L~~L~i~~~~~~~~ 536 (724)
.+..++. +..+++|+.+++.+|.... +.. +..+.+++.+.+..+.+..+
T Consensus 151 -~i~~~~~--~~~l~~L~~l~l~~n~i~~--------------ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 151 -LISDISG--LESLKSLKLLDLSYNRIVD--------------IENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred -cchhccC--CccchhhhcccCCcchhhh--------------hhhhhhhhccchHHHhccCCchhcc
Confidence 4677765 6778999999998775322 222 45566666666665555443
No 181
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.0011 Score=63.96 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV 214 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 214 (724)
-.++|+|..|+||||++..+.... ...|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 368899999999999999999877 678888877754
No 182
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.09 E-value=3.6e-05 Score=82.66 Aligned_cols=82 Identities=28% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccc--hHHhccccCcEe
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLP--IEFKYLVNLKCL 465 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp--~~i~~L~~L~~L 465 (724)
..+++|.+|++++|.+..++.-....++ |..|.+++|. .-...|.+|.+|+.||+++|-+.... ..++.|..|+.|
T Consensus 206 r~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred Hhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 4556666666666665555433333443 6666666666 33345666666666666666544221 235566666666
Q ss_pred ecCCcc
Q 048789 466 NLEYTY 471 (724)
Q Consensus 466 ~l~~~~ 471 (724)
.|.+|+
T Consensus 285 ~LeGNP 290 (1096)
T KOG1859|consen 285 WLEGNP 290 (1096)
T ss_pred hhcCCc
Confidence 666663
No 183
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.019 Score=59.18 Aligned_cols=167 Identities=9% Similarity=0.063 Sum_probs=83.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC------ccccCCcCHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF------NESWQSKGLEEKAN 248 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~~ 248 (724)
...+.++|+.|+||||+|+.++....-. ..... ..+..-.-.+.+...-..+ .+.......++..+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~-~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCE-APQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCC-CCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 4568899999999999999998887211 10000 0000001111111000000 00001123333333
Q ss_pred HHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChH-HHhh-ccCccceeeccCChHHHH
Q 048789 249 KIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIE-VCGQ-MEAHRSFKVECLGFDDAW 319 (724)
Q Consensus 249 ~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~ 319 (724)
+.+.+ .+++-++|+|+++.- ...+.+...+..-..+ +.+|++|.+.+ +... ......+.+.+++.+++.
T Consensus 94 -l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~-~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 94 -LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGD-TVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred -HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCC-eEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 22222 234445577998752 2233322222111223 66666666543 3322 123456889999999999
Q ss_pred HHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 320 KLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 320 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
+.+.+...... .+-+..++..++|.|..+..+
T Consensus 172 ~~L~~~~~~~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 172 QWLQQALPESD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHhcccCC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 88876542111 233556788999999765543
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0046 Score=64.40 Aligned_cols=140 Identities=17% Similarity=0.164 Sum_probs=85.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
....+.|+|..|.|||.|++++.+.. .........+.+ +.+.....++..+.. ...+.+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~----~se~f~~~~v~a~~~-----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL----TSEDFTNDFVKALRD-----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec----cHHHHHHHHHHHHHh-----------hhHHHHHHh
Confidence 36799999999999999999999998 333332222222 233444444444321 123444444
Q ss_pred HccCceEEEeccccChhc---hh-hccCCCCCC-CCCCcEEEEecCCh---------HHHhhccCccceeeccCChHHHH
Q 048789 254 LSKKKFVLLLDDIWELVD---LA-QVGLPVSSC-ASSSNKIVFTTREI---------EVCGQMEAHRSFKVECLGFDDAW 319 (724)
Q Consensus 254 l~~k~~LlVlDdv~~~~~---~~-~l~~~~~~~-~~g~s~iliTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~ 319 (724)
. .-=++++||++-... |+ .+...|... ..| -.|++|++.. .....+..+-.+++.+.+.+...
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~-kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG-KQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC-CEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 4 334889999975322 21 222222211 123 4788888642 34556666778999999999999
Q ss_pred HHHHHHhCCCCCCCC
Q 048789 320 KLFEEKVGRDTLDTH 334 (724)
Q Consensus 320 ~lf~~~~~~~~~~~~ 334 (724)
.++.+++.......+
T Consensus 251 aiL~kka~~~~~~i~ 265 (408)
T COG0593 251 AILRKKAEDRGIEIP 265 (408)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999997765543333
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.04 E-value=0.0033 Score=69.87 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHhhcC-----CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEE-----QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+++|-++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999888752 34579999999999999999999876
No 186
>PRK07261 topology modulation protein; Provisional
Probab=97.03 E-value=0.003 Score=58.64 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=41.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHcc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSK 256 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (724)
.|.|+|++|+||||||+.+.....-..-+.|...|-... ...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW-----------------------QERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc-----------------------ccCCHHHHHHHHHHHHhC
Confidence 489999999999999999987751112234545542110 222344555666666666
Q ss_pred CceEEEeccccC
Q 048789 257 KKFVLLLDDIWE 268 (724)
Q Consensus 257 k~~LlVlDdv~~ 268 (724)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 55 57777643
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.018 Score=64.67 Aligned_cols=104 Identities=22% Similarity=0.334 Sum_probs=64.7
Q ss_pred CccccchhhHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQ 224 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 224 (724)
..++|-+..++.+.+.+.. ...++....|+.|||||-||+.++... .+.=+..+-++.|.--.-..+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHHH
Confidence 3589999999999888753 245688889999999999999999887 2222445545444432222221
Q ss_pred HHHHHHcCCCccccCCcCHHHHHHHHHHHHccCce-EEEeccccC
Q 048789 225 EGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKF-VLLLDDIWE 268 (724)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 268 (724)
+ =+|.+.+- .. .++ ...|-+.++.++| ++.||+|..
T Consensus 568 r----LIGaPPGY-VG--yee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 568 R----LIGAPPGY-VG--YEE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred H----HhCCCCCC-ce--ecc-ccchhHhhhcCCCeEEEechhhh
Confidence 1 12332211 11 111 3345566677877 778899975
No 188
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.97 E-value=0.007 Score=64.26 Aligned_cols=133 Identities=19% Similarity=0.202 Sum_probs=81.9
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCC
Q 048789 161 STFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQS 240 (724)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (724)
.-..++.+.+..... ++.|+|+-++||||+++.+..... .. .+++...+......-
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~----------------- 79 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIE----------------- 79 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhh-----------------
Confidence 344445555444433 999999999999999977776652 21 555543322111111
Q ss_pred cCHHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHH-----hhc-cCccceeeccCC
Q 048789 241 KGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVC-----GQM-EAHRSFKVECLG 314 (724)
Q Consensus 241 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~-----~~~-~~~~~~~l~~L~ 314 (724)
..+....+.+.-..++..++||.|....+|+.....+.+.++. +|++|+-+.... ... +....+++.||+
T Consensus 80 --l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 80 --LLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred --HHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 1111111222112277899999999999999877666665443 688888776542 221 335578899999
Q ss_pred hHHHHHH
Q 048789 315 FDDAWKL 321 (724)
Q Consensus 315 ~~~~~~l 321 (724)
..|-..+
T Consensus 156 F~Efl~~ 162 (398)
T COG1373 156 FREFLKL 162 (398)
T ss_pred HHHHHhh
Confidence 9887654
No 189
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.95 E-value=0.02 Score=58.78 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV 214 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 214 (724)
...+.++|..|+|||+||..+++... ... ..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 37799999999999999999999873 222 34566653
No 190
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.026 Score=61.09 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=86.9
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
+++-|.++-+.++.+.+.- ...+-|..+|++|.|||++|+.+++.. +..| +.+...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp--- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP--- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH---
Confidence 3444566555555444321 467889999999999999999999987 3333 222221
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh-------------chhhccCCCCCCCCCCc
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV-------------DLAQVGLPVSSCASSSN 287 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~g~s 287 (724)
+++... ...+...+.+..++.-+--.+++.||+++... .+.++...+...... .
T Consensus 503 -----EL~sk~-------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~-k 569 (693)
T KOG0730|consen 503 -----ELFSKY-------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL-K 569 (693)
T ss_pred -----HHHHHh-------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc-C
Confidence 111111 11222223333333333456888888876421 112222222222222 2
Q ss_pred EEEE--ec-CChHH-Hhhcc---CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHH
Q 048789 288 KIVF--TT-REIEV-CGQME---AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAE 342 (724)
Q Consensus 288 ~ili--Tt-r~~~v-~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 342 (724)
.|+| .| |...+ ...+. .+..+.+..=+.+.-.++|+.++-.......-+++.++.
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 3333 23 33322 11122 345566776677788899999987665444445555543
No 191
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.94 E-value=0.0016 Score=67.67 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=52.1
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCC-CccccchHHhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHS-RIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~-~i~~Lp~~i~~L~~L~~L~ 466 (724)
+.+++.|++++|.+..++ . -..+|+.|.+++|. .+|+.+. .+|++|++++| .+..+|.+ |+.|+
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-V---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccC-C---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEE
Confidence 467889999988766664 2 12358889998877 6666553 58899999988 77788865 44555
Q ss_pred cCCc--ccccccChh
Q 048789 467 LEYT--YGVLKIPPK 479 (724)
Q Consensus 467 l~~~--~~~~~lp~~ 479 (724)
+..+ ..+..+|.+
T Consensus 119 L~~n~~~~L~~LPss 133 (426)
T PRK15386 119 IKGSATDSIKNVPNG 133 (426)
T ss_pred eCCCCCcccccCcch
Confidence 5433 234556654
No 192
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.86 E-value=0.013 Score=63.51 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=80.6
Q ss_pred CccccchhhHHHHHHHh---hc-------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHH
Q 048789 154 ATVVGLQSTFDGVWKCL---ME-------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKI 223 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 223 (724)
.++.|.+..++.+.+.. .. ...+-|.++|++|+|||.+|+.+++.. ...| +-++.+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------K- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------H-
Confidence 35677766555554321 11 235679999999999999999999987 2222 111111 1
Q ss_pred HHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc--------------hhhccCCCCCCCCCCcEE
Q 048789 224 QEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD--------------LAQVGLPVSSCASSSNKI 289 (724)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~g~s~i 289 (724)
+.... ...+...+.+.+...-...+++|++|+++.... ...+...+.....+ --|
T Consensus 295 ---l~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~-V~v 363 (489)
T CHL00195 295 ---LFGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP-VFV 363 (489)
T ss_pred ---hcccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc-eEE
Confidence 11110 111222222223222345789999999864210 00011111111222 345
Q ss_pred EEecCChHHH-----hhccCccceeeccCChHHHHHHHHHHhCCC
Q 048789 290 VFTTREIEVC-----GQMEAHRSFKVECLGFDDAWKLFEEKVGRD 329 (724)
Q Consensus 290 liTtr~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 329 (724)
|.||...... ....-+..+.++.-+.++-.++|..+....
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 5577654421 111234567788788899999998887543
No 193
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.04 Score=59.32 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC-cCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK-DLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
..+|+|+|.+|+||||++..+...+. .+.....+..++... .......+......++.... ...+..++...+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~- 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLER- 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHH-
Confidence 47999999999999999999887662 122223344444322 11222223333333333221 12233344444433
Q ss_pred HccCceEEEecccc
Q 048789 254 LSKKKFVLLLDDIW 267 (724)
Q Consensus 254 l~~k~~LlVlDdv~ 267 (724)
+. +.-++++|..-
T Consensus 426 l~-~~DLVLIDTaG 438 (559)
T PRK12727 426 LR-DYKLVLIDTAG 438 (559)
T ss_pred hc-cCCEEEecCCC
Confidence 33 34578888864
No 194
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.012 Score=61.87 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=36.0
Q ss_pred ccccchh---hHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQS---TFDGVWKCLMEE---------QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++-|.|+ ++++|++.|.+. =++-|.++|++|.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567664 567788888762 25679999999999999999999886
No 195
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.84 E-value=0.0015 Score=66.82 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=40.8
Q ss_pred CccccchhhHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999998864 246799999999999999999999988
No 196
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.82 E-value=0.0003 Score=60.03 Aligned_cols=103 Identities=23% Similarity=0.228 Sum_probs=80.5
Q ss_pred CcceEEEeecccccccCh--hhhhcCCCceEEEccCCC--CCchhhhcc-ccCCeeecCCCCccccchHHhccccCcEee
Q 048789 392 PRLRTLFLSSNIFHRVNS--DFFQSMASLRVLKLSYSN--PLLFEISKV-VSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~--~lp~~i~~L-~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
..+..++|++|.+-.+.. ..+....+|...+|++|. +.|+.+... +.+.+|+|++|.+..+|..+..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 355677888887533322 234556678888999999 888887664 489999999999999999999999999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccC
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
++.|+ +...|.- |..|.+|-.|+..++.
T Consensus 107 l~~N~-l~~~p~v-i~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 107 LRFNP-LNAEPRV-IAPLIKLDMLDSPENA 134 (177)
T ss_pred cccCc-cccchHH-HHHHHhHHHhcCCCCc
Confidence 99985 6777764 7778888888887654
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.81 E-value=0.18 Score=59.23 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHhhc--------C-CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME--------E-QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999998888887753 1 23578999999999999999999876
No 198
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.78 E-value=0.0059 Score=57.83 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeC-CcCCHHHHHHHHHHHcCCCcccc-CCcCHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVS-KDLQLAKIQEGIAKKMGLFNESW-QSKGLEEKANKIFK 252 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (724)
++||.++|+.|+||||.+..++..+. .+ -..+..++.. ......+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 47999999999999988888887772 22 3456666654 33456677788888887653211 12234444433333
Q ss_pred HHccC-ceEEEeccc
Q 048789 253 ILSKK-KFVLLLDDI 266 (724)
Q Consensus 253 ~l~~k-~~LlVlDdv 266 (724)
..+.+ .=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 33333 347777765
No 199
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.027 Score=59.22 Aligned_cols=148 Identities=24% Similarity=0.265 Sum_probs=88.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
....+.+.|++|+|||+||..++.. ..|..+--++ ++++ +|.. .............+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiS------pe~m-------iG~s----EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIIS------PEDM-------IGLS----ESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeC------hHHc-------cCcc----HHHHHHHHHHHHHHh
Confidence 4567888999999999999999765 4566544332 1111 1111 111122233334445
Q ss_pred HccCceEEEeccccChhchhhccCCCCCC------------CCCCcE--EEEecCChHHHhhccC----ccceeeccCCh
Q 048789 254 LSKKKFVLLLDDIWELVDLAQVGLPVSSC------------ASSSNK--IVFTTREIEVCGQMEA----HRSFKVECLGF 315 (724)
Q Consensus 254 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~------------~~g~s~--iliTtr~~~v~~~~~~----~~~~~l~~L~~ 315 (724)
.+..--.+|+||+....+|-.+++.+.+. .+.|-| |+-||....+...|+- ...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 56667799999998877777665544321 111144 4447777788777753 34678888876
Q ss_pred -HHHHHHHHHHh-CCCCCCCCCChHHHHHHHHHHh
Q 048789 316 -DDAWKLFEEKV-GRDTLDTHPDIPELAEAVAREC 348 (724)
Q Consensus 316 -~~~~~lf~~~~-~~~~~~~~~~~~~~~~~i~~~c 348 (724)
++..+.++..- | .+.+...++.+...+|
T Consensus 675 ~~~~~~vl~~~n~f-----sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNIF-----SDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccCC-----CcchhHHHHHHHhccc
Confidence 66666666542 2 1234455566666666
No 200
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.76 E-value=0.049 Score=56.70 Aligned_cols=199 Identities=15% Similarity=0.208 Sum_probs=119.0
Q ss_pred chhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHH-HHHHHhccCCCCCCcEEEEEEeCC---cCCHHHHHHHHHHHcCCC
Q 048789 159 LQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLL-TQINNKFLDTPNSFDFVIWIVVSK---DLQLAKIQEGIAKKMGLF 234 (724)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~~~l~~~ 234 (724)
|.+..++|..||.+..-.+|.|.|+-|+||+.|+ .++..+. +. +..+++.+ ..+-..++..++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-KN------VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-CC------EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999988899999999999999999 7776654 11 44444322 123344455555554321
Q ss_pred -----------------------ccccCCcCHHHHHHH-------HHHH-------------------H---ccCceEEE
Q 048789 235 -----------------------NESWQSKGLEEKANK-------IFKI-------------------L---SKKKFVLL 262 (724)
Q Consensus 235 -----------------------~~~~~~~~~~~~~~~-------l~~~-------------------l---~~k~~LlV 262 (724)
..........++.+. |++. | ..++-++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 111112222222221 1110 0 01256899
Q ss_pred eccccCh-----------hchhhccCCCCCCCCCCcEEEEecCChHHHh----hc--cCccceeeccCChHHHHHHHHHH
Q 048789 263 LDDIWEL-----------VDLAQVGLPVSSCASSSNKIVFTTREIEVCG----QM--EAHRSFKVECLGFDDAWKLFEEK 325 (724)
Q Consensus 263 lDdv~~~-----------~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~----~~--~~~~~~~l~~L~~~~~~~lf~~~ 325 (724)
+|+.-.. .+|..... . ++- ..||+.|-+..... .+ .....+.+...+.+.|.++...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv---~-~nI-AHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV---Q-NNI-AHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH---h-cCc-cEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9997542 23433211 1 222 67888887755433 32 23457789999999999999998
Q ss_pred hCCCCCC------------CC-----CChHHHHHHHHHHhCCCCchHHHHHHHHhcCCChh
Q 048789 326 VGRDTLD------------TH-----PDIPELAEAVARECGGLPLALITVGRAMASRKTPR 369 (724)
Q Consensus 326 ~~~~~~~------------~~-----~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~ 369 (724)
....... .. .....-...++...||=-.=+..+++.++...++.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 8653200 00 12333455677888998888888888888765443
No 201
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.75 E-value=0.0012 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|.|.|++|+||||+|+.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 202
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.038 Score=57.29 Aligned_cols=162 Identities=7% Similarity=-0.003 Sum_probs=81.4
Q ss_pred cccc-chhhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 155 TVVG-LQSTFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 155 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.++| -+..++.+.+.+..+++ ....++|+.|+||||+|+.+.+.... ....... .+......+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4567 66677777777776654 46699999999999999999887621 1100000 0000011111110000
Q ss_pred CCc----cccCCcCHHHHHHHHHHH----HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCCh-HHHhh
Q 048789 233 LFN----ESWQSKGLEEKANKIFKI----LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREI-EVCGQ 301 (724)
Q Consensus 233 ~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~-~v~~~ 301 (724)
.+. ........++..+.+... ..+.+=++|+|++..- ...+.+...+..-..+ +.+|++|.+. .+...
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~-~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG-TTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC-ceEEEEeCChHhCcHH
Confidence 000 000112233333222211 1244557889998643 2223333222222233 5566666543 33322
Q ss_pred c-cCccceeeccCChHHHHHHHHHH
Q 048789 302 M-EAHRSFKVECLGFDDAWKLFEEK 325 (724)
Q Consensus 302 ~-~~~~~~~l~~L~~~~~~~lf~~~ 325 (724)
+ .....+++.+++.++..+.+...
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2 23457889999999988877653
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.73 E-value=0.029 Score=65.18 Aligned_cols=171 Identities=17% Similarity=0.163 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.+..++.+.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3467878777777665431 234568999999999999999999986 2222 22221
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh--------------chhhccCCCCCC--CC
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV--------------DLAQVGLPVSSC--AS 284 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~ 284 (724)
.+ ++... ...+...+...+...-...++++++|+++... ....+...+... ..
T Consensus 521 ~~----l~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 521 PE----ILSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred HH----Hhhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 11 11111 11122222222333334577999999986421 011121112111 12
Q ss_pred CCcEEEEecCChHHHhh--c---cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 285 SSNKIVFTTREIEVCGQ--M---EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 285 g~s~iliTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
+ -.||.||...+.... . .-+..+.+...+.++-.++|..+..........+ ...+++.+.|.-
T Consensus 590 ~-v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 N-VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred C-EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 2 455667765544221 1 2345677888888988999987665433222223 345666676644
No 204
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.73 E-value=0.0067 Score=56.72 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=40.6
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++||-++.++++.-...++..+-+.|.||+|+||||-+..+++..
T Consensus 28 dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 579999999998877788899999999999999999998888876
No 205
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.70 E-value=0.013 Score=67.85 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME---------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+.+.+.. ....++.++|+.|+|||++|+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578888888888877652 124578999999999999999999876
No 206
>PRK08181 transposase; Validated
Probab=96.68 E-value=0.0032 Score=62.61 Aligned_cols=78 Identities=23% Similarity=0.212 Sum_probs=45.8
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHH
Q 048789 168 KCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKA 247 (724)
Q Consensus 168 ~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 247 (724)
+|+. ....+.++|++|+|||.||..+.+... .. ...++|++ ..++...+.... .........
