Query 048793
Match_columns 683
No_of_seqs 454 out of 2509
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 5.1E-26 1.1E-30 277.9 31.5 278 369-654 11-312 (2102)
2 PLN03200 cellulose synthase-in 99.9 5.6E-26 1.2E-30 277.6 31.1 285 369-661 444-818 (2102)
3 KOG0166 Karyopherin (importin) 99.9 7E-25 1.5E-29 237.3 25.3 278 370-654 108-393 (514)
4 KOG4224 Armadillo repeat prote 99.9 2.3E-23 5.1E-28 211.3 19.4 272 372-654 127-405 (550)
5 KOG4224 Armadillo repeat prote 99.9 7.4E-23 1.6E-27 207.7 20.8 274 369-654 165-446 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 4.4E-22 9.5E-27 200.5 16.0 282 369-656 112-400 (526)
7 KOG0166 Karyopherin (importin) 99.9 8.5E-21 1.8E-25 205.7 24.8 282 369-657 150-439 (514)
8 PF04564 U-box: U-box domain; 99.8 2.4E-21 5.2E-26 159.6 5.8 72 273-344 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.8 1.8E-18 3.9E-23 174.6 20.8 279 369-654 155-443 (526)
10 PF05804 KAP: Kinesin-associat 99.7 2.7E-16 5.8E-21 179.6 26.1 271 369-654 288-564 (708)
11 KOG4642 Chaperone-dependent E3 99.7 2.1E-16 4.6E-21 153.5 13.5 242 67-346 32-281 (284)
12 PF05804 KAP: Kinesin-associat 99.7 6.1E-15 1.3E-19 168.6 25.7 251 386-653 263-519 (708)
13 KOG1048 Neural adherens juncti 99.6 1.4E-14 3E-19 162.2 21.1 276 372-655 234-596 (717)
14 KOG2122 Beta-catenin-binding p 99.6 3.7E-14 8E-19 163.9 21.2 289 366-658 285-605 (2195)
15 smart00504 Ubox Modified RING 99.6 8.4E-16 1.8E-20 123.2 5.4 63 276-339 1-63 (63)
16 KOG4199 Uncharacterized conser 99.5 2.5E-12 5.4E-17 130.6 24.3 273 373-653 147-443 (461)
17 KOG4199 Uncharacterized conser 99.5 2.1E-11 4.6E-16 123.9 25.0 262 385-657 120-406 (461)
18 PF04826 Arm_2: Armadillo-like 99.5 4.2E-12 9.1E-17 129.8 19.3 190 371-571 12-204 (254)
19 KOG1048 Neural adherens juncti 99.4 3.4E-11 7.3E-16 135.3 22.2 280 369-656 273-686 (717)
20 PF04826 Arm_2: Armadillo-like 99.3 2E-10 4.2E-15 117.6 21.0 224 411-644 9-252 (254)
21 PF10508 Proteasom_PSMB: Prote 99.3 1.9E-09 4.1E-14 121.9 28.3 276 370-654 76-366 (503)
22 cd00020 ARM Armadillo/beta-cat 99.2 4.3E-10 9.3E-15 101.2 12.9 117 409-532 2-120 (120)
23 KOG1222 Kinesin associated pro 99.1 4.4E-09 9.6E-14 111.4 18.9 257 369-637 302-602 (791)
24 KOG2122 Beta-catenin-binding p 99.1 2.7E-09 5.8E-14 124.6 17.8 223 386-613 365-604 (2195)
25 cd00020 ARM Armadillo/beta-cat 99.1 2.1E-09 4.6E-14 96.6 13.2 115 369-490 5-120 (120)
26 PRK09687 putative lyase; Provi 98.9 1.1E-07 2.5E-12 99.2 21.0 221 372-650 55-278 (280)
27 PLN03208 E3 ubiquitin-protein 98.9 6.4E-10 1.4E-14 106.6 3.6 61 271-331 13-88 (193)
28 PF15227 zf-C3HC4_4: zinc fing 98.9 9.8E-10 2.1E-14 80.0 3.0 39 279-317 1-42 (42)
29 TIGR00599 rad18 DNA repair pro 98.8 3E-09 6.4E-14 114.1 5.8 69 272-341 22-90 (397)
30 PF10508 Proteasom_PSMB: Prote 98.8 7.1E-07 1.5E-11 101.1 24.2 272 376-660 43-325 (503)
31 KOG4500 Rho/Rac GTPase guanine 98.8 5.5E-07 1.2E-11 94.9 20.9 264 371-638 87-458 (604)
32 KOG1222 Kinesin associated pro 98.7 3.7E-06 8.1E-11 89.7 25.1 282 361-654 336-663 (791)
33 KOG4500 Rho/Rac GTPase guanine 98.7 9.5E-07 2.1E-11 93.1 20.2 277 375-654 227-519 (604)
34 PRK09687 putative lyase; Provi 98.7 1.2E-06 2.7E-11 91.5 20.7 228 370-654 22-250 (280)
35 PF11789 zf-Nse: Zinc-finger o 98.7 5E-09 1.1E-13 81.4 1.6 44 275-318 10-55 (57)
36 cd00256 VATPase_H VATPase_H, r 98.7 7.1E-06 1.5E-10 89.6 25.6 269 375-652 105-423 (429)
37 KOG0946 ER-Golgi vesicle-tethe 98.6 1.7E-05 3.7E-10 89.3 24.9 278 370-654 21-346 (970)
38 PF13923 zf-C3HC4_2: Zinc fing 98.5 5.1E-08 1.1E-12 70.0 2.9 38 279-317 1-39 (39)
39 PF03224 V-ATPase_H_N: V-ATPas 98.5 1.5E-06 3.3E-11 92.6 14.9 178 373-554 107-293 (312)
40 PRK13800 putative oxidoreducta 98.5 1.4E-05 2.9E-10 97.0 24.3 228 370-652 620-865 (897)
41 PF03224 V-ATPase_H_N: V-ATPas 98.5 4.8E-06 1E-10 88.7 17.4 213 373-591 57-292 (312)
42 PF13445 zf-RING_UBOX: RING-ty 98.4 1.5E-07 3.3E-12 68.5 2.1 36 279-315 1-43 (43)
43 PRK13800 putative oxidoreducta 98.4 3.8E-05 8.2E-10 93.2 23.9 228 370-651 651-896 (897)
44 PF00097 zf-C3HC4: Zinc finger 98.3 6.4E-07 1.4E-11 65.0 3.2 39 279-317 1-41 (41)
45 KOG2160 Armadillo/beta-catenin 98.3 4.7E-05 1E-09 79.7 17.8 177 384-567 95-277 (342)
46 KOG0823 Predicted E3 ubiquitin 98.3 5E-07 1.1E-11 88.4 3.0 57 275-331 46-104 (230)
47 KOG0287 Postreplication repair 98.2 4.4E-07 9.6E-12 92.2 2.5 64 275-339 22-85 (442)
48 PF14835 zf-RING_6: zf-RING of 98.2 6.1E-07 1.3E-11 69.9 1.8 58 276-336 7-65 (65)
49 PHA02929 N1R/p28-like protein; 98.2 1.3E-06 2.7E-11 87.9 4.2 49 273-322 171-227 (238)
50 PF13920 zf-C3HC4_3: Zinc fing 98.2 1.3E-06 2.9E-11 66.3 3.2 47 275-322 1-48 (50)
51 KOG0317 Predicted E3 ubiquitin 98.2 1.3E-06 2.8E-11 88.0 3.8 56 271-327 233-289 (293)
52 PF01602 Adaptin_N: Adaptin N 98.2 9.9E-05 2.1E-09 84.3 19.5 252 372-654 80-333 (526)
53 KOG0168 Putative ubiquitin fus 98.1 5.8E-05 1.3E-09 85.7 15.8 150 502-654 210-364 (1051)
54 KOG2160 Armadillo/beta-catenin 98.1 0.00013 2.8E-09 76.5 17.3 177 431-610 96-282 (342)
55 KOG2973 Uncharacterized conser 98.1 0.00099 2.1E-08 68.3 22.6 264 375-654 7-315 (353)
56 KOG0168 Putative ubiquitin fus 98.1 0.00013 2.7E-09 83.1 17.0 175 369-554 209-390 (1051)
57 KOG4646 Uncharacterized conser 98.0 5E-05 1.1E-09 68.6 10.8 124 370-500 15-139 (173)
58 PF01602 Adaptin_N: Adaptin N 98.0 0.00044 9.6E-09 79.0 21.8 253 371-656 114-371 (526)
59 cd00256 VATPase_H VATPase_H, r 98.0 0.0009 1.9E-08 73.4 22.2 195 371-571 53-257 (429)
60 KOG2177 Predicted E3 ubiquitin 98.0 3.5E-06 7.5E-11 89.0 3.5 68 273-343 10-77 (386)
61 cd00162 RING RING-finger (Real 98.0 5.7E-06 1.2E-10 60.6 3.6 43 278-320 1-44 (45)
62 KOG3678 SARM protein (with ste 98.0 0.00022 4.8E-09 76.2 15.9 264 369-654 178-452 (832)
63 KOG2042 Ubiquitin fusion degra 98.0 7.5E-06 1.6E-10 95.4 5.5 72 271-343 865-937 (943)
64 KOG0320 Predicted E3 ubiquitin 98.0 4.1E-06 8.9E-11 78.5 2.5 52 276-328 131-184 (187)
65 KOG2759 Vacuolar H+-ATPase V1 98.0 0.0018 3.9E-08 69.1 22.3 267 374-652 117-436 (442)
66 COG5432 RAD18 RING-finger-cont 97.9 4.9E-06 1.1E-10 83.0 2.8 64 276-340 25-88 (391)
67 PF13639 zf-RING_2: Ring finge 97.9 4.4E-06 9.5E-11 61.6 1.6 40 278-318 2-44 (44)
68 PF05536 Neurochondrin: Neuroc 97.9 0.00052 1.1E-08 78.3 18.9 233 415-655 6-262 (543)
69 PF00514 Arm: Armadillo/beta-c 97.9 2.1E-05 4.5E-10 57.0 4.4 40 403-446 1-40 (41)
70 KOG2171 Karyopherin (importin) 97.9 0.00096 2.1E-08 78.9 20.3 233 373-614 350-598 (1075)
71 KOG2023 Nuclear transport rece 97.9 0.00029 6.4E-09 78.3 15.0 272 371-656 128-465 (885)
72 smart00184 RING Ring finger. E 97.8 1.5E-05 3.4E-10 56.1 3.4 39 279-317 1-39 (39)
73 COG5113 UFD2 Ubiquitin fusion 97.8 4.3E-05 9.4E-10 83.9 7.5 73 270-343 848-921 (929)
74 KOG0978 E3 ubiquitin ligase in 97.8 0.00096 2.1E-08 76.1 18.5 54 275-328 642-695 (698)
75 KOG4646 Uncharacterized conser 97.8 0.00019 4E-09 65.0 10.2 130 460-591 16-147 (173)
76 TIGR02270 conserved hypothetic 97.7 0.0035 7.5E-08 69.0 20.9 208 373-654 88-296 (410)
77 KOG0311 Predicted E3 ubiquitin 97.7 6.4E-06 1.4E-10 84.9 -0.6 68 272-339 39-108 (381)
78 PHA02926 zinc finger-like prot 97.7 2.6E-05 5.7E-10 75.9 3.4 51 272-322 166-230 (242)
79 TIGR00570 cdk7 CDK-activating 97.7 5.3E-05 1.1E-09 78.4 5.8 52 275-326 2-58 (309)
80 KOG2171 Karyopherin (importin) 97.7 0.0076 1.6E-07 71.6 23.9 273 374-654 162-504 (1075)
81 PF05536 Neurochondrin: Neuroc 97.7 0.0032 6.9E-08 71.9 20.1 234 372-611 6-262 (543)
82 PF00514 Arm: Armadillo/beta-c 97.6 7.6E-05 1.7E-09 54.0 4.0 40 492-532 2-41 (41)
