Query 048789
Match_columns 724
No_of_seqs 393 out of 4094
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 23:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2E-30 6.9E-35 287.8 20.4 199 157-365 131-343 (549)
2 1vt4_I APAF-1 related killer D 99.9 6.5E-26 2.2E-30 254.2 13.8 200 155-373 129-349 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 5.6E-25 1.9E-29 270.7 17.8 215 153-381 123-348 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 3.4E-23 1.2E-27 233.5 18.4 212 153-381 123-348 (591)
5 4fcg_A Uncharacterized protein 99.8 5.1E-20 1.7E-24 190.8 14.7 237 416-709 81-319 (328)
6 4fcg_A Uncharacterized protein 99.8 5.5E-20 1.9E-24 190.6 12.9 220 391-675 80-310 (328)
7 3o6n_A APL1; leucine-rich repe 99.8 2.8E-19 9.6E-24 190.6 15.3 273 391-698 68-349 (390)
8 3oja_B Anopheles plasmodium-re 99.8 3.3E-19 1.1E-23 200.8 14.4 274 390-698 73-355 (597)
9 4fmz_A Internalin; leucine ric 99.8 1.5E-18 5E-23 182.0 15.0 252 385-682 59-326 (347)
10 1ogq_A PGIP-2, polygalacturona 99.8 4.8E-19 1.6E-23 182.4 10.0 250 392-684 50-309 (313)
11 2id5_A Lingo-1, leucine rich r 99.8 9.4E-18 3.2E-22 183.9 20.7 261 392-685 32-314 (477)
12 3o6n_A APL1; leucine-rich repe 99.8 4E-18 1.4E-22 181.7 16.0 257 389-685 42-313 (390)
13 1xku_A Decorin; proteoglycan, 99.8 6.4E-18 2.2E-22 175.7 16.4 244 391-677 51-304 (330)
14 3v47_A TOLL-like receptor 5B a 99.8 9.6E-18 3.3E-22 182.8 17.1 284 388-696 50-403 (455)
15 4ecn_A Leucine-rich repeat pro 99.7 3.1E-18 1E-22 197.5 13.4 286 390-699 489-838 (876)
16 2ft3_A Biglycan; proteoglycan, 99.7 2.9E-18 1E-22 178.4 12.0 244 391-678 53-306 (332)
17 3oja_B Anopheles plasmodium-re 99.7 9.1E-18 3.1E-22 189.0 15.3 256 390-685 49-319 (597)
18 4eco_A Uncharacterized protein 99.7 6.7E-18 2.3E-22 191.2 13.6 148 388-538 202-394 (636)
19 2id5_A Lingo-1, leucine rich r 99.7 1.6E-17 5.5E-22 182.1 15.8 255 387-677 51-331 (477)
20 2z80_A TOLL-like receptor 2, v 99.7 9.3E-18 3.2E-22 176.2 13.0 255 391-677 51-312 (353)
21 3zyi_A Leucine-rich repeat-con 99.7 1.4E-17 4.9E-22 180.9 14.0 221 392-651 75-299 (452)
22 4ecn_A Leucine-rich repeat pro 99.7 1.6E-17 5.3E-22 191.6 14.7 180 388-588 444-659 (876)
23 3vq2_A TLR4, TOLL-like recepto 99.7 6.5E-17 2.2E-21 183.0 18.3 109 388-497 52-165 (606)
24 3t6q_A CD180 antigen; protein- 99.7 3E-17 1E-21 185.8 15.4 261 393-683 255-539 (606)
25 3zyj_A Leucine-rich repeat-con 99.7 2.9E-17 1E-21 177.8 14.4 221 392-651 64-288 (440)
26 3t6q_A CD180 antigen; protein- 99.7 5.6E-17 1.9E-21 183.6 16.7 106 389-495 54-163 (606)
27 1ogq_A PGIP-2, polygalacturona 99.7 1.7E-17 5.9E-22 170.7 11.3 230 388-659 72-308 (313)
28 1o6v_A Internalin A; bacterial 99.7 7.7E-17 2.6E-21 175.9 16.7 102 385-493 61-164 (466)
29 4fmz_A Internalin; leucine ric 99.7 9.1E-17 3.1E-21 168.3 16.3 235 390-677 108-344 (347)
30 3bz5_A Internalin-J, INLJ; leu 99.7 4.4E-17 1.5E-21 176.5 14.2 123 389-536 61-185 (457)
31 2z63_A TOLL-like receptor 4, v 99.7 1.7E-16 5.9E-21 178.2 19.4 107 388-496 48-160 (570)
32 2z7x_B TOLL-like receptor 1, v 99.7 2E-16 6.8E-21 175.4 19.2 102 392-497 21-127 (520)
33 3v47_A TOLL-like receptor 5B a 99.7 4.4E-17 1.5E-21 177.5 13.7 264 388-679 75-408 (455)
34 2z81_A CD282 antigen, TOLL-lik 99.7 5.4E-17 1.8E-21 181.4 14.6 108 389-496 47-159 (549)
35 2z66_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 168.3 11.2 224 392-677 28-259 (306)
36 4eco_A Uncharacterized protein 99.7 1.5E-17 5.3E-22 188.3 9.1 67 429-496 198-284 (636)
37 3rgz_A Protein brassinosteroid 99.7 6.9E-17 2.4E-21 187.3 14.6 272 391-684 393-722 (768)
38 2z63_A TOLL-like receptor 4, v 99.7 1.2E-16 4.3E-21 179.3 16.0 107 388-495 72-187 (570)
39 3j0a_A TOLL-like receptor 5; m 99.7 5.7E-16 1.9E-20 181.5 21.9 133 390-533 22-160 (844)
40 1o6v_A Internalin A; bacterial 99.7 2.1E-16 7.1E-21 172.5 16.3 76 388-467 86-163 (466)
41 3rgz_A Protein brassinosteroid 99.7 5E-17 1.7E-21 188.5 11.3 269 390-685 267-557 (768)
42 1xku_A Decorin; proteoglycan, 99.7 4.5E-16 1.5E-20 161.7 17.1 262 392-703 31-308 (330)
43 3vq2_A TLR4, TOLL-like recepto 99.7 7.8E-17 2.7E-21 182.4 12.0 180 391-585 31-216 (606)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.1E-15 3.7E-20 171.1 20.7 103 392-497 52-158 (562)
45 1ziw_A TOLL-like receptor 3; i 99.7 3.9E-16 1.3E-20 179.1 16.3 131 392-535 25-159 (680)
46 2z81_A CD282 antigen, TOLL-lik 99.7 1.6E-16 5.6E-21 177.5 12.0 164 391-559 25-207 (549)
47 1ziw_A TOLL-like receptor 3; i 99.7 7E-16 2.4E-20 177.0 17.3 109 388-497 45-157 (680)
48 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-15 4.6E-20 178.4 19.2 112 387-498 43-161 (844)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.4E-15 4.8E-20 170.2 16.5 105 387-497 71-181 (562)
50 2z7x_B TOLL-like receptor 1, v 99.6 3.9E-15 1.3E-19 165.0 18.7 122 395-534 3-128 (520)
51 2ft3_A Biglycan; proteoglycan, 99.6 1.1E-15 3.6E-20 159.0 12.0 250 387-677 73-331 (332)
52 3zyj_A Leucine-rich repeat-con 99.6 9.8E-16 3.4E-20 165.8 12.1 203 387-616 83-290 (440)
53 3zyi_A Leucine-rich repeat-con 99.6 1.2E-15 4.1E-20 165.7 12.2 203 387-616 94-301 (452)
54 3qfl_A MLA10; coiled-coil, (CC 99.6 1.6E-15 5.6E-20 128.2 10.1 83 9-98 1-84 (115)
55 3bz5_A Internalin-J, INLJ; leu 99.6 2.9E-15 1E-19 162.1 14.6 172 388-594 81-254 (457)
56 3o53_A Protein LRIM1, AGAP0063 99.6 2.4E-16 8.2E-21 162.6 5.4 242 390-682 32-278 (317)
57 1ozn_A Reticulon 4 receptor; N 99.6 1.8E-15 6.2E-20 153.5 11.1 200 391-616 31-236 (285)
58 1ozn_A Reticulon 4 receptor; N 99.6 3.9E-15 1.3E-19 151.1 12.7 218 395-677 14-236 (285)
59 3oja_A Leucine-rich immune mol 99.6 3.6E-15 1.2E-19 162.9 12.2 235 389-674 31-270 (487)
60 1wwl_A Monocyte differentiatio 99.6 1E-15 3.5E-20 157.4 7.3 222 394-676 65-306 (312)
61 2z80_A TOLL-like receptor 2, v 99.6 3.9E-15 1.3E-19 156.1 11.1 157 388-559 72-233 (353)
62 3o53_A Protein LRIM1, AGAP0063 99.6 4.3E-15 1.5E-19 153.1 10.0 235 393-678 11-249 (317)
63 4g8a_A TOLL-like receptor 4; l 99.6 2.5E-14 8.5E-19 162.8 17.2 108 388-497 72-185 (635)
64 2xwt_C Thyrotropin receptor; s 99.6 8.7E-15 3E-19 144.3 11.3 201 417-679 32-239 (239)
65 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-14 4.4E-19 161.9 13.5 153 392-587 61-215 (622)
66 2z62_A TOLL-like receptor 4, v 99.5 1.2E-14 4E-19 146.8 10.9 131 392-534 28-162 (276)
67 2z66_A Variable lymphocyte rec 99.5 5.9E-15 2E-19 151.5 8.6 204 388-616 48-259 (306)
68 3rfs_A Internalin B, repeat mo 99.5 1.8E-14 6.3E-19 144.9 11.8 193 389-652 38-232 (272)
69 4ay9_X Follicle-stimulating ho 99.5 4E-14 1.4E-18 148.0 13.5 123 549-697 129-252 (350)
70 3g06_A SSPH2 (leucine-rich rep 99.5 2.7E-14 9.2E-19 159.3 12.9 215 390-677 79-295 (622)
71 1h6u_A Internalin H; cell adhe 99.5 4.5E-14 1.5E-18 144.7 13.2 188 390-616 39-228 (308)
72 1p9a_G Platelet glycoprotein I 99.5 6.1E-14 2.1E-18 142.2 13.5 195 389-651 7-204 (290)
73 2xwt_C Thyrotropin receptor; s 99.5 1E-14 3.5E-19 143.8 6.9 197 391-616 30-237 (239)
74 2o6q_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 141.2 12.1 194 394-616 18-216 (270)
75 2ast_B S-phase kinase-associat 99.5 1.5E-14 5.2E-19 150.6 6.7 222 393-652 48-282 (336)
76 4g8a_A TOLL-like receptor 4; l 99.5 3.6E-13 1.2E-17 153.1 17.2 93 570-685 466-560 (635)
77 2ast_B S-phase kinase-associat 99.5 3.1E-14 1.1E-18 148.2 7.7 201 392-615 70-282 (336)
78 2ca6_A RAN GTPase-activating p 99.5 1.5E-14 5.2E-19 153.6 4.6 213 391-616 31-285 (386)
79 1p9a_G Platelet glycoprotein I 99.5 9E-14 3.1E-18 141.0 8.8 175 391-616 30-206 (290)
80 3oja_A Leucine-rich immune mol 99.5 3.5E-14 1.2E-18 155.1 6.0 220 388-656 54-276 (487)
81 1jl5_A Outer protein YOPM; leu 99.5 5.8E-14 2E-18 151.8 7.5 177 391-587 10-209 (454)
82 2qen_A Walker-type ATPase; unk 99.4 1.1E-12 3.7E-17 137.3 16.9 196 153-363 11-250 (350)
83 1h6u_A Internalin H; cell adhe 99.4 5.3E-13 1.8E-17 136.7 14.1 176 385-588 56-232 (308)
84 2o6q_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 134.7 12.5 177 392-586 37-218 (270)
85 1jl5_A Outer protein YOPM; leu 99.4 8.9E-13 3E-17 142.5 15.8 223 416-682 131-372 (454)
86 1wwl_A Monocyte differentiatio 99.4 7.8E-14 2.7E-18 143.3 7.0 134 390-534 93-241 (312)
87 2z62_A TOLL-like receptor 4, v 99.4 5.4E-13 1.9E-17 134.5 12.5 180 387-614 47-233 (276)
88 4ay9_X Follicle-stimulating ho 99.4 1E-13 3.5E-18 145.0 7.3 219 392-651 30-255 (350)
89 3rfs_A Internalin B, repeat mo 99.4 1.4E-12 4.9E-17 130.9 14.6 203 412-684 37-240 (272)
90 4glp_A Monocyte differentiatio 99.4 4.1E-13 1.4E-17 137.8 9.8 228 392-676 64-304 (310)
91 2fna_A Conserved hypothetical 99.4 2.3E-12 7.9E-17 135.2 15.5 195 153-364 12-255 (357)
92 1h6t_A Internalin B; cell adhe 99.4 1.5E-12 5E-17 132.1 12.5 170 389-587 43-214 (291)
93 1w5s_A Origin recognition comp 99.4 2.3E-12 7.7E-17 138.2 14.6 204 153-359 21-266 (412)
94 3m19_A Variable lymphocyte rec 99.4 1.8E-12 6.3E-17 128.5 12.4 172 393-616 15-190 (251)
95 3ogk_B Coronatine-insensitive 99.4 5.1E-13 1.7E-17 150.5 8.9 79 391-469 163-252 (592)
96 4ezg_A Putative uncharacterize 99.4 1.5E-12 5E-17 124.0 9.3 151 390-586 42-194 (197)
97 3goz_A Leucine-rich repeat-con 99.3 3.6E-12 1.2E-16 133.9 12.5 241 391-652 21-294 (362)
98 3m19_A Variable lymphocyte rec 99.3 4.9E-12 1.7E-16 125.4 12.5 172 417-652 15-189 (251)
99 1z7x_W Ribonuclease inhibitor; 99.3 3.4E-13 1.2E-17 147.0 3.0 184 393-586 86-297 (461)
100 3ogk_B Coronatine-insensitive 99.3 1.2E-12 4.3E-17 147.4 7.7 102 391-493 219-326 (592)
101 1z7x_W Ribonuclease inhibitor; 99.3 2.9E-13 9.8E-18 147.5 2.2 264 391-677 27-324 (461)
102 1h6t_A Internalin B; cell adhe 99.3 7.3E-12 2.5E-16 127.0 12.0 168 412-616 42-211 (291)
103 1m9s_A Internalin B; cell inva 99.3 4.7E-12 1.6E-16 141.0 10.9 170 389-587 40-211 (605)
104 3goz_A Leucine-rich repeat-con 99.3 2E-12 6.7E-17 135.9 7.0 256 397-677 3-295 (362)
105 1m9s_A Internalin B; cell inva 99.3 1.6E-11 5.4E-16 136.8 14.3 169 412-617 39-209 (605)
106 2o6s_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 122.2 7.5 105 391-496 27-135 (208)
107 2qby_B CDC6 homolog 3, cell di 99.3 6E-11 2.1E-15 125.7 17.5 219 154-378 20-270 (384)
108 4glp_A Monocyte differentiatio 99.3 2.1E-12 7.3E-17 132.5 5.7 133 392-534 91-237 (310)
109 2ca6_A RAN GTPase-activating p 99.3 2.5E-12 8.5E-17 136.5 6.2 208 389-616 57-314 (386)
110 1xeu_A Internalin C; cellular 99.2 4.9E-12 1.7E-16 126.1 6.4 98 390-495 39-138 (263)
111 2p1m_B Transport inhibitor res 99.2 7.5E-12 2.5E-16 141.1 8.7 77 391-467 155-242 (594)
112 2p1m_B Transport inhibitor res 99.2 8.1E-13 2.8E-17 149.0 0.3 79 392-470 105-194 (594)
113 2qby_A CDC6 homolog 1, cell di 99.2 8.2E-11 2.8E-15 124.7 15.2 201 153-356 19-242 (386)
114 2o6s_A Variable lymphocyte rec 99.2 4.3E-11 1.5E-15 114.9 11.4 97 395-495 10-110 (208)
115 2v9t_B SLIT homolog 2 protein 99.2 2.5E-11 8.6E-16 117.4 9.4 129 392-533 32-164 (220)
116 4ezg_A Putative uncharacterize 99.2 5E-11 1.7E-15 113.3 10.5 132 385-534 59-194 (197)
117 2v1u_A Cell division control p 99.2 3.6E-10 1.2E-14 119.8 18.2 220 153-378 18-276 (387)
118 3cvr_A Invasion plasmid antige 99.2 2.8E-11 9.5E-16 133.3 9.6 177 392-619 59-244 (571)
119 2v9t_B SLIT homolog 2 protein 99.2 5.2E-11 1.8E-15 115.2 10.4 98 395-496 14-115 (220)
120 3e6j_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 115.6 10.2 129 391-533 39-171 (229)
121 2ell_A Acidic leucine-rich nuc 99.2 3.1E-11 1.1E-15 111.5 7.6 133 391-534 23-160 (168)
122 2je0_A Acidic leucine-rich nuc 99.1 5.8E-11 2E-15 107.2 7.8 128 390-528 15-147 (149)
123 1fnn_A CDC6P, cell division co 99.1 1.6E-09 5.5E-14 114.8 20.0 200 154-358 17-246 (389)
124 3e6j_A Variable lymphocyte rec 99.1 1.6E-10 5.4E-15 112.6 10.7 110 388-498 60-172 (229)
125 2v70_A SLIT-2, SLIT homolog 2 99.1 1.3E-10 4.6E-15 112.3 9.7 129 392-533 32-165 (220)
126 1njg_A DNA polymerase III subu 99.1 7.8E-10 2.7E-14 108.9 15.4 197 154-362 23-231 (250)
127 2xot_A Amphoterin-induced prot 99.1 9.5E-11 3.2E-15 122.8 8.1 104 392-496 39-147 (361)
128 1a9n_A U2A', U2A'; complex (nu 99.1 2.2E-10 7.7E-15 106.5 9.5 138 388-536 15-155 (176)
129 1xeu_A Internalin C; cellular 99.1 2.2E-10 7.7E-15 114.0 9.3 168 391-588 18-187 (263)
130 2xot_A Amphoterin-induced prot 99.1 8.3E-11 2.8E-15 123.3 5.8 157 395-592 21-182 (361)
131 2chg_A Replication factor C sm 99.1 1.6E-09 5.6E-14 104.9 14.6 184 154-360 17-205 (226)
132 4b8c_D Glucose-repressible alc 99.1 7.6E-11 2.6E-15 134.7 5.7 113 407-534 215-329 (727)
133 2v70_A SLIT-2, SLIT homolog 2 99.1 3.5E-10 1.2E-14 109.3 9.5 110 388-498 53-166 (220)
134 1dce_A Protein (RAB geranylger 99.0 7.8E-12 2.7E-16 138.4 -3.8 176 389-587 346-547 (567)
135 2je0_A Acidic leucine-rich nuc 99.0 4.6E-10 1.6E-14 101.2 8.5 102 389-493 39-148 (149)
136 2ell_A Acidic leucine-rich nuc 99.0 4.3E-10 1.5E-14 103.7 8.4 106 389-497 46-159 (168)
137 1dce_A Protein (RAB geranylger 99.0 7.6E-10 2.6E-14 122.5 11.4 100 393-497 442-545 (567)
138 3cvr_A Invasion plasmid antige 99.0 2.2E-10 7.5E-15 126.2 6.2 170 391-595 79-252 (571)
139 2wfh_A SLIT homolog 2 protein 99.0 1.4E-09 4.6E-14 102.7 10.3 98 395-496 13-113 (193)
140 2o6r_A Variable lymphocyte rec 99.0 1.3E-09 4.5E-14 101.4 9.7 104 392-496 28-135 (177)
141 4b8c_D Glucose-repressible alc 99.0 5.2E-10 1.8E-14 127.8 8.4 110 388-500 220-331 (727)
142 2wfh_A SLIT homolog 2 protein 99.0 1.5E-09 5.2E-14 102.4 9.4 105 391-497 30-138 (193)
143 1w8a_A SLIT protein; signaling 99.0 1.1E-09 3.6E-14 103.5 8.2 103 393-496 30-137 (192)
144 1w8a_A SLIT protein; signaling 98.9 1.1E-09 3.6E-14 103.5 7.1 124 395-534 11-139 (192)
145 1a9n_A U2A', U2A'; complex (nu 98.9 1.2E-09 4E-14 101.6 6.8 102 392-496 42-151 (176)
146 1ds9_A Outer arm dynein; leuci 98.9 1.6E-10 5.3E-15 109.9 -1.0 127 393-535 24-154 (198)
147 1sxj_B Activator 1 37 kDa subu 98.9 9.6E-09 3.3E-13 105.8 12.2 174 154-356 21-206 (323)
148 2r9u_A Variable lymphocyte rec 98.9 4.4E-09 1.5E-13 97.3 8.5 101 394-498 14-118 (174)
149 1ds9_A Outer arm dynein; leuci 98.9 2.8E-10 9.7E-15 108.1 0.4 133 389-527 45-180 (198)
150 3g39_A Variable lymphocyte rec 98.8 5.9E-09 2E-13 96.1 8.3 102 393-498 10-115 (170)
151 2o6r_A Variable lymphocyte rec 98.8 1.9E-08 6.5E-13 93.5 9.6 125 394-534 9-137 (177)
152 3sb4_A Hypothetical leucine ri 98.7 1.3E-07 4.6E-12 97.4 14.2 223 436-696 100-326 (329)
153 1iqp_A RFCS; clamp loader, ext 98.7 7.5E-08 2.5E-12 99.2 10.7 183 154-362 25-215 (327)
154 2r9u_A Variable lymphocyte rec 98.6 3.3E-08 1.1E-12 91.4 7.0 87 391-478 32-122 (174)
155 4fdw_A Leucine rich hypothetic 98.6 1.7E-06 5.8E-11 91.2 19.3 220 393-685 136-363 (401)
156 3te6_A Regulatory protein SIR3 98.6 4.1E-07 1.4E-11 91.4 12.6 170 155-327 21-212 (318)
157 3g39_A Variable lymphocyte rec 98.5 1.1E-07 3.9E-12 87.4 7.5 81 391-471 29-113 (170)
158 2chq_A Replication factor C sm 98.4 8E-07 2.8E-11 91.0 11.7 180 154-359 17-204 (319)
159 3sb4_A Hypothetical leucine ri 98.4 8.2E-07 2.8E-11 91.4 11.2 160 391-594 100-318 (329)
160 1jr3_A DNA polymerase III subu 98.4 3.1E-06 1.1E-10 88.8 14.8 194 154-359 16-221 (373)
161 3un9_A NLR family member X1; l 98.4 1.2E-07 4.1E-12 99.1 3.5 133 392-534 72-224 (372)
162 2ifg_A High affinity nerve gro 98.4 5.7E-07 2E-11 93.4 8.7 100 395-498 11-116 (347)
163 3h4m_A Proteasome-activating n 98.3 2.4E-06 8.3E-11 85.9 12.0 198 154-379 17-259 (285)
164 1jbk_A CLPB protein; beta barr 98.3 4.8E-07 1.6E-11 85.0 6.2 46 154-199 22-67 (195)
165 3bos_A Putative DNA replicatio 98.3 1.2E-06 4.1E-11 85.6 9.0 171 155-358 29-216 (242)
166 2z4s_A Chromosomal replication 98.3 3.8E-06 1.3E-10 89.6 12.3 180 155-356 106-303 (440)
167 2ifg_A High affinity nerve gro 98.2 1.5E-06 5.3E-11 90.1 7.8 87 385-471 24-114 (347)
168 1d2n_A N-ethylmaleimide-sensit 98.2 7.2E-05 2.5E-09 74.4 18.3 196 154-380 33-263 (272)
169 1hqc_A RUVB; extended AAA-ATPa 98.2 3.3E-05 1.1E-09 79.1 16.2 175 154-362 12-214 (324)
170 3syl_A Protein CBBX; photosynt 98.1 8.7E-06 3E-10 82.8 10.9 152 155-328 32-219 (309)
171 1sxj_A Activator 1 95 kDa subu 98.1 1.7E-05 5.7E-10 86.7 13.6 186 154-358 39-252 (516)
172 1sxj_D Activator 1 41 kDa subu 98.1 9.3E-06 3.2E-10 84.4 11.1 191 154-357 37-233 (353)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.1 1.7E-05 5.7E-10 78.5 12.4 174 154-353 6-215 (262)
174 4fdw_A Leucine rich hypothetic 98.1 1.7E-05 5.9E-10 83.5 12.0 94 394-492 159-255 (401)
175 3uk6_A RUVB-like 2; hexameric 98.0 3.7E-05 1.3E-09 80.3 13.9 192 154-357 44-301 (368)
176 3pvs_A Replication-associated 98.0 7E-05 2.4E-09 79.7 15.6 174 154-358 26-214 (447)
177 1sxj_E Activator 1 40 kDa subu 98.0 2.4E-05 8.4E-10 81.2 11.3 194 154-358 14-236 (354)
178 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00013 4.3E-09 74.4 15.2 172 154-353 12-216 (322)
179 3eie_A Vacuolar protein sortin 97.9 0.00019 6.4E-09 73.3 16.4 168 154-351 18-219 (322)
180 3pfi_A Holliday junction ATP-d 97.9 0.0002 6.7E-09 73.7 16.8 168 154-358 29-226 (338)
181 1l8q_A Chromosomal replication 97.9 8.4E-05 2.9E-09 76.0 13.7 164 164-354 24-203 (324)
182 3d8b_A Fidgetin-like protein 1 97.9 0.00012 4E-09 75.9 14.6 177 154-358 84-294 (357)
183 2p65_A Hypothetical protein PF 97.9 3E-05 1E-09 72.0 8.9 46 154-199 22-67 (187)
184 3u61_B DNA polymerase accessor 97.9 0.00013 4.3E-09 74.7 14.2 168 154-357 26-214 (324)
185 2qp9_X Vacuolar protein sortin 97.9 0.00016 5.5E-09 74.7 14.3 169 154-351 51-252 (355)
186 3b9p_A CG5977-PA, isoform A; A 97.9 0.00063 2.1E-08 68.5 18.5 170 154-353 21-226 (297)
187 3cf0_A Transitional endoplasmi 97.8 0.00041 1.4E-08 69.9 16.6 173 154-354 15-223 (301)
188 3vfd_A Spastin; ATPase, microt 97.8 0.00031 1.1E-08 73.7 16.2 171 154-353 115-319 (389)
189 1sxj_C Activator 1 40 kDa subu 97.8 0.00014 4.8E-09 74.9 13.2 171 155-354 26-207 (340)
190 3un9_A NLR family member X1; l 97.8 1.4E-05 4.7E-10 83.3 5.2 135 391-535 100-253 (372)
191 3rw6_A Nuclear RNA export fact 97.8 1E-05 3.5E-10 79.3 3.7 81 412-493 166-259 (267)
192 2zan_A Vacuolar protein sortin 97.8 0.0006 2E-08 72.7 17.6 173 154-352 134-337 (444)
193 2ra8_A Uncharacterized protein 97.8 6.8E-05 2.3E-09 77.5 9.9 100 391-493 106-227 (362)
194 1a5t_A Delta prime, HOLB; zinc 97.7 0.00055 1.9E-08 70.1 16.1 167 160-357 8-203 (334)
195 4b4t_J 26S protease regulatory 97.7 0.00029 9.8E-09 72.6 12.6 196 154-378 148-389 (405)
196 1io0_A Tropomodulin; LRR prote 97.7 4.7E-05 1.6E-09 70.7 5.9 77 391-467 35-128 (185)
197 3e4g_A ATP synthase subunit S, 97.6 3.6E-05 1.2E-09 69.7 4.5 36 392-427 61-96 (176)
198 4fs7_A Uncharacterized protein 97.6 0.00028 9.5E-09 74.3 11.9 102 388-493 67-193 (394)
199 3pxg_A Negative regulator of g 97.6 0.0004 1.4E-08 74.6 12.7 149 155-328 181-340 (468)
200 3n70_A Transport activator; si 97.6 0.00013 4.5E-09 64.6 7.5 45 155-199 2-48 (145)
201 4b4t_H 26S protease regulatory 97.6 0.00047 1.6E-08 72.0 12.5 172 154-352 209-415 (467)
202 4b4t_L 26S protease subunit RP 97.6 0.00033 1.1E-08 73.4 11.3 170 154-352 181-387 (437)
203 1io0_A Tropomodulin; LRR prote 97.5 6.4E-05 2.2E-09 69.8 5.1 117 409-535 29-165 (185)
204 3e4g_A ATP synthase subunit S, 97.5 6.1E-05 2.1E-09 68.2 4.7 84 416-499 61-153 (176)
205 1qvr_A CLPB protein; coiled co 97.5 0.00023 8E-09 82.7 10.7 153 154-325 170-344 (854)
206 3hu3_A Transitional endoplasmi 97.5 0.00097 3.3E-08 71.6 14.3 170 154-351 204-406 (489)
207 2r62_A Cell division protease 97.5 0.00014 4.9E-09 72.0 7.3 46 154-199 11-68 (268)
208 4b4t_I 26S protease regulatory 97.5 0.0009 3.1E-08 69.2 13.0 197 154-379 182-424 (437)
209 4b4t_M 26S protease regulatory 97.5 0.0003 1E-08 73.6 9.4 170 154-352 181-387 (434)
210 2gno_A DNA polymerase III, gam 97.4 0.0007 2.4E-08 68.0 11.6 147 158-326 1-152 (305)
211 2ra8_A Uncharacterized protein 97.4 0.00013 4.4E-09 75.4 6.1 104 390-496 137-263 (362)
212 4b4t_K 26S protease regulatory 97.4 0.0012 4.2E-08 68.9 13.3 46 154-199 172-230 (428)
213 1lv7_A FTSH; alpha/beta domain 97.4 0.0026 9E-08 62.3 15.2 197 154-378 12-252 (257)
214 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0012 4.1E-08 75.9 14.5 154 154-326 186-362 (758)
215 3ec2_A DNA replication protein 97.4 8.2E-05 2.8E-09 68.8 3.6 40 160-199 20-62 (180)
216 2ce7_A Cell division protein F 97.3 0.0011 3.7E-08 70.6 11.9 171 154-352 16-221 (476)
217 3pxi_A Negative regulator of g 97.3 0.0014 4.8E-08 75.2 13.8 151 154-327 180-339 (758)
218 2w58_A DNAI, primosome compone 97.3 0.00047 1.6E-08 64.9 7.8 86 162-268 37-126 (202)
219 3co5_A Putative two-component 97.3 0.00012 4.2E-09 64.6 3.1 45 155-199 5-51 (143)
220 3rw6_A Nuclear RNA export fact 97.2 0.00051 1.7E-08 67.2 7.5 78 390-467 168-258 (267)
221 2kjq_A DNAA-related protein; s 97.2 0.00015 5.1E-09 64.4 2.6 26 174-199 35-60 (149)
222 1in4_A RUVB, holliday junction 97.1 0.0063 2.2E-07 62.1 14.8 168 155-357 26-221 (334)
223 4fcw_A Chaperone protein CLPB; 97.1 0.0016 5.4E-08 65.9 10.0 45 155-199 18-71 (311)
224 4fs7_A Uncharacterized protein 97.0 0.0032 1.1E-07 66.1 11.1 63 407-470 153-218 (394)
225 3cf2_A TER ATPase, transitiona 96.9 0.0042 1.4E-07 70.2 11.5 171 155-353 205-408 (806)
226 4gt6_A Cell surface protein; l 96.9 0.0082 2.8E-07 62.9 13.1 15 568-582 260-274 (394)
227 2x8a_A Nuclear valosin-contain 96.8 0.02 6.8E-07 56.4 15.0 149 154-327 10-192 (274)
228 2dhr_A FTSH; AAA+ protein, hex 96.8 0.013 4.5E-07 62.7 13.8 168 154-352 31-236 (499)
229 3pxi_A Negative regulator of g 96.7 0.0025 8.6E-08 73.1 8.1 46 154-199 491-545 (758)
230 1iy2_A ATP-dependent metallopr 96.6 0.046 1.6E-06 54.0 16.0 171 154-352 40-245 (278)
231 1ixz_A ATP-dependent metallopr 96.5 0.015 5.1E-07 56.7 11.5 171 154-352 16-221 (254)
232 3m6a_A ATP-dependent protease 96.5 0.016 5.4E-07 63.3 12.5 45 155-199 82-132 (543)
233 1ypw_A Transitional endoplasmi 96.5 0.019 6.4E-07 65.9 13.5 152 154-330 204-389 (806)
234 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0017 5.9E-08 64.4 4.2 69 175-268 123-193 (331)
235 3hr8_A Protein RECA; alpha and 96.4 0.0099 3.4E-07 60.6 9.5 87 174-268 60-150 (356)
236 2cvh_A DNA repair and recombin 96.4 0.0078 2.7E-07 57.1 8.3 88 174-268 19-116 (220)
237 1n0w_A DNA repair protein RAD5 96.4 0.014 4.7E-07 56.4 10.1 93 174-268 23-130 (243)
238 4h09_A Hypothetical leucine ri 96.2 0.011 3.8E-07 61.5 9.2 26 389-415 66-91 (379)
239 2c9o_A RUVB-like 1; hexameric 96.1 0.0048 1.7E-07 66.0 5.8 46 154-199 37-87 (456)
240 2z43_A DNA repair and recombin 96.1 0.022 7.6E-07 57.7 10.5 93 174-267 106-213 (324)
241 1v5w_A DMC1, meiotic recombina 96.1 0.029 1E-06 57.2 11.3 93 174-267 121-229 (343)
242 3t15_A Ribulose bisphosphate c 96.1 0.0063 2.2E-07 60.8 6.2 26 174-199 35-60 (293)
243 3io5_A Recombination and repai 96.0 0.021 7.1E-07 56.5 9.2 87 176-268 29-122 (333)
244 1u94_A RECA protein, recombina 96.0 0.018 6.3E-07 58.8 9.2 86 174-267 62-151 (356)
245 1xp8_A RECA protein, recombina 96.0 0.022 7.6E-07 58.4 9.6 86 174-267 73-162 (366)
246 2zr9_A Protein RECA, recombina 95.9 0.025 8.7E-07 57.7 9.5 86 174-267 60-149 (349)
247 1ofh_A ATP-dependent HSL prote 95.8 0.0069 2.4E-07 61.0 5.1 46 154-199 15-74 (310)
248 1rz3_A Hypothetical protein rb 95.8 0.01 3.5E-07 55.6 5.5 41 159-199 3-46 (201)
249 2b8t_A Thymidine kinase; deoxy 95.7 0.0039 1.3E-07 59.1 2.4 113 174-296 11-126 (223)
250 2bjv_A PSP operon transcriptio 95.6 0.0092 3.2E-07 58.6 5.0 45 155-199 7-53 (265)
251 3dm5_A SRP54, signal recogniti 95.6 0.06 2E-06 56.3 11.0 26 174-199 99-124 (443)
252 1r6b_X CLPA protein; AAA+, N-t 95.6 0.022 7.7E-07 65.2 8.6 46 154-199 458-512 (758)
253 2i1q_A DNA repair and recombin 95.5 0.038 1.3E-06 55.9 9.0 93 174-267 97-214 (322)
254 1qvr_A CLPB protein; coiled co 95.4 0.037 1.3E-06 64.2 9.9 45 155-199 559-612 (854)
255 1ojl_A Transcriptional regulat 95.4 0.014 4.7E-07 58.6 5.5 45 155-199 3-49 (304)
256 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.054 1.9E-06 51.7 9.3 87 175-267 23-133 (235)
257 3c8u_A Fructokinase; YP_612366 95.3 0.015 5.1E-07 54.8 4.8 38 162-199 7-46 (208)
258 3ice_A Transcription terminati 95.2 0.01 3.5E-07 60.2 3.6 53 165-218 163-216 (422)
259 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.029 1E-06 60.1 7.3 44 154-199 22-65 (500)
260 2px0_A Flagellar biosynthesis 95.2 0.059 2E-06 53.6 9.1 86 174-265 104-190 (296)
261 3cf2_A TER ATPase, transitiona 95.1 0.058 2E-06 61.0 9.6 92 154-268 477-581 (806)
262 1pzn_A RAD51, DNA repair and r 95.0 0.062 2.1E-06 54.9 8.8 93 174-268 130-242 (349)
263 3kb2_A SPBC2 prophage-derived 95.0 0.014 4.7E-07 52.9 3.5 24 176-199 2-25 (173)
264 1qhx_A CPT, protein (chloramph 95.0 0.014 4.8E-07 53.2 3.6 24 176-199 4-27 (178)
265 3lda_A DNA repair protein RAD5 95.0 0.12 4.2E-06 53.5 11.0 93 174-267 177-283 (400)
266 1g5t_A COB(I)alamin adenosyltr 94.9 0.012 4.3E-07 53.9 3.0 117 175-296 28-163 (196)
267 3lw7_A Adenylate kinase relate 94.9 0.014 4.9E-07 53.0 3.5 23 176-199 2-24 (179)
268 2ck3_D ATP synthase subunit be 94.8 0.23 8E-06 51.9 12.5 64 165-230 142-207 (482)
269 3vaa_A Shikimate kinase, SK; s 94.8 0.018 6.1E-07 53.7 3.8 26 174-199 24-49 (199)
270 2r44_A Uncharacterized protein 94.7 0.019 6.6E-07 58.4 4.3 44 154-199 27-70 (331)
271 1vma_A Cell division protein F 94.7 0.097 3.3E-06 52.2 9.1 90 174-267 103-196 (306)
272 1jr3_D DNA polymerase III, del 94.7 0.26 8.8E-06 50.2 12.7 163 166-357 9-183 (343)
273 1kgd_A CASK, peripheral plasma 94.6 0.02 6.7E-07 52.5 3.6 24 176-199 6-29 (180)
274 3hws_A ATP-dependent CLP prote 94.6 0.029 9.8E-07 58.0 5.2 45 155-199 16-75 (363)
275 3bh0_A DNAB-like replicative h 94.6 0.19 6.5E-06 50.5 11.1 52 174-230 67-118 (315)
276 1zp6_A Hypothetical protein AT 94.6 0.018 6.3E-07 53.1 3.4 26 174-199 8-33 (191)
277 3e70_C DPA, signal recognition 94.6 0.19 6.4E-06 50.6 11.0 27 173-199 127-153 (328)
278 1kag_A SKI, shikimate kinase I 94.6 0.017 5.8E-07 52.4 3.1 24 176-199 5-28 (173)
279 2hf9_A Probable hydrogenase ni 94.6 0.035 1.2E-06 52.8 5.4 38 162-199 25-62 (226)
280 1ly1_A Polynucleotide kinase; 94.6 0.022 7.4E-07 52.0 3.8 22 176-197 3-24 (181)
281 2ga8_A Hypothetical 39.9 kDa p 94.6 0.037 1.3E-06 55.8 5.7 43 157-199 2-48 (359)
282 3trf_A Shikimate kinase, SK; a 94.5 0.021 7.1E-07 52.5 3.6 25 175-199 5-29 (185)
283 3uie_A Adenylyl-sulfate kinase 94.5 0.026 9E-07 52.6 4.3 28 172-199 22-49 (200)
284 2xxa_A Signal recognition part 94.5 0.22 7.5E-06 52.3 11.6 26 174-199 99-124 (433)
285 2q6t_A DNAB replication FORK h 94.5 0.77 2.6E-05 48.5 16.1 53 174-230 199-251 (444)
286 3kl4_A SRP54, signal recogniti 94.5 0.17 5.9E-06 52.8 10.6 26 174-199 96-121 (433)
287 1odf_A YGR205W, hypothetical 3 94.4 0.038 1.3E-06 54.7 5.4 56 173-228 29-84 (290)
288 1um8_A ATP-dependent CLP prote 94.4 0.037 1.3E-06 57.4 5.5 45 155-199 22-96 (376)
289 1nks_A Adenylate kinase; therm 94.4 0.024 8.2E-07 52.4 3.6 24 176-199 2-25 (194)
290 4a1f_A DNAB helicase, replicat 94.4 0.35 1.2E-05 48.7 12.3 52 174-230 45-96 (338)
291 4eun_A Thermoresistant glucoki 94.4 0.026 8.8E-07 52.7 3.8 27 173-199 27-53 (200)
292 4gt6_A Cell surface protein; l 94.3 0.12 4.1E-06 53.9 9.4 86 405-493 254-342 (394)
293 3t61_A Gluconokinase; PSI-biol 94.3 0.02 7E-07 53.5 3.0 25 175-199 18-42 (202)
294 2wsm_A Hydrogenase expression/ 94.3 0.035 1.2E-06 52.6 4.7 42 158-199 13-54 (221)
295 1g8p_A Magnesium-chelatase 38 94.3 0.021 7.1E-07 58.7 3.3 46 154-199 24-69 (350)
296 1sky_E F1-ATPase, F1-ATP synth 94.3 0.1 3.6E-06 54.7 8.5 60 167-228 142-203 (473)
297 2yvu_A Probable adenylyl-sulfa 94.2 0.03 1E-06 51.5 3.9 26 174-199 12-37 (186)
298 2ffh_A Protein (FFH); SRP54, s 94.2 0.17 5.8E-06 52.8 9.9 89 174-266 97-189 (425)
299 2rhm_A Putative kinase; P-loop 94.2 0.03 1E-06 51.7 3.9 25 175-199 5-29 (193)
300 1kht_A Adenylate kinase; phosp 94.2 0.027 9.1E-07 52.0 3.5 24 176-199 4-27 (192)
301 1knq_A Gluconate kinase; ALFA/ 94.2 0.031 1E-06 50.8 3.8 25 175-199 8-32 (175)
302 3iij_A Coilin-interacting nucl 94.2 0.025 8.6E-07 51.7 3.2 25 175-199 11-35 (180)
303 2jaq_A Deoxyguanosine kinase; 94.1 0.029 9.8E-07 52.4 3.5 23 177-199 2-24 (205)
304 3tr0_A Guanylate kinase, GMP k 94.1 0.029 9.9E-07 52.5 3.5 25 175-199 7-31 (205)
305 3fwy_A Light-independent proto 94.0 0.031 1.1E-06 56.1 3.8 27 173-199 46-72 (314)
306 2qor_A Guanylate kinase; phosp 94.0 0.028 9.6E-07 52.6 3.3 26 174-199 11-36 (204)
307 1zuh_A Shikimate kinase; alpha 94.0 0.031 1.1E-06 50.3 3.5 26 174-199 6-31 (168)
308 1via_A Shikimate kinase; struc 94.0 0.026 8.8E-07 51.3 3.0 24 176-199 5-28 (175)
309 3tau_A Guanylate kinase, GMP k 94.0 0.034 1.2E-06 52.2 3.9 26 174-199 7-32 (208)
310 2ze6_A Isopentenyl transferase 94.0 0.031 1.1E-06 54.3 3.7 24 176-199 2-25 (253)
311 1tev_A UMP-CMP kinase; ploop, 94.0 0.034 1.2E-06 51.4 3.8 25 175-199 3-27 (196)
312 2bdt_A BH3686; alpha-beta prot 94.0 0.034 1.2E-06 51.3 3.7 23 176-198 3-25 (189)
313 3a00_A Guanylate kinase, GMP k 94.0 0.028 9.4E-07 51.8 3.1 24 176-199 2-25 (186)
314 1ye8_A Protein THEP1, hypothet 94.0 0.033 1.1E-06 50.8 3.5 23 177-199 2-24 (178)
315 1ukz_A Uridylate kinase; trans 93.9 0.039 1.3E-06 51.5 4.2 26 174-199 14-39 (203)
316 2c95_A Adenylate kinase 1; tra 93.9 0.034 1.2E-06 51.5 3.7 26 174-199 8-33 (196)
317 3umf_A Adenylate kinase; rossm 93.9 0.038 1.3E-06 51.9 3.9 27 173-199 27-53 (217)
318 3asz_A Uridine kinase; cytidin 93.8 0.038 1.3E-06 52.0 3.9 26 174-199 5-30 (211)
319 1cke_A CK, MSSA, protein (cyti 93.8 0.034 1.2E-06 53.0 3.5 24 176-199 6-29 (227)
320 1fx0_B ATP synthase beta chain 93.8 0.23 7.7E-06 52.3 9.9 63 166-230 155-219 (498)
321 1y63_A LMAJ004144AAA protein; 93.8 0.039 1.3E-06 50.6 3.8 24 175-198 10-33 (184)
322 2dr3_A UPF0273 protein PH0284; 93.8 0.17 6E-06 48.5 8.7 48 174-226 22-69 (247)
323 3rfe_A Platelet glycoprotein I 93.8 0.059 2E-06 46.1 4.6 56 440-498 11-68 (130)
324 1uj2_A Uridine-cytidine kinase 93.8 0.041 1.4E-06 53.5 4.1 27 173-199 20-46 (252)
325 2j41_A Guanylate kinase; GMP, 93.8 0.036 1.2E-06 51.9 3.5 25 175-199 6-30 (207)
326 2iyv_A Shikimate kinase, SK; t 93.8 0.028 9.7E-07 51.5 2.7 24 176-199 3-26 (184)
327 3cm0_A Adenylate kinase; ATP-b 93.7 0.04 1.4E-06 50.6 3.7 24 176-199 5-28 (186)
328 1ex7_A Guanylate kinase; subst 93.7 0.028 9.6E-07 51.4 2.6 24 176-199 2-25 (186)
329 3tqc_A Pantothenate kinase; bi 93.7 0.061 2.1E-06 53.9 5.3 79 174-257 91-171 (321)
330 2if2_A Dephospho-COA kinase; a 93.7 0.036 1.2E-06 51.8 3.4 22 176-197 2-23 (204)
331 2bwj_A Adenylate kinase 5; pho 93.7 0.038 1.3E-06 51.3 3.5 25 175-199 12-36 (199)
332 1uf9_A TT1252 protein; P-loop, 93.7 0.045 1.5E-06 51.0 4.0 26 173-198 6-31 (203)
333 2bbw_A Adenylate kinase 4, AK4 93.7 0.04 1.4E-06 53.3 3.8 26 174-199 26-51 (246)
334 2qt1_A Nicotinamide riboside k 93.6 0.043 1.5E-06 51.4 3.8 26 174-199 20-45 (207)
335 2plr_A DTMP kinase, probable t 93.6 0.044 1.5E-06 51.5 4.0 24 176-199 5-28 (213)
336 1xjc_A MOBB protein homolog; s 93.6 0.044 1.5E-06 49.2 3.6 26 174-199 3-28 (169)
337 3cmu_A Protein RECA, recombina 93.6 0.14 4.9E-06 63.2 9.2 86 174-267 1426-1515(2050)
338 1e6c_A Shikimate kinase; phosp 93.6 0.034 1.1E-06 50.3 3.0 24 176-199 3-26 (173)
339 1cr0_A DNA primase/helicase; R 93.6 0.26 8.8E-06 49.0 9.8 53 174-230 34-86 (296)
340 1g41_A Heat shock protein HSLU 93.6 0.051 1.8E-06 56.9 4.6 46 154-199 15-74 (444)
341 1lvg_A Guanylate kinase, GMP k 93.6 0.034 1.1E-06 51.8 2.9 24 176-199 5-28 (198)
342 1gvn_B Zeta; postsegregational 93.6 0.067 2.3E-06 53.0 5.2 26 174-199 32-57 (287)
343 1jjv_A Dephospho-COA kinase; P 93.5 0.042 1.4E-06 51.4 3.5 22 176-197 3-24 (206)
344 4gp7_A Metallophosphoesterase; 93.5 0.04 1.4E-06 49.9 3.2 23 174-196 8-30 (171)
345 3ney_A 55 kDa erythrocyte memb 93.5 0.049 1.7E-06 50.3 3.8 26 174-199 18-43 (197)
346 1qf9_A UMP/CMP kinase, protein 93.5 0.045 1.5E-06 50.5 3.6 25 175-199 6-30 (194)
347 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.049 1.7E-06 53.1 4.0 25 175-199 4-28 (260)
348 2pt5_A Shikimate kinase, SK; a 93.4 0.046 1.6E-06 49.2 3.5 23 177-199 2-24 (168)
349 2vli_A Antibiotic resistance p 93.4 0.032 1.1E-06 51.0 2.5 25 175-199 5-29 (183)
350 2j37_W Signal recognition part 93.4 0.48 1.6E-05 50.6 11.8 26 174-199 100-125 (504)
351 2pbr_A DTMP kinase, thymidylat 93.4 0.046 1.6E-06 50.5 3.6 23 177-199 2-24 (195)
352 2cdn_A Adenylate kinase; phosp 93.4 0.045 1.6E-06 51.0 3.5 25 175-199 20-44 (201)
353 2grj_A Dephospho-COA kinase; T 93.4 0.052 1.8E-06 50.1 3.8 26 174-199 11-36 (192)
354 3tlx_A Adenylate kinase 2; str 93.4 0.083 2.8E-06 50.9 5.4 27 173-199 27-53 (243)
355 4a74_A DNA repair and recombin 93.4 0.15 5.2E-06 48.4 7.3 58 174-232 24-84 (231)
356 1j8m_F SRP54, signal recogniti 93.4 0.23 8E-06 49.2 8.8 89 175-266 98-189 (297)
357 3aez_A Pantothenate kinase; tr 93.3 0.054 1.8E-06 54.3 4.1 43 173-216 88-130 (312)
358 1znw_A Guanylate kinase, GMP k 93.3 0.048 1.7E-06 51.1 3.5 26 174-199 19-44 (207)
359 4h09_A Hypothetical leucine ri 93.3 0.14 4.7E-06 53.1 7.4 101 390-493 215-318 (379)
360 1htw_A HI0065; nucleotide-bind 93.2 0.057 2E-06 48.0 3.7 27 173-199 31-57 (158)
361 2p5t_B PEZT; postsegregational 93.2 0.067 2.3E-06 51.9 4.5 26 174-199 31-56 (253)
362 4e22_A Cytidylate kinase; P-lo 93.2 0.051 1.8E-06 52.7 3.6 26 174-199 26-51 (252)
363 2wwf_A Thymidilate kinase, put 93.2 0.055 1.9E-06 50.8 3.7 25 175-199 10-34 (212)
364 1zd8_A GTP:AMP phosphotransfer 93.1 0.053 1.8E-06 51.7 3.6 25 175-199 7-31 (227)
365 1nn5_A Similar to deoxythymidy 93.1 0.056 1.9E-06 50.9 3.7 25 175-199 9-33 (215)
366 2jeo_A Uridine-cytidine kinase 93.1 0.063 2.2E-06 51.8 4.1 27 173-199 23-49 (245)
367 1aky_A Adenylate kinase; ATP:A 93.1 0.058 2E-06 51.1 3.8 25 175-199 4-28 (220)
368 1tue_A Replication protein E1; 93.1 0.084 2.9E-06 48.6 4.6 37 163-199 45-82 (212)
369 1z6g_A Guanylate kinase; struc 93.0 0.046 1.6E-06 51.7 3.0 26 174-199 22-47 (218)
370 1gtv_A TMK, thymidylate kinase 93.0 0.031 1.1E-06 52.6 1.7 24 176-199 1-24 (214)
371 3fb4_A Adenylate kinase; psych 93.0 0.057 1.9E-06 50.9 3.6 23 177-199 2-24 (216)
372 2z0h_A DTMP kinase, thymidylat 93.0 0.058 2E-06 49.9 3.6 23 177-199 2-24 (197)
373 3dl0_A Adenylate kinase; phosp 92.9 0.06 2.1E-06 50.8 3.6 23 177-199 2-24 (216)
374 3l0o_A Transcription terminati 92.9 0.15 5E-06 51.8 6.5 52 165-217 164-216 (427)
375 1ls1_A Signal recognition part 92.9 0.34 1.2E-05 48.0 9.2 90 174-266 97-189 (295)
376 2v54_A DTMP kinase, thymidylat 92.9 0.061 2.1E-06 50.1 3.5 25 175-199 4-28 (204)
377 1zak_A Adenylate kinase; ATP:A 92.8 0.056 1.9E-06 51.3 3.3 25 175-199 5-29 (222)
378 1s96_A Guanylate kinase, GMP k 92.7 0.067 2.3E-06 50.5 3.5 26 174-199 15-40 (219)
379 2f1r_A Molybdopterin-guanine d 92.7 0.043 1.5E-06 49.5 2.1 24 176-199 3-26 (171)
380 1m7g_A Adenylylsulfate kinase; 92.6 0.072 2.5E-06 50.0 3.7 27 173-199 23-49 (211)
381 2pez_A Bifunctional 3'-phospho 92.6 0.076 2.6E-06 48.3 3.7 25 175-199 5-29 (179)
382 1rj9_A FTSY, signal recognitio 92.6 0.073 2.5E-06 53.1 3.8 26 174-199 101-126 (304)
383 2qgz_A Helicase loader, putati 92.5 0.11 3.7E-06 52.0 5.0 38 162-199 136-176 (308)
384 2i3b_A HCR-ntpase, human cance 92.4 0.065 2.2E-06 49.3 3.0 24 176-199 2-25 (189)
385 3sr0_A Adenylate kinase; phosp 92.4 0.08 2.7E-06 49.4 3.6 23 177-199 2-24 (206)
386 1vht_A Dephospho-COA kinase; s 92.3 0.093 3.2E-06 49.5 4.1 23 175-197 4-26 (218)
387 3nwj_A ATSK2; P loop, shikimat 92.3 0.065 2.2E-06 51.7 3.0 25 175-199 48-72 (250)
388 1np6_A Molybdopterin-guanine d 92.3 0.09 3.1E-06 47.5 3.7 25 175-199 6-30 (174)
389 3r20_A Cytidylate kinase; stru 92.3 0.081 2.8E-06 50.3 3.5 25 175-199 9-33 (233)
390 3ake_A Cytidylate kinase; CMP 92.3 0.081 2.8E-06 49.4 3.6 23 177-199 4-26 (208)
391 3hjn_A DTMP kinase, thymidylat 92.3 0.25 8.6E-06 45.7 6.8 50 177-229 2-51 (197)
392 2onk_A Molybdate/tungstate ABC 92.2 0.081 2.8E-06 50.7 3.5 26 173-199 23-48 (240)
393 2f6r_A COA synthase, bifunctio 92.2 0.086 2.9E-06 52.1 3.8 24 174-197 74-97 (281)
394 3d3q_A TRNA delta(2)-isopenten 92.2 0.087 3E-06 53.0 3.8 24 176-199 8-31 (340)
395 3k1j_A LON protease, ATP-depen 92.1 0.11 3.7E-06 57.6 4.9 43 155-199 42-84 (604)
396 3be4_A Adenylate kinase; malar 92.1 0.085 2.9E-06 49.8 3.4 24 176-199 6-29 (217)
397 1sq5_A Pantothenate kinase; P- 92.1 0.096 3.3E-06 52.5 4.0 27 173-199 78-104 (308)
398 2xb4_A Adenylate kinase; ATP-b 92.0 0.089 3.1E-06 49.9 3.5 23 177-199 2-24 (223)
399 2ehv_A Hypothetical protein PH 92.0 0.083 2.8E-06 51.0 3.4 24 174-197 29-52 (251)
400 1e4v_A Adenylate kinase; trans 92.0 0.089 3E-06 49.5 3.5 23 177-199 2-24 (214)
401 2yhs_A FTSY, cell division pro 92.0 0.15 5.2E-06 53.8 5.5 26 174-199 292-317 (503)
402 1ak2_A Adenylate kinase isoenz 91.9 0.1 3.5E-06 49.8 3.9 25 175-199 16-40 (233)
403 3b9q_A Chloroplast SRP recepto 91.9 0.1 3.5E-06 52.0 4.0 26 174-199 99-124 (302)
404 3lnc_A Guanylate kinase, GMP k 91.8 0.06 2.1E-06 51.4 2.1 25 175-199 27-52 (231)
405 3tif_A Uncharacterized ABC tra 91.8 0.087 3E-06 50.4 3.2 26 174-199 30-55 (235)
406 3p32_A Probable GTPase RV1496/ 91.8 0.18 6.2E-06 51.6 5.9 37 163-199 65-103 (355)
407 2pcj_A ABC transporter, lipopr 91.8 0.078 2.7E-06 50.3 2.8 26 174-199 29-54 (224)
408 3vr4_D V-type sodium ATPase su 91.7 0.18 6E-06 52.5 5.5 99 166-268 141-259 (465)
409 3crm_A TRNA delta(2)-isopenten 91.6 0.11 3.8E-06 51.8 3.8 24 176-199 6-29 (323)
410 4eaq_A DTMP kinase, thymidylat 91.5 0.19 6.6E-06 47.7 5.3 26 174-199 25-50 (229)
411 3b85_A Phosphate starvation-in 91.5 0.076 2.6E-06 49.7 2.3 24 175-198 22-45 (208)
412 3end_A Light-independent proto 91.5 0.16 5.6E-06 50.8 5.0 41 173-216 39-79 (307)
413 2cbz_A Multidrug resistance-as 91.4 0.092 3.1E-06 50.3 2.9 26 174-199 30-55 (237)
414 1oix_A RAS-related protein RAB 91.3 0.12 4E-06 47.7 3.4 25 175-199 29-53 (191)
415 1q57_A DNA primase/helicase; d 91.3 0.74 2.5E-05 49.6 10.3 53 174-230 241-293 (503)
416 3gfo_A Cobalt import ATP-bindi 91.3 0.094 3.2E-06 51.4 2.9 26 174-199 33-58 (275)
417 2d2e_A SUFC protein; ABC-ATPas 91.3 0.11 3.8E-06 50.2 3.4 25 174-198 28-52 (250)
418 1b0u_A Histidine permease; ABC 91.3 0.094 3.2E-06 51.1 2.9 26 174-199 31-56 (262)
419 3exa_A TRNA delta(2)-isopenten 91.2 0.13 4.4E-06 50.9 3.7 25 175-199 3-27 (322)
420 3cmu_A Protein RECA, recombina 91.2 0.49 1.7E-05 58.6 9.4 87 174-268 382-472 (2050)
421 3cmw_A Protein RECA, recombina 91.2 0.4 1.4E-05 58.5 8.6 84 175-266 1431-1518(1706)
422 2og2_A Putative signal recogni 91.1 0.14 4.7E-06 52.2 4.0 26 174-199 156-181 (359)
423 2zu0_C Probable ATP-dependent 91.1 0.12 4E-06 50.6 3.4 25 174-198 45-69 (267)
424 1ji0_A ABC transporter; ATP bi 91.1 0.1 3.5E-06 50.1 2.9 26 174-199 31-56 (240)
425 3a8t_A Adenylate isopentenyltr 91.1 0.13 4.3E-06 51.7 3.5 25 175-199 40-64 (339)
426 1pgv_A TMD-1, tropomodulin TMD 91.0 0.24 8.1E-06 45.5 5.1 59 392-450 41-111 (197)
427 1g6h_A High-affinity branched- 91.0 0.1 3.6E-06 50.6 2.9 26 174-199 32-57 (257)
428 4g1u_C Hemin import ATP-bindin 91.0 0.1 3.5E-06 50.9 2.9 26 174-199 36-61 (266)
429 2olj_A Amino acid ABC transpor 91.0 0.1 3.6E-06 50.7 2.9 26 174-199 49-74 (263)
430 1sgw_A Putative ABC transporte 91.0 0.089 3E-06 49.4 2.3 26 174-199 34-59 (214)
431 2pze_A Cystic fibrosis transme 91.0 0.11 3.7E-06 49.6 2.9 26 174-199 33-58 (229)
432 1mv5_A LMRA, multidrug resista 91.0 0.11 3.9E-06 49.9 3.0 26 174-199 27-52 (243)
433 2ff7_A Alpha-hemolysin translo 90.9 0.11 3.7E-06 50.1 2.9 26 174-199 34-59 (247)
434 2dyk_A GTP-binding protein; GT 90.9 0.15 5.2E-06 45.0 3.7 24 176-199 2-25 (161)
435 1vpl_A ABC transporter, ATP-bi 90.8 0.11 3.8E-06 50.3 2.9 26 174-199 40-65 (256)
436 3cmw_A Protein RECA, recombina 90.8 0.48 1.7E-05 57.9 8.8 87 174-268 382-472 (1706)
437 2f9l_A RAB11B, member RAS onco 90.8 0.13 4.6E-06 47.5 3.3 24 176-199 6-29 (199)
438 1zu4_A FTSY; GTPase, signal re 90.8 0.16 5.5E-06 51.0 4.1 26 174-199 104-129 (320)
439 1yrb_A ATP(GTP)binding protein 90.7 0.16 5.5E-06 49.4 4.0 26 174-199 13-38 (262)
440 2eyu_A Twitching motility prot 90.7 0.15 5.1E-06 49.6 3.7 110 173-298 23-135 (261)
441 3oaa_A ATP synthase subunit al 90.7 1.3 4.4E-05 46.6 10.8 97 166-268 152-265 (513)
442 3foz_A TRNA delta(2)-isopenten 90.6 0.17 5.7E-06 50.0 3.9 26 174-199 9-34 (316)
443 2v9p_A Replication protein E1; 90.6 0.15 5E-06 50.7 3.5 27 173-199 124-150 (305)
444 1ltq_A Polynucleotide kinase; 90.6 0.15 5.1E-06 50.9 3.7 24 176-199 3-26 (301)
445 2ghi_A Transport protein; mult 90.6 0.12 4.1E-06 50.2 2.9 26 174-199 45-70 (260)
446 2wji_A Ferrous iron transport 90.6 0.14 4.8E-06 45.7 3.1 23 176-198 4-26 (165)
447 2ixe_A Antigen peptide transpo 90.6 0.12 4.1E-06 50.6 2.9 26 174-199 44-69 (271)
448 2qi9_C Vitamin B12 import ATP- 90.5 0.12 4.2E-06 49.7 2.9 26 174-199 25-50 (249)
449 2qe7_A ATP synthase subunit al 90.5 0.68 2.3E-05 48.7 8.6 98 166-268 152-265 (502)
450 1a7j_A Phosphoribulokinase; tr 90.5 0.078 2.7E-06 52.6 1.4 26 174-199 4-29 (290)
451 3lv8_A DTMP kinase, thymidylat 90.5 0.31 1.1E-05 46.4 5.5 37 175-213 27-63 (236)
452 1q3t_A Cytidylate kinase; nucl 90.4 0.18 6.1E-06 48.3 3.9 26 174-199 15-40 (236)
453 4tmk_A Protein (thymidylate ki 90.4 0.34 1.1E-05 45.4 5.7 52 176-229 4-55 (213)
454 2ihy_A ABC transporter, ATP-bi 90.4 0.13 4.3E-06 50.6 2.9 26 174-199 46-71 (279)
455 2ocp_A DGK, deoxyguanosine kin 90.4 0.18 6.2E-06 48.4 4.0 25 175-199 2-26 (241)
456 3bgw_A DNAB-like replicative h 90.4 0.62 2.1E-05 49.1 8.4 51 174-229 196-246 (444)
457 2yz2_A Putative ABC transporte 90.4 0.13 4.4E-06 50.2 2.9 26 174-199 32-57 (266)
458 2nq2_C Hypothetical ABC transp 90.4 0.13 4.4E-06 49.8 2.9 26 174-199 30-55 (253)
459 3sop_A Neuronal-specific septi 90.3 0.16 5.3E-06 49.7 3.4 23 177-199 4-26 (270)
460 2zej_A Dardarin, leucine-rich 90.3 0.12 4E-06 47.2 2.4 22 177-198 4-25 (184)
461 3f9v_A Minichromosome maintena 90.2 0.09 3.1E-06 57.9 1.8 46 154-199 295-351 (595)
462 4edh_A DTMP kinase, thymidylat 90.2 0.43 1.5E-05 44.7 6.2 32 175-208 6-37 (213)
463 2r6a_A DNAB helicase, replicat 90.2 1.7 5.9E-05 46.0 11.7 51 174-228 202-252 (454)
464 2r9v_A ATP synthase subunit al 90.1 0.47 1.6E-05 50.0 7.0 98 166-268 165-278 (515)
465 3iqw_A Tail-anchored protein t 90.1 0.41 1.4E-05 48.3 6.4 49 170-221 11-59 (334)
466 3gqb_B V-type ATP synthase bet 90.1 0.29 1E-05 50.9 5.3 101 166-268 137-262 (464)
467 3zvl_A Bifunctional polynucleo 90.1 0.16 5.5E-06 53.3 3.5 27 173-199 256-282 (416)
468 3io3_A DEHA2D07832P; chaperone 90.0 0.33 1.1E-05 49.3 5.7 49 170-219 13-61 (348)
469 2ce2_X GTPase HRAS; signaling 90.0 0.16 5.6E-06 44.9 3.1 23 177-199 5-27 (166)
470 1g8f_A Sulfate adenylyltransfe 90.0 0.27 9.3E-06 52.5 5.2 44 156-199 374-419 (511)
471 3upu_A ATP-dependent DNA helic 89.9 0.28 9.7E-06 52.2 5.4 36 163-199 34-69 (459)
472 1z2a_A RAS-related protein RAB 89.8 0.18 6.1E-06 44.9 3.2 24 176-199 6-29 (168)
473 1nlf_A Regulatory protein REPA 89.8 0.17 5.7E-06 49.9 3.2 26 174-199 29-54 (279)
474 1svm_A Large T antigen; AAA+ f 89.7 0.21 7E-06 51.3 3.9 27 173-199 167-193 (377)
475 2vp4_A Deoxynucleoside kinase; 89.7 0.15 5E-06 48.7 2.6 25 174-198 19-43 (230)
476 2wjg_A FEOB, ferrous iron tran 89.7 0.19 6.6E-06 45.8 3.3 23 176-198 8-30 (188)
477 1tq4_A IIGP1, interferon-induc 89.7 0.25 8.6E-06 51.3 4.5 27 173-199 67-93 (413)
478 2qmh_A HPR kinase/phosphorylas 89.6 0.18 6.2E-06 46.1 3.0 25 175-199 34-58 (205)
479 4gzl_A RAS-related C3 botulinu 89.6 0.21 7.2E-06 46.4 3.6 36 164-199 19-54 (204)
480 1p9r_A General secretion pathw 89.6 0.36 1.2E-05 50.4 5.7 29 171-199 163-191 (418)
481 1cp2_A CP2, nitrogenase iron p 89.6 0.34 1.2E-05 47.2 5.3 37 176-215 2-38 (269)
482 2pjz_A Hypothetical protein ST 89.6 0.16 5.6E-06 49.3 2.9 24 175-198 30-53 (263)
483 3con_A GTPase NRAS; structural 89.5 0.19 6.5E-06 46.0 3.2 24 176-199 22-45 (190)
484 1u8z_A RAS-related protein RAL 89.3 0.21 7.1E-06 44.3 3.2 24 176-199 5-28 (168)
485 1zj6_A ADP-ribosylation factor 89.2 0.39 1.3E-05 43.7 5.1 33 165-198 7-39 (187)
486 3fvq_A Fe(3+) IONS import ATP- 89.2 0.2 7E-06 50.8 3.3 26 174-199 29-54 (359)
487 2ged_A SR-beta, signal recogni 89.2 0.26 8.8E-06 45.2 3.8 26 174-199 47-72 (193)
488 2nzj_A GTP-binding protein REM 89.1 0.18 6.3E-06 45.2 2.7 24 176-199 5-28 (175)
489 3eph_A TRNA isopentenyltransfe 89.1 0.23 7.8E-06 51.0 3.6 24 176-199 3-26 (409)
490 1r8s_A ADP-ribosylation factor 89.1 0.24 8.1E-06 43.9 3.4 23 177-199 2-24 (164)
491 3tui_C Methionine import ATP-b 89.1 0.22 7.4E-06 50.7 3.4 26 174-199 53-78 (366)
492 1fx0_A ATP synthase alpha chai 89.0 0.46 1.6E-05 50.1 5.9 88 174-268 162-266 (507)
493 1c1y_A RAS-related protein RAP 89.0 0.22 7.5E-06 44.2 3.2 23 177-199 5-27 (167)
494 2ck3_A ATP synthase subunit al 89.0 1.1 3.7E-05 47.4 8.6 103 166-268 152-273 (510)
495 3gmt_A Adenylate kinase; ssgci 89.0 0.23 7.9E-06 46.9 3.3 24 176-199 9-32 (230)
496 3jvv_A Twitching mobility prot 89.0 0.34 1.2E-05 49.4 4.8 115 172-299 120-234 (356)
497 1z08_A RAS-related protein RAB 89.0 0.22 7.6E-06 44.4 3.1 24 176-199 7-30 (170)
498 1m7b_A RND3/RHOE small GTP-bin 88.9 0.22 7.4E-06 45.3 3.1 24 176-199 8-31 (184)
499 3ihw_A Centg3; RAS, centaurin, 88.9 0.22 7.7E-06 45.4 3.2 24 176-199 21-44 (184)
500 2gj8_A MNME, tRNA modification 88.9 0.21 7.1E-06 45.0 2.9 24 176-199 5-28 (172)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=2e-30 Score=287.82 Aligned_cols=199 Identities=16% Similarity=0.158 Sum_probs=167.4
Q ss_pred ccchhhHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHH--hccCCCCCCcEEEEEEeCCcC--CHHHHHHHHHH
Q 048789 157 VGLQSTFDGVWKCLMEE---QMGIVGLYGMGGVGKTTLLTQINN--KFLDTPNSFDFVIWIVVSKDL--QLAKIQEGIAK 229 (724)
Q Consensus 157 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~ 229 (724)
|||+.++++|.++|..+ ..++|+|+||||+||||||+.+|+ +. +++.+|+.++||++++.+ ++..++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 69999999999999754 689999999999999999999998 34 568999999999999885 89999999999
Q ss_pred HcCCCcc-----ccCCcCHHHHHHHHHHHHccC-ceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhhcc
Q 048789 230 KMGLFNE-----SWQSKGLEEKANKIFKILSKK-KFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQME 303 (724)
Q Consensus 230 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~~~ 303 (724)
+++.... .....+..++...+++.|+++ ||||||||||+..++ .+ +. .+| |+||||||+..++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~-~~g-s~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQ-ELR-LRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HH-HTT-CEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----cc-cCC-CEEEEEcCCHHHHHHcC
Confidence 9986522 112335677889999999996 999999999997754 11 11 156 99999999999998876
Q ss_pred -CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcC
Q 048789 304 -AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASR 365 (724)
Q Consensus 304 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~ 365 (724)
....|++++|+.++||+||.++++... .++++.+++++|+++|+|+|||++++|+.++.+
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 446799999999999999999988654 246788899999999999999999999988764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=6.5e-26 Score=254.19 Aligned_cols=200 Identities=18% Similarity=0.213 Sum_probs=156.4
Q ss_pred ccccchhhHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcE-EEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 155 TVVGLQSTFDGVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDF-VIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
..|||++++++|.++|.. +..++|+|+||||+||||||+.+|++. +++.+|+. ++|+++++.++...++..|+..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 359999999999999976 568999999999999999999999875 45678986 999999999999888888877542
Q ss_pred CCc---cc-c-----CCcCHHHHHHHHHHHH---ccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHh
Q 048789 233 LFN---ES-W-----QSKGLEEKANKIFKIL---SKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCG 300 (724)
Q Consensus 233 ~~~---~~-~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~ 300 (724)
... .. . ...+.+.+...+++.+ .++|+||||||||+...|+.+. .| |+||||||++.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pG-SRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LS-CKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SS-CCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CC-eEEEEeccChHHHH
Confidence 210 00 0 0123445667777766 6799999999999988887652 46 99999999999986
Q ss_pred hccCccceeec------cCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcCC-ChhHHHH
Q 048789 301 QMEAHRSFKVE------CLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASRK-TPREWEH 373 (724)
Q Consensus 301 ~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~-~~~~w~~ 373 (724)
.+.....+.++ +|+.+|||+||++.+... ..++..++ |+|+|||+.++|+.|+.+. ..++|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 55444467777 999999999999985432 12234443 9999999999999999863 6778864
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=5.6e-25 Score=270.73 Aligned_cols=215 Identities=22% Similarity=0.374 Sum_probs=172.7
Q ss_pred CCccccchhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhccCCCC-CCcEEEEEEeCCcCC--HHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPN-SFDFVIWIVVSKDLQ--LAKIQEGI 227 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~~--~~~~~~~i 227 (724)
+..||||++++++|.++|.. ++.++|+|+||||+||||||+++|++...... .|+.++||+++...+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 45699999999999999953 57899999999999999999999988521234 556888999988543 44456777
Q ss_pred HHHcCCCcc--ccCCcCHHHHHHHHHHHHccC--ceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhh-c
Q 048789 228 AKKMGLFNE--SWQSKGLEEKANKIFKILSKK--KFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQ-M 302 (724)
Q Consensus 228 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~-~ 302 (724)
+..+..... .....+.+++.+.++..+.++ |+||||||||+..+|..+ .+| |+||||||++.++.. +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~-~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQ-CQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSS-CEEEEEESSTTTTTTCC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCC-CEEEEEcCCHHHHHhhc
Confidence 777765432 123457788899999999877 999999999998877664 356 999999999999854 4
Q ss_pred cCccceeecc-CChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 048789 303 EAHRSFKVEC-LGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASRKTPREWEHAIEVLRCS 381 (724)
Q Consensus 303 ~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~ 381 (724)
+....+.+.+ |++++|++||...++... +++.+.+++|+++|+|+|||+..+|+.|+.+. ..|+..++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 5667889986 999999999999986433 34556799999999999999999999998854 4688888877654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.90 E-value=3.4e-23 Score=233.48 Aligned_cols=212 Identities=22% Similarity=0.400 Sum_probs=162.4
Q ss_pred CCccccchhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhccCC-CCCC-cEEEEEEeCCcCCHHHHHHHH-
Q 048789 153 PATVVGLQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKFLDT-PNSF-DFVIWIVVSKDLQLAKIQEGI- 227 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f-~~~~wv~v~~~~~~~~~~~~i- 227 (724)
+..+|||+.++++|.++|.. ++.++|+|+|+||+||||||..++++. .. ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 35699999999999999974 568899999999999999999999875 33 4668 58999999876 333444433
Q ss_pred --HHHcCCCc--cccCCcCHHHHHHHHHHHHcc--CceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhh
Q 048789 228 --AKKMGLFN--ESWQSKGLEEKANKIFKILSK--KKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQ 301 (724)
Q Consensus 228 --~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~ 301 (724)
+..++... ......+.+.....++..+.+ +++||||||+|+...+..+ ..+ ++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~-~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQ-CQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSS-CEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCC-CeEEEECCCcHHHHh
Confidence 44554211 112345677888888888877 7899999999987666543 345 999999999998766
Q ss_pred ccCccceee---ccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHHhcCCChhHHHHHHHHH
Q 048789 302 MEAHRSFKV---ECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAMASRKTPREWEHAIEVL 378 (724)
Q Consensus 302 ~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l 378 (724)
+. ...+++ ++|+.++++++|...++... ....+.+.+|+++|+|+|+|+..+|+.++... ..|...++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 43 334444 58999999999999987532 12245689999999999999999999998753 4799888887
Q ss_pred hhc
Q 048789 379 RCS 381 (724)
Q Consensus 379 ~~~ 381 (724)
...