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~-g~~v~f~~------~~~L~~~l~~a~-------~~~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI--EN-GWRVLFTR------TTDLVQKLQVAR-------RELQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH--Hc-CCceeeee------HHHHHHHHHHHH-------hCCcHHHHH
Confidence 4543 335699999999999999999998772 12 23345544 345555554321 111222222
Q ss_pred HHHHHHHccCceEEEeccccC
Q 048789 248 NKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 248 ~~l~~~l~~k~~LlVlDdv~~ 268 (724)
. .+ .+-=||||||+..
T Consensus 163 ~----~l-~~~dLLIIDDlg~ 178 (269)
T PRK08181 163 A----KL-DKFDLLILDDLAY 178 (269)
T ss_pred H----HH-hcCCEEEEecccc
Confidence 2 22 2345999999954
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.68 E-value=0.015 Score=67.56 Aligned_cols=171 Identities=17% Similarity=0.160 Sum_probs=90.6
Q ss_pred ccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 155 TVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~-----i~i~~~---- 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF-----ISINGP---- 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE-----EEEecH----
Confidence 478999998888776631 234678899999999999999999986 2222 222211
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh-------------chhhccCCCCCC-CCCCc
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV-------------DLAQVGLPVSSC-ASSSN 287 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~-~~g~s 287 (724)
.+ .... .......+...+.........+|++||+.... ....+...+... ..+ .
T Consensus 247 ~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~-~ 314 (733)
T TIGR01243 247 EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG-R 314 (733)
T ss_pred HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC-C
Confidence 11 1110 11112223333333445567899999985421 011121111111 122 3
Q ss_pred EEEE-ecCChH-HHhhc----cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 288 KIVF-TTREIE-VCGQM----EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 288 ~ili-Ttr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
.+++ ||.... +...+ .-...+.+...+.++-.+++..+........+. ....+++.+.|.--
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCH
Confidence 3444 554432 11111 113456777778888888887655332211111 24567777777653
No 208
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.66 E-value=0.055 Score=57.76 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC-cCCHHHHHHHHHHHcCCCcccc-CCcCHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK-DLQLAKIQEGIAKKMGLFNESW-QSKGLEEKANKIF 251 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 251 (724)
...+|.++|.+|+||||.|..++..+. +..+ .+.-|+... .+...+.++.+..+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999998872 2223 333344332 2233455666777766543211 1123333333333
Q ss_pred HHHccCceEEEecccc
Q 048789 252 KILSKKKFVLLLDDIW 267 (724)
Q Consensus 252 ~~l~~k~~LlVlDdv~ 267 (724)
+.+.+. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333333 567788763
No 209
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.63 E-value=0.034 Score=53.07 Aligned_cols=170 Identities=11% Similarity=0.169 Sum_probs=92.5
Q ss_pred CccccchhhHHH---HHHHhhcC------CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHH
Q 048789 154 ATVVGLQSTFDG---VWKCLMEE------QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQ 224 (724)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 224 (724)
++++|.++.+.. |++.|.+. .++-|..+|++|.|||.+|+++++.. +-.|-. | ...+++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~---v------kat~li 188 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLL---V------KATELI 188 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEE---e------chHHHH
Confidence 457888766543 56677652 57899999999999999999999987 222211 1 111111
Q ss_pred HHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh--------------chhhccCCCCC--CCCCCc
Q 048789 225 EGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV--------------DLAQVGLPVSS--CASSSN 287 (724)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~--~~~g~s 287 (724)
-+.. .+....++.+.+.. +.-+|++.+|+++... ..+.+...+.. .+.| -
T Consensus 189 ---GehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG-V 255 (368)
T COG1223 189 ---GEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG-V 255 (368)
T ss_pred ---HHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc-e
Confidence 1111 12223334444433 3478999999986421 11222222221 2334 4
Q ss_pred EEEEecCChHHHhhc-c--CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 288 KIVFTTREIEVCGQM-E--AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 288 ~iliTtr~~~v~~~~-~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
..|-.|...+..+.. . -...++..--+++|-.+++..++..-...-... .+.++++.+|..
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 444455554443221 1 123455555678888888888875433222222 455666666654
No 210
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.61 E-value=0.013 Score=56.56 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQE 225 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 225 (724)
.-.++.|+|.+|+|||+++.++..... .....++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 357999999999999999999887762 3357889999876 66666554
No 211
>PRK06921 hypothetical protein; Provisional
Probab=96.59 E-value=0.0022 Score=64.03 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV 214 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 214 (724)
....+.++|..|+|||+||..+++... +..-..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456899999999999999999999872 221344566653
No 212
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.56 E-value=0.018 Score=56.39 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC------cEEEEEEeCCcCCHHHHHHHHHHHcCCCcc-------ccCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF------DFVIWIVVSKDLQLAKIQEGIAKKMGLFNE-------SWQS 240 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f------~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-------~~~~ 240 (724)
.-.++.|+|.+|+|||++|.+++.... ..- ..++|++....++...+. .+.+..+.... -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 456999999999999999999877651 222 567899988777765554 33333222110 0122
Q ss_pred cCHHHHHHHHHHHHc----cCceEEEecccc
Q 048789 241 KGLEEKANKIFKILS----KKKFVLLLDDIW 267 (724)
Q Consensus 241 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~ 267 (724)
.+.++....+.+... .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 345555555555442 244588888874
No 213
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.56 E-value=0.0085 Score=69.89 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 153 PATVVGLQSTFDGVWKCLME---------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.+....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999888742 134588999999999999999998876
No 214
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.0012 Score=63.85 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=41.4
Q ss_pred CCcceEEEeecccccccCh--hhhhcCCCceEEEccCCC--CCchhh-hccccCCeeecCCCCcc--ccchHHhccccCc
Q 048789 391 CPRLRTLFLSSNIFHRVNS--DFFQSMASLRVLKLSYSN--PLLFEI-SKVVSLQHLDLSHSRIE--RLPIEFKYLVNLK 463 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~--~lp~~i-~~L~~L~~L~L~~~~i~--~Lp~~i~~L~~L~ 463 (724)
+..++.+++.+|.++.... ..+.+|++|++|+|+.|. .-.++. -.+.+|++|-|.|+.+. .....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3455666666665544322 234566666666666665 111111 23456666666665433 4444455555555
Q ss_pred EeecCCc
Q 048789 464 CLNLEYT 470 (724)
Q Consensus 464 ~L~l~~~ 470 (724)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5555544
No 215
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.096 Score=53.51 Aligned_cols=174 Identities=13% Similarity=0.129 Sum_probs=90.0
Q ss_pred hhHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc-----EEEEEEeCCcCCHHHHHHHHHHHcC-C
Q 048789 161 STFDGVWKCLMEEQM-GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD-----FVIWIVVSKDLQLAKIQEGIAKKMG-L 233 (724)
Q Consensus 161 ~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-----~~~wv~v~~~~~~~~~~~~i~~~l~-~ 233 (724)
...+.+...+..+++ ..+.++|+.|+||+++|..++...-- ..... ++-|+..+..+|..- +. .
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~--------i~~~ 81 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQL--------VSFI 81 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEE--------EecC
Confidence 345666677766654 46999999999999999998877621 11010 000010000011000 00 0
Q ss_pred Cccc----cCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hc----hhhccCCCCCCCCCCcEEEEecCC-hH
Q 048789 234 FNES----WQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VD----LAQVGLPVSSCASSSNKIVFTTRE-IE 297 (724)
Q Consensus 234 ~~~~----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~----~~~l~~~~~~~~~g~s~iliTtr~-~~ 297 (724)
+... ......++. +.+.+.+ .+++=++|+|+++.- .. +..+..| ..+ +.+|++|.+ ..
T Consensus 82 p~~~~~k~~~~I~idqI-R~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP----p~~-~~fiL~~~~~~~ 155 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQV-REISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP----SPG-RYLWLISAQPAR 155 (319)
T ss_pred CCcccccccccccHHHH-HHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC----CCC-CeEEEEECChhh
Confidence 0000 001122222 2233322 245568899998653 22 2233333 123 556665554 44
Q ss_pred HHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 298 VCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
+...+ .-...+.+.+++.+++...+... +. + ..-+..++..++|.|+.+..+
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHH
Confidence 43222 22446788899999988887653 11 1 222567889999999866543
No 216
>PRK12377 putative replication protein; Provisional
Probab=96.54 E-value=0.011 Score=57.93 Aligned_cols=75 Identities=25% Similarity=0.257 Sum_probs=45.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
....+.++|.+|+|||+||..+++... .....++++++ .++...+-..... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHH
Confidence 346899999999999999999999983 22333455554 3444444433211 11111 12222
Q ss_pred HccCceEEEeccccC
Q 048789 254 LSKKKFVLLLDDIWE 268 (724)
Q Consensus 254 l~~k~~LlVlDdv~~ 268 (724)
+ .+--||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 2 3556999999943
No 217
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.49 E-value=0.0019 Score=61.76 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=48.4
Q ss_pred cccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccce
Q 048789 567 FSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLER 646 (724)
Q Consensus 567 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~ 646 (724)
..+..+.+|+.|+|..|.++-.....++.. + ..-+.|+.|.+.+|-.-..= .... -..++-..+|+|..
T Consensus 208 ~gl~y~~~LevLDlqDNtft~~gS~~La~a--l--~~W~~lrEL~lnDClls~~G-----~~~v--~~~f~e~~~p~l~~ 276 (388)
T COG5238 208 LGLFYSHSLEVLDLQDNTFTLEGSRYLADA--L--CEWNLLRELRLNDCLLSNEG-----VKSV--LRRFNEKFVPNLMP 276 (388)
T ss_pred HHHHHhCcceeeeccccchhhhhHHHHHHH--h--cccchhhhccccchhhcccc-----HHHH--HHHhhhhcCCCccc
Confidence 345667889999998876542211110000 0 11256888888888421110 0000 00023345788888
Q ss_pred eccccccc----cccc---cCCCCCCCCccEEeecC
Q 048789 647 LILEELKN----LKTI---HSKALPFPCLKEMSVDG 675 (724)
Q Consensus 647 L~l~~~~~----L~~~---~~~~~~~p~L~~L~i~~ 675 (724)
|.+.+-.. +..+ .....++|-|..|.+.|
T Consensus 277 L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 277 LPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred cccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 87765221 1111 01345677777776665
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.48 E-value=0.0089 Score=58.49 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQ 224 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 224 (724)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++.+.+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH
Confidence 356999999999999999999988762 234678899887 55555543
No 219
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.48 E-value=0.0052 Score=61.56 Aligned_cols=134 Identities=16% Similarity=0.295 Sum_probs=72.1
Q ss_pred cchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEE----EeCCcC---------CHHHHH
Q 048789 158 GLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWI----VVSKDL---------QLAKIQ 224 (724)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv----~v~~~~---------~~~~~~ 224 (724)
+|..+..--+++|.++.+..|.+.|.+|.|||.||-+..=...-.+..|..++-. .+++.. .+.-..
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 3555555667889999999999999999999988755332221224555543321 233221 122233
Q ss_pred HHHHHHcCCCccccCCcCHHHHHHHH----------HHHHccC---ceEEEeccccCh--hchhhccCCCCCCCCCCcEE
Q 048789 225 EGIAKKMGLFNESWQSKGLEEKANKI----------FKILSKK---KFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKI 289 (724)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l----------~~~l~~k---~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~i 289 (724)
+.|...+..-... .... ....+.+ ..+++|+ +-++|+|+.++. .+...+ +...+.| |||
T Consensus 308 q~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~G-sKI 381 (436)
T COG1875 308 QAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGEG-SKI 381 (436)
T ss_pred HHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccCC-CEE
Confidence 3343333211100 1111 1111111 1123443 458999999764 344444 3345677 999
Q ss_pred EEecCChH
Q 048789 290 VFTTREIE 297 (724)
Q Consensus 290 liTtr~~~ 297 (724)
+.|--..+
T Consensus 382 Vl~gd~aQ 389 (436)
T COG1875 382 VLTGDPAQ 389 (436)
T ss_pred EEcCCHHH
Confidence 98876544
No 220
>PRK10867 signal recognition particle protein; Provisional
Probab=96.48 E-value=0.091 Score=56.02 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.++|.+|+||||.+..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999888887766
No 221
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.47 E-value=0.0091 Score=60.71 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-+++-|+|++|+||||||.+++... ...-..++|++....+++. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35689999999999999999987766 2334578899887776653 34445443221 1233455555555
Q ss_pred HHHHcc-CceEEEeccc
Q 048789 251 FKILSK-KKFVLLLDDI 266 (724)
Q Consensus 251 ~~~l~~-k~~LlVlDdv 266 (724)
...++. .--++|+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 554433 4557888887
No 222
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.46 E-value=0.068 Score=55.64 Aligned_cols=40 Identities=20% Similarity=0.435 Sum_probs=32.8
Q ss_pred hhhHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 160 QSTFDGVWKCLME---EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.-.+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445666677765 467899999999999999999999988
No 223
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.75 Score=48.17 Aligned_cols=150 Identities=18% Similarity=0.213 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL- 254 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 254 (724)
+--.++|++|.|||+++.+++|.. .|+.+- ...+..- +..+ |+..|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~-----------------------~n~d----Lr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVK-----------------------LDSD----LRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeecccc-----------------------CcHH----HHHHHH
Confidence 456899999999999999999987 344321 1111111 1111 22222
Q ss_pred -ccCceEEEeccccChhch-----------h---------hccCCCC--CCCCCCcEEE-EecCChHHHh-----hccCc
Q 048789 255 -SKKKFVLLLDDIWELVDL-----------A---------QVGLPVS--SCASSSNKIV-FTTREIEVCG-----QMEAH 305 (724)
Q Consensus 255 -~~k~~LlVlDdv~~~~~~-----------~---------~l~~~~~--~~~~g~s~il-iTtr~~~v~~-----~~~~~ 305 (724)
...+-+||+.|++...+. . .+...+. +...|+-||+ .||...+-.+ ....+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 235567777777643111 0 0111110 1112213555 5776655422 21233
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhc
Q 048789 306 RSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMAS 364 (724)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~ 364 (724)
.-+.+.-.+.+.-..||.++.+... . ..+..+|.+.-.|.-+.=..++..|-.
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 4567888888888899998887543 1 234566666556665555555554443
No 224
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.44 E-value=0.04 Score=50.55 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 158 GLQSTFDGVWKCLMEEQMG-IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|-++..+.+.+.+..+... .+.++|..|+||+++|..+.+..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4556677777777776654 68999999999999999988876
No 225
>PRK06526 transposase; Provisional
Probab=96.41 E-value=0.005 Score=60.92 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+...+.++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34578999999999999999998876
No 226
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.40 E-value=0.13 Score=56.41 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=109.6
Q ss_pred CCccccchhhHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhccC-----CCCCCcEEEEEEeCCcCCHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME-----EQMGIVGLYGMGGVGKTTLLTQINNKFLD-----TPNSFDFVIWIVVSKDLQLAK 222 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-----~~~~f~~~~wv~v~~~~~~~~ 222 (724)
|..+-+|+.+..+|-..+.. +..+.+-|.|-+|+|||..+..|.+.... .-..|+. +.|+.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 34567899999999887753 23458999999999999999999996521 1233443 3344444557999
Q ss_pred HHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccChhc-hhhccC-CCCCC-CCCCcEEEEecC
Q 048789 223 IQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWELVD-LAQVGL-PVSSC-ASSSNKIVFTTR 294 (724)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~-~~~l~~-~~~~~-~~g~s~iliTtr 294 (724)
++..|..++.+.. .......+.+..+. +.+.+++++|+++.... -+++.. .|.+- .++ ||++|-+=
T Consensus 474 ~Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~-sKLvvi~I 547 (767)
T KOG1514|consen 474 IYEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKN-SKLVVIAI 547 (767)
T ss_pred HHHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCC-CceEEEEe
Confidence 9999999997643 23333344444443 24678999998754211 011111 11111 234 77665432
Q ss_pred C--hH---------HHhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 295 E--IE---------VCGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 295 ~--~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
. .+ ++..++ ...+...|.++++-.++...+..+...-.+.-.+-++++++.-.|-.-.|+.
T Consensus 548 aNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRrald 619 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALD 619 (767)
T ss_pred cccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHH
Confidence 1 11 111211 2346667777777777777665443211122233344444444444433433
No 227
>PRK06696 uridine kinase; Validated
Probab=96.39 E-value=0.0046 Score=60.29 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=34.4
Q ss_pred chhhHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 159 LQSTFDGVWKCLME---EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 159 r~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|++.+++|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 56667777777753 567899999999999999999999987
No 228
>PRK09183 transposase/IS protein; Provisional
Probab=96.37 E-value=0.0086 Score=59.63 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998775
No 229
>PRK09354 recA recombinase A; Provisional
Probab=96.36 E-value=0.012 Score=60.29 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-+++-|+|++|+||||||.+++... ...-..++||+....++.. .+++++...+. ......++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45699999999999999999988776 2334678899888777653 34555543221 1233455555555
Q ss_pred HHHHc-cCceEEEeccc
Q 048789 251 FKILS-KKKFVLLLDDI 266 (724)
Q Consensus 251 ~~~l~-~k~~LlVlDdv 266 (724)
...++ ++--++|+|.|
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 55543 34557888887
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.36 E-value=0.017 Score=67.92 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEE---------QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45899999999998887541 24578899999999999999999876
No 231
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.35 E-value=0.0071 Score=61.54 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+..++|||++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999999997
No 232
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.33 E-value=0.0092 Score=56.36 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=62.5
Q ss_pred cchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc--CC-----------HHHHH
Q 048789 158 GLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD--LQ-----------LAKIQ 224 (724)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~-----------~~~~~ 224 (724)
.+..+....++.|. ...++.+.|++|.|||.||-...-+. -..+.|+.++++.-.-. .+ ..-..
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34555666667766 55699999999999999998888765 23488888888752221 00 00011
Q ss_pred HHHHHHcCCCccccCCcCHHHHHHHH------HHHHccC---ceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEec
Q 048789 225 EGIAKKMGLFNESWQSKGLEEKANKI------FKILSKK---KFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTT 293 (724)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTt 293 (724)
..+...+..-. .....+.+.+.= ..+++|+ ..++|+|++++. .++..+... .+.+ ||++++-
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~-skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEG-SKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT--EEEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCC-cEEEEec
Confidence 11222221110 111122211100 1133443 469999999764 456665444 3556 9999987
Q ss_pred CChH
Q 048789 294 REIE 297 (724)
Q Consensus 294 r~~~ 297 (724)
-..+
T Consensus 154 D~~Q 157 (205)
T PF02562_consen 154 DPSQ 157 (205)
T ss_dssp ----
T ss_pred Ccee
Confidence 6544
No 233
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.29 E-value=0.023 Score=53.67 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=37.8
Q ss_pred ccccchhhHHHHHHH----hhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKC----LMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~----L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.+...+.+++- +..-...-|.+||.-|+||++|++++.+.+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 579999999888763 333456689999999999999999999998
No 234
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.28 E-value=0.015 Score=59.19 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-+++-|+|++|+||||||.++..... ..-..++|++....++.. .+++++...+. ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456999999999999999998877762 234567888877665553 34555543221 1233455555555
Q ss_pred HHHHc-cCceEEEecccc
Q 048789 251 FKILS-KKKFVLLLDDIW 267 (724)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (724)
...++ +..-++|+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 356688899874
No 235
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.00082 Score=64.37 Aligned_cols=101 Identities=24% Similarity=0.210 Sum_probs=76.3
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchH--HhccccCcEeec
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIE--FKYLVNLKCLNL 467 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~--i~~L~~L~~L~l 467 (724)
+.+++.|++++|.+..+ .....|+.|.+|.|+-|. +-...+..|.+|+.|.|+.|.|..|.+- +.+|++|++|-|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45677888999987665 347889999999999998 6667888999999999999988876543 567788888888
Q ss_pred CCcccccccCh----hhhcCCCcCcEEecc
Q 048789 468 EYTYGVLKIPP----KVISNLKILQTLRMY 493 (724)
Q Consensus 468 ~~~~~~~~lp~----~~i~~l~~L~~L~l~ 493 (724)
..|+-...-+. .++.-|++|+.|+-.