83 PTZ00429 beta-adaptin; Provisi 97.6 0.014 2.9E-07 68.9 24.0 254 374-654 71-326 (746)
84 KOG0289 mRNA splicing factor [ 97.5 0.00015 3.2E-09 76.8 5.8 51 277-328 1-52 (506)
85 COG5574 PEX10 RING-finger-cont 97.5 7.1E-05 1.5E-09 74.7 2.8 52 273-324 212-264 (271)
86 PTZ00429 beta-adaptin; Provisi 97.4 0.022 4.8E-07 67.2 23.5 180 372-567 141-321 (746)
87 KOG1293 Proteins containing ar 97.4 0.0012 2.6E-08 73.8 12.2 152 385-542 390-544 (678)
88 COG5222 Uncharacterized conser 97.4 0.00017 3.6E-09 72.5 4.5 66 277-342 275-342 (427)
89 PF14664 RICTOR_N: Rapamycin-i 97.4 0.039 8.4E-07 60.1 22.9 270 375-654 29-364 (371)
90 KOG2164 Predicted E3 ubiquitin 97.4 0.00012 2.6E-09 79.5 3.4 72 273-344 183-262 (513)
91 PF14634 zf-RING_5: zinc-RING 97.4 0.00015 3.2E-09 53.4 2.9 40 279-319 2-44 (44)
92 KOG0946 ER-Golgi vesicle-tethe 97.3 0.004 8.7E-08 70.8 14.9 236 372-612 62-348 (970)
93 KOG1789 Endocytosis protein RM 97.3 0.047 1E-06 64.0 23.2 253 375-636 1775-2141(2235)
94 KOG2759 Vacuolar H+-ATPase V1 97.3 0.017 3.7E-07 61.8 18.3 229 376-610 161-438 (442)
95 PF13646 HEAT_2: HEAT repeats; 97.3 0.0011 2.5E-08 56.0 8.0 87 373-486 1-88 (88)
96 KOG0297 TNF receptor-associate 97.2 0.00025 5.4E-09 77.6 3.7 67 272-339 17-85 (391)
97 PF13646 HEAT_2: HEAT repeats; 97.2 0.0016 3.5E-08 55.1 8.0 86 416-528 1-88 (88)
98 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.00057 1.2E-08 56.2 3.7 39 279-318 22-73 (73)
99 smart00185 ARM Armadillo/beta- 97.1 0.0012 2.6E-08 47.2 5.0 38 405-446 3-40 (41)
100 PF10165 Ric8: Guanine nucleot 97.0 0.087 1.9E-06 59.0 22.0 247 385-636 45-359 (446)
101 COG5240 SEC21 Vesicle coat com 97.0 0.25 5.4E-06 55.0 24.2 257 372-654 265-555 (898)
102 KOG4159 Predicted E3 ubiquitin 97.0 0.0006 1.3E-08 73.8 4.1 72 270-342 78-154 (398)
103 KOG1242 Protein containing ada 97.0 0.045 9.7E-07 61.4 18.5 186 462-656 256-447 (569)
104 KOG2660 Locus-specific chromos 97.0 0.00045 9.8E-09 71.2 2.8 64 272-336 11-79 (331)
105 KOG4413 26S proteasome regulat 96.9 0.15 3.2E-06 53.1 20.1 229 378-613 89-336 (524)
106 PF12348 CLASP_N: CLASP N term 96.9 0.0077 1.7E-07 60.9 11.2 182 471-657 17-209 (228)
107 KOG2734 Uncharacterized conser 96.9 0.12 2.5E-06 55.9 19.6 241 369-612 123-402 (536)
108 KOG1293 Proteins containing ar 96.8 0.031 6.8E-07 62.8 15.9 232 376-612 14-263 (678)
109 COG1413 FOG: HEAT repeat [Ener 96.7 0.091 2E-06 56.4 18.7 184 414-652 43-240 (335)
110 smart00185 ARM Armadillo/beta- 96.7 0.0024 5.3E-08 45.6 4.5 39 493-532 3-41 (41)
111 PF14664 RICTOR_N: Rapamycin-i 96.7 0.21 4.6E-06 54.4 20.5 251 395-656 6-271 (371)
112 KOG3678 SARM protein (with ste 96.6 0.025 5.5E-07 60.9 12.4 162 407-576 173-340 (832)
113 COG1413 FOG: HEAT repeat [Ener 96.6 0.31 6.7E-06 52.3 21.2 182 371-605 43-237 (335)
114 PF12348 CLASP_N: CLASP N term 96.5 0.039 8.5E-07 55.7 13.2 187 381-614 17-210 (228)
115 COG5369 Uncharacterized conser 96.5 0.044 9.6E-07 60.3 13.8 257 390-653 407-740 (743)
116 PF05659 RPW8: Arabidopsis bro 96.4 0.068 1.5E-06 50.2 12.9 107 45-156 26-133 (147)
117 TIGR02270 conserved hypothetic 96.3 0.25 5.5E-06 54.5 18.9 179 372-610 118-296 (410)
118 KOG0212 Uncharacterized conser 96.3 0.11 2.3E-06 57.7 15.4 232 370-611 207-445 (675)
119 PF13513 HEAT_EZ: HEAT-like re 96.2 0.0093 2E-07 45.9 5.1 55 475-530 1-55 (55)
120 KOG0212 Uncharacterized conser 96.2 0.46 9.9E-06 52.9 19.4 269 371-655 167-445 (675)
121 KOG2973 Uncharacterized conser 96.2 0.55 1.2E-05 48.7 18.7 170 371-550 44-224 (353)
122 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.0043 9.4E-08 64.2 3.5 54 273-328 110-167 (260)
123 PF10165 Ric8: Guanine nucleot 96.1 0.63 1.4E-05 52.1 20.7 258 393-654 2-337 (446)
124 KOG2734 Uncharacterized conser 96.1 1.1 2.4E-05 48.7 20.9 237 389-633 101-369 (536)
125 COG5231 VMA13 Vacuolar H+-ATPa 96.0 0.3 6.4E-06 50.8 15.9 221 431-653 162-427 (432)
126 KOG2023 Nuclear transport rece 95.9 0.19 4.1E-06 56.8 15.1 266 371-655 174-506 (885)
127 PF12861 zf-Apc11: Anaphase-pr 95.9 0.0081 1.8E-07 50.2 3.5 48 275-322 31-82 (85)
128 KOG1002 Nucleotide excision re 95.8 0.0039 8.5E-08 67.5 1.7 51 275-325 535-589 (791)
129 KOG0802 E3 ubiquitin ligase [P 95.8 0.0041 8.8E-08 71.4 1.7 47 274-321 289-340 (543)
130 KOG0824 Predicted E3 ubiquitin 95.7 0.0053 1.2E-07 62.6 2.0 47 278-324 9-55 (324)
131 KOG4413 26S proteasome regulat 95.7 0.84 1.8E-05 47.7 17.6 233 369-610 126-377 (524)
132 KOG1813 Predicted E3 ubiquitin 95.6 0.0065 1.4E-07 61.8 2.0 44 277-321 242-285 (313)
133 PF11841 DUF3361: Domain of un 95.5 0.19 4.2E-06 47.5 11.5 123 409-532 6-131 (160)
134 KOG1789 Endocytosis protein RM 95.5 0.24 5.1E-06 58.5 14.1 140 387-533 1740-1884(2235)
135 KOG4628 Predicted E3 ubiquitin 95.5 0.0093 2E-07 63.1 2.9 47 277-323 230-279 (348)
136 KOG2979 Protein involved in DN 95.5 0.013 2.8E-07 58.7 3.7 46 275-320 175-222 (262)
137 COG5181 HSH155 U2 snRNP splice 95.5 0.34 7.3E-06 54.4 14.7 258 371-657 604-873 (975)
138 COG5540 RING-finger-containing 95.4 0.01 2.2E-07 60.3 2.7 47 277-323 324-373 (374)
139 KOG2879 Predicted E3 ubiquitin 95.3 0.013 2.8E-07 59.0 3.2 50 273-322 236-287 (298)
140 KOG3039 Uncharacterized conser 95.2 0.012 2.7E-07 58.1 2.5 37 272-308 39-75 (303)
141 KOG3039 Uncharacterized conser 95.1 0.016 3.4E-07 57.3 2.9 53 275-328 220-276 (303)
142 PF13513 HEAT_EZ: HEAT-like re 95.0 0.066 1.4E-06 41.0 5.8 55 386-445 1-55 (55)
143 KOG1248 Uncharacterized conser 95.0 1.3 2.8E-05 53.5 18.7 214 431-654 667-898 (1176)
144 COG5243 HRD1 HRD ubiquitin lig 95.0 0.017 3.6E-07 60.4 2.9 46 275-321 286-344 (491)
145 KOG0804 Cytoplasmic Zn-finger 95.0 0.008 1.7E-07 64.4 0.5 42 278-322 177-222 (493)
146 KOG3036 Protein involved in ce 95.0 0.63 1.4E-05 46.8 13.6 151 387-540 94-255 (293)
147 KOG1241 Karyopherin (importin) 94.9 1.3 2.9E-05 51.0 17.9 198 414-616 319-536 (859)
148 KOG0826 Predicted E3 ubiquitin 94.9 0.013 2.8E-07 60.4 1.9 52 270-322 294-346 (357)
149 PF09759 Atx10homo_assoc: Spin 94.8 0.11 2.4E-06 45.5 7.2 67 389-457 3-70 (102)
150 KOG0213 Splicing factor 3b, su 94.7 0.72 1.6E-05 52.9 14.7 258 372-654 800-1065(1172)
151 KOG1062 Vesicle coat complex A 94.5 2.5 5.4E-05 49.2 18.6 260 375-658 111-419 (866)
152 KOG1241 Karyopherin (importin) 94.4 3.6 7.8E-05 47.7 19.6 234 414-656 129-437 (859)
153 KOG2259 Uncharacterized conser 94.3 0.36 7.9E-06 54.6 11.4 104 539-651 368-472 (823)
154 COG5369 Uncharacterized conser 94.2 0.21 4.5E-06 55.2 9.0 164 372-542 432-604 (743)
155 KOG4367 Predicted Zn-finger pr 94.1 0.02 4.3E-07 60.8 1.1 34 274-307 2-35 (699)
156 COG5152 Uncharacterized conser 93.6 0.027 5.9E-07 53.8 1.0 44 277-321 197-240 (259)
157 KOG1061 Vesicle coat complex A 93.5 1.2 2.5E-05 51.7 13.8 264 372-659 122-420 (734)
158 KOG1242 Protein containing ada 93.5 2.7 5.8E-05 47.6 16.4 183 372-569 255-444 (569)
159 KOG2259 Uncharacterized conser 93.3 0.63 1.4E-05 52.8 10.9 214 376-612 203-476 (823)
160 PF11698 V-ATPase_H_C: V-ATPas 93.3 0.3 6.5E-06 44.0 7.0 71 371-445 43-113 (119)
161 PF04078 Rcd1: Cell differenti 93.2 1.3 2.8E-05 45.3 12.2 153 387-542 65-228 (262)
162 KOG2611 Neurochondrin/leucine- 93.2 3.3 7.1E-05 45.6 15.7 128 419-554 16-162 (698)
163 KOG1734 Predicted RING-contain 93.1 0.022 4.7E-07 57.1 -0.6 53 275-327 223-286 (328)
164 KOG1062 Vesicle coat complex A 93.1 3.6 7.8E-05 48.0 16.6 207 418-655 354-582 (866)
165 KOG1059 Vesicle coat complex A 93.0 13 0.00028 43.1 20.6 257 368-652 178-441 (877)
166 PF04063 DUF383: Domain of unk 92.9 0.76 1.6E-05 45.3 9.8 124 431-554 8-157 (192)