T Consensus 346 ~~~ 348 (591)
T 1z6t_A 346 QNK 348 (591)
T ss_dssp HSC
T ss_pred HHh
Confidence 654
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=5.1e-20 Score=190.84 Aligned_cols=237 Identities=20% Similarity=0.285 Sum_probs=138.1
Q ss_pred CCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccChhhhcCCCcCcEEecc
Q 048789 416 ASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMY 493 (724)
Q Consensus 416 ~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~ 493 (724)
.++++|+++++. .+|..++.+++|++|+|++|.+..+|..++++.+|++|++++|. +..+|.. ++.+++|++|++.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEEECC
Confidence 334444444444 44444444444555555444444444444445555555554442 3344443 4445555555554
Q ss_pred ccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccccccccccc
Q 048789 494 ECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLR 573 (724)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 573 (724)
+|.....+|..+.. ......+..+++|+.|+++.+.+..++ ..+..++
T Consensus 159 ~n~~~~~~p~~~~~---~~~~~~~~~l~~L~~L~L~~n~l~~lp-----------------------------~~l~~l~ 206 (328)
T 4fcg_A 159 ACPELTELPEPLAS---TDASGEHQGLVNLQSLRLEWTGIRSLP-----------------------------ASIANLQ 206 (328)
T ss_dssp EETTCCCCCSCSEE---EC-CCCEEESTTCCEEEEEEECCCCCC-----------------------------GGGGGCT
T ss_pred CCCCccccChhHhh---ccchhhhccCCCCCEEECcCCCcCcch-----------------------------HhhcCCC
Confidence 44433322221110 001112344555666665544432111 1356677
Q ss_pred ccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceecccccc
Q 048789 574 HLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELK 653 (724)
Q Consensus 574 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 653 (724)
+|++|++++|.++++ |..+. .+++|+.|++++|.....+. ...+.+++|++|+|++|.
T Consensus 207 ~L~~L~L~~N~l~~l-~~~l~--------~l~~L~~L~Ls~n~~~~~~p-------------~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 207 NLKSLKIRNSPLSAL-GPAIH--------HLPKLEELDLRGCTALRNYP-------------PIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp TCCEEEEESSCCCCC-CGGGG--------GCTTCCEEECTTCTTCCBCC-------------CCTTCCCCCCEEECTTCT
T ss_pred CCCEEEccCCCCCcC-chhhc--------cCCCCCEEECcCCcchhhhH-------------HHhcCCCCCCEEECCCCC
Confidence 888888888887764 33332 57888888888876544432 245678899999999988
Q ss_pred ccccccCCCCCCCCccEEeecCCCCCCCCCCCCCCCCCcceEEechhhhhhccccc
Q 048789 654 NLKTIHSKALPFPCLKEMSVDGCPLLKKLPLDCNRGLERKIIIKGQRRWWNELQWY 709 (724)
Q Consensus 654 ~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~l~~~~~~~~~~~~l~w~ 709 (724)
.+..++.....+++|+.|.+++|+.+..+|.... .+..+.+...+..+...+.+.
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGSCC----
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHHHHHhhh
Confidence 8888887777889999999999999999997654 477788888887777766554
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=5.5e-20 Score=190.57 Aligned_cols=220 Identities=20% Similarity=0.225 Sum_probs=176.3
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
...++.|++++|.+..+++. +..+++|++|+++++. .+|..++.+++|++|+|++|.+..+|..++++.+|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 47899999999998877655 6679999999999999 89999999999999999999999999999999999999999
Q ss_pred CcccccccChhhhc---------CCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHH
Q 048789 469 YTYGVLKIPPKVIS---------NLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRL 539 (724)
Q Consensus 469 ~~~~~~~lp~~~i~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~ 539 (724)
+|+.+..+|.. +. .+++|++|++.+|... .....+..+++|+.|+++.+.+..++
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~-------------~lp~~l~~l~~L~~L~L~~N~l~~l~-- 222 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR-------------SLPASIANLQNLKSLKIRNSPLSALG-- 222 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC-------------CCCGGGGGCTTCCEEEEESSCCCCCC--
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC-------------cchHhhcCCCCCCEEEccCCCCCcCc--
Confidence 98888888876 54 4999999999987532 23345777888888888766544221
Q ss_pred hccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchh
Q 048789 540 LDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDME 619 (724)
Q Consensus 540 ~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~ 619 (724)
..+..+++|++|++++|.+.+..|.++. .+++|+.|+|++|..+.
T Consensus 223 ---------------------------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--------~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 223 ---------------------------PAIHHLPKLEELDLRGCTALRNYPPIFG--------GRAPLKRLILKDCSNLL 267 (328)
T ss_dssp ---------------------------GGGGGCTTCCEEECTTCTTCCBCCCCTT--------CCCCCCEEECTTCTTCC
T ss_pred ---------------------------hhhccCCCCCEEECcCCcchhhhHHHhc--------CCCCCCEEECCCCCchh
Confidence 1356678889999988766665666654 57889999998887555
Q ss_pred hhhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecC
Q 048789 620 EIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDG 675 (724)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~ 675 (724)
.+. ...+.+++|++|+|++|+.+..+|.....+++|+.+.+..
T Consensus 268 ~~p-------------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 268 TLP-------------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp BCC-------------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hcc-------------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 442 2355688999999999888888887777788888877653
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=2.8e-19 Score=190.64 Aligned_cols=273 Identities=18% Similarity=0.179 Sum_probs=158.5
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CC-chhhhccccCCeeecCCCCccccchHH-hccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PL-LFEISKVVSLQHLDLSHSRIERLPIEF-KYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~L~ 466 (724)
+++|++|++++|.+...++..|..+++|++|+++++. .+ |..++.+++|++|++++|.+..+|..+ ..+++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 4556666666666555555556666666666666665 33 334566666666666666666666553 5666666666
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCccccccccc-----CCcccchHHhhcCCCCCeEEEEEcchhhhHHHhc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILF-----GDCRVLVEELLCLEHLSVFTITLNNFHALQRLLD 541 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~ 541 (724)
+++|. +..+++..+..+++|++|++.+|.... ++..... .-....+..+....+|+.|+++.+.+..++.
T Consensus 148 L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--- 222 (390)
T 3o6n_A 148 MSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--- 222 (390)
T ss_dssp CCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC---
T ss_pred CCCCc-cCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccc---
Confidence 66663 444444445666666666666553221 0000000 0000000111112233333333333222210
Q ss_pred cccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhh
Q 048789 542 SCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEI 621 (724)
Q Consensus 542 ~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l 621 (724)
....+|+.|.+.++.- ... ..+..+++|++|++++|.++++.|..+. .+++|+.|+++++. +..+
T Consensus 223 ---~~~~~L~~L~l~~n~l-~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~L~~n~-l~~~ 287 (390)
T 3o6n_A 223 ---PVNVELTILKLQHNNL-TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV--------KMQRLERLYISNNR-LVAL 287 (390)
T ss_dssp ---CCCSSCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSCCCEEESGGGT--------TCSSCCEEECCSSC-CCEE
T ss_pred ---cccccccEEECCCCCC-ccc--HHHcCCCCccEEECCCCcCCCcChhHcc--------ccccCCEEECCCCc-Cccc
Confidence 0012566666666432 222 3567788899999999888877676664 57889999998874 2222
Q ss_pred hccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCCCCCCCCcceEEec
Q 048789 622 ISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLDCNRGLERKIIIKG 698 (724)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~l~~~~~ 698 (724)
. .....+|+|++|+++++ .++.++.....+++|+.|.+++|+ ++.+|......++.|.+..+
T Consensus 288 ~-------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 288 N-------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp E-------------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred C-------------cccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCC
Confidence 1 23456899999999986 677776666678999999999985 78888766666777766554
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=3.3e-19 Score=200.82 Aligned_cols=274 Identities=18% Similarity=0.181 Sum_probs=185.1
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCCccccchHH-hccccCcEe
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSRIERLPIEF-KYLVNLKCL 465 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~L 465 (724)
.+++|++|++++|.+...++..|..+++|++|+|++|. .+| ..++++++|++|+|++|.+..+|..+ +++++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 35788889998888888887778888889999998888 444 45688889999999998888888764 788889999
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCccccccccc-----CCcccchHHhhcCCCCCeEEEEEcchhhhHHHh
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILF-----GDCRVLVEELLCLEHLSVFTITLNNFHALQRLL 540 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~ 540 (724)
++++|. +..+++..++.+++|++|++++|.... ++..... .-....+..+....+|+.|+++.+.+..++...
T Consensus 153 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 153 SMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp ECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred EeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence 998884 566666558888899999888775322 1100000 000011112223344555555444433222110
Q ss_pred ccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhh
Q 048789 541 DSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEE 620 (724)
Q Consensus 541 ~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~ 620 (724)
..+|+.|.++++.- ... ..+..+++|+.|++++|.+.++.|..++ .+++|+.|+|++|. +..
T Consensus 231 ------~~~L~~L~L~~n~l-~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~Ls~N~-l~~ 292 (597)
T 3oja_B 231 ------NVELTILKLQHNNL-TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV--------KMQRLERLYISNNR-LVA 292 (597)
T ss_dssp ------CSCCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSCCCEEESGGGT--------TCSSCCEEECTTSC-CCE
T ss_pred ------CCCCCEEECCCCCC-CCC--hhhccCCCCCEEECCCCccCCCCHHHhc--------CccCCCEEECCCCC-CCC
Confidence 12577777776542 222 3577889999999999999887777765 57888889888764 222
Q ss_pred hhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCCCCCCCCcceEEec
Q 048789 621 IISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLDCNRGLERKIIIKG 698 (724)
Q Consensus 621 l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~l~~~~~ 698 (724)
+. .....+|+|+.|+|+++ .+..++.....+++|+.|.+++|+ +..+|+.....|..|.+..+
T Consensus 293 l~-------------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 293 LN-------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp EE-------------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred CC-------------cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCC
Confidence 21 23456889999999885 566666655678899999998874 67777766666666666544
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=1.5e-18 Score=182.03 Aligned_cols=252 Identities=15% Similarity=0.213 Sum_probs=142.3
Q ss_pred CCCCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchHHhccccCc
Q 048789 385 FSESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLK 463 (724)
Q Consensus 385 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~ 463 (724)
++....+++|++|++++|.+...++ +..+++|++|+++++. .-.+.+..+++|++|++++|.+..+|. +..+++|+
T Consensus 59 ~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 59 IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence 3344567788888888887766654 7788888888888887 333467888888888888888887776 77888888
Q ss_pred EeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccc
Q 048789 464 CLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSC 543 (724)
Q Consensus 464 ~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~ 543 (724)
+|++++|.....++. +..+++|++|++.+|..... ..+..+++|+.|+++.+.+..++.+...
T Consensus 136 ~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~~~~l- 198 (347)
T 4fmz_A 136 SLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV--------------TPIANLTDLYSLSLNYNQIEDISPLASL- 198 (347)
T ss_dssp EEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC--------------GGGGGCTTCSEEECTTSCCCCCGGGGGC-
T ss_pred EEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc--------------hhhccCCCCCEEEccCCcccccccccCC-
Confidence 888888755555443 77888888888876643221 1144555666666555544433321111
Q ss_pred cccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccc--------------cCCCCcce
Q 048789 544 MLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRE--------------LSAPNLKR 609 (724)
Q Consensus 544 ~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~--------------~~l~~L~~ 609 (724)
.+|+.|.+.++. ..... .+..+++|++|++++|.++.+.+ +..+++|+. ..+++|+.
T Consensus 199 ----~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (347)
T 4fmz_A 199 ----TSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKM 269 (347)
T ss_dssp ----TTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred ----CccceeecccCC-CCCCc--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence 134444444432 11111 13444455555555544443211 111000000 23455556
Q ss_pred EEEecCcchhhhhccCCCCCcccccccCCCcccccceecccccccccccc-CCCCCCCCccEEeecCCCCCCCC
Q 048789 610 VEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIH-SKALPFPCLKEMSVDGCPLLKKL 682 (724)
Q Consensus 610 L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~-~~~~~~p~L~~L~i~~C~~L~~l 682 (724)
|++++|. +..+ .....+++|+.|++++++ ++... .....+++|+.|.+++|+ ++.+
T Consensus 270 L~l~~n~-l~~~--------------~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 270 LNVGSNQ-ISDI--------------SVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp EECCSSC-CCCC--------------GGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred EEccCCc-cCCC--------------hhhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccc
Confidence 6555552 1111 123456777777777753 33222 223456777777777775 4444
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=4.8e-19 Score=182.39 Aligned_cols=250 Identities=18% Similarity=0.162 Sum_probs=188.1
Q ss_pred CcceEEEeecccccc--cChhhhhcCCCceEEEccC-CC---CCchhhhccccCCeeecCCCCcc-ccchHHhccccCcE
Q 048789 392 PRLRTLFLSSNIFHR--VNSDFFQSMASLRVLKLSY-SN---PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNLKC 464 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~--~~~~~~~~l~~Lr~L~l~~-~~---~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~ 464 (724)
.+++.|++++|.+.. ..+..|..+++|++|++++ +. .+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999876 5667799999999999995 66 79999999999999999999998 88999999999999
Q ss_pred eecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCC-CCCeEEEEEcchh-hhHHHhcc
Q 048789 465 LNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLE-HLSVFTITLNNFH-ALQRLLDS 542 (724)
Q Consensus 465 L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~L~~L~i~~~~~~-~~~~~~~~ 542 (724)
|++++|.....+|.. +..+++|++|++.+|.... .....+..+. +|+.|+++.+.+. ..+..+..
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 999999644477876 9999999999999876432 2344567777 8999998877664 22222211
Q ss_pred ccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhh
Q 048789 543 CMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEII 622 (724)
Q Consensus 543 ~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~ 622 (724)
..|+.|.++++. +.......+..+++|+.|++++|.++...|. + ..+++|++|+++++.-...+.
T Consensus 197 -----l~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~--------~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 197 -----LNLAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V--------GLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp -----CCCSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECCBGGG-C--------CCCTTCCEEECCSSCCEECCC
T ss_pred -----CcccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCceeeecCc-c--------cccCCCCEEECcCCcccCcCC
Confidence 147788887653 2323334677889999999999887654333 2 246899999998875321211
Q ss_pred ccCCCCCcccccccCCCcccccceeccccccccc-cccCCCCCCCCccEEeecCCCCCCCCCC
Q 048789 623 SSEKLSEVPAEVMENLIPFARLERLILEELKNLK-TIHSKALPFPCLKEMSVDGCPLLKKLPL 684 (724)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~-~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 684 (724)
.....+++|++|+|+++ .++ .++.. ..+++|+.+.+.+.+.+...|.
T Consensus 262 -------------~~l~~l~~L~~L~Ls~N-~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 262 -------------QGLTQLKFLHSLNVSFN-NLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp -------------GGGGGCTTCCEEECCSS-EEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred -------------hHHhcCcCCCEEECcCC-cccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 23556889999999985 444 55543 6788888888888887776654
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=9.4e-18 Score=183.94 Aligned_cols=261 Identities=20% Similarity=0.198 Sum_probs=163.5
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchH-HhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l 467 (724)
+.+++|++++|.+....+..|..+++|++|+|+++. ..|..+.++++|++|+|++|.+..+|.. +.++.+|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 578888888888888877778888888888888887 4477888888888888888888888765 678888888888
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHH-Hhcccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQR-LLDSCMLQ 546 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~-~~~~~~l~ 546 (724)
++|. +..+++..+..+++|++|++.+|..... ....+..+++|+.|+++.+.+..++. .+...
T Consensus 112 s~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--- 175 (477)
T 2id5_A 112 SENK-IVILLDYMFQDLYNLKSLEVGDNDLVYI------------SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL--- 175 (477)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEEECCTTCCEE------------CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC---
T ss_pred CCCc-cccCChhHccccccCCEEECCCCcccee------------ChhhccCCCCCCEEECCCCcCcccChhHhccc---
Confidence 8884 5555554588888888888887653221 12234556667777776665554332 11111
Q ss_pred ccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccc----------------cCCCCcceE
Q 048789 547 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRE----------------LSAPNLKRV 610 (724)
Q Consensus 547 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~----------------~~l~~L~~L 610 (724)
.+|+.|.+.++. +..+....+..+++|++|+++++......|.......+|.. ..+++|+.|
T Consensus 176 -~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 176 -HGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp -TTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred -CCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence 155566665532 22333334555556666666553322222222211000000 235667777
Q ss_pred EEecCcchhhhhccCCCCCcccccccCCCcccccceecccccccccccc-CCCCCCCCccEEeecCCCCCCCCCCC
Q 048789 611 EIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIH-SKALPFPCLKEMSVDGCPLLKKLPLD 685 (724)
Q Consensus 611 ~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~-~~~~~~p~L~~L~i~~C~~L~~lp~~ 685 (724)
+|+++. +..+.. .....+++|+.|+|+++ +++.+. .....+++|+.|.+++| +++.+|..
T Consensus 254 ~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 254 NLSYNP-ISTIEG------------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp ECCSSC-CCEECT------------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGG
T ss_pred ECCCCc-CCccCh------------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHh
Confidence 766654 222211 13456788888888874 555553 34456888999999887 67777654
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=4e-18 Score=181.71 Aligned_cols=257 Identities=18% Similarity=0.250 Sum_probs=181.5
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CC-chhhhccccCCeeecCCCCccccch-HHhccccCcE
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PL-LFEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKC 464 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l-p~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~ 464 (724)
..+++++.|++.+|.+..+++..|..+++|++|+++++. .+ |..+..+++|++|++++|.+..+|. .++.+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 346899999999999999999999999999999999998 44 4589999999999999999998764 4899999999
Q ss_pred eecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccc
Q 048789 465 LNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCM 544 (724)
Q Consensus 465 L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~ 544 (724)
|++++| .+..+|...++.+++|++|++.+|.... .....+..+++|+.|+++.+.+..++ +. .
T Consensus 122 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~ 184 (390)
T 3o6n_A 122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER------------IEDDTFQATTSLQNLQLSSNRLTHVD-LS---L 184 (390)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB------------CCTTTTSSCTTCCEEECCSSCCSBCC-GG---G
T ss_pred EECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCc------------cChhhccCCCCCCEEECCCCcCCccc-cc---c
Confidence 999999 5788998867999999999999875432 11233667888888888877765432 11 1
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCcccccc-----------ccCCCCcceEEEe
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVR-----------ELSAPNLKRVEIE 613 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~-----------~~~l~~L~~L~l~ 613 (724)
..+|+.|.++++. .. .+..+++|++|++++|.+..+.......+..|. -..+++|+.|+++
T Consensus 185 --l~~L~~L~l~~n~-l~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 185 --IPSLFHANVSYNL-LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 256 (390)
T ss_dssp --CTTCSEEECCSSC-CS-----EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred --ccccceeeccccc-cc-----ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECC
Confidence 1145566655432 11 122334455555555544443211111111000 0346788888888
Q ss_pred cCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCC
Q 048789 614 NCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLD 685 (724)
Q Consensus 614 ~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~ 685 (724)
++. +..+.. .....+++|++|+|++ .+++.++.....+|+|+.|.+++| .+..+|..
T Consensus 257 ~n~-l~~~~~------------~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 313 (390)
T 3o6n_A 257 YNE-LEKIMY------------HPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERN 313 (390)
T ss_dssp SSC-CCEEES------------GGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred CCc-CCCcCh------------hHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCcc
Confidence 764 222211 2455689999999998 578888777778999999999998 67777654
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=6.4e-18 Score=175.67 Aligned_cols=244 Identities=18% Similarity=0.242 Sum_probs=173.8
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccchHHhccccCcEeec
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNL 467 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 467 (724)
.+.+++|++++|.+...++..|..+++|++|+++++. . .|..++.+++|++|++++|.+..+|..+. .+|++|++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 3688999999999888888788999999999999988 4 47889999999999999999998887665 78999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQY 547 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 547 (724)
++| .+..++...+..+++|++|++.+|.... .......+..+++|+.|.++.+.+..++....
T Consensus 129 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~------ 191 (330)
T 1xku_A 129 HEN-EITKVRKSVFNGLNQMIVVELGTNPLKS----------SGIENGAFQGMKKLSYIRIADTNITTIPQGLP------ 191 (330)
T ss_dssp CSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG----------GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC------
T ss_pred CCC-cccccCHhHhcCCccccEEECCCCcCCc----------cCcChhhccCCCCcCEEECCCCccccCCcccc------
Confidence 988 4677887778999999999998775421 11233456778889988888777665432111
Q ss_pred cccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCC
Q 048789 548 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKL 627 (724)
Q Consensus 548 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 627 (724)
.+|+.|.++++. +.......+..+++|++|++++|.++.+.+.++. .+++|+.|++++|. +..+.
T Consensus 192 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~L~~N~-l~~lp----- 256 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--------NTPHLRELHLNNNK-LVKVP----- 256 (330)
T ss_dssp TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--------GSTTCCEEECCSSC-CSSCC-----
T ss_pred ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhcc--------CCCCCCEEECCCCc-CccCC-----
Confidence 267777777643 4444444667778888888888877765444443 46778888887764 22221
Q ss_pred CCcccccccCCCcccccceeccccccccccccCCC-------CCCCCccEEeecCCC
Q 048789 628 SEVPAEVMENLIPFARLERLILEELKNLKTIHSKA-------LPFPCLKEMSVDGCP 677 (724)
Q Consensus 628 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~-------~~~p~L~~L~i~~C~ 677 (724)
.....+++|++|+++++ .++.++... ..++.|+.|.+.+.|
T Consensus 257 --------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 257 --------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp --------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred --------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 23456778888888773 455554321 124667777776655
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=9.6e-18 Score=182.79 Aligned_cols=284 Identities=18% Similarity=0.220 Sum_probs=155.1
Q ss_pred CCCCCcceEEEeeccccc-ccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccc-cchH--Hhccc
Q 048789 388 SPVCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIER-LPIE--FKYLV 460 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~--i~~L~ 460 (724)
+..+++|++|++++|.+. .+++..|..+++|++|+++++. ..|..++++++|++|++++|.+.. .|.. ++.+.
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 345667777777777654 4445566777777777777776 346667777777777777776663 3443 66777
Q ss_pred cCcEeecCCccccccc-ChhhhcCCCcCcEEeccccCCCccccccccc-------------CCcc---------cchHHh
Q 048789 461 NLKCLNLEYTYGVLKI-PPKVISNLKILQTLRMYECATVPQARDSILF-------------GDCR---------VLVEEL 517 (724)
Q Consensus 461 ~L~~L~l~~~~~~~~l-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-------------~~~~---------~~~~~L 517 (724)
+|++|++++|. +..+ |...+..+++|++|++.+|......+..+.. .... .....+
T Consensus 130 ~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 130 SLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred cCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 77777777774 3333 4444667777777777766432211111000 0000 000012
Q ss_pred hcCCCCCeEEEEEcchhhh-HH-Hhcc---ccc-------------------------------cccccCcEEeeccCCC
Q 048789 518 LCLEHLSVFTITLNNFHAL-QR-LLDS---CML-------------------------------QYVSTPSLCLSHFNNS 561 (724)
Q Consensus 518 ~~L~~L~~L~i~~~~~~~~-~~-~~~~---~~l-------------------------------~~~~L~~L~l~~~~~~ 561 (724)
..+++|+.|+++.+.+... +. +... ..+ ...+|+.|+++++. +
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l 287 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-I 287 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-C
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-c
Confidence 2345566666665554321 11 1111 000 00123333333321 1
Q ss_pred CcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcc
Q 048789 562 KSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPF 641 (724)
Q Consensus 562 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~f 641 (724)
.......+..+++|++|++++|.++.+.|..+. .+++|+.|++++|. +..+.. .....+
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l 346 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--------GLTHLLKLNLSQNF-LGSIDS------------RMFENL 346 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSC-CCEECG------------GGGTTC
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhc--------CcccCCEEECCCCc-cCCcCh------------hHhcCc
Confidence 222222344555566666655555554444443 46778888888774 222211 234568
Q ss_pred cccceeccccccccccc-cCCCCCCCCccEEeecCCCCCCCCCCCCCC---CCCcceEE
Q 048789 642 ARLERLILEELKNLKTI-HSKALPFPCLKEMSVDGCPLLKKLPLDCNR---GLERKIII 696 (724)
Q Consensus 642 p~L~~L~l~~~~~L~~~-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~---~l~~l~~~ 696 (724)
++|++|+|+++ .++.+ +.....+++|+.|.+++| +++.+|...-. .++.|.+.
T Consensus 347 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 347 DKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred ccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEcc
Confidence 99999999885 55555 345567899999999986 67788765432 44444443
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=3.1e-18 Score=197.50 Aligned_cols=286 Identities=13% Similarity=0.152 Sum_probs=174.3
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-----CCchhhhccc-------cCCeeecCCCCccccch--H
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-----PLLFEISKVV-------SLQHLDLSHSRIERLPI--E 455 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-----~lp~~i~~L~-------~L~~L~L~~~~i~~Lp~--~ 455 (724)
.+++|++|++++|.+....|..|.++++|++|++++|. .+|..++.+. +|++|+|++|.+..+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 68999999999998777777889999999999999996 4888888887 99999999999999999 8
Q ss_pred HhccccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCC-CCeEEEEEcchh
Q 048789 456 FKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEH-LSVFTITLNNFH 534 (724)
Q Consensus 456 i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~-L~~L~i~~~~~~ 534 (724)
++++++|++|++++|. +..+| . ++.+++|++|++.+|... .+| ..+..+++ |+.|+++.+.+.
T Consensus 569 l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~~L~Ls~N~l~-~lp------------~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLTDLKLDYNQIE-EIP------------EDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp HTTCTTCCEEECTTSC-CCBCC-C-CCTTSEESEEECCSSCCS-CCC------------TTSCEECTTCCEEECCSSCCC
T ss_pred hhcCCCCCEEECCCCC-cccch-h-hcCCCcceEEECcCCccc-cch------------HHHhhccccCCEEECcCCCCC
Confidence 9999999999999995 56899 4 899999999999987643 222 23444555 666666555544
Q ss_pred hhHHHhcccc---------------------------ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcce
Q 048789 535 ALQRLLDSCM---------------------------LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEE 587 (724)
Q Consensus 535 ~~~~~~~~~~---------------------------l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 587 (724)
.++..+.... +...+|+.|.++++. +..++...+..+++|+.|++++|.++.
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCc
Confidence 3332111100 011133444444322 112222122345666666666666654
Q ss_pred EEEccCCccccccccCCCCcceEEEecCcchhhhhc----------------cCCCCCcccccccCCCcccccceecccc
Q 048789 588 IKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIIS----------------SEKLSEVPAEVMENLIPFARLERLILEE 651 (724)
Q Consensus 588 ~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~----------------~~~~~~~~~~~~~~~~~fp~L~~L~l~~ 651 (724)
+ |.+......-....+++|+.|+|++|. +..+.. .+.+..+| .....+++|+.|+|++
T Consensus 712 i-p~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp----~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 712 I-PENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFP----TQPLNSSQLKAFGIRH 785 (876)
T ss_dssp C-CTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSSCC----CGGGGCTTCCEEECCC
T ss_pred c-ChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCccc----hhhhcCCCCCEEECCC
Confidence 3 322211000000011244444444432 111100 00111111 2344677777777765
Q ss_pred cc------ccccccCCCCCCCCccEEeecCCCCCCCCCCCCCCCCCcceEEech
Q 048789 652 LK------NLKTIHSKALPFPCLKEMSVDGCPLLKKLPLDCNRGLERKIIIKGQ 699 (724)
Q Consensus 652 ~~------~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~l~~~~~~ 699 (724)
++ -...++.....+++|+.|.+++|.- ..+|......|+.|.+..++
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 32 2334444555678888888888754 78887655556666655553
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=2.9e-18 Score=178.39 Aligned_cols=244 Identities=19% Similarity=0.239 Sum_probs=174.1
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchHHhccccCcEeec
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNL 467 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 467 (724)
.+.|++|++++|.+...++..|..+++|++|+++++. ..|..++.+++|++|++++|.+..+|..+. .+|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 3688999999998888888788999999999999888 447788899999999999999888887765 78999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQY 547 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 547 (724)
++|. +..+|...+..+++|++|++.+|.... .......+..+ +|+.|+++.+.+..++....
T Consensus 131 ~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~------ 192 (332)
T 2ft3_A 131 HDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN----------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP------ 192 (332)
T ss_dssp CSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG----------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC------
T ss_pred CCCc-cCccCHhHhCCCccCCEEECCCCcccc----------CCCCcccccCC-ccCEEECcCCCCCccCcccc------
Confidence 9884 677887768889999999998775421 01122234445 77777777766655432111
Q ss_pred cccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCC
Q 048789 548 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKL 627 (724)
Q Consensus 548 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 627 (724)
.+|+.|.++++ .+.......+..+++|++|++++|.++.+.+.++. .+++|+.|++++|. +..+
T Consensus 193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L~~L~L~~N~-l~~l------ 256 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS--------FLPTLRELHLDNNK-LSRV------ 256 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--------GCTTCCEEECCSSC-CCBC------
T ss_pred CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--------CCCCCCEEECCCCc-Ceec------
Confidence 26777777764 34444444677788888999988888776554543 46888888888774 2222
Q ss_pred CCcccccccCCCcccccceeccccccccccccCCC-------CCCCCccEEeecCCCC
Q 048789 628 SEVPAEVMENLIPFARLERLILEELKNLKTIHSKA-------LPFPCLKEMSVDGCPL 678 (724)
Q Consensus 628 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~-------~~~p~L~~L~i~~C~~ 678 (724)
| .....+++|++|++++ ..++.++... ..+++|+.|.+.++|-
T Consensus 257 ---p----~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 257 ---P----AGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp ---C----TTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ---C----hhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcc
Confidence 1 2345678888888887 4566655321 1257788888888763
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=9.1e-18 Score=189.00 Aligned_cols=256 Identities=18% Similarity=0.243 Sum_probs=181.1
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccchH-HhccccCcEe
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCL 465 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L 465 (724)
.+.+++.|++.+|.+..+++..|..+++|++|+++++. . .|..++.+++|++|+|++|.+..+|.. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45789999999999999999999999999999999998 3 445899999999999999999988765 6999999999
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCML 545 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l 545 (724)
++++| .+..+|...++.+++|++|++++|.... .....+..+++|+.|+++.+.+..++. . .
T Consensus 129 ~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~-~---~- 190 (597)
T 3oja_B 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER------------IEDDTFQATTSLQNLQLSSNRLTHVDL-S---L- 190 (597)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB------------CCTTTTTTCTTCCEEECTTSCCSBCCG-G---G-
T ss_pred EeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCC------------CChhhhhcCCcCcEEECcCCCCCCcCh-h---h-
Confidence 99999 5788998867999999999999885432 122346678888888887776654321 0 0
Q ss_pred cccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCcccccc-----------ccCCCCcceEEEec
Q 048789 546 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVR-----------ELSAPNLKRVEIEN 614 (724)
Q Consensus 546 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~-----------~~~l~~L~~L~l~~ 614 (724)
..+|+.|.++++. +. .+..+++|+.|++++|.+..+.+.....+..|. -..+++|+.|+|++
T Consensus 191 -l~~L~~L~l~~n~-l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 191 -IPSLFHANVSYNL-LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp -CTTCSEEECCSSC-CS-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred -hhhhhhhhcccCc-cc-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCC
Confidence 1145556555432 11 122334455555555444443221111111000 03568888888887
Q ss_pred CcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCC
Q 048789 615 CQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLD 685 (724)
Q Consensus 615 c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~ 685 (724)
|. +..++ +...+.+++|+.|+|++ ..++.++.....+|+|+.|.+++| .+..+|..
T Consensus 264 N~-l~~~~------------~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~ 319 (597)
T 3oja_B 264 NE-LEKIM------------YHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERN 319 (597)
T ss_dssp SC-CCEEE------------SGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred Cc-cCCCC------------HHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCccCcc
Confidence 64 22221 12456789999999998 578888877778999999999997 45677644
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=6.7e-18 Score=191.22 Aligned_cols=148 Identities=11% Similarity=0.215 Sum_probs=115.9
Q ss_pred CCCCCcceEEEeeccccccc-----------------Chhhhh--cCCCceEEEccCCC---CCchhhhccccCCeeecC
Q 048789 388 SPVCPRLRTLFLSSNIFHRV-----------------NSDFFQ--SMASLRVLKLSYSN---PLLFEISKVVSLQHLDLS 445 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~-----------------~~~~~~--~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~ 445 (724)
...+++|++|++++|.+... .|..+. ++++|++|++++|. .+|+.++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 45678999999999998773 455577 99999999999997 899999999999999999
Q ss_pred CCC-cc--ccchHHhcc------ccCcEeecCCcccccccCh--hhhcCCCcCcEEeccccCCCccccccc---------
Q 048789 446 HSR-IE--RLPIEFKYL------VNLKCLNLEYTYGVLKIPP--KVISNLKILQTLRMYECATVPQARDSI--------- 505 (724)
Q Consensus 446 ~~~-i~--~Lp~~i~~L------~~L~~L~l~~~~~~~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~--------- 505 (724)
+|. +. .+|..++++ ++|++|++++|. +..+|. . ++.+++|++|++.+|.....+| .+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 997 87 599999887 999999999995 568997 5 8999999999999886553444 11
Q ss_pred --ccCCcccchHHhhcCCC-CCeEEEEEcchhhhHH
Q 048789 506 --LFGDCRVLVEELLCLEH-LSVFTITLNNFHALQR 538 (724)
Q Consensus 506 --~~~~~~~~~~~L~~L~~-L~~L~i~~~~~~~~~~ 538 (724)
........+..+..+++ |+.|+++.+.+..++.
T Consensus 359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp ECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred ECCCCccccccHhhhhhcccCcEEEccCCcCcccch
Confidence 11122233455677777 8888888777665543
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=182.08 Aligned_cols=255 Identities=23% Similarity=0.296 Sum_probs=168.0
Q ss_pred CCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCcccc-chHHhccccC
Q 048789 387 ESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERL-PIEFKYLVNL 462 (724)
Q Consensus 387 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L 462 (724)
.+..+++|++|++++|.+....+..|.++++|++|+|+++. .+|. .+.++++|++|+|++|.+..+ |..+..+.+|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 34667889999999998888878888999999999999888 6665 468889999999999988765 5568888999
Q ss_pred cEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHH-hc
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRL-LD 541 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~-~~ 541 (724)
++|++++|. +..++...+..+++|++|++.+|.... + ....+..+++|+.|++..+.+..+... +.
T Consensus 131 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~-----------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 131 KSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS-I-----------PTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp CEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS-C-----------CHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred CEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc-c-----------ChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 999998884 555655558888889999888774321 1 122345555556555554444322110 00
Q ss_pred c--------------------ccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccc
Q 048789 542 S--------------------CMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRE 601 (724)
Q Consensus 542 ~--------------------~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 601 (724)
. ......+|+.|.++++. +..++...+..+++|+.|++++|.++.+.+..+.
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------- 269 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH------- 269 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT-------
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhcc-------
Confidence 0 00011145555555532 3333333456677788888888777765444443
Q ss_pred cCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccCC-CCCCCCccEEeecCCC
Q 048789 602 LSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSK-ALPFPCLKEMSVDGCP 677 (724)
Q Consensus 602 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~-~~~~p~L~~L~i~~C~ 677 (724)
.+++|+.|+|+++. +..+.. .....+++|+.|+|+++ +++.++.. ...+++|+.|.+.++|
T Consensus 270 -~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 270 -ELLRLQEIQLVGGQ-LAVVEP------------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -TCTTCCEEECCSSC-CSEECT------------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -ccccCCEEECCCCc-cceECH------------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 46888889888774 222211 23456788999999884 66666543 2457788888887654
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=176.19 Aligned_cols=255 Identities=22% Similarity=0.222 Sum_probs=182.9
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchH-HhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
.++|++|++++|.+...++..|..+++|++|+++++. ..|..+.++++|++|++++|.+..+|.. ++.+++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 3689999999999988888789999999999999998 3456799999999999999999999877 88999999999
Q ss_pred cCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhh-HHHhcccc
Q 048789 467 LEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHAL-QRLLDSCM 544 (724)
Q Consensus 467 l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~-~~~~~~~~ 544 (724)
+++| .+..+|. ..+..+++|++|++.+|.....+ ....+..+++|+.|+++.+.+... +..+..
T Consensus 131 L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-- 196 (353)
T 2z80_A 131 LLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI-----------QRKDFAGLTFLEELEIDASDLQSYEPKSLKS-- 196 (353)
T ss_dssp CTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-----------CTTTTTTCCEEEEEEEEETTCCEECTTTTTT--
T ss_pred CCCC-CCcccCchhhhccCCCCcEEECCCCcccccc-----------CHHHccCCCCCCEEECCCCCcCccCHHHHhc--
Confidence 9998 4678887 45889999999999987543321 123466788899999998876543 221111
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhcc
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISS 624 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~ 624 (724)
..+|+.|.++++. ...++...+..+++|+.|++++|.++...+..+... ...+.++.+.++++.--..-
T Consensus 197 --l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-----~~~~~l~~l~L~~~~l~~~~--- 265 (353)
T 2z80_A 197 --IQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG-----ETNSLIKKFTFRNVKITDES--- 265 (353)
T ss_dssp --CSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------CCCCCCEEEEESCBCCHHH---
T ss_pred --cccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccc-----cccchhhccccccccccCcc---
Confidence 1267888888754 333333334567899999999988776544333211 23466777777766421110
Q ss_pred CCCCCcccccccCCCcccccceeccccccccccccCCC-CCCCCccEEeecCCC
Q 048789 625 EKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKA-LPFPCLKEMSVDGCP 677 (724)
Q Consensus 625 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~-~~~p~L~~L~i~~C~ 677 (724)
...+ +.....+++|++|+|+++ +++.++... ..+++|+.|.+++++
T Consensus 266 --l~~l----~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 --LFQV----MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp --HHHH----HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --hhhh----HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 0011 113456889999999884 777777654 678899999998874
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.4e-17 Score=180.94 Aligned_cols=221 Identities=19% Similarity=0.239 Sum_probs=159.1
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchH-HhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l 467 (724)
++++.|++++|.+....+..|.++++|++|+|+++. ..|..+.++++|++|+|++|.+..+|.. +..+.+|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 689999999999988888889999999999999998 4457889999999999999999988865 788999999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQY 547 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 547 (724)
++|. +..+|...+..+++|++|++.+|..+..++ ...+..+.+|+.|+++.+.+..++.+.. .
T Consensus 155 ~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----l 217 (452)
T 3zyi_A 155 RNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS-----------EGAFEGLFNLKYLNLGMCNIKDMPNLTP-----L 217 (452)
T ss_dssp CSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------TTTTTTCTTCCEEECTTSCCSSCCCCTT-----C
T ss_pred CCCC-cceeCHhHHhcCCcccEEeCCCCCCccccC-----------hhhccCCCCCCEEECCCCcccccccccc-----c
Confidence 9994 778888778999999999999876554322 1235667888888887776655432211 1
Q ss_pred cccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCC
Q 048789 548 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKL 627 (724)
Q Consensus 548 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 627 (724)
.+|+.|+++++. +..+....+..+++|+.|++++|.++.+.+..+. .+++|+.|+|+++. +..+..
T Consensus 218 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~N~-l~~~~~---- 283 (452)
T 3zyi_A 218 VGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--------GLASLVELNLAHNN-LSSLPH---- 283 (452)
T ss_dssp TTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSC-CSCCCT----
T ss_pred ccccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhc--------CCCCCCEEECCCCc-CCccCh----
Confidence 256666666643 3444444566677777777777777665555543 45677777777663 222211
Q ss_pred CCcccccccCCCcccccceecccc
Q 048789 628 SEVPAEVMENLIPFARLERLILEE 651 (724)
Q Consensus 628 ~~~~~~~~~~~~~fp~L~~L~l~~ 651 (724)
.....+++|+.|+|++
T Consensus 284 --------~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 284 --------DLFTPLRYLVELHLHH 299 (452)
T ss_dssp --------TSSTTCTTCCEEECCS
T ss_pred --------HHhccccCCCEEEccC
Confidence 1234567777777766
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.6e-17 Score=191.62 Aligned_cols=180 Identities=13% Similarity=0.203 Sum_probs=137.5
Q ss_pred CCCCCcceEEEeecccccc-----------------cChhhhh--cCCCceEEEccCCC---CCchhhhccccCCeeecC
Q 048789 388 SPVCPRLRTLFLSSNIFHR-----------------VNSDFFQ--SMASLRVLKLSYSN---PLLFEISKVVSLQHLDLS 445 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~-----------------~~~~~~~--~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~ 445 (724)
...+++|++|++++|.+.. ..|..+. ++++|++|+|++|. .+|..+++|++|++|+|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4568899999999999887 1344455 99999999999997 899999999999999999
Q ss_pred CCC-cc--ccchHHhccc-------cCcEeecCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccch
Q 048789 446 HSR-IE--RLPIEFKYLV-------NLKCLNLEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLV 514 (724)
Q Consensus 446 ~~~-i~--~Lp~~i~~L~-------~L~~L~l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 514 (724)
+|. +. .+|..++++. +|++|++++|. +..+|. +.++.+++|++|++++|... .+ .
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l------------p 589 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HL------------E 589 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BC------------C
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cc------------h
Confidence 997 87 4999998887 99999999995 569998 23999999999999987633 22 1
Q ss_pred HHhhcCCCCCeEEEEEcchhhhHHHhccccccccc-cCcEEeeccCCCCcccccccccc--cccceEEeecCCcceE
Q 048789 515 EELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVS-TPSLCLSHFNNSKSLGVFSLASL--RHLQTLHLTYNDLEEI 588 (724)
Q Consensus 515 ~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~l~~~ 588 (724)
.+..+++|+.|+++.+.+..++..+... .+ |+.|.++++. +..++ ..+..+ ++|+.|++++|.+.+.