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCc
Confidence 77654443332 346778888888644
No 236
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.28 E-value=0.025 Score=54.97 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQ 219 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 219 (724)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 457999999999999999999988762 2334677887655543
No 237
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.055 Score=60.49 Aligned_cols=173 Identities=19% Similarity=0.248 Sum_probs=98.7
Q ss_pred ccccchhhHHHHH---HHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHH
Q 048789 155 TVVGLQSTFDGVW---KCLME---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAK 222 (724)
Q Consensus 155 ~~vGr~~~~~~l~---~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 222 (724)
++.|.++.+++|. +.|.. .-++=+.++|++|+|||-||++++-.. . -. |++++.. +
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g--VP-----F~svSGS----E 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G--VP-----FFSVSGS----E 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C--Cc-----eeeechH----H
Confidence 5688776665554 55544 135678999999999999999999886 2 22 2333322 1
Q ss_pred HHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh-----------------chhhccCCCCCCCC
Q 048789 223 IQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV-----------------DLAQVGLPVSSCAS 284 (724)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~~ 284 (724)
+.. -+.. .. ..+++.+.... ...++++.+|+++... .++++.........
T Consensus 380 FvE----~~~g-------~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 380 FVE----MFVG-------VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred HHH----Hhcc-------cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 111 1111 01 22333333333 3467889999876421 12333333322222
Q ss_pred CCcEEEE-ecCChHHHh-----hccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch
Q 048789 285 SSNKIVF-TTREIEVCG-----QMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 285 g~s~ili-Ttr~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
.+.-|++ +|+..++.+ ...-+..+.++.-+.....++|.-++...... .+..++++ |+....|.+=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 2123333 555555432 11234567777778888899999888765522 34456666 88888887744
No 238
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.23 E-value=0.00093 Score=73.96 Aligned_cols=108 Identities=24% Similarity=0.236 Sum_probs=62.2
Q ss_pred CCcceEEEeeccc-cccc-ChhhhhcCCCceEEEccCC-C-------CCchhhhccccCCeeecCCCC-ccc--cchHHh
Q 048789 391 CPRLRTLFLSSNI-FHRV-NSDFFQSMASLRVLKLSYS-N-------PLLFEISKVVSLQHLDLSHSR-IER--LPIEFK 457 (724)
Q Consensus 391 ~~~Lr~L~l~~~~-~~~~-~~~~~~~l~~Lr~L~l~~~-~-------~lp~~i~~L~~L~~L~L~~~~-i~~--Lp~~i~ 457 (724)
++.|+.|.+.++. +... .......+++|+.|+++++ . ..+.....+.+|+.|+++++. +.. +..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4666777777664 2221 2344567788888888763 2 112233456778888888775 441 211122
Q ss_pred ccccCcEeecCCcccccccC-hhhhcCCCcCcEEeccccCCC
Q 048789 458 YLVNLKCLNLEYTYGVLKIP-PKVISNLKILQTLRMYECATV 498 (724)
Q Consensus 458 ~L~~L~~L~l~~~~~~~~lp-~~~i~~l~~L~~L~l~~~~~~ 498 (724)
.+.+|++|.+.+|..+.... ..+...+++|++|++.+|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 36688888877775322111 112346777888888877654
No 239
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.044 Score=60.38 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=62.5
Q ss_pred CccccchhhHHHHHHHhhc---------C---CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLME---------E---QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
+++=|-++.+.+|.+-+.- . +..-|.++|++|.|||-+|++|+... ..-|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 5667888888888876642 1 35578999999999999999999887 1334555443
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
+++..- ...+++.+.+...+.-..++|.|.+|++++
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222211 123344444444445566999999999986
No 240
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.081 Score=56.79 Aligned_cols=153 Identities=17% Similarity=0.222 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
...-|.+||++|.|||-||++|+|.. +..| ++|-.. ++ +... ...+.......+++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----EL----lNkY-------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----EL----LNKY-------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HH----HHHH-------hhhHHHHHHHHHHHh
Confidence 45678999999999999999999987 4444 333332 11 1111 122223333333334
Q ss_pred HccCceEEEeccccCh-------------hchhhccCCCCCCC--CCCcEEEEecCChHHHh--hcc---CccceeeccC
Q 048789 254 LSKKKFVLLLDDIWEL-------------VDLAQVGLPVSSCA--SSSNKIVFTTREIEVCG--QME---AHRSFKVECL 313 (724)
Q Consensus 254 l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~g~s~iliTtr~~~v~~--~~~---~~~~~~l~~L 313 (724)
-..-+|+|.+|+++.. ....++...+.... .| --||-.|...++.+ .+. -+...-+..-
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g-V~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG-VYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc-eEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 4568999999998742 11233333333322 22 44555555555422 112 2334455666
Q ss_pred ChHHHHHHHHHHhC--CCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 314 GFDDAWKLFEEKVG--RDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 314 ~~~~~~~lf~~~~~--~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
+.+|-..+++...- +.....+-+++++++. .+|.|.-
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 67788888887776 3333444556666553 3455543
No 241
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.18 E-value=0.017 Score=56.89 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCC----CCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPN----SFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
.-.++.|+|.+|+|||++|.+++-.. .... ....++|++....++..++. ++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 45699999999999999999997554 1111 13689999988877765544 344443
No 242
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.17 E-value=0.013 Score=54.79 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEE
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWI 212 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 212 (724)
...+|.+.|+.|+||||+|+.+++.. ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 44699999999999999999999988 3345555555
No 243
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.16 E-value=0.009 Score=56.98 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH-HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA-KIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
++|.|+|+.|+||||++..+..... ......+++--. ..... .-...+..+-. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t~e~-~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILTIED-PIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEEEcC-CccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 5799999999999999998887762 222333333211 11100 00001111100 0111233455667777
Q ss_pred ccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHh
Q 048789 255 SKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCG 300 (724)
Q Consensus 255 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~ 300 (724)
....=.+++|++.+.+........ ...| ..++.|+...++..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~---a~~G-~~v~~t~Ha~~~~~ 113 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTA---AETG-HLVMSTLHTNSAAK 113 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHH---HHcC-CEEEEEecCCcHHH
Confidence 777779999999776554443222 1234 56788887766543
No 244
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.16 E-value=0.043 Score=62.31 Aligned_cols=169 Identities=19% Similarity=0.175 Sum_probs=88.1
Q ss_pred ccccchhhHHHHHH---Hhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHH
Q 048789 155 TVVGLQSTFDGVWK---CLME---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAK 222 (724)
Q Consensus 155 ~~vGr~~~~~~l~~---~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 222 (724)
++.|.+..++++.+ ++.. .-.+-|.++|++|+|||++|+.+.+.. ...| +.++.+ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------D 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------H
Confidence 45676665555544 3322 113459999999999999999999876 2232 122211 1
Q ss_pred HHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh----------------chhhccCCCCCC--CC
Q 048789 223 IQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV----------------DLAQVGLPVSSC--AS 284 (724)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~ 284 (724)
+.. .. ...........+.......++++++|+++... ....+...+... ..
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 111 00 11122223333333444578999999986531 011111111111 22
Q ss_pred CCcEEEEecCChHHHhhc-----cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCC
Q 048789 285 SSNKIVFTTREIEVCGQM-----EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGL 351 (724)
Q Consensus 285 g~s~iliTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 351 (724)
+ .-+|.||...+..... .-+..+.+..-+.++-.+++..+..........++ ..+++.+.|.
T Consensus 290 ~-vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~----~~la~~t~G~ 356 (644)
T PRK10733 290 G-IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA----AIIARGTPGF 356 (644)
T ss_pred C-eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH----HHHHhhCCCC
Confidence 2 3455577765542211 12456778877888888888887755432222232 3355555553
No 245
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.16 E-value=0.006 Score=65.74 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=40.1
Q ss_pred ccccchhhHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLM------EEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+++|.++.+++|++.|. +...+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999883 3466799999999999999999999987
No 246
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.15 E-value=0.07 Score=53.15 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=94.3
Q ss_pred CccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCC-----HHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQ-----LAKIQ 224 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~-----~~~~~ 224 (724)
..++|-..+..++-+++.. +...-|.|+|+.|.|||+|......+..+... ...-|....... +..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E---~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGE---NFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCC---eEEEEEECccchhhHHHHHHHH
Confidence 4578988888888888764 56678889999999999998877776422233 333444443332 33444
Q ss_pred HHHHHHcCCCccccCCcCHHHHHHHHHHHHcc------CceEEEeccccChhc---------hhhccCCCCCCCCCCcEE
Q 048789 225 EGIAKKMGLFNESWQSKGLEEKANKIFKILSK------KKFVLLLDDIWELVD---------LAQVGLPVSSCASSSNKI 289 (724)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~g~s~i 289 (724)
+++..++.... ....+..+...++-+.|+. -+++.|+|+++.-.. +-++.. ....+- +-|
T Consensus 101 rql~~e~~~~~--k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq--s~r~Pi-cii 175 (408)
T KOG2228|consen 101 RQLALELNRIV--KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ--SARAPI-CII 175 (408)
T ss_pred HHHHHHHhhhh--eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHh--hcCCCe-EEE
Confidence 44444433222 1233444555566666643 357888888764211 111111 112233 778
Q ss_pred EEecCChHH-------HhhccCccceeeccCChHHHHHHHHHHhC
Q 048789 290 VFTTREIEV-------CGQMEAHRSFKVECLGFDDAWKLFEEKVG 327 (724)
Q Consensus 290 liTtr~~~v-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (724)
-+|||-.-. -..+.--..+-++.+.-++...+++....
T Consensus 176 g~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 176 GVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 889986432 22222222444566777777777776653
No 247
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.15 E-value=0.0021 Score=61.42 Aligned_cols=134 Identities=21% Similarity=0.171 Sum_probs=80.5
Q ss_pred CCcceEEEeecccccccCh----hhhhcCCCceEEEccCCC------CCchh-------hhccccCCeeecCCCCcc-cc
Q 048789 391 CPRLRTLFLSSNIFHRVNS----DFFQSMASLRVLKLSYSN------PLLFE-------ISKVVSLQHLDLSHSRIE-RL 452 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~----~~~~~l~~Lr~L~l~~~~------~lp~~-------i~~L~~L~~L~L~~~~i~-~L 452 (724)
...+..+++++|.+..... ..+.+-++|++.+++..- ++|++ +-+|++|+..+||.|.+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3577889999997543322 234556788888887543 45543 457899999999998655 55
Q ss_pred chH----HhccccCcEeecCCcccccccChhh-------------hcCCCcCcEEeccccCCCcccccccccCCcccchH
Q 048789 453 PIE----FKYLVNLKCLNLEYTYGVLKIPPKV-------------ISNLKILQTLRMYECATVPQARDSILFGDCRVLVE 515 (724)
Q Consensus 453 p~~----i~~L~~L~~L~l~~~~~~~~lp~~~-------------i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 515 (724)
|+. |.+-+.|.||.+++|. +..+.-+- ...-+.|+......|.... +.......
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen--------gs~~~~a~ 179 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN--------GSKELSAA 179 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc--------CcHHHHHH
Confidence 544 5667889999998883 33322111 2345667777665543221 11111122
Q ss_pred HhhcCCCCCeEEEEEcch
Q 048789 516 ELLCLEHLSVFTITLNNF 533 (724)
Q Consensus 516 ~L~~L~~L~~L~i~~~~~ 533 (724)
.+.+-.+|+.+.+..+.+
T Consensus 180 ~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 180 LLESHENLKEVKIQQNGI 197 (388)
T ss_pred HHHhhcCceeEEeeecCc
Confidence 233445666777666655
No 248
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.18 Score=47.93 Aligned_cols=163 Identities=17% Similarity=0.251 Sum_probs=89.6
Q ss_pred ccc-chhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 156 VVG-LQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 156 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++| -++.+++|.+.+.- .+++-+.++|++|.|||-||+.|+++- .+-|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 455 56677777665531 367789999999999999999999875 3445666654
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh------------c--------hhhccCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV------------D--------LAQVGLPVS 280 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~--------~~~l~~~~~ 280 (724)
++.+..+ + .+ ..+...+.-.. ..-+-++..|++++.. + +.++ ..|.
T Consensus 216 elvqk~i---g-eg--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql-dgfe 282 (404)
T KOG0728|consen 216 ELVQKYI---G-EG--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-DGFE 282 (404)
T ss_pred HHHHHHh---h-hh--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc-cccc
Confidence 1211111 1 00 11222222211 2356677888876421 0 1111 1122
Q ss_pred CCCCCCcEEEEecCChHHHhh-----ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHH
Q 048789 281 SCASSSNKIVFTTREIEVCGQ-----MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVA 345 (724)
Q Consensus 281 ~~~~g~s~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~ 345 (724)
. .+. -+||+.|..-++.+. ..-+..++..+-+++.-.++++-+.-.-+....-++..++.++.
T Consensus 283 a-tkn-ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 283 A-TKN-IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred c-ccc-eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 1 233 688888877666432 12345677777777777777766654333233345555555443
No 249
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.07 E-value=0.049 Score=58.00 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...++.++|.+|+||||.|..++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999998888775
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.07 E-value=0.044 Score=53.70 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
...+.++|.+|+|||+||..+++... ..-..+++++ ..++...+-..... ...+.+ .+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~~~~~~----~~l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----SETSEE----QLLNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----ccccHH----HHHHHh
Confidence 45789999999999999999999883 2223455553 34455444433211 111222 233334
Q ss_pred ccCceEEEeccccC
Q 048789 255 SKKKFVLLLDDIWE 268 (724)
Q Consensus 255 ~~k~~LlVlDdv~~ 268 (724)
. +.=+||+||+..
T Consensus 161 ~-~~dlLvIDDig~ 173 (244)
T PRK07952 161 S-NVDLLVIDEIGV 173 (244)
T ss_pred c-cCCEEEEeCCCC
Confidence 4 344889999965
No 251
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.07 E-value=0.023 Score=56.23 Aligned_cols=92 Identities=17% Similarity=0.321 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC-cEEEEEEeCCcC-CHHHHHHHHHHHcCCCcc----ccCCcCHH---
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF-DFVIWIVVSKDL-QLAKIQEGIAKKMGLFNE----SWQSKGLE--- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 244 (724)
.-.-++|+|..|+|||||++.+++.. +.+| +.++++-+++.. ...++.+.+...=..... .....+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34579999999999999999999987 2233 456677776654 455666665543111100 00111111
Q ss_pred ---HHHHHHHHHH--c-cCceEEEeccccC
Q 048789 245 ---EKANKIFKIL--S-KKKFVLLLDDIWE 268 (724)
Q Consensus 245 ---~~~~~l~~~l--~-~k~~LlVlDdv~~ 268 (724)
...-.+-+++ + ++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122333444 3 8999999999854
No 252
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.06 E-value=0.031 Score=56.48 Aligned_cols=88 Identities=25% Similarity=0.338 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
..++++|+|++|+||||++..++..+. .+..-..+..|+.... ......+......++.+.. ...+..++...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH
Confidence 356999999999999999999988762 1211124455554322 1223333333444443321 22334444444433
Q ss_pred HHccCceEEEeccc
Q 048789 253 ILSKKKFVLLLDDI 266 (724)
Q Consensus 253 ~l~~k~~LlVlDdv 266 (724)
+.+ .=++++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 233 346777753
No 253
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.022 Score=56.17 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcc-CCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFL-DTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
.++|.++|++|.|||+|.++++.+.. +....+....-+.++. ..+....+.+ ..+-...+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 57999999999999999999999983 1223343333343322 2222222222 334556677777887
Q ss_pred HccCce--EEEeccccC
Q 048789 254 LSKKKF--VLLLDDIWE 268 (724)
Q Consensus 254 l~~k~~--LlVlDdv~~ 268 (724)
+.++.. ++.+|+|..
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 777654 456788864
No 254
>PRK06547 hypothetical protein; Provisional
Probab=96.05 E-value=0.01 Score=54.95 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=28.6
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 166 VWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+...+......+|+|.|.+|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444556778899999999999999999998875
No 255
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.05 E-value=0.038 Score=54.88 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=42.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcc---CCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFL---DTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~---~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.-.+.=|+|.+|+|||.|+.+++-... ...+.=..++|++-...|+++++. +|+++.+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 345999999999999999988765431 111223579999999999888875 56766543
No 256
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.04 E-value=0.041 Score=64.59 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME---------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|-+..++.+.+.+.. ....++.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4688999999998887752 123467899999999999999999876
No 257
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.03 E-value=0.33 Score=49.73 Aligned_cols=176 Identities=7% Similarity=0.026 Sum_probs=89.9
Q ss_pred hHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC-----c
Q 048789 162 TFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF-----N 235 (724)
Q Consensus 162 ~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----~ 235 (724)
....+.+.+..+. .....+.|+.|+||+++|+.++....- ..... ...+..-.-.+.+...-..+ .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3455666666655 467889999999999999999887621 11000 00001111111111100000 0
Q ss_pred cccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCC-hHHHhhc-cCcc
Q 048789 236 ESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTRE-IEVCGQM-EAHR 306 (724)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~-~~v~~~~-~~~~ 306 (724)
........++.. .+.+.+ .+++=++|+|+++.- .....+...+..-..+ ..+|++|.+ ..+...+ ....
T Consensus 82 ~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~-~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 82 IDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPN-TYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChHhCchHHHhhce
Confidence 000112333333 233332 245567889998653 2222222222111223 555555554 4443222 2345
Q ss_pred ceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 307 SFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 307 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
.+.+.+++.++..+.+....... ...+...+..++|.|..+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 78899999999988887754211 112456678899999644
No 258
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.34 Score=49.50 Aligned_cols=175 Identities=10% Similarity=0.026 Sum_probs=89.3
Q ss_pred hHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC------
Q 048789 162 TFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF------ 234 (724)
Q Consensus 162 ~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~------ 234 (724)
..+.+.+.+..++ ...+.+.|+.|+||+++|+.+....--...... ..+.. .--+.+...-..+
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-----~Cg~C----~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-----ACGFC----HSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCCC----HHHHHHHcCCCCCEEEEec
Confidence 3455666665554 457899999999999999998887621110000 00000 1111111100000
Q ss_pred ccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChHHHhhc-cCc
Q 048789 235 NESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIEVCGQM-EAH 305 (724)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~v~~~~-~~~ 305 (724)
.........++.. .+.+.+ .+++=++|+|++..- ...+.+...+..-..+ +.+|+ |++...+...+ ...
T Consensus 82 ~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 82 EKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPN-CLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred CcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChhhChHHHHhcc
Confidence 0000112333333 233333 234457888988653 2233222222111223 44444 45444443332 234
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 306 RSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
..+.+.+++.++..+.+..... + ....+++.++|.|+.+..+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~--------~---~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQGI--------T---VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcCC--------c---hHHHHHHHcCCCHHHHHHH
Confidence 5788999999999888765311 1 1356788999999876544
No 259
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.022 Score=53.77 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=44.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
.+-+|+|-|.+|+||||+|+.++..+ +...-.. ++...-+. ..-.....+......+...+.+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999998 2221111 12111110 000001111112222223455667777888888
Q ss_pred HccCc
Q 048789 254 LSKKK 258 (724)
Q Consensus 254 l~~k~ 258 (724)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 260
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0032 Score=60.26 Aligned_cols=58 Identities=34% Similarity=0.390 Sum_probs=28.8
Q ss_pred hhcCCCceEEEccCCC-----CCchhhhccccCCeeecCCCCccc---cchHHhccccCcEeecCCc
Q 048789 412 FQSMASLRVLKLSYSN-----PLLFEISKVVSLQHLDLSHSRIER---LPIEFKYLVNLKCLNLEYT 470 (724)
Q Consensus 412 ~~~l~~Lr~L~l~~~~-----~lp~~i~~L~~L~~L~L~~~~i~~---Lp~~i~~L~~L~~L~l~~~ 470 (724)
|..|++|+.|+++.+. .++-....+++|++|++++|+++- ++ ....|.+|..|++.+|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNC 126 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccC
Confidence 3445555566665552 333334444556666666555442 21 2344555555555555
No 261
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.97 E-value=0.0032 Score=60.25 Aligned_cols=85 Identities=25% Similarity=0.401 Sum_probs=57.0
Q ss_pred hcCCCceEEEccCCC-CCchhhhccccCCeeecCCC--Ccc-ccchHHhccccCcEeecCCccc--ccccChhhhcCCCc
Q 048789 413 QSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHS--RIE-RLPIEFKYLVNLKCLNLEYTYG--VLKIPPKVISNLKI 486 (724)
Q Consensus 413 ~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~--~i~-~Lp~~i~~L~~L~~L~l~~~~~--~~~lp~~~i~~l~~ 486 (724)
-.+..|..|++.++. .--..+-.|++|++|.++.| .+. .++....++.+|++|++++|+. +..+++ ...+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcc
Confidence 344455555555555 22233446788999999988 444 6776677779999999998852 334444 567788
Q ss_pred CcEEeccccCCCc
Q 048789 487 LQTLRMYECATVP 499 (724)
Q Consensus 487 L~~L~l~~~~~~~ 499 (724)
|..|+++.|+...