167 KOG3113 Uncharacterized conser 92.6 0.086 1.9E-06 52.5 2.8 51 274-327 109-163 (293)
168 COG5096 Vesicle coat complex, 92.5 3.4 7.3E-05 48.7 15.9 89 431-530 105-193 (757)
169 COG5096 Vesicle coat complex, 92.5 2.2 4.8E-05 50.1 14.4 96 380-491 101-196 (757)
170 KOG1078 Vesicle coat complex C 92.5 19 0.00042 42.1 21.3 252 373-654 247-532 (865)
171 PF11841 DUF3361: Domain of un 92.5 2.4 5.3E-05 40.2 12.1 117 502-618 10-139 (160)
172 KOG1824 TATA-binding protein-i 92.3 2.8 6.1E-05 49.6 14.7 263 375-658 9-290 (1233)
173 KOG1517 Guanine nucleotide bin 92.0 3.8 8.3E-05 49.1 15.4 214 392-611 487-733 (1387)
174 COG5215 KAP95 Karyopherin (imp 91.7 14 0.0003 41.8 18.4 266 378-656 101-439 (858)
175 PF02891 zf-MIZ: MIZ/SP-RING z 91.5 0.18 3.9E-06 38.1 2.8 45 276-320 2-50 (50)
176 PF12755 Vac14_Fab1_bd: Vacuol 91.5 0.89 1.9E-05 39.6 7.5 68 583-653 29-96 (97)
177 KOG0883 Cyclophilin type, U bo 91.5 0.14 3E-06 54.1 2.9 52 276-328 40-91 (518)
178 PF09759 Atx10homo_assoc: Spin 91.4 0.58 1.3E-05 41.0 6.2 65 477-542 2-70 (102)
179 KOG1645 RING-finger-containing 91.2 0.13 2.8E-06 54.8 2.3 59 277-335 5-69 (463)
180 PF06371 Drf_GBD: Diaphanous G 91.2 2.1 4.5E-05 41.6 10.8 115 371-489 66-186 (187)
181 COG5231 VMA13 Vacuolar H+-ATPa 91.1 18 0.00039 38.1 17.5 221 385-609 162-427 (432)
182 PF11698 V-ATPase_H_C: V-ATPas 91.1 0.46 1E-05 42.8 5.4 71 461-531 44-114 (119)
183 KOG3036 Protein involved in ce 91.0 20 0.00043 36.5 18.9 233 373-610 28-291 (293)
184 KOG1517 Guanine nucleotide bin 90.8 4.6 9.9E-05 48.4 14.3 159 370-533 511-672 (1387)
185 KOG2817 Predicted E3 ubiquitin 90.7 0.17 3.7E-06 54.0 2.7 41 277-317 335-380 (394)
186 PF12755 Vac14_Fab1_bd: Vacuol 90.7 0.98 2.1E-05 39.3 7.0 66 502-569 26-93 (97)
187 KOG1077 Vesicle coat complex A 90.5 19 0.00041 41.7 18.3 107 370-491 110-217 (938)
188 KOG1061 Vesicle coat complex A 90.3 2.7 5.9E-05 48.7 11.9 141 374-535 52-192 (734)
189 KOG1824 TATA-binding protein-i 90.3 10 0.00022 45.2 16.5 134 373-518 613-749 (1233)
190 PF05004 IFRD: Interferon-rela 90.1 12 0.00026 39.8 16.1 174 431-609 56-256 (309)
191 COG5181 HSH155 U2 snRNP splice 90.0 4.4 9.5E-05 45.9 12.8 164 415-592 605-773 (975)
192 PF08045 CDC14: Cell division 89.9 3.1 6.7E-05 42.7 10.9 98 387-488 106-205 (257)
193 KOG1248 Uncharacterized conser 89.8 13 0.00028 45.4 17.3 217 385-616 667-904 (1176)
194 KOG0213 Splicing factor 3b, su 89.8 5.5 0.00012 46.1 13.5 164 417-593 802-969 (1172)
195 PF04063 DUF383: Domain of unk 89.5 2.3 4.9E-05 41.9 9.4 101 412-513 50-157 (192)
196 PF05004 IFRD: Interferon-rela 88.8 21 0.00046 37.9 16.8 188 464-655 47-258 (309)
197 KOG1943 Beta-tubulin folding c 88.7 37 0.00081 41.3 19.7 255 369-656 339-617 (1133)
198 PF04078 Rcd1: Cell differenti 88.3 17 0.00037 37.3 14.9 229 385-653 8-261 (262)
199 KOG2611 Neurochondrin/leucine- 87.6 7.5 0.00016 42.9 12.3 132 376-512 16-161 (698)
200 KOG4692 Predicted E3 ubiquitin 87.6 0.61 1.3E-05 48.7 4.0 46 275-321 421-466 (489)
201 KOG0828 Predicted E3 ubiquitin 87.5 0.28 6.2E-06 53.3 1.7 51 273-323 568-635 (636)
202 KOG1059 Vesicle coat complex A 87.4 66 0.0014 37.6 22.3 251 370-654 143-402 (877)
203 KOG1077 Vesicle coat complex A 87.1 67 0.0015 37.5 20.8 118 391-524 308-425 (938)
204 PF12717 Cnd1: non-SMC mitotic 86.8 14 0.00031 35.7 13.1 111 385-514 1-112 (178)
205 KOG3800 Predicted E3 ubiquitin 86.7 0.47 1E-05 48.6 2.6 48 278-325 2-54 (300)
206 smart00744 RINGv The RING-vari 86.6 0.81 1.7E-05 34.4 3.2 40 279-318 2-49 (49)
207 KOG1039 Predicted E3 ubiquitin 86.6 0.43 9.4E-06 51.0 2.4 49 273-321 158-220 (344)
208 KOG1060 Vesicle coat complex A 86.3 29 0.00063 40.8 16.5 205 375-610 39-246 (968)
209 PF02985 HEAT: HEAT repeat; I 86.2 0.87 1.9E-05 30.5 2.9 29 504-532 1-29 (31)
210 PF02985 HEAT: HEAT repeat; I 85.6 1 2.2E-05 30.2 3.0 29 415-447 1-29 (31)
211 KOG0825 PHD Zn-finger protein 85.2 0.2 4.3E-06 57.3 -1.0 47 276-323 123-172 (1134)
212 KOG1060 Vesicle coat complex A 85.2 75 0.0016 37.6 19.1 136 511-658 295-462 (968)
213 KOG1785 Tyrosine kinase negati 85.1 0.39 8.4E-06 50.9 1.1 45 278-322 371-416 (563)
214 PF14570 zf-RING_4: RING/Ubox 84.9 0.71 1.5E-05 34.4 2.1 43 279-321 1-47 (48)
215 PF08324 PUL: PUL domain; Int 84.8 4.8 0.0001 41.7 9.2 173 374-549 66-249 (268)
216 PF12717 Cnd1: non-SMC mitotic 84.6 22 0.00048 34.4 13.2 138 372-529 26-176 (178)
217 PF12031 DUF3518: Domain of un 84.5 2.1 4.5E-05 43.3 5.9 84 432-516 138-229 (257)
218 PF11793 FANCL_C: FANCL C-term 84.5 0.37 7.9E-06 39.3 0.5 47 276-322 2-66 (70)
219 COG5627 MMS21 DNA repair prote 84.2 0.47 1E-05 46.9 1.2 54 276-329 189-246 (275)
220 PF06025 DUF913: Domain of Unk 83.5 53 0.0012 36.0 16.9 102 454-555 100-207 (379)
221 PF06371 Drf_GBD: Diaphanous G 83.4 4.1 8.9E-05 39.5 7.6 80 451-531 99-186 (187)
222 KOG4151 Myosin assembly protei 83.1 4.8 0.0001 46.9 8.8 137 389-530 559-697 (748)
223 PF04641 Rtf2: Rtf2 RING-finge 82.9 1.3 2.8E-05 45.9 3.9 36 274-309 32-68 (260)
224 COG5175 MOT2 Transcriptional r 82.8 0.79 1.7E-05 47.6 2.2 50 275-325 14-67 (480)
225 PF13764 E3_UbLigase_R4: E3 ub 82.7 40 0.00086 40.6 16.4 200 368-569 114-406 (802)
226 cd03572 ENTH_epsin_related ENT 82.6 4.6 0.0001 36.6 6.8 72 583-654 40-119 (122)
227 PF08045 CDC14: Cell division 82.5 11 0.00024 38.8 10.3 96 434-531 107-206 (257)
228 PF14668 RICTOR_V: Rapamycin-i 82.4 4.2 9.2E-05 33.3 5.9 59 520-578 4-64 (73)
229 KOG0301 Phospholipase A2-activ 82.0 19 0.00041 41.4 12.6 161 385-555 557-727 (745)
230 PF12530 DUF3730: Protein of u 81.9 63 0.0014 32.8 16.0 136 416-571 2-150 (234)
231 KOG2999 Regulator of Rac1, req 81.5 50 0.0011 37.4 15.4 151 462-614 85-246 (713)
232 KOG2999 Regulator of Rac1, req 81.5 17 0.00037 40.9 11.9 156 373-531 85-241 (713)
233 KOG1058 Vesicle coat complex C 81.3 35 0.00076 40.0 14.5 130 385-534 219-348 (948)
234 KOG1001 Helicase-like transcri 81.2 0.4 8.7E-06 56.0 -0.6 46 277-323 455-501 (674)
235 PF11701 UNC45-central: Myosin 80.5 17 0.00038 34.4 10.4 145 375-529 7-156 (157)
236 KOG1058 Vesicle coat complex C 79.9 34 0.00074 40.0 13.8 30 505-534 245-274 (948)
237 KOG1240 Protein kinase contain 79.8 78 0.0017 39.2 17.2 267 373-657 424-728 (1431)
238 PF12031 DUF3518: Domain of un 79.7 4.7 0.0001 40.8 6.3 81 475-555 138-227 (257)
239 KOG2032 Uncharacterized conser 79.1 79 0.0017 35.4 15.8 158 412-571 252-414 (533)
240 PF08324 PUL: PUL domain; Int 79.0 42 0.00091 34.6 13.8 183 416-602 65-266 (268)
241 PF14500 MMS19_N: Dos2-interac 78.7 71 0.0015 33.1 15.0 218 378-613 6-240 (262)
242 COG5109 Uncharacterized conser 78.4 1.4 3E-05 45.6 2.2 42 277-318 337-383 (396)
243 PF12719 Cnd3: Nuclear condens 78.2 52 0.0011 34.7 14.3 161 378-554 34-207 (298)
244 KOG2274 Predicted importin 9 [ 78.2 62 0.0013 38.8 15.5 216 431-654 463-689 (1005)
245 PF05918 API5: Apoptosis inhib 77.7 21 0.00045 40.9 11.5 91 383-490 34-125 (556)
246 KOG0827 Predicted E3 ubiquitin 77.3 1.5 3.3E-05 46.6 2.2 48 274-321 2-55 (465)
247 KOG4172 Predicted E3 ubiquitin 76.9 0.84 1.8E-05 34.6 0.2 44 278-321 9-53 (62)
248 cd03568 VHS_STAM VHS domain fa 76.6 11 0.00024 35.4 7.6 72 582-654 38-110 (144)
249 PF12460 MMS19_C: RNAPII trans 76.3 28 0.0006 38.7 12.1 112 414-534 271-396 (415)
250 PF11701 UNC45-central: Myosin 75.6 5.9 0.00013 37.6 5.7 98 385-488 56-157 (157)
251 cd03569 VHS_Hrs_Vps27p VHS dom 75.6 12 0.00026 35.0 7.6 74 370-447 40-114 (142)
252 KOG2114 Vacuolar assembly/sort 75.6 16 0.00035 43.1 9.9 41 275-319 839-880 (933)