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~~lp~~l~~l----~~~L~~L~Ls~N~-L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIEEIPEDFCAF----TDQVEGLGFSHNK-LKYIP-NIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp -CCCTTSEESEEECCSSCCSCCCTTSCEE----CTTCCEEECCSSC-CCSCC-SCCCTTCSSCEEEEECCSSCTTTT
T ss_pred -hhcCCCcceEEECcCCccccchHHHhhc----cccCCEEECcCCC-CCcCc-hhhhccccCCCCEEECcCCcCCCc
Confidence 5677889999999988877555322211 25 8888888764 33332 123333 3488888888776543
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=6.5e-17 Score=183.03 Aligned_cols=109 Identities=21% Similarity=0.199 Sum_probs=87.6
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CC-chhhhccccCCeeecCCCCccccc-hHHhccccCc
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PL-LFEISKVVSLQHLDLSHSRIERLP-IEFKYLVNLK 463 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l-p~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~ 463 (724)
+..+++|++|++++|.+...++..|.++++|++|+++++. .+ |..++++++|++|++++|.+..+| ..++++++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 4567888889998888888878788888889999998887 44 778888888999999888888776 5688888888
Q ss_pred EeecCCccccc-ccChhhhcCCCcCcEEeccccCC
Q 048789 464 CLNLEYTYGVL-KIPPKVISNLKILQTLRMYECAT 497 (724)
Q Consensus 464 ~L~l~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~ 497 (724)
+|++++|.... .+|.. ++++++|++|++.+|..
T Consensus 132 ~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp EEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred EEeCCCCcccceechHh-HhhcCCCCEEEccCCcc
Confidence 88888885322 46766 88888888888887753
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=3e-17 Score=185.83 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=165.0
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCcccc-chHHhccccCcEeecCC
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~ 469 (724)
.|+.|++++|.+...++..|..+++|++|+++++. .+|..++.+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 78999999999988888889999999999999998 8999999999999999999998876 55789999999999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhH-HHhcccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQ-RLLDSCMLQYV 548 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~-~~~~~~~l~~~ 548 (724)
|.....+|...+..+++|++|++.+|..... ......+..+++|+.|+++.+.+.... ..+.. ..
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~ 400 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETS----------DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE----CP 400 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEE----------EESTTTTTTCTTCCEEECCSCSCEEECTTTTTT----CT
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccc----------cCcchhcccCCCCCEEECCCCcCCcCCHHHhcC----Cc
Confidence 9655577776688999999999998754321 111334566777777777665543321 11111 11
Q ss_pred ccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccc-------------------cCCCCcce
Q 048789 549 STPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRE-------------------LSAPNLKR 609 (724)
Q Consensus 549 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~-------------------~~l~~L~~ 609 (724)
+|+.|.++++.-........+..+++|++|++++|.+....|.++..+++|.. ..+++|+.
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 56666665543211111123555666666666666655544444432111100 12344555
Q ss_pred EEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccc-cCCCCCCCCccEEeecCCCCCCCCC
Q 048789 610 VEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTI-HSKALPFPCLKEMSVDGCPLLKKLP 683 (724)
Q Consensus 610 L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~-~~~~~~~p~L~~L~i~~C~~L~~lp 683 (724)
|++++|. +..+. ....+.+++|+.|+|+++ +++.. +.....+++| .|.+++| ++..+|
T Consensus 481 L~Ls~n~-l~~~~------------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~ 539 (606)
T 3t6q_A 481 LVLSFCD-LSSID------------QHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIIL 539 (606)
T ss_dssp EECTTSC-CCEEC------------TTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCC
T ss_pred EECCCCc-cCccC------------hhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cccccC
Confidence 5554442 11111 123445677777777764 33332 2233456666 7777766 344444
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=177.81 Aligned_cols=221 Identities=21% Similarity=0.294 Sum_probs=167.7
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccch-HHhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l 467 (724)
+.++.|++++|.+....+..|.++++|++|+|+++. ..+..+.++++|++|+|++|.++.+|. .+..+.+|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 678999999999988888889999999999999998 345688999999999999999998886 4889999999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQY 547 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 547 (724)
++|. +..+|...+..+++|++|++.+|.....++ ...+..+++|+.|+++.+.+..++.+.. .
T Consensus 144 ~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----l 206 (440)
T 3zyj_A 144 RNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYIS-----------EGAFEGLSNLRYLNLAMCNLREIPNLTP-----L 206 (440)
T ss_dssp CSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------TTTTTTCSSCCEEECTTSCCSSCCCCTT-----C
T ss_pred CCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeC-----------cchhhcccccCeecCCCCcCccccccCC-----C
Confidence 9984 778888778999999999999876554322 1236678889999888777765543221 1
Q ss_pred cccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCC
Q 048789 548 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKL 627 (724)
Q Consensus 548 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 627 (724)
.+|+.|+++++ .+..+....+..+++|++|++++|.++.+.+..+. .+++|+.|+|+++. +..+..
T Consensus 207 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~N~-l~~~~~---- 272 (440)
T 3zyj_A 207 IKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--------NLQSLVEINLAHNN-LTLLPH---- 272 (440)
T ss_dssp SSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST--------TCTTCCEEECTTSC-CCCCCT----
T ss_pred cccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhc--------CCCCCCEEECCCCC-CCccCh----
Confidence 26777888775 34555555677788888888888888876565554 46788888888763 333211
Q ss_pred CCcccccccCCCcccccceecccc
Q 048789 628 SEVPAEVMENLIPFARLERLILEE 651 (724)
Q Consensus 628 ~~~~~~~~~~~~~fp~L~~L~l~~ 651 (724)
.....+++|+.|+|++
T Consensus 273 --------~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 273 --------DLFTPLHHLERIHLHH 288 (440)
T ss_dssp --------TTTSSCTTCCEEECCS
T ss_pred --------hHhccccCCCEEEcCC
Confidence 1244578888888876
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=5.6e-17 Score=183.57 Aligned_cols=106 Identities=21% Similarity=0.117 Sum_probs=53.7
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCcccc-chHHhccccCcE
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKC 464 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~ 464 (724)
..+++|++|++++|.+....+..|.++++|++|++++|. ..|..++.+++|++|++++|.+..+ |..++++++|++
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 344555555555555555555555555555555555554 2344555555555555555555544 334555555555
Q ss_pred eecCCcccccccChhhhcCCCcCcEEecccc
Q 048789 465 LNLEYTYGVLKIPPKVISNLKILQTLRMYEC 495 (724)
Q Consensus 465 L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~ 495 (724)
|++++|. +..++...+..+++|++|++.+|
T Consensus 134 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 134 LYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp EECCSSC-CCCCCCCTTCCCTTCCEEECCSS
T ss_pred EECCCCc-ccccCcccccCCcccCEEEcccC
Confidence 5555553 33331111333555555555544
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=1.7e-17 Score=170.69 Aligned_cols=230 Identities=17% Similarity=0.143 Sum_probs=177.4
Q ss_pred CCCCCcceEEEeec-ccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCcc-ccchHHhccccC
Q 048789 388 SPVCPRLRTLFLSS-NIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNL 462 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~-~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L 462 (724)
...+++|++|++++ |.+....|..|..+++|++|+++++. .+|..+..+++|++|++++|.+. .+|..+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 34578999999995 77777777789999999999999998 78999999999999999999988 889999999999
Q ss_pred cEeecCCcccccccChhhhcCCC-cCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhh-HHHh
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLK-ILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHAL-QRLL 540 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~-~~~~ 540 (724)
++|++++|.....+|.. +..++ +|++|++.+|.... .....+..++ |+.|+++.+.+... +..+
T Consensus 152 ~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG------------KIPPTFANLN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp CEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE------------ECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred CeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec------------cCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence 99999999654478887 88898 99999999875322 2333455666 99999887766532 2222
Q ss_pred ccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhh
Q 048789 541 DSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEE 620 (724)
Q Consensus 541 ~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~ 620 (724)
.. ..+|+.|.++++.-....+ .+..+++|++|++++|.+++..|.++. .+++|+.|+++++.-...
T Consensus 218 ~~----l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~--------~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 218 GS----DKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLT--------QLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CT----TSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGG--------GCTTCCEEECCSSEEEEE
T ss_pred hc----CCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCChHHh--------cCcCCCEEECcCCccccc
Confidence 11 1278888888764322222 366789999999999999866777764 578999999998853322
Q ss_pred hhccCCCCCcccccccCCCcccccceecccccccccccc
Q 048789 621 IISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIH 659 (724)
Q Consensus 621 l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~ 659 (724)
+ ...+.+++|+.|++.+.+.+...+
T Consensus 284 i--------------p~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 284 I--------------PQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp C--------------CCSTTGGGSCGGGTCSSSEEESTT
T ss_pred C--------------CCCccccccChHHhcCCCCccCCC
Confidence 2 123679999999999987776543
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=7.7e-17 Score=175.88 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=80.2
Q ss_pred CCCCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccC
Q 048789 385 FSESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNL 462 (724)
Q Consensus 385 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L 462 (724)
++....+++|++|++++|.+...++ +.++++|++|+++++. .++. ++++++|++|++++|.+..+|. +.++++|
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 4445667888899998888777655 7888889999998888 5555 8888899999998888888875 8888888
Q ss_pred cEeecCCcccccccChhhhcCCCcCcEEecc
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKILQTLRMY 493 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~ 493 (724)
++|++++|. +..+|. ++.+++|++|++.
T Consensus 137 ~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 137 NRLELSSNT-ISDISA--LSGLTSLQQLSFG 164 (466)
T ss_dssp SEEEEEEEE-ECCCGG--GTTCTTCSEEEEE
T ss_pred CEEECCCCc-cCCChh--hccCCcccEeecC
Confidence 999888884 556653 7777777777775
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=9.1e-17 Score=168.29 Aligned_cols=235 Identities=17% Similarity=0.245 Sum_probs=139.0
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeec
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNL 467 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 467 (724)
.+++|++|++++|.+...++ +..+++|++|++++|. ..+..+..+++|++|++++|.+..++. +..+++|++|++
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSL 184 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEEC
T ss_pred CCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEc
Confidence 34555555555555444332 4455555555555553 333335555555555555555554443 455555555555
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQY 547 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 547 (724)
++|. +..++. +..+++|++|++.+|... ....+..+++|+.|+++.+.+..++.+.. .
T Consensus 185 ~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----l 242 (347)
T 4fmz_A 185 NYNQ-IEDISP--LASLTSLHYFTAYVNQIT--------------DITPVANMTRLNSLKIGNNKITDLSPLAN-----L 242 (347)
T ss_dssp TTSC-CCCCGG--GGGCTTCCEEECCSSCCC--------------CCGGGGGCTTCCEEECCSSCCCCCGGGTT-----C
T ss_pred cCCc-cccccc--ccCCCccceeecccCCCC--------------CCchhhcCCcCCEEEccCCccCCCcchhc-----C
Confidence 5552 344443 455555555555544321 11126677788888887776665544211 1
Q ss_pred cccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCC
Q 048789 548 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKL 627 (724)
Q Consensus 548 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 627 (724)
.+|+.|.++++. +..+ ..+..+++|++|++++|.++.+ ..+ ..+++|+.|++++|.-.... .
T Consensus 243 ~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~--------~~l~~L~~L~L~~n~l~~~~-~---- 304 (347)
T 4fmz_A 243 SQLTWLEIGTNQ-ISDI--NAVKDLTKLKMLNVGSNQISDI--SVL--------NNLSQLNSLFLNNNQLGNED-M---- 304 (347)
T ss_dssp TTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSSCCCCC--GGG--------GGCTTCSEEECCSSCCCGGG-H----
T ss_pred CCCCEEECCCCc-cCCC--hhHhcCCCcCEEEccCCccCCC--hhh--------cCCCCCCEEECcCCcCCCcC-h----
Confidence 267778887753 3333 3567788888888888877753 222 35799999999998632221 1
Q ss_pred CCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCC
Q 048789 628 SEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCP 677 (724)
Q Consensus 628 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~ 677 (724)
.....+|+|++|++++++ ++.++. ...+++|+.|.+++|+
T Consensus 305 --------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 --------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp --------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred --------hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 134468999999999975 666544 5678999999999885
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=4.4e-17 Score=176.48 Aligned_cols=123 Identities=16% Similarity=0.188 Sum_probs=65.5
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
..+++|++|++++|.+...+ +..+++|++|+++++. .+| ++.+++|++|++++|.+..+| ++.+++|++|+
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 34455555555555554432 4555555566655555 332 555556666666655555554 55555666666
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhh
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHAL 536 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~ 536 (724)
+++|. +..+| ++.+++|++|++.+|.....+ .+..+++|+.|+++.+.+..+
T Consensus 134 l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~~--------------~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 134 CARNT-LTEID---VSHNTQLTELDCHLNKKITKL--------------DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CTTSC-CSCCC---CTTCTTCCEEECTTCSCCCCC--------------CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCCc-cceec---cccCCcCCEEECCCCCccccc--------------ccccCCcCCEEECCCCcccee
Confidence 65553 34443 455555666665555322211 244556666666665555443
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.7e-16 Score=178.16 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=66.2
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccch-HHhccccCc
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLK 463 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~ 463 (724)
+..+++|++|++++|.+...++..|.++++|++|+++++. . .|..++.+.+|++|++++|.+..+|. .++++++|+
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 3456666777777666666666666666677777776665 2 23456666666666666666666554 466666666
Q ss_pred EeecCCcccccc--cChhhhcCCCcCcEEeccccC
Q 048789 464 CLNLEYTYGVLK--IPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 464 ~L~l~~~~~~~~--lp~~~i~~l~~L~~L~l~~~~ 496 (724)
+|++++|. +.. +|.. ++++++|++|++.+|.
T Consensus 128 ~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 128 ELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNK 160 (570)
T ss_dssp EEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred EEecCCCc-cceecChhh-hcccCCCCEEeCcCCc
Confidence 66666663 332 4554 6666666666666553
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=175.44 Aligned_cols=102 Identities=24% Similarity=0.262 Sum_probs=83.5
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
++|++|++++|.+...++..|..+++|++|+++++. . .|..++++++|++|+|++|.++.+|.. .+.+|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 788899999988888887788888999999999888 3 467888889999999999888888877 78889999998
Q ss_pred Ccccccc--cChhhhcCCCcCcEEeccccCC
Q 048789 469 YTYGVLK--IPPKVISNLKILQTLRMYECAT 497 (724)
Q Consensus 469 ~~~~~~~--lp~~~i~~l~~L~~L~l~~~~~ 497 (724)
+|. +.. +|.. ++.+++|++|++++|..
T Consensus 99 ~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 99 FNA-FDALPICKE-FGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SSC-CSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred CCc-cccccchhh-hccCCcceEEEecCccc
Confidence 885 443 5555 88888888888887653
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=4.4e-17 Score=177.54 Aligned_cols=264 Identities=18% Similarity=0.224 Sum_probs=183.7
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-C--Cchh--hhccccCCeeecCCCCcccc-chH-Hhccc
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-P--LLFE--ISKVVSLQHLDLSHSRIERL-PIE-FKYLV 460 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~--lp~~--i~~L~~L~~L~L~~~~i~~L-p~~-i~~L~ 460 (724)
+..+++|++|++++|.+....+..|..+++|++|++++|. . .|.. +..+++|++|++++|.+..+ |.. +.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 4668899999999999888888889999999999999998 2 3555 88999999999999998876 555 88999
Q ss_pred cCcEeecCCcccccccChhhhcCC----------------------------------CcCcEEeccccCCCcccccccc
Q 048789 461 NLKCLNLEYTYGVLKIPPKVISNL----------------------------------KILQTLRMYECATVPQARDSIL 506 (724)
Q Consensus 461 ~L~~L~l~~~~~~~~lp~~~i~~l----------------------------------~~L~~L~l~~~~~~~~~~~~~~ 506 (724)
+|++|++++|. +..++...+..+ ++|++|++++|......+..+.
T Consensus 155 ~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 155 RFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred cccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 99999999985 444433224433 5677777776643321111000
Q ss_pred cC----C---------------------cccchHHhh--cCCCCCeEEEEEcchhhh-HHHhccccccccccCcEEeecc
Q 048789 507 FG----D---------------------CRVLVEELL--CLEHLSVFTITLNNFHAL-QRLLDSCMLQYVSTPSLCLSHF 558 (724)
Q Consensus 507 ~~----~---------------------~~~~~~~L~--~L~~L~~L~i~~~~~~~~-~~~~~~~~l~~~~L~~L~l~~~ 558 (724)
.. . .......+. ...+|+.|+++.+.+... +..+.. ..+|+.|+++++
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~Ls~n 309 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----FTDLEQLTLAQN 309 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT----CTTCCEEECTTS
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc----CCCCCEEECCCC
Confidence 00 0 000000011 125788888877666543 111111 127889999875
Q ss_pred CCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCC
Q 048789 559 NNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENL 638 (724)
Q Consensus 559 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~ 638 (724)
. +.......+..+++|++|++++|.++++.|..+. .+++|+.|++++|. +..+.. ...
T Consensus 310 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~Ls~N~-l~~~~~------------~~~ 367 (455)
T 3v47_A 310 E-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE--------NLDKLEVLDLSYNH-IRALGD------------QSF 367 (455)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT--------TCTTCCEEECCSSC-CCEECT------------TTT
T ss_pred c-ccccChhHhcCcccCCEEECCCCccCCcChhHhc--------CcccCCEEECCCCc-ccccCh------------hhc
Confidence 4 4455555788899999999999999887666664 57899999999885 232211 245
Q ss_pred CcccccceeccccccccccccCCC-CCCCCccEEeecCCCCC
Q 048789 639 IPFARLERLILEELKNLKTIHSKA-LPFPCLKEMSVDGCPLL 679 (724)
Q Consensus 639 ~~fp~L~~L~l~~~~~L~~~~~~~-~~~p~L~~L~i~~C~~L 679 (724)
..+++|++|+|++ .+++.++... ..+++|+.|.+++++--
T Consensus 368 ~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 368 LGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcc
Confidence 6789999999998 5777776643 57899999999887543
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=5.4e-17 Score=181.39 Aligned_cols=108 Identities=25% Similarity=0.303 Sum_probs=62.5
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccc--cchHHhccccCc
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIER--LPIEFKYLVNLK 463 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~--Lp~~i~~L~~L~ 463 (724)
..+++|++|++++|.+...++..|..+++|++|+++++. .+|. .++++++|++|++++|.+.. .|..++++++|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 445566666666666555555556666666666666665 3333 36666666666666665553 344556666666
Q ss_pred EeecCCcccccccChhhhcCCCcCcEEeccccC
Q 048789 464 CLNLEYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 464 ~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
+|++++|..+..+|...+..+++|++|++.+|.
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 666666544455554335666666666666554
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=3.3e-17 Score=168.32 Aligned_cols=224 Identities=20% Similarity=0.181 Sum_probs=155.2
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--C---CchhhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P---LLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~---lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
++|+.|++++|.+..+++..|..+++|++|+++++. . .|..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 678889999888888877778888899999998887 2 26677788889999999988888888888888999999
Q ss_pred cCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccc
Q 048789 467 LEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCML 545 (724)
Q Consensus 467 l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l 545 (724)
+++|. +..++. ..+..+++|++|++.+|.... .....+..+++|+.|+++.+.+..
T Consensus 108 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~---------- 164 (306)
T 2z66_A 108 FQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRV------------AFNGIFNGLSSLEVLKMAGNSFQE---------- 164 (306)
T ss_dssp CTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEE------------CSTTTTTTCTTCCEEECTTCEEGG----------
T ss_pred CCCCc-ccccccchhhhhccCCCEEECCCCcCCc------------cchhhcccCcCCCEEECCCCcccc----------
Confidence 98884 566654 347888889999888765321 112234455666666554333221
Q ss_pred cccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccC
Q 048789 546 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSE 625 (724)
Q Consensus 546 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~ 625 (724)
......+..+++|++|++++|.++++.|.++. .+++|+.|+++++. +..+..
T Consensus 165 -----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~L~~N~-l~~~~~-- 216 (306)
T 2z66_A 165 -----------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--------SLSSLQVLNMSHNN-FFSLDT-- 216 (306)
T ss_dssp -----------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECTTSC-CSBCCS--
T ss_pred -----------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhc--------CCCCCCEEECCCCc-cCccCh--
Confidence 01112466778899999998888876666664 46888888888774 222211
Q ss_pred CCCCcccccccCCCcccccceeccccccccccc-cCCCCCCC-CccEEeecCCC
Q 048789 626 KLSEVPAEVMENLIPFARLERLILEELKNLKTI-HSKALPFP-CLKEMSVDGCP 677 (724)
Q Consensus 626 ~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~-~~~~~~~p-~L~~L~i~~C~ 677 (724)
.....+++|++|+|+++ .++.. +.....+| +|+.|.+++++
T Consensus 217 ----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 217 ----------FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ----------GGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ----------hhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 12456788999999885 44443 33344554 78888887754
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=1.5e-17 Score=188.27 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=45.7
Q ss_pred CchhhhccccCCeeecCCCCccc------------------cchHHh--ccccCcEeecCCcccccccChhhhcCCCcCc
Q 048789 429 LLFEISKVVSLQHLDLSHSRIER------------------LPIEFK--YLVNLKCLNLEYTYGVLKIPPKVISNLKILQ 488 (724)
Q Consensus 429 lp~~i~~L~~L~~L~L~~~~i~~------------------Lp~~i~--~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~ 488 (724)
+|+.++++++|++|+|++|.+.. +|..++ ++++|++|++++|.....+|.. ++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCC
Confidence 55666677777777777776665 677666 7777777777776555566655 66777777
Q ss_pred EEeccccC
Q 048789 489 TLRMYECA 496 (724)
Q Consensus 489 ~L~l~~~~ 496 (724)
+|++.+|.
T Consensus 277 ~L~Ls~n~ 284 (636)
T 4eco_A 277 LINVACNR 284 (636)
T ss_dssp EEECTTCT
T ss_pred EEECcCCC
Confidence 77777665
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=6.9e-17 Score=187.29 Aligned_cols=272 Identities=18% Similarity=0.160 Sum_probs=140.5
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCcc-ccchHHhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~ 466 (724)
++.|+.|++++|.+....+..|..+++|++|++++|. .+|..++.+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 4556666666666555555556666666666666665 55666666666666666666555 5566666666666666
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccc-----------cCC-cccchHHhhcCCCCCeEEEEEcchh
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSIL-----------FGD-CRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~-----------~~~-~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
+++|.....+|.. +..+++|++|++.+|.....+|..+. ... .+..+..+..+++|+.|+++.+.+.
T Consensus 473 L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred ecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 6666433345544 56666666666665543322221110 000 1123345666677777776655443
Q ss_pred -hhHHHhcc-cccccccc----CcEEeecc------------------------------------CCCCcccccccccc
Q 048789 535 -ALQRLLDS-CMLQYVST----PSLCLSHF------------------------------------NNSKSLGVFSLASL 572 (724)
Q Consensus 535 -~~~~~~~~-~~l~~~~L----~~L~l~~~------------------------------------~~~~~~~~~~l~~~ 572 (724)
.++..... .......+ +...+... +.........+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 22211100 00000000 00000000 00000001134456
Q ss_pred cccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccc
Q 048789 573 RHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEEL 652 (724)
Q Consensus 573 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 652 (724)
++|+.|++++|.+++..|..++ .+++|+.|+|+++.-...+ | ...+.+++|+.|+|+++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~--------~l~~L~~L~Ls~N~l~g~i---------p----~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIG--------SMPYLFILNLGHNDISGSI---------P----DEVGDLRGLNILDLSSN 690 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGG--------GCTTCCEEECCSSCCCSCC---------C----GGGGGCTTCCEEECCSS
T ss_pred ccccEEECcCCcccccCCHHHh--------ccccCCEEeCcCCccCCCC---------C----hHHhCCCCCCEEECCCC
Confidence 7788888888887766676664 4667777777766422111 1 23455677777777774
Q ss_pred cccccccCCCCCCCCccEEeecCCCCCCCCCC
Q 048789 653 KNLKTIHSKALPFPCLKEMSVDGCPLLKKLPL 684 (724)
Q Consensus 653 ~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 684 (724)
.--..+|.....+++|+.|.+++++--..+|.
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 33335555555677777777777644334443
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=179.34 Aligned_cols=107 Identities=25% Similarity=0.303 Sum_probs=81.2
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccc--cchHHhccccC
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIER--LPIEFKYLVNL 462 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~--Lp~~i~~L~~L 462 (724)
+..+++|++|++++|.+...++..|..+++|++|+++++. .+|. .++++++|++|++++|.+.. +|..++++++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 4567888888888888888877788888888888888887 5554 58888888888888888774 68888888888
Q ss_pred cEeecCCcccccccChhhhcCCCcC----cEEecccc
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKIL----QTLRMYEC 495 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L----~~L~l~~~ 495 (724)
++|++++|. +..++...++.+++| ++|++.+|
T Consensus 152 ~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 152 EHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp CEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CEEeCcCCc-cceecHHHccchhccchhhhhcccCCC
Confidence 888888884 455554446666665 55665544
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=5.7e-16 Score=181.53 Aligned_cols=133 Identities=24% Similarity=0.228 Sum_probs=98.6
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CC-chhhhccccCCeeecCCCCcccc-chHHhccccCcE
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PL-LFEISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKC 464 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~l-p~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~ 464 (724)
..++|++|++++|.+....+..|.++++|++|+++++. .+ |..+++|++|++|+|++|.+..+ |..++++.+|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 44788899999888888777778888899999998885 34 67788888999999988888866 777888888999
Q ss_pred eecCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcch
Q 048789 465 LNLEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNF 533 (724)
Q Consensus 465 L~l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 533 (724)
|++++|.....+|. ..++++++|++|++++|..... .....++.+++|+.|+++.+.+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-----------~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-----------YLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-----------CCCGGGGTCSSCCEEEEESSCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCccccc-----------ccchhHhhCCCCCEEECCCCcC
Confidence 99888854333443 2377888888888887754321 1113456677777777776554
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=2.1e-16 Score=172.49 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=49.5
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEe
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCL 465 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 465 (724)
...+++|++|++++|.+...++ +..+++|++|++++|. .+|. +..+++|++|++++|.+..+|. ++.+.+|++|
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEe
Confidence 3456777777777777665554 6777777777777777 4443 7777777777777776666542 4444444444
Q ss_pred ec
Q 048789 466 NL 467 (724)
Q Consensus 466 ~l 467 (724)
++
T Consensus 162 ~l 163 (466)
T 1o6v_A 162 SF 163 (466)
T ss_dssp EE
T ss_pred ec
Confidence 44
No 41
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=5e-17 Score=188.48 Aligned_cols=269 Identities=20% Similarity=0.169 Sum_probs=172.0
Q ss_pred CCCcceEEEeecccccccChhhhhc-CCCceEEEccCCC---CCchhhhccccCCeeecCCCCcc-ccchH-HhccccCc
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQS-MASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIE-RLPIE-FKYLVNLK 463 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~-l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~-i~~L~~L~ 463 (724)
.+++|++|++++|.+....|..+.. +++|++|++++|. .+|..++.+++|++|++++|.+. .+|.. +..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 5677777777777766444443433 4777777777777 67777777777777777777776 67765 77777777
Q ss_pred EeecCCcccccccChhhhcCCC-cCcEEeccccCCCcccccccc-------------cCC-cccchHHhhcCCCCCeEEE
Q 048789 464 CLNLEYTYGVLKIPPKVISNLK-ILQTLRMYECATVPQARDSIL-------------FGD-CRVLVEELLCLEHLSVFTI 528 (724)
Q Consensus 464 ~L~l~~~~~~~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~-------------~~~-~~~~~~~L~~L~~L~~L~i 528 (724)
+|++++|.....+|.. +..++ +|++|++.+|.....++.... ... .......+..+++|+.|++
T Consensus 347 ~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 347 VLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp EEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred EEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 7777777544466665 66665 777777776643221111110 000 1123445677777777777
Q ss_pred EEcchhh-hHHHhccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCc
Q 048789 529 TLNNFHA-LQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNL 607 (724)
Q Consensus 529 ~~~~~~~-~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L 607 (724)
+.+.+.. .+..+... .+|+.|.++++.-.. .....+..+++|++|++++|.+.+..|.++. .+++|
T Consensus 426 s~N~l~~~~p~~l~~l----~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--------~l~~L 492 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSL----SKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLS--------NCTNL 492 (768)
T ss_dssp CSSEEESCCCGGGGGC----TTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTC
T ss_pred cCCcccCcccHHHhcC----CCCCEEECCCCcccC-cCCHHHcCCCCceEEEecCCcccCcCCHHHh--------cCCCC
Confidence 7665542 22221111 267777777654322 2223566778888888888777765666654 56888
Q ss_pred ceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCC
Q 048789 608 KRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLD 685 (724)
Q Consensus 608 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~ 685 (724)
+.|++++|.....+ | ...+.+++|++|+|+++.-...++.....+++|+.|.+++|+--..+|..
T Consensus 493 ~~L~L~~N~l~~~~---------p----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 493 NWISLSNNRLTGEI---------P----KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CEEECCSSCCCSCC---------C----GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CEEEccCCccCCcC---------C----hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 88988887632222 1 23556889999999987555566666677899999999988766666654
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=4.5e-16 Score=161.68 Aligned_cols=262 Identities=17% Similarity=0.206 Sum_probs=191.5
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCcccc-chHHhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l 467 (724)
.++++++++++.+..++... .+.|++|+++++. .+|. .++++++|++|++++|.+..+ |..++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 37899999998887766543 3689999999998 5554 799999999999999999977 788999999999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhH---HHhcccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQ---RLLDSCM 544 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~---~~~~~~~ 544 (724)
++|. +..+|.. + .++|++|++.+|.... .....+..+++|+.|+++.+.+.... ..+..
T Consensus 108 s~n~-l~~l~~~-~--~~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-- 169 (330)
T 1xku_A 108 SKNQ-LKELPEK-M--PKTLQELRVHENEITK------------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169 (330)
T ss_dssp CSSC-CSBCCSS-C--CTTCCEEECCSSCCCB------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG--
T ss_pred CCCc-CCccChh-h--cccccEEECCCCcccc------------cCHhHhcCCccccEEECCCCcCCccCcChhhccC--
Confidence 9994 7788876 3 3799999999875321 22345788999999999877664311 11111
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhcc
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISS 624 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~ 624 (724)
..+|+.|.++++. +..++. .-.++|++|++++|.++.+.|.++. .+++|+.|+++++. +..+..
T Consensus 170 --l~~L~~L~l~~n~-l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~Ls~n~-l~~~~~- 233 (330)
T 1xku_A 170 --MKKLSYIRIADTN-ITTIPQ---GLPPSLTELHLDGNKITKVDAASLK--------GLNNLAKLGLSFNS-ISAVDN- 233 (330)
T ss_dssp --CTTCCEEECCSSC-CCSCCS---SCCTTCSEEECTTSCCCEECTGGGT--------TCTTCCEEECCSSC-CCEECT-
T ss_pred --CCCcCEEECCCCc-cccCCc---cccccCCEEECCCCcCCccCHHHhc--------CCCCCCEEECCCCc-CceeCh-
Confidence 1278888888754 333322 1237999999999999876666654 57899999999875 222211
Q ss_pred CCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCCCC---------CCCCcceE
Q 048789 625 EKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLDCN---------RGLERKII 695 (724)
Q Consensus 625 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~---------~~l~~l~~ 695 (724)
.....+++|++|+|+++ .++.++.....+++|+.|.+++| .++.+|.... ..+..+.+
T Consensus 234 -----------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 234 -----------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp -----------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred -----------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 13456899999999995 77788777778999999999997 5777775432 13444555
Q ss_pred Eechhhhh
Q 048789 696 IKGQRRWW 703 (724)
Q Consensus 696 ~~~~~~~~ 703 (724)
...+-.+|
T Consensus 301 ~~N~~~~~ 308 (330)
T 1xku_A 301 FSNPVQYW 308 (330)
T ss_dssp CSSSSCGG
T ss_pred ecCccccc
Confidence 55554444
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=7.8e-17 Score=182.37 Aligned_cols=180 Identities=19% Similarity=0.086 Sum_probs=131.4
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCcccc-chHHhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~ 466 (724)
.+.+++|++++|.+...++..|.++++|++|+++++. ..|..++++++|++|+|++|.+..+ |..++++.+|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 3789999999999999988889999999999999998 3467899999999999999999987 78899999999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHH--Hhcccc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQR--LLDSCM 544 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~--~~~~~~ 544 (724)
+++|. +..+|+..++++++|++|++.+|.... ...+..++.+++|+.|+++.+.+..+.. +.....
T Consensus 111 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 111 AVETK-LASLESFPIGQLITLKKLNVAHNFIHS-----------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp CTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCC-----------CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred ccCCc-cccccccccCCCCCCCEEeCCCCcccc-----------eechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 99994 677775459999999999999876432 1234567889999999988776654311 111111
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCc
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDL 585 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 585 (724)
+.. .+..|.++++. +..+....+... +|++|++++|.+
T Consensus 179 L~~-~l~~L~l~~n~-l~~~~~~~~~~~-~L~~L~L~~n~~ 216 (606)
T 3vq2_A 179 NPQ-VNLSLDMSLNP-IDFIQDQAFQGI-KLHELTLRGNFN 216 (606)
T ss_dssp CTT-CCCEEECTTCC-CCEECTTTTTTC-EEEEEEEESCCS
T ss_pred ccc-ccceeeccCCC-cceeCcccccCc-eeeeeeccCCcc
Confidence 110 13355665532 333333233322 677777766543
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=1.1e-15 Score=171.07 Aligned_cols=103 Identities=26% Similarity=0.323 Sum_probs=84.9
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
++|++|++++|.+...++..|..+++|++|+++++. ..|..+.++++|++|++++|.++.+|.. .+.+|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 788999999998888888888899999999999888 3467788899999999999988888877 78899999998
Q ss_pred CcccccccCh-hhhcCCCcCcEEeccccCC
Q 048789 469 YTYGVLKIPP-KVISNLKILQTLRMYECAT 497 (724)
Q Consensus 469 ~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~ 497 (724)
+|. +..+|. ..++++++|++|++.+|..
T Consensus 130 ~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 130 FND-FDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp SSC-CSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCC-ccccCchHhhcccCcccEEecCCCcc
Confidence 884 555542 3388889999998887653
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=3.9e-16 Score=179.13 Aligned_cols=131 Identities=22% Similarity=0.266 Sum_probs=101.7
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccch-HHhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l 467 (724)
+++++|++++|.+...++..|.++++|++|+++++. ..|..++++++|++|+|++|.+..+|. .++++.+|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 688999999998888888888899999999999887 456778889999999999998888887 4888999999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhh
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHA 535 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~ 535 (724)
++|. +..+|+..++++++|++|++.+|..... ....+..+++|+.|+++.+.+..
T Consensus 105 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 105 MSNS-IQKIKNNPFVKQKNLITLDLSHNGLSST------------KLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCC------------CCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCc-cCccChhHccccCCCCEEECCCCccccc------------CchhhcccccCCEEEccCCcccc
Confidence 9884 5677765588899999999987754321 11224556677777766655543
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=1.6e-16 Score=177.47 Aligned_cols=164 Identities=26% Similarity=0.226 Sum_probs=118.2
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchH-HhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
.+.|++|++++|.+...++..|..+++|++|+++++. ..|..++.+++|++|++++|.+..+|.. ++.+.+|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 3789999999999988888889999999999999998 4557899999999999999999988876 99999999999
Q ss_pred cCCcccccc--cChhhhcCCCcCcEEeccccCCCcccccc-c-----------ccCC-cccchHHhhcCCCCCeEEEEEc
Q 048789 467 LEYTYGVLK--IPPKVISNLKILQTLRMYECATVPQARDS-I-----------LFGD-CRVLVEELLCLEHLSVFTITLN 531 (724)
Q Consensus 467 l~~~~~~~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~-~-----------~~~~-~~~~~~~L~~L~~L~~L~i~~~ 531 (724)
+++|. +.. .|.. ++.+++|++|++.+|.....++.. + .... .......+..+++|+.|++..+
T Consensus 105 Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCc-ccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 99995 453 4544 899999999999988754433311 0 0000 1112334555556666666655
Q ss_pred chhhhHHHhccccccccccCcEEeeccC
Q 048789 532 NFHALQRLLDSCMLQYVSTPSLCLSHFN 559 (724)
Q Consensus 532 ~~~~~~~~~~~~~l~~~~L~~L~l~~~~ 559 (724)
....++...... ..+|+.|.++++.
T Consensus 183 ~~~~~~~~~~~~---l~~L~~L~L~~n~ 207 (549)
T 2z81_A 183 ESAFLLEIFADI---LSSVRYLELRDTN 207 (549)
T ss_dssp BSTTHHHHHHHS---TTTBSEEEEESCB
T ss_pred cccccchhhHhh---cccccEEEccCCc
Confidence 554444332110 1267777777643
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=7e-16 Score=177.02 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=93.7
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccc-hHHhccccCc
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLP-IEFKYLVNLK 463 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~ 463 (724)
+..+++|++|++++|.+....+..|.++++|++|+++++. .+|. .++++++|++|++++|.+..+| ..++++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 3567899999999999988888889999999999999998 7776 5899999999999999998887 5689999999
Q ss_pred EeecCCcccccccChhhhcCCCcCcEEeccccCC
Q 048789 464 CLNLEYTYGVLKIPPKVISNLKILQTLRMYECAT 497 (724)
Q Consensus 464 ~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~ 497 (724)
+|++++|. +...+...++++++|++|++.+|..
T Consensus 125 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 125 TLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp EEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred EEECCCCc-ccccCchhhcccccCCEEEccCCcc
Confidence 99999995 4555544488999999999998754
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=178.38 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=93.2
Q ss_pred CCCCCCcceEEEeeccc-ccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccc-cchH--Hhcc
Q 048789 387 ESPVCPRLRTLFLSSNI-FHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIER-LPIE--FKYL 459 (724)
Q Consensus 387 ~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~--i~~L 459 (724)
.+..+++|++|++++|. ...+.+..|.++++|++|+|++|. ..|+.++++++|++|+|++|.+.. +|.. ++++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 45778999999999995 555667789999999999999998 468899999999999999998874 5665 8999
Q ss_pred ccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCC
Q 048789 460 VNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATV 498 (724)
Q Consensus 460 ~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 498 (724)
++|++|++++|......|...++++++|++|++.+|...
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999999999996433333334899999999999987643
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=1.4e-15 Score=170.17 Aligned_cols=105 Identities=25% Similarity=0.293 Sum_probs=90.0
Q ss_pred CCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccc--hHHhccccC
Q 048789 387 ESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLP--IEFKYLVNL 462 (724)
Q Consensus 387 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp--~~i~~L~~L 462 (724)
.+..+++|++|++++|.+....+..|..+++|++|+++++. .+|.. .+++|++|++++|.+..+| ..++++++|
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 34678999999999999999988889999999999999999 77776 8999999999999998765 789999999
Q ss_pred cEeecCCcccccccChhhhcCCCcC--cEEeccccCC
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKIL--QTLRMYECAT 497 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L--~~L~l~~~~~ 497 (724)
++|++++|. +...+ +..+++| ++|++.+|..
T Consensus 149 ~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 149 TFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 999999985 44322 5566666 9999988765
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=3.9e-15 Score=165.03 Aligned_cols=122 Identities=22% Similarity=0.216 Sum_probs=98.8
Q ss_pred eEEEeecccccccChhhhhcCCCceEEEccCCC--CC-chhhhccccCCeeecCCCCcccc-chHHhccccCcEeecCCc
Q 048789 395 RTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PL-LFEISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKCLNLEYT 470 (724)
Q Consensus 395 r~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l-p~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~~ 470 (724)
++|++++|.++.++...+ ++|++|+++++. .+ |..+.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999999887776543 899999999999 44 46899999999999999999977 678999999999999999
Q ss_pred ccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 471 YGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 471 ~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
.+..+|.. .+++|++|++++|.... ...+..++.+++|+.|+++.+.+.
T Consensus 80 -~l~~lp~~---~l~~L~~L~L~~N~l~~-----------~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 80 -KLVKISCH---PTVNLKHLDLSFNAFDA-----------LPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp -CCCEEECC---CCCCCSEEECCSSCCSS-----------CCCCGGGGGCTTCCEEEEEESSCC
T ss_pred -ceeecCcc---ccCCccEEeccCCcccc-----------ccchhhhccCCcceEEEecCcccc
Confidence 46788874 89999999999886432 012245666777777777766654
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=1.1e-15 Score=158.98 Aligned_cols=250 Identities=19% Similarity=0.191 Sum_probs=174.3
Q ss_pred CCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchH-HhccccCc
Q 048789 387 ESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLK 463 (724)
Q Consensus 387 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~ 463 (724)
.+..+++|++|++++|.+....+..|..+++|++|+++++. .+|..+. ++|++|++++|.+..+|.. +..+++|+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 35678999999999999988888889999999999999998 7887776 8999999999999988865 88999999
Q ss_pred EeecCCcccccc--cChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHH-Hh
Q 048789 464 CLNLEYTYGVLK--IPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQR-LL 540 (724)
Q Consensus 464 ~L~l~~~~~~~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~-~~ 540 (724)
+|++++|. +.. .+...+..+ +|++|++.+|.... +|.. + .++|+.|+++.+.+..+.. .+
T Consensus 151 ~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~------------~--~~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 151 CIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKD------------L--PETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp EEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSS------------S--CSSCSCCBCCSSCCCCCCTTSS
T ss_pred EEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCc-cCcc------------c--cCCCCEEECCCCcCCccCHHHh
Confidence 99999995 432 333337777 99999999875322 2211 1 1567777777766654321 11
Q ss_pred ccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhh
Q 048789 541 DSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEE 620 (724)
Q Consensus 541 ~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~ 620 (724)
. ...+|+.|.++++ .+.......+..+++|++|++++|.++.+ |.++. .+++|+.|+++++. +..
T Consensus 214 ~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~--------~l~~L~~L~l~~N~-l~~ 278 (332)
T 2ft3_A 214 L----RYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLP--------DLKLLQVVYLHTNN-ITK 278 (332)
T ss_dssp T----TCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTGG--------GCTTCCEEECCSSC-CCB
T ss_pred c----CCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeec-Chhhh--------cCccCCEEECCCCC-CCc
Confidence 1 1126788888875 34445444678899999999999998864 55543 57899999999875 444
Q ss_pred hhccCCCCCcccccccCCCcccccceeccccccccccccCC---CCCCCCccEEeecCCC
Q 048789 621 IISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSK---ALPFPCLKEMSVDGCP 677 (724)
Q Consensus 621 l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~---~~~~p~L~~L~i~~C~ 677 (724)
+........ .....+++|+.|.+.+.+ +..+... ...+++|+.+.++++.
T Consensus 279 ~~~~~~~~~------~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 279 VGVNDFCPV------GFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTSSSCS------SCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhHcccc------ccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 322111110 012237889999999865 4433332 2345667777777664
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=9.8e-16 Score=165.80 Aligned_cols=203 Identities=19% Similarity=0.238 Sum_probs=165.5
Q ss_pred CCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccch-HHhccccC
Q 048789 387 ESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPI-EFKYLVNL 462 (724)
Q Consensus 387 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L 462 (724)
.+..+++|++|++++|.+..+.+..|..+++|++|+|++|. .+|. .+..+++|++|+|++|.+..+|. .+..+.+|
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 45678999999999999999988899999999999999998 6665 68999999999999999998876 58899999
Q ss_pred cEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhH-HHhc
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQ-RLLD 541 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~-~~~~ 541 (724)
++|++++|+.+..+|...+..+++|++|++.+|... . +..+..+++|+.|+++.+.+..+. ..+.
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 228 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E-------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S-------------CCCCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c-------------ccccCCCcccCEEECCCCccCccChhhhc
Confidence 999999987888899877999999999999987532 1 123677889999999887776542 1111
Q ss_pred cccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 542 SCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 542 ~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
. ..+|+.|.+.++ .+..+....+..+++|+.|+|++|.++.+.+..+. .+++|+.|+|++++
T Consensus 229 ~----l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 G----LMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT--------PLHHLERIHLHHNP 290 (440)
T ss_dssp T----CTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS--------SCTTCCEEECCSSC
T ss_pred c----CccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc--------cccCCCEEEcCCCC
Confidence 1 127888888874 45556556788899999999999999886555554 57899999998765
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=1.2e-15 Score=165.71 Aligned_cols=203 Identities=20% Similarity=0.189 Sum_probs=164.8
Q ss_pred CCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccch-HHhccccC
Q 048789 387 ESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPI-EFKYLVNL 462 (724)
Q Consensus 387 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L 462 (724)
.+..+++|+.|++++|.+....+..|..+++|++|+|++|. .+|. .+..+++|++|+|++|.+..+|. .+.++.+|
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 35678999999999999999988889999999999999998 5655 48889999999999999998876 58899999
Q ss_pred cEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhH-HHhc
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQ-RLLD 541 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~-~~~~ 541 (724)
++|++++|+.+..+|.+.+..+++|++|++.+|.... +..+..+.+|+.|+++.+.+..+. ..+.
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--------------MPNLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--------------CCCCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--------------cccccccccccEEECcCCcCcccCccccc
Confidence 9999999888899998779999999999999875321 123677889999999887776542 2222
Q ss_pred cccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 542 SCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 542 ~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
.. .+|+.|.++++ .+..+....+..+++|+.|+|++|.++.+.+..+. .+++|+.|+|++++
T Consensus 240 ~l----~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GL----SSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT--------PLRYLVELHLHHNP 301 (452)
T ss_dssp TC----TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST--------TCTTCCEEECCSSC
T ss_pred Cc----cCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccChHHhc--------cccCCCEEEccCCC
Confidence 11 27888888875 35555555788899999999999999876555553 57899999998765
No 54
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.61 E-value=1.6e-15 Score=128.22 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=74.9
Q ss_pred cchhhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHHHH
Q 048789 9 FSCDDSVSHCLDCSVRKAGYICHLQDNLDALQRELQMLIEERNDVRVRVIVAEQQQ-MKRLERVQGWLSRVEKVESRVGK 87 (724)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~-~~~~~~~~~Wl~~lr~~~yd~ed 87 (724)
|+++.+++||.+++.+|+.++.+++++++.|+++|++|+++|.| |+.+. ...+++++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999998 66652 23468999999999999999999
Q ss_pred HHhhChhhhhh
Q 048789 88 LIRKSPQQVEK 98 (724)
Q Consensus 88 ~ld~~~~~~~~ 98 (724)
|+|+|.++...
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999998864
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=2.9e-15 Score=162.10 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=133.1
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEe
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCL 465 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 465 (724)
...+++|++|++++|.+...+ +..+++|++|+++++. .+| ++.+++|++|++++|.++.+| ++.+++|++|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L 153 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTEL 153 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEE
T ss_pred cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEE
Confidence 456789999999999987763 7899999999999999 665 899999999999999999885 8899999999
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCML 545 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l 545 (724)
++++|..+..++ ++.+++|++|++.+|.... + .+..+++|+.|.++.+.+..++ + .
T Consensus 154 ~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-l--------------~l~~l~~L~~L~l~~N~l~~~~-l---~-- 209 (457)
T 3bz5_A 154 DCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-L--------------DVSQNKLLNRLNCDTNNITKLD-L---N-- 209 (457)
T ss_dssp ECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-C--------------CCTTCTTCCEEECCSSCCSCCC-C---T--
T ss_pred ECCCCCcccccc---cccCCcCCEEECCCCccce-e--------------ccccCCCCCEEECcCCcCCeec-c---c--
Confidence 999997666664 7889999999999875321 1 1566788888888877766542 1 1
Q ss_pred cccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCC
Q 048789 546 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGG 594 (724)
Q Consensus 546 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 594 (724)
...+|+.|+++++. +..++ +..+++|+.|++++|.++++++..+.
T Consensus 210 ~l~~L~~L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 210 QNIQLTFLDCSSNK-LTEID---VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp TCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred cCCCCCEEECcCCc-ccccC---ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 11268888888754 33332 66788899999998888876444443
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=2.4e-16 Score=162.59 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=150.5
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeec
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNL 467 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 467 (724)
.+++|+.|++++|.+...++..|..+++|++|++++|. ..++ +..+++|++|++++|.+..+|. +.+|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 35789999999999988888889999999999999998 4443 8899999999999999887763 378888888
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhH--HHhccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQ--RLLDSCML 545 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~--~~~~~~~l 545 (724)
++|. +..++. ..+++|++|++.+|..... ....+..+++|+.|+++.+.+..+. .+...
T Consensus 107 ~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--- 167 (317)
T 3o53_A 107 ANNN-ISRVSC---SRGQGKKNIYLANNKITML------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS--- 167 (317)
T ss_dssp CSSC-CSEEEE---CCCSSCEEEECCSSCCCSG------------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG---
T ss_pred CCCc-cCCcCc---cccCCCCEEECCCCCCCCc------------cchhhhccCCCCEEECCCCCCCcccHHHHhhc---
Confidence 8874 555553 3467788888877653221 1112345566667766655554321 11111
Q ss_pred cccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccC
Q 048789 546 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSE 625 (724)
Q Consensus 546 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~ 625 (724)
..+|+.|.++++. +..+. ....+++|++|++++|.++.+++ .+. .+++|+.|+++++. +..+.
T Consensus 168 -l~~L~~L~L~~N~-l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~--------~l~~L~~L~L~~N~-l~~l~--- 230 (317)
T 3o53_A 168 -SDTLEHLNLQYNF-IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQ--------SAAGVTWISLRNNK-LVLIE--- 230 (317)
T ss_dssp -TTTCCEEECTTSC-CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGG--------GGTTCSEEECTTSC-CCEEC---
T ss_pred -cCcCCEEECCCCc-Ccccc--cccccccCCEEECCCCcCCcchh-hhc--------ccCcccEEECcCCc-ccchh---
Confidence 1156667766643 22222 23346677777777777766433 232 35667777776653 22221
Q ss_pred CCCCcccccccCCCcccccceecccccccc-ccccCCCCCCCCccEEeecCCCCCCCC
Q 048789 626 KLSEVPAEVMENLIPFARLERLILEELKNL-KTIHSKALPFPCLKEMSVDGCPLLKKL 682 (724)
Q Consensus 626 ~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L-~~~~~~~~~~p~L~~L~i~~C~~L~~l 682 (724)
.....+++|+.|++++.+-- ..++.....++.|+.+.+.+|+.++..
T Consensus 231 ----------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 231 ----------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ----------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ----------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 12345667777777664322 122222334566666666655555543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=1.8e-15 Score=153.54 Aligned_cols=200 Identities=20% Similarity=0.225 Sum_probs=142.7
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCC-cccc-chHHhccccCcEe
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSR-IERL-PIEFKYLVNLKCL 465 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~-i~~L-p~~i~~L~~L~~L 465 (724)
.+.|+.|++++|.+...++..|..+++|++|+++++. ..|..+..+++|++|++++|. +..+ |..+..+.+|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4688999999998888888888999999999999887 347788889999999999986 8877 6678889999999
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHH-hcccc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRL-LDSCM 544 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~-~~~~~ 544 (724)
++++|. +..+++..+..+++|++|++.+|.... .....+..+++|+.|+++.+.+..++.. +..
T Consensus 111 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 175 (285)
T 1ozn_A 111 HLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA------------LPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-- 175 (285)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCEECTTTTTT--
T ss_pred ECCCCc-CCEECHhHhhCCcCCCEEECCCCcccc------------cCHhHhccCCCccEEECCCCcccccCHHHhcC--
Confidence 999885 566655558889999999998775321 1112356678888888877766544321 111
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
..+|+.|.++++. +.......+..+++|+.|++++|.++.+.+..+. .+++|+.|++++++
T Consensus 176 --l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 --LHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA--------PLRALQYLRLNDNP 236 (285)
T ss_dssp --CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT--------TCTTCCEEECCSSC
T ss_pred --ccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcc--------cCcccCEEeccCCC
Confidence 1256777776643 3444344566677778888877777665444333 46777777777654
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=3.9e-15 Score=151.06 Aligned_cols=218 Identities=18% Similarity=0.181 Sum_probs=143.8
Q ss_pred eEEEeecccccccChhhhhcCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCCcccc-chHHhccccCcEeecCCc
Q 048789 395 RTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKCLNLEYT 470 (724)
Q Consensus 395 r~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~~ 470 (724)
++++..++.+..++.. -.++|++|+++++. .+| ..+..+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5778888777776643 25689999999998 444 5689999999999999999877 678999999999999999
Q ss_pred ccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccccccccc
Q 048789 471 YGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVST 550 (724)
Q Consensus 471 ~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L 550 (724)
..+..+++..+..+++|++|++.+|.... .....+..+++|+.|+++.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~-------------- 144 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQE------------LGPGLFRGLAALQYLYLQDNALQAL-------------- 144 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCC--------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCE------------ECHhHhhCCcCCCEEECCCCccccc--------------
Confidence 65777765558999999999999875322 1123356677777777665544322
Q ss_pred CcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCc
Q 048789 551 PSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEV 630 (724)
Q Consensus 551 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 630 (724)
....+..+++|++|++++|.++.+.+.++. .+++|+.|+++++. +..+..
T Consensus 145 --------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~l~~n~-l~~~~~------- 194 (285)
T 1ozn_A 145 --------------PDDTFRDLGNLTHLFLHGNRISSVPERAFR--------GLHSLDRLLLHQNR-VAHVHP------- 194 (285)
T ss_dssp --------------CTTTTTTCTTCCEEECCSSCCCEECTTTTT--------TCTTCCEEECCSSC-CCEECT-------
T ss_pred --------------CHhHhccCCCccEEECCCCcccccCHHHhc--------CccccCEEECCCCc-ccccCH-------
Confidence 112355566677777777666654333343 35666677666653 121111
Q ss_pred ccccccCCCcccccceeccccccccccccCC-CCCCCCccEEeecCCC
Q 048789 631 PAEVMENLIPFARLERLILEELKNLKTIHSK-ALPFPCLKEMSVDGCP 677 (724)
Q Consensus 631 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~-~~~~p~L~~L~i~~C~ 677 (724)
.....+++|+.|+++++ +++.++.. ...+++|+.|.+++++
T Consensus 195 -----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 195 -----HAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred -----hHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 13445667777777663 44444321 2345666666666543
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=3.6e-15 Score=162.91 Aligned_cols=235 Identities=16% Similarity=0.131 Sum_probs=154.8
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
..+++|+.|++++|.+...++..|..+++|++|+|++|. ..++ ++.+++|++|+|++|.+..+|. .++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 345789999999999988888889999999999999998 3443 8899999999999999988774 38899999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhH--HHhcccc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQ--RLLDSCM 544 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~--~~~~~~~ 544 (724)
+++|. +..+|. ..+++|++|++.+|..... ....+..+++|+.|+++.+.+.... .+...
T Consensus 106 L~~N~-l~~~~~---~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~-- 167 (487)
T 3oja_A 106 AANNN-ISRVSC---SRGQGKKNIYLANNKITML------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-- 167 (487)
T ss_dssp CCSSC-CCCEEE---CCCSSCEEEECCSSCCCSG------------GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG--
T ss_pred CcCCc-CCCCCc---cccCCCCEEECCCCCCCCC------------CchhhcCCCCCCEEECCCCCCCCcChHHHhhh--
Confidence 99984 566664 3578899999998764321 1223456777888887766655421 11111
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhcc
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISS 624 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~ 624 (724)
..+|+.|+++++. +...+ ....+++|+.|++++|.+++++|. +. .+++|+.|+++++. +..+.
T Consensus 168 --l~~L~~L~Ls~N~-l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~--------~l~~L~~L~Ls~N~-l~~lp-- 230 (487)
T 3oja_A 168 --SDTLEHLNLQYNF-IYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQ--------SAAGVTWISLRNNK-LVLIE-- 230 (487)
T ss_dssp --TTTCCEEECTTSC-CCEEE--CCCCCTTCCEEECCSSCCCEECGG-GG--------GGTTCSEEECTTSC-CCEEC--
T ss_pred --CCcccEEecCCCc-ccccc--ccccCCCCCEEECCCCCCCCCCHh-Hc--------CCCCccEEEecCCc-Ccccc--
Confidence 1266777776654 22222 334567777777777777764333 32 45777777777654 22221
Q ss_pred CCCCCcccccccCCCcccccceecccccccc-ccccCCCCCCCCccEEeec
Q 048789 625 EKLSEVPAEVMENLIPFARLERLILEELKNL-KTIHSKALPFPCLKEMSVD 674 (724)
Q Consensus 625 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L-~~~~~~~~~~p~L~~L~i~ 674 (724)
.....+++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 231 -----------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 -----------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -----------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 13445677777777764433 1222223345666666554
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=1e-15 Score=157.44 Aligned_cols=222 Identities=18% Similarity=0.170 Sum_probs=127.4
Q ss_pred ceEEEeecccccc-cChhhhh-------cCCCceEEEccCCC---CCchhh--hccccCCeeecCCCCccccchHHhcc-
Q 048789 394 LRTLFLSSNIFHR-VNSDFFQ-------SMASLRVLKLSYSN---PLLFEI--SKVVSLQHLDLSHSRIERLPIEFKYL- 459 (724)
Q Consensus 394 Lr~L~l~~~~~~~-~~~~~~~-------~l~~Lr~L~l~~~~---~lp~~i--~~L~~L~~L~L~~~~i~~Lp~~i~~L- 459 (724)
|+.|++++|.+.. ..+..+. .+++|++|+++++. .+|..+ ..+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 4555666665422 2222232 57788888888877 567665 77888888888888888777777776
Q ss_pred ----ccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHh--hcCCCCCeEEEEEcch
Q 048789 460 ----VNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEEL--LCLEHLSVFTITLNNF 533 (724)
Q Consensus 460 ----~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L--~~L~~L~~L~i~~~~~ 533 (724)
++|++|++++|. +..+|...++.+++|++|++++|..... ...+..+ ..+++|+.|+++.+.+
T Consensus 145 ~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE----------RGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp TTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH----------HHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred HhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc----------hHHHHHHHhccCCCCCEEECCCCcC
Confidence 788888888874 5666654478888888888887653221 0112223 5566677666665555
Q ss_pred hhhHHHhccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEe
Q 048789 534 HALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIE 613 (724)
Q Consensus 534 ~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~ 613 (724)
..++..... .+..+++|++|++++|.+++..|.... ..+++|+.|+++
T Consensus 214 ~~~~~~~~~-------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~l~~L~~L~Ls 261 (312)
T 1wwl_A 214 ETPSGVCSA-------------------------LAAARVQLQGLDLSHNSLRDAAGAPSC-------DWPSQLNSLNLS 261 (312)
T ss_dssp CCHHHHHHH-------------------------HHHTTCCCSEEECTTSCCCSSCCCSCC-------CCCTTCCEEECT
T ss_pred cchHHHHHH-------------------------HHhcCCCCCEEECCCCcCCcccchhhh-------hhcCCCCEEECC
Confidence 433221110 123345666666666655543221110 124566666666
Q ss_pred cCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCC
Q 048789 614 NCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGC 676 (724)
Q Consensus 614 ~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C 676 (724)
++. ++.+ | ...+++|++|++++ .+++.++. ...+++|+.|.+++.