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8888888776543
No 262
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.94 E-value=0.035 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999877
No 263
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.93 E-value=0.036 Score=56.68 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=43.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCC---CCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDT---PNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF 234 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 234 (724)
.-+++-|+|.+|+|||+++.+++-...-. ...-..++|++....|+++++.+ +++.++..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 45689999999999999998876433100 11224789999999888888764 56666543
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.93 E-value=0.046 Score=50.10 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL 218 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~ 218 (724)
++.|+|.+|+||||++..+..... ..-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 468999999999999999998872 234567787776554
No 265
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.90 E-value=0.02 Score=62.60 Aligned_cols=72 Identities=26% Similarity=0.345 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
.-++..++|++|+||||||+.++.+. .| .++=|+.|+......+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 35699999999999999999999886 22 3556777777777777666665543221 1
Q ss_pred H--ccCceEEEeccccC
Q 048789 254 L--SKKKFVLLLDDIWE 268 (724)
Q Consensus 254 l--~~k~~LlVlDdv~~ 268 (724)
+ .+++.-||+|+++-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 25777889998865
No 266
>PRK04296 thymidine kinase; Provisional
Probab=95.90 E-value=0.012 Score=55.66 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILS 255 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (724)
.++.|+|..|.||||+|...+.+.. ..-..++.+. ..++.......++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999888872 2223333332 1112222233455555533221112334455555554 33
Q ss_pred cCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChH
Q 048789 256 KKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIE 297 (724)
Q Consensus 256 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~ 297 (724)
++.-++|+|++.-. .+..++...+. ..| ..|++|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g-~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLG-IPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcC-CeEEEEecCcc
Confidence 34558999998532 22222222211 234 78999988744
No 267
>PRK07667 uridine kinase; Provisional
Probab=95.89 E-value=0.012 Score=55.98 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=30.3
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 163 FDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+.|.+.+.. ++..+|+|-|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666654 455799999999999999999999887
No 268
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.86 E-value=0.3 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.++|..|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988776
No 269
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.85 E-value=0.024 Score=60.36 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++||++.++.+...+..++ -|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 358999999999988876543 68899999999999999999876
No 270
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.85 E-value=0.063 Score=49.05 Aligned_cols=26 Identities=38% Similarity=0.391 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-..+.++|++|.||||+.+.+|...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 44689999999999999999999886
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.046 Score=54.12 Aligned_cols=75 Identities=28% Similarity=0.344 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
+..-+.++|.+|+|||.||.++.+... +..+. +.+++ ..++...+....... . ....+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~s-v~f~~------~~el~~~Lk~~~~~~-------~---~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGIS-VLFIT------APDLLSKLKAAFDEG-------R---LEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCe-EEEEE------HHHHHHHHHHHHhcC-------c---hHHHHHHH
Confidence 667899999999999999999999983 33333 34443 445555555443210 1 11112221
Q ss_pred HccCceEEEeccccC
Q 048789 254 LSKKKFVLLLDDIWE 268 (724)
Q Consensus 254 l~~k~~LlVlDdv~~ 268 (724)
+ .+-=||||||+-.
T Consensus 165 l-~~~dlLIiDDlG~ 178 (254)
T COG1484 165 L-KKVDLLIIDDIGY 178 (254)
T ss_pred h-hcCCEEEEecccC
Confidence 1 2334899999864
No 272
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.81 E-value=0.041 Score=56.12 Aligned_cols=115 Identities=23% Similarity=0.240 Sum_probs=63.2
Q ss_pred cchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 158 GLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 158 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
++........+++.. ...+-+.++|..|+|||.||..+++... ...+. +.++++ .+++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEH------HHHHHHHHHHHhc
Confidence 444444445555543 1346799999999999999999999983 23333 445543 3455555444321
Q ss_pred CccccCCcCHHHHHHHHHHHHccCceEEEeccccCh--hchh--hccCCC-CCC-CCCCcEEEEecC
Q 048789 234 FNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL--VDLA--QVGLPV-SSC-ASSSNKIVFTTR 294 (724)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~--~l~~~~-~~~-~~g~s~iliTtr 294 (724)
.+..+. + +.+ .+-=||||||+..+ ..|. ++...+ ... ..+ -.+++||.
T Consensus 206 -------~~~~~~---l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~-~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEK---I-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEE-LPTFFTSN 259 (306)
T ss_pred -------CcHHHH---H-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCC-CeEEEECC
Confidence 112222 2 222 24558999999643 3343 232222 211 123 45777775
No 273
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.79 E-value=0.047 Score=54.45 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 168 KCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 168 ~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+++...+..+|.|.|.+|+|||||+..+.+..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445678999999999999999999999987
No 274
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.1 Score=57.68 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=85.6
Q ss_pred ccccchhhHHHHHHHhh---c----------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 155 TVVGLQSTFDGVWKCLM---E----------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---~----------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++.|.+..++.+.+.+. . ...+.+.++|++|.|||+||+++++.. ...|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----
Confidence 45566665555544332 1 245689999999999999999999965 344433221 1
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc-------------hhhccCCCCCCCCCC-c
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD-------------LAQVGLPVSSCASSS-N 287 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~g~-s 287 (724)
+ ++.+. ...........+....+...+.+.+|++..... ..++...+....... .
T Consensus 311 ~----l~sk~-------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 E----LLSKW-------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred H----Hhccc-------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 1 11110 122333334444444467899999999875321 112222222112220 2
Q ss_pred EEEEecCChHHHhh-----ccCccceeeccCChHHHHHHHHHHhCCCC
Q 048789 288 KIVFTTREIEVCGQ-----MEAHRSFKVECLGFDDAWKLFEEKVGRDT 330 (724)
Q Consensus 288 ~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 330 (724)
.||-+|........ ..-+..+.+.+-+.++..+.|..+.....
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 34445544433221 12245678888899999999999886433
No 275
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.76 E-value=0.083 Score=52.03 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
.-.++.|.|.+|+|||++|.++..... ..-+.++||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHH
Confidence 457999999999999999998766541 2346788888765 455555553
No 276
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.071 Score=57.53 Aligned_cols=186 Identities=15% Similarity=0.171 Sum_probs=97.9
Q ss_pred ccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 155 TVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
+++|-+.-...|.+.+..++ ..-....|+-|+||||+|+.++.... -... ....++..-...+.|...-..
T Consensus 17 evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN-C~~~-------~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN-CENG-------PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc-CCCC-------CCCCcchhhhhhHhhhcCCcc
Confidence 57999988888888887764 34667889999999999999988772 1110 111111222222222221000
Q ss_pred Cc---cccCCcCHHHHHHHHHHHH-----ccCceEEEeccccC--hhchhhccCCCCCCCCCCcE-EEEecCChHHH-hh
Q 048789 234 FN---ESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWE--LVDLAQVGLPVSSCASSSNK-IVFTTREIEVC-GQ 301 (724)
Q Consensus 234 ~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~g~s~-iliTtr~~~v~-~~ 301 (724)
+. +.-.....++.. .|.+.. .++.=+.|+|+|.- ...|..+...+..--.. -. |+.||-.+.+. ..
T Consensus 89 DviEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~h-V~FIlATTe~~Kip~TI 166 (515)
T COG2812 89 DVIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSH-VKFILATTEPQKIPNTI 166 (515)
T ss_pred cchhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccC-eEEEEecCCcCcCchhh
Confidence 00 000112223322 222222 34555889999964 34455443332211122 33 44455555542 22
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
......|.+..++.++-...+...+........ .+...-|++...|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 334557888999988777777766654332222 3334555666666443
No 277
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.73 E-value=0.053 Score=52.80 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=70.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC-----cCCHHHHHHHHHHHcCCCccc-----cCCcCH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK-----DLQLAKIQEGIAKKMGLFNES-----WQSKGL 243 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~~ 243 (724)
+-.+++++|..|.||||+++.+..-. +.. ...+++.-.+ .....+...++++.++...+. ..-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45699999999999999999998876 222 2233332111 222344566677776654321 111111
Q ss_pred HHHHHHHHHHHccCceEEEeccccChh------chhhccCCCCCCCCCCcEEEEecCChHHHhhccC
Q 048789 244 EEKANKIFKILSKKKFVLLLDDIWELV------DLAQVGLPVSSCASSSNKIVFTTREIEVCGQMEA 304 (724)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~~~~ 304 (724)
+...=.+.+.+.-++=++|.|+--+.- +...+...+.. ..| -..+..|.+-.++..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~-lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELG-LTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhC-CeEEEEEEEHHhhhhhcc
Confidence 212223455677888999999865421 11122111111 123 567777888877766543
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.013 Score=51.80 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-|.|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999988
No 279
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.71 E-value=0.021 Score=53.24 Aligned_cols=74 Identities=27% Similarity=0.345 Sum_probs=42.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
...-+.++|..|+|||.||..+.+.... .. ..+.|+. ..+++..+-. .. ........ .+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g-~~v~f~~------~~~L~~~l~~----~~---~~~~~~~~----~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KG-YSVLFIT------ASDLLDELKQ----SR---SDGSYEEL----LKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEE------HHHHHHHHHC----CH---CCTTHCHH----HHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CC-cceeEee------cCceeccccc----cc---cccchhhh----cCc
Confidence 3457999999999999999999988732 22 2345554 3444444432 11 11122222 223
Q ss_pred HccCceEEEeccccC
Q 048789 254 LSKKKFVLLLDDIWE 268 (724)
Q Consensus 254 l~~k~~LlVlDdv~~ 268 (724)
+. +-=||||||+-.
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 33 345788999864
No 280
>PHA00729 NTP-binding motif containing protein
Probab=95.68 E-value=0.016 Score=55.41 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=28.4
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 165 GVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555566789999999999999999999875
No 281
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.033 Score=60.72 Aligned_cols=74 Identities=26% Similarity=0.231 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC--CHHHHHHHHHHHcCCCccccCCcCHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL--QLAKIQEGIAKKMGLFNESWQSKGLEEKANKIF 251 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (724)
...-|.|.|..|+|||+||+.+++.+. +...-.+..|+.+.-. ..+.++. .+...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk-------------------~l~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQK-------------------FLNNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHH-------------------HHHHHHH
Confidence 345789999999999999999999983 6666667777665431 1222221 1223344
Q ss_pred HHHccCceEEEeccccC
Q 048789 252 KILSKKKFVLLLDDIWE 268 (724)
Q Consensus 252 ~~l~~k~~LlVlDdv~~ 268 (724)
+++...+-++||||++.
T Consensus 489 e~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHhhCCcEEEEcchhh
Confidence 56667888999999874
No 282
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.63 Score=48.14 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=51.6
Q ss_pred cCceEEEeccccCh--hchhhccCCCCCCCCCCcE-EEEecCChHHHhhc-cCccceeeccCChHHHHHHHHHHhCCCCC
Q 048789 256 KKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNK-IVFTTREIEVCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTL 331 (724)
Q Consensus 256 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~-iliTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 331 (724)
+++=++|+|+++.- .....+...+..-..+ +. |++|++...+...+ .-...+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPG-TVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcC-cEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 34558888998652 3333332222211233 54 44555545543322 23457889999999999888764 11
Q ss_pred CCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 332 DTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 332 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
+. ...++..++|.|..+..+
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 233577889999765543
No 283
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.64 E-value=0.0098 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.758 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 048789 178 VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|.|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998884
No 284
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.089 Score=54.73 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=36.2
Q ss_pred cccchhhHHHHHHHhhc-CCceE-EEEEcCCCCcHHHHHHHHHHhc
Q 048789 156 VVGLQSTFDGVWKCLME-EQMGI-VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++|-+....++..+... +.... +.++|++|+||||+|..+.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 56777778888888774 44555 9999999999999999999987
No 285
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.64 E-value=0.064 Score=55.33 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcc-C--CCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFL-D--TPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF 234 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~-~--~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 234 (724)
.-.++-|+|.+|+|||+|+.+++-... . ....-..++|++....|+++++.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 456888999999999999998764331 1 112235789999999999888765 56666543
No 286
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.63 E-value=0.65 Score=45.20 Aligned_cols=206 Identities=12% Similarity=0.142 Sum_probs=114.6
Q ss_pred cccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCC---CCCCcEEEEEEeCCc---------------
Q 048789 156 VVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDT---PNSFDFVIWIVVSKD--------------- 217 (724)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~--------------- 217 (724)
+.++++....+......++..-..++|+.|.||-|.+..+.++.-.+ +-.-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 56777777777777666778899999999999999888887776211 223344455443322
Q ss_pred ------CCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHcc-Cce-EEEeccccCh--hchhhccCCCCCCCCCCc
Q 048789 218 ------LQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSK-KKF-VLLLDDIWEL--VDLAQVGLPVSSCASSSN 287 (724)
Q Consensus 218 ------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~-LlVlDdv~~~--~~~~~l~~~~~~~~~g~s 287 (724)
..-+-+.++++++++.... .+ ..+ +.| ++|+..+++. +.-..++.......+. +
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q------ie---------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~-~ 158 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ------IE---------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN-C 158 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc------hh---------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC-c
Confidence 1123344444444432210 00 011 233 4455544431 1111121111111233 6
Q ss_pred EEEEecCChH-HHhhcc-CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcC
Q 048789 288 KIVFTTREIE-VCGQME-AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASR 365 (724)
Q Consensus 288 ~iliTtr~~~-v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~ 365 (724)
|+|+...+.. +...+. ..-.+++..-+++|-...+++.+-.....-+ .+++.+|+++++|.-.-+..+-..++-+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 6666443321 111111 2335788889999999999888766554443 7789999999999876555444444322
Q ss_pred ----------CChhHHHHHHHHHhh
Q 048789 366 ----------KTPREWEHAIEVLRC 380 (724)
Q Consensus 366 ----------~~~~~w~~~~~~l~~ 380 (724)
-..-+|+-+...+..
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHH
Confidence 134578877665443
No 287
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.62 E-value=0.014 Score=53.65 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=56.8
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhh-ccccCCeeecCCCCccccch--HHhccccCcEeec
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEIS-KVVSLQHLDLSHSRIERLPI--EFKYLVNLKCLNL 467 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~-~L~~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~l 467 (724)
....+++.+|.+.... .|..++.|..|.+.+|+ .+-..+. .+++|..|.|.+|++.+|-. .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445666666543332 25566666666666666 3332333 35567777777776665532 2455667777776
Q ss_pred CCcccccccC---hhhhcCCCcCcEEecccc
Q 048789 468 EYTYGVLKIP---PKVISNLKILQTLRMYEC 495 (724)
Q Consensus 468 ~~~~~~~~lp---~~~i~~l~~L~~L~l~~~ 495 (724)
-+|+. ...+ .-++.++++|++|++...
T Consensus 121 l~Npv-~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPV-EHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCch-hcccCceeEEEEecCcceEeehhhh
Confidence 66532 1111 123677888888888753
No 288
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.61 E-value=0.018 Score=56.41 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|+|.|..|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999887
No 289
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.60 E-value=0.01 Score=56.47 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=46.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCc---EEEEEEeCCcCCHHHHHHHHHHHcC--CCccccCCcCHHHHHHHHH
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFD---FVIWIVVSKDLQLAKIQEGIAKKMG--LFNESWQSKGLEEKANKIF 251 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~---~~~wv~v~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~l~ 251 (724)
||+|.|.+|+||||+|+.+...+. +.... .....+............. -.... ........-+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999983 12222 2333333332222222221 11111 1111124566777777777
Q ss_pred HHHccCceEEE
Q 048789 252 KILSKKKFVLL 262 (724)
Q Consensus 252 ~~l~~k~~LlV 262 (724)
...+++..-+-
T Consensus 78 ~L~~g~~i~~p 88 (194)
T PF00485_consen 78 ALKNGGSIEIP 88 (194)
T ss_dssp HHHTTSCEEEE
T ss_pred HHhCCCccccc
Confidence 76666665443
No 290
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.072 Score=55.18 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
+.++|+++|.+|+||||++..++..+. ...+ .+..++.... ....+-+....+.++.+.. ...+...+.+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 357999999999999999999988772 2222 3334443322 1222333344444443321 23345555554444
Q ss_pred HHcc-CceEEEecccc
Q 048789 253 ILSK-KKFVLLLDDIW 267 (724)
Q Consensus 253 ~l~~-k~~LlVlDdv~ 267 (724)
.-.. +.=++++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23467777653
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.58 E-value=0.069 Score=49.98 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998876
No 292
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.55 E-value=0.082 Score=53.15 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=44.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC--ccccCCcCHHHHHHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF--NESWQSKGLEEKANKI 250 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~l 250 (724)
....+|+|.|..|+||||+|+.+..-.. ....-..+..++...-......... .+.. .+.....+.+.+.+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~-~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS-RWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKFL 134 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh-hcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHHH
Confidence 3567999999999999999988766551 1011113444444443332332222 2211 1112455666676666
Q ss_pred HHHHccC
Q 048789 251 FKILSKK 257 (724)
Q Consensus 251 ~~~l~~k 257 (724)
.....++
T Consensus 135 ~~Lk~g~ 141 (290)
T TIGR00554 135 SDLKSGK 141 (290)
T ss_pred HHHHCCC
Confidence 6665554
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.54 E-value=0.082 Score=52.02 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc----------------
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---------------- 237 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---------------- 237 (724)
.-.++.|+|.+|+|||++|.++..... ..-..++|++.... +.++.+++ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 457999999999999999999865541 23457888888654 45555553 333321110
Q ss_pred --cCCcCHHHHHHHHHHHHcc-CceEEEecccc
Q 048789 238 --WQSKGLEEKANKIFKILSK-KKFVLLLDDIW 267 (724)
Q Consensus 238 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 267 (724)
......++....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122335566666666654 55588889874
No 294
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.53 E-value=0.076 Score=54.84 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCC---CCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTP---NSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
...++-|+|.+|+|||+++.+++-...... ..=..++||+....+++.++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 457899999999999999999886641100 0114799999988888877654 445554
No 295
>PRK08233 hypothetical protein; Provisional
Probab=95.52 E-value=0.013 Score=55.21 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|.|.+|+||||+|+.+...+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999887
No 296
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.52 E-value=0.095 Score=53.21 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKIF 251 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (724)
-+++-|+|..|+||||||..+.... ...-..++|++....+++.. +++++.+.+. ..+...++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 4699999999999999999988876 23356799999988876644 3445544332 12345566666666
Q ss_pred HHHcc-CceEEEeccccC
Q 048789 252 KILSK-KKFVLLLDDIWE 268 (724)
Q Consensus 252 ~~l~~-k~~LlVlDdv~~ 268 (724)
+.++. .--++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 66654 345888898844
No 297
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.52 E-value=0.086 Score=54.08 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcc-C--CCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFL-D--TPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~-~--~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.-.++.|+|.+|+|||+++..++.... . ....-..++|++....++..++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 467999999999999999998876431 0 1112246799998887887764 445565544
No 298
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.51 E-value=0.012 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|.|.|..|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999884
No 299
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.49 E-value=0.0048 Score=35.04 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=12.9
Q ss_pred cCCeeecCCCCccccchHHhc
Q 048789 438 SLQHLDLSHSRIERLPIEFKY 458 (724)
Q Consensus 438 ~L~~L~L~~~~i~~Lp~~i~~ 458 (724)
+|++|+|++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 300
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.48 E-value=0.12 Score=51.66 Aligned_cols=126 Identities=15% Similarity=0.053 Sum_probs=67.7
Q ss_pred HHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE---eCCcCCHHHHHHHHHHHcCC-Cccc
Q 048789 163 FDGVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV---VSKDLQLAKIQEGIAKKMGL-FNES 237 (724)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~~i~~~l~~-~~~~ 237 (724)
.+.++..+.+ .....++|+|..|.||||+.+.+..... .....+++. +.......++. ..... +...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~~ei~----~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDERSEIA----GCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhHHHHH----HHhccccccc
Confidence 4444444443 4467899999999999999999998762 112223321 11111122222 22211 1100
Q ss_pred c----CCcCHHHHHHHHHHHHc-cCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHh
Q 048789 238 W----QSKGLEEKANKIFKILS-KKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCG 300 (724)
Q Consensus 238 ~----~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~ 300 (724)
. ...+.......+...+. ..+-++++|++.....+..+...+. .| ..+|+||....+..