253 KOG0396 Uncharacterized conser 75.6 2.1 4.5E-05 45.5 2.7 48 277-324 331-381 (389)
254 KOG4151 Myosin assembly protei 75.4 31 0.00066 40.6 12.1 189 448-645 493-690 (748)
255 PF12719 Cnd3: Nuclear condens 74.3 17 0.00036 38.4 9.3 165 414-592 26-208 (298)
256 PF12460 MMS19_C: RNAPII trans 73.6 85 0.0019 34.8 15.1 184 461-654 190-394 (415)
257 PF14668 RICTOR_V: Rapamycin-i 73.4 13 0.00029 30.4 6.3 67 435-503 4-70 (73)
258 PF08569 Mo25: Mo25-like; Int 72.7 1.4E+02 0.0031 32.1 20.1 199 453-655 70-284 (335)
259 PF14447 Prok-RING_4: Prokaryo 72.7 2.4 5.3E-05 32.5 1.7 45 278-325 9-53 (55)
260 COG5194 APC11 Component of SCF 72.6 2.7 5.9E-05 34.5 2.1 43 278-321 33-80 (88)
261 cd03569 VHS_Hrs_Vps27p VHS dom 72.5 17 0.00037 33.9 7.8 73 582-655 42-115 (142)
262 COG5209 RCD1 Uncharacterized p 72.5 16 0.00034 36.6 7.7 150 388-540 116-276 (315)
263 TIGR00634 recN DNA repair prot 72.5 96 0.0021 35.9 15.7 76 53-134 182-263 (563)
264 PF08167 RIX1: rRNA processing 72.1 17 0.00036 34.8 7.9 93 461-554 26-126 (165)
265 KOG3161 Predicted E3 ubiquitin 71.4 2.1 4.5E-05 48.3 1.6 38 275-315 10-51 (861)
266 cd03561 VHS VHS domain family; 71.0 22 0.00048 32.7 8.1 73 582-655 38-113 (133)
267 PF08569 Mo25: Mo25-like; Int 70.9 88 0.0019 33.7 13.8 190 371-567 76-278 (335)
268 PF06416 DUF1076: Protein of u 70.7 3.1 6.8E-05 36.5 2.2 51 274-325 38-94 (113)
269 PF11707 Npa1: Ribosome 60S bi 70.2 1.6E+02 0.0034 31.6 18.4 160 373-535 58-240 (330)
270 KOG0414 Chromosome condensatio 69.9 34 0.00074 42.0 11.1 132 373-524 921-1056(1251)
271 cd03561 VHS VHS domain family; 69.7 23 0.00051 32.5 8.0 76 370-447 36-112 (133)
272 COG5219 Uncharacterized conser 69.7 1.8 3.9E-05 50.9 0.6 49 273-321 1466-1522(1525)
273 PF05918 API5: Apoptosis inhib 69.7 28 0.00061 39.9 10.0 97 371-486 59-158 (556)
274 cd03568 VHS_STAM VHS domain fa 69.6 22 0.00047 33.3 7.8 74 370-447 36-110 (144)
275 smart00288 VHS Domain present 69.1 24 0.00051 32.5 7.8 75 370-447 36-111 (133)
276 KOG0211 Protein phosphatase 2A 69.0 1.8E+02 0.0039 34.9 16.8 260 376-654 360-625 (759)
277 cd03567 VHS_GGA VHS domain fam 68.8 23 0.0005 32.9 7.7 72 582-654 39-116 (139)
278 KOG2025 Chromosome condensatio 68.7 2.2E+02 0.0047 33.6 16.4 116 413-542 84-200 (892)
279 PRK14707 hypothetical protein; 68.3 4.1E+02 0.0089 35.6 21.1 252 385-647 178-438 (2710)
280 PF08167 RIX1: rRNA processing 68.0 33 0.00071 32.8 8.9 112 414-532 25-143 (165)
281 PF12530 DUF3730: Protein of u 67.9 92 0.002 31.6 12.7 138 374-531 3-150 (234)
282 KOG0915 Uncharacterized conser 67.0 2.7E+02 0.0058 35.7 17.8 270 373-658 1000-1310(1702)
283 PF13764 E3_UbLigase_R4: E3 ub 67.0 2.9E+02 0.0064 33.4 21.8 240 409-654 112-406 (802)
284 COG5215 KAP95 Karyopherin (imp 66.8 2.4E+02 0.0053 32.4 17.8 153 367-533 317-480 (858)
285 KOG1493 Anaphase-promoting com 65.8 3.3 7.1E-05 33.8 1.2 49 274-322 29-81 (84)
286 cd03567 VHS_GGA VHS domain fam 65.7 27 0.00059 32.5 7.5 76 370-446 37-115 (139)
287 KOG2956 CLIP-associating prote 65.5 2.3E+02 0.005 31.7 15.9 137 503-650 329-473 (516)
288 KOG2062 26S proteasome regulat 63.4 1E+02 0.0022 36.3 12.6 108 431-556 568-677 (929)
289 KOG4535 HEAT and armadillo rep 62.5 19 0.00042 39.9 6.6 154 374-532 436-603 (728)
290 KOG0211 Protein phosphatase 2A 62.1 3.5E+02 0.0075 32.6 17.9 251 374-646 401-656 (759)
291 PF00790 VHS: VHS domain; Int 62.1 28 0.00061 32.2 7.0 73 582-655 43-119 (140)
292 KOG2274 Predicted importin 9 [ 61.9 3.6E+02 0.0079 32.7 18.2 255 372-637 531-809 (1005)
293 KOG1240 Protein kinase contain 61.5 1E+02 0.0022 38.3 12.7 190 462-655 424-686 (1431)
294 KOG1991 Nuclear transport rece 61.4 3.8E+02 0.0083 32.8 18.4 138 370-515 409-559 (1010)
295 KOG3002 Zn finger protein [Gen 59.2 11 0.00023 39.8 4.0 61 272-339 44-105 (299)
296 smart00288 VHS Domain present 59.2 38 0.00083 31.1 7.3 72 582-654 38-111 (133)
297 PRK10869 recombination and rep 58.8 3.4E+02 0.0074 31.4 16.6 53 53-108 178-230 (553)
298 KOG2062 26S proteasome regulat 58.2 3.8E+02 0.0083 31.8 16.8 141 502-660 553-701 (929)
299 KOG1943 Beta-tubulin folding c 57.9 3.8E+02 0.0082 33.2 16.5 218 413-658 340-577 (1133)
300 KOG2930 SCF ubiquitin ligase, 57.7 7 0.00015 33.8 1.9 27 293-320 80-106 (114)
301 KOG2025 Chromosome condensatio 56.2 90 0.002 36.5 10.7 116 370-499 84-199 (892)
302 KOG0298 DEAD box-containing he 56.1 3.3 7.2E-05 50.7 -0.4 47 272-319 1149-1196(1394)
303 PF11865 DUF3385: Domain of un 55.2 1.1E+02 0.0024 29.0 10.0 139 459-606 9-153 (160)
304 KOG2137 Protein kinase [Signal 55.2 53 0.0012 38.4 8.8 133 412-555 387-519 (700)
305 KOG3665 ZYG-1-like serine/thre 54.4 1.8E+02 0.0039 34.7 13.4 196 441-653 494-696 (699)
306 KOG0567 HEAT repeat-containing 53.8 2.8E+02 0.006 28.8 15.9 196 412-653 65-279 (289)
307 KOG2933 Uncharacterized conser 53.4 1.1E+02 0.0023 32.4 9.9 141 372-530 89-232 (334)
308 KOG1820 Microtubule-associated 53.3 2.3E+02 0.0051 34.3 14.1 176 431-615 266-448 (815)
309 PF00790 VHS: VHS domain; Int 53.1 1.1E+02 0.0024 28.3 9.4 90 391-490 24-118 (140)
310 PF11865 DUF3385: Domain of un 52.8 1.1E+02 0.0023 29.2 9.4 142 372-530 11-155 (160)
311 PF06025 DUF913: Domain of Unk 52.3 1.2E+02 0.0026 33.2 10.9 86 385-472 122-208 (379)
312 KOG0414 Chromosome condensatio 51.9 65 0.0014 39.7 9.2 126 415-556 920-1047(1251)
313 PF14225 MOR2-PAG1_C: Cell mor 51.7 3E+02 0.0064 28.6 14.7 141 406-569 103-251 (262)
314 KOG4362 Transcriptional regula 51.5 5.7 0.00012 46.0 0.5 47 276-322 21-69 (684)
315 PF05605 zf-Di19: Drought indu 51.2 16 0.00034 27.9 2.8 38 275-319 1-39 (54)
316 KOG4535 HEAT and armadillo rep 51.1 29 0.00063 38.5 5.7 170 478-651 408-600 (728)
317 COG2178 Predicted RNA-binding 50.5 1.9E+02 0.004 28.6 10.5 129 32-163 20-157 (204)
318 COG0497 RecN ATPase involved i 50.2 4.6E+02 0.0099 30.3 16.6 54 52-108 177-230 (557)
319 cd00197 VHS_ENTH_ANTH VHS, ENT 50.1 83 0.0018 27.8 7.8 71 582-653 38-114 (115)
320 KOG0567 HEAT repeat-containing 49.6 3.2E+02 0.007 28.4 16.3 198 371-610 67-280 (289)
321 COG5116 RPN2 26S proteasome re 49.0 99 0.0021 35.3 9.4 142 502-660 550-698 (926)
322 COG5240 SEC21 Vesicle coat com 48.8 4.8E+02 0.01 30.2 19.9 192 394-607 249-457 (898)
323 KOG1967 DNA repair/transcripti 48.3 69 0.0015 38.5 8.5 146 371-526 867-1018(1030)
324 KOG1571 Predicted E3 ubiquitin 48.2 7.7 0.00017 41.3 0.8 47 271-321 300-346 (355)
325 PF14726 RTTN_N: Rotatin, an a 47.6 1.8E+02 0.004 25.3 9.1 68 412-485 28-95 (98)
326 KOG4185 Predicted E3 ubiquitin 47.4 18 0.0004 38.0 3.6 52 288-339 21-77 (296)
327 COG2176 PolC DNA polymerase II 47.0 15 0.00033 45.0 3.0 40 272-323 910-951 (1444)
328 KOG2956 CLIP-associating prote 46.7 3.6E+02 0.0078 30.3 13.0 71 376-450 291-362 (516)
329 PF10363 DUF2435: Protein of u 46.6 57 0.0012 28.0 5.8 68 373-447 5-72 (92)
330 PRK14707 hypothetical protein; 46.4 9.1E+02 0.02 32.7 21.5 147 431-580 303-454 (2710)
331 PF10367 Vps39_2: Vacuolar sor 46.1 8.8 0.00019 33.5 0.8 35 270-304 72-108 (109)
332 COG5209 RCD1 Uncharacterized p 44.1 1.5E+02 0.0032 30.0 8.8 133 478-611 117-269 (315)
333 KOG3665 ZYG-1-like serine/thre 44.0 1.5E+02 0.0032 35.5 10.6 155 395-554 494-677 (699)
334 PF14205 Cys_rich_KTR: Cystein 43.9 16 0.00034 28.0 1.6 34 275-320 3-37 (55)
335 KOG4265 Predicted E3 ubiquitin 43.9 14 0.00031 39.2 2.0 45 277-322 291-336 (349)
336 KOG1820 Microtubule-associated 43.7 4.1E+02 0.0089 32.3 14.2 146 502-652 293-441 (815)
337 PRK11088 rrmA 23S rRNA methylt 42.9 12 0.00026 38.8 1.3 26 276-301 2-30 (272)
338 KOG2032 Uncharacterized conser 42.6 2.7E+02 0.0058 31.5 11.4 150 374-533 261-416 (533)