T Consensus 262 ~N~-l~~i---------p------~~~~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 262 FTG-LKQV---------P------KGLPAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp TSC-CSSC---------C------SSCCSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred CCc-cChh---------h------hhccCCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC
Confidence 553 1111 1 01125666666666 35555543 445666666666554
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=156.09 Aligned_cols=157 Identities=24% Similarity=0.275 Sum_probs=127.4
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hhccccCCeeecCCCCccccch--HHhccccC
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-ISKVVSLQHLDLSHSRIERLPI--EFKYLVNL 462 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~~L~~L~~L~L~~~~i~~Lp~--~i~~L~~L 462 (724)
...+++|++|++++|.+....+..|..+++|++|+++++. .+|.. ++.+++|++|++++|.+..+|. .+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 5678999999999999988888889999999999999998 77765 8999999999999999999987 68899999
Q ss_pred cEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcc
Q 048789 463 KCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDS 542 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~ 542 (724)
++|++++|..+..++...+..+++|++|++.+|.... .....+..+++|+.|+++.+.+..++.....
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS------------YEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc------------cCHHHHhccccCCeecCCCCccccchhhhhh
Confidence 9999999866777776668999999999999875432 1234567788888999988887766643221
Q ss_pred ccccccccCcEEeeccC
Q 048789 543 CMLQYVSTPSLCLSHFN 559 (724)
Q Consensus 543 ~~l~~~~L~~L~l~~~~ 559 (724)
. ..+|+.|.++++.
T Consensus 220 ~---~~~L~~L~L~~n~ 233 (353)
T 2z80_A 220 V---TSSVECLELRDTD 233 (353)
T ss_dssp H---TTTEEEEEEESCB
T ss_pred h---cccccEEECCCCc
Confidence 0 1167778887653
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=4.3e-15 Score=153.14 Aligned_cols=235 Identities=17% Similarity=0.128 Sum_probs=167.6
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccchHHhccccCcEeecCC
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 469 (724)
.+..+++..+.+...+...+..+++|++|+++++. . .|..+..+++|++|+|++|.+...+. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 45556666666666666777888899999999999 4 45789999999999999999987765 89999999999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVS 549 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 549 (724)
|. +..+| .+++|++|++.+|..... + ...+++|+.|+++.+.+..++...- ....+
T Consensus 90 n~-l~~l~-----~~~~L~~L~l~~n~l~~~-~--------------~~~~~~L~~L~l~~N~l~~~~~~~~---~~l~~ 145 (317)
T 3o53_A 90 NY-VQELL-----VGPSIETLHAANNNISRV-S--------------CSRGQGKKNIYLANNKITMLRDLDE---GCRSR 145 (317)
T ss_dssp SE-EEEEE-----ECTTCCEEECCSSCCSEE-E--------------ECCCSSCEEEECCSSCCCSGGGBCT---GGGSS
T ss_pred Cc-ccccc-----CCCCcCEEECCCCccCCc-C--------------ccccCCCCEEECCCCCCCCccchhh---hccCC
Confidence 94 55554 458999999998754321 1 1235678888888777765432110 01126
Q ss_pred cCcEEeeccCCCCccccccc-ccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCC
Q 048789 550 TPSLCLSHFNNSKSLGVFSL-ASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLS 628 (724)
Q Consensus 550 L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 628 (724)
|+.|+++++. +.......+ ..+++|++|++++|.++.+ +... .+++|+.|+++++. +..+.
T Consensus 146 L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~---------~l~~L~~L~Ls~N~-l~~l~------ 207 (317)
T 3o53_A 146 VQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQV---------VFAKLKTLDLSSNK-LAFMG------ 207 (317)
T ss_dssp EEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCC---------CCTTCCEEECCSSC-CCEEC------
T ss_pred CCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc-cccc---------ccccCCEEECCCCc-CCcch------
Confidence 7788887753 444433334 3678899999999888875 3332 37889999998874 22221
Q ss_pred CcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCC
Q 048789 629 EVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPL 678 (724)
Q Consensus 629 ~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~ 678 (724)
.....+++|+.|+++++ .++.++.....+++|+.|.+++++-
T Consensus 208 -------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 208 -------PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp -------GGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred -------hhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 12446789999999884 7777776666788888888888754
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=2.5e-14 Score=162.76 Aligned_cols=108 Identities=26% Similarity=0.270 Sum_probs=67.8
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccchH-HhccccCc
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPIE-FKYLVNLK 463 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~ 463 (724)
+..+++|++|++++|.+..++++.|.++++|++|+|++|. .+|. .+.+|.+|++|+|++|.++.+|.. +++|++|+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 3456666666666666666666666666667777776666 4443 456666677777776666666543 56666777
Q ss_pred EeecCCcccccc--cChhhhcCCCcCcEEeccccCC
Q 048789 464 CLNLEYTYGVLK--IPPKVISNLKILQTLRMYECAT 497 (724)
Q Consensus 464 ~L~l~~~~~~~~--lp~~~i~~l~~L~~L~l~~~~~ 497 (724)
+|++++|. +.. +|.. ++.+++|++|++.+|..
T Consensus 152 ~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 152 ELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred eeccccCc-cccCCCchh-hccchhhhhhcccCccc
Confidence 77776663 332 3433 66677777777766543
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=8.7e-15 Score=144.26 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=134.4
Q ss_pred CceEEEccCCC--CCch-hhhccccCCeeecCCCC-ccccch-HHhccccCcEeecCCcccccccChhhhcCCCcCcEEe
Q 048789 417 SLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSR-IERLPI-EFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLR 491 (724)
Q Consensus 417 ~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~-i~~Lp~-~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~ 491 (724)
.|++|+++++. .+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|+.+..+|...+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67888888887 4444 67778888888888885 777765 5677888888888873356777765577788888888
Q ss_pred ccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccccccccc
Q 048789 492 MYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLAS 571 (724)
Q Consensus 492 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~ 571 (724)
+.+|.... +| .+..+.+|+ .|+.|.++++..+..++...+..
T Consensus 112 l~~n~l~~-lp-------------~~~~l~~L~------------------------~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 112 IFNTGLKM-FP-------------DLTKVYSTD------------------------IFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EEEECCCS-CC-------------CCTTCCBCC------------------------SEEEEEEESCTTCCEECTTTTTT
T ss_pred CCCCCCcc-cc-------------ccccccccc------------------------cccEEECCCCcchhhcCcccccc
Confidence 87664221 11 122333333 11244444432344444446778
Q ss_pred ccccc-eEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcc-cccceecc
Q 048789 572 LRHLQ-TLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPF-ARLERLIL 649 (724)
Q Consensus 572 ~~~L~-~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~f-p~L~~L~l 649 (724)
+++|+ +|++++|.++.+.+..+. .++|+.|+++++..++.+.. .....+ ++|+.|++
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~~---------~~~L~~L~L~~n~~l~~i~~------------~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAFN---------GTKLDAVYLNKNKYLTVIDK------------DAFGGVYSGPSLLDV 212 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTTT---------TCEEEEEECTTCTTCCEECT------------TTTTTCSBCCSEEEC
T ss_pred hhcceeEEEcCCCCCcccCHhhcC---------CCCCCEEEcCCCCCcccCCH------------HHhhccccCCcEEEC
Confidence 89999 999999988865333322 36899999998865555422 134456 89999999
Q ss_pred ccccccccccCCCCCCCCccEEeecCCCCC
Q 048789 650 EELKNLKTIHSKALPFPCLKEMSVDGCPLL 679 (724)
Q Consensus 650 ~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L 679 (724)
++ .+++.++.. .|++|+.|.+.+++.|
T Consensus 213 ~~-N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 213 SQ-TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp TT-CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred CC-CccccCChh--HhccCceeeccCccCC
Confidence 88 677777654 7999999999998764
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.56 E-value=1.3e-14 Score=161.86 Aligned_cols=153 Identities=19% Similarity=0.114 Sum_probs=93.7
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 469 (724)
++|+.|++++|.+..++. .+++|++|+|++|. .+|. .+++|++|++++|.+..+|. .+.+|++|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 677778887777665544 46777788887777 6665 66777888888777777776 567777788877
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVS 549 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 549 (724)
| .+..+|.. +++|++|++++|... .+| ..+.+|+.|.+..+.+..++. . ..+
T Consensus 131 N-~l~~lp~~----l~~L~~L~Ls~N~l~-~l~---------------~~~~~L~~L~L~~N~l~~l~~---~----~~~ 182 (622)
T 3g06_A 131 N-QLTSLPVL----PPGLQELSVSDNQLA-SLP---------------ALPSELCKLWAYNNQLTSLPM---L----PSG 182 (622)
T ss_dssp S-CCSCCCCC----CTTCCEEECCSSCCS-CCC---------------CCCTTCCEEECCSSCCSCCCC---C----CTT
T ss_pred C-CCCcCCCC----CCCCCEEECcCCcCC-CcC---------------CccCCCCEEECCCCCCCCCcc---c----CCC
Confidence 7 35667653 477788887766422 111 113456666666555554431 0 125
Q ss_pred cCcEEeeccCCCCcccccccccccccceEEeecCCcce
Q 048789 550 TPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEE 587 (724)
Q Consensus 550 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 587 (724)
|+.|.++++. +..++. .+++|+.|++++|.++.
T Consensus 183 L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 183 LQELSVSDNQ-LASLPT----LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp CCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSS
T ss_pred CcEEECCCCC-CCCCCC----ccchhhEEECcCCcccc
Confidence 6666666543 222211 23566666666666554
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=1.2e-14 Score=146.75 Aligned_cols=131 Identities=24% Similarity=0.191 Sum_probs=95.8
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CC-chhhhccccCCeeecCCCCccccc-hHHhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PL-LFEISKVVSLQHLDLSHSRIERLP-IEFKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l-p~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l 467 (724)
+.|++|++++|.+...++..|..+++|++|+++++. .+ +..+..+++|++|++++|.+..++ ..+..+.+|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468888888888887777778888888888888887 33 346788888888888888888766 45788888888888
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
++|. +..++...++.+++|++|++.+|.... ......+..+++|+.|+++.+.+.
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQS-----------FKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-----------CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCCccce-----------ecCchhhccCCCCCEEECCCCCCC
Confidence 8884 566665447888888888888765321 012334566677777766655443
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.54 E-value=5.9e-15 Score=151.47 Aligned_cols=204 Identities=24% Similarity=0.242 Sum_probs=148.3
Q ss_pred CCCCCcceEEEeecccccccC--hhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccch--HHhcccc
Q 048789 388 SPVCPRLRTLFLSSNIFHRVN--SDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPI--EFKYLVN 461 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~--~i~~L~~ 461 (724)
+..+++|++|++++|.+.... +..+..+++|++|+++++. .+|..+..+++|++|++++|.+..+|. .+..+.+
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 457899999999999876442 4556789999999999999 888889999999999999999998875 6899999
Q ss_pred CcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhH-HHh
Q 048789 462 LKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQ-RLL 540 (724)
Q Consensus 462 L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~-~~~ 540 (724)
|++|++++|. +...+...+..+++|++|++.+|.... ......+..+++|+.|+++.+.+..+. ..+
T Consensus 128 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 128 LIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp CCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG-----------GEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc-----------ccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 9999999995 455555558999999999999875321 012334667888888888776665431 111
Q ss_pred ccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCC-CCcceEEEecCc
Q 048789 541 DSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSA-PNLKRVEIENCQ 616 (724)
Q Consensus 541 ~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l-~~L~~L~l~~c~ 616 (724)
.. ..+|+.|.++++. +.......+..+++|+.|++++|.+.+..|..+. .+ ++|++|++++++
T Consensus 196 ~~----l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 196 NS----LSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--------HFPSSLAFLNLTQND 259 (306)
T ss_dssp TT----CTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC--------CCCTTCCEEECTTCC
T ss_pred cC----CCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHH--------hhhccCCEEEccCCC
Confidence 11 1267777776643 3344433566677888888888777765555543 23 377777777654
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=1.8e-14 Score=144.87 Aligned_cols=193 Identities=18% Similarity=0.153 Sum_probs=138.1
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchH-HhccccCcEee
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
..+++|+.|++.+|.+.... .+..+++|++|+++++. .-++.++.+++|++|++++|.+..+|.. +..+.+|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 44678999999998876543 37889999999999998 4445888999999999999999887765 68899999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccccc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQ 546 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~ 546 (724)
+++|. +..+|...++.+++|++|++.+|... .++ ...+..+++|+.|+++.+.+
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-----------~~~~~~l~~L~~L~l~~n~l------------- 169 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLP-----------KGVFDKLTNLTELDLSYNQL------------- 169 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCC-----------TTTTTTCTTCCEEECCSSCC-------------
T ss_pred CCCCc-CCccCHHHhccCCCCCEEECCCCccC-ccC-----------HHHhccCccCCEEECCCCCc-------------
Confidence 99984 67777766788999999999877432 111 11234555555555543332
Q ss_pred ccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCC
Q 048789 547 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEK 626 (724)
Q Consensus 547 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~ 626 (724)
..+....+..+++|++|++++|.++++.+..+. .+++|+.|++++++
T Consensus 170 ---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L~~L~l~~N~---------- 216 (272)
T 3rfs_A 170 ---------------QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD--------RLTSLQYIWLHDNP---------- 216 (272)
T ss_dssp ---------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--------TCTTCCEEECCSSC----------
T ss_pred ---------------CccCHHHhcCCccCCEEECCCCcCCccCHHHHh--------CCcCCCEEEccCCC----------
Confidence 222222466778899999998888876554443 46888888888764
Q ss_pred CCCcccccccCCCcccccceeccccc
Q 048789 627 LSEVPAEVMENLIPFARLERLILEEL 652 (724)
Q Consensus 627 ~~~~~~~~~~~~~~fp~L~~L~l~~~ 652 (724)
..+.+|+|+.|.+...
T Consensus 217 ----------~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 217 ----------WDCTCPGIRYLSEWIN 232 (272)
T ss_dssp ----------BCCCTTTTHHHHHHHH
T ss_pred ----------ccccCcHHHHHHHHHH
Confidence 1234677777777653
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=4e-14 Score=148.03 Aligned_cols=123 Identities=18% Similarity=0.151 Sum_probs=81.0
Q ss_pred ccCcEEeeccCCCCcccccccccc-cccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCC
Q 048789 549 STPSLCLSHFNNSKSLGVFSLASL-RHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKL 627 (724)
Q Consensus 549 ~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 627 (724)
.+..|.+..++.+..+....+..+ ..|+.|++++|.++.+.+..+. ..+|+.|.+.++..++.+..
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~---------~~~L~~l~l~~~n~l~~i~~---- 195 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN---------GTQLDELNLSDNNNLEELPN---- 195 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST---------TEEEEEEECTTCTTCCCCCT----
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc---------ccchhHHhhccCCcccCCCH----
Confidence 344555555555555554455544 3678899999888875443332 45678888877766666532
Q ss_pred CCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCCCCCCCCCCCcceEEe
Q 048789 628 SEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPLDCNRGLERKIIIK 697 (724)
Q Consensus 628 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~l~~~~ 697 (724)
.....+++|++|+|++ .+++.++. ..|.+|+.|.+.+|.+++.+|.-. .+..|....
T Consensus 196 --------~~f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~--~l~~L~~l~ 252 (350)
T 4ay9_X 196 --------DVFHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLE--KLVALMEAS 252 (350)
T ss_dssp --------TTTTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTT--TCCSCCEEE
T ss_pred --------HHhccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCch--hCcChhhCc
Confidence 1345678899999988 47887765 458889999998999999888422 244444444
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.53 E-value=2.7e-14 Score=159.31 Aligned_cols=215 Identities=19% Similarity=0.170 Sum_probs=159.5
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeec
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNL 467 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 467 (724)
.+++|++|++++|.++.++. .+++|++|++++|. .+|. .+.+|++|++++|.+..+|.. +++|++|++
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSV 148 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEEC
Confidence 56899999999999877655 67899999999998 7776 678999999999999999874 589999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQY 547 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 547 (724)
++| .+..+|. .+.+|+.|++.+|.... +| ..+++|+.|+++.+.+..++...
T Consensus 149 s~N-~l~~l~~----~~~~L~~L~L~~N~l~~-l~---------------~~~~~L~~L~Ls~N~l~~l~~~~------- 200 (622)
T 3g06_A 149 SDN-QLASLPA----LPSELCKLWAYNNQLTS-LP---------------MLPSGLQELSVSDNQLASLPTLP------- 200 (622)
T ss_dssp CSS-CCSCCCC----CCTTCCEEECCSSCCSC-CC---------------CCCTTCCEEECCSSCCSCCCCCC-------
T ss_pred cCC-cCCCcCC----ccCCCCEEECCCCCCCC-Cc---------------ccCCCCcEEECCCCCCCCCCCcc-------
Confidence 998 4677775 35789999998765321 11 33578888888887776544321
Q ss_pred cccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCC
Q 048789 548 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKL 627 (724)
Q Consensus 548 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 627 (724)
.+|+.|.+.++. +..++ ..+++|+.|++++|.++.+ |. .+++|+.|++++|. +..+
T Consensus 201 ~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~L~~l-p~-----------~l~~L~~L~Ls~N~-L~~l------ 256 (622)
T 3g06_A 201 SELYKLWAYNNR-LTSLP----ALPSGLKELIVSGNRLTSL-PV-----------LPSELKELMVSGNR-LTSL------ 256 (622)
T ss_dssp TTCCEEECCSSC-CSSCC----CCCTTCCEEECCSSCCSCC-CC-----------CCTTCCEEECCSSC-CSCC------
T ss_pred chhhEEECcCCc-ccccC----CCCCCCCEEEccCCccCcC-CC-----------CCCcCcEEECCCCC-CCcC------
Confidence 267888887653 33322 1247899999999888763 31 35788899888763 3322
Q ss_pred CCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCCC
Q 048789 628 SEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCP 677 (724)
Q Consensus 628 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~ 677 (724)
| . .+++|+.|+|+++ +++.++.....+++|+.|.+++++
T Consensus 257 ---p-----~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 257 ---P-----M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ---C-----C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ---C-----c--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 1 1 4688999999885 677777666778899999998875
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=4.5e-14 Score=144.70 Aligned_cols=188 Identities=21% Similarity=0.226 Sum_probs=141.7
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeec
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNL 467 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 467 (724)
.+++|+.|++++|.+...+ .+..+++|++|++++|. .++. +..+++|++|++++|.+..+| .+..+.+|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 4678999999999877654 37889999999999998 6666 999999999999999999886 6889999999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQY 547 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 547 (724)
++|. +..+|. +..+++|++|++.+|.... +..+..+++|+.|+++.+.+..++.+...
T Consensus 115 ~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~l----- 172 (308)
T 1h6u_A 115 TSTQ-ITDVTP--LAGLSNLQVLYLDLNQITN--------------ISPLAGLTNLQYLSIGNAQVSDLTPLANL----- 172 (308)
T ss_dssp TTSC-CCCCGG--GTTCTTCCEEECCSSCCCC--------------CGGGGGCTTCCEEECCSSCCCCCGGGTTC-----
T ss_pred CCCC-CCCchh--hcCCCCCCEEECCCCccCc--------------CccccCCCCccEEEccCCcCCCChhhcCC-----
Confidence 9994 677775 8999999999999875321 11267788899998887777655442111
Q ss_pred cccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 548 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 548 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
.+|+.|.++++. +..+. .+..+++|++|++++|.++.+.+ + ..+++|+.|++++++
T Consensus 173 ~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~N~l~~~~~--l--------~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 173 SKLTTLKADDNK-ISDIS--PLASLPNLIEVHLKNNQISDVSP--L--------ANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCCEEECCSSC-CCCCG--GGGGCTTCCEEECTTSCCCBCGG--G--------TTCTTCCEEEEEEEE
T ss_pred CCCCEEECCCCc-cCcCh--hhcCCCCCCEEEccCCccCcccc--c--------cCCCCCCEEEccCCe
Confidence 267777777653 33332 36677888888888887775421 2 246788888887765
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=6.1e-14 Score=142.22 Aligned_cols=195 Identities=18% Similarity=0.169 Sum_probs=131.2
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchHHhccccCcEe
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCL 465 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 465 (724)
..+++++.+++.++.++.+++.++ +.+++|+++++. ..|..+..+++|++|+|++|.+..+|.. +.+.+|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 456778888888888877765543 578889999888 3456788889999999999988888765 788889999
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCML 545 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l 545 (724)
++++| .+..+|.. +..+++|++|++.+|.... ++ ...+..+++|+.|+++.+.+
T Consensus 83 ~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~-l~-----------~~~~~~l~~L~~L~L~~N~l------------ 136 (290)
T 1p9a_G 83 DLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS-LP-----------LGALRGLGELQELYLKGNEL------------ 136 (290)
T ss_dssp ECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC-CC-----------SSTTTTCTTCCEEECTTSCC------------
T ss_pred ECCCC-cCCcCchh-hccCCCCCEEECCCCcCcc-cC-----------HHHHcCCCCCCEEECCCCCC------------
Confidence 99888 46788875 7888889999888764321 10 11234455555554433222
Q ss_pred cccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccC
Q 048789 546 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSE 625 (724)
Q Consensus 546 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~ 625 (724)
..+....+..+++|+.|++++|.++.+++..+. .+++|+.|+++++. ++.+
T Consensus 137 ----------------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--------~l~~L~~L~L~~N~-l~~i---- 187 (290)
T 1p9a_G 137 ----------------KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--------GLENLDTLLLQENS-LYTI---- 187 (290)
T ss_dssp ----------------CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT--------TCTTCCEEECCSSC-CCCC----
T ss_pred ----------------CccChhhcccccCCCEEECCCCcCCccCHHHhc--------CcCCCCEEECCCCc-CCcc----
Confidence 222223456778888888888888765443333 46788888887664 2222
Q ss_pred CCCCcccccccCCCcccccceecccc
Q 048789 626 KLSEVPAEVMENLIPFARLERLILEE 651 (724)
Q Consensus 626 ~~~~~~~~~~~~~~~fp~L~~L~l~~ 651 (724)
| .....+++|+.|.|.+
T Consensus 188 -----p----~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 188 -----P----KGFFGSHLLPFAFLHG 204 (290)
T ss_dssp -----C----TTTTTTCCCSEEECCS
T ss_pred -----C----hhhcccccCCeEEeCC
Confidence 1 1334456788887775
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=1e-14 Score=143.78 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=140.7
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCch-hhhccccCCeeecCC-CCccccch-HHhccccCcE
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLF-EISKVVSLQHLDLSH-SRIERLPI-EFKYLVNLKC 464 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~-~i~~L~~L~~L~L~~-~~i~~Lp~-~i~~L~~L~~ 464 (724)
.+.|+.|++++|.+..+++..|..+++|++|+++++. .+|. .+..+++|++|++++ |.++.+|. .+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3589999999999999988889999999999999994 4554 788999999999998 89998875 5789999999
Q ss_pred eecCCcccccccChhhhcCCCcCc---EEeccccCCCcccccccccCCcccchHHhhcCCCCC-eEEEEEcchhhhHHHh
Q 048789 465 LNLEYTYGVLKIPPKVISNLKILQ---TLRMYECATVPQARDSILFGDCRVLVEELLCLEHLS-VFTITLNNFHALQRLL 540 (724)
Q Consensus 465 L~l~~~~~~~~lp~~~i~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~-~L~i~~~~~~~~~~~~ 540 (724)
|++++|. +..+|. +..+++|+ +|++.+|..+..++ ...+..+++|+ .|+++.+.+..++...
T Consensus 110 L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~-----------~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 110 LGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSIP-----------VNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp EEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEEC-----------TTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred EeCCCCC-Cccccc--cccccccccccEEECCCCcchhhcC-----------cccccchhcceeEEEcCCCCCcccCHhh
Confidence 9999994 677886 78888888 99999873333222 12356677888 8887766665443211
Q ss_pred ccccccccccCcEEeeccCCCCcccccccccc-cccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 541 DSCMLQYVSTPSLCLSHFNNSKSLGVFSLASL-RHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 541 ~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
+...+|+.|.+.++..+..++...+..+ ++|+.|++++|.++.+++. .+++|+.|.+.++.
T Consensus 176 ----~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-----------~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 ----FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-----------GLEHLKELIARNTW 237 (239)
T ss_dssp ----TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-----------TCTTCSEEECTTC-
T ss_pred ----cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-----------HhccCceeeccCcc
Confidence 1112566666666533455544456666 6777777777666653222 25566666666553
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=5.5e-14 Score=141.22 Aligned_cols=194 Identities=22% Similarity=0.249 Sum_probs=107.6
Q ss_pred ceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccchHH-hccccCcEeecCC
Q 048789 394 LRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPIEF-KYLVNLKCLNLEY 469 (724)
Q Consensus 394 Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~L~l~~ 469 (724)
.++++++++.++.++... .+.|+.|+++++. .+|. .+..+++|++|++++|.+..+|..+ ..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 456666666655544332 1456666666666 4443 5666666777777666666666543 5566667777666
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHH-hcccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRL-LDSCMLQYV 548 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~-~~~~~l~~~ 548 (724)
| .+..+|...+..+++|++|++.+|.... .....+..+++|+.|+++.+.+..++.. +.. ..
T Consensus 95 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----l~ 157 (270)
T 2o6q_A 95 N-KLQALPIGVFDQLVNLAELRLDRNQLKS------------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK----LT 157 (270)
T ss_dssp S-CCCCCCTTTTTTCSSCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----CT
T ss_pred C-cCCcCCHhHcccccCCCEEECCCCccCe------------eCHHHhCcCcCCCEEECCCCcCCccCHhHccC----Cc
Confidence 6 3555665545666666766666553221 0112244556666666655544432210 000 11
Q ss_pred ccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 549 STPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 549 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
+|+.|.++++ .+..+....+..+++|++|++++|.++.+.+..+. .+++|+.|++++++
T Consensus 158 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD--------SLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--------TCTTCCEEECCSSC
T ss_pred ccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc--------cccCCCEEEecCCC
Confidence 4555555543 23333333466677788888887777765443332 45677777776654
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=1.5e-14 Score=150.58 Aligned_cols=222 Identities=20% Similarity=0.169 Sum_probs=155.2
Q ss_pred cceEEEeecccccccChhhhhcC--CCceEEEccCCC--CCchhhhccccCCeeecCCCCccc--cchHHhccccCcEee
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSM--ASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIER--LPIEFKYLVNLKCLN 466 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l--~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~--Lp~~i~~L~~L~~L~ 466 (724)
.++.++++++.+. +..+..+ +.+++|+++++. ..+..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4788999888654 4567777 889999999988 555567789999999999998763 888889999999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEc-chhh--hHHHhccc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLN-NFHA--LQRLLDSC 543 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~-~~~~--~~~~~~~~ 543 (724)
+++|......|.. ++.+++|++|++.+|..+.. ......+..+++|+.|+++.+ .+.. ++.....
T Consensus 125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~----------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~- 192 (336)
T 2ast_B 125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE----------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH- 192 (336)
T ss_dssp CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH----------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-
T ss_pred CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH----------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh-
Confidence 9999643355554 88899999999998843321 123334677889999998877 6653 3332221
Q ss_pred ccccc-ccCcEEeeccC-CCCcccc-cccccccccceEEeecCC-cceEEEccCCccccccccCCCCcceEEEecCcchh
Q 048789 544 MLQYV-STPSLCLSHFN-NSKSLGV-FSLASLRHLQTLHLTYND-LEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDME 619 (724)
Q Consensus 544 ~l~~~-~L~~L~l~~~~-~~~~~~~-~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~ 619 (724)
.. +|++|.++++. ......+ ..+..+++|++|++++|. ++...+..+. .+++|+.|++++|..+.
T Consensus 193 ---l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--------~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 193 ---VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--------QLNYLQHLSLSRCYDII 261 (336)
T ss_dssp ---SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--------GCTTCCEEECTTCTTCC
T ss_pred ---cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh--------CCCCCCEeeCCCCCCCC
Confidence 12 68888888764 2332211 245578899999999876 5432333332 46899999999986332
Q ss_pred hhhccCCCCCcccccccCCCcccccceeccccc
Q 048789 620 EIISSEKLSEVPAEVMENLIPFARLERLILEEL 652 (724)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 652 (724)
... ......+|+|++|++++|
T Consensus 262 ~~~------------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PET------------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGG------------GGGGGGCTTCCEEECTTS
T ss_pred HHH------------HHHHhcCCCCCEEeccCc
Confidence 210 013456899999999987
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=3.6e-13 Score=153.11 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=66.9
Q ss_pred ccccccceEEeecCC-cceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceec
Q 048789 570 ASLRHLQTLHLTYND-LEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLI 648 (724)
Q Consensus 570 ~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~ 648 (724)
..++.|+.|++++|. ...+.|..+. .+++|+.|+|++|. ++.+.. .....+++|++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~--------~l~~L~~L~Ls~N~-L~~l~~------------~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFT--------ELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLN 524 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCT--------TCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEE
T ss_pred ccchhhhhhhhhhcccccccCchhhh--------hccccCEEECCCCc-cCCcCh------------HHHcCCCCCCEEE
Confidence 456789999999975 4555666664 57899999999884 444422 2456789999999
Q ss_pred cccccccccccCC-CCCCCCccEEeecCCCCCCCCCCC
Q 048789 649 LEELKNLKTIHSK-ALPFPCLKEMSVDGCPLLKKLPLD 685 (724)
Q Consensus 649 l~~~~~L~~~~~~-~~~~p~L~~L~i~~C~~L~~lp~~ 685 (724)
|++ .+++.++.. ...+++|+.|.++++ ++..+|..
T Consensus 525 Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 560 (635)
T 4g8a_A 525 MSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQ 560 (635)
T ss_dssp CTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSS
T ss_pred CCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHH
Confidence 998 467776543 356899999999986 56665543
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=3.1e-14 Score=148.17 Aligned_cols=201 Identities=19% Similarity=0.141 Sum_probs=152.8
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC----CCchhhhccccCCeeecCCCCcc-ccchHHhccccCcEee
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN----PLLFEISKVVSLQHLDLSHSRIE-RLPIEFKYLVNLKCLN 466 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~----~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~ 466 (724)
+.++.|++.+|.+....+. +..+++|++|+++++. .+|..+..+++|++|++++|.+. ..|..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6899999999987777666 4578999999999998 27888999999999999999887 6788899999999999
Q ss_pred cCCcccccc--cChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCC-CCCeEEEEEcch----hhhHHH
Q 048789 467 LEYTYGVLK--IPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLE-HLSVFTITLNNF----HALQRL 539 (724)
Q Consensus 467 l~~~~~~~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~L~~L~i~~~~~----~~~~~~ 539 (724)
+++|..+.. +|.. +..+++|++|++.+|..+. .......+..++ +|+.|+++.+.. ..++..
T Consensus 149 L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~----------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 149 LSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT----------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp CTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC----------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred CCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC----------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 999954442 5544 7889999999999884332 112344577788 999999987743 344444
Q ss_pred hccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecC
Q 048789 540 LDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENC 615 (724)
Q Consensus 540 ~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c 615 (724)
..... +|+.|.++++..++......+..+++|++|++++|. .+.+..+..+ ..+++|+.|++++|
T Consensus 218 ~~~~~----~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l-----~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 218 VRRCP----NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLEL-----GEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHCT----TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGG-----GGCTTCCEEECTTS
T ss_pred HhhCC----CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHH-----hcCCCCCEEeccCc
Confidence 43332 899999999875555555578889999999999974 1123322111 24899999999998
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=1.5e-14 Score=153.61 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=123.0
Q ss_pred CCcceEEEeecccccccChh----hhhcCCCceEEEccCCC------CCchhh-------hccccCCeeecCCCCccc--
Q 048789 391 CPRLRTLFLSSNIFHRVNSD----FFQSMASLRVLKLSYSN------PLLFEI-------SKVVSLQHLDLSHSRIER-- 451 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~----~~~~l~~Lr~L~l~~~~------~lp~~i-------~~L~~L~~L~L~~~~i~~-- 451 (724)
+++|++|++++|.+....+. .+..+++|++|+|+++. .+|..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 56788899988876654332 35678889999998874 345444 678889999998888775
Q ss_pred ---cchHHhccccCcEeecCCcccccc-----cChhhhcCC---------CcCcEEeccccCCCcccccccccCCcccch
Q 048789 452 ---LPIEFKYLVNLKCLNLEYTYGVLK-----IPPKVISNL---------KILQTLRMYECATVPQARDSILFGDCRVLV 514 (724)
Q Consensus 452 ---Lp~~i~~L~~L~~L~l~~~~~~~~-----lp~~~i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 514 (724)
+|..+..+++|++|++++|. +.. ++.. +..+ ++|++|++.+|..... ......
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--------~~~~l~ 180 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLENG--------SMKEWA 180 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTGG--------GHHHHH
T ss_pred HHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCcH--------HHHHHH
Confidence 77788888899999998885 332 2221 3334 7888888887753210 011222
Q ss_pred HHhhcCCCCCeEEEEEcchh--hhHHHhccccccccccCcEEeeccCCC----CcccccccccccccceEEeecCCcceE
Q 048789 515 EELLCLEHLSVFTITLNNFH--ALQRLLDSCMLQYVSTPSLCLSHFNNS----KSLGVFSLASLRHLQTLHLTYNDLEEI 588 (724)
Q Consensus 515 ~~L~~L~~L~~L~i~~~~~~--~~~~~~~~~~l~~~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~l~~~ 588 (724)
..+..+++|+.|.++.+.+. .+..+.........+|+.|.++++.-. ..+. ..+..+++|++|++++|.++..
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCCCCchh
Confidence 45667778888888776665 222222211111125666666654311 1111 1345566666666666655432
Q ss_pred EEccCCccccccccCCCCcceEEEecCc
Q 048789 589 KIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 589 ~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
....++ ..+....+++|+.|+|++|.
T Consensus 260 ~~~~l~--~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 260 GAAAVV--DAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHH--HHHHTCSSCCCCEEECCSSC
T ss_pred hHHHHH--HHHhhccCCCeEEEECcCCc
Confidence 100000 00111125666666666654
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=9e-14 Score=140.96 Aligned_cols=175 Identities=22% Similarity=0.199 Sum_probs=136.5
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
.+.++.|++++|.+....+..|..+++|++|+++++. .+|. .+.+++|++|++++|.+..+|..+..+.+|++|+++
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 3689999999999988888889999999999999999 5554 378999999999999999999999999999999999
Q ss_pred CcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccccccc
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYV 548 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 548 (724)
+| .+..+|++.+..+++|++|++.+|.... ++ ...+..+++|+.|+++.+.+
T Consensus 109 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~-----------~~~~~~l~~L~~L~L~~N~l--------------- 160 (290)
T 1p9a_G 109 FN-RLTSLPLGALRGLGELQELYLKGNELKT-LP-----------PGLLTPTPKLEKLSLANNNL--------------- 160 (290)
T ss_dssp SS-CCCCCCSSTTTTCTTCCEEECTTSCCCC-CC-----------TTTTTTCTTCCEEECTTSCC---------------
T ss_pred CC-cCcccCHHHHcCCCCCCEEECCCCCCCc-cC-----------hhhcccccCCCEEECCCCcC---------------
Confidence 99 4788887779999999999999875321 11 11234566666665543332
Q ss_pred ccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 549 STPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 549 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
..++...+..+++|+.|++++|.++.+ |.++. ..++|+.|.|.+++
T Consensus 161 -------------~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~--------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 161 -------------TELPAGLLNGLENLDTLLLQENSLYTI-PKGFF--------GSHLLPFAFLHGNP 206 (290)
T ss_dssp -------------SCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTT--------TTCCCSEEECCSCC
T ss_pred -------------CccCHHHhcCcCCCCEEECCCCcCCcc-Chhhc--------ccccCCeEEeCCCC
Confidence 233333567788999999999988874 54443 35688888887654
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=3.5e-14 Score=155.08 Aligned_cols=220 Identities=18% Similarity=0.142 Sum_probs=163.9
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEe
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCL 465 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 465 (724)
+..+++|++|++++|.+...++ |..+++|++|++++|. .+| ..++|++|++++|.+..+|.. .+++|++|
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L 125 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNI 125 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCCCEEEC--CCSSCEEE
T ss_pred HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEECcCCcCCCCCcc--ccCCCCEE
Confidence 4578899999999999877665 8999999999999997 444 348999999999999987753 57899999
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhh-cCCCCCeEEEEEcchhhhHHHhcccc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELL-CLEHLSVFTITLNNFHALQRLLDSCM 544 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~~L~~L~i~~~~~~~~~~~~~~~~ 544 (724)
++++|. +..+++..++.+++|++|++++|..... .+..+. .+++|+.|+++.+.+..++...
T Consensus 126 ~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---- 188 (487)
T 3oja_A 126 YLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV------------NFAELAASSDTLEHLNLQYNFIYDVKGQV---- 188 (487)
T ss_dssp ECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEE------------EGGGGGGGTTTCCEEECTTSCCCEEECCC----
T ss_pred ECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCc------------ChHHHhhhCCcccEEecCCCccccccccc----
Confidence 999995 5666554489999999999998764321 233343 6889999999888876653222
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhcc
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISS 624 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~ 624 (724)
...+|+.|+++++. +..++. .+..+++|+.|++++|.++.+ |.++. .+++|+.|++++++.....+.
T Consensus 189 -~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~--------~l~~L~~L~l~~N~l~c~~~~- 255 (487)
T 3oja_A 189 -VFAKLKTLDLSSNK-LAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALR--------FSQNLEHFDLRGNGFHCGTLR- 255 (487)
T ss_dssp -CCTTCCEEECCSSC-CCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCC--------CCTTCCEEECTTCCBCHHHHH-
T ss_pred -cCCCCCEEECCCCC-CCCCCH-hHcCCCCccEEEecCCcCccc-chhhc--------cCCCCCEEEcCCCCCcCcchH-
Confidence 12378899998854 444443 477899999999999999874 66554 578999999998865422111
Q ss_pred CCCCCcccccccCCCcccccceeccccccccc
Q 048789 625 EKLSEVPAEVMENLIPFARLERLILEELKNLK 656 (724)
Q Consensus 625 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~ 656 (724)
.....+++|+.|.+..+..+.
T Consensus 256 -----------~~~~~l~~L~~l~~~~~~~~~ 276 (487)
T 3oja_A 256 -----------DFFSKNQRVQTVAKQTVKKLT 276 (487)
T ss_dssp -----------HHHTTCHHHHHHHHHHHHHHT
T ss_pred -----------HHHHhCCCCcEEecccccccc
Confidence 134457888888886554443
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=5.8e-14 Score=151.80 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=89.1
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccC-------------CeeecCCCCccccch
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSL-------------QHLDLSHSRIERLPI 454 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L-------------~~L~L~~~~i~~Lp~ 454 (724)
..+|++|++++|.+..+ |..+.++++|++|+++++. .+|.+++.+.+| ++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 46777788877777443 4447778888888887776 677777776654 777777777776665
Q ss_pred HHhccccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCc--ccccc-----cccCCcccchHHhhcCCCCCeEE
Q 048789 455 EFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVP--QARDS-----ILFGDCRVLVEELLCLEHLSVFT 527 (724)
Q Consensus 455 ~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~--~~~~~-----~~~~~~~~~~~~L~~L~~L~~L~ 527 (724)
. ..+|++|++++|. +..+|.. +++|++|++++|.... ..+.. +....... +.++..+++|+.|+
T Consensus 89 ~---~~~L~~L~l~~n~-l~~lp~~----~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~ 159 (454)
T 1jl5_A 89 L---PPHLESLVASCNS-LTELPEL----PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LPELQNSSFLKIID 159 (454)
T ss_dssp C---CTTCSEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEE
T ss_pred C---cCCCCEEEccCCc-CCccccc----cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-CcccCCCCCCCEEE
Confidence 2 3567777777663 4556642 3566666666553221 11000 00011111 22466777777777
Q ss_pred EEEcchhhhHHHhccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcce
Q 048789 528 ITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEE 587 (724)
Q Consensus 528 i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 587 (724)
++.+.+..++... .+|+.|.++++. +..++ .+..+++|++|++++|.+++
T Consensus 160 l~~N~l~~lp~~~-------~~L~~L~L~~n~-l~~l~--~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 160 VDNNSLKKLPDLP-------PSLEFIAAGNNQ-LEELP--ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSCCCCCC-------TTCCEEECCSSC-CSSCC--CCTTCTTCCEEECCSSCCSS
T ss_pred CCCCcCcccCCCc-------ccccEEECcCCc-CCcCc--cccCCCCCCEEECCCCcCCc
Confidence 7766665443211 167777777653 33332 46677777777777776665
No 82
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.45 E-value=1.1e-12 Score=137.31 Aligned_cols=196 Identities=17% Similarity=0.167 Sum_probs=132.9
Q ss_pred CCccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC------CHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL------QLAKIQEG 226 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~------~~~~~~~~ 226 (724)
+..++||+++++.+.+++..+ +++.|+|++|+|||||++.+++.. . .+|+++.... +...+.+.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 457999999999999998764 799999999999999999999875 1 6777765432 56677777
Q ss_pred HHHHcCCC--------------cc--ccCCcCHHHHHHHHHHHHcc-CceEEEeccccChhc---------hhhccCCCC
Q 048789 227 IAKKMGLF--------------NE--SWQSKGLEEKANKIFKILSK-KKFVLLLDDIWELVD---------LAQVGLPVS 280 (724)
Q Consensus 227 i~~~l~~~--------------~~--~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~~~ 280 (724)
+...+... .. ........+..+.+.+.... ++++||+||++.... +..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 77665430 00 00123556666666665543 499999999976432 122211111
Q ss_pred CCCCCCcEEEEecCChHHHhhc-----------cC-ccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHh
Q 048789 281 SCASSSNKIVFTTREIEVCGQM-----------EA-HRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVAREC 348 (724)
Q Consensus 281 ~~~~g~s~iliTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c 348 (724)
. ..+ .++++|++...+...+ +. ...+.+.+|+.+++.+++...+...... --.+....|++.|
T Consensus 161 ~-~~~-~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~t 235 (350)
T 2qen_A 161 S-LPN-LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELL 235 (350)
T ss_dssp H-CTT-EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHH
T ss_pred h-cCC-eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHh
Confidence 1 134 7899998876542111 11 2368899999999999998765322211 1145678899999
Q ss_pred CCCCchHHHHHHHHh
Q 048789 349 GGLPLALITVGRAMA 363 (724)
Q Consensus 349 ~g~Plai~~~~~~l~ 363 (724)
+|+|+++..++..+.
T Consensus 236 gG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 236 DGIPGWLVVFGVEYL 250 (350)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999998887643
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=5.3e-13 Score=136.66 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=142.3
Q ss_pred CCCCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchHHhccccCc
Q 048789 385 FSESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLK 463 (724)
Q Consensus 385 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~ 463 (724)
++....+++|++|++++|.+...++ +..+++|++|+++++. .-++.+..+++|++|++++|.+..+|. +..+++|+
T Consensus 56 l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 56 IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ 132 (308)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence 4455678999999999999887766 8999999999999999 333479999999999999999999875 89999999
Q ss_pred EeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccc
Q 048789 464 CLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSC 543 (724)
Q Consensus 464 ~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~ 543 (724)
+|++++|. +..++. ++.+++|++|++.+|.... +..+..+++|+.|+++.+.+..++.+...
T Consensus 133 ~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~l- 194 (308)
T 1h6u_A 133 VLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSD--------------LTPLANLSKLTTLKADDNKISDISPLASL- 194 (308)
T ss_dssp EEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCC--------------CGGGTTCTTCCEEECCSSCCCCCGGGGGC-
T ss_pred EEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCC--------------ChhhcCCCCCCEEECCCCccCcChhhcCC-
Confidence 99999994 677776 8999999999999875321 12277899999999998888766543222
Q ss_pred cccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceE
Q 048789 544 MLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEI 588 (724)
Q Consensus 544 ~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 588 (724)
.+|+.|.++++. +.... .+..+++|+.|++++|.++..
T Consensus 195 ----~~L~~L~L~~N~-l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 195 ----PNLIEVHLKNNQ-ISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ----TTCCEEECTTSC-CCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred ----CCCCEEEccCCc-cCccc--cccCCCCCCEEEccCCeeecC
Confidence 278889998864 33333 478899999999999887753
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=4.3e-13 Score=134.70 Aligned_cols=177 Identities=24% Similarity=0.288 Sum_probs=140.4
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hhccccCCeeecCCCCccccchH-HhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-ISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l 467 (724)
+.++.|++++|.+...++..|..+++|++|+++++. .+|.. +..+++|++|++++|.+..+|.. +..+.+|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 579999999999988888889999999999999998 77765 47899999999999999988865 588999999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHH-hcccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRL-LDSCMLQ 546 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~-~~~~~l~ 546 (724)
++|. +..+|...+..+++|++|++.+|.... + ....+..+++|+.|+++.+.+..++.. +..
T Consensus 117 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---- 179 (270)
T 2o6q_A 117 DRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS-L-----------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDK---- 179 (270)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-C-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----
T ss_pred CCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc-c-----------CHhHccCCcccceeEecCCcCcEeChhHhcc----
Confidence 9984 677877768999999999999875321 1 112357789999999988777654421 111
Q ss_pred ccccCcEEeeccCCCCcccccccccccccceEEeecCCcc
Q 048789 547 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLE 586 (724)
Q Consensus 547 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 586 (724)
..+|+.|.++++ .+..++...+..+++|+.|++++|.+.
T Consensus 180 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 180 LTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCee
Confidence 127888999875 455555556788999999999998654
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.44 E-value=8.9e-13 Score=142.48 Aligned_cols=223 Identities=20% Similarity=0.199 Sum_probs=117.2
Q ss_pred CCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccChhhhcCCCcCcEEecc
Q 048789 416 ASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMY 493 (724)
Q Consensus 416 ~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~ 493 (724)
++|++|++++|. .+| +++.+++|++|++++|.++.+|..+ .+|++|++++| .+..+|. ++.+++|++|++.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECC
Confidence 456666666666 555 4666666666666666666665432 36666666666 3455552 6666666666666
Q ss_pred ccCCCcccccc--------cccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccc
Q 048789 494 ECATVPQARDS--------ILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLG 565 (724)
Q Consensus 494 ~~~~~~~~~~~--------~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~ 565 (724)
+|.... +|.. +...... .+.++..+++|+.|+++.+.+..++... .+|+.|.++++. ...++
T Consensus 204 ~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~~~-------~~L~~L~l~~N~-l~~l~ 273 (454)
T 1jl5_A 204 NNSLKK-LPDLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPDLP-------PSLEALNVRDNY-LTDLP 273 (454)
T ss_dssp SSCCSS-CCCCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCSCC-------TTCCEEECCSSC-CSCCC
T ss_pred CCcCCc-CCCCcCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCcccccc-------cccCEEECCCCc-ccccC
Confidence 554321 1110 0001111 1123566777777777766655433211 256677776543 22221
Q ss_pred ccccccccccceEEeecCCcceEEEccCCccccc-------cc-cCC-CCcceEEEecCcchhhhhccCCCCCccccccc
Q 048789 566 VFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRV-------RE-LSA-PNLKRVEIENCQDMEEIISSEKLSEVPAEVME 636 (724)
Q Consensus 566 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L-------~~-~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~ 636 (724)
. .+++|++|++++|.++++ |.....+..| .. ..+ ++|+.|+++++. + ..+|
T Consensus 274 ~----~~~~L~~L~ls~N~l~~l-~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l---------~~lp----- 333 (454)
T 1jl5_A 274 E----LPQSLTFLDVSENIFSGL-SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-L---------IELP----- 333 (454)
T ss_dssp C----CCTTCCEEECCSSCCSEE-SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-C---------SCCC-----
T ss_pred c----ccCcCCEEECcCCccCcc-cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-c---------cccc-----
Confidence 1 136677777777766652 2211111100 00 011 345555555432 1 1111
Q ss_pred CCCcccccceeccccccccccccCCCCCCCCccEEeecCCCCCCCC
Q 048789 637 NLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGCPLLKKL 682 (724)
Q Consensus 637 ~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~l 682 (724)
..+++|++|+++++ .++.++. .+++|+.|.++++ .+..+
T Consensus 334 --~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N-~l~~l 372 (454)
T 1jl5_A 334 --ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN-PLREF 372 (454)
T ss_dssp --CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSC
T ss_pred --ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC-CCCcC
Confidence 12678888888874 5666655 5788888888886 34443
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.44 E-value=7.8e-14 Score=143.32 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=102.1
Q ss_pred CCCcceEEEeecccccccChhhh--hcCCCceEEEccCCC--CCchhhhcc-----ccCCeeecCCCCccccc-hHHhcc
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFF--QSMASLRVLKLSYSN--PLLFEISKV-----VSLQHLDLSHSRIERLP-IEFKYL 459 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~--~~l~~Lr~L~l~~~~--~lp~~i~~L-----~~L~~L~L~~~~i~~Lp-~~i~~L 459 (724)
.+++|++|++++|.+....+..+ ..+++|++|+++++. ..|..++.+ ++|++|++++|.+..+| ..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 46899999999999876555443 899999999999999 668888888 99999999999999887 679999
Q ss_pred ccCcEeecCCcccccc--cChhhh--cCCCcCcEEeccccCCCcccccccccCCcccch-HHhhcCCCCCeEEEEEcchh
Q 048789 460 VNLKCLNLEYTYGVLK--IPPKVI--SNLKILQTLRMYECATVPQARDSILFGDCRVLV-EELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 460 ~~L~~L~l~~~~~~~~--lp~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~~L~~L~i~~~~~~ 534 (724)
++|++|++++|..... +|.. + +.+++|++|++.+|.... ..... .-+..+++|+.|+++.+.+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~----------~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGMET----------PSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCC----------HHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCcc----------hHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 9999999999964333 3333 4 889999999999875321 11111 12345677777776655543
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=5.4e-13 Score=134.49 Aligned_cols=180 Identities=21% Similarity=0.193 Sum_probs=128.7
Q ss_pred CCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccch-HHhccccC
Q 048789 387 ESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPI-EFKYLVNL 462 (724)
Q Consensus 387 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L 462 (724)
.+..+++|++|++++|.+...++..|..+++|++|+++++. ..|..+..+++|++|++++|.+..++. .++.+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 34568899999999999988888889999999999999998 344679999999999999999998876 58999999
Q ss_pred cEeecCCcccccc--cChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCC-eEEEEEcchhhhHHH
Q 048789 463 KCLNLEYTYGVLK--IPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLS-VFTITLNNFHALQRL 539 (724)
Q Consensus 463 ~~L~l~~~~~~~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~-~L~i~~~~~~~~~~~ 539 (724)
++|++++|. +.. +|.. +..+++|++|++.+|..... ....+..+..++.|. .|+++.+.+.
T Consensus 127 ~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~l~l~L~ls~n~l~----- 190 (276)
T 2z62_A 127 KELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI---------YCTDLRVLHQMPLLNLSLDLSLNPMN----- 190 (276)
T ss_dssp CEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE---------CGGGGHHHHTCTTCCEEEECCSSCCC-----
T ss_pred CEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcC---------CHHHhhhhhhccccceeeecCCCccc-----
Confidence 999999995 554 5665 99999999999998754321 112233444444444 4444433322
Q ss_pred hccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEec
Q 048789 540 LDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIEN 614 (724)
Q Consensus 540 ~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~ 614 (724)
.+....+. ..+|++|++++|.++.+.+..+. .+++|+.|++++
T Consensus 191 -----------------------~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~l~~ 233 (276)
T 2z62_A 191 -----------------------FIQPGAFK-EIRLKELALDTNQLKSVPDGIFD--------RLTSLQKIWLHT 233 (276)
T ss_dssp -----------------------EECTTSSC-SCCEEEEECCSSCCSCCCTTTTT--------TCCSCCEEECCS
T ss_pred -----------------------ccCccccC-CCcccEEECCCCceeecCHhHhc--------ccccccEEEccC
Confidence 11111222 23677777777777765333332 467777777774
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=1e-13 Score=144.96 Aligned_cols=219 Identities=14% Similarity=0.131 Sum_probs=133.1
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--C-Cch-hhhccccCCe-eecCCCCccccc-hHHhccccCcEe
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLF-EISKVVSLQH-LDLSHSRIERLP-IEFKYLVNLKCL 465 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~-~i~~L~~L~~-L~L~~~~i~~Lp-~~i~~L~~L~~L 465 (724)
++++.|++++|.++.+++..|.++++|++|+|++|. . +|. .+.+|++|+. +.+++|++..+| ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467777777777777777677777777777777776 2 332 4566666654 444556777664 345677777777
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcC-CCCCeEEEEEcchhhhHHHhcccc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCL-EHLSVFTITLNNFHALQRLLDSCM 544 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~i~~~~~~~~~~~~~~~~ 544 (724)
++++| .+..+|...+....++..|++.++..+..++.. .+..+ ..++.|.++.+.+..++...
T Consensus 110 ~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-----------~f~~~~~~l~~L~L~~N~i~~i~~~~---- 173 (350)
T 4ay9_X 110 LISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-----------SFVGLSFESVILWLNKNGIQEIHNSA---- 173 (350)
T ss_dssp EEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-----------SSTTSBSSCEEEECCSSCCCEECTTS----
T ss_pred ccccc-ccccCCchhhcccchhhhhhhcccccccccccc-----------chhhcchhhhhhccccccccCCChhh----
Confidence 77777 355666543445555666666554443322211 11222 24556666666665443211
Q ss_pred ccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhcc
Q 048789 545 LQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISS 624 (724)
Q Consensus 545 l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~ 624 (724)
....++..|.+.+++.+..++...+..+++|+.|++++|.++.+++. .+.+|+.|.+.++..++.+.
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-----------~~~~L~~L~~l~~~~l~~lP-- 240 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-----------GLENLKKLRARSTYNLKKLP-- 240 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS-----------SCTTCCEEECTTCTTCCCCC--
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh-----------hhccchHhhhccCCCcCcCC--
Confidence 11225677777776777777666677788888888888877765332 24566667666665555442
Q ss_pred CCCCCcccccccCCCcccccceecccc
Q 048789 625 EKLSEVPAEVMENLIPFARLERLILEE 651 (724)
Q Consensus 625 ~~~~~~~~~~~~~~~~fp~L~~L~l~~ 651 (724)
....|++|+.+.+.+
T Consensus 241 ------------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 ------------TLEKLVALMEASLTY 255 (350)
T ss_dssp ------------CTTTCCSCCEEECSC
T ss_pred ------------CchhCcChhhCcCCC
Confidence 345577777777754
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=1.4e-12 Score=130.94 Aligned_cols=203 Identities=18% Similarity=0.165 Sum_probs=139.5
Q ss_pred hhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccChhhhcCCCcCcEE
Q 048789 412 FQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTL 490 (724)
Q Consensus 412 ~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L 490 (724)
+..+++|+.|+++++. .-+..+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+|...++.+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 5678899999999998 55557899999999999999998875 7889999999999999 4677887767899999999
Q ss_pred eccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCcccccccc
Q 048789 491 RMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLA 570 (724)
Q Consensus 491 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~ 570 (724)
++.+|.... + ....+..+++|+.|+++.+.+ ..+....+.
T Consensus 115 ~L~~n~l~~-~-----------~~~~~~~l~~L~~L~L~~n~l----------------------------~~~~~~~~~ 154 (272)
T 3rfs_A 115 VLVENQLQS-L-----------PDGVFDKLTNLTYLNLAHNQL----------------------------QSLPKGVFD 154 (272)
T ss_dssp ECTTSCCCC-C-----------CTTTTTTCTTCCEEECCSSCC----------------------------CCCCTTTTT
T ss_pred ECCCCcCCc-c-----------CHHHhccCCCCCEEECCCCcc----------------------------CccCHHHhc
Confidence 999875321 1 111244555555555543332 222223466
Q ss_pred cccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccc
Q 048789 571 SLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILE 650 (724)
Q Consensus 571 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 650 (724)
.+++|+.|++++|.++.+.+..+. .+++|+.|++++|. +..+.. .....+++|++|++.
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFD--------KLTQLKDLRLYQNQ-LKSVPD------------GVFDRLTSLQYIWLH 213 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSC-CSCCCT------------TTTTTCTTCCEEECC
T ss_pred cCccCCEEECCCCCcCccCHHHhc--------CCccCCEEECCCCc-CCccCH------------HHHhCCcCCCEEEcc
Confidence 788899999999888876554443 46888899888774 222211 134567888888888
Q ss_pred cccccccccCCCCCCCCccEEeecCCCCCCCCCC
Q 048789 651 ELKNLKTIHSKALPFPCLKEMSVDGCPLLKKLPL 684 (724)
Q Consensus 651 ~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 684 (724)
+++-. +.+|+|+.+.+..+.--..+|.
T Consensus 214 ~N~~~-------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 214 DNPWD-------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp SSCBC-------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred CCCcc-------ccCcHHHHHHHHHHhCCCcccC
Confidence 75321 2345666665554433333443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=4.1e-13 Score=137.83 Aligned_cols=228 Identities=13% Similarity=0.108 Sum_probs=138.8
Q ss_pred CcceEEEeecccccccC-hh--hhhcCCCceEEEccCCC---CCchhh--hccccCCeeecCCCCccc-cc----hHHhc
Q 048789 392 PRLRTLFLSSNIFHRVN-SD--FFQSMASLRVLKLSYSN---PLLFEI--SKVVSLQHLDLSHSRIER-LP----IEFKY 458 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~-~~--~~~~l~~Lr~L~l~~~~---~lp~~i--~~L~~L~~L~L~~~~i~~-Lp----~~i~~ 458 (724)
..++.+.+.++.+.... .. .+..+++|++|+++++. ..|..+ ..+++|++|+|++|.+.. .| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45677777776543211 11 12345679999999998 677777 889999999999998874 22 34567
Q ss_pred cccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHH
Q 048789 459 LVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQR 538 (724)
Q Consensus 459 L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~ 538 (724)
+++|++|++++|. +..+|...++.+++|++|++++|....... ......+..+++|+.|+++.+.+..++.
T Consensus 144 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 144 KPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERG--------LMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp CSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHH--------HHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred ccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchh--------hhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 8999999999985 566666558899999999999875332100 0000112456667766666555543332
Q ss_pred HhccccccccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcch
Q 048789 539 LLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDM 618 (724)
Q Consensus 539 ~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l 618 (724)
.... .+..+++|++|++++|.++...|..+..+ ..+++|++|+++++. +
T Consensus 215 ~~~~-------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-----~~~~~L~~L~Ls~N~-l 263 (310)
T 4glp_A 215 VCAA-------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRC-----MWSSALNSLNLSFAG-L 263 (310)
T ss_dssp HHHH-------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSC-----CCCTTCCCEECCSSC-C
T ss_pred HHHH-------------------------HHhcCCCCCEEECCCCCCCccchhhHHhc-----cCcCcCCEEECCCCC-C
Confidence 1110 12445677777777777766544444321 113677777776653 2
Q ss_pred hhhhccCCCCCcccccccCCCcccccceeccccccccccccCCCCCCCCccEEeecCC
Q 048789 619 EEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKALPFPCLKEMSVDGC 676 (724)
Q Consensus 619 ~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~p~L~~L~i~~C 676 (724)
+.+ | ...+++|+.|+|++ .+++.++. ...+|+|+.|.+++.