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G-~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AG-VSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CC-CEEEEEechhHHHH
Confidence 0 00111111223333333 5788999999977665555544432 35 78999999766643
No 301
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.48 E-value=0.093 Score=52.58 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCccc-cCCcCHHH-HHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNES-WQSKGLEE-KANK 249 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~-~~~~ 249 (724)
.+.++|.++|++|+||||.+..++..+ . ..-..+..++.... ....+-+....+..+.+.-. ....+... ..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 346799999999999999999998877 2 22235555654421 11223334445555432110 01122222 2233
Q ss_pred HHHHHccCceEEEecccc
Q 048789 250 IFKILSKKKFVLLLDDIW 267 (724)
Q Consensus 250 l~~~l~~k~~LlVlDdv~ 267 (724)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444344445577888753
No 302
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.68 Score=47.96 Aligned_cols=172 Identities=13% Similarity=0.116 Sum_probs=89.8
Q ss_pred hHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCC-CCC-cE-----EEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 162 TFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTP-NSF-DF-----VIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 162 ~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f-~~-----~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.-+++.+.+..++ ...+.+.|+.|+||+++|..++....-.. ..- .| +-++..+..+|...+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 4566777776654 55788999999999999999887762110 000 00 001111111111100 00
Q ss_pred CccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hc----hhhccCCCCCCCCCCcEEEEecCC-hHHHhh
Q 048789 234 FNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VD----LAQVGLPVSSCASSSNKIVFTTRE-IEVCGQ 301 (724)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~----~~~l~~~~~~~~~g~s~iliTtr~-~~v~~~ 301 (724)
.. .......++..+ +.+.+ .+++=++|+|+++.- .. +..+..| ..+ +.+|++|.+ ..+...
T Consensus 82 ~~-~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP----p~~-t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 82 EK-GKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP----PEN-TWFFLACREPARLLAT 154 (334)
T ss_pred cc-ccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC----CCC-eEEEEEECChhhChHH
Confidence 00 001123333332 33322 345668899988642 22 2333333 223 555555544 444432
Q ss_pred c-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 302 M-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 302 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
+ .-...+.+.+++.++....+.+..+. + .+-+..++..++|.|..+.
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~~~-------~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREVTM-------S-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHccCC-------C-HHHHHHHHHHcCCCHHHHH
Confidence 2 23446788999999988877654221 1 2235678899999996544
No 303
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.42 E-value=0.63 Score=48.51 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE-eCCcCCHHHHHHHHHHHcCCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV-VSKDLQLAKIQEGIAKKMGLF 234 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~l~~~ 234 (724)
.+.||-.+|.-|.||||-|-.+++.+. . ..+. +.-|+ -...+..-+-++.+.++++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk-k-~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK-K-KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH-H-cCCc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence 467999999999999999999999883 2 2222 22233 234455666677788877654
No 304
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.42 E-value=0.13 Score=59.33 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
+..++.|+|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 4579999999999999999998765
No 305
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.41 E-value=0.046 Score=49.36 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE---eCCcCCHHHHHHHHHHHc-----CCCccccCCcCH----
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV---VSKDLQLAKIQEGIAKKM-----GLFNESWQSKGL---- 243 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~---- 243 (724)
+.|-|++..|.||||.|-...-+.. ...+ .+.++. -........+++.+- .+ +.. ......+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~-~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRG-FFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCC-CccCCCChHHHH
Confidence 5788999999999999988877762 2222 333333 222233333333320 00 100 00001111
Q ss_pred ---HHHHHHHHHHHcc-CceEEEeccccCh-----hchhhccCCCCCCCCCCcEEEEecCChH
Q 048789 244 ---EEKANKIFKILSK-KKFVLLLDDIWEL-----VDLAQVGLPVSSCASSSNKIVFTTREIE 297 (724)
Q Consensus 244 ---~~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~g~s~iliTtr~~~ 297 (724)
.+..+..++.+.. +-=|+|||++-.. .+.+.+...+.....+ .-+|+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~-~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPED-LELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCC-CEEEEECCCCC
Confidence 1122334444444 4459999998643 1223333333333334 78999999853
No 306
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.41 E-value=0.015 Score=56.06 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 307
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.41 E-value=0.058 Score=48.02 Aligned_cols=112 Identities=9% Similarity=0.101 Sum_probs=82.8
Q ss_pred CCcccCccchhhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 048789 2 GNVCSPSFSCDDSVSHCLDCSVRKAGYICHLQDNLDALQRELQMLIEERNDVRVRVIVAEQQQMKRLERVQGWLSRVEKV 81 (724)
Q Consensus 2 ~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~~~~~~~~~~Wl~~lr~~ 81 (724)
|+++ .+||++.+++.+...+.+.......++.-.+.|.+.++.|.-+++++... +...+..-+.=++++.+.
T Consensus 3 ~eL~-~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~-------~~eld~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 3 AELV-GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL-------NVELDRPRQEEIERLKEL 74 (147)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-------hhhcCCchhHHHHHHHHH
Confidence 4455 78888999999999999988888889999999999999999988885432 111233346778889999
Q ss_pred HHHHHHHHhhChhhhhhcccCCCCCccchhhchHhHHHHHHHHHHHHHH
Q 048789 82 ESRVGKLIRKSPQQVEKICLGGFCSNSCKSSYKFGKKVVKALRLVQSLR 130 (724)
Q Consensus 82 ~yd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 130 (724)
..++.+++..|..-. ..++...++.+++|.++.+.+....
T Consensus 75 L~~g~~LV~k~sk~~---------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 75 LEKGKELVEKCSKVR---------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHhcccc---------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 999999998874211 1244556677888888777776543
No 308
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.39 E-value=0.027 Score=48.12 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=35.2
Q ss_pred ccccchhhHHHHHHHhhc-------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLME-------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|..-..+.+++.+.+ .++-|++.+|..|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467777666666666543 356799999999999999999998884
No 309
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.36 E-value=0.037 Score=57.76 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHhhcC--------------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEE--------------QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.++.++.+.-.+... ..+.|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789888888876555421 24689999999999999999999987
No 310
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.069 Score=55.57 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC-cCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK-DLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
-+++.++|+.|+||||++..+..... .+.....+..+.... .....+-++...+.++.+.. ...+..++...+. .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLALA-E 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHHH-H
Confidence 46999999999999999999988761 111123455555332 23445556666666665432 1222223333332 3
Q ss_pred HccCceEEEecccc
Q 048789 254 LSKKKFVLLLDDIW 267 (724)
Q Consensus 254 l~~k~~LlVlDdv~ 267 (724)
+.++ -++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 3444 456688874
No 311
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.30 E-value=0.063 Score=56.25 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc---CCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW---QSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (724)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++. .-+..++...+.. ...+.+++.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 356999999999999999999988762 22346778775433 33332 2234555432211 122333333333
Q ss_pred HHHHccCceEEEecccc
Q 048789 251 FKILSKKKFVLLLDDIW 267 (724)
Q Consensus 251 ~~~l~~k~~LlVlDdv~ 267 (724)
. ..+.-++|+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2356678888873
No 312
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.30 E-value=0.23 Score=54.56 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=70.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC-----cEEEEEEeCCc---------------C-C-HHHHHHHHHHHc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF-----DFVIWIVVSKD---------------L-Q-LAKIQEGIAKKM 231 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-----~~~~wv~v~~~---------------~-~-~~~~~~~i~~~l 231 (724)
.-..|+|+|+.|+|||||.+.+........+.. -.+.++.-... + + .+.-.+..+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 445899999999999999999977652221111 12233321110 0 1 134445555555
Q ss_pred CCCcccc----CCcCHHH-HHHHHHHHHccCceEEEeccccChhc---hhhccCCCCCCCCCCcEEEEecCChHHHhhcc
Q 048789 232 GLFNESW----QSKGLEE-KANKIFKILSKKKFVLLLDDIWELVD---LAQVGLPVSSCASSSNKIVFTTREIEVCGQME 303 (724)
Q Consensus 232 ~~~~~~~----~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~~~~~~~g~s~iliTtr~~~v~~~~~ 303 (724)
+...+.. ..-+-.+ ..-.+-..+-.+.-+||||+=-+.-+ .+.+...+... . ..||+.|.++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~--Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-E--GTVLLVSHDRYFLDRVA 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-C--CeEEEEeCCHHHHHhhc
Confidence 4443221 0111122 22333445566888999997544322 22222333332 2 36899999998877654
Q ss_pred Cccceeec
Q 048789 304 AHRSFKVE 311 (724)
Q Consensus 304 ~~~~~~l~ 311 (724)
...+.+.
T Consensus 504 -~~i~~~~ 510 (530)
T COG0488 504 -TRIWLVE 510 (530)
T ss_pred -ceEEEEc
Confidence 3344444
No 313
>PTZ00301 uridine kinase; Provisional
Probab=95.29 E-value=0.017 Score=55.31 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 314
>PRK14974 cell division protein FtsY; Provisional
Probab=95.28 E-value=0.14 Score=52.71 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC-cCCHHHHHHHHHHHcCCCccc-cCCcCHHHH-HHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK-DLQLAKIQEGIAKKMGLFNES-WQSKGLEEK-ANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~l 250 (724)
+..+|.++|+.|+||||++..++..+. ...+ .++.+.... .......++.....++.+... ....+.... .+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999999888887762 2233 233343221 122334455666666654211 112222222 2333
Q ss_pred HHHHccCceEEEeccccC
Q 048789 251 FKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 251 ~~~l~~k~~LlVlDdv~~ 268 (724)
........-++++|....
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 322222233888898743
No 315
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.25 E-value=0.017 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999876
No 316
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.024 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|.|.+|+||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 317
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.073 Score=55.83 Aligned_cols=25 Identities=32% Similarity=0.483 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++.++|++|+||||++..++..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 318
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.22 E-value=0.019 Score=52.80 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=75.9
Q ss_pred CceEEEccCCC-CCchhhhccccCCeeecCCCCccccchHHh-ccccCcEeecCCcccccccCh-hhhcCCCcCcEEecc
Q 048789 417 SLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEFK-YLVNLKCLNLEYTYGVLKIPP-KVISNLKILQTLRMY 493 (724)
Q Consensus 417 ~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~-~L~~L~~L~l~~~~~~~~lp~-~~i~~l~~L~~L~l~ 493 (724)
..-.+||+++. .-.+.+..++.|.+|.|.+|+|..+-..+. .+.+|..|.+.+|+ +.++-+ +-+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeec
Confidence 45678898888 333457789999999999999998877665 45679999999884 554432 116788999999988
Q ss_pred ccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcc
Q 048789 494 ECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNN 532 (724)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~ 532 (724)
+|+.... ..+..--+..+++|+.|++..-.
T Consensus 122 ~Npv~~k---------~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVEHK---------KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchhcc---------cCceeEEEEecCcceEeehhhhh
Confidence 8764321 23333446778899999887433
No 319
>PRK06762 hypothetical protein; Provisional
Probab=95.20 E-value=0.019 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 320
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.18 E-value=0.093 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 321
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.18 E-value=0.097 Score=48.62 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCC--C---CCCc--EEEEEEeCCcCCHHHHHHHHHHHcCCCcc--c--cCCcC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDT--P---NSFD--FVIWIVVSKDLQLAKIQEGIAKKMGLFNE--S--WQSKG 242 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~---~~f~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--~--~~~~~ 242 (724)
.-.+++|+|+.|+|||||.+.+..+.-++ . ..|. .+.|+. + .+.+..++.... . ...-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 44689999999999999999986432111 0 0111 123321 1 345566654321 0 11111
Q ss_pred --HHHHHHHHHHHHccC--ceEEEeccccCh---hchhhccCCCCCC-CCCCcEEEEecCChHHHhhccCccceee
Q 048789 243 --LEEKANKIFKILSKK--KFVLLLDDIWEL---VDLAQVGLPVSSC-ASSSNKIVFTTREIEVCGQMEAHRSFKV 310 (724)
Q Consensus 243 --~~~~~~~l~~~l~~k--~~LlVlDdv~~~---~~~~~l~~~~~~~-~~g~s~iliTtr~~~v~~~~~~~~~~~l 310 (724)
..+... +-..+..+ .=++++|+--.. ...+.+...+... ..| ..||++|.+.+.... .+..+.+
T Consensus 90 gGq~qrl~-laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVK-LASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG-NTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHH-HHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh--CCEEEEE
Confidence 222233 33444455 678888986442 1122222222111 134 678888888776542 3444444
No 322
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.091 Score=51.13 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=69.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCC----------CC---cEEEEEEeCCcCC------H---------------
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPN----------SF---DFVIWIVVSKDLQ------L--------------- 220 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~v~~~~~------~--------------- 220 (724)
-.+++|+|+.|.|||||.+.+..-....++ .+ ..+.||+-...++ .
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 369999999999999999999984421111 01 2456664211111 1
Q ss_pred -------HHHHHHHHHHcCCCcc---ccCCcCHHHHH-HHHHHHHccCceEEEeccccC------hhchhhccCCCCCCC
Q 048789 221 -------AKIQEGIAKKMGLFNE---SWQSKGLEEKA-NKIFKILSKKKFVLLLDDIWE------LVDLAQVGLPVSSCA 283 (724)
Q Consensus 221 -------~~~~~~i~~~l~~~~~---~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~ 283 (724)
.+...+.++.++...- ....-+-.+.+ -.|-+.|..+.=|++||+=.. ....-++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 2444555555544321 11222223333 345567788889999997432 22233333333332
Q ss_pred CCCcEEEEecCChHHHh
Q 048789 284 SSSNKIVFTTREIEVCG 300 (724)
Q Consensus 284 ~g~s~iliTtr~~~v~~ 300 (724)
| ..|++.|.+-....
T Consensus 189 -g-~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -G-KTVLMVTHDLGLVM 203 (254)
T ss_pred -C-CEEEEEeCCcHHhH
Confidence 5 88999999866543
No 323
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.13 E-value=0.13 Score=52.98 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCC---CCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDT---PNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.-.++-|+|.+|+|||+++.+++-..... ...-..++||+....++.+++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 45789999999999999999987765110 0011379999998888887765 44555543
No 324
>PRK04132 replication factor C small subunit; Provisional
Probab=95.12 E-value=0.46 Score=54.88 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=85.9
Q ss_pred CCCCcHHHHHHHHHHhccCCCCCC-cEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEE
Q 048789 183 MGGVGKTTLLTQINNKFLDTPNSF-DFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVL 261 (724)
Q Consensus 183 ~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 261 (724)
+.++||||+|+.++++.- . ..+ ...+-++.++......+ ++++........ . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~-g-~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~------~----------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF-G-ENWRHNFLELNASDERGINVI-REKVKEFARTKP------I----------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh-c-ccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC------c----------CCCCCEEE
Confidence 778999999999999861 1 222 23555666654444433 333332211000 0 01245699
Q ss_pred EeccccCh--hchhhccCCCCCCCCCCcEEEEecCC-hHHHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCCh
Q 048789 262 LLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTRE-IEVCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDI 337 (724)
Q Consensus 262 VlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~ 337 (724)
|+|+++.- .....+...+..-... +++|++|.+ ..+...+ .....+.+.+++.++-...+.+.+.......+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~-~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSN-VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCC-eEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 99999764 2333333332221223 566655554 3333222 22457899999998888777765543221111
Q ss_pred HHHHHHHHHHhCCCCchHHHH
Q 048789 338 PELAEAVARECGGLPLALITV 358 (724)
Q Consensus 338 ~~~~~~i~~~c~g~Plai~~~ 358 (724)
.+....|++.|+|.+..+..+
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 456788999999988654433
No 325
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.12 E-value=0.64 Score=47.92 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-...+.++|+.|+||||+|+.+....
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998876
No 326
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.12 E-value=0.06 Score=52.79 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=59.2
Q ss_pred ccccchhhHHHHHHHhhc-------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLME-------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
.++|..-..+.|++.+.+ .++-|++.+|..|+||..+++.+++..-+...+-+ .....
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHHh
Confidence 467776667777777654 35669999999999999999999998722111111 11122
Q ss_pred HHHcCCCccccCCcCHHHHHHHHHHHHc-cCceEEEeccccC
Q 048789 228 AKKMGLFNESWQSKGLEEKANKIFKILS-KKKFVLLLDDIWE 268 (724)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 268 (724)
.....-+.......-.+++.+.++..++ .++-|+|+|+++.
T Consensus 148 vat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DK 189 (344)
T KOG2170|consen 148 VATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDK 189 (344)
T ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhh
Confidence 2222222111011122344555555553 4899999999975
No 327
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.11 E-value=0.052 Score=56.73 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME--------------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.++.+..+..++.. -..+.|.++|++|+|||++|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999988888777643 014689999999999999999999887
No 328
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.09 E-value=0.021 Score=55.00 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 329
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.11 Score=51.77 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH-cCCCccccCCcCHHHH---HHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK-MGLFNESWQSKGLEEK---ANK 249 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~---~~~ 249 (724)
.-+++=|+|+.|+||||+|.+++-.. +..-..++|++.-..++++.+.. +... +..-. .....+.++. ++.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~-v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLL-VSQPDTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhccee-EecCCCHHHHHHHHHH
Confidence 45689999999999999999987766 34444899999999999887654 3333 21110 0122233333 333
Q ss_pred HHHHHccCceEEEeccc
Q 048789 250 IFKILSKKKFVLLLDDI 266 (724)
Q Consensus 250 l~~~l~~k~~LlVlDdv 266 (724)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 33333334568888887
No 330
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.07 E-value=0.042 Score=47.96 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 161 STFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 161 ~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++..++.+.|.. ..-.+|.+.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344455555543 344699999999999999999999987
No 331
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.07 E-value=0.036 Score=49.31 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK 216 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 216 (724)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999983 35566665666555
No 332
>PRK03839 putative kinase; Provisional
Probab=95.03 E-value=0.02 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 333
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.19 Score=55.16 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=92.0
Q ss_pred CccccchhhHHHHHH---HhhcC---------CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWK---CLMEE---------QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~---~L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.++.|.++.++++.+ .|.+. -++-|..+|++|.|||.||++++... .+ ..|. .|..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf~------iSGS---- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFFS------ISGS---- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Ccee------ccch----
Confidence 457898877666554 55442 25578999999999999999999987 32 2222 1111
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh----------------hchhhccCCCCCCC--
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL----------------VDLAQVGLPVSSCA-- 283 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~-- 283 (724)
+... +. ..-......+...+..+.-+|++++|.++.. +.+.++........
T Consensus 218 ~FVe-mf----------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 DFVE-MF----------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhhh-hh----------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 0000 00 1122233334444455566899999988642 12233332222222
Q ss_pred CCCcEEEEecCChHHHh-----hccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch
Q 048789 284 SSSNKIVFTTREIEVCG-----QMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 284 ~g~s~iliTtr~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
.| -.|+-.|...+|.+ ...-+..+.++.-+-..-.+++.-++........-++.. |++.+-|.--|
T Consensus 287 ~g-viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 287 EG-VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred Cc-eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcccc
Confidence 22 23333444444432 222344566666666667777776665444232233322 66767665543
No 334
>PRK05439 pantothenate kinase; Provisional
Probab=95.01 E-value=0.17 Score=51.29 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=45.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
...-+|+|.|.+|+||||+|+.+.... .....-..+.-++...-....+.+.. ..+....+....-+.+.+.+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHH
Confidence 456799999999999999999998866 21111123444554444333332221 011100111134466666766666
Q ss_pred HHccCc
Q 048789 253 ILSKKK 258 (724)
Q Consensus 253 ~l~~k~ 258 (724)
...|+.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666665
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.14 Score=53.73 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCC-CCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTP-NSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIF 251 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (724)
..++|.++|..|+||||.+..++..+.... ..-..+..++.... ......++...+.++.+.. ......++...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999888762111 12234555554432 2233335666666665432 2334444444444
Q ss_pred HHHccCceEEEecccc
Q 048789 252 KILSKKKFVLLLDDIW 267 (724)
Q Consensus 252 ~~l~~k~~LlVlDdv~ 267 (724)
+. .+.-++++|...