339 KOG4653 Uncharacterized conser 41.7 5.9E+02 0.013 30.9 14.5 210 432-654 741-964 (982)
340 KOG2933 Uncharacterized conser 41.5 1.4E+02 0.0031 31.5 8.7 130 466-604 94-228 (334)
341 PF00619 CARD: Caspase recruit 40.1 1.5E+02 0.0032 24.4 7.4 63 50-114 3-66 (85)
342 PF05290 Baculo_IE-1: Baculovi 40.1 28 0.00061 31.8 3.0 50 275-324 79-134 (140)
343 KOG4275 Predicted E3 ubiquitin 39.8 6.4 0.00014 40.5 -1.3 38 276-320 300-340 (350)
344 COG5116 RPN2 26S proteasome re 39.7 4.2E+02 0.0091 30.5 12.4 99 414-532 551-650 (926)
345 KOG4234 TPR repeat-containing 39.6 1.4E+02 0.003 29.8 7.8 49 92-140 144-200 (271)
346 KOG0301 Phospholipase A2-activ 39.4 2.7E+02 0.0058 32.6 11.0 133 372-515 590-728 (745)
347 COG5098 Chromosome condensatio 39.2 7.3E+02 0.016 29.5 16.8 102 547-652 302-413 (1128)
348 PF14353 CpXC: CpXC protein 38.8 18 0.00039 32.9 1.7 47 276-322 1-49 (128)
349 cd08330 CARD_ASC_NALP1 Caspase 38.7 1.2E+02 0.0027 25.3 6.5 53 52-106 4-56 (82)
350 KOG4464 Signaling protein RIC- 38.5 5.9E+02 0.013 28.2 13.1 87 385-471 110-198 (532)
351 PF12252 SidE: Dot/Icm substra 38.4 3.7E+02 0.008 33.2 12.2 142 92-247 1014-1173(1439)
352 PLN02189 cellulose synthase 37.7 24 0.00052 43.1 2.8 46 277-322 35-87 (1040)
353 KOG1814 Predicted E3 ubiquitin 37.0 35 0.00077 37.0 3.6 34 275-308 183-219 (445)
354 KOG4653 Uncharacterized conser 36.6 7.4E+02 0.016 30.1 14.2 168 474-654 740-918 (982)
355 KOG1940 Zn-finger protein [Gen 36.4 28 0.00061 36.1 2.7 43 276-319 158-204 (276)
356 KOG1967 DNA repair/transcripti 36.2 1.4E+02 0.003 36.2 8.4 137 413-555 866-1006(1030)
357 COG5220 TFB3 Cdk activating ki 36.1 20 0.00044 35.9 1.5 48 275-322 9-64 (314)
358 cd03565 VHS_Tom1 VHS domain fa 36.1 3.6E+02 0.0078 25.0 10.5 72 582-654 39-115 (141)
359 smart00531 TFIIE Transcription 35.6 20 0.00044 33.6 1.4 39 274-324 97-136 (147)
360 PF14726 RTTN_N: Rotatin, an a 35.5 1.6E+02 0.0034 25.7 6.8 59 496-554 23-81 (98)
361 COG5218 YCG1 Chromosome conden 35.3 2.2E+02 0.0047 32.8 9.4 115 413-541 90-205 (885)
362 PF01417 ENTH: ENTH domain; I 35.1 64 0.0014 29.1 4.7 93 560-654 20-121 (125)
363 PLN02195 cellulose synthase A 34.9 31 0.00067 41.9 3.1 45 278-322 8-59 (977)
364 KOG1243 Protein kinase [Genera 34.9 8.3E+02 0.018 28.9 14.2 342 280-652 165-513 (690)
365 KOG1991 Nuclear transport rece 34.8 9.6E+02 0.021 29.6 17.0 232 413-652 409-669 (1010)
366 PF06497 DUF1098: Protein of u 34.2 1.8E+02 0.0039 25.2 6.8 53 22-75 14-69 (95)
367 COG5218 YCG1 Chromosome conden 33.9 3.9E+02 0.0085 30.9 11.0 112 369-494 89-200 (885)
368 PF07814 WAPL: Wings apart-lik 33.7 1.7E+02 0.0037 31.8 8.5 96 370-470 20-116 (361)
369 PF04564 U-box: U-box domain; 33.1 24 0.00053 28.7 1.4 34 275-310 38-71 (73)
370 PF10915 DUF2709: Protein of u 31.5 37 0.0008 32.9 2.4 37 276-321 87-123 (238)
371 KOG4739 Uncharacterized protei 31.5 17 0.00036 36.7 0.2 39 287-329 15-55 (233)
372 PF14225 MOR2-PAG1_C: Cell mor 31.1 6.2E+02 0.013 26.2 15.6 160 460-637 64-240 (262)
373 cd08324 CARD_NOD1_CARD4 Caspas 30.8 2.4E+02 0.0052 23.8 6.8 54 51-106 3-59 (85)
374 PF07800 DUF1644: Protein of u 30.8 23 0.00051 33.4 1.0 25 275-300 1-25 (162)
375 cd00730 rubredoxin Rubredoxin; 29.7 25 0.00053 26.6 0.8 13 272-284 30-42 (50)
376 smart00638 LPD_N Lipoprotein N 29.5 9.2E+02 0.02 27.8 15.8 205 414-649 311-540 (574)
377 KOG1788 Uncharacterized conser 29.3 9.2E+02 0.02 30.2 13.4 56 380-440 476-531 (2799)
378 PHA02862 5L protein; Provision 28.8 49 0.0011 30.8 2.7 45 278-323 4-54 (156)
379 PHA02825 LAP/PHD finger-like p 28.8 57 0.0012 30.9 3.1 47 276-323 8-60 (162)
380 PF14446 Prok-RING_1: Prokaryo 28.7 46 0.00099 25.6 2.1 26 277-302 6-35 (54)
381 PF10363 DUF2435: Protein of u 28.5 1.5E+02 0.0032 25.5 5.5 70 462-534 5-74 (92)
382 cd03565 VHS_Tom1 VHS domain fa 28.3 3.2E+02 0.0068 25.4 8.1 77 370-447 37-115 (141)
383 cd08329 CARD_BIRC2_BIRC3 Caspa 28.3 1.4E+02 0.0031 25.7 5.3 59 49-109 9-68 (94)
384 PF03207 OspD: Borrelia outer 28.3 5.2E+02 0.011 24.5 11.8 135 26-190 86-220 (254)
385 KOG1020 Sister chromatid cohes 28.3 7.7E+02 0.017 32.0 13.1 108 370-494 815-925 (1692)
386 PF10272 Tmpp129: Putative tra 28.0 43 0.00092 36.3 2.5 33 293-325 305-354 (358)
387 PF05883 Baculo_RING: Baculovi 27.9 40 0.00087 31.0 1.9 44 276-320 26-78 (134)
388 KOG2137 Protein kinase [Signal 27.4 3.6E+02 0.0078 31.8 9.8 131 371-516 389-521 (700)
389 PLN03076 ARF guanine nucleotid 27.3 9.8E+02 0.021 32.0 14.6 170 391-569 1111-1296(1780)
390 PF06012 DUF908: Domain of Unk 27.1 2.2E+02 0.0048 30.5 7.8 76 477-552 238-324 (329)
391 KOG0883 Cyclophilin type, U bo 26.7 32 0.00069 37.0 1.2 66 274-339 99-173 (518)
392 PF00301 Rubredoxin: Rubredoxi 26.3 28 0.00061 26.0 0.6 13 272-284 30-42 (47)
393 KOG3899 Uncharacterized conser 25.4 34 0.00075 35.3 1.2 29 297-325 328-368 (381)
394 PF06160 EzrA: Septation ring 25.1 1E+03 0.022 27.6 13.3 46 114-159 189-234 (560)
395 KOG2199 Signal transducing ada 24.6 6.1E+02 0.013 27.9 10.1 89 563-654 29-118 (462)
396 PF08216 CTNNBL: Catenin-beta- 24.6 1E+02 0.0022 27.4 3.8 45 386-435 60-104 (108)
397 KOG0915 Uncharacterized conser 24.3 1.7E+03 0.037 29.1 18.8 176 386-571 971-1159(1702)
398 PF07814 WAPL: Wings apart-lik 24.2 3.2E+02 0.007 29.6 8.6 92 462-554 23-116 (361)
399 PLN02638 cellulose synthase A 23.7 57 0.0012 40.1 2.8 46 277-322 18-70 (1079)
400 PHA03096 p28-like protein; Pro 22.7 49 0.0011 34.7 1.7 42 278-319 180-231 (284)
401 COG5537 IRR1 Cohesin [Cell div 22.6 7.7E+02 0.017 28.7 10.9 131 385-532 288-422 (740)
402 PF14663 RasGEF_N_2: Rapamycin 22.5 1.2E+02 0.0027 27.0 4.1 39 504-542 9-47 (115)
403 PRK06424 transcription factor; 22.4 2.6E+02 0.0056 26.2 6.3 62 145-208 74-139 (144)
404 PLN02436 cellulose synthase A 22.3 65 0.0014 39.6 2.8 46 277-322 37-89 (1094)
405 PF12830 Nipped-B_C: Sister ch 22.0 2.6E+02 0.0056 27.2 6.6 65 583-654 10-74 (187)
406 PF13811 DUF4186: Domain of un 21.9 57 0.0012 28.9 1.7 44 288-341 64-110 (111)
407 PF01726 LexA_DNA_bind: LexA D 21.6 2.7E+02 0.0058 22.2 5.4 32 188-222 21-52 (65)
408 KOG4718 Non-SMC (structural ma 21.4 54 0.0012 32.4 1.6 44 277-321 182-226 (235)
409 PF03854 zf-P11: P-11 zinc fin 21.4 40 0.00086 25.1 0.5 32 291-323 16-47 (50)
410 KOG3579 Predicted E3 ubiquitin 21.3 1E+02 0.0022 32.0 3.5 66 273-339 265-339 (352)
411 PF08580 KAR9: Yeast cortical 21.1 1.2E+03 0.025 27.9 12.8 69 56-130 4-75 (683)
412 KOG0314 Predicted E3 ubiquitin 21.1 46 0.00099 37.0 1.2 66 271-338 214-283 (448)
413 PF08506 Cse1: Cse1; InterPro 21.0 7.3E+02 0.016 27.1 10.5 159 443-605 195-370 (370)
414 KOG2199 Signal transducing ada 20.9 5.3E+02 0.011 28.3 8.8 75 369-447 43-118 (462)
415 PLN02915 cellulose synthase A 20.8 70 0.0015 39.3 2.7 46 277-322 16-68 (1044)
416 COG5098 Chromosome condensatio 20.8 3.4E+02 0.0075 32.0 7.8 111 416-533 301-416 (1128)
417 PF04499 SAPS: SIT4 phosphatas 20.5 9.1E+02 0.02 27.4 11.4 80 406-489 54-147 (475)
418 cd00197 VHS_ENTH_ANTH VHS, ENT 20.3 5.8E+02 0.013 22.3 8.1 75 370-445 36-113 (115)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=5.1e-26 Score=277.88 Aligned_cols=278 Identities=20% Similarity=0.209 Sum_probs=237.6
Q ss_pred hhhhHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 369 TKMTASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
..+.+..|++.|.++ .+++.++.|+..|+.+++.+++||..|++ .|+||.|+.+|.++ +..+|++|+++|.||+
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg----~~~vk~nAaaaL~nLS 86 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG----TLGAKVNAAAVLGVLC 86 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC----CHHHHHHHHHHHHHHh