T Consensus 264 ~~l---------p------~~~~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 264 EQV---------P------KGLPAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSC---------C------SCCCSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSST
T ss_pred Cch---------h------hhhcCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCC
Confidence 222 1 11236777777776 35555543 345667777766654
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=2.3e-12 Score=135.19 Aligned_cols=195 Identities=14% Similarity=0.180 Sum_probs=124.4
Q ss_pred CCccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-----CCHHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-----LQLAKIQEGI 227 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i 227 (724)
+..++||+++++.+.+ +.. +++.|+|++|+|||||++.+.+.. . . ..+|++.... .+...+...+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 3579999999999999 765 699999999999999999999886 2 2 2578887643 3445555554
Q ss_pred HHHcC--------------CC------c--ccc-----CCcCHHHHHHHHHHHHccCceEEEeccccChh-----chhhc
Q 048789 228 AKKMG--------------LF------N--ESW-----QSKGLEEKANKIFKILSKKKFVLLLDDIWELV-----DLAQV 275 (724)
Q Consensus 228 ~~~l~--------------~~------~--~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l 275 (724)
.+.+. .. . ... .........+.+.+... ++++||+||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 44331 00 0 000 01234444444443222 48999999996532 22211
Q ss_pred cCCCCCCCCCCcEEEEecCChHHHhh----------cc-C-ccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHH
Q 048789 276 GLPVSSCASSSNKIVFTTREIEVCGQ----------ME-A-HRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEA 343 (724)
Q Consensus 276 ~~~~~~~~~g~s~iliTtr~~~v~~~----------~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 343 (724)
...+.....+ .++|+|++....... +. . ...+.+.+|+.+++.+++...+...... .... ..
T Consensus 161 l~~~~~~~~~-~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~----~~ 234 (357)
T 2fna_A 161 LAYAYDNLKR-IKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKDY----EV 234 (357)
T ss_dssp HHHHHHHCTT-EEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCCH----HH
T ss_pred HHHHHHcCCC-eEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCcH----HH
Confidence 1111111234 789999998654221 11 1 2468899999999999998865321111 1121 78
Q ss_pred HHHHhCCCCchHHHHHHHHhc
Q 048789 344 VARECGGLPLALITVGRAMAS 364 (724)
Q Consensus 344 i~~~c~g~Plai~~~~~~l~~ 364 (724)
|++.|+|+|+++..++..+..
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHcc
Confidence 999999999999998877654
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1.5e-12 Score=132.13 Aligned_cols=170 Identities=20% Similarity=0.222 Sum_probs=121.9
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
..+++|+.|++++|.+...+ .+..+++|++|+++++. .++. +..+++|++|++++|.+..+|. +..+.+|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 34678999999999877663 27889999999999998 6665 8999999999999999988775 88999999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccccc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQ 546 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~ 546 (724)
+++|. +..++. +..+++|++|++.+|.... +..+..+++|+.|+++.+.+..++.+...
T Consensus 119 L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l---- 177 (291)
T 1h6t_A 119 LEHNG-ISDING--LVHLPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISDIVPLAGL---- 177 (291)
T ss_dssp CTTSC-CCCCGG--GGGCTTCCEEECCSSCCCC--------------CGGGGGCTTCSEEECCSSCCCCCGGGTTC----
T ss_pred CCCCc-CCCChh--hcCCCCCCEEEccCCcCCc--------------chhhccCCCCCEEEccCCccccchhhcCC----
Confidence 99984 666653 8899999999998775321 14567788888888876666544331111
Q ss_pred ccccCcEEeeccCCCCcccccccccccccceEEeecCCcce
Q 048789 547 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEE 587 (724)
Q Consensus 547 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 587 (724)
.+|+.|.++++. +..+. .+..+++|+.|++++|.+..
T Consensus 178 -~~L~~L~L~~N~-i~~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 178 -TKLQNLYLSKNH-ISDLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -TTCCEEECCSSC-CCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred -CccCEEECCCCc-CCCCh--hhccCCCCCEEECcCCcccC
Confidence 145556665532 22222 35556666666666655443
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.39 E-value=2.3e-12 Score=138.17 Aligned_cols=204 Identities=12% Similarity=0.113 Sum_probs=134.1
Q ss_pred CCccccchhhHHHHHHHh-hc------CCceEEEE--EcCCCCcHHHHHHHHHHhccCC--CCCCc-EEEEEEeCCcCCH
Q 048789 153 PATVVGLQSTFDGVWKCL-ME------EQMGIVGL--YGMGGVGKTTLLTQINNKFLDT--PNSFD-FVIWIVVSKDLQL 220 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~--~~~f~-~~~wv~v~~~~~~ 220 (724)
+..++||+.+++++.+++ .. .....+.| +|++|+||||||+.+++..... ...|. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 42 24567777 9999999999999999886210 01122 4678887677788
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccChh--------chhhccCCCCCC---C--CC
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWELV--------DLAQVGLPVSSC---A--SS 285 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~~~~~~~---~--~g 285 (724)
..++..++.+++..... ...+..+....+.+.+. +++++|||||++... .+..+...+... + .+
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 99999999998754321 23345666677777664 679999999997632 122221111111 1 23
Q ss_pred CcEEEEecCChHHHhhcc---------CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhC------C
Q 048789 286 SNKIVFTTREIEVCGQME---------AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECG------G 350 (724)
Q Consensus 286 ~s~iliTtr~~~v~~~~~---------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------g 350 (724)
..+|+||+...+...+. ....+.+.+++.++.+++|...+...... ..--.+....|++.|+ |
T Consensus 180 -v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 -IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp -EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCC
T ss_pred -EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCC
Confidence 56777887654321111 11238999999999999998764311100 1112466788999999 9
Q ss_pred CCchHHHHH
Q 048789 351 LPLALITVG 359 (724)
Q Consensus 351 ~Plai~~~~ 359 (724)
.|..+..+.
T Consensus 258 ~p~~~~~l~ 266 (412)
T 1w5s_A 258 SARRAIVAL 266 (412)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 997665544
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=1.8e-12 Score=128.51 Aligned_cols=172 Identities=19% Similarity=0.195 Sum_probs=98.1
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccchH-HhccccCcEeecC
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNLE 468 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~ 468 (724)
..+.++++++.+..++.... +.++.|+++++. . .|..+..+++|++|+|++|.+..++.. +..+.+|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34566666666655554322 456777777766 3 333566777777777777776655443 5667777777777
Q ss_pred CcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccccccc
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYV 548 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 548 (724)
+|. +..+|...+..+++|++|++.+|... .++ ...+..+.+|+.|+++.+.+.
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~-----------~~~~~~l~~L~~L~Ls~N~l~-------------- 144 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLK-SLP-----------SGVFDRLTKLKELRLNTNQLQ-------------- 144 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCC-----------TTTTTTCTTCCEEECCSSCCC--------------
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCCcCC-CcC-----------hhHhccCCcccEEECcCCcCC--------------
Confidence 763 55666555667777777777665321 111 111233444444444333222
Q ss_pred ccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 549 STPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 549 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
.+....+..+++|++|++++|.++.+.+..+. .+++|+.|++++++
T Consensus 145 --------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 145 --------------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD--------RLGKLQTITLFGNQ 190 (251)
T ss_dssp --------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--------TCTTCCEEECCSCC
T ss_pred --------------ccCHHHcCcCcCCCEEECCCCcCCccCHHHHh--------CCCCCCEEEeeCCc
Confidence 22222455667777777777777665443433 35677777776654
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=5.1e-13 Score=150.54 Aligned_cols=79 Identities=23% Similarity=0.234 Sum_probs=53.4
Q ss_pred CCcceEEEeeccccccc----ChhhhhcCCCceEEEccCCC-C------CchhhhccccCCeeecCCCCccccchHHhcc
Q 048789 391 CPRLRTLFLSSNIFHRV----NSDFFQSMASLRVLKLSYSN-P------LLFEISKVVSLQHLDLSHSRIERLPIEFKYL 459 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~----~~~~~~~l~~Lr~L~l~~~~-~------lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L 459 (724)
+++|++|++++|.+... .+..+..+++|++|+++++. . ++..+.++++|++|++++|.+..+|..+..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 56777888877765443 23345667777788777766 2 2334456777888888777777777777777
Q ss_pred ccCcEeecCC
Q 048789 460 VNLKCLNLEY 469 (724)
Q Consensus 460 ~~L~~L~l~~ 469 (724)
++|+.|+++.
T Consensus 243 ~~L~~L~l~~ 252 (592)
T 3ogk_B 243 ANLEEFCGGS 252 (592)
T ss_dssp TTCCEEEECB
T ss_pred hHHHhhcccc
Confidence 7777777753
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=1.5e-12 Score=123.96 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=112.8
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccc-cchHHhccccCcEeec
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIER-LPIEFKYLVNLKCLNL 467 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~i~~L~~L~~L~l 467 (724)
.+++|+.|++++|.+..++ .+..+++|++|++++|. ..++.+..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3578999999999887655 48899999999999998 666689999999999999998884 6778999999999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQY 547 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 547 (724)
++|......|.. ++.+++|++|++.+|..... +..+..+++|+.|+++.+.+.
T Consensus 120 s~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~-------------~~~l~~l~~L~~L~l~~n~i~------------- 172 (197)
T 4ezg_A 120 SHSAHDDSILTK-INTLPKVNSIDLSYNGAITD-------------IMPLKTLPELKSLNIQFDGVH------------- 172 (197)
T ss_dssp CSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCC-------------CGGGGGCSSCCEEECTTBCCC-------------
T ss_pred cCCccCcHhHHH-HhhCCCCCEEEccCCCCccc-------------cHhhcCCCCCCEEECCCCCCc-------------
Confidence 999643345554 89999999999998752221 123555666666655433322
Q ss_pred cccCcEEeeccCCCCcccccccccccccceEEeecCCcc
Q 048789 548 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLE 586 (724)
Q Consensus 548 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 586 (724)
.+. .+..+++|++|++++|.+.
T Consensus 173 ---------------~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 173 ---------------DYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ---------------CCT--TGGGCSSCCEEEECBC---
T ss_pred ---------------ChH--HhccCCCCCEEEeeCcccC
Confidence 221 4667888999999988765
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=3.6e-12 Score=133.87 Aligned_cols=241 Identities=16% Similarity=0.123 Sum_probs=155.4
Q ss_pred CCcceEEEeecccccccCh----hhhhcCC-CceEEEccCCC---CCchhhhcc-----ccCCeeecCCCCccccc-hH-
Q 048789 391 CPRLRTLFLSSNIFHRVNS----DFFQSMA-SLRVLKLSYSN---PLLFEISKV-----VSLQHLDLSHSRIERLP-IE- 455 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~---~lp~~i~~L-----~~L~~L~L~~~~i~~Lp-~~- 455 (724)
.++|+.|++++|.+....+ ..|..++ +|++|++++|. ..+..+..+ ++|++|+|++|.+...+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3569999999999888776 6788888 89999999998 556777775 99999999999988544 33
Q ss_pred ---Hhcc-ccCcEeecCCcccccccChhhhc----C-CCcCcEEeccccCCCcccccccccCCcccchHHhhcCC-CCCe
Q 048789 456 ---FKYL-VNLKCLNLEYTYGVLKIPPKVIS----N-LKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLE-HLSV 525 (724)
Q Consensus 456 ---i~~L-~~L~~L~l~~~~~~~~lp~~~i~----~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~L~~ 525 (724)
+..+ .+|++|++++|. +...+...+. . .++|++|++++|.... .........+..+. +|+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--------KSSDELIQILAAIPANVNS 171 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--------SCHHHHHHHHHTSCTTCCE
T ss_pred HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--------HHHHHHHHHHhcCCccccE
Confidence 4445 899999999995 5666654333 3 3699999999875321 11223344556665 8999
Q ss_pred EEEEEcchhhhH--HHhccccccc-cccCcEEeeccCCCCccccc----cccc-ccccceEEeecCCcceEEEccCCccc
Q 048789 526 FTITLNNFHALQ--RLLDSCMLQY-VSTPSLCLSHFNNSKSLGVF----SLAS-LRHLQTLHLTYNDLEEIKIDNGGEVK 597 (724)
Q Consensus 526 L~i~~~~~~~~~--~~~~~~~l~~-~~L~~L~l~~~~~~~~~~~~----~l~~-~~~L~~L~l~~~~l~~~~~~~~~~l~ 597 (724)
|+++.+.+.... .+...-. .. .+|+.|+++++. +...... .+.. .++|++|++++|.++...+..+...
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~- 248 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLA-SIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL- 248 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT-
T ss_pred eeecCCCCchhhHHHHHHHHH-hCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH-
Confidence 999887775322 1111100 01 278889998764 3332111 2333 4689999999988875433221100
Q ss_pred cccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccc
Q 048789 598 RVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEEL 652 (724)
Q Consensus 598 ~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 652 (724)
...+++|+.|++++|. +..+.. .... .+......+++|+.|++++.
T Consensus 249 ---~~~l~~L~~L~L~~n~-l~~i~~-~~~~----~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 249 ---KDSLKHLQTVYLDYDI-VKNMSK-EQCK----ALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp ---TTTTTTCSEEEEEHHH-HTTCCH-HHHH----HHHTTSTTCCEEEEECTTSC
T ss_pred ---HhcCCCccEEEeccCC-ccccCH-HHHH----HHHHHhccCCceEEEecCCC
Confidence 0246889999999885 111100 0000 11124456788999999874
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=4.9e-12 Score=125.42 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=121.1
Q ss_pred CceEEEccCCC--CCchhhhccccCCeeecCCCCccccch-HHhccccCcEeecCCcccccccChhhhcCCCcCcEEecc
Q 048789 417 SLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMY 493 (724)
Q Consensus 417 ~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~ 493 (724)
..+.++++++. .+|..+. .+|++|+|++|.+..++. .+..+.+|++|++++|. +..++...+..+++|++|++.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECC
Confidence 46789999888 8887765 689999999999997765 58999999999999994 677777668999999999999
Q ss_pred ccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccccccccccc
Q 048789 494 ECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLASLR 573 (724)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 573 (724)
+|.... + ....+..+++|+.|+++.+.+. .+....+..++
T Consensus 92 ~n~l~~-~-----------~~~~~~~l~~L~~L~L~~N~l~----------------------------~~~~~~~~~l~ 131 (251)
T 3m19_A 92 NNQLAS-L-----------PLGVFDHLTQLDKLYLGGNQLK----------------------------SLPSGVFDRLT 131 (251)
T ss_dssp TSCCCC-C-----------CTTTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCT
T ss_pred CCcccc-c-----------ChhHhcccCCCCEEEcCCCcCC----------------------------CcChhHhccCC
Confidence 775321 1 1122344555555555433322 22222456778
Q ss_pred ccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccc
Q 048789 574 HLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEEL 652 (724)
Q Consensus 574 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 652 (724)
+|++|++++|.++.+.+..+. .+++|+.|+|+++. +..+.. .....+++|++|+|.+.
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFD--------KLTNLQTLSLSTNQ-LQSVPH------------GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSC-CSCCCT------------TTTTTCTTCCEEECCSC
T ss_pred cccEEECcCCcCCccCHHHcC--------cCcCCCEEECCCCc-CCccCH------------HHHhCCCCCCEEEeeCC
Confidence 899999998888876554443 46788888888764 222211 13455788888888763
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.32 E-value=3.4e-13 Score=146.98 Aligned_cols=184 Identities=18% Similarity=0.225 Sum_probs=102.0
Q ss_pred cceEEEeecccccc----cChhhhhcCCCceEEEccCCC---CCchhhhc-----cccCCeeecCCCCccc-----cchH
Q 048789 393 RLRTLFLSSNIFHR----VNSDFFQSMASLRVLKLSYSN---PLLFEISK-----VVSLQHLDLSHSRIER-----LPIE 455 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~-----L~~L~~L~L~~~~i~~-----Lp~~ 455 (724)
+|++|++++|.+.. ..+..+..+++|++|+++++. ..+..+.. +.+|++|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57777777777653 235556777777788877776 22222222 4467777777776653 4556
Q ss_pred HhccccCcEeecCCcccccccChhhhc-----CCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEE
Q 048789 456 FKYLVNLKCLNLEYTYGVLKIPPKVIS-----NLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITL 530 (724)
Q Consensus 456 i~~L~~L~~L~l~~~~~~~~lp~~~i~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~ 530 (724)
+..+++|++|++++|. +.......+. .+++|++|++.+|..... ........+..+++|+.|+++.
T Consensus 166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 166 LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--------NCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT--------HHHHHHHHHHHCTTCCEEECCS
T ss_pred HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH--------HHHHHHHHHHhCCCccEEeccC
Confidence 6677777777777774 3222111122 355777777776643210 0112344566677777777776
Q ss_pred cchhhhH--HHhccccccccccCcEEeeccCCCCcccc----cccccccccceEEeecCCcc
Q 048789 531 NNFHALQ--RLLDSCMLQYVSTPSLCLSHFNNSKSLGV----FSLASLRHLQTLHLTYNDLE 586 (724)
Q Consensus 531 ~~~~~~~--~~~~~~~l~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~ 586 (724)
+.+.... .+.........+|+.|.++++. +..... ..+..+++|++|++++|.+.
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 6654321 1111110011267777777653 333211 13444677777777776554
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.32 E-value=1.2e-12 Score=147.37 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=52.2
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC------CCchhhhccccCCeeecCCCCccccchHHhccccCcE
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN------PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKC 464 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~------~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~ 464 (724)
+++|++|++.+|.+... +..+..+++|+.|+++... ..+..+..+++|+.|+++++....+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 45566666666554443 2445555556665555322 1222344445555555555444455666666666666
Q ss_pred eecCCcccccccChhhhcCCCcCcEEecc
Q 048789 465 LNLEYTYGVLKIPPKVISNLKILQTLRMY 493 (724)
Q Consensus 465 L~l~~~~~~~~lp~~~i~~l~~L~~L~l~ 493 (724)
|++++|..........+..+++|++|++.
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 66666641111111224566666666665
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.32 E-value=2.9e-13 Score=147.54 Aligned_cols=264 Identities=17% Similarity=0.142 Sum_probs=154.7
Q ss_pred CCcceEEEeeccccccc----ChhhhhcCCCceEEEccCCC---CCchhhh-ccc----cCCeeecCCCCcc-----ccc
Q 048789 391 CPRLRTLFLSSNIFHRV----NSDFFQSMASLRVLKLSYSN---PLLFEIS-KVV----SLQHLDLSHSRIE-----RLP 453 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~----~~~~~~~l~~Lr~L~l~~~~---~lp~~i~-~L~----~L~~L~L~~~~i~-----~Lp 453 (724)
+++|++|++++|.+... .+..+..+++|++|+++++. ..+..+. .+. +|++|++++|.+. .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 46778888888775532 24456677888888888776 2233332 244 5888888888766 457
Q ss_pred hHHhccccCcEeecCCccccccc-Ch----hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEE
Q 048789 454 IEFKYLVNLKCLNLEYTYGVLKI-PP----KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTI 528 (724)
Q Consensus 454 ~~i~~L~~L~~L~l~~~~~~~~l-p~----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i 528 (724)
..+..+++|++|++++|. +... +. ......++|++|++.+|..... ........+..+++|+.|++
T Consensus 107 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--------SCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--------GHHHHHHHHHHCTTCCEEEC
T ss_pred HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH--------HHHHHHHHHhhCCCCCEEEC
Confidence 777788888888888774 3221 11 1122355788888877643211 01223455677889999998
Q ss_pred EEcchhhh--HHHhccccccccccCcEEeeccCCCCccc----ccccccccccceEEeecCCcceEEEccCCcccccccc
Q 048789 529 TLNNFHAL--QRLLDSCMLQYVSTPSLCLSHFNNSKSLG----VFSLASLRHLQTLHLTYNDLEEIKIDNGGEVKRVREL 602 (724)
Q Consensus 529 ~~~~~~~~--~~~~~~~~l~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~ 602 (724)
+.+.+... ..+.........+|+.|.++++. +.... ...+..+++|++|++++|.+.......+.. .+ ..
T Consensus 178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~~-~~ 253 (461)
T 1z7x_W 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP--GL-LH 253 (461)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--HH-TS
T ss_pred cCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH--HH-hc
Confidence 87776532 22222111011278888888764 22221 124556789999999998765421111000 00 01
Q ss_pred CCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccceeccccccccccccC------CCCCCCCccEEeecCC
Q 048789 603 SAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELKNLKTIHS------KALPFPCLKEMSVDGC 676 (724)
Q Consensus 603 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~------~~~~~p~L~~L~i~~C 676 (724)
.+++|+.|++++|. +..... . .+......+++|++|+++++ .+..... -....++|+.|.+++|
T Consensus 254 ~~~~L~~L~L~~n~-l~~~~~----~----~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 254 PSSRLRTLWIWECG-ITAKGC----G----DLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp TTCCCCEEECTTSC-CCHHHH----H----HHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCCceEEECcCCC-CCHHHH----H----HHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 36899999999884 333100 0 01112345789999999885 3432211 1123479999999999
Q ss_pred C
Q 048789 677 P 677 (724)
Q Consensus 677 ~ 677 (724)
.
T Consensus 324 ~ 324 (461)
T 1z7x_W 324 S 324 (461)
T ss_dssp C
T ss_pred C
Confidence 5
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.31 E-value=7.3e-12 Score=126.98 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=126.3
Q ss_pred hhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccChhhhcCCCcCcE
Q 048789 412 FQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQT 489 (724)
Q Consensus 412 ~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~ 489 (724)
+..+++|++|+++++. .+| .+..+++|++|++++|.+..+|. +..+++|++|++++|. +..+|. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS--LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG--GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh--hccCCCCCE
Confidence 4678889999999999 554 58999999999999999999887 9999999999999994 677765 899999999
Q ss_pred EeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccccccc
Q 048789 490 LRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSL 569 (724)
Q Consensus 490 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l 569 (724)
|++.+|.... +..+..+++|+.|+++.+.+..++.+... .+|+.|.++++. +.... .+
T Consensus 117 L~L~~n~i~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~l-----~~L~~L~L~~N~-l~~~~--~l 174 (291)
T 1h6t_A 117 LSLEHNGISD--------------INGLVHLPQLESLYLGNNKITDITVLSRL-----TKLDTLSLEDNQ-ISDIV--PL 174 (291)
T ss_dssp EECTTSCCCC--------------CGGGGGCTTCCEEECCSSCCCCCGGGGGC-----TTCSEEECCSSC-CCCCG--GG
T ss_pred EECCCCcCCC--------------ChhhcCCCCCCEEEccCCcCCcchhhccC-----CCCCEEEccCCc-cccch--hh
Confidence 9999875321 24577889999999988777665322221 267777777653 33332 26
Q ss_pred ccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCc
Q 048789 570 ASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 570 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
..+++|+.|++++|.++.+ + .+ ..+++|+.|++++++
T Consensus 175 ~~l~~L~~L~L~~N~i~~l-~-~l--------~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDL-R-AL--------AGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCTTCCEEECCSSCCCBC-G-GG--------TTCTTCSEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCC-h-hh--------ccCCCCCEEECcCCc
Confidence 6777888888888777653 2 22 246778888887764
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=4.7e-12 Score=141.01 Aligned_cols=170 Identities=21% Similarity=0.224 Sum_probs=122.8
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
..++.|+.|++++|.+..++ .+..+++|+.|+|++|. .+|. +..|++|++|+|++|.+..+| .+..+.+|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 34577888888888876654 37888888999998888 5554 888888999999888888876 688888899999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccccc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQ 546 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~ 546 (724)
|++|. +..+|. +..|++|+.|++++|.... +..+..+++|+.|+++.+.+..+..+...
T Consensus 116 Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~--------------l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l---- 174 (605)
T 1m9s_A 116 LEHNG-ISDING--LVHLPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISDIVPLAGL---- 174 (605)
T ss_dssp CTTSC-CCCCGG--GGGCTTCSEEECCSSCCCC--------------CGGGGSCTTCSEEECCSSCCCCCGGGTTC----
T ss_pred ecCCC-CCCCcc--ccCCCccCEEECCCCccCC--------------chhhcccCCCCEEECcCCcCCCchhhccC----
Confidence 88884 566653 7888889999888764321 24567788888888887776654432111
Q ss_pred ccccCcEEeeccCCCCcccccccccccccceEEeecCCcce
Q 048789 547 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEE 587 (724)
Q Consensus 547 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 587 (724)
.+|+.|.|+++. +..+ ..+..+++|+.|+|++|.+..
T Consensus 175 -~~L~~L~Ls~N~-i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 175 -TKLQNLYLSKNH-ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -TTCCEEECCSSC-CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred -CCCCEEECcCCC-CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 267777777653 3333 256777888888888876654
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=2e-12 Score=135.86 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=165.8
Q ss_pred EEeecccccccChhhhhcCCCceEEEccCCC--CC-c----hhhhccc-cCCeeecCCCCcccc-chHHhcc-----ccC
Q 048789 397 LFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PL-L----FEISKVV-SLQHLDLSHSRIERL-PIEFKYL-----VNL 462 (724)
Q Consensus 397 L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l-p----~~i~~L~-~L~~L~L~~~~i~~L-p~~i~~L-----~~L 462 (724)
+.+++|.+....+.++...++|++|++++|. .. + ..+..++ +|++|+|++|.+... +..+..+ .+|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677788888888877777889999999999 33 3 6677888 999999999998855 5556665 999
Q ss_pred cEeecCCcccccccChhhh----cCC-CcCcEEeccccCCCcccccccccCCcccchHHhhcC-CCCCeEEEEEcchhh-
Q 048789 463 KCLNLEYTYGVLKIPPKVI----SNL-KILQTLRMYECATVPQARDSILFGDCRVLVEELLCL-EHLSVFTITLNNFHA- 535 (724)
Q Consensus 463 ~~L~l~~~~~~~~lp~~~i----~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~i~~~~~~~- 535 (724)
++|++++|. +...+...+ ..+ ++|++|++.+|..... ........+..+ ++|+.|+++.+.+..
T Consensus 83 ~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 83 TSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK--------SSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp CEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS--------CHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred cEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcH--------HHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 999999995 555544323 344 8999999998863221 011222335553 689999999887762
Q ss_pred ----hHHHhccccccccccCcEEeeccCCCCccccc----ccccc-cccceEEeecCCcceEEEccCCccccccccCCCC
Q 048789 536 ----LQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVF----SLASL-RHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPN 606 (724)
Q Consensus 536 ----~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~ 606 (724)
+....... ..+|+.|+++++. +...... .+..+ ++|++|++++|.++......+.. .+. ...++
T Consensus 154 ~~~~l~~~l~~~---~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~--~l~-~~~~~ 226 (362)
T 3goz_A 154 SSDELIQILAAI---PANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY--IFS-SIPNH 226 (362)
T ss_dssp CHHHHHHHHHTS---CTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH--HHH-HSCTT
T ss_pred HHHHHHHHHhcC---CccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH--HHh-cCCCC
Confidence 22222111 1278999998864 3333222 23344 59999999999887521111110 000 11368
Q ss_pred cceEEEecCcchhhhhccCCCCCcccccccCCCcccccceecccccc-------ccccccCCCCCCCCccEEeecCCC
Q 048789 607 LKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLERLILEELK-------NLKTIHSKALPFPCLKEMSVDGCP 677 (724)
Q Consensus 607 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~-------~L~~~~~~~~~~p~L~~L~i~~C~ 677 (724)
|+.|+|++|. +..... ..+......+++|+.|+|+++. .+..+......+++|+.|++++++
T Consensus 227 L~~L~Ls~N~-l~~~~~--------~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 227 VVSLNLCLNC-LHGPSL--------ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCEEECCSSC-CCCCCH--------HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ceEEECcCCC-CCcHHH--------HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 9999999875 221100 0111234568999999999864 233344444567788888887764
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=1.6e-11 Score=136.83 Aligned_cols=169 Identities=19% Similarity=0.223 Sum_probs=133.0
Q ss_pred hhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccChhhhcCCCcCcE
Q 048789 412 FQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQT 489 (724)
Q Consensus 412 ~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~ 489 (724)
+..+++|+.|+++++. .+| .+..|++|++|+|++|.+..+|. +..+.+|+.|+|++| .+..+|. +..|++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTT--STTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChh--hccCCCCCE
Confidence 5678899999999999 554 79999999999999999999887 999999999999999 4677774 899999999
Q ss_pred EeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccccccc
Q 048789 490 LRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSL 569 (724)
Q Consensus 490 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l 569 (724)
|++.+|... .+..+..+++|+.|+++.+.+..++.+... .+|+.|.|+++. +..+. .+
T Consensus 114 L~Ls~N~l~--------------~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l-----~~L~~L~Ls~N~-l~~~~--~l 171 (605)
T 1m9s_A 114 LSLEHNGIS--------------DINGLVHLPQLESLYLGNNKITDITVLSRL-----TKLDTLSLEDNQ-ISDIV--PL 171 (605)
T ss_dssp EECTTSCCC--------------CCGGGGGCTTCSEEECCSSCCCCCGGGGSC-----TTCSEEECCSSC-CCCCG--GG
T ss_pred EEecCCCCC--------------CCccccCCCccCEEECCCCccCCchhhccc-----CCCCEEECcCCc-CCCch--hh
Confidence 999987532 124578899999999998887766332221 278888888764 33332 27
Q ss_pred ccccccceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcc
Q 048789 570 ASLRHLQTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQD 617 (724)
Q Consensus 570 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~ 617 (724)
..+++|+.|+|++|.++.+ + .+ ..+++|+.|+|++|+.
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l-~-~l--------~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDL-R-AL--------AGLKNLDVLELFSQEC 209 (605)
T ss_dssp TTCTTCCEEECCSSCCCBC-G-GG--------TTCTTCSEEECCSEEE
T ss_pred ccCCCCCEEECcCCCCCCC-h-HH--------ccCCCCCEEEccCCcC
Confidence 7889999999999888763 2 22 2578899999988753
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=3.9e-12 Score=122.23 Aligned_cols=105 Identities=29% Similarity=0.397 Sum_probs=77.0
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hhccccCCeeecCCCCccccchH-HhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-ISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
.++|+.|++++|.+...++..|..+++|++|+++++. .+|.. +..+++|++|++++|.+..+|.. +..+.+|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 3567788888887777777777778888888888777 55543 56778888888888877777654 57778888888
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccC
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
+++| .+..+|...+..+++|++|++.+|.
T Consensus 107 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 107 LNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCC-cCcccCHhHhccCCcCCEEECCCCc
Confidence 8777 3566666656777888888887664
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=6e-11 Score=125.69 Aligned_cols=219 Identities=14% Similarity=0.051 Sum_probs=143.4
Q ss_pred CccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCC----CCC-CcEEEEEEeCCcC-CHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDT----PNS-FDFVIWIVVSKDL-QLAKI 223 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~~-f~~~~wv~v~~~~-~~~~~ 223 (724)
..++||+++++++.+++.. ...+.+.|+|++|+||||+|+.+++..... ... ....+|++..... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5789999999999877753 456799999999999999999999875210 011 3456788877766 88889
Q ss_pred HHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc--hhhc-cCCCCCCCCCCcEEEEecCChHH--
Q 048789 224 QEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD--LAQV-GLPVSSCASSSNKIVFTTREIEV-- 298 (724)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l-~~~~~~~~~g~s~iliTtr~~~v-- 298 (724)
+..++.++..................+.+.+..++.+|||||++.... .... ...+.....+ ..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~-~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDAN-ISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSC-EEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcc-eEEEEEECCCchHh
Confidence 999998883222112334456677788888877777999999976421 1111 1111111144 888888887532
Q ss_pred ------HhhccCccceeeccCChHHHHHHHHHHhCC--CCCCCCCChHHHHHHHHHHhC---CCCchH-HHHHHH--Hh-
Q 048789 299 ------CGQMEAHRSFKVECLGFDDAWKLFEEKVGR--DTLDTHPDIPELAEAVARECG---GLPLAL-ITVGRA--MA- 363 (724)
Q Consensus 299 ------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---g~Plai-~~~~~~--l~- 363 (724)
...+ ...+.+.+++.++..+++...+.. .....+ .+....+++.|+ |.|..+ ..+..+ +.
T Consensus 179 ~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 179 YMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1221 237899999999999999987632 111112 345677888887 888733 333322 22
Q ss_pred --cCCChhHHHHHHHHH
Q 048789 364 --SRKTPREWEHAIEVL 378 (724)
Q Consensus 364 --~~~~~~~w~~~~~~l 378 (724)
..-+.++++.+++..
T Consensus 254 ~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp SSSCCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHH
Confidence 224667777776554
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=2.1e-12 Score=132.45 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=94.9
Q ss_pred CcceEEEeecccccccChhhh--hcCCCceEEEccCCC---CCc----hhhhccccCCeeecCCCCccccc-hHHhcccc
Q 048789 392 PRLRTLFLSSNIFHRVNSDFF--QSMASLRVLKLSYSN---PLL----FEISKVVSLQHLDLSHSRIERLP-IEFKYLVN 461 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~--~~l~~Lr~L~l~~~~---~lp----~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~ 461 (724)
++|+.|++++|.+....+..+ ..+++|++|+++++. ..| ..+..+++|++|+|++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 569999999998877766666 889999999999998 222 34567999999999999988666 56889999
Q ss_pred CcEeecCCcccccc--cCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHH-hhcCCCCCeEEEEEcchh
Q 048789 462 LKCLNLEYTYGVLK--IPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEE-LLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 462 L~~L~l~~~~~~~~--lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~~L~~L~i~~~~~~ 534 (724)
|++|++++|..... ++. ..++.+++|++|++.+|.... ....... +..+++|+.|+++.+.+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET----------PTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC----------HHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc----------hHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 99999999853221 222 124688999999999875321 1111111 356677777776655544
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=2.5e-12 Score=136.49 Aligned_cols=208 Identities=21% Similarity=0.206 Sum_probs=146.2
Q ss_pred CCCCcceEEEeeccccc---ccChhh-------hhcCCCceEEEccCCC--C-----CchhhhccccCCeeecCCCCcc-
Q 048789 389 PVCPRLRTLFLSSNIFH---RVNSDF-------FQSMASLRVLKLSYSN--P-----LLFEISKVVSLQHLDLSHSRIE- 450 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~---~~~~~~-------~~~l~~Lr~L~l~~~~--~-----lp~~i~~L~~L~~L~L~~~~i~- 450 (724)
..+++|++|++++|.+. ...|.. +..+++|++|+|++|. . +|..+..+++|++|+|++|.+.
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 45789999999997533 222322 4789999999999998 3 6778999999999999999886
Q ss_pred ----ccchHHhcc---------ccCcEeecCCcccc-cccCh--hhhcCCCcCcEEeccccCCCcccccccccCCcccch
Q 048789 451 ----RLPIEFKYL---------VNLKCLNLEYTYGV-LKIPP--KVISNLKILQTLRMYECATVPQARDSILFGDCRVLV 514 (724)
Q Consensus 451 ----~Lp~~i~~L---------~~L~~L~l~~~~~~-~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 514 (724)
.++..+..+ ++|++|++++|... ..+|. ..+..+++|++|++.+|..... ......
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--------g~~~l~ 208 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--------GIEHLL 208 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh--------HHHHHH
Confidence 345556666 89999999999532 24442 2377899999999998853210 011123
Q ss_pred H-HhhcCCCCCeEEEEEcchh-----hhHHHhccccccccccCcEEeeccCCCCcccc----ccc--ccccccceEEeec
Q 048789 515 E-ELLCLEHLSVFTITLNNFH-----ALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGV----FSL--ASLRHLQTLHLTY 582 (724)
Q Consensus 515 ~-~L~~L~~L~~L~i~~~~~~-----~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~----~~l--~~~~~L~~L~l~~ 582 (724)
. .+..+++|+.|+++.+.+. .++..+... .+|+.|.++++. +..... ..+ .++++|++|++++
T Consensus 209 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~----~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW----PNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC----TTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC----CCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcC
Confidence 3 6778999999999988873 333333222 278999998865 333211 133 3389999999999
Q ss_pred CCcce----EEEccCCccccccccCCCCcceEEEecCc
Q 048789 583 NDLEE----IKIDNGGEVKRVRELSAPNLKRVEIENCQ 616 (724)
Q Consensus 583 ~~l~~----~~~~~~~~l~~L~~~~l~~L~~L~l~~c~ 616 (724)
|.++. ..|.++. ..+++|++|++++|.
T Consensus 284 n~i~~~g~~~l~~~l~-------~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 284 NEIELDAVRTLKTVID-------EKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCBHHHHHHHHHHHH-------HHCTTCCEEECTTSB
T ss_pred CcCCHHHHHHHHHHHH-------hcCCCceEEEccCCc
Confidence 98875 1233321 247899999999875
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=4.9e-12 Score=126.12 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=47.3
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeec
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNL 467 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 467 (724)
.+++|++|++++|.+..++ .+..+++|++|++++|. .+|. +..+++|++|++++|.+..+|.... .+|++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 3445555555555444332 24455555555555555 3333 5555555555555555554443222 45555555
Q ss_pred CCcccccccChhhhcCCCcCcEEecccc
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYEC 495 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~ 495 (724)
++| .+..+|. +..+++|++|++.+|
T Consensus 114 ~~N-~l~~~~~--l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 114 DNN-ELRDTDS--LIHLKNLEILSIRNN 138 (263)
T ss_dssp CSS-CCSBSGG--GTTCTTCCEEECTTS
T ss_pred cCC-ccCCChh--hcCcccccEEECCCC
Confidence 555 2334432 455555555555544
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=7.5e-12 Score=141.05 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=33.3
Q ss_pred CCcceEEEeecccccccChhh----hhcCCCceEEEccCCC-CCc-----hhhhccccCCeeecCCC-CccccchHHhcc
Q 048789 391 CPRLRTLFLSSNIFHRVNSDF----FQSMASLRVLKLSYSN-PLL-----FEISKVVSLQHLDLSHS-RIERLPIEFKYL 459 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~----~~~l~~Lr~L~l~~~~-~lp-----~~i~~L~~L~~L~L~~~-~i~~Lp~~i~~L 459 (724)
+++|++|++++|.+....+.. ...+++|++|+++++. .+. .-+..+++|++|++++| .+..+|..+.++
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 345555555555433222211 1234455555555543 111 11223455555555554 333444444445
Q ss_pred ccCcEeec
Q 048789 460 VNLKCLNL 467 (724)
Q Consensus 460 ~~L~~L~l 467 (724)
.+|+.|++
T Consensus 235 ~~L~~L~l 242 (594)
T 2p1m_B 235 PQLEELGT 242 (594)
T ss_dssp TTCSEEEC
T ss_pred CcceEccc
Confidence 55555543
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=8.1e-13 Score=148.97 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=36.8
Q ss_pred CcceEEEeecccccccChhhhh-cCCCceEEEccCCC-----CCchhhhccccCCeeecCCCCccc-----cchHHhccc
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQ-SMASLRVLKLSYSN-----PLLFEISKVVSLQHLDLSHSRIER-----LPIEFKYLV 460 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~-----~lp~~i~~L~~L~~L~L~~~~i~~-----Lp~~i~~L~ 460 (724)
++|+.|++++|.+.......+. .+++|++|++++|. .++..+.++++|++|+|++|.+.. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4555555555544333332232 45555555555553 133333355555555555554331 222222444
Q ss_pred cCcEeecCCc
Q 048789 461 NLKCLNLEYT 470 (724)
Q Consensus 461 ~L~~L~l~~~ 470 (724)
+|+.|++++|
T Consensus 185 ~L~~L~l~~~ 194 (594)
T 2p1m_B 185 SLVSLNISCL 194 (594)
T ss_dssp CCCEEECTTC
T ss_pred cCcEEEeccc
Confidence 5555555554
No 113
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=8.2e-11 Score=124.71 Aligned_cols=201 Identities=12% Similarity=0.111 Sum_probs=131.2
Q ss_pred CCccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
+..++||+.+++.+.+++.. .....+.|+|++|+||||||+.+++........-...+|++.....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999998873 45678999999999999999999987621111023567888766667888888888
Q ss_pred HHcCCCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccChh------chhhccCCCCC-CCCCCcEEEEecCChHHH
Q 048789 229 KKMGLFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWELV------DLAQVGLPVSS-CASSSNKIVFTTREIEVC 299 (724)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~-~~~g~s~iliTtr~~~v~ 299 (724)
.+++..... ...+..+....+.+.+. +++.+||+||++... .+..+...+.. ...+ ..+|+||+.....
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~-~~~I~~~~~~~~~ 176 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSK-ISFIGITNDVKFV 176 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC---EEEEEEESCGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCe-EEEEEEECCCChH
Confidence 877653221 23345666667777664 358999999997532 12222111111 1223 6677888766432
Q ss_pred hhcc-------CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhC---CCCchHH
Q 048789 300 GQME-------AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECG---GLPLALI 356 (724)
Q Consensus 300 ~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Plai~ 356 (724)
..+. ....+.+.+++.++..+++...+.... ....-..+....+++.++ |.|..+.
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 2221 114789999999999999998653211 011122456677777777 9998544
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=4.3e-11 Score=114.87 Aligned_cols=97 Identities=25% Similarity=0.276 Sum_probs=64.0
Q ss_pred eEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccchH-HhccccCcEeecCCc
Q 048789 395 RTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNLEYT 470 (724)
Q Consensus 395 r~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~ 470 (724)
+.++..++.+..++... .++|++|+++++. .+|. .+..+++|++|++++|.++.+|.. +..+.+|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45555565555554332 3467777777777 4444 356777777777777777777654 467777777777777
Q ss_pred ccccccChhhhcCCCcCcEEecccc
Q 048789 471 YGVLKIPPKVISNLKILQTLRMYEC 495 (724)
Q Consensus 471 ~~~~~lp~~~i~~l~~L~~L~l~~~ 495 (724)
. +..+|...+..+++|++|++.+|
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 87 Q-LQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred c-CCccCHhHhcCccCCCEEEcCCC
Confidence 3 56666655677777777777655
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=2.5e-11 Score=117.44 Aligned_cols=129 Identities=20% Similarity=0.242 Sum_probs=106.4
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchH-HhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l 467 (724)
+.|+.|++++|.+..+++..|..+++|++|+|+++. ..|..+..+++|++|+|++|.+..+|.. +..+.+|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 689999999999988888889999999999999998 4578899999999999999999999876 578999999999
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcch
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNF 533 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 533 (724)
++|. +..+++..+..+++|++|++.+|..... ....+..+++|+.|++..+.+
T Consensus 112 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANK-INCLRVDAFQDLHNLNLLSLYDNKLQTI------------AKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEEECCSSCE
T ss_pred CCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEE------------CHHHHhCCCCCCEEEeCCCCc
Confidence 9994 6777666689999999999998754321 112356678888888776654
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=5e-11 Score=113.26 Aligned_cols=132 Identities=15% Similarity=0.205 Sum_probs=108.2
Q ss_pred CCCCCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccc-cchHHhccc
Q 048789 385 FSESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIER-LPIEFKYLV 460 (724)
Q Consensus 385 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~i~~L~ 460 (724)
++....+++|++|++++|.+... ..+..+++|++|+++++. ..|..++.+++|++|++++|.+.. .|..++.++
T Consensus 59 l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 59 LTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136 (197)
T ss_dssp CTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred hHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence 44556789999999999976544 358899999999999998 368889999999999999999884 788899999
Q ss_pred cCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 461 NLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 461 ~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
+|++|++++|..+..+|. +..+++|++|++.+|.... +..+..+++|+.|++..+.+.
T Consensus 137 ~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~--------------~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD--------------YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC--------------CTTGGGCSSCCEEEECBC---
T ss_pred CCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC--------------hHHhccCCCCCEEEeeCcccC
Confidence 999999999965788874 8999999999999875321 225677889999998877654
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.19 E-value=3.6e-10 Score=119.80 Aligned_cols=220 Identities=15% Similarity=0.134 Sum_probs=140.7
Q ss_pred CCccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCC---CCCcEEEEEEeCCcCCHHHHHH
Q 048789 153 PATVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTP---NSFDFVIWIVVSKDLQLAKIQE 225 (724)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~ 225 (724)
+..++||+.+++.+.+++.. ...+.+.|+|++|+||||+|+.+++...... ..-...+|++.....+...+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 36799999999999998853 4567899999999999999999998762100 1123567888888888999999
Q ss_pred HHHHHcCCCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccChhch----hhc---cCCCCCC--CCCCcEEEEecC
Q 048789 226 GIAKKMGLFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWELVDL----AQV---GLPVSSC--ASSSNKIVFTTR 294 (724)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~----~~l---~~~~~~~--~~g~s~iliTtr 294 (724)
.++.+++.... ....+..+....+.+.+. +++.+|||||++..... +.+ ....... ..+ ..+|.||+
T Consensus 98 ~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~-~~~I~~t~ 175 (387)
T 2v1u_A 98 AIAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVW-VSLVGITN 175 (387)
T ss_dssp HHHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC------CEEEEECS
T ss_pred HHHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCce-EEEEEEEC
Confidence 99999975432 134446666777777773 46889999999764221 111 1111110 223 67777777
Q ss_pred ChHH--------HhhccCccceeeccCChHHHHHHHHHHhCC--CCCCCCCChHHHHHHHHHHhC---CCCchHH-HHHH
Q 048789 295 EIEV--------CGQMEAHRSFKVECLGFDDAWKLFEEKVGR--DTLDTHPDIPELAEAVARECG---GLPLALI-TVGR 360 (724)
Q Consensus 295 ~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---g~Plai~-~~~~ 360 (724)
.... ...+. ...+.+.+++.++...++...+.. ......+ +....+++.++ |.|..+. .+..
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6532 22211 146889999999999999987532 1112222 34567777787 9995333 2222
Q ss_pred HH--h---c--CCChhHHHHHHHHH
Q 048789 361 AM--A---S--RKTPREWEHAIEVL 378 (724)
Q Consensus 361 ~l--~---~--~~~~~~w~~~~~~l 378 (724)
+. . + .-+.++++.++...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 21 1 1 13566676666544
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=2.8e-11 Score=133.29 Aligned_cols=177 Identities=19% Similarity=0.167 Sum_probs=130.8
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 469 (724)
.+|+.|++++|.+..+++.. +++|++|++++|. .+| ..+++|++|++++|.+..+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 47899999999888766544 3789999999998 777 568999999999999999988 655 999999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVS 549 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 549 (724)
|. +..+|. .+++|++|++++|.... +| . .+++|+.|+++.+.+..++. +. .+
T Consensus 130 N~-l~~lp~----~l~~L~~L~Ls~N~l~~-lp------------~---~l~~L~~L~Ls~N~L~~lp~-l~------~~ 181 (571)
T 3cvr_A 130 NQ-LTMLPE----LPALLEYINADNNQLTM-LP------------E---LPTSLEVLSVRNNQLTFLPE-LP------ES 181 (571)
T ss_dssp SC-CSCCCC----CCTTCCEEECCSSCCSC-CC------------C---CCTTCCEEECCSSCCSCCCC-CC------TT
T ss_pred Cc-CCCCCC----cCccccEEeCCCCccCc-CC------------C---cCCCcCEEECCCCCCCCcch-hh------CC
Confidence 84 677886 68899999999775321 11 1 36788889988888776554 21 37
Q ss_pred cCcEEeeccCCCCccccccccccccc-------ceEEeecCCcceEEEccCCccccccccCCCCcceEEEecCcchh
Q 048789 550 TPSLCLSHFNNSKSLGVFSLASLRHL-------QTLHLTYNDLEEIKIDNGGEVKRVRELSAPNLKRVEIENCQDME 619 (724)
Q Consensus 550 L~~L~l~~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~l~~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~ 619 (724)
|+.|+++++. +..++. +.. +| +.|++++|.++.+ |.++. .+++|+.|+|++++-..
T Consensus 182 L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~--------~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 182 LEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENRITHI-PENIL--------SLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCEEECCSSC-CSSCCC--CC----------CCEEEECCSSCCCCC-CGGGG--------GSCTTEEEECCSSSCCH
T ss_pred CCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCcceec-CHHHh--------cCCCCCEEEeeCCcCCC
Confidence 8888888753 443332 222 56 9999999988874 55543 47889999998876433
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=5.2e-11 Score=115.19 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=76.0
Q ss_pred eEEEeecccccccChhhhhcCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCCcccc-chHHhccccCcEeecCCc
Q 048789 395 RTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKCLNLEYT 470 (724)
Q Consensus 395 r~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~~ 470 (724)
+.++++++.+..++... .+.|+.|+++++. .+| ..+..+++|++|+|++|.+..+ |..+..+.+|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777777666543 2578888998888 444 3678888899999998888866 667888888999999888
Q ss_pred ccccccChhhhcCCCcCcEEeccccC
Q 048789 471 YGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 471 ~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
.+..+|.+.+..+++|++|++.+|.
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 91 -KITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCCccCHhHccCCCCCCEEECCCCC
Confidence 4678887767888888888888764
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=5.9e-11 Score=115.64 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=103.1
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccchH-HhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
.++|+.|++++|.+....+..|..+++|++|+|+++. .+|. .+..+++|++|+|++|.++.+|.. +..+.+|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 3789999999999888888888999999999999998 6664 468899999999999999988765 57899999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcch
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNF 533 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 533 (724)
+++| .+..+|.. +..+++|++|++.+|.... + ....+..+++|+.|.+..+.+
T Consensus 119 Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~-~-----------~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 119 MCCN-KLTELPRG-IERLTHLTHLALDQNQLKS-I-----------PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCC-C-----------CTTTTTTCTTCCEEECTTSCB
T ss_pred ccCC-cccccCcc-cccCCCCCEEECCCCcCCc-c-----------CHHHHhCCCCCCEEEeeCCCc
Confidence 9988 47788887 7899999999998775321 1 112356677888887765543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=3.1e-11 Score=111.46 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=104.1
Q ss_pred CCcceEEEeeccccc-ccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccc-cchHHhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIER-LPIEFKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~i~~L~~L~~L~ 466 (724)
.++|+.|++++|.+. ...+..+..+++|++|++++|. .+ ..++.+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 478999999999987 3445557899999999999998 45 788999999999999999987 888888899999999
Q ss_pred cCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 467 LEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 467 l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
+++| .+..+|. ..+..+++|++|++.+|..... .......+..+++|+.|++..+...
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~---------~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL---------NDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS---------TTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch---------HHHHHHHHHhCccCcEecCCCCChh
Confidence 9999 4677663 3489999999999998753211 0111235677888888877766554
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=5.8e-11 Score=107.17 Aligned_cols=128 Identities=17% Similarity=0.235 Sum_probs=100.1
Q ss_pred CCCcceEEEeeccccc-ccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccc-cchHHhccccCcEe
Q 048789 390 VCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIER-LPIEFKYLVNLKCL 465 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~i~~L~~L~~L 465 (724)
..++|+.|++++|.+. ...+..+..+++|++|++++|. .+ ..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3478999999999987 3445568999999999999999 45 788999999999999999997 88888889999999
Q ss_pred ecCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEE
Q 048789 466 NLEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTI 528 (724)
Q Consensus 466 ~l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i 528 (724)
++++|. +..+|. ..++.+++|++|++.+|..... .......+..+++|+.|++
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~---------~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNL---------NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGS---------TTHHHHHHHHCTTCCEETT
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccch---------HHHHHHHHHHCCCcccccC
Confidence 999995 666652 3389999999999998753211 0111134666777776643
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.14 E-value=1.6e-09 Score=114.85 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=134.5
Q ss_pred CccccchhhHHHHHHHhhc----CCce--EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME----EQMG--IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGI 227 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 227 (724)
+.++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++... ... -...++++.+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK-DKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT-TSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh-hhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 5799999999999998865 3334 899999999999999999999872 111 1356778877777888999999
Q ss_pred HHHcCCCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccCh--hchhhccCCCCCCC----CCCcEEEEecCChHHH
Q 048789 228 AKKMGLFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWEL--VDLAQVGLPVSSCA----SSSNKIVFTTREIEVC 299 (724)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~~~~~~----~g~s~iliTtr~~~v~ 299 (724)
+.+++..... ...+.....+.+...+. +++.++||||++.. .....+...+.... .+ ..+|++|+.....
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~-~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR-IALVIVGHNDAVL 172 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC-EEEEEEESSTHHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC-EEEEEEECCchHH
Confidence 9988654321 23355666666666664 56889999999763 22223322221111 24 6788888776443
Q ss_pred hhcc-------CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHh---------CCCCchHHHH
Q 048789 300 GQME-------AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVAREC---------GGLPLALITV 358 (724)
Q Consensus 300 ~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~g~Plai~~~ 358 (724)
..+. ....+.+.+++.++..+++...+..... ...--.+....+++.+ +|.|..+..+
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 2221 1135899999999999999887643110 0112245678899999 7887654433
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.13 E-value=1.6e-10 Score=112.59 Aligned_cols=110 Identities=23% Similarity=0.316 Sum_probs=99.4
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hhccccCCeeecCCCCccccchHHhccccCcE
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-ISKVVSLQHLDLSHSRIERLPIEFKYLVNLKC 464 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~ 464 (724)
+..+++|+.|++++|.+..+++..|..+++|++|+|++|. .+|.. +..+++|++|+|++|.+..+|..+..+.+|++
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSE
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCE
Confidence 4567899999999999988888889999999999999999 66654 68899999999999999999999999999999
Q ss_pred eecCCcccccccChhhhcCCCcCcEEeccccCCC
Q 048789 465 LNLEYTYGVLKIPPKVISNLKILQTLRMYECATV 498 (724)
Q Consensus 465 L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 498 (724)
|++++| .+..+|...+..+++|++|++.+|+..
T Consensus 140 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 140 LALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred EECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999 578888777899999999999988654
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=112.29 Aligned_cols=129 Identities=21% Similarity=0.288 Sum_probs=94.6
Q ss_pred CcceEEEeecccccccC-hhhhhcCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCCccccchH-HhccccCcEee
Q 048789 392 PRLRTLFLSSNIFHRVN-SDFFQSMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
+.++.|++++|.+...+ ...|..+++|++|+++++. .++ ..+..+++|++|+|++|.+..+|.. +..+.+|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 45678888888877764 3557888888888888887 333 4688888888888888888877654 77888888888
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcch
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNF 533 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 533 (724)
+++|. +..+++..+..+++|++|++.+|.... .....+..+++|+.|+++.+.+
T Consensus 112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITT------------VAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCC------------BCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCc-CCeECHhHcCCCccCCEEECCCCcCCE------------ECHHHhcCCCCCCEEEecCcCC
Confidence 88884 566655457888888888888765322 1123456677788887776554
No 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=7.8e-10 Score=108.94 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=114.2
Q ss_pred CccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
..++||+..++.+.+++.... .+.+.|+|++|+||||+|+.+++... ....+.. ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC------CCCcccHH-HHHHhccCC
Confidence 458999999999999987654 45899999999999999999998772 1111100 00000000 001110000
Q ss_pred CCccc--cCCcCHHHHHHHHHHHH-----ccCceEEEeccccC--hhchhhccCCCCCCCCCCcEEEEecCChHHH-h-h
Q 048789 233 LFNES--WQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWE--LVDLAQVGLPVSSCASSSNKIVFTTREIEVC-G-Q 301 (724)
Q Consensus 233 ~~~~~--~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~-~-~ 301 (724)
...-. ............+.+.+ .+++.++|+||++. ...+..+...+.....+ ..+|+||+..... . .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~-~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT-EEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc-eEEEEEeCChHhCCHHH
Confidence 00000 00001111111222221 34679999999965 23344443333333344 7888888765421 1 1
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAM 362 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 362 (724)
......+.+.+++.++..+++...+....... -.+....|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12235788999999999999998875432111 14567889999999999888765443
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=9.5e-11 Score=122.82 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=65.9
Q ss_pred CcceEEEeecccccccChhhhh-cCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCCccccch-HHhccccCcEee
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQ-SMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLN 466 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~ 466 (724)
+.++.|++++|.+...++..|. .+++|++|+|+++. .++ ..+..+++|++|+|++|.+..+|. .+..+.+|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3466677777766666666565 66677777777666 333 356666777777777776666654 356667777777
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccC
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
|++|. +..+++..+..+++|++|++.+|.
T Consensus 119 L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 119 LYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-ccEECHHHhCCcccCCEEECCCCc
Confidence 76663 455544446667777777766553
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=2.2e-10 Score=106.51 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=107.2
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCchhhhccccCCeeecCCCCccccchHH-hccccCcEe
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLLFEISKVVSLQHLDLSHSRIERLPIEF-KYLVNLKCL 465 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~L 465 (724)
...+.+|+.|++++|.+..+ +......++|++|++++|. .-.+.++.+++|++|++++|.+..+|..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 45678999999999998766 4434444599999999999 33368899999999999999999998765 899999999
Q ss_pred ecCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhh
Q 048789 466 NLEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHAL 536 (724)
Q Consensus 466 ~l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~ 536 (724)
++++|. +..+|. ..+..+++|++|++.+|.... ++ ......+..+++|+.|+++.+.....
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~--------~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN-KK--------HYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG-ST--------THHHHHHHHCTTCSEETTEECCHHHH
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCC-cH--------hHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999994 677886 238899999999999886321 11 11122467888999998887776543
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=2.2e-10 Score=114.04 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=130.1
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
+.++..+.+.++.+...+ .+..+++|++|+++++. .+| .+..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 345556667777666554 37889999999999998 666 78999999999999999999987 9999999999999
Q ss_pred CcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccccccc
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYV 548 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 548 (724)
+| .+..+|. +.. ++|++|++.+|.... +..+..+++|+.|+++.+.+..++.+... .
T Consensus 94 ~N-~l~~l~~--~~~-~~L~~L~L~~N~l~~--------------~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l-----~ 150 (263)
T 1xeu_A 94 RN-RLKNLNG--IPS-ACLSRLFLDNNELRD--------------TDSLIHLKNLEILSIRNNKLKSIVMLGFL-----S 150 (263)
T ss_dssp SS-CCSCCTT--CCC-SSCCEEECCSSCCSB--------------SGGGTTCTTCCEEECTTSCCCBCGGGGGC-----T
T ss_pred CC-ccCCcCc--ccc-CcccEEEccCCccCC--------------ChhhcCcccccEEECCCCcCCCChHHccC-----C
Confidence 99 4677876 444 999999999875321 23578899999999998888776533222 2
Q ss_pred ccCcEEeeccCCCCcccccccccccccceEEeecCCcceE
Q 048789 549 STPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEI 588 (724)
Q Consensus 549 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 588 (724)
+|+.|.++++. +... ..+..+++|+.|++++|.+...