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 32 345688888874
No 336
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.00 E-value=0.022 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.++|.|+|++|+||||+|+.+...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998775
No 337
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.98 E-value=0.15 Score=52.78 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=43.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccC--CC-CCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLD--TP-NSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF 234 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 234 (724)
.-.++-|+|.+|+|||+++..++-.... .. ..-..++|++....|+++++. +|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 4568899999999999999887754310 01 122379999999999888764 566666543
No 338
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.97 E-value=0.12 Score=50.98 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcc-CCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCccc----cCCcCH----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFL-DTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNES----WQSKGL---- 243 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~---- 243 (724)
.-..++|.|-.|+|||+|+.++.++.. ..+..-+.++++-+++.. +..++...+.+.=.....- ....+.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 345789999999999999999888751 012335788888888664 4566666665532111100 011111
Q ss_pred --HHHHHHHHHHH---ccCceEEEeccccC
Q 048789 244 --EEKANKIFKIL---SKKKFVLLLDDIWE 268 (724)
Q Consensus 244 --~~~~~~l~~~l---~~k~~LlVlDdv~~ 268 (724)
....-.+-+++ .++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11122333444 37899999999854
No 339
>PRK04328 hypothetical protein; Provisional
Probab=94.97 E-value=0.1 Score=51.75 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD 217 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 217 (724)
.-.++.|.|.+|+|||++|.++.... -..-+.++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45799999999999999999876653 123466788887664
No 340
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.97 E-value=0.062 Score=47.91 Aligned_cols=43 Identities=33% Similarity=0.297 Sum_probs=32.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHH
Q 048789 178 VGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEG 226 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 226 (724)
|.++|.+|+|||++|+.++... . ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccceee
Confidence 6799999999999999999987 1 23444677777777776543
No 341
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.11 Score=53.32 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=58.4
Q ss_pred HHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc--
Q 048789 163 FDGVWKCLMEE--QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW-- 238 (724)
Q Consensus 163 ~~~l~~~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-- 238 (724)
+.++-+.|-.+ .-.+|.|=|-+|+|||||..++..+.. .+. .+.+|+-.+. ..++ +--++.++....+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA-~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA-KRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH-hcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEE
Confidence 44454555443 346999999999999999999999983 122 6777765443 3322 23345565443321
Q ss_pred -CCcCHHHHHHHHHHHHccCceEEEeccccC
Q 048789 239 -QSKGLEEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 239 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
...+.++....+. +.+.-++|+|-+.+
T Consensus 152 ~aEt~~e~I~~~l~---~~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELE---QEKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHH---hcCCCEEEEeccce
Confidence 2233333333333 36788999999854
No 342
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.96 E-value=0.048 Score=58.81 Aligned_cols=98 Identities=22% Similarity=0.186 Sum_probs=52.9
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEE-EEEeCCcC-CHHHHHHHHHHHcCCCccccCCcC
Q 048789 166 VWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVI-WIVVSKDL-QLAKIQEGIAKKMGLFNESWQSKG 242 (724)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~-wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 242 (724)
+++++.. ..-...+|+|.+|+|||||++.+.+... ..+-++.+ .+-|.+.. ...++.+.+-.++-... ...+
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT---~D~p 480 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST---FDRP 480 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC---CCCC
Confidence 4444444 3445789999999999999999999763 22333333 34455443 23333333211110000 1111
Q ss_pred H------HHHHHHHHHHH--ccCceEEEeccccC
Q 048789 243 L------EEKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 243 ~------~~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
. ..+.-.+-+++ .++.+||++|++-.
T Consensus 481 ~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 481 PSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1 12222233333 67999999999854
No 343
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.023 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999998
No 344
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.93 E-value=0.05 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 345
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.9 Score=43.58 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=40.7
Q ss_pred CCCCCCC--CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 147 VDERPLP--ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 147 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+++.|++ .++-|-++.++++++.+.- ..++-|..+|++|.|||-+|++.+.+-
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3444443 3567889999999987642 246689999999999999999988765
No 346
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.91 E-value=0.0084 Score=66.31 Aligned_cols=86 Identities=28% Similarity=0.238 Sum_probs=49.5
Q ss_pred hhcCCCceEEEccCCCC-----CchhhhccccCCeeecCCC--Cccc----cchHHhccccCcEeecCCcccccccChhh
Q 048789 412 FQSMASLRVLKLSYSNP-----LLFEISKVVSLQHLDLSHS--RIER----LPIEFKYLVNLKCLNLEYTYGVLKIPPKV 480 (724)
Q Consensus 412 ~~~l~~Lr~L~l~~~~~-----lp~~i~~L~~L~~L~L~~~--~i~~----Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 480 (724)
...++.|+.|.+.++.. +-.....+++|+.|+++++ .+.. .+.....+.+|+.|++++|..+...--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34467778787777762 2234566788888888763 1111 12233445778888888775333222111
Q ss_pred hc-CCCcCcEEeccccCC
Q 048789 481 IS-NLKILQTLRMYECAT 497 (724)
Q Consensus 481 i~-~l~~L~~L~l~~~~~ 497 (724)
+. .+++|++|.+..|..
T Consensus 264 l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSN 281 (482)
T ss_pred HHhhCCCcceEccCCCCc
Confidence 22 367788887665653
No 347
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.89 E-value=0.035 Score=55.59 Aligned_cols=90 Identities=27% Similarity=0.345 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcC
Q 048789 163 FDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKG 242 (724)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 242 (724)
...+++.+...+ +-+.++|+.|+|||++++...... .. ..| ...-++.+.......+++.+-..+...... .-.
T Consensus 22 ~~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~--~~g 95 (272)
T PF12775_consen 22 YSYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-DS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR--VYG 95 (272)
T ss_dssp HHHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-TT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE--EEE
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-Cc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC--CCC
Confidence 345566666554 456899999999999999988765 21 222 233455555544444433222222111100 000
Q ss_pred HHHHHHHHHHHHccCceEEEeccccC
Q 048789 243 LEEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 243 ~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
--.+|+.++.+||+.-
T Consensus 96 ----------P~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 96 ----------PPGGKKLVLFIDDLNM 111 (272)
T ss_dssp ----------EESSSEEEEEEETTT-
T ss_pred ----------CCCCcEEEEEecccCC
Confidence 0135788889999864
No 348
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.89 E-value=0.031 Score=47.94 Aligned_cols=41 Identities=39% Similarity=0.436 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHH
Q 048789 178 VGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQ 224 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 224 (724)
|.|+|.+|+||||+|+.++... ...|.. |....+..+.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R---Iq~tpdllPsDi~ 42 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR---IQFTPDLLPSDIL 42 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE---EE--TT--HHHHH
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE---EEecCCCCcccce
Confidence 6799999999999999999987 556643 2333334444443
No 349
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.88 E-value=0.11 Score=47.84 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998876
No 350
>PRK04040 adenylate kinase; Provisional
Probab=94.88 E-value=0.025 Score=53.23 Aligned_cols=25 Identities=44% Similarity=0.638 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 351
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.87 E-value=0.092 Score=59.66 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-+++-|+|.+|+||||||.+++.... ..-..++|++....++.. .+++++.+.+. ......++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 457899999999999999988666541 233567999887777643 66677664322 1234455566666
Q ss_pred HHHHcc-CceEEEecccc
Q 048789 251 FKILSK-KKFVLLLDDIW 267 (724)
Q Consensus 251 ~~~l~~-k~~LlVlDdv~ 267 (724)
.+.+.. +--++|+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 665544 56689999975
No 352
>PRK06217 hypothetical protein; Validated
Probab=94.87 E-value=0.047 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|.|.+|+||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 353
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.86 E-value=0.12 Score=48.85 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHH
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEG 226 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 226 (724)
++.|.|.+|+|||++|.++..... ..-..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999877652 22245778876543 4555444
No 354
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.14 Score=50.00 Aligned_cols=91 Identities=20% Similarity=0.332 Sum_probs=59.2
Q ss_pred CccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.++.|-+..++.+.+...- ...+-|.++|++|.||+.||++|+... . .. |++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-n-ST------FFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-N-ST------FFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-C-Cc------eEEeehH----
Confidence 4578988888888876421 235789999999999999999999886 2 22 2344433
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWE 268 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 268 (724)
++ ...--+ .-+.++..|.+.. ..|+-+|.+|+|+.
T Consensus 201 DL----vSKWmG--------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 DL----VSKWMG--------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HH----HHHHhc--------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11 111111 1234455555544 35888999999864
No 355
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.85 E-value=0.11 Score=49.46 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCC-------cEEEEEEeCCc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSF-------DFVIWIVVSKD 217 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-------~~~~wv~v~~~ 217 (724)
.++.|.|.+|+||||++..+..........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5899999999999999999988874322222 26778876655
No 356
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.15 Score=47.35 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|.|||||.+.++...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999998876
No 357
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.82 E-value=0.15 Score=45.80 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44689999999999999999998875
No 358
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.047 Score=47.53 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL 254 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (724)
.+-|.|.|.+|+||||+|.+++... . .-|+++|+-..-..+....=++. ....-+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y-----~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEY-----KCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccc-----cCccccHHHHHHHHHHHH
Confidence 4568999999999999999999664 1 23455554322222222111111 113345566666666666
Q ss_pred ccCc
Q 048789 255 SKKK 258 (724)
Q Consensus 255 ~~k~ 258 (724)
.+.-
T Consensus 74 ~~Gg 77 (176)
T KOG3347|consen 74 IEGG 77 (176)
T ss_pred hcCC
Confidence 5433
No 359
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.80 E-value=0.19 Score=49.24 Aligned_cols=47 Identities=26% Similarity=0.243 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQE 225 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 225 (724)
.-.++.|.|.+|+||||+|.++..... ..-..++|++.... .+++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~ 65 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIR 65 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHH
Confidence 457999999999999999998765541 12356788876443 344443
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.2 Score=51.89 Aligned_cols=89 Identities=21% Similarity=0.184 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
+.+++.++|+.|+||||++..++.... .+ -..+.+++.... ....+-++...+.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 467999999999999999999887762 12 234556665433 2334455556665654432 23455555554443
Q ss_pred HHc-cCceEEEecccc
Q 048789 253 ILS-KKKFVLLLDDIW 267 (724)
Q Consensus 253 ~l~-~k~~LlVlDdv~ 267 (724)
.-. +..=++++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 321 344577788764
No 361
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.78 E-value=0.046 Score=50.37 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=32.9
Q ss_pred cccchhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 156 VVGLQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++|....+.++.+.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46778888888877654 333567799999999999999999965
No 362
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.22 Score=47.76 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=55.0
Q ss_pred ccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 155 TVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++-|-.+.++++.+...- +..+-|..+|++|.|||-+|++|+|+- ...|-.++ .
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacfirvi-----g----- 244 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACFIRVI-----G----- 244 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceEEeeh-----h-----
Confidence 345667777776654421 456789999999999999999999975 33332221 1
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHcc-CceEEEeccccC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSK-KKFVLLLDDIWE 268 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 268 (724)
..+.++.-+ .-..+...+.+..+. |-|++.+|++..
T Consensus 245 ---selvqkyvg--------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 ---SELVQKYVG--------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred ---HHHHHHHhh--------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 112221111 112345566665555 558888888764
No 363
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.77 E-value=0.96 Score=46.36 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=35.1
Q ss_pred ceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchH
Q 048789 307 SFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLAL 355 (724)
Q Consensus 307 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 355 (724)
.+++.+++.+|+..++.-+....-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6789999999999999888755443322344556677777779988543
No 364
>PTZ00035 Rad51 protein; Provisional
Probab=94.75 E-value=0.39 Score=49.75 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccC---CCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLD---TPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.-.++.|+|.+|+|||+++..++-.... ....-..++|++....++++++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 4579999999999999999988754410 0112246779998887887774 445665544
No 365
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.75 E-value=0.03 Score=54.37 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|+|++|+||||+|+.+...+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999886
No 366
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.74 E-value=0.086 Score=56.06 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHhhc-------C---------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME-------E---------QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+...+.. . ..+.|.++|++|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999888877554421 0 23579999999999999999998776
No 367
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.74 E-value=0.062 Score=60.21 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=57.3
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
+.++|.+..++.+...+... +.+.++|.+|+||||+|+.+..... ...++..+|..- ...+...+++.+..+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 35789888888887766654 4799999999999999999998872 345677788665 334677888888876654
No 368
>PRK00625 shikimate kinase; Provisional
Probab=94.73 E-value=0.026 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.++|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998886
No 369
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.0047 Score=59.36 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=77.0
Q ss_pred CCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccCh-hhhcCCCcCcEEec
Q 048789 415 MASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPP-KVISNLKILQTLRM 492 (724)
Q Consensus 415 l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~i~~l~~L~~L~l 492 (724)
+.+.+.|++-+|. .-..-+.+++.|..|.|+-|+|++|. .+..+++|+.|+|+.|. +..+.. .-+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 4556777887777 44445667999999999999999984 67889999999999884 555443 23678999999999
Q ss_pred cccCCCcccccccccCCcccchHHhhcCCCCCeEEE
Q 048789 493 YECATVPQARDSILFGDCRVLVEELLCLEHLSVFTI 528 (724)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i 528 (724)
..|+-... ++..+...-|.-|++|++|+-
T Consensus 96 ~ENPCc~~-------ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGE-------AGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccc-------cchhHHHHHHHHcccchhccC
Confidence 88764432 223445556777888887763
No 370
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.66 E-value=0.08 Score=55.94 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCccc----cCCcCHH----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNES----WQSKGLE---- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 244 (724)
.-..++|+|..|+|||||++.+.+.. ..+.++.+-+++.. ...++.+.++..-+....- ..+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 44689999999999999999998654 22456666666553 3455666654432211100 0111111
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccC
Q 048789 245 --EKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
..+-.+-+++ +++.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1112233333 58999999999854
No 371
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.65 E-value=0.12 Score=55.40 Aligned_cols=87 Identities=28% Similarity=0.273 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
.+++.++|++|+||||++..++..+ .....-..+..|+..... ....-+....+.++.+.. ...+..++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3599999999999999998887766 101222345556543321 112223333444444322 22334445544443
Q ss_pred HccCceEEEeccc
Q 048789 254 LSKKKFVLLLDDI 266 (724)
Q Consensus 254 l~~k~~LlVlDdv 266 (724)
+. ..=++++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 22 3457888865
No 372
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.62 E-value=0.025 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
||.|+|++|+||||+|+.+...+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 373
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.03 Score=49.58 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=34.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCC
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLF 234 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 234 (724)
+|.|-|.+|+||||+|+.+.++. .-.| .+.-.+.++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999987 1111 13346788888887765
No 374
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.54 E-value=0.15 Score=48.83 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=56.7
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCcc----ccCC
Q 048789 167 WKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNE----SWQS 240 (724)
Q Consensus 167 ~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~----~~~~ 240 (724)
++.+.. ..-..++|.|.+|+|||+|+..+.+.. .-+..+++-+++. .+..++.+++...-..... ....
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 444443 233579999999999999999999986 1244477777755 4566666666433111000 0011
Q ss_pred cCHH----------HHHHHHHHHHccCceEEEeccccC
Q 048789 241 KGLE----------EKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 241 ~~~~----------~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
.+.. ..++.+++ +++.+|+++||+-.
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred hhHHHHhhhhccchhhhHHHhh--cCCceeehhhhhHH
Confidence 1111 12233333 68999999999843
No 375
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.54 E-value=0.026 Score=53.92 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 376
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.53 E-value=0.028 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 377
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.52 E-value=0.13 Score=54.62 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCc-c--ccCCcCH------H
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFN-E--SWQSKGL------E 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-~--~~~~~~~------~ 244 (724)
.-..++|+|..|+|||||++.+.... .....+++..--...++.++....+....... . .....+. .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 34589999999999999999887654 12223444432233445554444443321100 0 0011111 1
Q ss_pred HHHHHHHHHH--ccCceEEEeccccC
Q 048789 245 EKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 245 ~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
...-.+-+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1122223333 57999999999854
No 378
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.52 E-value=0.069 Score=51.74 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=36.7
Q ss_pred hHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHH
Q 048789 162 TFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAK 222 (724)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 222 (724)
...++++.+.. ++..+|+|.|++|+||+||...+...+. .+++=-.++-|+-|.+++--.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCc
Confidence 34455555544 4678999999999999999999998883 233333455555555554333
No 379
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.52 E-value=0.065 Score=52.66 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=42.9
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHH
Q 048789 163 FDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQ 224 (724)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 224 (724)
-.+++..+.. ++..+|+|.|.||+||+||...+...+ ..+++=-.++-|+-|.+++--.++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 3455555543 567899999999999999999999888 444444456666666666544433
No 380
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.51 E-value=0.18 Score=47.31 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE---eCCcCCHHHHHH------HHHHHcCCCccc---cCCc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV---VSKDLQLAKIQE------GIAKKMGLFNES---WQSK 241 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~------~i~~~l~~~~~~---~~~~ 241 (724)
.-.+++|+|..|.|||||++.++.... .....+++. +.. .+...+.. ++++.++..... ...-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 446999999999999999999988652 223333332 221 12222211 244555433210 0111
Q ss_pred CH-HHHHHHHHHHHccCceEEEeccccChh---chhhccCCCCCC-CC-CCcEEEEecCChHHH
Q 048789 242 GL-EEKANKIFKILSKKKFVLLLDDIWELV---DLAQVGLPVSSC-AS-SSNKIVFTTREIEVC 299 (724)
Q Consensus 242 ~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~~~~~-~~-g~s~iliTtr~~~v~ 299 (724)
+. +...-.+-..+...+-++++|+--..- ..+.+...+... .. + ..||++|.+....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG-KTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHH
Confidence 11 222223444556677889999865422 122222222111 12 4 6788888886654
No 381
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.51 E-value=0.073 Score=52.07 Aligned_cols=89 Identities=25% Similarity=0.245 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc-------------cC-
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES-------------WQ- 239 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------------~~- 239 (724)
.-.++.|.|.+|+|||+++.++..... +..=+.++||+.... .+++.+.+- +++.+... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 457999999999999999998665431 111356788887554 355554433 33321100 00
Q ss_pred ----CcCHHHHHHHHHHHHcc-CceEEEecccc
Q 048789 240 ----SKGLEEKANKIFKILSK-KKFVLLLDDIW 267 (724)
Q Consensus 240 ----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 267 (724)
..+.+.....+.+.++. +...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34677777888777755 55788999874
No 382
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.50 E-value=0.24 Score=48.40 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
.-.++.|.|..|+||||+|.++..... +.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345999999999999999866655441 122 4456666333 456666665
No 383
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.47 E-value=0.17 Score=50.51 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=59.4
Q ss_pred ccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcc
Q 048789 157 VGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNE 236 (724)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 236 (724)
.|...+..+.++.+.....++|.|.|..|+||||++..+.+... ..-..++.+.-........ ..++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEeC--
Confidence 45544444444444455567999999999999999998877662 1111233332111111111 0111111
Q ss_pred ccCCcCHHHHHHHHHHHHccCceEEEeccccChhchhh
Q 048789 237 SWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQ 274 (724)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 274 (724)
........+.++..++...=.++++++.+.+....
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 11112345667777888888999999988765443
No 384
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.46 E-value=0.029 Score=47.42 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 048789 178 VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988776
No 385
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.44 E-value=0.093 Score=52.36 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK 216 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 216 (724)
.-.++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 456999999999999999999766541 2235677888754
No 386
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.41 E-value=0.76 Score=45.20 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC--CHHHHHHHHHHHc--CCCccc--cCCcCHHHHHHHH
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL--QLAKIQEGIAKKM--GLFNES--WQSKGLEEKANKI 250 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 250 (724)
+|+|.|.+|+||||+|+.+...+ ...+ ..+..++...-. +-...-..+.... +..-+. ..+.+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998877 2111 123334432221 2122222222221 112111 2556777777777
Q ss_pred HHHHccCce
Q 048789 251 FKILSKKKF 259 (724)
Q Consensus 251 ~~~l~~k~~ 259 (724)
+.+.+++..
T Consensus 78 ~~L~~g~~i 86 (277)
T cd02029 78 RTYGETGRG 86 (277)
T ss_pred HHHHcCCCc
Confidence 777766543
No 387
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.38 E-value=0.067 Score=52.36 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=63.0
Q ss_pred hhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 048789 12 DDSVSHCLDCSVRKAGYICHLQDNLDALQRELQMLIEERNDVRVRVIVAEQQQMKRLERVQGWLSRVEKVESRVGKLIRK 91 (724)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~~~~~~~~~~Wl~~lr~~~yd~ed~ld~ 91 (724)
.-++..|-.+.......+.-++.+++-++++++++|.||+.+ ++....+++. .+.+..++-..||++|.++|-
T Consensus 299 dFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 299 DFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred HHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeeeeh
Confidence 556777777777777777789999999999999999999997 6665555645 999999999999999999988
Q ss_pred Ch
Q 048789 92 SP 93 (724)
Q Consensus 92 ~~ 93 (724)
+.