Confidence 345678899999865 26789999999999999999999999997 79999999999998 9999999999999999
Q ss_pred cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---cchhhHHhhhcccHHHHHHhhcCCCh---hHH
Q 048793 447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV---HAHRKTLGRKTRVVKGLMDLVKGGPT---SSK 520 (683)
Q Consensus 447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~---~~~~~~i~~~~G~i~~Lv~lL~~~~~---~~~ 520 (683)
.+++++..|+.. |+|++|+++|++| ++++|++|+++|++|+.+ +.++..|+...|+||+|+.+|++++. ..+
T Consensus 87 ~~e~nk~~Iv~~-GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 87 KEEDLRVKVLLG-GCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred cCHHHHHHHHHc-CChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 999999999987 9999999999999 799999999999999987 45666766558999999999998753 244
Q ss_pred HHHHHHHHHhcCCcchhHH-HHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HHH---HHHcCchHHHHHHHhcCC
Q 048793 521 RDALVAILNLAGDRETVGR-LVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TAI---VAAYNTIKKLCILLREGS 594 (683)
Q Consensus 521 ~~A~~aL~nLs~~~~n~~~-iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e~---~~~~g~v~~Lv~lL~~~s 594 (683)
+.|+.+|+|||.+++|+.+ ++++|+|+.|+++|.++ +.....|+.+|.+++.+ .+. +.+.|++|.|+++|++++
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~ 244 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC
Confidence 6778999999999999865 58999999999999864 44578888888766533 433 345699999999998754
Q ss_pred -hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCC---------HHHHHHHHHHHHHHHh
Q 048793 595 -DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT---------ARARRKAAALLRILRR 654 (683)
Q Consensus 595 -~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~---------~~~k~kA~~lL~~l~~ 654 (683)
+.+|++|+++|.+||.++ ...+..+.+.|+++.|+.++.+.+ ...++.|.|.|.++.+
T Consensus 245 ~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 245 EVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred ChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 589999999999999864 345667888999999999987654 3459999999999877
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=5.6e-26 Score=277.57 Aligned_cols=285 Identities=18% Similarity=0.197 Sum_probs=240.0
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
.+|+++.|+++|+++ +...|..|++.|++++..+++++..|+++|+||.|+.+|.++ +..+|++|+++|.|++.+
T Consensus 444 ~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~----~~~iqeeAawAL~NLa~~ 518 (2102)
T PLN03200 444 GREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG----SQKAKEDSATVLWNLCCH 518 (2102)
T ss_pred HcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC
Confidence 678999999999998 999999999999999999988999999999999999999999 999999999999999998
Q ss_pred chhHHHHh-cccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc----------------------------------
Q 048793 449 EANKTRIM-ETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA---------------------------------- 493 (683)
Q Consensus 449 ~~~k~~I~-~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~---------------------------------- 493 (683)
+++++.++ .. |+|++|+++|+++ +.+.++.|+++|++|+...+
T Consensus 519 ~~qir~iV~~a-GAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 519 SEDIRACVESA-GAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred cHHHHHHHHHC-CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 77766666 55 9999999999999 79999999999999952111
Q ss_pred ----------------------------------------------hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 494 ----------------------------------------------HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 494 ----------------------------------------------~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
++..++. .|+|++|+.+|.+++.+.++.|+++|
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~-agaIpPLV~LLss~~~~v~keAA~AL 675 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT-DEIINPCIKLLTNNTEAVATQSARAL 675 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCChHHHHHHHHHH
Confidence 1122233 56777777777777777778888999
Q ss_pred HHhcC--CcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHH---cCchHHHHHHHhcCChHHHHHH
Q 048793 528 LNLAG--DRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAA---YNTIKKLCILLREGSDTSRESA 601 (683)
Q Consensus 528 ~nLs~--~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~---~g~v~~Lv~lL~~~s~~~ke~A 601 (683)
.||.. +++|+..++++|+|++|+++|.+. .+..+.|+.+|.+++...++..+ .|+++.|+++|++|++++|++|
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~A 755 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNA 755 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHH
Confidence 99985 445778889999999999999864 45688889998888877766543 4789999999999999999999
Q ss_pred HHHHHHHHhcCCch-HHHHHHhcCCcHHHHHHHhhcCCHHHHHH--HHHHHHHHHhhhccccc
Q 048793 602 AATLVTICRKGGSE-MVADIAAVPGIERVIWELMESGTARARRK--AAALLRILRRWAAGLDA 661 (683)
Q Consensus 602 ~~aL~~L~~~~~~~-~~~~~~~~~G~~~~L~~Ll~~~~~~~k~k--A~~lL~~l~~~~~~~~~ 661 (683)
+++|++||++.+.. .....+...|.+..|+.++...+.+.... |...|.+|.+...+..+
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~ 818 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANF 818 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCC
Confidence 99999999987743 35566788999999999999988777765 88999999887666554
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7e-25 Score=237.29 Aligned_cols=278 Identities=16% Similarity=0.211 Sum_probs=236.3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
.|.|+.+|..|..+.++..|.+|+|+|.++|.++.+.-..++++|++|.++.+|.++ +..+++.|+++|.|++.+.
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~----~~~v~eQavWALgNIagds 183 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP----SADVREQAVWALGNIAGDS 183 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC----cHHHHHHHHHHHhccccCC
Confidence 389999999998764799999999999999999999999999999999999999999 9999999999999999886
Q ss_pred hh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793 450 AN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528 (683)
Q Consensus 450 ~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
.. |..+... |++++|..++..........+++|+|.|||.+......+.....++|.|..+|.+.++.+..+|+|||.
T Consensus 184 ~~~Rd~vl~~-g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls 262 (514)
T KOG0166|consen 184 PDCRDYVLSC-GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALS 262 (514)
T ss_pred hHHHHHHHhh-cchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55 5555565 999999999987744478899999999999988666665555789999999999999999999999999
Q ss_pred HhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC-CcHHHH---HHcCchHHHHHHHh-cCChHHHHHH
Q 048793 529 NLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG-GLTAIV---AAYNTIKKLCILLR-EGSDTSRESA 601 (683)
Q Consensus 529 nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~-~~~e~~---~~~g~v~~Lv~lL~-~~s~~~ke~A 601 (683)
+|+.+. +....++++|+++.||++|... ......||..+.++. |+.+.. ...|.++.|..++. +.....|+.|
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA 342 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA 342 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence 999765 5667778999999999999854 334567777777755 444433 33488999999997 4455688999
Q ss_pred HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
+|++.||+.+.. ...+.+...|++|.|+.+++++..+.|+.|+|++.++..