T Consensus 151 ~L~~L~L~~N~-i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 151 KLEVLDLHGNE-ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCEEECTTSC-CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCEEECCCCc-Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 78888888754 3333 4678899999999999877653
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.06 E-value=8.3e-11 Score=123.26 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=112.1
Q ss_pred eEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hh-ccccCCeeecCCCCccccch-HHhccccCcEeecCC
Q 048789 395 RTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-IS-KVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNLEY 469 (724)
Q Consensus 395 r~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~-~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~ 469 (724)
++++++++.+..++... ...+++|+|+++. .++.. +. .+.+|++|+|++|.+..+|. .+..+.+|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 67888888887776543 3458999999998 55544 55 89999999999999998875 589999999999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccccccc
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVS 549 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 549 (724)
|. +..+|...+..+++|++|++.+|.... .....+..+.+|+.|+++.+.+..++...
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--------- 155 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLYNNHIVV------------VDRNAFEDMAQLQKLYLSQNQISRFPVEL--------- 155 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSCCCE------------ECTTTTTTCTTCCEEECCSSCCCSCCGGG---------
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECCCCcccE------------ECHHHhCCcccCCEEECCCCcCCeeCHHH---------
Confidence 94 788888778999999999999876432 11234566777877777766554322100
Q ss_pred cCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEcc
Q 048789 550 TPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDN 592 (724)
Q Consensus 550 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 592 (724)
+..+..+++|+.|+|++|.++.+.+..
T Consensus 156 ----------------~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 156 ----------------IKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp ----------------TC----CTTCCEEECCSSCCCCCCHHH
T ss_pred ----------------hcCcccCCcCCEEECCCCCCCccCHHH
Confidence 001145677888888887777654333
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.06 E-value=1.6e-09 Score=104.91 Aligned_cols=184 Identities=14% Similarity=0.115 Sum_probs=113.5
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC-cEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF-DFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhc
Confidence 45899999999999999877666699999999999999999998752 1111 12333443333333222222211111
Q ss_pred CCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChHH-Hh-hccCccce
Q 048789 233 LFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIEV-CG-QMEAHRSF 308 (724)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~v-~~-~~~~~~~~ 308 (724)
... ...+++.++|+||++.. ...+.+...+.....+ .++|+||+.... .. .......+
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~-~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC-CeEEEEeCChhhcCHHHHHhCcee
Confidence 000 00257889999999763 2233333222222344 788888876532 11 11122378
Q ss_pred eeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHH
Q 048789 309 KVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGR 360 (724)
Q Consensus 309 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 360 (724)
.+.+++.++..+++.+.+....... -.+....+++.++|.|..+..+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999998774322111 145677889999999996554433
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=7.6e-11 Score=134.74 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=66.9
Q ss_pred cChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCcccccccChhhhcCC
Q 048789 407 VNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNL 484 (724)
Q Consensus 407 ~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l 484 (724)
.++..|..+..|++|+|+++. .+|..+..+.+|++|+|++|.+..+|..+++|.+|++|+|++|. +..+|.. ++.|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCC
Confidence 344556666666777776666 66666666666777777766666666666666677777776663 4566665 6666
Q ss_pred CcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 485 KILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 485 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
++|++|++.+|... ..+..+..|++|+.|+++.+.+.
T Consensus 293 ~~L~~L~L~~N~l~-------------~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-------------TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTCSEEECCSSCCC-------------CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCEEECCCCCCC-------------ccChhhhcCCCccEEeCCCCccC
Confidence 66777766655321 12223555666666666655554
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.06 E-value=3.5e-10 Score=109.33 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=96.5
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCCcccc-chHHhccccCc
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSRIERL-PIEFKYLVNLK 463 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~ 463 (724)
+..+++|+.|++++|.+..+++..|..+++|++|+|+++. .+| ..+..+++|++|+|++|.+..+ |..+..+.+|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 3567899999999999999988889999999999999999 454 4589999999999999999977 66789999999
Q ss_pred EeecCCcccccccChhhhcCCCcCcEEeccccCCC
Q 048789 464 CLNLEYTYGVLKIPPKVISNLKILQTLRMYECATV 498 (724)
Q Consensus 464 ~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 498 (724)
+|++++|. +..+++..+..+++|++|++.+|...
T Consensus 133 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 133 LLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999994 67775555999999999999988644
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=7.8e-12 Score=138.42 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=104.8
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC----------------CCchhhhccccCCeee-cCCCCccc
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN----------------PLLFEISKVVSLQHLD-LSHSRIER 451 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~----------------~lp~~i~~L~~L~~L~-L~~~~i~~ 451 (724)
..++.|+.|++++|.+..+ |..+..+++|+.|+++++. ..|..++.|.+|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 4467888888888887654 4557888888888875542 3455677777777777 55555544
Q ss_pred cch------HHhcc--ccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCC
Q 048789 452 LPI------EFKYL--VNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHL 523 (724)
Q Consensus 452 Lp~------~i~~L--~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 523 (724)
|+. .+..+ ..|++|++++| .+..+|. ++.+++|++|++++|... ..+..++.+++|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L 488 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLR-------------ALPPALAALRCL 488 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCC-------------CCCGGGGGCTTC
T ss_pred hhhhhhhcccccccCccCceEEEecCC-CCCCCcC--ccccccCcEeecCccccc-------------ccchhhhcCCCC
Confidence 443 12222 25778888877 4666775 777888888888766422 223346667777
Q ss_pred CeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccc-ccccccccccceEEeecCCcce
Q 048789 524 SVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLG-VFSLASLRHLQTLHLTYNDLEE 587 (724)
Q Consensus 524 ~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~ 587 (724)
+.|+++.+.+..++.+... .+|+.|.++++. +..+. ...+..+++|+.|++++|.+++
T Consensus 489 ~~L~Ls~N~l~~lp~l~~l-----~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 489 EVLQASDNALENVDGVANL-----PRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CEEECCSSCCCCCGGGTTC-----SSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CEEECCCCCCCCCcccCCC-----CCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 7777766655544311111 144445554432 22222 2345555666666666665554
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=4.6e-10 Score=101.20 Aligned_cols=102 Identities=27% Similarity=0.253 Sum_probs=90.5
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccc--hHHhccccCc
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLP--IEFKYLVNLK 463 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp--~~i~~L~~L~ 463 (724)
..+++|+.|++++|.+... ..+..+++|++|++++|. . +|..++.+++|++|++++|.+..+| ..++.+++|+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 6679999999999998776 568999999999999999 4 8888888999999999999999876 7899999999
Q ss_pred EeecCCcccccccCh---hhhcCCCcCcEEecc
Q 048789 464 CLNLEYTYGVLKIPP---KVISNLKILQTLRMY 493 (724)
Q Consensus 464 ~L~l~~~~~~~~lp~---~~i~~l~~L~~L~l~ 493 (724)
+|++++|. +..+|. ..+..+++|++|+++
T Consensus 117 ~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 99999994 677776 558999999999875
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=4.3e-10 Score=103.69 Aligned_cols=106 Identities=25% Similarity=0.239 Sum_probs=93.8
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccc--hHHhccccCc
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLP--IEFKYLVNLK 463 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp--~~i~~L~~L~ 463 (724)
..+++|++|++++|.+... ..+..+++|++|++++|. . +|..+..+++|++|++++|.+..+| ..+..+++|+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 5678999999999998776 568899999999999999 4 7888888999999999999999887 6899999999
Q ss_pred EeecCCcccccccCh---hhhcCCCcCcEEeccccCC
Q 048789 464 CLNLEYTYGVLKIPP---KVISNLKILQTLRMYECAT 497 (724)
Q Consensus 464 ~L~l~~~~~~~~lp~---~~i~~l~~L~~L~l~~~~~ 497 (724)
+|++++|. +..+|. ..+..+++|++|++.+|..
T Consensus 124 ~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 124 SLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99999994 677776 4589999999999998753
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=7.6e-10 Score=122.47 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=85.1
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecCCc
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYT 470 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~ 470 (724)
.|++|++++|.++.++ . |..+++|++|+|++|. .+|..++.|++|++|+|++|.++.+| .++.|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCc-C-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 5888999999887765 3 8889999999999988 88889999999999999999998888 8889999999999988
Q ss_pred cccccc--ChhhhcCCCcCcEEeccccCC
Q 048789 471 YGVLKI--PPKVISNLKILQTLRMYECAT 497 (724)
Q Consensus 471 ~~~~~l--p~~~i~~l~~L~~L~l~~~~~ 497 (724)
. +..+ |.. ++.|++|++|++.+|..
T Consensus 519 ~-l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 R-LQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp C-CCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred C-CCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 4 5666 655 88999999999987753
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.00 E-value=2.2e-10 Score=126.15 Aligned_cols=170 Identities=18% Similarity=0.169 Sum_probs=128.8
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
+++|+.|++++|.+..++ ..+++|++|++++|. .+|. ++. +|++|+|++|.+..+|. .+.+|++|+++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 478999999999988665 457899999999999 7887 665 99999999999999998 78999999999
Q ss_pred CcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhccccc--c
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCML--Q 546 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l--~ 546 (724)
+|. +..+|. .+++|++|++.+|.... +|. +. ++|+.|+++.+.+..++. +.. .+ .
T Consensus 149 ~N~-l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-------------l~--~~L~~L~Ls~N~L~~lp~-~~~-~L~~~ 205 (571)
T 3cvr_A 149 NNQ-LTMLPE----LPTSLEVLSVRNNQLTF-LPE-------------LP--ESLEALDVSTNLLESLPA-VPV-RNHHS 205 (571)
T ss_dssp SSC-CSCCCC----CCTTCCEEECCSSCCSC-CCC-------------CC--TTCCEEECCSSCCSSCCC-CC-------
T ss_pred CCc-cCcCCC----cCCCcCEEECCCCCCCC-cch-------------hh--CCCCEEECcCCCCCchhh-HHH-hhhcc
Confidence 995 677886 57899999999885322 221 22 789999999888876665 211 11 0
Q ss_pred ccccCcEEeeccCCCCcccccccccccccceEEeecCCcceEEEccCCc
Q 048789 547 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLEEIKIDNGGE 595 (724)
Q Consensus 547 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 595 (724)
...|+.|+++++ .+..++. .+..+++|+.|++++|.+++..|..+..
T Consensus 206 ~~~L~~L~Ls~N-~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 206 EETEIFFRCREN-RITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp --CCEEEECCSS-CCCCCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cccceEEecCCC-cceecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 012288888875 3444443 3556999999999999988766666544
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=1.4e-09 Score=102.72 Aligned_cols=98 Identities=24% Similarity=0.284 Sum_probs=57.1
Q ss_pred eEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccch-HHhccccCcEeecCCcc
Q 048789 395 RTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNLEYTY 471 (724)
Q Consensus 395 r~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~~ 471 (724)
++++++++.+..++... .+.|++|+++++. .+|..+..+++|++|+|++|.+..++. .+..+.+|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 35555555555544332 2356666666666 566666666666666666666665543 35666666666666663
Q ss_pred cccccChhhhcCCCcCcEEeccccC
Q 048789 472 GVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 472 ~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
+..+|+..+..+++|++|++.+|.
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCC
Confidence 455555446666666666666553
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=1.3e-09 Score=101.41 Aligned_cols=104 Identities=25% Similarity=0.342 Sum_probs=62.6
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hhccccCCeeecCCCCccccchH-HhccccCcEeec
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-ISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNL 467 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l 467 (724)
+.|+.|++++|.+...++..|..+++|++|+++++. .+|.. +..+++|++|++++|.+..+|.. +..+.+|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 456666666666655555556666666666666666 44433 45666666666666666655544 456666666666
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccC
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
++| .+..+|...+..+++|++|++.+|.
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 666 3455555544566666666666554
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=5.2e-10 Score=127.85 Aligned_cols=110 Identities=27% Similarity=0.243 Sum_probs=98.7
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEe
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCL 465 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 465 (724)
+..++.|+.|+|++|.+..+++..+ .+++|++|+|++|. .+|..|+.|++|++|+|++|.+..+|..+++|.+|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 4567899999999999887766644 89999999999999 89999999999999999999999999999999999999
Q ss_pred ecCCcccccccChhhhcCCCcCcEEeccccCCCcc
Q 048789 466 NLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQ 500 (724)
Q Consensus 466 ~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~ 500 (724)
+|++| .+..+|.. |+.|++|++|++.+|.....
T Consensus 299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp ECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred ECCCC-CCCccChh-hhcCCCccEEeCCCCccCCC
Confidence 99999 57899988 99999999999999876543
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=1.5e-09 Score=102.38 Aligned_cols=105 Identities=24% Similarity=0.308 Sum_probs=91.6
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCCccccch-HHhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~ 466 (724)
.+.|+.|++++|.+..++ ..|..+++|++|+++++. .++ ..+..+++|++|+|++|.+..+|. .+..+.+|++|+
T Consensus 30 ~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 368999999999988666 568999999999999999 554 568999999999999999998875 588999999999
Q ss_pred cCCcccccccChhhhcCCCcCcEEeccccCC
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMYECAT 497 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~ 497 (724)
+++| .+..+|.+.+..+++|++|++.+|+.
T Consensus 109 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 109 LHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999 47888887788999999999998764
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.96 E-value=1.1e-09 Score=103.49 Aligned_cols=103 Identities=24% Similarity=0.318 Sum_probs=49.8
Q ss_pred cceEEEeecccccccChh-hhhcCCCceEEEccCCC--C-CchhhhccccCCeeecCCCCccccchH-HhccccCcEeec
Q 048789 393 RLRTLFLSSNIFHRVNSD-FFQSMASLRVLKLSYSN--P-LLFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNL 467 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~--~-lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l 467 (724)
.++.|++++|.+...++. .|..+++|++|+++++. . .|..+..+++|++|+|++|.+..+|.. +..+.+|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555554444432 34555555555555555 2 244455555555555555555544332 445555555555
Q ss_pred CCcccccccChhhhcCCCcCcEEeccccC
Q 048789 468 EYTYGVLKIPPKVISNLKILQTLRMYECA 496 (724)
Q Consensus 468 ~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 496 (724)
++|. +..+++..+..+++|++|++.+|.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 5553 333322224555555555555443
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=1.1e-09 Score=103.47 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=98.9
Q ss_pred eEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh--hhccccCCeeecCCCCcccc-chHHhccccCcEeecCC
Q 048789 395 RTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE--ISKVVSLQHLDLSHSRIERL-PIEFKYLVNLKCLNLEY 469 (724)
Q Consensus 395 r~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~--i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~ 469 (724)
++++++++.+..++...+ .+|++|+++++. .+|.. ++.+++|++|+|++|.+..+ |..+..+.+|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999998877766433 389999999999 56653 89999999999999999977 67899999999999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
|. +..++...+..+++|++|++++|..... ....+..+++|+.|+++.+.+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NK-IKEISNKMFLGLHQLKTLNLYDNQISCV------------MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CC-CCEECSSSSTTCTTCCEEECCSSCCCEE------------CTTSSTTCTTCCEEECTTCCBC
T ss_pred Cc-CCccCHHHhcCCCCCCEEECCCCcCCee------------CHHHhhcCCCCCEEEeCCCCcc
Confidence 94 6777776688999999999998764321 2234566788888887765543
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=1.2e-09 Score=101.65 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=89.8
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhh-hccccCCeeecCCCCccccch--HHhccccCcEee
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEI-SKVVSLQHLDLSHSRIERLPI--EFKYLVNLKCLN 466 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i-~~L~~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~ 466 (724)
++|+.|++++|.+... ..|..+++|++|++++|. .+|..+ +.+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 3899999999998776 458899999999999999 666555 899999999999999999997 789999999999
Q ss_pred cCCcccccccChh---hhcCCCcCcEEeccccC
Q 048789 467 LEYTYGVLKIPPK---VISNLKILQTLRMYECA 496 (724)
Q Consensus 467 l~~~~~~~~lp~~---~i~~l~~L~~L~l~~~~ 496 (724)
+++|. +..+|.. .+..+++|++|++..|.
T Consensus 120 l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99995 6677764 58999999999998765
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=1.6e-10 Score=109.90 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=96.9
Q ss_pred cceEEEeecc--cccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEeecC
Q 048789 393 RLRTLFLSSN--IFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLE 468 (724)
Q Consensus 393 ~Lr~L~l~~~--~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 468 (724)
.++...+.++ .+..+ +..|..+++|++|+++++. .+| .+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l-~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCC-HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhh-hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3444444443 13222 2368899999999999988 777 8999999999999999999999888889999999999
Q ss_pred CcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhh
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHA 535 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~ 535 (724)
+| .+..+| . +..+++|++|++.+|.... ...+..+..+++|+.|++..+.+..
T Consensus 102 ~N-~l~~l~-~-~~~l~~L~~L~l~~N~i~~-----------~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 102 YN-QIASLS-G-IEKLVNLRVLYMSNNKITN-----------WGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EE-ECCCHH-H-HHHHHHSSEEEESEEECCC-----------HHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CC-cCCcCC-c-cccCCCCCEEECCCCcCCc-----------hhHHHHHhcCCCCCEEEecCCcccc
Confidence 98 467777 3 8899999999999775321 0122467788899999988776644
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=9.6e-09 Score=105.76 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc-EEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD-FVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+. ..++++.+.....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~------------ 86 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGI------------ 86 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSH------------
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccCh------------
Confidence 46899999999999999887665699999999999999999998851 11111 2333333322222
Q ss_pred CCccccCCcCHHHHHHHHHHHH-------ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChHH-Hhh-
Q 048789 233 LFNESWQSKGLEEKANKIFKIL-------SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIEV-CGQ- 301 (724)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~v-~~~- 301 (724)
+...+.+.... .+++.++|+||++.. ...+.+...+.....+ +++|++|+...- ...
T Consensus 87 -----------~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 87 -----------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS-TRFAFACNQSNKIIEPL 154 (323)
T ss_dssp -----------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT-EEEEEEESCGGGSCHHH
T ss_pred -----------HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCC-ceEEEEeCChhhchhHH
Confidence 11222222211 346889999999763 2333333222222334 778887766432 111
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
......+.+.+++.++..+++...+....... -.+....|++.|+|.|..+.
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~ 206 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAI 206 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 12234789999999999999988764322111 13557889999999996543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=4.4e-09 Score=97.32 Aligned_cols=101 Identities=21% Similarity=0.245 Sum_probs=85.5
Q ss_pred ceEEEeecccccccChhhhhcCCCceEEEccCCC--CC-chhhhccccCCeeecCCCCccccchH-HhccccCcEeecCC
Q 048789 394 LRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PL-LFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNLEY 469 (724)
Q Consensus 394 Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~ 469 (724)
-+.+++++|.+..++... .++|++|+|+++. .+ |..+..+++|++|+|++|.+..+|.. +..+.+|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367899999887776653 3789999999999 55 66789999999999999999999876 48999999999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCC
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATV 498 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 498 (724)
| .+..+|.+.+..+++|++|++.+|...
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8 578888877899999999999987643
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=2.8e-10 Score=108.08 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=103.0
Q ss_pred CCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccchHHhccccCcEee
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLN 466 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 466 (724)
..+++|++|++++|.+..++ .+..+++|++|++++|. .+|..+..+++|++|++++|.+..+| .+..+++|++|+
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred hcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 34689999999999987765 68999999999999999 89988889999999999999999988 799999999999
Q ss_pred cCCcccccccCh-hhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEE
Q 048789 467 LEYTYGVLKIPP-KVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFT 527 (724)
Q Consensus 467 l~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 527 (724)
+++|. +..+|. ..+..+++|++|++.+|......|... .........+..+++|+.|+
T Consensus 122 l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~--~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN--ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT--THHHHHHHHHHHCSSCSEEC
T ss_pred CCCCc-CCchhHHHHHhcCCCCCEEEecCCcccccccccc--chHHHHHHHHHhCCCcEEEC
Confidence 99994 666664 348999999999999875322111100 00011123366777777765
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=5.9e-09 Score=96.09 Aligned_cols=102 Identities=24% Similarity=0.259 Sum_probs=85.8
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC--CC-chhhhccccCCeeecCCCCccccchH-HhccccCcEeecC
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PL-LFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNLE 468 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~ 468 (724)
..+++++++|.+..++... .+.|++|+|+++. .+ |..+..+.+|++|+|++|.+..+|.. +..+.+|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999888776553 3788999999998 55 66789999999999999999998876 5899999999999
Q ss_pred CcccccccChhhhcCCCcCcEEeccccCCC
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYECATV 498 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 498 (724)
+| .+..+|.+.+..+++|++|++.+|...
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 98 478888877889999999999987643
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.77 E-value=1.9e-08 Score=93.46 Aligned_cols=125 Identities=22% Similarity=0.221 Sum_probs=98.9
Q ss_pred ceEEEeecccccccChhhhhcCCCceEEEccCCC--CCch-hhhccccCCeeecCCCCccccchH-HhccccCcEeecCC
Q 048789 394 LRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLF-EISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNLEY 469 (724)
Q Consensus 394 Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~ 469 (724)
.+.++++++.+..++... .++|++|+++++. .+|. .+..+++|++|++++|.+..+|.. +..+.+|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888887776543 3689999999998 5555 468999999999999999988866 68999999999999
Q ss_pred cccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchh
Q 048789 470 TYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFH 534 (724)
Q Consensus 470 ~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 534 (724)
| .+..+|...+..+++|++|++.+|... .++ ...+..+++|+.|++..+.+.
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~-----------~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTNQLK-SVP-----------DGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCC-----------TTTTTTCTTCCEEECCSSCBC
T ss_pred C-CccccCHHHhhCCcccCEEECcCCcce-EeC-----------HHHhcCCcccCEEEecCCCee
Confidence 9 477888876789999999999987532 211 122466788888888877654
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=1.3e-07 Score=97.38 Aligned_cols=223 Identities=15% Similarity=0.084 Sum_probs=105.1
Q ss_pred cccCCeeecCCCCccccchH-HhccccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccch
Q 048789 436 VVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLV 514 (724)
Q Consensus 436 L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 514 (724)
|.+|+.|+|.. .++.++.. +..+.+|+.|++.++ .+..++++.+..+.++.++........... .....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~--------~~i~~ 169 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK--------NRWEH 169 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS--------TTTTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc--------ccccc
Confidence 77777777777 66666653 667777777777776 355666666666666665554321000000 00000
Q ss_pred HHhhcCCCCCeEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccccccc-ccccccceEEeecCCcceEEEccC
Q 048789 515 EELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSL-ASLRHLQTLHLTYNDLEEIKIDNG 593 (724)
Q Consensus 515 ~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~ 593 (724)
..+..+..|+. .+.......++...........++..+.+.+.- .......+ ..+++|++|++.+|.++.+....+
T Consensus 170 ~~f~~~~~L~~-~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 170 FAFIEGEPLET-TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp SCEEESCCCEE-EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred cccccccccce-eEEecCCCcHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 01122333331 112222333333222111111234444444321 11111111 136777777777776776544444
Q ss_pred CccccccccCCCCcceEEEecCcchhhhhccCCCCCcccccccCCCcccccc-eeccccccccccccCC-CCCCCCccEE
Q 048789 594 GEVKRVRELSAPNLKRVEIENCQDMEEIISSEKLSEVPAEVMENLIPFARLE-RLILEELKNLKTIHSK-ALPFPCLKEM 671 (724)
Q Consensus 594 ~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~-~L~l~~~~~L~~~~~~-~~~~p~L~~L 671 (724)
. .+++|+.|.|.+. ++.+.. ....++++|+ .+.|.+ +++.++.. -..+++|+.+
T Consensus 247 ~--------~~~~L~~l~l~~n--i~~I~~------------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 247 A--------QKKYLLKIKLPHN--LKTIGQ------------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp T--------TCTTCCEEECCTT--CCEECT------------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEE
T ss_pred h--------CCCCCCEEECCcc--cceehH------------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEE
Confidence 3 3456666666542 333311 1234456666 666655 55555432 2335566666
Q ss_pred eecCCCCCCCCCCCCCCCCCcceEE
Q 048789 672 SVDGCPLLKKLPLDCNRGLERKIII 696 (724)
Q Consensus 672 ~i~~C~~L~~lp~~~~~~l~~l~~~ 696 (724)
.+.+ .+++.++...-..+..|+.+
T Consensus 303 ~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECS-SCCCEECTTTTCTTCCCCEE
T ss_pred EeCC-CccCccchhhhcCCcchhhh
Confidence 6543 35556655444444444443
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=7.5e-08 Score=99.23 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=110.6
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC-cEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF-DFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... . ..+ ...+.+..+.......+ +..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~-~-~~~~~~~~~~~~~~~~~~~~~-~~~----- 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF-G-ENWRHNFLELNASDERGINVI-REK----- 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH-G-GGHHHHEEEEETTCHHHHHTT-HHH-----
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-C-CcccCceEEeeccccCchHHH-HHH-----
Confidence 35899999999999999887766799999999999999999998851 1 111 11233332221111100 000
Q ss_pred CCccccCCcCHHHHHHHHHHH--H-ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChHH-Hhh-ccCc
Q 048789 233 LFNESWQSKGLEEKANKIFKI--L-SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIEV-CGQ-MEAH 305 (724)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~v-~~~-~~~~ 305 (724)
....... + .+++.++|+||++.. .....+...+.....+ .++|+||....- ... ....
T Consensus 97 --------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~-~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 97 --------------VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSN-VRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp --------------HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHHTE
T ss_pred --------------HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC-CeEEEEeCCccccCHHHHhhC
Confidence 0010000 1 256889999999753 2233333222222334 788888866432 111 1122
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHH
Q 048789 306 RSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAM 362 (724)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 362 (724)
..+.+.+++.++...++...+.......+ .+....|++.++|.|..+..+....
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 36889999999999999887654331111 4567788999999998765544433
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.65 E-value=3.3e-08 Score=91.39 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=77.7
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hhccccCCeeecCCCCccccchH-HhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-ISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
.+.|+.|++++|.+...++..|..+++|++|+|+++. .+|.. +..+++|++|+|++|.+..+|.. +..+.+|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 3789999999999999989889999999999999999 77775 58999999999999999999986 89999999999
Q ss_pred cCCcccccccCh
Q 048789 467 LEYTYGVLKIPP 478 (724)
Q Consensus 467 l~~~~~~~~lp~ 478 (724)
+++|. +...+.
T Consensus 112 L~~N~-~~c~~~ 122 (174)
T 2r9u_A 112 LYNNP-WDCECR 122 (174)
T ss_dssp CCSSC-BCTTBG
T ss_pred eCCCC-cccccc
Confidence 99995 455554
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=1.7e-06 Score=91.22 Aligned_cols=220 Identities=16% Similarity=0.166 Sum_probs=139.1
Q ss_pred cceEEEeecccccccChhhhhcCCCceEEEccCCC-CCc-hhhhccccCCeeecCCCCccccchHHhccccCcEeecCCc
Q 048789 393 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLL-FEISKVVSLQHLDLSHSRIERLPIEFKYLVNLKCLNLEYT 470 (724)
Q Consensus 393 ~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp-~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~ 470 (724)
+|+.+.+..+ +..+....|.++ .|+.+.+..+- .++ ..+.+|.+|+.++++.|.++.+|...-...+|+.+.+..+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 6888888766 777777778775 68888887644 333 4677889999999998888888877555688999988754
Q ss_pred ccccccChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhhhHHHhcccccccccc
Q 048789 471 YGVLKIPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHALQRLLDSCMLQYVST 550 (724)
Q Consensus 471 ~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~L 550 (724)
+..++...+..+++|+.+.+..+ +..++. ..+.. . .|
T Consensus 214 --l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~-----------~aF~~-~---------------------------~L 250 (401)
T 4fdw_A 214 --LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQ-----------EAFRE-S---------------------------GI 250 (401)
T ss_dssp --CCEECTTTTTTCTTCCCEECCTT--CCEECT-----------TTTTT-C---------------------------CC
T ss_pred --hheehhhHhhCCCCCCEEecCCC--ccCccc-----------ccccc-C---------------------------Cc
Confidence 67888877888888998888642 111110 01111 2 33
Q ss_pred CcEEeeccCCCCcccccccccccccceEEeecCCcc-----eEEEccCCccccccccCCCCcceEEEecCcchhhhhccC
Q 048789 551 PSLCLSHFNNSKSLGVFSLASLRHLQTLHLTYNDLE-----EIKIDNGGEVKRVRELSAPNLKRVEIENCQDMEEIISSE 625 (724)
Q Consensus 551 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-----~~~~~~~~~l~~L~~~~l~~L~~L~l~~c~~l~~l~~~~ 625 (724)
+.+.+. +++..+....|..|++|+.+.+.++.+. .+....+. .+++|+.+.|.+ .++.+..
T Consensus 251 ~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~--------~c~~L~~l~l~~--~i~~I~~-- 316 (401)
T 4fdw_A 251 TTVKLP--NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE--------GCPKLARFEIPE--SIRILGQ-- 316 (401)
T ss_dssp SEEEEE--TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT--------TCTTCCEECCCT--TCCEECT--
T ss_pred cEEEeC--CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh--------CCccCCeEEeCC--ceEEEhh--
Confidence 444442 2344444457888889999998875543 33333443 356666666653 2333311
Q ss_pred CCCCcccccccCCCcccccceeccccccccccccCCC-CCCCCccEEeecCCCCCCCCCCC
Q 048789 626 KLSEVPAEVMENLIPFARLERLILEELKNLKTIHSKA-LPFPCLKEMSVDGCPLLKKLPLD 685 (724)
Q Consensus 626 ~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~-~~~p~L~~L~i~~C~~L~~lp~~ 685 (724)
....++++|+.+.|.. +++.+.... ..+ +|+.+.+.+. .+..++.+
T Consensus 317 ----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~ 363 (401)
T 4fdw_A 317 ----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEK 363 (401)
T ss_dssp ----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCS
T ss_pred ----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccc
Confidence 1344567888888843 566665422 234 7888888775 44445443
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.1e-07 Score=91.43 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=103.6
Q ss_pred ccccchhhHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhccCCC--CCCc--EEEEEEeCCcCCHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLME----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTP--NSFD--FVIWIVVSKDLQLAKIQEG 226 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~--~~~wv~v~~~~~~~~~~~~ 226 (724)
.+.||++++++|...|.. +..+.+.|+|++|+|||++++.|++...... .... ..+.++.....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 378999999999877754 5778999999999999999999999873211 1111 3556676677788899999
Q ss_pred HHHHcCCCccccCCcCHHHHHHHHHHHH---ccCceEEEeccccChhchhhccCCC--CCCCCCCcEEEEecCChH----
Q 048789 227 IAKKMGLFNESWQSKGLEEKANKIFKIL---SKKKFVLLLDDIWELVDLAQVGLPV--SSCASSSNKIVFTTREIE---- 297 (724)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~--~~~~~g~s~iliTtr~~~---- 297 (724)
|++++...... .....+ ....+.+.+ .+++++++||+++...+-+-+...+ +....+...||.++...+
T Consensus 101 I~~~L~g~~~~-~~~~~~-~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLC-GDISLE-ALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC---CCCCHH-HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCC-chHHHH-HHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99999654211 122223 333333333 4567999999997642111111111 111111023333343321
Q ss_pred -H----HhhccCccceeeccCChHHHHHHHHHHhC
Q 048789 298 -V----CGQMEAHRSFKVECLGFDDAWKLFEEKVG 327 (724)
Q Consensus 298 -v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (724)
+ ...++ ...+...+++.++-.+++.+++.
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 12221 24688999999999999998874
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.54 E-value=1.1e-07 Score=87.39 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=74.3
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchh-hhccccCCeeecCCCCccccchH-HhccccCcEee
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFE-ISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLN 466 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~ 466 (724)
.+.|+.|++++|.+..+++..|..+++|++|+|+++. .+|.. +..+++|++|+|++|.++.+|.. +..+.+|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 4789999999999999989889999999999999999 67665 58999999999999999999875 88999999999
Q ss_pred cCCcc
Q 048789 467 LEYTY 471 (724)
Q Consensus 467 l~~~~ 471 (724)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99995
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.44 E-value=8e-07 Score=91.03 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc-EEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD-FVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~------------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERG------------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTC-------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccC-------------
Confidence 45899999999999998877665699999999999999999998752 11111 122233222111
Q ss_pred CCccccCCcCHHHHHHHHHHH--H-ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChH-HHhh-ccCc
Q 048789 233 LFNESWQSKGLEEKANKIFKI--L-SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIE-VCGQ-MEAH 305 (724)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~-v~~~-~~~~ 305 (724)
.....+....+... + .+++.++|+||++.. .....+...+.....+ .++|+||.... +... ....
T Consensus 82 -------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~-~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 82 -------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp -------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS-EEEEEEESCGGGSCHHHHTTC
T ss_pred -------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC-CeEEEEeCChhhcchHHHhhC
Confidence 00111111111111 1 256789999999753 2334444334333344 77777776543 1111 1223
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHH
Q 048789 306 RSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359 (724)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 359 (724)
..+.+.+++.++...++...+....... -.+....+++.++|.+..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4788999999999999988775433221 14456788889999887655443
No 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=8.2e-07 Score=91.43 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=91.2
Q ss_pred CCcceEEEeecccccccChhhhhcCCCceEEEccCCC--CCc-hhhhccccCCeeecCCCCc------------------
Q 048789 391 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLL-FEISKVVSLQHLDLSHSRI------------------ 449 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp-~~i~~L~~L~~L~L~~~~i------------------ 449 (724)
|++|+.|.+.+ .+..+.+..|..|++|+.|+++.+. .++ ..+..+.++.++.+..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777777 5667777777777778877777765 222 2344454555554433100
Q ss_pred ---------cccchHH----------------------------hccccCcEeecCCcccccccChhhhcCCCcCcEEec
Q 048789 450 ---------ERLPIEF----------------------------KYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRM 492 (724)
Q Consensus 450 ---------~~Lp~~i----------------------------~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l 492 (724)
..+|..+ ..+.+|+.|++.+| .+..+|...+..+.+|+.|++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEEC
Confidence 0111111 12566777777766 366677666777777777776
Q ss_pred cccCCCcccccccccCCcccchHHhhcCCCCC-eEEEEEcchhhhHHHhccccccccccCcEEeeccCCCCccccccccc
Q 048789 493 YECATVPQARDSILFGDCRVLVEELLCLEHLS-VFTITLNNFHALQRLLDSCMLQYVSTPSLCLSHFNNSKSLGVFSLAS 571 (724)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~-~L~i~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~~~~~~~l~~ 571 (724)
..+ +..++ ...+..+.+|+ .+. +.. .+..+...+|..
T Consensus 258 ~~n--i~~I~-----------~~aF~~~~~L~~~l~---------------------------l~~--~l~~I~~~aF~~ 295 (329)
T 3sb4_A 258 PHN--LKTIG-----------QRVFSNCGRLAGTLE---------------------------LPA--SVTAIEFGAFMG 295 (329)
T ss_dssp CTT--CCEEC-----------TTTTTTCTTCCEEEE---------------------------ECT--TCCEECTTTTTT
T ss_pred Ccc--cceeh-----------HHHhhCChhccEEEE---------------------------Ecc--cceEEchhhhhC
Confidence 643 21111 11233344444 333 332 334444457888
Q ss_pred ccccceEEeecCCcceEEEccCC
Q 048789 572 LRHLQTLHLTYNDLEEIKIDNGG 594 (724)
Q Consensus 572 ~~~L~~L~l~~~~l~~~~~~~~~ 594 (724)
|++|+.|++.++.++.+.+..+.
T Consensus 296 c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTTTC
T ss_pred CccCCEEEeCCCccCccchhhhc
Confidence 89999999888888876555554
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.39 E-value=3.1e-06 Score=88.76 Aligned_cols=194 Identities=13% Similarity=0.123 Sum_probs=107.4
Q ss_pred CccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.+++|++..++.+.+.+..+. .+.+.|+|++|+||||+|+.+++... ....+.. ...... .-...+...-.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~---~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSCS---SCCSSS----HHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCCC---CCCccc----HHHHHHhccCC
Confidence 358999999999999987654 45789999999999999999998872 1111100 000000 00111111000
Q ss_pred CC-----c-cccCCcCHHHHHHHHHHH-HccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChH-HHh-h
Q 048789 233 LF-----N-ESWQSKGLEEKANKIFKI-LSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIE-VCG-Q 301 (724)
Q Consensus 233 ~~-----~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~-v~~-~ 301 (724)
.. . .........+..+.+... ..+++.++|+||++.. ...+.+...+.....+ ..+|++|.... +.. .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSS-EEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCc-eEEEEEeCChHhCcHHH
Confidence 00 0 000111222222221110 1346789999999653 2233332222222233 66777665433 211 1
Q ss_pred ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHH
Q 048789 302 MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVG 359 (724)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 359 (724)
......+.+.+++.++...++.+.+....... -.+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 12235788999999999999987664322111 13456789999999998776543
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=1.2e-07 Score=99.10 Aligned_cols=133 Identities=13% Similarity=0.112 Sum_probs=86.6
Q ss_pred CcceEEEeecccccccChhhhhc-----CCCceEEEccCCC---C-CchhhhccccCCeeecCCCCcccc-----chHH-
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQS-----MASLRVLKLSYSN---P-LLFEISKVVSLQHLDLSHSRIERL-----PIEF- 456 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~-----l~~Lr~L~l~~~~---~-lp~~i~~L~~L~~L~L~~~~i~~L-----p~~i- 456 (724)
+.|+.|++++|.+.......+.. .++|++|+|++|. . ...-...+.+|++|+|++|.+... ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57889999999876544333332 3689999999997 1 222234577899999999988632 2223
Q ss_pred hccccCcEeecCCcccccc-----cChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEc
Q 048789 457 KYLVNLKCLNLEYTYGVLK-----IPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLN 531 (724)
Q Consensus 457 ~~L~~L~~L~l~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~ 531 (724)
....+|++|+|++|. +.. ++.. +..+++|++|++++|..... ........+...++|+.|+++.+
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~--------g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDE--------GLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHH--------HHHHHHHHGGGCSCCCEEECCSS
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcH--------HHHHHHHHHhcCCCcCeEECCCC
Confidence 245789999999985 332 3332 57788999999988753210 01122345566667777777766
Q ss_pred chh
Q 048789 532 NFH 534 (724)
Q Consensus 532 ~~~ 534 (724)
.+.
T Consensus 222 ~i~ 224 (372)
T 3un9_A 222 GAG 224 (372)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=5.7e-07 Score=93.39 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=80.8
Q ss_pred eEEEeecc-cccccChhhhhcCCCceEEEccC-CC--CCc-hhhhccccCCeeecCCCCccccch-HHhccccCcEeecC
Q 048789 395 RTLFLSSN-IFHRVNSDFFQSMASLRVLKLSY-SN--PLL-FEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNLE 468 (724)
Q Consensus 395 r~L~l~~~-~~~~~~~~~~~~l~~Lr~L~l~~-~~--~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~ 468 (724)
..++++++ .+..++. +..+.+|++|+|++ +. .+| ..++.|.+|++|+|++|.+..+|. .+.+|.+|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 6777655 88899999999996 66 455 578999999999999999997765 57899999999999
Q ss_pred CcccccccChhhhcCCCcCcEEeccccCCC
Q 048789 469 YTYGVLKIPPKVISNLKILQTLRMYECATV 498 (724)
Q Consensus 469 ~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 498 (724)
+| .+..+|.+.+..+. |++|++.+|...
T Consensus 89 ~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 98 47888887566565 999999987654
No 163
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.34 E-value=2.4e-06 Score=85.85 Aligned_cols=198 Identities=18% Similarity=0.175 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.+++|.+..++++.+.+.. ...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~--- 87 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSEL--- 87 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGG---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHH---
Confidence 4689999999999887743 345679999999999999999999986 222 222322111
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh----------------chhhccCCCC--CC
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV----------------DLAQVGLPVS--SC 282 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~ 282 (724)
.... ...........+......++.+|+|||++... .+..+...+. ..
T Consensus 88 -----------~~~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 88 -----------VKKF---IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -----------CCCS---TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -----------HHhc---cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0000 11111222222333334567899999996421 1111111111 11
Q ss_pred CCCCcEEEEecCChHHH-----hhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCC-CchHH
Q 048789 283 ASSSNKIVFTTREIEVC-----GQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGL-PLALI 356 (724)
Q Consensus 283 ~~g~s~iliTtr~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~ 356 (724)
..+ ..||.||...... ........+.+...+.++..+++...+.........+ ...++..+.|. |-.+.
T Consensus 154 ~~~-~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSS-EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCC-EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 223 6777788754331 1111223688899999999999998876543222223 35566777774 43333
Q ss_pred HHH-----HHHh-cC--CChhHHHHHHHHHh
Q 048789 357 TVG-----RAMA-SR--KTPREWEHAIEVLR 379 (724)
Q Consensus 357 ~~~-----~~l~-~~--~~~~~w~~~~~~l~ 379 (724)
.+. ..+. .. -+.+..+.++....
T Consensus 229 ~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 229 AICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 221 1112 21 35566666665543
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.33 E-value=4.8e-07 Score=84.99 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=41.7
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++||++.++++.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999988777788999999999999999999886
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.32 E-value=1.2e-06 Score=85.65 Aligned_cols=171 Identities=8% Similarity=0.069 Sum_probs=99.5
Q ss_pred ccccc---hhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 155 TVVGL---QSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 155 ~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
+++|. +...+.+.+++.....+.+.|+|++|+||||+|+.+++... .....+.|++.+...+. +...
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~~- 98 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STAL- 98 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGGG-
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHHH-
Confidence 46663 34555565665555678899999999999999999998872 11234556665432100 0000
Q ss_pred CCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc----hhhccCCCCCC-CCCCcEEEEecCChH---------
Q 048789 232 GLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD----LAQVGLPVSSC-ASSSNKIVFTTREIE--------- 297 (724)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~~~~~-~~g~s~iliTtr~~~--------- 297 (724)
.+.+ .+..++|+||++.... .+.+...+... ..+..++|+||+...
T Consensus 99 -------------------~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 99 -------------------LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp -------------------GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred -------------------HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 0011 3467899999865321 11121111100 112035777776322
Q ss_pred HHhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 298 VCGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 298 v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
+...+.....+.+.+++.++..+++...+....... -.+....+++.++|.+..+..+
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHH
Confidence 222222235789999999999999998775332111 2456778999999988766543
No 166
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=3.8e-06 Score=89.56 Aligned_cols=180 Identities=19% Similarity=0.186 Sum_probs=103.1
Q ss_pred ccc-cchhh--HHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 155 TVV-GLQST--FDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 155 ~~v-Gr~~~--~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.|+ |.... ...+.......+ ...+.|+|++|+||||||+.+++........ ..+++++. ..+...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~------~~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITS------EKFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEH------HHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeH------HHHHHHHHHH
Confidence 455 64433 233333333333 6789999999999999999999876211111 12344443 3344444444
Q ss_pred cCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc----hhhccCCCCC-CCCCCcEEEEecCCh---------
Q 048789 231 MGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD----LAQVGLPVSS-CASSSNKIVFTTREI--------- 296 (724)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~g~s~iliTtr~~--------- 296 (724)
+... .. ..+...+..+..+|++||++.... .+.+...+.. ...| ..||+||...
T Consensus 179 ~~~~-------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~-~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 179 MKEG-------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHTT-------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT-CEEEEEESSCGGGCSSCCH
T ss_pred HHcc-------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEECCCHHHHHHHHH
Confidence 3221 11 123333443677999999965321 1222222111 1234 6788888752
Q ss_pred HHHhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHH
Q 048789 297 EVCGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALI 356 (724)
Q Consensus 297 ~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 356 (724)
.+...+..+..+.+.+++.++-..++.+.+.......++ +....|++.+.|.+..+.
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 233334444678899999999999998887532222232 346778888999886554
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.23 E-value=1.5e-06 Score=90.11 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=75.1
Q ss_pred CCCCCCCCcceEEEeec-ccccccChhhhhcCCCceEEEccCCC---CCchhhhccccCCeeecCCCCccccchHHhccc
Q 048789 385 FSESPVCPRLRTLFLSS-NIFHRVNSDFFQSMASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHSRIERLPIEFKYLV 460 (724)
Q Consensus 385 ~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~l~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~ 460 (724)
++....+.+|+.|+|++ |.+..+++..|..+++|++|+|++|. ..|..+.+|++|++|+|++|.+..+|..+....
T Consensus 24 ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 103 (347)
T 2ifg_A 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103 (347)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC
Confidence 34456678899999996 99999998899999999999999999 445578999999999999999999998765555
Q ss_pred cCcEeecCCcc
Q 048789 461 NLKCLNLEYTY 471 (724)
Q Consensus 461 ~L~~L~l~~~~ 471 (724)
+|+.|+|.+|.
T Consensus 104 ~L~~l~l~~N~ 114 (347)
T 2ifg_A 104 SLQELVLSGNP 114 (347)
T ss_dssp CCCEEECCSSC
T ss_pred CceEEEeeCCC
Confidence 59999999885
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.17 E-value=7.2e-05 Score=74.38 Aligned_cols=196 Identities=16% Similarity=0.097 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHH-------Hhh---cCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHH
Q 048789 154 ATVVGLQSTFDGVWK-------CLM---EEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKI 223 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 223 (724)
..++|....++++.. .+. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~------- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPD------- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHH-------
Confidence 346788777666665 332 3456789999999999999999999986 2221 1222211
Q ss_pred HHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh-----------hc-hhhccCCCC---CCCCCCcE
Q 048789 224 QEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL-----------VD-LAQVGLPVS---SCASSSNK 288 (724)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~-~~~l~~~~~---~~~~g~s~ 288 (724)
.+.... ...........+......+..+|+|||+... .. ...+...+. ..... ..
T Consensus 100 ------~~~g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~-~~ 169 (272)
T 1d2n_A 100 ------KMIGFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRK-LL 169 (272)
T ss_dssp ------GCTTCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCE-EE
T ss_pred ------HhcCCc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCC-EE
Confidence 010000 0000112222233333456889999998642 01 111211111 11222 45
Q ss_pred EEEecCChHHHhhc---cC-ccceeeccCCh-HHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch--HHHHHH-
Q 048789 289 IVFTTREIEVCGQM---EA-HRSFKVECLGF-DDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA--LITVGR- 360 (724)
Q Consensus 289 iliTtr~~~v~~~~---~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla--i~~~~~- 360 (724)
||.||........+ .. ...+.+.+++. ++-..++.+... . -.+....+++.+.|.+.. +..+-.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 66677776543321 11 34578888887 666666554321 1 144577888889884321 222222
Q ss_pred --HHhcCCChhHHHHHHHHHhh
Q 048789 361 --AMASRKTPREWEHAIEVLRC 380 (724)
Q Consensus 361 --~l~~~~~~~~w~~~~~~l~~ 380 (724)
..........+++++..+..
T Consensus 242 l~~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 242 IEMSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHhhhchHHHHHHHHHHHHH
Confidence 22222445677777766544
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.17 E-value=3.3e-05 Score=79.10 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=103.2
Q ss_pred CccccchhhHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME-----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
..++|++..+..+.+++.. .....+.|+|++|+|||++|+.+++.. ... .++++.+......++...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~-- 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAI-- 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHH--
Confidence 4689999999988887753 344678999999999999999999886 222 234443332222222111
Q ss_pred HHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh--chhhccCCCC---------C---------CCCCCcE
Q 048789 229 KKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV--DLAQVGLPVS---------S---------CASSSNK 288 (724)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~---------~---------~~~g~s~ 288 (724)
+ ... ..+..++++||+.... ....+...+. . ...+ .+
T Consensus 84 --l-------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~ 140 (324)
T 1hqc_A 84 --L-------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR-FT 140 (324)
T ss_dssp --H-------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC-CE
T ss_pred --H-------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC-EE
Confidence 1 100 1245688888886531 1111100000 0 0012 45
Q ss_pred EEEecCChH-HHhhc-c-CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHHHHHH
Q 048789 289 IVFTTREIE-VCGQM-E-AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITVGRAM 362 (724)
Q Consensus 289 iliTtr~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 362 (724)
++.||.... +...+ . ....+.+.+++.++...++.+.+....... -.+....+++.+.|.|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666665432 11111 1 124688999999999999988775433221 24567889999999998776655444
No 170
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.13 E-value=8.7e-06 Score=82.84 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=85.7
Q ss_pred ccccchhhHHHHHHHhh---------------cCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCC
Q 048789 155 TVVGLQSTFDGVWKCLM---------------EEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQ 219 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 219 (724)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.... .......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 47999988888876653 234557999999999999999988887621 111111112233211
Q ss_pred HHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh-----------hchhhccCCCCCCCCCCcE
Q 048789 220 LAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL-----------VDLAQVGLPVSSCASSSNK 288 (724)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g~s~ 288 (724)
.+.... ...........+... +..+|++|+++.. .....+...+.....+ ..
T Consensus 109 ----------~l~~~~---~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~-~~ 171 (309)
T 3syl_A 109 ----------DLVGQY---IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD-LV 171 (309)
T ss_dssp ----------GTCCSS---TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT-CE
T ss_pred ----------Hhhhhc---ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC-EE
Confidence 111000 111111222222221 4569999999732 2222332222222334 67
Q ss_pred EEEecCChHH----------HhhccCccceeeccCChHHHHHHHHHHhCC
Q 048789 289 IVFTTREIEV----------CGQMEAHRSFKVECLGFDDAWKLFEEKVGR 328 (724)
Q Consensus 289 iliTtr~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (724)
+|.||..... ...+ ...+.+.+++.++-..++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 7777765432 1221 257889999999999999887754
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.7e-05 Score=86.68 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=104.4
Q ss_pred CccccchhhHHHHHHHhhc-----------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC
Q 048789 154 ATVVGLQSTFDGVWKCLME-----------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK 216 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 216 (724)
.+++|++..++++.+++.. ...+.+.|+|++|+||||+|+.+++.. . + ..+.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~----~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-G----Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-T----C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-C----C-CEEEEeCCC
Confidence 4689999999999999864 134789999999999999999999986 1 2 233444444
Q ss_pred cCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH--HHccCceEEEeccccChhc-----hhhccCCCCCCCCCCcEE
Q 048789 217 DLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK--ILSKKKFVLLLDDIWELVD-----LAQVGLPVSSCASSSNKI 289 (724)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~g~s~i 289 (724)
..... +....+....... ..........+ ...+++.+|++|+++.... +..+...+.. .+ ..|
T Consensus 113 ~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~-~~i 182 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TS-TPL 182 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CS-SCE
T ss_pred cchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cC-CCE
Confidence 43332 2222222211100 00000000000 1135788999999965311 1222211111 12 345
Q ss_pred EEecCChH---HHhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc-hHHHH
Q 048789 290 VFTTREIE---VCGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL-ALITV 358 (724)
Q Consensus 290 liTtr~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 358 (724)
|+++.... +.........+.+.+++.++..+++...+.......++ +....|++.++|.+. ++..+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 55554322 21111223468899999999999888776433222222 336788899999554 44444
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=9.3e-06 Score=84.36 Aligned_cols=191 Identities=11% Similarity=0.135 Sum_probs=106.0
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCC-CCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDT-PNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... ...+ ....++.+.......+. +.+....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVR-EKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHT-THHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHH-HHHHHHh
Confidence 4589999999999999987755559999999999999999998875100 0111 12233333322222221 1111110
Q ss_pred -CCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChH-HHhhc-cCccc
Q 048789 233 -LFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIE-VCGQM-EAHRS 307 (724)
Q Consensus 233 -~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~-v~~~~-~~~~~ 307 (724)
.... ..... .....-.++.-++++|++... .....+...+...... .+++++|.... +...+ .....
T Consensus 115 ~~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 115 RLTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGV-TRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HSCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCC-ceEEEEeCchhhCcchhhccCce
Confidence 0000 00000 000001235569999998653 1222222222222233 66777665432 21111 11236
Q ss_pred eeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 308 FKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 308 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
+.+.+++.++....+...+.......+ .+....|++.++|.|..+..
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 788999999999998887643331222 45678899999999876543
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.12 E-value=1.7e-05 Score=78.54 Aligned_cols=174 Identities=13% Similarity=0.142 Sum_probs=95.9
Q ss_pred CccccchhhHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLM---E---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++.+.+++. . ...+.|.|+|++|+|||++|+.+++.. ... .+.+..+...+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 468999988877766542 1 234568899999999999999999987 222 23333332110
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh-----------------chhhccCCCCC--C
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV-----------------DLAQVGLPVSS--C 282 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~--~ 282 (724)
. ............+.........+|++||++... .+..+...+.. .
T Consensus 78 -----------~----~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 -----------V----IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp -----------S----STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred -----------h----ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 011111222223333334567899999997531 01111111111 1
Q ss_pred CCCCcEEEEecCChHHHh-hc----cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 283 ASSSNKIVFTTREIEVCG-QM----EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 283 ~~g~s~iliTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
..+ ..||.||....... .+ .....+.+...+.++-.+++...+...... .........+++.+.|.+-
T Consensus 143 ~~~-~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 143 TDH-VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TCC-EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCH
T ss_pred CCC-EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCH
Confidence 123 56666776543211 11 123466788889999999998877543311 2222234778888888764
No 174
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.07 E-value=1.7e-05 Score=83.47 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=39.0
Q ss_pred ceEEEeecccccccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccccch-HHhccccCcEeecCCc
Q 048789 394 LRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNLEYT 470 (724)
Q Consensus 394 Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~ 470 (724)
|+.+.+.. .+..+....|..|.+|+.+++..+. .+|.....+.+|+.+.|..+ ++.++. .+.++.+|+.+++..+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 44444443 2344444445555555555554433 33333222344444444422 333332 2334444444444432
Q ss_pred ccccccChhhhcCCCcCcEEec
Q 048789 471 YGVLKIPPKVISNLKILQTLRM 492 (724)
Q Consensus 471 ~~~~~lp~~~i~~l~~L~~L~l 492 (724)
+..++...+.. .+|+.+.+
T Consensus 237 --l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 237 --VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp --CCEECTTTTTT-CCCSEEEE
T ss_pred --ccCcccccccc-CCccEEEe
Confidence 33344333333 34444444
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.04 E-value=3.7e-05 Score=80.32 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=101.3
Q ss_pred CccccchhhHHH---HHHHhhcCCc--eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe----CCcCCHHHHH
Q 048789 154 ATVVGLQSTFDG---VWKCLMEEQM--GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV----SKDLQLAKIQ 224 (724)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v----~~~~~~~~~~ 224 (724)
+.++|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++.. .....| +.+.. +.........
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCc---ccccchhhhhcccchhHHH
Confidence 468999988776 4445544433 589999999999999999999988 211122 12221 1223333444
Q ss_pred HHHHHHcCC---------------------Ccc-------ccCCcCHHHHHHHHHHHH-----ccC----ceEEEecccc
Q 048789 225 EGIAKKMGL---------------------FNE-------SWQSKGLEEKANKIFKIL-----SKK----KFVLLLDDIW 267 (724)
Q Consensus 225 ~~i~~~l~~---------------------~~~-------~~~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv~ 267 (724)
...+.+... ... ........+....+.+.. .++ +.++++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 433333110 000 000011222222222221 233 3599999997
Q ss_pred Ch--hchhhccCCCCCCCCCCcEEEEecCC-----------------hHHHhhccCccceeeccCChHHHHHHHHHHhCC
Q 048789 268 EL--VDLAQVGLPVSSCASSSNKIVFTTRE-----------------IEVCGQMEAHRSFKVECLGFDDAWKLFEEKVGR 328 (724)
Q Consensus 268 ~~--~~~~~l~~~~~~~~~g~s~iliTtr~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (724)
.. .....+...+.... . ..++++|.. ..+...+ ..+.+.+++.++...++...+..
T Consensus 200 ~l~~~~~~~L~~~le~~~-~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDM-A-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp GSBHHHHHHHHHHTTCTT-C-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHhhCcC-C-CeeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHHHH
Confidence 53 22222222222211 1 233333321 1222322 34789999999999999987754
Q ss_pred CCCCCCCChHHHHHHHHHHhC-CCCchHHH
Q 048789 329 DTLDTHPDIPELAEAVARECG-GLPLALIT 357 (724)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~c~-g~Plai~~ 357 (724)
..... -.+....|++.+. |.|..+..
T Consensus 275 ~~~~~---~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 275 EDVEM---SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TTCCB---CHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCCCC---CHHHHHHHHHHhcCCCHHHHHH
Confidence 33111 2456778888887 87765543
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.03 E-value=7e-05 Score=79.67 Aligned_cols=174 Identities=15% Similarity=0.159 Sum_probs=101.2
Q ss_pred CccccchhhH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHH
Q 048789 154 ATVVGLQSTF---DGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAK 229 (724)
Q Consensus 154 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~ 229 (724)
..++|.+..+ ..+...+..+....+.|+|++|+||||+|+.+++.. ...| +.++.. ....++ +.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~-- 94 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REA-- 94 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHH--
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHH--
Confidence 3579988877 677788887888899999999999999999999986 2222 222211 112211 111
Q ss_pred HcCCCccccCCcCHHHHHHHHHH-HHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEE-ecCChH--H-Hhhc
Q 048789 230 KMGLFNESWQSKGLEEKANKIFK-ILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVF-TTREIE--V-CGQM 302 (724)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~ili-Ttr~~~--v-~~~~ 302 (724)
...... ...+++.+|++|++... ...+.+...+.. +...+|. ||.+.. + ....