T Consensus 372 Ci 373 (402)
T PF12061_consen 372 CI 373 (402)
T ss_pred hh
Confidence 63
No 388
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.37 E-value=0.032 Score=50.12 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 048789 177 IVGLYGMGGVGKTTLLTQIN 196 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~ 196 (724)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 389
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.15 Score=47.42 Aligned_cols=26 Identities=42% Similarity=0.553 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998865
No 390
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.35 E-value=0.12 Score=58.07 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=51.0
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
+.++|.++.++.+...+.... .+.++|++|+||||+|+.+.+... ...|...+++.-+ ..+...+++.+..+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 457898888877777666543 566999999999999999999873 2344444433322 22455667777776653
No 391
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.33 E-value=0.3 Score=51.82 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+++|..|+||||++..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999887754
No 392
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.33 E-value=0.18 Score=46.47 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=44.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc-CCcCHHHHHHHHHHHHc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW-QSKGLEEKANKIFKILS 255 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l~ 255 (724)
++.|.|.+|+||||+|..+.... .. ..+++......+. +..+.|..........+ .-....++...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~~-----~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-GL-----QVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-CC-----CcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68999999999999999998775 11 2344444444333 34444433222112111 11122234444444333
Q ss_pred cCceEEEeccc
Q 048789 256 KKKFVLLLDDI 266 (724)
Q Consensus 256 ~k~~LlVlDdv 266 (724)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 336888886
No 393
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.31 E-value=0.039 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++.|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 394
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.29 E-value=0.11 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFL 200 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~ 200 (724)
+.|.|.|.+|+||||+|+.+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999873
No 395
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.27 E-value=0.05 Score=48.95 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..||-|.|.+|+||||||+.+...+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999999998
No 396
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.26 E-value=0.046 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 397
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.24 E-value=0.099 Score=52.36 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 229 (724)
..-+++.|+|.+|+|||+++.++.... ......++||+.... ...+.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 356799999999999999999988877 344888999998765 4555554443
No 398
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.048 Score=61.41 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=85.5
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc------EEEEEEeCCcCCHHHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD------FVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~------~~~wv~v~~~~~~~~~~~~i~ 228 (724)
.++||++++.++++.|....-.--.++|.+|||||+++.-++.+.. .+... .++-. |+..+.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~sL------D~g~Lv---- 238 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYSL------DLGSLV---- 238 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEEe------cHHHHh----
Confidence 4799999999999999875433445789999999999988888762 22111 11111 111111
Q ss_pred HHcCCCccccCCcCHHHHHHHHHHHHc-cCceEEEeccccChh----------chhhccCCCCCCCCCCcEEEEecCChH
Q 048789 229 KKMGLFNESWQSKGLEEKANKIFKILS-KKKFVLLLDDIWELV----------DLAQVGLPVSSCASSSNKIVFTTREIE 297 (724)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~g~s~iliTtr~~~ 297 (724)
.+.. -..+.+++.+.+.+.++ .++.+|++|.+.+.. +...+..| .-..|.-+.|-.|.-.+
T Consensus 239 ---AGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP--aLARGeL~~IGATT~~E 310 (786)
T COG0542 239 ---AGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP--ALARGELRCIGATTLDE 310 (786)
T ss_pred ---cccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH--HHhcCCeEEEEeccHHH
Confidence 1110 23345555555555553 458999999997631 11222222 22233234444443333
Q ss_pred HHhhc-------cCccceeeccCChHHHHHHHHHH
Q 048789 298 VCGQM-------EAHRSFKVECLGFDDAWKLFEEK 325 (724)
Q Consensus 298 v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 325 (724)
.-..+ .....+.++.-+.+++..++.-.
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 22111 12346778888888888777643
No 399
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=1.3 Score=49.03 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=55.2
Q ss_pred ccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 155 TVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++-|..+.++.+.+.+.- ....-|.++|++|.|||.||.+++.... .-+++|-.+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--------~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--------LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCH----
Confidence 445555555555555432 1234689999999999999999988761 224555444
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
+++.+. ...+.+...+...+.-.-++|++.+|+.++
T Consensus 736 ----ElL~Ky-------IGaSEq~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 736 ----ELLSKY-------IGASEQNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred ----HHHHHH-------hcccHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222221 112233333333444456999999999875
No 400
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.22 E-value=0.18 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 048789 178 VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 401
>PRK08149 ATP synthase SpaL; Validated
Probab=94.18 E-value=0.21 Score=52.92 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCccc----cCCcCH-----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNES----WQSKGL----- 243 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~----- 243 (724)
+-..++|+|..|+|||||+..+++.. .-+.++...+... .+..++............-. ....+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999998764 1233333444332 35556666665543211100 011111
Q ss_pred -HHHHHHHHHHH--ccCceEEEeccccC
Q 048789 244 -EEKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 244 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
...+..+-+++ +++++|+++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11222233333 58999999999854
No 402
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.16 E-value=4.4 Score=43.98 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
.-.++.|-|.+|+|||++|..+..+... ... ..++|++... +..++...++...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~-~~g-~~vl~~SlEm--~~~~i~~R~~~~~ 247 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAI-KEG-KPVAFFSLEM--SAEQLAMRMLSSE 247 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHH-hCC-CeEEEEeCcC--CHHHHHHHHHHHh
Confidence 3458999999999999999998877521 112 3566665543 5667777666544
No 403
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.16 E-value=0.045 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...|.++|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999986
No 404
>PRK05973 replicative DNA helicase; Provisional
Probab=94.15 E-value=0.34 Score=47.12 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
.-.++.|.|.+|+|||++|.++..... +. -..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 446899999999999999999877652 22 345677765544 45555544
No 405
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.13 E-value=0.28 Score=52.58 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhccCC-----CCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc-----CCcC
Q 048789 174 QMGIVGLYGMGGVGKTTLL-TQINNKFLDT-----PNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW-----QSKG 242 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~ 242 (724)
.-..++|.|..|+|||+|| ..+.++. .+ ...-+.++++.+++..+.-.-+...+++-+...... ...+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 3457899999999999997 6667664 11 134467888888877543332334444433211110 1111
Q ss_pred HH-H-----HHHHHHHHH--ccCceEEEeccccC
Q 048789 243 LE-E-----KANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 243 ~~-~-----~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
.. + ..-.+-+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 1 112222333 57999999999964
No 406
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.12 E-value=0.039 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 407
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.12 E-value=0.18 Score=54.48 Aligned_cols=85 Identities=24% Similarity=0.329 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc---CCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW---QSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (724)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... ++.++...+.. ...+.+++.+.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 356999999999999999999988772 22346778775443 3333322 44554422111 122333333333
Q ss_pred HHHHccCceEEEecccc
Q 048789 251 FKILSKKKFVLLLDDIW 267 (724)
Q Consensus 251 ~~~l~~k~~LlVlDdv~ 267 (724)
. ..+.-++|+|.+.
T Consensus 153 ~---~~~~~lVVIDSIq 166 (446)
T PRK11823 153 E---EEKPDLVVIDSIQ 166 (446)
T ss_pred H---hhCCCEEEEechh
Confidence 2 2345578888874
No 408
>PRK05922 type III secretion system ATPase; Validated
Probab=94.10 E-value=0.15 Score=53.98 Aligned_cols=91 Identities=12% Similarity=0.188 Sum_probs=50.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCccc----cCCcCH----
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNES----WQSKGL---- 243 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~---- 243 (724)
..-..++|+|..|+|||||++.+.+.. . .+..+.+-++.. ....+.+.+..........- ....+.
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 344579999999999999999998764 1 233333333332 23344554444333221100 011111
Q ss_pred --HHHHHHHHHHH--ccCceEEEeccccC
Q 048789 244 --EEKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 244 --~~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
...+-.+-+++ +++.+|+++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11122233333 57999999999954
No 409
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.08 E-value=0.071 Score=55.00 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=40.4
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhcc
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFL 200 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 200 (724)
.+||-++.+..+...+.+...+-|.|.|..|+||||+|+.+++-..
T Consensus 18 ~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999888888888887888888999999999999999987763
No 410
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.07 E-value=0.083 Score=49.69 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV 213 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (724)
.++|.|+|+.|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999987 46676555554
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.06 E-value=0.35 Score=49.62 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+..+|+++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 412
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.05 E-value=0.1 Score=49.45 Aligned_cols=42 Identities=26% Similarity=0.522 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.|+|.|-||+||||+|..+..... .++.|+. .-|+....+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~~V-LvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGYNV-LVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCceE-EEEeCCCCCCh
Confidence 689999999999999999666552 2232443 33555445443
No 413
>PRK13949 shikimate kinase; Provisional
Probab=94.04 E-value=0.046 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-|.|+|+.|+||||+++.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 414
>PRK06851 hypothetical protein; Provisional
Probab=94.02 E-value=0.83 Score=47.52 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=33.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc
Q 048789 172 EEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD 217 (724)
Q Consensus 172 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 217 (724)
.+-.+++.|.|.+|+||||+++.++.... +..++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 45567899999999999999999999872 455666555554443
No 415
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.01 E-value=0.057 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999887
No 416
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.00 E-value=0.062 Score=51.68 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=27.2
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 169 CLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 169 ~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+.+.++++|+++|..|+|||||...+....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998875
No 417
>PRK15453 phosphoribulokinase; Provisional
Probab=93.99 E-value=0.3 Score=48.39 Aligned_cols=80 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc--CCHHHHHHHHH--HHcCCCccc--cCCcCHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD--LQLAKIQEGIA--KKMGLFNES--WQSKGLEEKA 247 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~--~~l~~~~~~--~~~~~~~~~~ 247 (724)
...+|+|.|.+|+||||+|+.+...+ .... .....++...- ++-...-..+. +.-+..-+. ..+.+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if-~~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF-RREN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hhcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45799999999999999999998766 2111 12333333222 13222222221 112222111 2556677777
Q ss_pred HHHHHHHcc
Q 048789 248 NKIFKILSK 256 (724)
Q Consensus 248 ~~l~~~l~~ 256 (724)
+.++....+
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776554
No 418
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.97 E-value=0.078 Score=54.69 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=38.7
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+||.+..+..++-.+.+....-+.|.|..|+||||+++.+..-+
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999888888777777667778899999999999999998776
No 419
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.97 E-value=0.096 Score=54.65 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
...+.|.|.|+.|+||||+++.+.+.. .......++.- .+.... .......-+.... .........+.++.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp~E~--~~~~~~~~i~q~e---vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITI-EDPIEY--VHRNKRSLINQRE---VGLDTLSFANALRA 190 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCChhh--hccCccceEEccc---cCCCCcCHHHHHHH
Confidence 345789999999999999999988876 22333344332 222111 1000000000000 11112334566777
Q ss_pred HHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHH
Q 048789 253 ILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVC 299 (724)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~ 299 (724)
.++...=.+++|++.+...+..... ....| ..|+.|....++.
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~---aa~tG-h~v~~T~Ha~~~~ 233 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALT---AAETG-HLVFGTLHTNSAA 233 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHH---HHHcC-CcEEEEEcCCCHH
Confidence 8888889999999987665543222 22344 5677777665543
No 420
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.96 E-value=0.15 Score=54.64 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCccc----cCCcCHH----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNES----WQSKGLE---- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 244 (724)
.-..++|+|.+|+|||||+.++.+... +.+-+.++++-+++.. ...++...+...-...... ....+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 445899999999999999999888762 2356788888777553 4566666665432111100 0111111
Q ss_pred --HHHHHHHHHH---ccCceEEEeccccC
Q 048789 245 --EKANKIFKIL---SKKKFVLLLDDIWE 268 (724)
Q Consensus 245 --~~~~~l~~~l---~~k~~LlVlDdv~~ 268 (724)
..+-.+-+++ .++.+|+++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1223334444 37999999999943
No 421
>PRK14530 adenylate kinase; Provisional
Probab=93.91 E-value=0.05 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.|.|+|++|+||||+|+.+...+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 422
>PRK13947 shikimate kinase; Provisional
Probab=93.88 E-value=0.049 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 423
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.87 E-value=0.053 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998876
No 424
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.85 E-value=0.046 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 425
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.84 E-value=0.077 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45689999999999999999988754
No 426
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.79 E-value=0.056 Score=46.59 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 048789 178 VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999876
No 427
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.77 E-value=0.05 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++|+|+|+.|+||||+|+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999865
No 428
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.76 E-value=0.078 Score=54.57 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 578999888877765554555679999999999999999998776
No 429
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.75 E-value=0.058 Score=47.90 Aligned_cols=23 Identities=43% Similarity=0.748 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.73 E-value=0.67 Score=48.14 Aligned_cols=89 Identities=25% Similarity=0.223 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeC-CcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVS-KDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
+-++|.+||+.||||||-...++..+ .....=..+..++.. ......+-++.-++-++.+-. ...+..++...+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 47899999999999975444444444 112222345555543 334555556666666666543 34455555555443
Q ss_pred HHccCceEEEecccc
Q 048789 253 ILSKKKFVLLLDDIW 267 (724)
Q Consensus 253 ~l~~k~~LlVlDdv~ 267 (724)
. ++. =++.+|-+.
T Consensus 279 l-~~~-d~ILVDTaG 291 (407)
T COG1419 279 L-RDC-DVILVDTAG 291 (407)
T ss_pred h-hcC-CEEEEeCCC
Confidence 2 233 344556553
No 431
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.14 Score=48.72 Aligned_cols=45 Identities=27% Similarity=0.308 Sum_probs=34.9
Q ss_pred ccccchhhHHHHHHHhh-------------cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLM-------------EEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++-|.+-.+.+|.+... -+..+-|..+|++|.|||.||++|+++-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 34567766777666542 1467789999999999999999999986
No 432
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.72 E-value=0.097 Score=47.34 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 161 STFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.++++.+.+.+ +++.++|..|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 457777777754 799999999999999999998874
No 433
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.72 E-value=0.1 Score=53.15 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=41.1
Q ss_pred CccccchhhHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.++.++++++.+.. ..-+++.++|+.|.||||+|+.+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999998864 356799999999999999999998887
No 434
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.72 E-value=0.25 Score=45.25 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=59.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEE--EEEEeCCcCCHHHHHHHHHH---HcCCCccccCCcC-------
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFV--IWIVVSKDLQLAKIQEGIAK---KMGLFNESWQSKG------- 242 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~--~wv~v~~~~~~~~~~~~i~~---~l~~~~~~~~~~~------- 242 (724)
.+.|-|++..|.||||.|-.+.-+.. ...+... =|+.-.........+....- +.+... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~-~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGF-TWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCC-eecCCCcHHHHHH
Confidence 46788999999999999988877762 2233321 12332212233333333200 011100 001111
Q ss_pred HHHHHHHHHHHHccCc-eEEEeccccChh-----chhhccCCCCCCCCCCcEEEEecCCh
Q 048789 243 LEEKANKIFKILSKKK-FVLLLDDIWELV-----DLAQVGLPVSSCASSSNKIVFTTREI 296 (724)
Q Consensus 243 ~~~~~~~l~~~l~~k~-~LlVlDdv~~~~-----~~~~l~~~~~~~~~g~s~iliTtr~~ 296 (724)
..+..+..++.+...+ =++|||++-... +.+++...+.....+ .-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~-~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGH-QHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCC-CEEEEECCCC
Confidence 2223344455554444 499999986432 222333333322333 7899999985
No 435
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.72 E-value=0.33 Score=49.64 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeC-CcCCHHHHHHHHHHHcCCCccc----cCCcCHH----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVS-KDLQLAKIQEGIAKKMGLFNES----WQSKGLE---- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 244 (724)
.-..++|+|..|+|||||++.+.+.. . -+..+..-++ ...+..++.......-+..... ....+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44689999999999999999988765 1 1333334443 2335566555555432211100 0111111
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccC
Q 048789 245 --EKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
...-.+-+++ +++.+|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1122222333 58999999999844
No 436
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.69 E-value=0.18 Score=53.62 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCcc----ccCCcCHH----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNE----SWQSKGLE---- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 244 (724)
.-..++|+|..|+|||||++++++.. . .+.++++-++... ...++....+..-+.... .....+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-D----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-C----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998765 1 2455556665543 344555544443221110 00111111
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccC
Q 048789 245 --EKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
..+-.+-+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122233333 58999999999843
No 437
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.65 E-value=0.11 Score=53.09 Aligned_cols=49 Identities=29% Similarity=0.305 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEG 226 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 226 (724)
.+++.+.|.|||||||+|.+.+-... .....+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988666652 22244777777777676666554
No 438
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.64 E-value=0.058 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|+.|+||||||+.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999876
No 439
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.63 E-value=0.27 Score=52.13 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCC--CCCc---------EEEEEEeCCcCCHHHHHHHHHHHcCCCccc-----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTP--NSFD---------FVIWIVVSKDLQLAKIQEGIAKKMGLFNES----- 237 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----- 237 (724)
.-.-++|.|-.|+|||||+.++.+.. ... ...| .++++-++......+.+...+..-+.....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 34579999999999999999998876 210 0022 667777887766666666666554421110
Q ss_pred cCCcCH-H-----HHHHHHHHHH---ccCceEEEeccccC
Q 048789 238 WQSKGL-E-----EKANKIFKIL---SKKKFVLLLDDIWE 268 (724)
Q Consensus 238 ~~~~~~-~-----~~~~~l~~~l---~~k~~LlVlDdv~~ 268 (724)
....+. . ..+-.+-+++ +++.+|+++||+-.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011111 1 1122334444 46999999999854
No 440
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.62 E-value=0.081 Score=47.08 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=32.0
Q ss_pred ccchhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 157 VGLQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 157 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
||.-..+.++.+.+.. ....-|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777766654 445678999999999999999999876
No 441
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.62 E-value=0.34 Score=52.49 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=51.6
Q ss_pred HHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---c
Q 048789 164 DGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---W 238 (724)
Q Consensus 164 ~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~ 238 (724)
..+-+.|.. ..-.++.|.|.+|+|||||+.++...... .-..++|++.... ..++.. -+..++...+. .
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~ 154 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVL 154 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEc
Confidence 344444443 24569999999999999999999777621 1235778775433 333322 22344432211 1
Q ss_pred CCcCHHHHHHHHHHHHccCceEEEecccc
Q 048789 239 QSKGLEEKANKIFKILSKKKFVLLLDDIW 267 (724)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (724)
...+.+++...+. +.+.-++|+|.+.
T Consensus 155 ~e~~~~~I~~~i~---~~~~~~vVIDSIq 180 (454)
T TIGR00416 155 SETNWEQICANIE---EENPQACVIDSIQ 180 (454)
T ss_pred CCCCHHHHHHHHH---hcCCcEEEEecch
Confidence 1223333333322 2245578888874
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.61 E-value=0.48 Score=52.08 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=57.8
Q ss_pred HHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc----
Q 048789 164 DGVWKCLMEE--QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---- 237 (724)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---- 237 (724)
..+-+.|..+ .-.++.|.|.+|+|||||+.++..... ..-+.+++++..+. ..++.+.+ +.++.+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhC
Confidence 3444444442 457999999999999999999888762 23356777765543 55555553 445432211
Q ss_pred ---------cCCcCHHHHHHHHHHHHcc-CceEEEeccc
Q 048789 238 ---------WQSKGLEEKANKIFKILSK-KKFVLLLDDI 266 (724)
Q Consensus 238 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 266 (724)
......++....+.+.+.. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0112335556666665543 4446777776
No 443
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.58 E-value=0.064 Score=47.79 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998776654
No 444
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.58 E-value=0.08 Score=51.02 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+...|.++||+|+||||..+.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45688899999999999999999988
No 445
>PRK13975 thymidylate kinase; Provisional
Probab=93.57 E-value=0.066 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999988
No 446
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.011 Score=54.37 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=49.5
Q ss_pred CCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccC-CCCCCCCccEEeecCCCCCCC
Q 048789 603 SAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHS-KALPFPCLKEMSVDGCPLLKK 681 (724)
Q Consensus 603 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~-~~~~~p~L~~L~i~~C~~L~~ 681 (724)
.++.++.|.+.+|..+.+.-. ..-.+.+|+|+.|+|++|+++++-.. ....|++|+.|.|.+.|....
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L-----------~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCL-----------ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHHH-----------HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 467788888888887776522 12233688999999999998887543 345688888888888777665
Q ss_pred C
Q 048789 682 L 682 (724)
Q Consensus 682 l 682 (724)
+
T Consensus 192 ~ 192 (221)
T KOG3864|consen 192 L 192 (221)
T ss_pred h
Confidence 4
No 447
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.66 Score=45.34 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=36.7
Q ss_pred ccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++-|-+..+++|.+...- ..++-|-++|.+|.|||-||++|+|.-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 456788888888876531 246678899999999999999999986
No 448
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.56 E-value=0.17 Score=53.56 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC-cCCHHHHHHHHHHHcCCCccc----cCCcCH-H---
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK-DLQLAKIQEGIAKKMGLFNES----WQSKGL-E--- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~-~--- 244 (724)
.-..++|+|..|+|||||++.+.... +. +..+.+.++. .....++.+..+..-+....- ....+. .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---DA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---CC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 44689999999999999999888765 11 2222233332 334555555544432211100 011111 1
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccC
Q 048789 245 --EKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
..+-.+-+++ +++.+|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122233344 57999999999854
No 449
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.55 E-value=0.075 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 450
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.55 E-value=0.04 Score=28.96 Aligned_cols=16 Identities=50% Similarity=0.872 Sum_probs=7.3
Q ss_pred cCCeeecCCCCccccc
Q 048789 438 SLQHLDLSHSRIERLP 453 (724)
Q Consensus 438 ~L~~L~L~~~~i~~Lp 453 (724)
+|++|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666665554
No 451
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.54 E-value=0.3 Score=48.31 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhccCCCCCCcEE-EEEEeCCcC-CHHHHHHHHHHHcCCCcc----ccCCcCHH--
Q 048789 174 QMGIVGLYGMGGVGKTTLL-TQINNKFLDTPNSFDFV-IWIVVSKDL-QLAKIQEGIAKKMGLFNE----SWQSKGLE-- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~-~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~-- 244 (724)
+-.-++|+|..|+|||+|| ..+.+.. .-+.+ +++-+++.. ...++.+.+...=..... .....+..