T Consensus 343 cW~iSNItAG~~--~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 343 CWTISNITAGNQ--EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHHhhcCCH--HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 999999999543 345557788999999999999999999999999998865
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.3e-23 Score=211.30 Aligned_cols=272 Identities=22% Similarity=0.289 Sum_probs=235.9
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
+...|+..+..+ ..+.|+.++++|.+|+..+ +||..|+..|++.+|.++-++. |..+|.++..+|.|+....+|
T Consensus 127 Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltrLaksk----dirvqrnatgaLlnmThs~En 200 (550)
T KOG4224|consen 127 GLDLLILQMMTD-GVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTRLAKSK----DIRVQRNATGALLNMTHSREN 200 (550)
T ss_pred ChHHHHHHhcCC-CcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHhhcccc----hhhHHHHHHHHHHHhhhhhhh
Confidence 444555555555 6889999999999999985 5999999999999999988888 999999999999999999999
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc--cHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR--VVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G--~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
|+.++.+ |++|.||.+++++ +..++..++.++.+++.+..+|..+++ +| .|+.||.+..+++++++-.|..||.|
T Consensus 201 Rr~LV~a-G~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 201 RRVLVHA-GGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhcc-CCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhh
Confidence 9999998 9999999999999 799999999999999999999999988 77 99999999999999999999999999
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHH---HHHcCCcHHHHHHcCchHHHHHHHhcCCh-HHHHHHHHH
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEA---VVKRGGLTAIVAAYNTIKKLCILLREGSD-TSRESAAAT 604 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~---L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~-~~ke~A~~a 604 (683)
|+.+.+-...++++|.+|.++++|.+. -......++. ++....+.-.+.+.|.+.+||.+|+-+.. +.|-+|+.+
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvst 357 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVST 357 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence 999999999999999999999999854 2223333333 44444556667777999999999987654 599999999
Q ss_pred HHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 605 LVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 605 L~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
||+|+..+. ....++.+.|++|.|.+|+.+|.-.+|..-...+..|.-
T Consensus 358 LrnLAasse--~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 358 LRNLAASSE--HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred HHHHhhhhh--hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 999998543 335568899999999999999999999988888888765
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.4e-23 Score=207.70 Aligned_cols=274 Identities=14% Similarity=0.180 Sum_probs=241.0
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..|+...+.++-++. +..+|++|.++|.+++... +||+.++.+|++|.||.+|+++ |..+|..+.+++.|++.+
T Consensus 165 ~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll~s~----d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLLKSG----DLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhhccC----ChhHHHHHHHHhhhhhhh
Confidence 345666677755566 8899999999999998755 6999999999999999999999 999999999999999999
Q ss_pred chhHHHHhcccC--cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 449 EANKTRIMETEG--ALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 449 ~~~k~~I~~~~G--~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
..+|+.++++ | .++.||.++..| ++.++-.|.-+|.+|+...++...|++ +|.+|.+|++|+++.-......+.+
T Consensus 239 ~~~Rk~Laqa-ep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaC 315 (550)
T KOG4224|consen 239 RRARKILAQA-EPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVAC 315 (550)
T ss_pred HHHHHHHHhc-ccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHH
Confidence 9999988876 6 999999999999 799999999999999999999999999 9999999999988766666778899
Q ss_pred HHHhcCCcchhHHHHhcCchHHHHHHhcc--CchhHHHHHHHHHHcCCcH----HHHHHcCchHHHHHHHhcCChHHHHH
Q 048793 527 ILNLAGDRETVGRLVERGIVEIVAEAMDV--LPEESVTILEAVVKRGGLT----AIVAAYNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 527 L~nLs~~~~n~~~iv~aG~V~~Lv~lL~~--~~~~~~~aL~~L~~l~~~~----e~~~~~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
+.|++.++-|-..++++|.+.+||.+|.. +.+..-.|..+|.++++.. ..+...|+++.+..++..++-..++.
T Consensus 316 IrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 316 IRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred HhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence 99999999999999999999999999974 3446788888998888633 24455599999999999999999988
Q ss_pred HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
-.+++..|+-+..+ +..+.+.|+++.|+.+..+.+..++.+|+..|-+|+.
T Consensus 396 isac~a~Lal~d~~---k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 396 ISACIAQLALNDND---KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHHHHHhcccc---HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 88888888875544 4457789999999999999999999999999999876
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.88 E-value=4.4e-22 Score=200.52 Aligned_cols=282 Identities=16% Similarity=0.138 Sum_probs=229.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..|.||.+|+++...+..-.+.+|+|+|.+++.......+.++++|++|.++.+|.++ +.++++.++++|.|++.+
T Consensus 112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGD 187 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST----EDDVREQAVWALGNIAGD 187 (526)
T ss_pred hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc----hHHHHHHHHHHhccccCC
Confidence 4688999999996543566789999999999998886777788999999999999999 899999999999999998
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGA-TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~-~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
.+.++.++-..|++++++.+|.+.. +....+++.|+|.|||........-.....++|.|.+|+.+.++++..+|+|||
T Consensus 188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi 267 (526)
T COG5064 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI 267 (526)
T ss_pred chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 7665555533499999999998653 257889999999999987543322222246899999999999999999999999
Q ss_pred HHhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC-CcHH---HHHHcCchHHHHHHHhcCChHHHHHH
Q 048793 528 LNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG-GLTA---IVAAYNTIKKLCILLREGSDTSRESA 601 (683)
Q Consensus 528 ~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~-~~~e---~~~~~g~v~~Lv~lL~~~s~~~ke~A 601 (683)
.+|+..+. ....+++.|+.+.|+++|... ......|+....++. |+.. .+...|.++++..+|.+.....|..|
T Consensus 268 SYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEa 347 (526)
T COG5064 268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEA 347 (526)
T ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhh
Confidence 99999875 456668999999999999853 233555666665543 3322 34445889999999988888999999
Q ss_pred HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
+|++.++...+ ....+.+.+..++|+|+.++....-++|+.|+|.+.+.....
T Consensus 348 CWTiSNITAGn--teqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 348 CWTISNITAGN--TEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred heeecccccCC--HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999998854 334566788999999999999999999999999999887643
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=8.5e-21 Score=205.73 Aligned_cols=282 Identities=18% Similarity=0.173 Sum_probs=240.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCCh-hhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLP-NLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~-~~qe~A~~aL~nLs~ 447 (683)
..|+++.++.+|.++ +.++++.|+|+|.+++.+++..|..+.+.|++++|+.++... +. ....++.|+|.||+.
T Consensus 150 ~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~----~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS----DKLSMLRNATWTLSNLCR 224 (514)
T ss_pred cCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc----cchHHHHHHHHHHHHHHc
Confidence 568899999999999 999999999999999999999999999999999999999887 54 688899999999998
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
+.+-...+.....++|.|..+|.+. |.++...|+|+|.+|+.....+..++-..|+++.||.+|.+.+..++.-|++++
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 7532122111125899999999988 799999999999999998887877777799999999999999888999999999
Q ss_pred HHhcCCcchh-HHHHhcCchHHHHHHhccC-ch-hHHHHHHHHHHcC-CcHHHHHH---cCchHHHHHHHhcCChHHHHH
Q 048793 528 LNLAGDRETV-GRLVERGIVEIVAEAMDVL-PE-ESVTILEAVVKRG-GLTAIVAA---YNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 528 ~nLs~~~~n~-~~iv~aG~V~~Lv~lL~~~-~~-~~~~aL~~L~~l~-~~~e~~~~---~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
.|+..+.+.. ..++++|+++.|..+|... .+ ...+|.+++.+++ |+.+.+.+ .|-+|.|+.+|+++.-+.|..
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 9999887764 5558999999999999844 33 4677888888754 66655444 488999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793 601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA 657 (683)
Q Consensus 601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~ 657 (683)
|+|++.|++..+.. .+...+.+.|++++|..|+.-.+.+.-..+...|+++.+..+
T Consensus 384 AawaIsN~ts~g~~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 384 AAWAISNLTSSGTP-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHhhcccCCH-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999987664 456667889999999999977788888888888888887543
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.84 E-value=2.4e-21 Score=159.64 Aligned_cols=72 Identities=44% Similarity=0.898 Sum_probs=63.9
Q ss_pred CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcC
Q 048793 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR 344 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 344 (683)
||++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++...+++||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999988999999999999999999999999999999985
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.81 E-value=1.8e-18 Score=174.60 Aligned_cols=279 Identities=15% Similarity=0.134 Sum_probs=233.9
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..|+||.++.+|.++ +.+++..|+|+|.+++.+++..|..+.+.|++.+|+.+|.+.. .+..+..++.+.|.||+.+
T Consensus 155 d~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 155 DAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred eCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 568899999999999 8999999999999999999999999999999999999988761 1457889999999999975
Q ss_pred c---hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHH
Q 048793 449 E---ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALV 525 (683)
Q Consensus 449 ~---~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
. .+-..| . -++|.|.+++.+. ++++...|+|+|.+|+.....+..++-..|..+-||++|.+++..+..-|++
T Consensus 232 knP~P~w~~i-s--qalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 232 KNPPPDWSNI-S--QALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred CCCCCchHHH-H--HHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 2 222333 3 3699999999888 7999999999999999998888877776899999999999998889999999
Q ss_pred HHHHhcCCcch-hHHHHhcCchHHHHHHhccCc-hhHHHHHHHHHHc-CCcHHHHHH---cCchHHHHHHHhcCChHHHH
Q 048793 526 AILNLAGDRET-VGRLVERGIVEIVAEAMDVLP-EESVTILEAVVKR-GGLTAIVAA---YNTIKKLCILLREGSDTSRE 599 (683)
Q Consensus 526 aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~l-~~~~e~~~~---~g~v~~Lv~lL~~~s~~~ke 599 (683)
.+.|+....+. -+.++++|+++++-.+|++.. ....+|++.+.++ +|+.+.+++ ..-+|.|+++|....-.+|.