T Consensus 95 -----------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~---~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 95 -----------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED---GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp -----------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT---TSCEEEEEESSCGGGSSCHHHH
T ss_pred -----------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc---CceEEEecCCCCcccccCHHHh
Confidence 111111 11467889999999753 222223222222 2133443 544432 1 1111
Q ss_pred cCccceeeccCChHHHHHHHHHHhCCCCCC---C-CCChHHHHHHHHHHhCCCCchHHHH
Q 048789 303 EAHRSFKVECLGFDDAWKLFEEKVGRDTLD---T-HPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~-~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
.....+.+.+++.++...++.+.+...... . ..--.+....|++.++|.+..+..+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 223478899999999999998876531100 0 1112456777888898887655433
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=2.4e-05 Score=81.21 Aligned_cols=194 Identities=9% Similarity=0.107 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHh-hcCCceEEEEEcCCCCcHHHHHHHHHHhccCC-CC--CCcEE--------------------
Q 048789 154 ATVVGLQSTFDGVWKCL-MEEQMGIVGLYGMGGVGKTTLLTQINNKFLDT-PN--SFDFV-------------------- 209 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~--~f~~~-------------------- 209 (724)
.+++|.+...+.+.+++ ..+....+.|+|+.|+||||+|+.++...... .+ .++..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45899999999998888 65554449999999999999999999854111 11 11110
Q ss_pred EEEEeCCc-CCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccCh--hchhhccCCCCCCCCCC
Q 048789 210 IWIVVSKD-LQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSS 286 (724)
Q Consensus 210 ~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~ 286 (724)
+.+..+.. .......++++..+.... ...... .+ ..+.+++-++|+|++... .....+...+.....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~- 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQME------QVDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN- 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTT------C--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT-
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhc------cccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC-
Confidence 11111000 000001222222221100 000000 00 002346679999998762 1122222222111234
Q ss_pred cEEEEecCChH-HHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 287 NKIVFTTREIE-VCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 287 s~iliTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
..+|++|.... +...+ .....+++.+++.++....+...+.......+ -.+....|++.++|.+..+..+
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHH
Confidence 67777776532 21111 22357889999999999998877643221111 0245678889999988655443
No 178
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.94 E-value=0.00013 Score=74.38 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=97.4
Q ss_pred CccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++.|.+.+.- ...+.|.++|++|+|||++|+.+++.. . .. ..+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHH---
Confidence 4689999888888776631 234689999999999999999999986 1 11 22333333211
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc-------------hhhccCCC---CCCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD-------------LAQVGLPV---SSCASS 285 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~g 285 (724)
.. ............+...-..++.+|++|++..... ...+...+ .....+
T Consensus 84 -----------~~---~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 84 -----------SK---WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp -----------CS---SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred -----------hh---hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00 0112222222222223345788999999975310 01111111 111223
Q ss_pred CcEEEEecCChHH-----HhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 286 SNKIVFTTREIEV-----CGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 286 ~s~iliTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
..||.||..... .. .....+.+...+.++-.+++..++....... -......|++.+.|..-
T Consensus 150 -v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sg 216 (322)
T 1xwi_A 150 -ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSG 216 (322)
T ss_dssp -EEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCH
T ss_pred -EEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCH
Confidence 455556654322 22 2234567888888889999988775433111 13456778888888643
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.94 E-value=0.00019 Score=73.26 Aligned_cols=168 Identities=15% Similarity=0.178 Sum_probs=97.4
Q ss_pred CccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++.+.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.++. .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~------~ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSS------S 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEch------H
Confidence 4689999999999887721 134579999999999999999999986 2222 22222 1
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHH-HHccCceEEEeccccChhc-------------hhhccC---CCCCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFK-ILSKKKFVLLLDDIWELVD-------------LAQVGL---PVSSCAS 284 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~---~~~~~~~ 284 (724)
++ ... .....+.....+.+ .-..++.+|+||++..... ...+.. .+.....
T Consensus 86 ~l----~~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DL----VSK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HH----HTT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HH----hhc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 110 00112222333333 3345678999999974311 111111 1111223
Q ss_pred CCcEEEEecCChHH-----HhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCC
Q 048789 285 SSNKIVFTTREIEV-----CGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGL 351 (724)
Q Consensus 285 g~s~iliTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 351 (724)
+ ..||.||..... ... -...+.+...+.++-.+++..++....... -......|++.+.|.
T Consensus 154 ~-v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 154 G-VLVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGY 219 (322)
T ss_dssp C-EEEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTC
T ss_pred c-eEEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCC
Confidence 3 566667765432 222 234567788889999999998876543111 133467788888874
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.94 E-value=0.0002 Score=73.75 Aligned_cols=168 Identities=13% Similarity=0.097 Sum_probs=98.7
Q ss_pred CccccchhhHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLME-----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
.+++|++..++.+..++.. .....|.|+|++|+|||++|+.+++.. ...| +.++.+.......+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH-----
Confidence 4689999999999888863 345678999999999999999998876 2222 22332221111111
Q ss_pred HHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh--chhhccCCC------------------CCCCCCCcE
Q 048789 229 KKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV--DLAQVGLPV------------------SSCASSSNK 288 (724)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~------------------~~~~~g~s~ 288 (724)
...+.. ..+..+++||++.... ....+...+ ....++ ..
T Consensus 98 ------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (338)
T 3pfi_A 98 ------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK-FT 156 (338)
T ss_dssp ------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC-CE
T ss_pred ------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC-eE
Confidence 111111 2356688888886531 111110000 000112 45
Q ss_pred EEEecCChHH-----HhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHHH
Q 048789 289 IVFTTREIEV-----CGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALITV 358 (724)
Q Consensus 289 iliTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 358 (724)
+|.+|..... ... ....+.+.+++.++...++.+.+....... -.+....+++.+.|.|-.+..+
T Consensus 157 ~i~atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEEESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEeCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHH
Confidence 6666654332 222 235789999999999999988775432111 1455777888899998655443
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=8.4e-05 Score=76.00 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=91.9
Q ss_pred HHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCc
Q 048789 164 DGVWKCLMEE--QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSK 241 (724)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 241 (724)
..+..++... ....+.|+|++|+||||+|+.+++..... .+ .+++++. .++...+...+.. .
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~------~~~~~~~~~~~~~-------~ 87 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSA------DDFAQAMVEHLKK-------G 87 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEH------HHHHHHHHHHHHH-------T
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEH------HHHHHHHHHHHHc-------C
Confidence 3444444433 35689999999999999999999987211 12 2344442 3333344333311 0
Q ss_pred CHHHHHHHHHHHHccCceEEEeccccChhc---h-hhccCCCCC-CCCCCcEEEEecCCh---------HHHhhccCccc
Q 048789 242 GLEEKANKIFKILSKKKFVLLLDDIWELVD---L-AQVGLPVSS-CASSSNKIVFTTREI---------EVCGQMEAHRS 307 (724)
Q Consensus 242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~-~~l~~~~~~-~~~g~s~iliTtr~~---------~v~~~~~~~~~ 307 (724)
... .+...+ .+..+|++||+..... + +.+...+.. ...+ ..|++||... .+...+.....
T Consensus 88 ~~~----~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~-~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 TIN----EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE-KQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp CHH----HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT-CEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred cHH----HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 111 122222 2467999999965321 1 222222111 1234 5677777532 22333333456
Q ss_pred eeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch
Q 048789 308 FKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 308 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
+.+.+ +.++...++...+.......+ .+....|++.+ |..-.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 88999 999999999988754332222 45567788888 76643
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.92 E-value=0.00012 Score=75.89 Aligned_cols=177 Identities=11% Similarity=0.069 Sum_probs=98.6
Q ss_pred CccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++.+.+.+.. ...+.|.|+|++|+|||++|+.+++.. .. ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 4689999999998887642 345689999999999999999999876 22 233444332110
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHH-HHccCceEEEeccccChh-------------chhhccCCCCC----CC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFK-ILSKKKFVLLLDDIWELV-------------DLAQVGLPVSS----CA 283 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~----~~ 283 (724)
.. .. ........+.. .-..++.+|+||++.... ....+...+.. ..
T Consensus 156 ------------~~---~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------KW---VG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------SS---TT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------cc---cc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 00 11122222222 223567899999985320 01111111111 11
Q ss_pred CCCcEEEEecCChHHH-hhc--cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC-chHHHH
Q 048789 284 SSSNKIVFTTREIEVC-GQM--EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP-LALITV 358 (724)
Q Consensus 284 ~g~s~iliTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~ 358 (724)
.+ ..||.||...... ..+ .....+.+...+.++..+++...+....... .......|++.+.|.. -.+..+
T Consensus 220 ~~-v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 220 DR-ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp CC-EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CC-EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHH
Confidence 22 4566566543221 111 1223567888888888888887764322111 1345677888888844 344433
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.90 E-value=3e-05 Score=72.03 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=41.6
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999988777788999999999999999999886
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.89 E-value=0.00013 Score=74.70 Aligned_cols=168 Identities=11% Similarity=0.063 Sum_probs=97.4
Q ss_pred CccccchhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
++++|.+..++.+.+++..+. ..++.+.|++|+|||++|+.+++.. . ...+.++.+.. ....+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~-----~~~~~i~~~~~-~~~~i--------- 89 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-N-----ADMMFVNGSDC-KIDFV--------- 89 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-T-----EEEEEEETTTC-CHHHH---------
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-C-----CCEEEEccccc-CHHHH---------
Confidence 468999999999999998755 4577788889999999999999886 1 22344443321 12211
Q ss_pred CCccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccChh---chhhccCCCCCCCCCCcEEEEecCChHH-----H
Q 048789 233 LFNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWELV---DLAQVGLPVSSCASSSNKIVFTTREIEV-----C 299 (724)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~g~s~iliTtr~~~v-----~ 299 (724)
...+.+.. .+++.++++||+.... ....+...+.....+ .++|+||....- .
T Consensus 90 --------------~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~-~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 90 --------------RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSN-CSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp --------------HTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGG-CEEEEEESSGGGSCTTHH
T ss_pred --------------HHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCC-cEEEEEeCCccccCHHHH
Confidence 11122211 2367899999997643 222222222111123 677777765431 2
Q ss_pred hhccCccceeeccCChHHHHHHHH-------HHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 300 GQMEAHRSFKVECLGFDDAWKLFE-------EKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 300 ~~~~~~~~~~l~~L~~~~~~~lf~-------~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
.. ...+.+.+++.++-.+++. ..+.......++ .+....+++.++|.+..+..
T Consensus 155 sR---~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 155 SR---CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp HH---SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred hh---CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 22 2368888998887433322 222211111111 25677788888887765443
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.86 E-value=0.00016 Score=74.72 Aligned_cols=169 Identities=13% Similarity=0.133 Sum_probs=95.8
Q ss_pred CccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++.|.+.+.. ...+-|.++|++|+|||++|+.+++.. ... .+.++. .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~------~ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSS------S 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeH------H
Confidence 4689999999998887631 123468899999999999999999987 222 222221 1
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc-------------hhhccCCCC---CCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD-------------LAQVGLPVS---SCASS 285 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~---~~~~g 285 (724)
++. ... ...........+...-..++.+|+||++..... ...+...+. ....+
T Consensus 119 ~l~----~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 DLV----SKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp HHH----SCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred HHh----hhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 211 110 111122222222223345789999999975310 111111111 11223
Q ss_pred CcEEEEecCChH-----HHhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCC
Q 048789 286 SNKIVFTTREIE-----VCGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGL 351 (724)
Q Consensus 286 ~s~iliTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 351 (724)
..||.||.... +.. .....+.+...+.++-.+++..++....... -......|++.+.|.
T Consensus 188 -v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 188 -VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGY 252 (355)
T ss_dssp -EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTC
T ss_pred -eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCC
Confidence 55666666442 222 2234567888888999999988875433111 134467788889884
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.85 E-value=0.00063 Score=68.47 Aligned_cols=170 Identities=11% Similarity=0.071 Sum_probs=96.3
Q ss_pred CccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.++.+...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~--- 91 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLT--- 91 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHh---
Confidence 4689999999998887632 235689999999999999999999886 22 22333332211
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHH-HHccCceEEEeccccChhc-------------hhhcc---CCCCCC--
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFK-ILSKKKFVLLLDDIWELVD-------------LAQVG---LPVSSC-- 282 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~---~~~~~~-- 282 (724)
.. ...........+.. ....++.+|++|++..... ...+. ...+..
T Consensus 92 -----------~~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 92 -----------SK----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp -----------SS----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred -----------hc----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 01112222333322 3345778999999964310 00010 111111
Q ss_pred CCCCcEEEEecCChH-----HHhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 283 ASSSNKIVFTTREIE-----VCGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 283 ~~g~s~iliTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
+.+ ..||.||.... +...+ ...+.+...+.++...++...+....... -......+++.+.|.+-
T Consensus 157 ~~~-v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 157 GDR-IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSG 226 (297)
T ss_dssp --C-EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCH
T ss_pred CCc-EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCH
Confidence 122 45666776543 22222 23556667777888888877664322111 13456788889999875
No 187
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.83 E-value=0.00041 Score=69.95 Aligned_cols=173 Identities=15% Similarity=0.157 Sum_probs=98.0
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.+++|.+..++.+.+++.. ...+.|.|+|++|+|||++|+.+++.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 4689999888888876642 345689999999999999999999986 221 22222 2
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc----------------hhhccCCCCC--C
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD----------------LAQVGLPVSS--C 282 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~~--~ 282 (724)
.++..... +.. .......+.......+.++++|++..... ...+...+.. .
T Consensus 83 ~~l~~~~~---g~~--------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMWF---GES--------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHHH---TTC--------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhhc---Cch--------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 23332221 111 11122233333345789999999974210 1111111111 1
Q ss_pred CCCCcEEEEecCChHHHh-h-c---cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch
Q 048789 283 ASSSNKIVFTTREIEVCG-Q-M---EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 283 ~~g~s~iliTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
..+ ..||.||....... . . .-...+.+...+.++-.+++...+.........++ ..++..+.|.|=+
T Consensus 152 ~~~-v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSS-EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCC-EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 223 56777776553321 1 1 12346788888999888888877754332222333 3455567776643
No 188
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.82 E-value=0.00031 Score=73.67 Aligned_cols=171 Identities=12% Similarity=0.043 Sum_probs=95.3
Q ss_pred CccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++.+.+.+.. ...+-|.|+|.+|+|||++|+.+++.. .. ..+.++.+.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999887732 234689999999999999999998876 11 222333222110
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh-------------chhhccCCC---CC-CCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV-------------DLAQVGLPV---SS-CAS 284 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~---~~-~~~ 284 (724)
.. ...........+...-.....+|+||+++... ....+...+ .. ...
T Consensus 187 ~~---------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 KY---------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred cc---------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 01111222222222223466899999996430 001111111 01 012
Q ss_pred CCcEEEEecCChHH-----HhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 285 SSNKIVFTTREIEV-----CGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 285 g~s~iliTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
. ..||.||..... ... ....+.+...+.++...++...+...... -.......|++.+.|..-
T Consensus 252 ~-v~vI~atn~~~~l~~~l~~R--~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 252 R-VLVMGATNRPQELDEAVLRR--FIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSG 319 (389)
T ss_dssp C-EEEEEEESCGGGCCHHHHTT--CCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCH
T ss_pred C-EEEEEecCCchhcCHHHHcC--cceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCH
Confidence 2 455556654322 221 22357788889999999998877543311 123456788888988654
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00014 Score=74.89 Aligned_cols=171 Identities=15% Similarity=0.205 Sum_probs=96.8
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc-EEEEEEeCCcCCHHHHHHHHHHHcCC
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD-FVIWIVVSKDLQLAKIQEGIAKKMGL 233 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~~ 233 (724)
.++|.+..++.+...+..+....+.++|+.|+||||+|+.++.... ...+. .+.-++.+....
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~-------------- 89 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRG-------------- 89 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCS--------------
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCccccc--------------
Confidence 4689888888888888877665599999999999999999998862 11111 111122221111
Q ss_pred CccccCCcCHHHHHHHHHHHH------ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCChH-HHhhc-c
Q 048789 234 FNESWQSKGLEEKANKIFKIL------SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREIE-VCGQM-E 303 (724)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~~-v~~~~-~ 303 (724)
.+...+.+.... .+.+-++|+|++... ...+.+...+...... .+++++|.... +...+ .
T Consensus 90 ---------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 90 ---------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN-TRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp ---------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHT
T ss_pred ---------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC-eEEEEEecCccccchhHHh
Confidence 222222222221 134678999998642 2222222212111223 66666665432 11111 1
Q ss_pred CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch
Q 048789 304 AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA 354 (724)
Q Consensus 304 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 354 (724)
....+.+.+++.++..+.+.+.+........ ....+.+++.++|.+-.
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 2236788899999888888776632221111 34567788888887653
No 190
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.80 E-value=1.4e-05 Score=83.35 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=96.2
Q ss_pred CCcceEEEeecccccccC-hhhhhcCCCceEEEccCCC---CCchhh-----hccccCCeeecCCCCcc-----ccchHH
Q 048789 391 CPRLRTLFLSSNIFHRVN-SDFFQSMASLRVLKLSYSN---PLLFEI-----SKVVSLQHLDLSHSRIE-----RLPIEF 456 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~---~lp~~i-----~~L~~L~~L~L~~~~i~-----~Lp~~i 456 (724)
.+.|+.|++++|.+.... ...+..+++|+.|+|++|. .-...+ ...++|++|+|++|.+. .++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 468999999999865432 2334456789999999997 111222 24578999999999876 366667
Q ss_pred hccccCcEeecCCcccccc-----cChhhhcCCCcCcEEeccccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEc
Q 048789 457 KYLVNLKCLNLEYTYGVLK-----IPPKVISNLKILQTLRMYECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLN 531 (724)
Q Consensus 457 ~~L~~L~~L~l~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~ 531 (724)
..+++|++|+|++|. +.. ++.. +...++|++|++++|..... ........+...++|+.|+++.+
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~--------g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT--------AALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH--------HHHHHHHHHHHCSSCCEEECTTS
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH--------HHHHHHHHHHhCCCCCEEeccCC
Confidence 888999999999985 332 2333 67788999999998864321 12234566778889999999888
Q ss_pred chhh
Q 048789 532 NFHA 535 (724)
Q Consensus 532 ~~~~ 535 (724)
.+..
T Consensus 250 ~i~~ 253 (372)
T 3un9_A 250 ELSS 253 (372)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 7754
No 191
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=1e-05 Score=79.27 Aligned_cols=81 Identities=19% Similarity=0.120 Sum_probs=58.0
Q ss_pred hhcCCCceEEEccCCC--C---CchhhhccccCCeeecCCCCccccchHHhccc--cCcEeecCCcccccccCh------
Q 048789 412 FQSMASLRVLKLSYSN--P---LLFEISKVVSLQHLDLSHSRIERLPIEFKYLV--NLKCLNLEYTYGVLKIPP------ 478 (724)
Q Consensus 412 ~~~l~~Lr~L~l~~~~--~---lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~--~L~~L~l~~~~~~~~lp~------ 478 (724)
..++++|+.|+|++|. . +|..+..+++|++|+|++|.+..+ ..+..+. +|+.|+|.+|+....+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3567888888888888 3 335667888888888888888876 3455555 888888888865444552
Q ss_pred hhhcCCCcCcEEecc
Q 048789 479 KVISNLKILQTLRMY 493 (724)
Q Consensus 479 ~~i~~l~~L~~L~l~ 493 (724)
.++..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 346778888888754
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.78 E-value=0.0006 Score=72.71 Aligned_cols=173 Identities=13% Similarity=0.131 Sum_probs=96.0
Q ss_pred CccccchhhHHHHHHHhh------------cCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLM------------EEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++.+.+.+. ....+.|.++|++|+|||++|+.+++.. . .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~-----~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS-----TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC-----CEEEEeHHH---
Confidence 468999999998887763 1234689999999999999999999986 1 11 123333221
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh-------------chhhccCCCCC---CCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV-------------DLAQVGLPVSS---CASS 285 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~---~~~g 285 (724)
+.... .+. ......... ...-..++.+|+||++.... ....+...+.. ...+
T Consensus 204 -l~~~~---~g~-----~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVSKW---LGE-----SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHhhh---cch-----HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11110 110 111222222 22224578899999997531 01122222211 1233
Q ss_pred CcEEEEecCChHHHh-h-c-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 286 SNKIVFTTREIEVCG-Q-M-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 286 ~s~iliTtr~~~v~~-~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
..||.||....... . . .....+.+...+.++...+|..++....... -......|++.+.|..
T Consensus 272 -v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 272 -ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYS 337 (444)
T ss_dssp -CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCC
T ss_pred -EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCC
Confidence 56666776543211 0 0 1224566777788888888888775432111 1344677888898854
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.78 E-value=6.8e-05 Score=77.47 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=54.9
Q ss_pred CCcceEEEeeccccc-ccC-------hhhhhcCCCceEEEccCCC------------CCchhhhccccCCeeecCCCCcc
Q 048789 391 CPRLRTLFLSSNIFH-RVN-------SDFFQSMASLRVLKLSYSN------------PLLFEISKVVSLQHLDLSHSRIE 450 (724)
Q Consensus 391 ~~~Lr~L~l~~~~~~-~~~-------~~~~~~l~~Lr~L~l~~~~------------~lp~~i~~L~~L~~L~L~~~~i~ 450 (724)
...++.|.+..+... ... ......+++|+.|.+.... .++..+..+++|+.|+|+++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 356677777655422 111 1123456778888775432 24444566777888888776322
Q ss_pred ccchHHhccccCcEeecCCcccccccChhhh--cCCCcCcEEecc
Q 048789 451 RLPIEFKYLVNLKCLNLEYTYGVLKIPPKVI--SNLKILQTLRMY 493 (724)
Q Consensus 451 ~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i--~~l~~L~~L~l~ 493 (724)
.+|. + .+.+|++|++..|. +..-.-..+ ..+++|++|+++
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEE
T ss_pred eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEe
Confidence 4443 3 36778888877663 211110112 267778887775
No 194
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.74 E-value=0.00055 Score=70.07 Aligned_cols=167 Identities=15% Similarity=0.131 Sum_probs=95.7
Q ss_pred hhhHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccCCCC-------------------CCcEEEEEEeCCcCC
Q 048789 160 QSTFDGVWKCLMEEQ-MGIVGLYGMGGVGKTTLLTQINNKFLDTPN-------------------SFDFVIWIVVSKDLQ 219 (724)
Q Consensus 160 ~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~v~~~~~ 219 (724)
++..+.+.+.+..++ .+.+.++|+.|+|||++|+.+.+....... +++. .++....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~--- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEK--- 83 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCT---
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccc---
Confidence 445667777776655 457999999999999999999987621110 1221 1221110
Q ss_pred HHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-----ccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEe
Q 048789 220 LAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-----SKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFT 292 (724)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliT 292 (724)
.......++..+ +.+.+ .+++-++|+|+++.- ...+.+...+.....+ ..+|++
T Consensus 84 -----------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~-~~~Il~ 144 (334)
T 1a5t_A 84 -----------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAE-TWFFLA 144 (334)
T ss_dssp -----------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTT-EEEEEE
T ss_pred -----------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCC-eEEEEE
Confidence 001122332222 22222 246778999999753 2222232222222233 666666
Q ss_pred cCChH-HHhhc-cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 293 TREIE-VCGQM-EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 293 tr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
|...+ +...+ .....+.+.+++.++..+.+.+.. . . -.+....+++.++|.|..+..
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~---~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T--M---SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--C---CHHHHHHHHHHTTTCHHHHHH
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--C---CHHHHHHHHHHcCCCHHHHHH
Confidence 65543 22211 223478899999999999888775 1 1 134457789999999976544
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00029 Score=72.61 Aligned_cols=196 Identities=18% Similarity=0.227 Sum_probs=108.7
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.+|+++++.. ...| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 4578899888888775531 245679999999999999999999987 2222 3333322110
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHH-HHccCceEEEeccccChh----------c------hhhccCCCCC--
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFK-ILSKKKFVLLLDDIWELV----------D------LAQVGLPVSS-- 281 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------~------~~~l~~~~~~-- 281 (724)
. ....+ +...+.+.. .-...+++|++|+++... + ...+...+..
T Consensus 221 -------------k---~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 -------------K---YIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp -------------S---STTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred -------------c---ccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0 01111 222223333 334578999999987521 0 1111111111
Q ss_pred CCCCCcEEEEecCChHH-----HhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch--
Q 048789 282 CASSSNKIVFTTREIEV-----CGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA-- 354 (724)
Q Consensus 282 ~~~g~s~iliTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla-- 354 (724)
...+ -.||.||...+. .....-+..+.+..-+.++-.++|..+..........++ ..+++.+.|.-=|
T Consensus 284 ~~~~-V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~SGADi 358 (405)
T 4b4t_J 284 TSKN-IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCSGADV 358 (405)
T ss_dssp CCCC-EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCCHHHH
T ss_pred CCCC-eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCCHHHH
Confidence 1223 456667765443 222233567888888888889999887755443333343 5566777775432
Q ss_pred --HHHHHHH--HhcC---CChhHHHHHHHHH
Q 048789 355 --LITVGRA--MASR---KTPREWEHAIEVL 378 (724)
Q Consensus 355 --i~~~~~~--l~~~---~~~~~w~~~~~~l 378 (724)
+..-|.+ ++.. -+.++++.+++..
T Consensus 359 ~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 359 KGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 1111222 2322 3456777766554
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.66 E-value=4.7e-05 Score=70.70 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=40.3
Q ss_pred CCcceEEEeecc-ccccc----ChhhhhcCCCceEEEccCCC-------CCchhhhccccCCeeecCCCCcc-----ccc
Q 048789 391 CPRLRTLFLSSN-IFHRV----NSDFFQSMASLRVLKLSYSN-------PLLFEISKVVSLQHLDLSHSRIE-----RLP 453 (724)
Q Consensus 391 ~~~Lr~L~l~~~-~~~~~----~~~~~~~l~~Lr~L~l~~~~-------~lp~~i~~L~~L~~L~L~~~~i~-----~Lp 453 (724)
.+.|++|++++| .+... ....+...++|++|+|++|. .+...+...++|++|+|++|.+. .+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 456666666666 54322 12223445566666666665 23333444455666666666554 234
Q ss_pred hHHhccccCcEeec
Q 048789 454 IEFKYLVNLKCLNL 467 (724)
Q Consensus 454 ~~i~~L~~L~~L~l 467 (724)
..+...++|++|++
T Consensus 115 ~~L~~n~~L~~L~L 128 (185)
T 1io0_A 115 EALQSNTSLIELRI 128 (185)
T ss_dssp HGGGGCSSCCEEEC
T ss_pred HHHHhCCCceEEEe
Confidence 44455555666666
No 197
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=3.6e-05 Score=69.69 Aligned_cols=36 Identities=6% Similarity=0.204 Sum_probs=19.1
Q ss_pred CcceEEEeecccccccChhhhhcCCCceEEEccCCC
Q 048789 392 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN 427 (724)
Q Consensus 392 ~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~ 427 (724)
..|+.|++++|.++...-..+..+++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 346666666665444433334555555555555554
No 198
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.61 E-value=0.00028 Score=74.33 Aligned_cols=102 Identities=14% Similarity=0.232 Sum_probs=64.1
Q ss_pred CCCCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCc-hhhhccccCCeeecCCCCcccc-------------
Q 048789 388 SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLL-FEISKVVSLQHLDLSHSRIERL------------- 452 (724)
Q Consensus 388 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp-~~i~~L~~L~~L~L~~~~i~~L------------- 452 (724)
+..|.+|+.+.+..+ +..+....|.++.+|+.+++..+- .++ ..+..+..|+.+.+..+ +..+
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 567888999988755 777778889999999999886554 332 24556666666655432 1111
Q ss_pred --c--------hHHhccccCcEeecCCcccccccChhhhcCCCcCcEEecc
Q 048789 453 --P--------IEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMY 493 (724)
Q Consensus 453 --p--------~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~ 493 (724)
| ..+..+.+|+.+.+..+ +..++...+..+.+|+.+.+.
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred ccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcC
Confidence 1 12445566666666544 345665556666666666654
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.58 E-value=0.0004 Score=74.59 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=81.8
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCC--CCC-c-EEEEEEeCCcCCHHHHHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTP--NSF-D-FVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.++||+.++..+.+.|......-+.++|++|+|||++|+.++....... ... + ..+.++.+ ..
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~ 247 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TK 247 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------cc
Confidence 5899999999999999876666778999999999999999998862110 000 1 11222222 00
Q ss_pred cCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHh-------hcc
Q 048789 231 MGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCG-------QME 303 (724)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~-------~~~ 303 (724)
..+. ....... .+...-..++.++++|. .......+...+. .|..++|.+|....... ...
T Consensus 248 ~~g~----~e~~~~~---~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 248 YRGE----FEDRLKK---VMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp ---------CTTHHH---HHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ccch----HHHHHHH---HHHHHHhcCCeEEEEeC--chhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 0000 0111222 22222235678999991 1122222333332 22256666665543111 001
Q ss_pred CccceeeccCChHHHHHHHHHHhCC
Q 048789 304 AHRSFKVECLGFDDAWKLFEEKVGR 328 (724)
Q Consensus 304 ~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (724)
....+.+.+.+.++...++...+..
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHHH
Confidence 1235888999999999999876543
No 200
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.58 E-value=0.00013 Score=64.57 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999887753 333457899999999999999999875
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00047 Score=72.03 Aligned_cols=172 Identities=15% Similarity=0.182 Sum_probs=96.8
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ... .+.++.+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~-- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELV-- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhh--
Confidence 3578888888888775421 356789999999999999999999987 222 2333322211
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc----------------hhhccCCCCCC-C
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD----------------LAQVGLPVSSC-A 283 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~~~-~ 283 (724)
.. ....+...+...+...-...+++|++|++..... ...+...+... .
T Consensus 281 ------------sk---~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 281 ------------QK---YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ------------CC---SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ------------cc---cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 00 0111222222222233345789999999874210 01111111111 1
Q ss_pred CCCcEEEEecCChHH-----HhhccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 284 SSSNKIVFTTREIEV-----CGQMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 284 ~g~s~iliTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
.++..||.||...+. .....-+..+.+..-+.++-.++|..++.........++ ..|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 221455667765433 111123456778888888889999887754432333333 55677777754
No 202
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00033 Score=73.37 Aligned_cols=170 Identities=15% Similarity=0.211 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 4578898888888776531 246789999999999999999999997 222 23333322110
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHH-HHccCceEEEeccccChh----------------chhhccCCCC--C
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFK-ILSKKKFVLLLDDIWELV----------------DLAQVGLPVS--S 281 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~ 281 (724)
. ....+ +.....+.. .-...+++|++|+++... .+..+...+. .
T Consensus 254 -------------k---~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 -------------K---YIGES-ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp -------------S---SSSHH-HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred -------------c---cchHH-HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0 01111 222223333 334578999999997421 0111111111 1
Q ss_pred CCCCCcEEEEecCChHHHhh--cc---CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 282 CASSSNKIVFTTREIEVCGQ--ME---AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 282 ~~~g~s~iliTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
...+ ..||.||...+..+. .. -+..+.+..-+.++-.++|..+..........++ ..+++.+.|.-
T Consensus 317 ~~~~-vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQ-TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTS-SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCC-eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 1223 567777776544221 11 2345777777888888888877654332223343 45666676654
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=6.4e-05 Score=69.81 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=83.8
Q ss_pred hhhhhcCCCceEEEccCC-C-------CCchhhhccccCCeeecCCCCcc-----ccchHHhccccCcEeecCCcccccc
Q 048789 409 SDFFQSMASLRVLKLSYS-N-------PLLFEISKVVSLQHLDLSHSRIE-----RLPIEFKYLVNLKCLNLEYTYGVLK 475 (724)
Q Consensus 409 ~~~~~~l~~Lr~L~l~~~-~-------~lp~~i~~L~~L~~L~L~~~~i~-----~Lp~~i~~L~~L~~L~l~~~~~~~~ 475 (724)
...+...+.|+.|+|+++ . .+...+...++|++|+|++|.+. .+...+...++|++|+|++|. +..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 445677899999999999 5 34556677889999999999876 456667777899999999985 332
Q ss_pred -----cChhhhcCCCcCcEEec--cccCCCcccccccccCCcccchHHhhcCCCCCeEEEEEcchhh
Q 048789 476 -----IPPKVISNLKILQTLRM--YECATVPQARDSILFGDCRVLVEELLCLEHLSVFTITLNNFHA 535 (724)
Q Consensus 476 -----lp~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~ 535 (724)
+... +...++|++|++ .+|..... ........+...+.|+.|+++.+.+..
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~--------g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNN--------VEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH--------HHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHH--------HHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3333 677789999999 65643211 122234556677888888888777643
No 204
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=6.1e-05 Score=68.20 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=56.4
Q ss_pred CCceEEEccCCC---CCchhhhccccCCeeecCCC-Ccccc-chHHhcc----ccCcEeecCCcccccccChhhhcCCCc
Q 048789 416 ASLRVLKLSYSN---PLLFEISKVVSLQHLDLSHS-RIERL-PIEFKYL----VNLKCLNLEYTYGVLKIPPKVISNLKI 486 (724)
Q Consensus 416 ~~Lr~L~l~~~~---~lp~~i~~L~~L~~L~L~~~-~i~~L-p~~i~~L----~~L~~L~l~~~~~~~~lp~~~i~~l~~ 486 (724)
..|+.||+++|. .-...+..+++|++|+|++| .++.- -..+..+ .+|++|+|++|..++.---..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999887 33345678888999999888 46521 1224443 368888888886444322222667888
Q ss_pred CcEEeccccCCCc
Q 048789 487 LQTLRMYECATVP 499 (724)
Q Consensus 487 L~~L~l~~~~~~~ 499 (724)
|++|++++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888888887554
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.53 E-value=0.00023 Score=82.68 Aligned_cols=153 Identities=14% Similarity=0.239 Sum_probs=83.2
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccC--CCCC--CcEEEEEEeCCcCCHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLD--TPNS--FDFVIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~~--f~~~~wv~v~~~~~~~~~~~~i~~ 229 (724)
+.++||+.++.++++.|.......+.++|.+|+||||+|+.+++.... +... -..+++++.+.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 358999999999999998766667899999999999999999987621 1011 11233343321100
Q ss_pred HcCCCccccCCcCHHHHHHHHHHHHc--cCceEEEeccccChhc-------hh---hccCCCCCCCCCCcEEEEecCChH
Q 048789 230 KMGLFNESWQSKGLEEKANKIFKILS--KKKFVLLLDDIWELVD-------LA---QVGLPVSSCASSSNKIVFTTREIE 297 (724)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~---~l~~~~~~~~~g~s~iliTtr~~~ 297 (724)
+.. .....+.....+.+.+. +++.+|++|++..... ++ .+...+. .+...+|.+|....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchH
Confidence 000 11122333333333332 3678999999975320 11 1111111 12145665555433
Q ss_pred HH-----hhc-cCccceeeccCChHHHHHHHHHH
Q 048789 298 VC-----GQM-EAHRSFKVECLGFDDAWKLFEEK 325 (724)
Q Consensus 298 v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 325 (724)
.. ..+ .....+.+++.+.++..+++...
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 21 111 11235889999999999888754
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.50 E-value=0.00097 Score=71.61 Aligned_cols=170 Identities=14% Similarity=0.151 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
..++|.+..++++.+++.. ...+-|.|+|++|+|||++|+.+++.. .. ..+.++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~------ 271 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLING------ 271 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEc------
Confidence 3579999999998887642 345679999999999999999998876 22 2233332
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh-------------chhhccCCCCC--CCCC
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV-------------DLAQVGLPVSS--CASS 285 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~g 285 (724)
. .+...+ ...........+.....+++.+|+||++.... ....+...+.. ...+
T Consensus 272 ~----~l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 272 P----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp H----HHHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred h----Hhhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1 111111 11112223334444455678899999984210 01111111111 1122
Q ss_pred CcEEEEecCChHH-Hhhc----cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCC
Q 048789 286 SNKIVFTTREIEV-CGQM----EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGL 351 (724)
Q Consensus 286 ~s~iliTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 351 (724)
.+||.||..... ...+ .-...+.+...+.++-.+++..++..........+ ..+++.+.|.
T Consensus 341 -v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~ 406 (489)
T 3hu3_A 341 -VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (489)
T ss_dssp -EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTC
T ss_pred -eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCC
Confidence 566667765432 1111 22345788888999999999988754432222333 4456666664
No 207
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.50 E-value=0.00014 Score=71.99 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME------------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+++|.+..++.+.+.+.. ...+-+.|+|++|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999888887766541 123347899999999999999999987
No 208
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0009 Score=69.17 Aligned_cols=197 Identities=20% Similarity=0.241 Sum_probs=106.1
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.+|+++++.. ...| +.++.+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l--- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSEL--- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGG---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHh---
Confidence 4578899888888775531 245789999999999999999999997 2222 22332211
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH-HccCceEEEeccccChh----------------chhhccCCCC--C
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI-LSKKKFVLLLDDIWELV----------------DLAQVGLPVS--S 281 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~ 281 (724)
... .... .+.....+... -...+++|++|+++... ....+...+. .
T Consensus 253 -----------~sk---~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 253 -----------IQK---YLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -----------CCS---SSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -----------hhc---cCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 000 0111 12223333332 24578999999987421 0111111111 1
Q ss_pred CCCCCcEEEEecCChHHHhh--c---cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCch--
Q 048789 282 CASSSNKIVFTTREIEVCGQ--M---EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLA-- 354 (724)
Q Consensus 282 ~~~g~s~iliTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla-- 354 (724)
...+ ..||.||...+..+. . .-+..+.+..-+.++-.++|..++.......+.++ ..|++.+.|.-=|
T Consensus 318 ~~~~-ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfSGADI 392 (437)
T 4b4t_I 318 DRGD-VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLSGADI 392 (437)
T ss_dssp CSSS-EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCCHHHH
T ss_pred CCCC-EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCCHHHH
Confidence 1222 456667766554221 1 12345677777888888899887754432333344 4566677665422
Q ss_pred --HHHHHH--HHhcC---CChhHHHHHHHHHh
Q 048789 355 --LITVGR--AMASR---KTPREWEHAIEVLR 379 (724)
Q Consensus 355 --i~~~~~--~l~~~---~~~~~w~~~~~~l~ 379 (724)
+..-|. .++.. -+.++++.+++.+.
T Consensus 393 ~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~ 424 (437)
T 4b4t_I 393 QAMCTEAGLLALRERRMQVTAEDFKQAKERVM 424 (437)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Confidence 111122 22222 24567777666543
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0003 Score=73.63 Aligned_cols=170 Identities=14% Similarity=0.177 Sum_probs=94.8
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ... .+.++.+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l--- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQL--- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGG---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhh---
Confidence 4578999988888776431 246789999999999999999999987 222 233332221
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHH-HHccCceEEEeccccChh------------c----hhhccCCCCCC-
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFK-ILSKKKFVLLLDDIWELV------------D----LAQVGLPVSSC- 282 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~- 282 (724)
.... .... +.....+.. .-...+++|++|+++... . ...+...+...
T Consensus 252 -----------~~~~---vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 252 -----------VQMY---IGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp -----------CSSC---SSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred -----------hhcc---cchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0000 1111 222233332 334578999999986420 0 01111111111
Q ss_pred -CCCCcEEEEecCChHHHhh-----ccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 283 -ASSSNKIVFTTREIEVCGQ-----MEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 283 -~~g~s~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
..+ -.||.||...+..+. ..-+..+.+..-+.++-.++|..++........-++ ..|++.+.|.-
T Consensus 317 ~~~~-ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDR-VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp SSCS-SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred CCCC-EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 122 455667766543221 112346777777888888888776643332222333 55667777654
No 210
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.0007 Score=67.98 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=85.7
Q ss_pred cchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCC-CCCcEEEEEEeCC-cCCHHHHHHHHHHHcCCCc
Q 048789 158 GLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTP-NSFDFVIWIVVSK-DLQLAKIQEGIAKKMGLFN 235 (724)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~ 235 (724)
|-++.++.+.+.+..+..+...++|+.|+||||+|+.+.+...... .+.+. .++..+. ...+.++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 3455667777777776678999999999999999999987531111 23343 3343322 2233222 22333332111
Q ss_pred cccCCcCHHHHHHHHHHHHccCceEEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCCh-HHHhhccCccceeecc
Q 048789 236 ESWQSKGLEEKANKIFKILSKKKFVLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREI-EVCGQMEAHRSFKVEC 312 (724)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~-~v~~~~~~~~~~~l~~ 312 (724)
..+++-++|+|+++.- ...+.+...+...... +.+|++|.+. .+...+... .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~-t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEY-AVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTT-EEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCC-eEEEEEECChHhChHHHHce-eEeCCC
Confidence 0245678999998752 2333333222222233 6666665443 343333344 899999
Q ss_pred CChHHHHHHHHHHh
Q 048789 313 LGFDDAWKLFEEKV 326 (724)
Q Consensus 313 L~~~~~~~lf~~~~ 326 (724)
+++++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999888776
No 211
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.43 E-value=0.00013 Score=75.40 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=66.2
Q ss_pred CCCcceEEEeecccc---------cccChhhhhcCCCceEEEccCCC--CCchhhhccccCCeeecCCCCccc-cchHHh
Q 048789 390 VCPRLRTLFLSSNIF---------HRVNSDFFQSMASLRVLKLSYSN--PLLFEISKVVSLQHLDLSHSRIER-LPIEFK 457 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~---------~~~~~~~~~~l~~Lr~L~l~~~~--~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~i~ 457 (724)
.+++|+.|.+.+... .......+..+++|+.|+++++. .+|. + .+++|+.|+|..|.+.. -...+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 357888998865421 11244567889999999999885 5554 4 48999999999887652 112333
Q ss_pred --ccccCcEeecCCcc--c-----ccccChhhh--cCCCcCcEEeccccC
Q 048789 458 --YLVNLKCLNLEYTY--G-----VLKIPPKVI--SNLKILQTLRMYECA 496 (724)
Q Consensus 458 --~L~~L~~L~l~~~~--~-----~~~lp~~~i--~~l~~L~~L~l~~~~ 496 (724)
.+++|++|+|+.+. . +..+..- + ..+++|++|++..|.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCT
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCC
Confidence 78999999985321 1 1111111 1 246777777776553
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0012 Score=68.94 Aligned_cols=46 Identities=30% Similarity=0.336 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999888888776531 245679999999999999999999987
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.41 E-value=0.0026 Score=62.27 Aligned_cols=197 Identities=19% Similarity=0.156 Sum_probs=101.3
Q ss_pred CccccchhhHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLM---E---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++.. ...| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 468999888777665432 1 123468899999999999999999987 2222 3332221100
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh----------------chhhccCCCC--CCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV----------------DLAQVGLPVS--SCA 283 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~ 283 (724)
.. ...........+.........++++|++.... ....+...+. ...
T Consensus 84 --------~~-------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------SC-------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------Hh-------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00 11222233333334444567899999984311 0111111110 012
Q ss_pred CCCcEEEEecCChHHH-hhc-c---CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCC-CCchHHH
Q 048789 284 SSSNKIVFTTREIEVC-GQM-E---AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGG-LPLALIT 357 (724)
Q Consensus 284 ~g~s~iliTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~ 357 (724)
.+ ..||.||...+.. ..+ . -...+.+...+.++-.+++..++.......... ...++..+.| .+--+..
T Consensus 149 ~~-~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EG-IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SC-EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CC-EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 23 5666677654321 111 1 133566777778888888877764432222222 2446667777 5544432
Q ss_pred HH---H--HHhc---CCChhHHHHHHHHH
Q 048789 358 VG---R--AMAS---RKTPREWEHAIEVL 378 (724)
Q Consensus 358 ~~---~--~l~~---~~~~~~w~~~~~~l 378 (724)
+. . .... .-+.++++.+++..
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 21 1 1111 13556666666544
No 214
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.0012 Score=75.87 Aligned_cols=154 Identities=16% Similarity=0.229 Sum_probs=89.7
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCC---CCcEEEEE-EeCCcCCHHHHHHHHHH
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPN---SFDFVIWI-VVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~---~f~~~~wv-~v~~~~~~~~~~~~i~~ 229 (724)
+.++||+.++.++.+.|......-+.++|.+|+|||++|+.+++....... .....++. ..+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 358999999999999998777777899999999999999999987621110 11222221 11110
Q ss_pred HcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccCh----------hc-hhhccCCCCCCCCCCcEEEEecCChH
Q 048789 230 KMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWEL----------VD-LAQVGLPVSSCASSSNKIVFTTREIE 297 (724)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~-~~~l~~~~~~~~~g~s~iliTtr~~~ 297 (724)
+.... .....+.....+.+.+ ..++.+|++||+... .+ ...+...+.. .+ .++|.+|....
T Consensus 254 -~~~~~---~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~-~~~I~at~~~~ 326 (758)
T 1r6b_X 254 -LAGTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GK-IRVIGSTTYQE 326 (758)
T ss_dssp --CCCC---CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CC-CEEEEEECHHH
T ss_pred -hcccc---ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CC-eEEEEEeCchH
Confidence 00000 1223343444444444 345789999999753 11 1123333322 22 56666666544
Q ss_pred HHhhcc-------CccceeeccCChHHHHHHHHHHh
Q 048789 298 VCGQME-------AHRSFKVECLGFDDAWKLFEEKV 326 (724)
Q Consensus 298 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~ 326 (724)
...... ....+.+...+.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 321111 11257888999999888887654
No 215
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.39 E-value=8.2e-05 Score=68.75 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=29.4
Q ss_pred hhhHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 160 QSTFDGVWKCLME---EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+...+.+.+++.+ .....+.|+|++|+||||||+.+++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444444433 245789999999999999999999887
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.33 E-value=0.0011 Score=70.64 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=95.2
Q ss_pred CccccchhhHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLM---E---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.++.++++.+.+. . .-.+-|.|+|++|+|||++|+.+++.. ...| +.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468999888777766542 1 123458899999999999999999987 2222 23333221110
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh----------------chhhccCCCC--CCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV----------------DLAQVGLPVS--SCA 283 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~ 283 (724)
. ...........+.......+.+|+||++.... ....+...+. ...
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 11111222333444445678999999995421 1112211111 011
Q ss_pred CCCcEEEEecCChHHHhh--cc---CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 284 SSSNKIVFTTREIEVCGQ--ME---AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 284 ~g~s~iliTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
.+ ..||.||...+.... .. -...+.+...+.++-.+++..++.........+ ...+++.+.|..
T Consensus 153 ~~-viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EG-IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GT-EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CC-EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 23 567777776654221 11 223677788888888888877765433222222 344777788876
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.33 E-value=0.0014 Score=75.22 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCC--cEEEEEEeCCcCCHHHHHHHHHHHc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSF--DFVIWIVVSKDLQLAKIQEGIAKKM 231 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~i~~~l 231 (724)
+.++||+.+++++.+.|......-+.++|++|+|||++|+.+++........+ ...-++.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 35899999999999999876666789999999999999999998862211110 0111111111
Q ss_pred CCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHHhhc-------cC
Q 048789 232 GLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVCGQM-------EA 304 (724)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~~~~-------~~ 304 (724)
+............ ..+......++.+|++|. .......+...+. .|..++|.+|......... ..
T Consensus 245 g~~~~G~~e~~l~---~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 GTKYRGEFEDRLK---KVMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp --------CTTHH---HHHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred cccccchHHHHHH---HHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 0000000111222 222333346788999992 1111122322322 2325666666554421100 11
Q ss_pred ccceeeccCChHHHHHHHHHHhC
Q 048789 305 HRSFKVECLGFDDAWKLFEEKVG 327 (724)
Q Consensus 305 ~~~~~l~~L~~~~~~~lf~~~~~ 327 (724)
...+.+...+.++...++.....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 23588899999999999986554
No 218
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.30 E-value=0.00047 Score=64.92 Aligned_cols=86 Identities=26% Similarity=0.258 Sum_probs=49.3
Q ss_pred hHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc
Q 048789 162 TFDGVWKCLMEE----QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES 237 (724)
Q Consensus 162 ~~~~l~~~L~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 237 (724)
.++.+.+++... ....+.|+|++|+|||+||+.+++... .....+++++. ..+...+......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~---- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV------PELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH------HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh------HHHHHHHHHHhcc----
Confidence 344455555432 127899999999999999999999873 22234555543 3444444433211
Q ss_pred cCCcCHHHHHHHHHHHHccCceEEEeccccC
Q 048789 238 WQSKGLEEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
......... +... -+|||||++.
T Consensus 104 ---~~~~~~~~~----~~~~-~~lilDei~~ 126 (202)
T 2w58_A 104 ---QTMNEKLDY----IKKV-PVLMLDDLGA 126 (202)
T ss_dssp ---CCCHHHHHH----HHHS-SEEEEEEECC
T ss_pred ---chHHHHHHH----hcCC-CEEEEcCCCC
Confidence 112222222 2222 3999999965
No 219
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.26 E-value=0.00012 Score=64.63 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|++..+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999988888887653 333457899999999999999998765
No 220
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00051 Score=67.16 Aligned_cols=78 Identities=26% Similarity=0.254 Sum_probs=62.7
Q ss_pred CCCcceEEEeecccccccC--hhhhhcCCCceEEEccCCC-CCchhhhccc--cCCeeecCCCCcc-ccc-------hHH
Q 048789 390 VCPRLRTLFLSSNIFHRVN--SDFFQSMASLRVLKLSYSN-PLLFEISKVV--SLQHLDLSHSRIE-RLP-------IEF 456 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~-~lp~~i~~L~--~L~~L~L~~~~i~-~Lp-------~~i 456 (724)
.+++|++|+|++|.+..+. +..+..+++|++|+|++|. .-...+..+. +|++|+|++|.+. .+| ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 3578999999999987743 4667899999999999999 4445566666 9999999999876 454 246
Q ss_pred hccccCcEeec
Q 048789 457 KYLVNLKCLNL 467 (724)
Q Consensus 457 ~~L~~L~~L~l 467 (724)
..+++|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 78999999984
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.00015 Score=64.43 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-..++|+|..|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55689999999999999999999987
No 222
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.13 E-value=0.0063 Score=62.12 Aligned_cols=168 Identities=18% Similarity=0.175 Sum_probs=90.1
Q ss_pred ccccchhhHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHH
Q 048789 155 TVVGLQSTFDGVWKCLME-----EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 229 (724)
.++|.+..++.+...+.. .....+.++|++|+||||||+.+++.. . ..|. .++-+......+
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l-~--~~~~---~~sg~~~~~~~~------- 92 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL-Q--TNIH---VTSGPVLVKQGD------- 92 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH-T--CCEE---EEETTTCCSHHH-------
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh-C--CCEE---EEechHhcCHHH-------
Confidence 578888777777666543 245689999999999999999999987 2 2221 111111011111
Q ss_pred HcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh--chhhccCCCCCC--------C----------CCCcEE
Q 048789 230 KMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV--DLAQVGLPVSSC--------A----------SSSNKI 289 (724)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~--------~----------~g~s~i 289 (724)
... +...+ .++.++++|++.... ..+.+...+... . .. ..+
T Consensus 93 ----------------l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~-~~l 153 (334)
T 1in4_A 93 ----------------MAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP-FTL 153 (334)
T ss_dssp ----------------HHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC-CEE
T ss_pred ----------------HHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC-eEE
Confidence 111 11111 234567778775421 111110000000 0 01 112
Q ss_pred -EEecCChHHHhhcc--CccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 290 -VFTTREIEVCGQME--AHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 290 -liTtr~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
-.|++...+...+. ....+.+++.+.++-.+++.+.+....... -.+.+..|++.+.|.|..+..
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTTCHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCCChHHHHH
Confidence 23444333211111 123478999999999999988764322111 245688899999999975543
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.11 E-value=0.0016 Score=65.93 Aligned_cols=45 Identities=27% Similarity=0.402 Sum_probs=37.8
Q ss_pred ccccchhhHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLMEE---------QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 5789999988888877542 23589999999999999999999987
No 224
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.97 E-value=0.0032 Score=66.08 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=33.6
Q ss_pred cChhhhhcCCCceEEEccCCC-CCc-hhhhccccCCeeecCCCCccccch-HHhccccCcEeecCCc
Q 048789 407 VNSDFFQSMASLRVLKLSYSN-PLL-FEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLNLEYT 470 (724)
Q Consensus 407 ~~~~~~~~l~~Lr~L~l~~~~-~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~ 470 (724)
.....|..+.+|+.+.+..+. .++ ..+.++.+|+.+.+..+ ++.++. .+.++..|+.+.+..+
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 344456666777777665544 222 24555666666666544 333332 2445555665555443
No 225
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.88 E-value=0.0042 Score=70.18 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=95.8
Q ss_pred ccccchhhHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 155 TVVGLQSTFDGVWKCLM----E---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ..+ .+.|+.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH------
Confidence 46788888888777652 1 245689999999999999999999986 222 2333321
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChhc-------------hhhccCCCCC--CCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELVD-------------LAQVGLPVSS--CASSS 286 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~--~~~g~ 286 (724)
+ +.... .......+...+.......+++|++|+++.... ..++...+.. ...+
T Consensus 273 ~----l~sk~-------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~- 340 (806)
T 3cf2_A 273 E----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH- 340 (806)
T ss_dssp H----HHSSC-------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC-
T ss_pred H----hhccc-------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC-
Confidence 1 11110 112223333333444456789999999875210 1111111111 1112
Q ss_pred cEEEEecCChHHH-hhc----cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCc
Q 048789 287 NKIVFTTREIEVC-GQM----EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPL 353 (724)
Q Consensus 287 s~iliTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 353 (724)
-.||.||...+.. ..+ .-...+.+..-+.++-.++|..+........+.+ ...|++++.|.--
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 3455566554331 111 1234677888888888888887765433223333 3557777877653
No 226
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.85 E-value=0.0082 Score=62.94 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=8.9
Q ss_pred ccccccccceEEeec
Q 048789 568 SLASLRHLQTLHLTY 582 (724)
Q Consensus 568 ~l~~~~~L~~L~l~~ 582 (724)
++..+.+|+.+.+..
T Consensus 260 aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD 274 (394)
T ss_dssp TTTTCSSCCEEECCT
T ss_pred eeeecccccEEeccc
Confidence 455566666666643
No 227
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.85 E-value=0.02 Score=56.42 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=79.9
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.++.+++|.+.+.. .-.+-+.++|++|+||||||+.++... . . ..+.+....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 4577888877777664421 112239999999999999999999986 2 1 2344442221100
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChhc-------------hhhccCCCCCCC--C
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELVD-------------LAQVGLPVSSCA--S 284 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~~--~ 284 (724)
...........+.+.. ...++++++|++..... ...+...+..+. .
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111222333322 34678999999864210 001111111111 1
Q ss_pred CCcEEEEecCChHHHhh-----ccCccceeeccCChHHHHHHHHHHhC
Q 048789 285 SSNKIVFTTREIEVCGQ-----MEAHRSFKVECLGFDDAWKLFEEKVG 327 (724)
Q Consensus 285 g~s~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (724)
. .-++.+|....+.+. ..-+..+.+...+.++-.++|.....
T Consensus 146 ~-~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 Q-VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp C-EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred C-EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 2 345556666554321 12345677888888888888887763
No 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.76 E-value=0.013 Score=62.72 Aligned_cols=168 Identities=14% Similarity=0.150 Sum_probs=88.7
Q ss_pred CccccchhhHHHHHHHhh---cC---------CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLM---EE---------QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
.+++|.++.+.++.+... .. -.+-|.|+|++|+||||||+.++... . . ..+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-~--~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-T--C---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-C--C---CEEEEehhHHHH--
Confidence 468999887777665432 21 12348999999999999999999986 2 2 223333321100
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHc----cCceEEEeccccChh----------------chhhccCCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKILS----KKKFVLLLDDIWELV----------------DLAQVGLPVSS 281 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~----------------~~~~l~~~~~~ 281 (724)
.........++...+ ....++++|++.... ....+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 000111222333332 235799999985321 01122111211
Q ss_pred CC-CCCcEEEEecCChHHHhh--c---cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 282 CA-SSSNKIVFTTREIEVCGQ--M---EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 282 ~~-~g~s~iliTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
+. .....++.+|...++... . .-...+.+...+.++-.+++..++.........+ ...|+..+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 11 111445556666554221 1 1234677888888888888877654322121222 344666677765
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.68 E-value=0.0025 Score=73.09 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME---------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+.+.+.. .....+.++|++|+|||++|+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999888887753 123379999999999999999999986
No 230
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.63 E-value=0.046 Score=53.96 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=87.2
Q ss_pred CccccchhhHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLM---E---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++... . . ..+.+.. .
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~--~---~~i~~~~------~ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASG------S 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-T--C---CEEEEEH------H
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-C--C---CEEEecH------H
Confidence 468898877666654432 1 112238999999999999999999986 2 1 2233321 1
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh----------------chhhccCCCCCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV----------------DLAQVGLPVSSCAS 284 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~ 284 (724)
++. ... .. ........+.+.. .....++++|++.... ....+...+..+..
T Consensus 108 ~~~----~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DFV----EMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HHH----HST-------TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HHH----HHH-------hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 111 100 00 0111122223322 2456899999985310 01111111111111
Q ss_pred C-CcEEEEecCChHHHh-----hccCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 285 S-SNKIVFTTREIEVCG-----QMEAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 285 g-~s~iliTtr~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
. ...++.+|...++.. ...-...+.+...+.++-.+++..++.......... ...++..+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 1 023444555544321 112344677888888888888887664332122222 335667777765
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.53 E-value=0.015 Score=56.71 Aligned_cols=171 Identities=13% Similarity=0.163 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 154 ATVVGLQSTFDGVWKCLM---E---------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
++++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++... . . ..+.+.. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~--~---~~i~~~~------~ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASG------S 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-T--C---CEEEEEH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--C---CEEEeeH------H
Confidence 467888876666554332 1 112238999999999999999999886 2 1 1222221 1
Q ss_pred HHHHHHHHHcCCCccccCCcCHHHHHHHHHHHH-ccCceEEEeccccChh------------c----hhhccCCCCCCCC
Q 048789 222 KIQEGIAKKMGLFNESWQSKGLEEKANKIFKIL-SKKKFVLLLDDIWELV------------D----LAQVGLPVSSCAS 284 (724)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~~~ 284 (724)
++ .... .. ........+.+.. .....++++|++.... . ...+...+..+..
T Consensus 84 ~~----~~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DF----VEMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HH----HHSC-------TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HH----HHHH-------hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 1110 00 0111222233333 2356899999984321 0 1122111111111
Q ss_pred -CCcEEEEecCChHHHhh-c----cCccceeeccCChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCC
Q 048789 285 -SSNKIVFTTREIEVCGQ-M----EAHRSFKVECLGFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLP 352 (724)
Q Consensus 285 -g~s~iliTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 352 (724)
....++.||....+... . .-...+.+...+.++-.+++...+.........+ ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 10234446665544221 1 1234677888888888888877664322122222 235666777754
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.49 E-value=0.016 Score=63.28 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=35.2
Q ss_pred ccccchhhHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLME------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+++|.+...+.+.+.+.- ....++.++|++|+||||+|+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 468887777776554321 245689999999999999999999987
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.48 E-value=0.019 Score=65.86 Aligned_cols=152 Identities=11% Similarity=0.088 Sum_probs=84.1
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.+++|.+..++++.+++.. .....|.|+|++|+||||||+.+++.. ...| +.++.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~----- 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP----- 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEch-----
Confidence 3578999988888887642 234579999999999999999999876 2222 333321
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccChh----------------chhhccCCCCCCCC
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWELV----------------DLAQVGLPVSSCAS 284 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~ 284 (724)
+ + .... ...........+.........++++|++.... .+..+...... ..