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3457999999999999995 6666543 22343 666666553 456666666543211100 00111111
Q ss_pred --------HHHHHHHHHHccCceEEEeccccCh
Q 048789 245 --------EKANKIFKILSKKKFVLLLDDIWEL 269 (724)
Q Consensus 245 --------~~~~~l~~~l~~k~~LlVlDdv~~~ 269 (724)
..++.++. +++.+|+|+||+-..
T Consensus 143 ~~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMD--NGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEEcChHHH
Confidence 12233333 579999999999543
No 452
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.52 E-value=0.072 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...|.|+|+.|+||||+++.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999876
No 453
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.49 E-value=0.23 Score=52.90 Aligned_cols=93 Identities=23% Similarity=0.307 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCccc----cCCcCH-----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNES----WQSKGL----- 243 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~----- 243 (724)
.-.-++|.|.+|+|||+|+.++.... . +.+-+.++++-++... ...++.+.+...=.....- ....+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 44579999999999999999988775 2 2334788888887664 4556666665431111000 011111
Q ss_pred -HHHHHHHHHHH---ccCceEEEeccccC
Q 048789 244 -EEKANKIFKIL---SKKKFVLLLDDIWE 268 (724)
Q Consensus 244 -~~~~~~l~~~l---~~k~~LlVlDdv~~ 268 (724)
...+-.+-+++ +++.+|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 11223334444 46899999999854
No 454
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.48 E-value=0.071 Score=44.45 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQIN 196 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~ 196 (724)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999975
No 455
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.47 E-value=0.091 Score=47.69 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEE
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWI 212 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 212 (724)
|++|+|+.|+||||++..+.... + ...+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l-~-~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL-K-ARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-H-hcCCeEEEEe
Confidence 58999999999999999999987 2 2234444443
No 456
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.47 E-value=3 Score=48.60 Aligned_cols=179 Identities=17% Similarity=0.157 Sum_probs=86.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcc--C-----------CCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccC
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFL--D-----------TPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQ 239 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~--~-----------~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 239 (724)
.+.+++.|.|+.+.||||+.+.+.-... . .-..|+. ++..++...++..-.
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~l--------------- 388 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSL--------------- 388 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhch---------------
Confidence 3457899999999999999988754310 0 0111222 222333221111110
Q ss_pred CcCHHHHHHHHHHHHc--cCceEEEeccccChhc---hhhc----cCCCCCCCCCCcEEEEecCChHHHhhccCccceee
Q 048789 240 SKGLEEKANKIFKILS--KKKFVLLLDDIWELVD---LAQV----GLPVSSCASSSNKIVFTTREIEVCGQMEAHRSFKV 310 (724)
Q Consensus 240 ~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~---~~~l----~~~~~~~~~g~s~iliTtr~~~v~~~~~~~~~~~l 310 (724)
.+...-...+...+. ..+-|+++|+.-...+ -..+ ...+. ..| +.+|+||...++.........+.-
T Consensus 389 -StfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~-~~vIitTH~~el~~~~~~~~~v~~ 464 (782)
T PRK00409 389 -STFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRG-AKIIATTHYKELKALMYNREGVEN 464 (782)
T ss_pred -hHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCC-CEEEEECChHHHHHHHhcCCCeEE
Confidence 111111122222222 4777999999864322 1112 12221 235 899999999887654432221111
Q ss_pred ccCC-hHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcCCChhHHHHHHHHHh
Q 048789 311 ECLG-FDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASRKTPREWEHAIEVLR 379 (724)
Q Consensus 311 ~~L~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~ 379 (724)
..+. +.+... |...+ ... ..-...|-+|++.+ |+|-.+..-|..+... .....+.++..+.
T Consensus 465 ~~~~~d~~~l~-~~Ykl-~~G----~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~ 526 (782)
T PRK00409 465 ASVEFDEETLR-PTYRL-LIG----IPGKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLE 526 (782)
T ss_pred EEEEEecCcCc-EEEEE-eeC----CCCCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHH
Confidence 1110 111100 00000 001 11133477777777 8999888888776553 3445555554443
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.46 E-value=0.3 Score=52.66 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC-cCCHHHHHHHHHHHcCC
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK-DLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~ 233 (724)
.+|++++|+.|+||||.+..++..+. .+..-..+..+.... .....+-++...+.++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 36999999999999999999988762 121112344454332 12233344444555444
No 458
>PRK14527 adenylate kinase; Provisional
Probab=93.44 E-value=0.076 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|+|++|+||||+|+.+...+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 459
>PF13245 AAA_19: Part of AAA domain
Probab=93.44 E-value=0.19 Score=39.15 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=18.7
Q ss_pred CceEEEEEcCCCCcHHHH-HHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTL-LTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtL-a~~v~~~~ 199 (724)
+.+++.|.|.+|.|||++ ++.+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788899999999944 44444443
No 460
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.35 Score=55.57 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=64.5
Q ss_pred ccccchhhHHHHHHHhhc------C--CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLME------E--QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEG 226 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 226 (724)
.++|.++.+..|.+.+.. + ......+.|+.|+|||-||++++... .+..+..+-++.+.- ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh-
Confidence 467777777777777653 2 35678899999999999999999887 455556665555432 22
Q ss_pred HHHHcCCCccccCCcCHHHHHHHHHHHHccCce-EEEeccccCh
Q 048789 227 IAKKMGLFNESWQSKGLEEKANKIFKILSKKKF-VLLLDDIWEL 269 (724)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 269 (724)
+.+-++.+.. ---.+....|-+.++.++| +++||||...
T Consensus 633 vskligsp~g----yvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPPG----YVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCcc----cccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 2222233221 1122233467777777776 5667999754
No 461
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.40 E-value=0.1 Score=57.74 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=38.4
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+++|.+..++.+...+......-|.|+|.+|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999998887766656677899999999999999998754
No 462
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.40 E-value=0.11 Score=56.76 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=42.2
Q ss_pred ccccchhhHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE
Q 048789 155 TVVGLQSTFDGVWKCLME-----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV 213 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (724)
+++--.+-++++..||.. ...+++.+.|++|+||||.++.+++.. .|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 344456678888888865 235689999999999999999999886 467777865
No 463
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.38 E-value=0.34 Score=55.03 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|+++|+.|+||||.+..++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4699999999999999998888765
No 464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.37 E-value=0.068 Score=48.56 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 048789 178 VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|.++|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 465
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.35 E-value=0.058 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 048789 178 VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.34 E-value=0.067 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 467
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.34 E-value=0.17 Score=48.16 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 468
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.33 E-value=0.22 Score=49.77 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHH
Q 048789 163 FDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQ 224 (724)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 224 (724)
.+++..++..+ .-|.+.|.+|+|||++|+.++... .. ..+.++.....+..+++
T Consensus 11 ~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 34444444432 356789999999999999998754 22 23445555555555443
No 469
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.32 E-value=0.072 Score=48.17 Aligned_cols=25 Identities=40% Similarity=0.682 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++++|+|+.|+|||||+..+....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4699999999999999999999988
No 470
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.32 E-value=0.073 Score=49.77 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.|++|+|++|+|||||.+.+..-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44699999999999999999987654
No 471
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.31 E-value=0.087 Score=50.24 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|.|+|.+|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 472
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.27 E-value=0.067 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999886
No 473
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.27 E-value=0.098 Score=53.40 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHH
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQE 225 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 225 (724)
+++.+.|-||+||||+|...+-...+ + -..+.-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~--G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-R--GKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-T--TS-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-C--CCCeeEeecCCCccHHHHhC
Confidence 68899999999999999887777632 2 23455566655555555443
No 474
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.26 E-value=5.5 Score=43.03 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
.-.++.|-|.+|+|||++|..+.... ..+. -..++|++. .-+..++...++...
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~-a~~~-g~~v~~fSl--Em~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENV-ALRE-GKPVLFFSL--EMSAEQLGERLLASK 246 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHH-HHhC-CCcEEEEEC--CCCHHHHHHHHHHHH
Confidence 34588999999999999999998665 2122 234566654 346777777776654
No 475
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.25 E-value=0.31 Score=52.04 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCcc----ccCCcCHH----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNE----SWQSKGLE---- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 244 (724)
.-..++|.|..|+|||||+.++..... ..+=+.++++-++... ...++.+.+...=..... .....+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 445899999999999999999877652 1112467777776553 456666666653211110 00111111
Q ss_pred --HHHHHHHHHH---ccCceEEEeccccC
Q 048789 245 --EKANKIFKIL---SKKKFVLLLDDIWE 268 (724)
Q Consensus 245 --~~~~~l~~~l---~~k~~LlVlDdv~~ 268 (724)
...-.+-+++ +++.+|+++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1223344444 67999999999843
No 476
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.22 E-value=0.14 Score=52.62 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
....+.|+|..|+||||+++.+..... ... .++.+.-.....+.. .... ++..... ......-...+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~---~~~-~iv~ied~~El~~~~--~~~~-~l~~~~~-~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP---KDE-RIITIEDTREIFLPH--PNYV-HLFYSKG-GQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC---ccc-cEEEEcCccccCCCC--CCEE-EEEecCC-CCCcCccCHHHHHHHH
Confidence 446999999999999999999987762 111 122221111111100 0000 0000000 0111122344556667
Q ss_pred HccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHH
Q 048789 254 LSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEV 298 (724)
Q Consensus 254 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v 298 (724)
++...=.+++|++...+.+.-+.. ...+. .-++.|+...+.
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a-~~~g~---~~~i~T~Ha~~~ 255 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRA-VNTGH---PGSITTLHAGSP 255 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHH-HhcCC---CeEEEEEeCCCH
Confidence 777888899999987655543322 22222 224666665443
No 477
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.21 E-value=0.25 Score=52.44 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCcc----ccCCcCHHH---
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNE----SWQSKGLEE--- 245 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 245 (724)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+++.. ...++....+..-+.... .....+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999998875 12567777776653 445555444332111110 001111111
Q ss_pred ---HHHHHHHHH--ccCceEEEeccccC
Q 048789 246 ---KANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 246 ---~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
.+-.+-+++ +++++|+++||+-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112223333 58999999999854
No 478
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.16 E-value=0.21 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 479
>PRK05748 replicative DNA helicase; Provisional
Probab=93.16 E-value=4.8 Score=43.86 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.-.++.|-|.+|+|||++|..+..+.. .+.. ..+++++. .-+..++...++...+
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a-~~~g-~~v~~fSl--Ems~~~l~~R~l~~~~ 256 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVA-TKTD-KNVAIFSL--EMGAESLVMRMLCAEG 256 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHH-HhCC-CeEEEEeC--CCCHHHHHHHHHHHhc
Confidence 345899999999999999999887752 1112 24555543 3456677777765543
No 480
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.14 E-value=0.096 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINN 197 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~ 197 (724)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 481
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.14 E-value=0.11 Score=50.79 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=22.2
Q ss_pred EEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe
Q 048789 180 LYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV 214 (724)
Q Consensus 180 I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 214 (724)
|+|++|+||||+++.+.+... ..-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~---~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE---SNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT---TT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHH---hccCCceEEEc
Confidence 689999999999999999882 22234444553
No 482
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.12 E-value=0.073 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 048789 178 VGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~ 198 (724)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.12 E-value=0.08 Score=48.75 Aligned_cols=22 Identities=41% Similarity=0.609 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 048789 178 VGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 178 i~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|.|.|.+|+||||+++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 484
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.11 E-value=4.6 Score=43.47 Aligned_cols=137 Identities=20% Similarity=0.281 Sum_probs=69.8
Q ss_pred ccchhhHHHHHHHhh-c-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeC-------C-----------
Q 048789 157 VGLQSTFDGVWKCLM-E-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVS-------K----------- 216 (724)
Q Consensus 157 vGr~~~~~~l~~~L~-~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-------~----------- 216 (724)
+|.+..- .|-+-|. . +.-..|++||+.|+|||||.+.++.+.....+.-..-...... .
T Consensus 397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence 5555444 3333332 2 3446899999999999999999998874322211110000000 0
Q ss_pred ------cCCHHHHHHHHHHHcCCCccccCCcCH-----HHHHHHHHHHH-ccCceEEEeccccChhchh---hccCCCCC
Q 048789 217 ------DLQLAKIQEGIAKKMGLFNESWQSKGL-----EEKANKIFKIL-SKKKFVLLLDDIWELVDLA---QVGLPVSS 281 (724)
Q Consensus 217 ------~~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~---~l~~~~~~ 281 (724)
.-...+..+.|+...+...+. +.... .+....+.-.+ -..+-+||||+--+.-+.+ .+..++..
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~-q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDA-QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccc-cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc
Confidence 012345566677766665321 22222 22223333322 3467899999876543332 22223333
Q ss_pred CCCCCcEEEEecCChHH
Q 048789 282 CASSSNKIVFTTREIEV 298 (724)
Q Consensus 282 ~~~g~s~iliTtr~~~v 298 (724)
... -||++|.+..+
T Consensus 555 ~~G---gvv~vSHDfrl 568 (614)
T KOG0927|consen 555 FPG---GVVLVSHDFRL 568 (614)
T ss_pred cCC---ceeeeechhhH
Confidence 322 37777776544
No 485
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.10 E-value=0.25 Score=46.01 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=60.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe---CCcCCHHHHHHHHH--H--HcCCCccccCCcC----
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV---SKDLQLAKIQEGIA--K--KMGLFNESWQSKG---- 242 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v---~~~~~~~~~~~~i~--~--~l~~~~~~~~~~~---- 242 (724)
....|-|+|..|-||||.|..+.-+.. ...+. +..+.. .........+..+- . +.+... .+...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~-~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGF-TWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCC-cccCCCcHHH
Confidence 447899999999999999988877762 22222 222221 21223333333210 0 001100 001111
Q ss_pred ---HHHHHHHHHHHHcc-CceEEEeccccChh-----chhhccCCCCCCCCCCcEEEEecCCh
Q 048789 243 ---LEEKANKIFKILSK-KKFVLLLDDIWELV-----DLAQVGLPVSSCASSSNKIVFTTREI 296 (724)
Q Consensus 243 ---~~~~~~~l~~~l~~-k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~g~s~iliTtr~~ 296 (724)
..+..+..++.+.. +-=++|||++-... +.+++...+.....+ ..||+|-|..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~-~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGM-QHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCC-CEEEEECCCC
Confidence 12233444555544 44599999986432 223333333332333 7899999975
No 486
>PLN02200 adenylate kinase family protein
Probab=93.10 E-value=0.094 Score=51.31 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|.|++|+||||+|+.+...+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 487
>PRK13948 shikimate kinase; Provisional
Probab=93.09 E-value=0.1 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....|.++|+.|+||||+++.+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999886
No 488
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.07 E-value=0.15 Score=47.96 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=31.3
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhcc
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFL 200 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 200 (724)
+++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+..-.+
T Consensus 4 dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 578887777666554443 46899999999999999999987653
No 489
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.03 E-value=0.4 Score=45.31 Aligned_cols=119 Identities=23% Similarity=0.106 Sum_probs=65.2
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcE--EEEEEeCCcCCHHHHHHHHHHHcCCCc--------
Q 048789 166 VWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDF--VIWIVVSKDLQLAKIQEGIAKKMGLFN-------- 235 (724)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~--~~wv~v~~~~~~~~~~~~i~~~l~~~~-------- 235 (724)
++..|......-..|.|++|+||||+.+.+++-.......|-. +.-|+-+. +|+..+..-.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 5555655666668899999999999999998877444445532 22232211 1211111000
Q ss_pred cccCCcC-HHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHh
Q 048789 236 ESWQSKG-LEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCG 300 (724)
Q Consensus 236 ~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~ 300 (724)
+-..... .+.+...++ .-.+=.+|+|++-+..+...+...+ ..| -+++.|..-..+..
T Consensus 199 dVld~cpk~~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~---~~G-Vkli~TaHG~~ied 257 (308)
T COG3854 199 DVLDPCPKAEGMMMAIR---SMSPEVIIVDEIGTEEDALAILTAL---HAG-VKLITTAHGNGIED 257 (308)
T ss_pred hhcccchHHHHHHHHHH---hcCCcEEEEeccccHHHHHHHHHHH---hcC-cEEEEeeccccHHH
Confidence 0001111 111222222 2356689999998877766655443 345 77777776555443
No 490
>PRK13946 shikimate kinase; Provisional
Probab=93.00 E-value=0.087 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+.|.++|+.|+||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999986
No 491
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.97 E-value=0.099 Score=49.13 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998875
No 492
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.95 E-value=0.71 Score=46.51 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.-.++.|.|.+|+||||++.+++.... ..+-..++|++... ...++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 345889999999999999999887752 22235678887655 345566665544
No 493
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=92.95 E-value=0.28 Score=52.31 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCccc----cCCcC-HH---
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNES----WQSKG-LE--- 244 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~-~~--- 244 (724)
.-..++|+|..|+|||||++.+.... ..+.++...+... .+..++...+...-+....- ..... ..
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 44589999999999999999987654 1234444444433 24555555554432221100 00111 11
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccC
Q 048789 245 --EKANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
.....+-+++ +++.+|+++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1122233333 58999999999854
No 494
>PRK04182 cytidylate kinase; Provisional
Probab=92.92 E-value=0.094 Score=49.10 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999876
No 495
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.89 E-value=0.23 Score=50.02 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=40.7
Q ss_pred CCccccchhhHHH---HHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc
Q 048789 153 PATVVGLQSTFDG---VWKCLMEE--QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD 207 (724)
Q Consensus 153 ~~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~ 207 (724)
.+-+||..+..+. |++++..+ .-+.|.|+|++|.|||+||-.+.... ...-.|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCce
Confidence 4568897665543 66777664 45799999999999999999999998 3344554
No 496
>PRK08760 replicative DNA helicase; Provisional
Probab=92.89 E-value=7.2 Score=42.69 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
.-.++.|-|.+|+|||++|..++.... .+... .+++++ -.-+..++...++...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a-~~~g~-~V~~fS--lEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAA-IKSKK-GVAVFS--MEMSASQLAMRLISSN 281 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHH-HhcCC-ceEEEe--ccCCHHHHHHHHHHhh
Confidence 345889999999999999999887652 12222 344443 3334566666666543
No 497
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=92.85 E-value=0.4 Score=47.63 Aligned_cols=59 Identities=31% Similarity=0.395 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCc-------EEEEEEeCCc-CCHHHHHHHHHHHcCCCc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFD-------FVIWIVVSKD-LQLAKIQEGIAKKMGLFN 235 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-------~~~wv~v~~~-~~~~~~~~~i~~~l~~~~ 235 (724)
++.|+|.||+||||++-.++=.....++-|. .+++|+.... .++-.-++.+..+++.+.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4556699999999998776554433344443 4666665433 345556677777877654
No 498
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.84 E-value=0.13 Score=49.05 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
..+++.|.|+.|.||||+.+.+...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999887643
No 499
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.84 E-value=0.27 Score=51.15 Aligned_cols=66 Identities=27% Similarity=0.267 Sum_probs=47.6
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
.++|.+.....+...+..+ +-+.+.|.+|+|||++|+.+.... . -..+++.........++.....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcCchh
Confidence 3788887777776666544 368899999999999999999987 2 2344566666666666654443
No 500
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.64 Score=44.13 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHccCceEEEeccccChhchhhcc------CCCCCCCCCCcEEEEecCChHHHhhccCccceee
Q 048789 244 EEKANKIFKILSKKKFVLLLDDIWELVDLAQVG------LPVSSCASSSNKIVFTTREIEVCGQMEAHRSFKV 310 (724)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~------~~~~~~~~g~s~iliTtr~~~v~~~~~~~~~~~l 310 (724)
+.....+.+.+--++=+.|||+-++--+.+.+. ..+. ..+ +-+++.|..+.++....++.+|-+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~-~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEG-RGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCC-CeEEEEecHHHHHhhcCCCEEEEE
Confidence 344556666666677899999987644333221 1122 124 678888999999988877666544
Done!