T Consensus 273 -~----l----~~~~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~ 339 (806)
T 1ypw_A 273 -E----I----MSKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp -H----H----SSSS---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TS
T ss_pred -H----h----hhhh---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cc
Confidence 1 1 0000 11112222333334445578899999985321 01111111111 12
Q ss_pred CCcEEEEecCChHHHh-hc----cCccceeeccCChHHHHHHHHHHhCCCC
Q 048789 285 SSNKIVFTTREIEVCG-QM----EAHRSFKVECLGFDDAWKLFEEKVGRDT 330 (724)
Q Consensus 285 g~s~iliTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 330 (724)
+ ..++.||....... .+ .-...+.+...+.++-.+++...+....
T Consensus 340 ~-v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~ 389 (806)
T 1ypw_A 340 H-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 389 (806)
T ss_dssp C-CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC
T ss_pred c-EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCC
Confidence 2 45666665543211 11 1123466777888888888887765433
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.48 E-value=0.0017 Score=64.44 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEe--CCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVV--SKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
.+++.|+|++|+|||+||.++.... .. .+.|++. .... .. ...+.+...+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~v-------------~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEPL-------------SG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCSS-------------TT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhhh-------------hh-----hhcCHHHHHHHHHH
Confidence 3578899999999999999998752 11 2334554 2221 10 11355666667777
Q ss_pred HHccCceEEEeccccC
Q 048789 253 ILSKKKFVLLLDDIWE 268 (724)
Q Consensus 253 ~l~~k~~LlVlDdv~~ 268 (724)
.+...+ ++|+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 777666 999999854
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.41 E-value=0.0099 Score=60.56 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-.++.|+|.+|+||||||..++.... ..-..++|++....++.. .+++++..... ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 346999999999999999999988762 112357788877766654 44555544321 1234566666666
Q ss_pred HHHHc-cCceEEEeccccC
Q 048789 251 FKILS-KKKFVLLLDDIWE 268 (724)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~~ 268 (724)
...++ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 65554 4556888898743
No 236
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.39 E-value=0.0078 Score=57.15 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcc---------c-cCCcCH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNE---------S-WQSKGL 243 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~-~~~~~~ 243 (724)
.-.++.|+|.+|+||||++..++. . . -..++|++....++..++.+ +....+.... . ......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346999999999999999999987 2 1 14678888776556655543 3333332100 0 011112
Q ss_pred HHHHHHHHHHHccCceEEEeccccC
Q 048789 244 EEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
.+....++..+..+.-++|+|.+..
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 2344444444433467889998743
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.014 Score=56.42 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCC----CCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcc----c---cCCcC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPN----SFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNE----S---WQSKG 242 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 242 (724)
.-.++.|+|.+|+|||||+..+..... ... .-..++|++....+...++. .+++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 346999999999999999999988641 111 23578898877655555443 34455544321 0 01122
Q ss_pred HHH---HHHHHHHHHc-cCceEEEeccccC
Q 048789 243 LEE---KANKIFKILS-KKKFVLLLDDIWE 268 (724)
Q Consensus 243 ~~~---~~~~l~~~l~-~k~~LlVlDdv~~ 268 (724)
..+ ....+.+.+. .+.-++|+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 222 2333444443 3667889998743
No 238
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.25 E-value=0.011 Score=61.54 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=12.1
Q ss_pred CCCCcceEEEeecccccccChhhhhcC
Q 048789 389 PVCPRLRTLFLSSNIFHRVNSDFFQSM 415 (724)
Q Consensus 389 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l 415 (724)
..|.+|+.+.+..+ +..+....|.++
T Consensus 66 ~~C~~L~~I~lp~~-v~~Ig~~aF~~c 91 (379)
T 4h09_A 66 NSCYNMTKVTVAST-VTSIGDGAFADT 91 (379)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred hCCCCCCEEEeCCc-ceEechhhhcCC
Confidence 34455555555433 444444444444
No 239
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.13 E-value=0.0048 Score=65.98 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHh---hcC--CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCL---MEE--QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998877655443 333 33578999999999999999999987
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.13 E-value=0.022 Score=57.69 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCC---CCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc-------cCCcCH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTP---NSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES-------WQSKGL 243 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (724)
.-.++.|+|.+|+||||+|..++....... ..-..++|++....++..++.+ +++.++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 346999999999999999999987752110 0135789999888777777653 45566543210 011222
Q ss_pred H---HHHHHHHHHHc--cCceEEEecccc
Q 048789 244 E---EKANKIFKILS--KKKFVLLLDDIW 267 (724)
Q Consensus 244 ~---~~~~~l~~~l~--~k~~LlVlDdv~ 267 (724)
+ +....+...++ .+.-++|+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23445555554 355688888874
No 241
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.12 E-value=0.029 Score=57.25 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCC---CCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcc----------ccCC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTP---NSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNE----------SWQS 240 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 240 (724)
.-.++.|+|.+|+||||+|..++....... ..-..++|++....++..++.. ++..++.... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 456999999999999999999888741100 0235789999888777776654 4455554321 0011
Q ss_pred cCHHHHHHHHHHHHc---cCceEEEecccc
Q 048789 241 KGLEEKANKIFKILS---KKKFVLLLDDIW 267 (724)
Q Consensus 241 ~~~~~~~~~l~~~l~---~k~~LlVlDdv~ 267 (724)
....++...+...+. .+.-++|+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 112233334444443 345578888873
No 242
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.11 E-value=0.0063 Score=60.77 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+.+.++|++|+|||++|+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999999987
No 243
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.04 E-value=0.021 Score=56.50 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc---CCcCHHHH-HHHHH
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW---QSKGLEEK-ANKIF 251 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 251 (724)
.++-|.|.+|+||||||.+++....+ ...-..++||+....++.. .+++++...++. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 47899999999999999988877621 1113578999988887764 266777654321 23345555 33332
Q ss_pred HH--H-ccCceEEEeccccC
Q 048789 252 KI--L-SKKKFVLLLDDIWE 268 (724)
Q Consensus 252 ~~--l-~~k~~LlVlDdv~~ 268 (724)
.. + .++.-++|+|-|..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 34677899998843
No 244
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.03 E-value=0.018 Score=58.83 Aligned_cols=86 Identities=22% Similarity=0.173 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc---CCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW---QSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (724)
.-.++.|.|.+|+||||||..++..... .-..++|++....++... +..++...+.. ...+.++..+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4469999999999999999998877621 123688999877776442 45555432211 123445555555
Q ss_pred HHHHc-cCceEEEecccc
Q 048789 251 FKILS-KKKFVLLLDDIW 267 (724)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (724)
....+ .+.-++|+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 54443 445588999873
No 245
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.97 E-value=0.022 Score=58.42 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-.++.|.|.+|+||||||..+...... .-..++|++....++.. .+..++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3458999999999999999998877621 12468899988776654 24455543221 1234556666666
Q ss_pred HHHHcc-CceEEEecccc
Q 048789 251 FKILSK-KKFVLLLDDIW 267 (724)
Q Consensus 251 ~~~l~~-k~~LlVlDdv~ 267 (724)
....+. +.-++|+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 665543 45689999983
No 246
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.87 E-value=0.025 Score=57.70 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-.++.|+|.+|+||||||.++..... ..-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456999999999999999999887652 112467889887766653 24555543221 1233455555555
Q ss_pred HHHHc-cCceEEEecccc
Q 048789 251 FKILS-KKKFVLLLDDIW 267 (724)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (724)
..... .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 54443 346689999984
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.83 E-value=0.0069 Score=61.04 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME--------------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999988877753 235678899999999999999999987
No 248
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.75 E-value=0.01 Score=55.55 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=33.2
Q ss_pred chhhHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 159 LQSTFDGVWKCLME---EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 159 r~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|++.++.+.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45567777777764 356799999999999999999998865
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.70 E-value=0.0039 Score=59.05 Aligned_cols=113 Identities=13% Similarity=0.010 Sum_probs=60.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFKI 253 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (724)
.-.++.|+|..|+||||++..+..+.. . ... .++.+...... . -...+++.++............+..+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~-~-~g~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE-Y-ADV-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH-H-TTC-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH-h-cCC-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 346899999999999999998888772 1 222 23334322221 1 1123444444332211222334445555544
Q ss_pred HccCce-EEEeccccCh--hchhhccCCCCCCCCCCcEEEEecCCh
Q 048789 254 LSKKKF-VLLLDDIWEL--VDLAQVGLPVSSCASSSNKIVFTTREI 296 (724)
Q Consensus 254 l~~k~~-LlVlDdv~~~--~~~~~l~~~~~~~~~g~s~iliTtr~~ 296 (724)
+.+.++ ++|+|++... ..++.+.. +.+ .| -.|++|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~g-i~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NG-FVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TT-CEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CC-CeEEEEeccc
Confidence 444444 9999998642 22233322 111 24 6788888743
No 250
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.64 E-value=0.0092 Score=58.64 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=34.7
Q ss_pred ccccchhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|....+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 578999888888776643 233567899999999999999999876
No 251
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.58 E-value=0.06 Score=56.32 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.++|.+|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.57 E-value=0.022 Score=65.24 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME---------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+.+.+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578998888888776642 123479999999999999999999887
No 253
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.46 E-value=0.038 Score=55.92 Aligned_cols=93 Identities=15% Similarity=0.254 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccC-----------CCCCC--cEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLD-----------TPNSF--DFVIWIVVSKDLQLAKIQEGIAKKMGLFNES--- 237 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~-----------~~~~f--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~--- 237 (724)
.-.++.|+|.+|+|||++|..++..... ..+.. ..++|++....++..++.+ +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 4569999999999999999998876310 01111 5789999888877777664 44555543210
Q ss_pred ----cCCcCHH---HHHHHHHHHHcc--CceEEEecccc
Q 048789 238 ----WQSKGLE---EKANKIFKILSK--KKFVLLLDDIW 267 (724)
Q Consensus 238 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv~ 267 (724)
....+.+ +....+...+.. +.-++|+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0112222 233444454443 34577888773
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.45 E-value=0.037 Score=64.19 Aligned_cols=45 Identities=27% Similarity=0.402 Sum_probs=37.0
Q ss_pred ccccchhhHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLMEE---------QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.+..+..+...+... ....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689998888887776431 23589999999999999999999887
No 255
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.44 E-value=0.014 Score=58.58 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=37.8
Q ss_pred ccccchhhHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 578999999988887754 344567899999999999999999976
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.34 E-value=0.054 Score=51.66 Aligned_cols=87 Identities=22% Similarity=0.170 Sum_probs=50.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc----------------
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW---------------- 238 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---------------- 238 (724)
-.+++|+|.+|+|||||++.++..... .-..++|+.... ....+...+. .++......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 468999999999999999999866521 112456665433 3444444332 343221100
Q ss_pred -----CCcCHHHHHHHHHHHHcc-Cce--EEEecccc
Q 048789 239 -----QSKGLEEKANKIFKILSK-KKF--VLLLDDIW 267 (724)
Q Consensus 239 -----~~~~~~~~~~~l~~~l~~-k~~--LlVlDdv~ 267 (724)
...+..+....+...+.. +.- ++|+|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 111455555555554432 444 99999975
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.27 E-value=0.015 Score=54.75 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=29.7
Q ss_pred hHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 162 TFDGVWKCLME--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-.++|.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555543 456799999999999999999998877
No 258
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.22 E-value=0.01 Score=60.22 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=35.2
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC
Q 048789 165 GVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL 218 (724)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~ 218 (724)
++++.+.. ..-..++|+|..|+|||||++.+.+........+.+ +++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 34455544 345689999999999999999988765211233443 456677553
No 259
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.18 E-value=0.029 Score=60.07 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..++.+...+..+ .-|.++|++|+|||++|+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 35799999998888777654 378899999999999999999877
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.17 E-value=0.059 Score=53.55 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC-cCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK-DLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIFK 252 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (724)
...+|+++|.+|+||||++..++..+....+ ..+..+.... .....+.+....+..+.+.. ...+..++...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 3569999999999999999999887721112 2344444332 22333334444433333221 1123333333333
Q ss_pred HHccCceEEEecc
Q 048789 253 ILSKKKFVLLLDD 265 (724)
Q Consensus 253 ~l~~k~~LlVlDd 265 (724)
.+ .+.=++++|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 23 3445778884
No 261
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.09 E-value=0.058 Score=60.98 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=56.2
Q ss_pred CccccchhhHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH
Q 048789 154 ATVVGLQSTFDGVWKCLME-------------EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL 220 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 220 (724)
.++.|.++.++++.+.+.- ...+-|.++|++|.|||.+|+.+++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 4567888888877765431 134568899999999999999999987 221 22222 1
Q ss_pred HHHHHHHHHHcCCCccccCCcCHHHHHHHHHHHHccCceEEEeccccC
Q 048789 221 AKIQEGIAKKMGLFNESWQSKGLEEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
.+ ++... ...+...+...+...-+..+++|++|+++.
T Consensus 545 ~~----l~s~~-------vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PE----LLTMW-------FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HHTTT-------CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ch----hhccc-------cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 22 22111 222333333333333345789999999864
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.00 E-value=0.062 Score=54.89 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCC----CcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc----------cC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNS----FDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES----------WQ 239 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----------~~ 239 (724)
.-.++.|+|..|+|||||+..++... ..... -..++|++....+...++ ..+++..+..... ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 45799999999999999999998875 11111 125588887665544443 3455544432110 00
Q ss_pred CcCHHHHHHHHHHHHc------cCceEEEeccccC
Q 048789 240 SKGLEEKANKIFKILS------KKKFVLLLDDIWE 268 (724)
Q Consensus 240 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 268 (724)
.....++...+...+. .+.-++|+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1112333444454454 3567888998754
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.98 E-value=0.014 Score=52.89 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.97 E-value=0.014 Score=53.22 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999986
No 265
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.95 E-value=0.12 Score=53.51 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCC---CCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc-------cCCcCH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDT---PNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES-------WQSKGL 243 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (724)
.-.++.|+|.+|+|||||+..++-..... ...-..++|++....+...++. .+++.++..... ......
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 34699999999999999999775433110 1133568899877766665543 366666543210 011122
Q ss_pred H---HHHHHHHHHHc-cCceEEEecccc
Q 048789 244 E---EKANKIFKILS-KKKFVLLLDDIW 267 (724)
Q Consensus 244 ~---~~~~~l~~~l~-~k~~LlVlDdv~ 267 (724)
. +....+...+. .+.-++|+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 22233333332 356688888863
No 266
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.93 E-value=0.012 Score=53.85 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC---cCCHHHHHHHHHHH---cCCCccccCC-------c
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK---DLQLAKIQEGIAKK---MGLFNESWQS-------K 241 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~~~---l~~~~~~~~~-------~ 241 (724)
...|-|++..|.||||.|-.+.-+.. ...+ .+.++..-+ ......++..+.-. .+. .-.... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~-gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT-GFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCT-TCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEccc-ccccCCCCcHHHHH
Confidence 35677777777999999988877762 2222 344443322 22333444333100 000 000001 1
Q ss_pred CHHHHHHHHHHHHccCce-EEEeccccCh-----hchhhccCCCCCCCCCCcEEEEecCCh
Q 048789 242 GLEEKANKIFKILSKKKF-VLLLDDIWEL-----VDLAQVGLPVSSCASSSNKIVFTTREI 296 (724)
Q Consensus 242 ~~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~~~~~~~g~s~iliTtr~~ 296 (724)
........+++.+.+.+| |||||++-.. ...+.+...+...... ..||+|+|..
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~-~~vIlTGr~a 163 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGH-QTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTT-CEEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCC-CEEEEECCCC
Confidence 112233445555555444 9999998432 1222222222222233 7899999985
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.91 E-value=0.014 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 544
No 268
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.79 E-value=0.23 Score=51.93 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=46.4
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHH
Q 048789 165 GVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKK 230 (724)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~ 230 (724)
++++.|.. .+-..++|+|..|+|||+|+.++.+... +.+-+.++++-+++.. ...++.+++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 34555554 3456899999999999999999998752 3445677888888764 456677777654
No 269
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.78 E-value=0.018 Score=53.74 Aligned_cols=26 Identities=38% Similarity=0.367 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 270
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.74 E-value=0.019 Score=58.42 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|++..++.+...+..+ .-+.++|.+|+|||++|+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35799999998888877654 368899999999999999999876
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.72 E-value=0.097 Score=52.18 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCH--HHHHHHHHHHcCCCcccc-CCcCHHHH-HHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQL--AKIQEGIAKKMGLFNESW-QSKGLEEK-ANK 249 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~-~~~ 249 (724)
...+|+|+|.+|+||||++..++..+.. . -..+.++... .+.. .+-+...++..+...-.. ...+.... .+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD-E--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH-T--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh-c--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 4579999999999999999999987721 1 1234444433 2222 222334444444321110 11222222 234
Q ss_pred HHHHHccCceEEEecccc
Q 048789 250 IFKILSKKKFVLLLDDIW 267 (724)
Q Consensus 250 l~~~l~~k~~LlVlDdv~ 267 (724)
+...+..+.-++++|..-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555588888653
No 272
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.71 E-value=0.26 Score=50.22 Aligned_cols=163 Identities=10% Similarity=-0.053 Sum_probs=93.4
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHH
Q 048789 166 VWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEE 245 (724)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (724)
+.+.+...-.++..++|..|.||++.++.+..... ...|+....+.+....++.++.
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~--------------------- 65 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIF--------------------- 65 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHH---------------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHH---------------------
Confidence 33444434567999999999999999999888652 1234322222233333333333
Q ss_pred HHHHHHH-HHccCceEEEeccccC---hhchhhccCCCCCCCCCCcEEEEecCC-------hHHHhhc-cCccceeeccC
Q 048789 246 KANKIFK-ILSKKKFVLLLDDIWE---LVDLAQVGLPVSSCASSSNKIVFTTRE-------IEVCGQM-EAHRSFKVECL 313 (724)
Q Consensus 246 ~~~~l~~-~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~g~s~iliTtr~-------~~v~~~~-~~~~~~~l~~L 313 (724)
+.+.. -+-+++-++|+|++.. ...++.+...+..-..+ +.+|+++.. ..+...+ .....++..++
T Consensus 66 --~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~-~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 66 --SLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDD-LLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp --HHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTT-EEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred --HHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCC-eEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 22221 2345667888998854 23344443333222234 666665532 2333332 23457888999
Q ss_pred ChHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhCCCCchHHH
Q 048789 314 GFDDAWKLFEEKVGRDTLDTHPDIPELAEAVARECGGLPLALIT 357 (724)
Q Consensus 314 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 357 (724)
+.++-...+.+.+.......+ .+....+++.++|.+..+..
T Consensus 143 ~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CTTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 999888877776643321111 34577788888888776654
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.64 E-value=0.02 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998875
No 274
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.61 E-value=0.029 Score=57.96 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHhh-------------c--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLM-------------E--EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36899998888887772 1 134578999999999999999999986
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.60 E-value=0.19 Score=50.50 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.-.++.|.|.+|+||||+|..++.... ..+ ..++|++.. -+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 446999999999999999999987762 222 577887765 4566666666654
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.59 E-value=0.018 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|+.|+||||+++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998753
No 277
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.59 E-value=0.19 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+++|+|+.|+||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.58 E-value=0.017 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 279
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.57 E-value=0.035 Score=52.78 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=29.9
Q ss_pred hHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 162 TFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+.+.+.+......+|.|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444445555678899999999999999999998875
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.57 E-value=0.022 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 048789 176 GIVGLYGMGGVGKTTLLTQINN 197 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~ 197 (724)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.57 E-value=0.037 Score=55.81 Aligned_cols=43 Identities=26% Similarity=0.256 Sum_probs=32.0
Q ss_pred ccchhhHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 157 VGLQSTFDGVWKCLM----EEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 157 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
|+.+.-.+.+++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344455555655553 3556779999999999999999988875
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.54 E-value=0.021 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.53 E-value=0.026 Score=52.62 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=24.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 172 EEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 172 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.....+|.|+|+.|+||||+++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999876
No 284
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.48 E-value=0.22 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.++|.+|+||||++..++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998887
No 285
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.48 E-value=0.77 Score=48.52 Aligned_cols=53 Identities=11% Similarity=-0.052 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.-.++.|.|.+|+||||+|..++..... ..-..++|++.. -+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3458999999999999999998887631 112357777654 3466777666543
No 286
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.46 E-value=0.17 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.++|.+|+||||++..++..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.44 E-value=0.038 Score=54.73 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=34.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
....+|+|+|..|+||||||+.+...+............|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 35679999999999999999998887621000123444445544333334444443
No 288
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.38 E-value=0.037 Score=57.41 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHhh------------------------------cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLM------------------------------EEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.+..++.+...+. ......+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 47898888888776662 0124568999999999999999999886
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.36 E-value=0.024 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 290
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.36 E-value=0.35 Score=48.73 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.-.++.|.|.+|+||||+|..++..... .-..++|++.. -+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 3458999999999999999999887632 22456776653 4566776666554
No 291
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.35 E-value=0.026 Score=52.69 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 355799999999999999999998875
No 292
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.34 E-value=0.12 Score=53.90 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=46.3
Q ss_pred cccChhhhhcCCCceEEEccCCC-CC-chhhhccccCCeeecCCCCccccchH-HhccccCcEeecCCcccccccChhhh
Q 048789 405 HRVNSDFFQSMASLRVLKLSYSN-PL-LFEISKVVSLQHLDLSHSRIERLPIE-FKYLVNLKCLNLEYTYGVLKIPPKVI 481 (724)
Q Consensus 405 ~~~~~~~~~~l~~Lr~L~l~~~~-~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~~~~lp~~~i 481 (724)
..+....|..+..|+.+.+.... .+ ...+.++..|+.+.+. +.++.++.. +..+.+|+.++|..+ +..+....+
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF 330 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAF 330 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT
T ss_pred eEcccceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHh
Confidence 33444456666666666665443 22 2234555666666654 234444432 455566666666543 455555556
Q ss_pred cCCCcCcEEecc
Q 048789 482 SNLKILQTLRMY 493 (724)
Q Consensus 482 ~~l~~L~~L~l~ 493 (724)
..+.+|+.+.+.
T Consensus 331 ~~C~~L~~i~ip 342 (394)
T 4gt6_A 331 AGCEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEEEC
T ss_pred hCCCCCCEEEEC
Confidence 666666666654
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.32 E-value=0.02 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 294
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.31 E-value=0.035 Score=52.60 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=32.5
Q ss_pred cchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 158 GLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.++..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334445555555555678899999999999999999998876
No 295
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.30 E-value=0.021 Score=58.67 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=34.5
Q ss_pred CccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..+..+...+......-|.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3589988766554444433333459999999999999999999976
No 296
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.28 E-value=0.1 Score=54.71 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=38.0
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHH
Q 048789 167 WKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIA 228 (724)
Q Consensus 167 ~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~ 228 (724)
++.|.. .+-..++|+|..|+|||||+..+..... ...-+.++++.+++.. ...++..++.
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhh
Confidence 444443 2234689999999999999999887752 1222455667776654 3445555454
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.24 E-value=0.03 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999887
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.21 E-value=0.17 Score=52.78 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHH--HHHHHHHHcCCCcccc-CCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAK--IQEGIAKKMGLFNESW-QSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~--~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 250 (724)
...+|.++|.+|+||||++..++..+. .. . ..+..+.. +...+.. .+.......+.+.-.. ...+..++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~-g-~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GK-G-RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TT-T-CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc-C-CeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHH
Confidence 346899999999999999999998873 22 2 23344443 2333322 2334444444332110 112334443333
Q ss_pred HHHHccCce-EEEeccc
Q 048789 251 FKILSKKKF-VLLLDDI 266 (724)
Q Consensus 251 ~~~l~~k~~-LlVlDdv 266 (724)
.+.++.+.| ++|+|-.
T Consensus 173 l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 173 EEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHHCCCCEEEEcCC
Confidence 344432333 6777753
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.21 E-value=0.03 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.20 E-value=0.027 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.17 E-value=0.031 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.16 E-value=0.025 Score=51.67 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.09 E-value=0.029 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 304
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.07 E-value=0.029 Score=52.46 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998875
No 305
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.04 E-value=0.031 Score=56.09 Aligned_cols=27 Identities=30% Similarity=0.673 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++.+||+|.|-|||||||.+-.+.-.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 567999999999999999998888777
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.02 E-value=0.028 Score=52.62 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999876
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.02 E-value=0.031 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.01 E-value=0.026 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999886
No 309
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.00 E-value=0.034 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|+.|+||||+++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999876
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.00 E-value=0.031 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|+.|+||||+|+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.97 E-value=0.034 Score=51.40 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.96 E-value=0.034 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999864
No 313
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.95 E-value=0.028 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999775
No 314
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.95 E-value=0.033 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 315
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.94 E-value=0.039 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999876
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.91 E-value=0.034 Score=51.48 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 317
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.87 E-value=0.038 Score=51.95 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...++|.|.|++|+||||.|+.+...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999987
No 318
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.84 E-value=0.038 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998876
No 319
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.83 E-value=0.034 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|+|+|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 320
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.82 E-value=0.23 Score=52.27 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHH
Q 048789 166 VWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKK 230 (724)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~ 230 (724)
+++.|.. .+-..++|+|..|+|||+|+.++.+... +.+-+.++++-+++.. ...++.+++...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3455544 3445799999999999999999998752 3445788888888765 466777777653
No 321
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.82 E-value=0.039 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
...|.|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999887
No 322
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.81 E-value=0.17 Score=48.54 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEG 226 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 226 (724)
.-.++.|.|.+|+||||+|..++..... .-..++|++.... ..++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSC--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCC--HHHHHHH
Confidence 3458999999999999999887765521 1235677775443 4444433
No 323
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.79 E-value=0.059 Score=46.13 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=42.2
Q ss_pred CeeecCCCCcc--ccchHHhccccCcEeecCCcccccccChhhhcCCCcCcEEeccccCCC
Q 048789 440 QHLDLSHSRIE--RLPIEFKYLVNLKCLNLEYTYGVLKIPPKVISNLKILQTLRMYECATV 498 (724)
Q Consensus 440 ~~L~L~~~~i~--~Lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 498 (724)
..++.+++.++ .+|..+. .+|++|+|++| .+..+|.+.+..+++|++|++.+|+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 36677777777 7775432 46888888888 478888887888888999988887654
No 324
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.78 E-value=0.041 Score=53.45 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|+|.|+.|+||||+|+.+...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998865
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.75 E-value=0.036 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998865
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.75 E-value=0.028 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 327
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.72 E-value=0.04 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..|.+.|+.|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.72 E-value=0.028 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998876
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.72 E-value=0.061 Score=53.90 Aligned_cols=79 Identities=20% Similarity=0.104 Sum_probs=43.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHH--HHHHcCCCccccCCcCHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEG--IAKKMGLFNESWQSKGLEEKANKIF 251 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (724)
...+|+|.|..|+||||+++.+.... .....-..+..+......-....... +....+. ...-+.+.+.+.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll-~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~----P~~~D~~~l~~~L~ 165 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL-SRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGF----PESYDMPSLLRVLN 165 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-TTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTS----GGGBCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh-cccCCCCeEEEEeecccccchhhhhhHHHHhhccC----cccccHHHHHHHHH
Confidence 45699999999999999999998876 21111123444554433221111111 0011111 23456666666666
Q ss_pred HHHccC
Q 048789 252 KILSKK 257 (724)
Q Consensus 252 ~~l~~k 257 (724)
....++
T Consensus 166 ~L~~g~ 171 (321)
T 3tqc_A 166 AIKSGQ 171 (321)
T ss_dssp HHHTTC
T ss_pred hhhccc
Confidence 665665
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.72 E-value=0.036 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 048789 176 GIVGLYGMGGVGKTTLLTQINN 197 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~ 197 (724)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.67 E-value=0.038 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999886
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.66 E-value=0.045 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999874
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.66 E-value=0.04 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|+.|+||||+++.+...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999999776
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.64 E-value=0.043 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998764
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.64 E-value=0.044 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.63 E-value=0.044 Score=49.16 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++++|+|..|+||||++..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35799999999999999999999876
No 337
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.63 E-value=0.14 Score=63.19 Aligned_cols=86 Identities=22% Similarity=0.165 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
..++|.|+|++|+|||+||.++..... ..=..++|+++...++... ++.++.+.+. ....+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 567999999999999999999988762 2234678888877776665 4455532211 1233445566666
Q ss_pred HHHHc-cCceEEEecccc
Q 048789 251 FKILS-KKKFVLLLDDIW 267 (724)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (724)
++..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 65553 467799999984
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.61 E-value=0.034 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 339
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.61 E-value=0.26 Score=49.02 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.-.+++|+|.+|+|||||++.++.......+ ..++|+.... ...++...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G--~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC--CCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC--CeEEEEeCcC--CHHHHHHHHHHH
Confidence 4469999999999999999999887621111 1455665432 344555554443
No 340
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.59 E-value=0.051 Score=56.89 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLME--------------EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.+..+..+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578988888887665522 134579999999999999999999987
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.58 E-value=0.034 Score=51.78 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998865
No 342
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.55 E-value=0.067 Score=52.97 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 343
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.50 E-value=0.042 Score=51.44 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 048789 176 GIVGLYGMGGVGKTTLLTQINN 197 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~ 197 (724)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 344
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.50 E-value=0.04 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQIN 196 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~ 196 (724)
.-.+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.50 E-value=0.049 Score=50.25 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999876
No 346
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.48 E-value=0.045 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.45 E-value=0.049 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.44 E-value=0.046 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.41 E-value=0.032 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=18.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998876
No 350
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.40 E-value=0.48 Score=50.60 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|+|+|.+|+||||++..+...+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.39 E-value=0.046 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.39 E-value=0.045 Score=50.97 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 353
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.37 E-value=0.052 Score=50.09 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998874
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.36 E-value=0.083 Score=50.91 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|.|.|++|+||||+|+.+...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 355
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.36 E-value=0.15 Score=48.37 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCC--C-CCCcEEEEEEeCCcCCHHHHHHHHHHHcC
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDT--P-NSFDFVIWIVVSKDLQLAKIQEGIAKKMG 232 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (724)
.-.+++|+|+.|+|||||++.++...... . ..-...+|+.-........ ...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 34699999999999999999998754110 1 1234678887655444433 334444443
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.36 E-value=0.23 Score=49.20 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc-CCHHHHHHHHHHHcCCCcccc-CCcCHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD-LQLAKIQEGIAKKMGLFNESW-QSKGLEEKANKIFK 252 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (724)
..+|+++|.+|+||||++..++..... .-..+.++..... ......+.......+.+.-.. ...+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 579999999999999999999887721 1223455554322 223333344444444321110 12344444444444
Q ss_pred HHc-cCceEEEeccc
Q 048789 253 ILS-KKKFVLLLDDI 266 (724)
Q Consensus 253 ~l~-~k~~LlVlDdv 266 (724)
.++ ..-=++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 444 33337777764
No 357
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.31 E-value=0.054 Score=54.30 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK 216 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 216 (724)
....+|+|+|..|+|||||++.+..-.....+. ..+.+|....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-PRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-CCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-CeEEEEecCc
Confidence 345799999999999999999998876221111 2355565443
No 358
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.28 E-value=0.048 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998876
No 359
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.26 E-value=0.14 Score=53.10 Aligned_cols=101 Identities=14% Similarity=0.259 Sum_probs=50.8
Q ss_pred CCCcceEEEeecccccccChhhhhcCCCceEEEccCCC-CCc-hhhhccccCCeeecCCCCccccch-HHhccccCcEee
Q 048789 390 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKLSYSN-PLL-FEISKVVSLQHLDLSHSRIERLPI-EFKYLVNLKCLN 466 (724)
Q Consensus 390 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~ 466 (724)
.+..|..+.+..+ +..+....|..+..|+.+.+..+- .+. ..+.++.+|+.+.+..+ ++.++. .+..+.+|+.++
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 3445555555433 334444455556666666554433 221 23444555555555432 333433 244555666666
Q ss_pred cCCcccccccChhhhcCCCcCcEEecc
Q 048789 467 LEYTYGVLKIPPKVISNLKILQTLRMY 493 (724)
Q Consensus 467 l~~~~~~~~lp~~~i~~l~~L~~L~l~ 493 (724)
+.++ .+..++...+..+.+|+.+.+.
T Consensus 293 l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 293 MDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred cccc-ccceehhhhhcCCCCCCEEEcC
Confidence 6544 2455555556666666666553
No 360
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.23 E-value=0.057 Score=47.99 Aligned_cols=27 Identities=37% Similarity=0.331 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..-.+++|+|+.|.|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345699999999999999999999876
No 361
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.21 E-value=0.067 Score=51.93 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999876
No 362
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.19 E-value=0.051 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999765
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.15 E-value=0.055 Score=50.83 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.14 E-value=0.053 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 365
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.10 E-value=0.056 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|.|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 366
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.10 E-value=0.063 Score=51.85 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|+|.|..|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345699999999999999999998865
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.07 E-value=0.058 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...|.|.|+.|+||||+|+.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999886
No 368
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.06 E-value=0.084 Score=48.61 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=27.4
Q ss_pred HHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 163 FDGVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+..+..++.. .....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444443 123479999999999999999999887
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.03 E-value=0.046 Score=51.75 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34589999999999999999998865
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.99 E-value=0.031 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|+|.|..|+||||+|+.+...+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.98 E-value=0.057 Score=50.95 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.96 E-value=0.058 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.92 E-value=0.06 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 374
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.92 E-value=0.15 Score=51.79 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=35.3
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCc
Q 048789 165 GVWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKD 217 (724)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 217 (724)
++++.+.. ..-..++|+|.+|+|||+|+.++.+........+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 56666665 445689999999999999999998875211123333 45666554
No 375
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.89 E-value=0.34 Score=48.03 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCcccc-CCcCHHHHHH-HH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNESW-QSKGLEEKAN-KI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~-~l 250 (724)
...+++|+|.+|+||||++..++..... .-..+.++...... .....+....+..+...-.. ...+..++.. .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 3468999999999999999999888721 11234444433221 11112333444444332110 1223334433 33
Q ss_pred HHHHccCceEEEeccc
Q 048789 251 FKILSKKKFVLLLDDI 266 (724)
Q Consensus 251 ~~~l~~k~~LlVlDdv 266 (724)
......+.=++|+|--
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333345557888875
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.86 E-value=0.061 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998875
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.82 E-value=0.056 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...|.|.|+.|+||||+|+.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999887
No 378
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.66 E-value=0.067 Score=50.53 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999998876
No 379
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.66 E-value=0.043 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++++|+|..|+|||||++.+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998877
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.63 E-value=0.072 Score=50.04 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445799999999999999999998876
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.56 E-value=0.076 Score=48.32 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.56 E-value=0.073 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45699999999999999999999877
No 383
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.48 E-value=0.11 Score=52.05 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=28.9
Q ss_pred hHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 162 TFDGVWKCLMEE---QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 162 ~~~~l~~~L~~~---~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+.+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344445555532 25688999999999999999999987
No 384
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.45 E-value=0.065 Score=49.29 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 385
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.36 E-value=0.08 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|.|.|++|+||+|.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.33 E-value=0.093 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINN 197 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~ 197 (724)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 387
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.32 E-value=0.065 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-.+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.29 E-value=0.09 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998876
No 389
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.28 E-value=0.081 Score=50.28 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..+|+|.|++|+||||+|+.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 390
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.28 E-value=0.081 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 391
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.26 E-value=0.25 Score=45.65 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHH
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 229 (724)
.|+|-|.-|+||||.++.+++... . ...+ ++...-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~-~-~g~~-v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE-K-RGKK-VILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-H-TTCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-H-CCCc-EEEEECCCCCcHHHHHHHHhh
Confidence 478899999999999999999882 1 2222 333433333334444455443
No 392
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.24 E-value=0.081 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.. .+++|+|+.|+|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998765
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.23 E-value=0.086 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINN 197 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~ 197 (724)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.23 E-value=0.087 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 395
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.10 E-value=0.11 Score=57.57 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 155 TVVGLQSTFDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.+..++.+...+..+ ..+.|+|++|+||||+|+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 4789988888877777655 489999999999999999999976
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.07 E-value=0.085 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..|.|.|++|+||||+|+.+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999887
No 397
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.06 E-value=0.096 Score=52.49 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|+|+|..|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999998876
No 398
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.01 E-value=0.089 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 399
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.98 E-value=0.083 Score=51.02 Aligned_cols=24 Identities=38% Similarity=0.306 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINN 197 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~ 197 (724)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999999883
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.98 E-value=0.089 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.|.|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 401
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.96 E-value=0.15 Score=53.85 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+++|+|..|+||||+++.+...+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45699999999999999999998876
No 402
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.94 E-value=0.1 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...|.|.|+.|+||||+|+.+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 403
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.94 E-value=0.1 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+++|+|..|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 404
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.84 E-value=0.06 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-Hhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQIN-NKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~-~~~ 199 (724)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999998 654
No 405
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.84 E-value=0.087 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44699999999999999999988755
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.83 E-value=0.18 Score=51.60 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=28.7
Q ss_pred HHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 163 FDGVWKCLM--EEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 163 ~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++.+.+. .....+|+|+|.+|+||||++..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444 3567899999999999999999988776
No 407
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.76 E-value=0.078 Score=50.33 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 408
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.71 E-value=0.18 Score=52.55 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=57.1
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCc----EEEEEEeCCc-CCHHHHHHHHHHHcCCCcc---
Q 048789 166 VWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFD----FVIWIVVSKD-LQLAKIQEGIAKKMGLFNE--- 236 (724)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~----~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~--- 236 (724)
.++.|.. .+-..++|.|..|+|||+|+.++.+.. . .+-+ .++++-+++. ....++.+++... +....
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~-g~~~rtvv 216 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-T--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQT-GAIDRSVM 216 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-B--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHH-TGGGGEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-H--hccCCCceEEEEEEecCCcHHHHHHHHHHhhc-CCccceEE
Confidence 3444443 233457899999999999999999886 2 2223 5667777654 3456666665543 11100
Q ss_pred --ccCCcCHHH------HHHHHHHHH---ccCceEEEeccccC
Q 048789 237 --SWQSKGLEE------KANKIFKIL---SKKKFVLLLDDIWE 268 (724)
Q Consensus 237 --~~~~~~~~~------~~~~l~~~l---~~k~~LlVlDdv~~ 268 (724)
.....+... ..-.+-+++ .++.+|+++||+-.
T Consensus 217 V~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 217 FMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 001122211 122233444 36899999999853
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.61 E-value=0.11 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++|.|+|+.|+||||||..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999886
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.55 E-value=0.19 Score=47.75 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999998
No 411
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.49 E-value=0.076 Score=49.66 Aligned_cols=24 Identities=33% Similarity=0.198 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
-.+++|+|+.|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999998865
No 412
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.47 E-value=0.16 Score=50.80 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCC
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSK 216 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 216 (724)
...++|+|+|-||+||||+|..++....+ . . ..++-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~-G-~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L-G-KRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T-T-CCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C-C-CeEEEEeCCC
Confidence 46789999999999999999998888732 1 2 2355555543
No 413
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.40 E-value=0.092 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999998765
No 414
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.32 E-value=0.12 Score=47.67 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998764
No 415
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.32 E-value=0.74 Score=49.61 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKK 230 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 230 (724)
.-.++.|.|.+|+||||+|.+++.... . .+-..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 345899999999999999999988872 1 1123577776644 466777766544
No 416
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.30 E-value=0.094 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34699999999999999999998754
No 417
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.29 E-value=0.11 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
.-.+++|+|+.|+|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3459999999999999999999884
No 418
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.28 E-value=0.094 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999998765
No 419
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.25 E-value=0.13 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998876
No 420
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.18 E-value=0.49 Score=58.64 Aligned_cols=87 Identities=22% Similarity=0.164 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-.++.|+|.+|+||||||.+++.... ..-..++|++....++... ++.++...+. ....+.++..+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 456999999999999999999988873 2224688888877766542 5556554321 1234566666666
Q ss_pred HHHHc-cCceEEEeccccC
Q 048789 251 FKILS-KKKFVLLLDDIWE 268 (724)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~~ 268 (724)
+...+ .+.-++|+|.+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 65443 4566999999854
No 421
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.17 E-value=0.4 Score=58.53 Aligned_cols=84 Identities=23% Similarity=0.208 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCcccc---CCcCHHHHHHHHH
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESW---QSKGLEEKANKIF 251 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 251 (724)
-++|-|+|+.|+||||||..+.... +..-..++|+...+..++.- ++.++.+.++. ++..-++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 4699999999999999999998766 34456788998888777664 77777765432 3444566666666
Q ss_pred HHHcc-CceEEEeccc
Q 048789 252 KILSK-KKFVLLLDDI 266 (724)
Q Consensus 252 ~~l~~-k~~LlVlDdv 266 (724)
..++. ..-++|+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 66654 5558888887
No 422
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.14 E-value=0.14 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35699999999999999999998876
No 423
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.12 E-value=0.12 Score=50.55 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999885
No 424
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.09 E-value=0.1 Score=50.08 Aligned_cols=26 Identities=42% Similarity=0.520 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34599999999999999999998765
No 425
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.07 E-value=0.13 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998876
No 426
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.04 E-value=0.24 Score=45.53 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=26.3
Q ss_pred CcceEEEeecc-ccccc----ChhhhhcCCCceEEEccCCC-------CCchhhhccccCCeeecCCCCcc
Q 048789 392 PRLRTLFLSSN-IFHRV----NSDFFQSMASLRVLKLSYSN-------PLLFEISKVVSLQHLDLSHSRIE 450 (724)
Q Consensus 392 ~~Lr~L~l~~~-~~~~~----~~~~~~~l~~Lr~L~l~~~~-------~lp~~i~~L~~L~~L~L~~~~i~ 450 (724)
+.|+.|+++++ .+... .-..+..-.+|+.|+|++|. .+-+.+..-..|++|+|++|.|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45566666653 33221 11123334455555555554 22233333444555555555443
No 427
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.04 E-value=0.1 Score=50.64 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34599999999999999999998764
No 428
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.02 E-value=0.1 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44699999999999999999998755
No 429
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.02 E-value=0.1 Score=50.72 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999988765
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.01 E-value=0.089 Score=49.41 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998765
No 431
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.98 E-value=0.11 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34599999999999999999998765
No 432
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.95 E-value=0.11 Score=49.91 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999988754
No 433
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.91 E-value=0.11 Score=50.10 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|+|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997765
No 434
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.86 E-value=0.15 Score=44.98 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-|.++|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998764
No 435
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.81 E-value=0.11 Score=50.28 Aligned_cols=26 Identities=42% Similarity=0.544 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999998764
No 436
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.78 E-value=0.48 Score=57.86 Aligned_cols=87 Identities=22% Similarity=0.169 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccc---cCCcCHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNES---WQSKGLEEKANKI 250 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (724)
.-+++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++...+. ....+.++..+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 456999999999999999999888762 123468899887777654 25566654322 1234566666666
Q ss_pred HHHHc-cCceEEEeccccC
Q 048789 251 FKILS-KKKFVLLLDDIWE 268 (724)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~~ 268 (724)
+...+ .+.-++|+|.+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 65443 4566999999864
No 437
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.77 E-value=0.13 Score=47.54 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 438
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.76 E-value=0.16 Score=50.98 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|+|.+|+||||++..++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 439
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.74 E-value=0.16 Score=49.41 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999877
No 440
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.73 E-value=0.15 Score=49.59 Aligned_cols=110 Identities=14% Similarity=0.213 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE-eCCcCCHHHHHHHHHH--HcCCCccccCCcCHHHHHHH
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV-VSKDLQLAKIQEGIAK--KMGLFNESWQSKGLEEKANK 249 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~ 249 (724)
..-.+++|+|+.|+||||+++.+..... ..+...+++. ..-.+-.... ..+.. .++. .. ......
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~---~~l~~~ 90 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DT---KSFADA 90 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TB---SCHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CH---HHHHHH
Confidence 4557999999999999999999887652 1112222222 1100000000 00000 0010 01 122455
Q ss_pred HHHHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHH
Q 048789 250 IFKILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEV 298 (724)
Q Consensus 250 l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v 298 (724)
+...+..++=++++|+..+......+... ...| ..|++||...++
T Consensus 91 la~aL~~~p~illlDEp~D~~~~~~~l~~---~~~g-~~vl~t~H~~~~ 135 (261)
T 2eyu_A 91 LRAALREDPDVIFVGEMRDLETVETALRA---AETG-HLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHCCSEEEESCCCSHHHHHHHHHH---HHTT-CEEEEEECCSSH
T ss_pred HHHHHhhCCCEEEeCCCCCHHHHHHHHHH---HccC-CEEEEEeCcchH
Confidence 66666667778889998654333322111 1234 668888877554
No 441
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.70 E-value=1.3 Score=46.58 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=56.1
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHHhccCCCCCCcEEEEEEeCCcC-CHHHHHHHHHHHcCCCccc----c
Q 048789 166 VWKCLME-EQMGIVGLYGMGGVGKTTLL-TQINNKFLDTPNSFDFVIWIVVSKDL-QLAKIQEGIAKKMGLFNES----W 238 (724)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~----~ 238 (724)
.++.+.. .+-..++|.|..|+|||+|| ..+.+.. ..-..++++-+++.. ...++.+.+.+.=...... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4455544 34457899999999999996 5666643 222246788888764 4566666654431111100 0
Q ss_pred CCcCHH----------HHHHHHHHHHccCceEEEeccccC
Q 048789 239 QSKGLE----------EKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 239 ~~~~~~----------~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
...+.. ..++.+++ +++.+|+++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 111111 12233332 57999999999853
No 442
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.64 E-value=0.17 Score=49.99 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999876
No 443
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.61 E-value=0.15 Score=50.67 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455699999999999999999998765
No 444
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.60 E-value=0.15 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999998753
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.59 E-value=0.12 Score=50.24 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44699999999999999999998764
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.59 E-value=0.14 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 447
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.58 E-value=0.12 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999998765
No 448
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.52 E-value=0.12 Score=49.73 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999988765
No 449
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.49 E-value=0.68 Score=48.72 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=56.6
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHHhccCCCCCCc-EEEEEEeCCcC-CHHHHHHHHHHHcCCCcc----c
Q 048789 166 VWKCLME-EQMGIVGLYGMGGVGKTTLL-TQINNKFLDTPNSFD-FVIWIVVSKDL-QLAKIQEGIAKKMGLFNE----S 237 (724)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~ 237 (724)
.++.+.. .+-..++|+|..|+|||+|| .++.+.. .-+ .++++-+++.. ...++.+.+...=..... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4555544 34457899999999999995 5777764 235 35777777664 455666666542211110 0
Q ss_pred cCCcCHHHH------HHHHHHHH--ccCceEEEeccccC
Q 048789 238 WQSKGLEEK------ANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 238 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
....+.... .-.+-+++ +++.+|+++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 011111111 11222333 57999999999853
No 450
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.49 E-value=0.078 Score=52.58 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+..+|+|.|..|+||||+|+.+...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 451
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.47 E-value=0.31 Score=46.42 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEE
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIV 213 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (724)
...|.|.|+.|+||||+++.+..... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 46899999999999999999999873 23455344443
No 452
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.43 E-value=0.18 Score=48.26 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.42 E-value=0.34 Score=45.38 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHH
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 229 (724)
..|.|.|..|+||||+++.+..... ...+..+....-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5799999999999999999999873 233433344433333334455555554
No 454
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.41 E-value=0.13 Score=50.64 Aligned_cols=26 Identities=42% Similarity=0.500 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44699999999999999999998765
No 455
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.40 E-value=0.18 Score=48.39 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999987
No 456
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.40 E-value=0.62 Score=49.11 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=34.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAK 229 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 229 (724)
.-.++.|.|.+|+||||+|..++..... . -..++|++... +..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3458999999999999999999887732 2 23577776543 34445554443
No 457
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.38 E-value=0.13 Score=50.25 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|..|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44699999999999999999988764
No 458
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.37 E-value=0.13 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 459
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.33 E-value=0.16 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 460
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.26 E-value=0.12 Score=47.25 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 048789 177 IVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 461
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.22 E-value=0.09 Score=57.92 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=31.7
Q ss_pred CccccchhhHHHHHHHhhcCCce-----------EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 154 ATVVGLQSTFDGVWKCLMEEQMG-----------IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.++|.+..+..+.-.+..+..+ -|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34567666555554444333211 58999999999999999998775
No 462
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.22 E-value=0.43 Score=44.70 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcE
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDF 208 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~ 208 (724)
...|.|.|+.|+||||+++.+..... ...+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCc
Confidence 35899999999999999999999873 234554
No 463
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.20 E-value=1.7 Score=45.97 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHH
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIA 228 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 228 (724)
.-.++.|.|.+|+||||+|..++..... ..-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCC--CHHHHHHHHH
Confidence 3459999999999999999999887621 1123577776543 3456665554
No 464
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.13 E-value=0.47 Score=50.00 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=56.0
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHHhccCCCCCCc-EEEEEEeCCcC-CHHHHHHHHHHHcCCCcc----c
Q 048789 166 VWKCLME-EQMGIVGLYGMGGVGKTTLL-TQINNKFLDTPNSFD-FVIWIVVSKDL-QLAKIQEGIAKKMGLFNE----S 237 (724)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~ 237 (724)
.++.+.. .+-..++|+|..|+|||+|| .++.+.. .-+ .++++-+++.. ...++.+.+...=..... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 4455544 34457999999999999995 5777654 245 35777787664 455666666542111000 0
Q ss_pred cCCcCHHH------HHHHHHHHH--ccCceEEEeccccC
Q 048789 238 WQSKGLEE------KANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 238 ~~~~~~~~------~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
....+... ..-.+-+++ +++.+|+++||+..
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 01111111 111222333 57999999999854
No 465
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.12 E-value=0.41 Score=48.32 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=34.0
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHH
Q 048789 170 LMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLA 221 (724)
Q Consensus 170 L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 221 (724)
+.....+++.+.|-||+||||+|..++.... ..-..++-|+.....+..
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChh
Confidence 3344567888899999999999999998883 222345566665444333
No 466
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.06 E-value=0.29 Score=50.87 Aligned_cols=101 Identities=12% Similarity=0.176 Sum_probs=56.6
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhccCCC--------CCCc-EEEEEEeCCcC-CHHHHHHHHHHHcCCC
Q 048789 166 VWKCLME-EQMGIVGLYGMGGVGKTTLLTQINNKFLDTP--------NSFD-FVIWIVVSKDL-QLAKIQEGIAKKMGLF 234 (724)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~v~~~~-~~~~~~~~i~~~l~~~ 234 (724)
.++.|.. .+-..++|.|..|+|||+|+.++.+.. ... ++=+ .++++-+++.. ...++.+.+.+. +..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~-g~~ 214 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT-GAL 214 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT-SGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc-ccc
Confidence 3444443 234467899999999999999999886 221 1112 56667776543 455666655442 111
Q ss_pred ccc-----cCCcC-HHH-----HHHHHHHHH---ccCceEEEeccccC
Q 048789 235 NES-----WQSKG-LEE-----KANKIFKIL---SKKKFVLLLDDIWE 268 (724)
Q Consensus 235 ~~~-----~~~~~-~~~-----~~~~l~~~l---~~k~~LlVlDdv~~ 268 (724)
... ....+ ... ..-.+-+++ +++.+|+++||+-.
T Consensus 215 ~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 215 SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp GGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 000 01111 111 122333444 36899999999853
No 467
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.06 E-value=0.16 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999998765
No 468
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.04 E-value=0.33 Score=49.27 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=32.7
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCC
Q 048789 170 LMEEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQ 219 (724)
Q Consensus 170 L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 219 (724)
+.....+++.+.|.||+||||+|..++...... ..-..+.-|+.....+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCC
Confidence 334566899999999999999999998877200 2223455566554433
No 469
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.04 E-value=0.16 Score=44.90 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 470
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.03 E-value=0.27 Score=52.49 Aligned_cols=44 Identities=11% Similarity=-0.061 Sum_probs=32.7
Q ss_pred cccchhhHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 156 VVGLQSTFDGVWKCLM--EEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 156 ~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3555555555555442 2355789999999999999999999998
No 471
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.93 E-value=0.28 Score=52.18 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 163 FDGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++.+.+.+.... +.+.|.|.+|+||||++..+....
T Consensus 34 v~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 34 FNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334444444433 499999999999999999998887
No 472
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.81 E-value=0.18 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 473
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.81 E-value=0.17 Score=49.91 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.++.|+|.+|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999988755
No 474
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.75 E-value=0.21 Score=51.35 Aligned_cols=27 Identities=22% Similarity=0.069 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455699999999999999999999865
No 475
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.68 E-value=0.15 Score=48.65 Aligned_cols=25 Identities=36% Similarity=0.271 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4569999999999999999988765
No 476
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.67 E-value=0.19 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 477
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.66 E-value=0.25 Score=51.30 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 173 EQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 173 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....+++|+|..|+|||||.+.+....
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 356799999999999999999998843
No 478
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.64 E-value=0.18 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998764
No 479
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.62 E-value=0.21 Score=46.42 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 164 DGVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
+.+.+.......--|+|+|.+|+|||||+..+.+..
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333333333455678999999999999999888654
No 480
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.62 E-value=0.36 Score=50.37 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=25.3
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 171 MEEQMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 171 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....-.+++|+|+.|+||||+.+.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34566799999999999999999998876
No 481
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.58 E-value=0.34 Score=47.25 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeC
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVS 215 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~ 215 (724)
++|+|.|-||+||||+|..++.... +... .+.-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~-~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGK-TIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTC-CEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCC-cEEEEcCC
Confidence 5788899999999999999998873 1222 34455544
No 482
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.56 E-value=0.16 Score=49.31 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 175 MGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 175 ~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998764
No 483
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.54 E-value=0.19 Score=45.96 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998764
No 484
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.29 E-value=0.21 Score=44.34 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-|+++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998764
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.24 E-value=0.39 Score=43.73 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=26.0
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHh
Q 048789 165 GVWKCLMEEQMGIVGLYGMGGVGKTTLLTQINNK 198 (724)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 198 (724)
.+.+ +.......|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3445 44455678999999999999999999854
No 486
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.19 E-value=0.2 Score=50.85 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44699999999999999999998765
No 487
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.17 E-value=0.26 Score=45.19 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998764
No 488
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.15 E-value=0.18 Score=45.18 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468999999999999999987654
No 489
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.12 E-value=0.23 Score=51.03 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
++|.|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999887
No 490
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.07 E-value=0.24 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-|+++|.+|+|||||...+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999987654
No 491
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.05 E-value=0.22 Score=50.72 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 174 QMGIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45699999999999999999998765
No 492
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.05 E-value=0.46 Score=50.09 Aligned_cols=88 Identities=11% Similarity=0.170 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhccCCCCCCc-EEEEEEeCCcC-CHHHHHHHHHHHcCC---------Cccc-cCC
Q 048789 174 QMGIVGLYGMGGVGKTTLL-TQINNKFLDTPNSFD-FVIWIVVSKDL-QLAKIQEGIAKKMGL---------FNES-WQS 240 (724)
Q Consensus 174 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~i~~~l~~---------~~~~-~~~ 240 (724)
+-..++|+|..|+|||+|| .++.+.. .-+ .++++-+++.. ...++.+.+...=.. .+++ ...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3457899999999999995 5777654 134 45777777664 344555544431100 0000 000
Q ss_pred cCH----HHHHHHHHHHHccCceEEEeccccC
Q 048789 241 KGL----EEKANKIFKILSKKKFVLLLDDIWE 268 (724)
Q Consensus 241 ~~~----~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (724)
.-. -..++.+++ +++.+|+++||+..
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 266 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLSK 266 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 001 122334443 58999999999853
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.04 E-value=0.22 Score=44.19 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 048789 177 IVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 177 vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 494
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.00 E-value=1.1 Score=47.37 Aligned_cols=103 Identities=14% Similarity=0.163 Sum_probs=57.6
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHH-HHHHHHhccC---CCCCCc-EEEEEEeCCcC-CHHHHHHHHHHHcCCCcc--
Q 048789 166 VWKCLME-EQMGIVGLYGMGGVGKTTL-LTQINNKFLD---TPNSFD-FVIWIVVSKDL-QLAKIQEGIAKKMGLFNE-- 236 (724)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGvGKTtL-a~~v~~~~~~---~~~~f~-~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~-- 236 (724)
.++.+.. .+-..++|+|..|+|||+| ..++.+.... ..++-+ .++++-+++.. ...++.+.+...=.....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 4555554 3445789999999999999 4567776510 012344 57788888664 455666666542111100
Q ss_pred --ccCCcCHHH------HHHHHHHHH--ccCceEEEeccccC
Q 048789 237 --SWQSKGLEE------KANKIFKIL--SKKKFVLLLDDIWE 268 (724)
Q Consensus 237 --~~~~~~~~~------~~~~l~~~l--~~k~~LlVlDdv~~ 268 (724)
.....+... ..-.+-+++ +++.+|+++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 001111111 111222333 57999999999854
No 495
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.98 E-value=0.23 Score=46.86 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..++|.|++|+||||+|+.+...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 496
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.97 E-value=0.34 Score=49.35 Aligned_cols=115 Identities=12% Similarity=0.164 Sum_probs=62.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHhccCCCCCCcEEEEEEeCCcCCHHHHHHHHHHHcCCCccccCCcCHHHHHHHHH
Q 048789 172 EEQMGIVGLYGMGGVGKTTLLTQINNKFLDTPNSFDFVIWIVVSKDLQLAKIQEGIAKKMGLFNESWQSKGLEEKANKIF 251 (724)
Q Consensus 172 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (724)
.....+++|+|+.|+||||+.+.+........ -..++.+.-.-.+..... ..++.+ .. ...........+.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~-~~~v~q-----~~-~~~~~~~~~~~La 190 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESK-KCLVNQ-----RE-VHRDTLGFSEALR 190 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCS-SSEEEE-----EE-BTTTBSCHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhcc-ccceee-----ee-eccccCCHHHHHH
Confidence 34456999999999999999999887652110 012222221111100000 000000 00 0111122344777
Q ss_pred HHHccCceEEEeccccChhchhhccCCCCCCCCCCcEEEEecCChHHH
Q 048789 252 KILSKKKFVLLLDDIWELVDLAQVGLPVSSCASSSNKIVFTTREIEVC 299 (724)
Q Consensus 252 ~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~g~s~iliTtr~~~v~ 299 (724)
..|..++=++++|+..+...++.+... ...| ..|++|+...+.+
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~---~~~G-~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTA---AETG-HLVFGTLHTTSAA 234 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHH---HHTT-CEEEEEESCSSHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHH---HhcC-CEEEEEEccChHH
Confidence 888888889999999876554443222 1234 6688888876654
No 497
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.96 E-value=0.22 Score=44.36 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
--|+|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999988663
No 498
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.95 E-value=0.22 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
--|.|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 499
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.92 E-value=0.22 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
--|.|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999998877653
No 500
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.92 E-value=0.21 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 048789 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (724)
Q Consensus 176 ~vi~I~G~gGvGKTtLa~~v~~~~ 199 (724)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
Done!