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 99999887665 455689999999999998643 3467778888775 577665544 36799999999998999999
Q ss_pred HHHHHHHHHHhcCCc-hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 600 SAAATLVTICRKGGS-EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~-~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.|+|++.+...++.. ..+...+...|++++|..++.-.+.++-+.|...+++.-+
T Consensus 388 EACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 388 EACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 999999998775543 2445667889999999999998888888888877777765
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.74 E-value=2.7e-16 Score=179.64 Aligned_cols=271 Identities=17% Similarity=0.184 Sum_probs=221.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
.++.|+.|++.|.++ +.+....+++.|.+|+.... |+..|++.|+||.|++++.++ +..++..++.+|+|||.+
T Consensus 288 ~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~----~~~l~~~aLrlL~NLSfd 361 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSE----NEDLVNVALRLLFNLSFD 361 (708)
T ss_pred hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCC----CHHHHHHHHHHHHHhCcC
Confidence 688999999999998 99999999999999998764 999999999999999999998 899999999999999999
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC-ChhHHHHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG-PTSSKRDALVAI 527 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL 527 (683)
.+.|..|+.. |+||.|+.+|.++ ..+..+..+|++||..+++|..+.. .++||.|+++|-++ +++...+++.++
T Consensus 362 ~~~R~~mV~~-GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~ 436 (708)
T PF05804_consen 362 PELRSQMVSL-GLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALL 436 (708)
T ss_pred HHHHHHHHHC-CCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHH
Confidence 9999999998 9999999999754 4667899999999999999999988 78999999987654 455677889999
Q ss_pred HHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHH--cCchHHHHHHHhcC-ChHHHHHHHHH
Q 048793 528 LNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAA--YNTIKKLCILLREG-SDTSRESAAAT 604 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~--~g~v~~Lv~lL~~~-s~~~ke~A~~a 604 (683)
.||+.++.|...+++.|+++.|++......+. -.+..+.+++.++..... .+.++.|+.++..+ +....-.+.++
T Consensus 437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~--lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGi 514 (708)
T PF05804_consen 437 INLALNKRNAQLMCEGNGLQSLMKRALKTRDP--LLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGI 514 (708)
T ss_pred HHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH--HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 99999999999999999999999987644332 123444555544321111 24567777777654 66677888888
Q ss_pred HHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHh
Q 048793 605 LVTICRKGGSEMVADIAAVPGIERVIWELMESG--TARARRKAAALLRILRR 654 (683)
Q Consensus 605 L~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~kA~~lL~~l~~ 654 (683)
|.||...+ .....++.+.+++|.|..++..| .+.+.-.+..++..+..
T Consensus 515 LaNL~~~~--ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 515 LANLTIPD--LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHhcccCC--cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 88887643 24677788899999999999887 34566666666666554
No 11
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.1e-16 Score=153.53 Aligned_cols=242 Identities=21% Similarity=0.281 Sum_probs=179.6
Q ss_pred HHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhcccchH--------HHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 048793 67 LFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKM--------WLLMQIETAANNFHELTIDLSTLLDIM 138 (683)
Q Consensus 67 ~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~skl--------yl~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (683)
..-++|.-+... .+--.+.+++.|. ++.|.....||+..-.| |++.++......|.+++..|.+++++.
T Consensus 32 ~y~raI~~nP~~-~~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 32 CYSRAICINPTV-ASYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHhcCCCc-chhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 445556555443 3445588999666 99999999999987666 999999999999999999999999998
Q ss_pred CCccccchhhHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHhhhhhcCCCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 048793 139 PLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIE 218 (683)
Q Consensus 139 p~~~~~~s~ev~e~v~~~~~q~~~~~~~~~~d~~~~~l~~~v~~~l~~~~~~~~~d~~~l~~~~~~l~~~~~~~~~~E~~ 218 (683)
-.+.+...++|-.++.+++++.|...+..|+ .++.++.+.+.+++...... .+.+.-+. | -+...++.-
T Consensus 109 r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri-~Q~~El~~yl~slie~~~~~------~~s~~~~N-~-~sde~~k~~-- 177 (284)
T KOG4642|consen 109 REQPFTFGDDIPKALRDAKKKRWEVSEEKRI-RQELELHSYLESLIEGDRER------ELSEWQEN-G-ESDEHLKTM-- 177 (284)
T ss_pred hcCCCCCcchHHHHHHHHHhCccchhHHHHH-HHHhhHHHHHHHHhccchhh------HHHHHHHc-C-CChHHHhhh--
Confidence 6666778899999999999998877555565 57778888887777542111 12111111 2 222222221
Q ss_pred HHHHHHhhhcccccHHHHHHHHHHHHhhhhhccccccCCcchHHHhhcccCCCCCCCcccccccccCCCCceecCCcccc
Q 048793 219 SLEEEIQNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTY 298 (683)
Q Consensus 219 ~l~~e~~~~~~~~~~~~~~~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CPis~~~m~dPv~~~~g~ty 298 (683)
+..|+.. .+.....|+.| |..++ +.+. ..++|+.++|.||+++|+|||++|+|.||
T Consensus 178 --q~~~~~~-~d~~~kel~el-----------f~~v~------e~rk----~rEvpd~lcgkIt~el~~~pvi~psgIty 233 (284)
T KOG4642|consen 178 --QVPIEQD-HDHTTKELSEL-----------FSKVD------EKRK----KREVPDYLCGKITLELMREPVITPSGITY 233 (284)
T ss_pred --cchhHHH-HHHHHHHHHHH-----------HHHHH------HHhc----cccccchhhhhhhHHhhcCCccCccccch
Confidence 1122111 13344455554 33222 2233 35799999999999999999999999999
Q ss_pred chhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCC
Q 048793 299 DRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIP 346 (683)
Q Consensus 299 ~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 346 (683)
+|..|.+++..-+...|+|+.+|+..+++||++|+..|..|...|+|.
T Consensus 234 ~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 234 DRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred hHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 999999999987779999999999999999999999999999999875
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.68 E-value=6.1e-15 Score=168.59 Aligned_cols=251 Identities=18% Similarity=0.196 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHH
Q 048793 386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGV 465 (683)
Q Consensus 386 ~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~L 465 (683)
....+.+...|.+++.+. .+...+.+.|+|+.|+++|.++ +.++...++++|.+||...+||..|++. |+|+.|
T Consensus 263 eqLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~----n~ellil~v~fLkkLSi~~ENK~~m~~~-giV~kL 336 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRE----NEELLILAVTFLKKLSIFKENKDEMAES-GIVEKL 336 (708)
T ss_pred HHHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHH
Confidence 445567788899998866 5888999999999999999998 9999999999999999999999999998 999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCc
Q 048793 466 IEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGI 545 (683)
Q Consensus 466 v~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~ 545 (683)
++++.++ +.+.+..+.++|+|||.+.+.|..++. .|+||.|+.+|.+++ .+..++.+|++||..+++|..+...++
T Consensus 337 ~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 337 LKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDC 412 (708)
T ss_pred HHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcch
Confidence 9999988 689999999999999999999999999 899999999998654 556799999999999999999999999
Q ss_pred hHHHHHHhccC--chhHHHHHHHHHHcCCcHHH---HHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 048793 546 VEIVAEAMDVL--PEESVTILEAVVKRGGLTAI---VAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADI 620 (683)
Q Consensus 546 V~~Lv~lL~~~--~~~~~~aL~~L~~l~~~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~ 620 (683)
||.|+++|..+ +......++.+.+++.++.. ..+.++++.|++...+..+ .....++.|++.|.+. .+..
T Consensus 413 Ip~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~--~k~~ 487 (708)
T PF05804_consen 413 IPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP--LKEL 487 (708)
T ss_pred HHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch--HHHH
Confidence 99999988654 22344567777777766543 3444778888887544332 2245688999998754 2333
Q ss_pred HhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 048793 621 AAVPGIERVIWELMESG-TARARRKAAALLRILR 653 (683)
Q Consensus 621 ~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL~~l~ 653 (683)
+ .+.+..|+.++..+ ++...-.+..+|.+|.
T Consensus 488 f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 488 F--VDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred H--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 3 35777777777776 5667777777777775
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.63 E-value=1.4e-14 Score=162.16 Aligned_cols=276 Identities=18% Similarity=0.156 Sum_probs=223.7
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC---
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL--- 448 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~--- 448 (683)
.++..+.+|.+. ++..|-+|+..|..++..+...|..+.+.|+||.||.+|.+. ..++|.+|+++|.||...
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~----~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR----NDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC----cHHHHHHHHHHHHhhhcccCC
Confidence 466778899988 999999999999999999999999999999999999999999 999999999999999854
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC-------------
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG------------- 515 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~------------- 515 (683)
++||..|.+. ++|+.++++|+...|.++++..+.+|+||++.|.-|..|.. .++..|.+-+-.+
T Consensus 309 ~~NKlai~~~-~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 309 DSNKLAIKEL-NGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred cccchhhhhc-CChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCccccc
Confidence 4689999998 99999999999744899999999999999999988888875 6788888765321
Q ss_pred -ChhHHHHHHHHHHHhcC-CcchhHHHHh-cCchHHHHHHhcc-------CchhHHHHHHHHHHcCCcHH---------H
Q 048793 516 -PTSSKRDALVAILNLAG-DRETVGRLVE-RGIVEIVAEAMDV-------LPEESVTILEAVVKRGGLTA---------I 576 (683)
Q Consensus 516 -~~~~~~~A~~aL~nLs~-~~~n~~~iv~-aG~V~~Lv~lL~~-------~~~~~~~aL~~L~~l~~~~e---------~ 576 (683)
+..+..++..+|.|++. ..+.+.+|-+ .|.|..|+..+.. +...++.|+++|.+++-.-+ .
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~ 465 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV 465 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence 13466899999999988 6788999977 5999999998861 23349999999988662211 0
Q ss_pred H-----------------------HH----------------cCc-----hHHHHHH----Hh-cCChHHHHHHHHHHHH
Q 048793 577 V-----------------------AA----------------YNT-----IKKLCIL----LR-EGSDTSRESAAATLVT 607 (683)
Q Consensus 577 ~-----------------------~~----------------~g~-----v~~Lv~l----L~-~~s~~~ke~A~~aL~~ 607 (683)
. .. ..+ -+.+++. |. ...+.+.|.++++|-+
T Consensus 466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN 545 (717)
T ss_pred hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence 0 00 001 1233332 32 4678899999999999
Q ss_pred HHhcCCc--h-HHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 608 ICRKGGS--E-MVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 608 L~~~~~~--~-~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
|+....- . ....++....+.+.|++|++.+++++.+-++.+|++|+.-
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 9986652 2 3344447888999999999999999999999999999884
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.60 E-value=3.7e-14 Score=163.87 Aligned_cols=289 Identities=20% Similarity=0.176 Sum_probs=226.0
Q ss_pred HHHhhhhHHHHHHHhccC-------CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCC--CCC------C
Q 048793 366 LEATKMTASFLINKLATS-------QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD--TAS------R 430 (683)
Q Consensus 366 i~~~~~~i~~Lv~~L~s~-------~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~--~~~------~ 430 (683)
++..+....++..+|... .+..-.+.|+..|..++.+ +++|..|-+.|++..+-.||.-. +.. .
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~ 363 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGE 363 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHH
Confidence 344455556666666543 1233445788888888765 56999999999999998877522 110 1
Q ss_pred ChhhHHHHHHHHHhcccCc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHH
Q 048793 431 LPNLQVNAVTTILNLSILE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGL 508 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~L 508 (683)
...++.+|.++|-||..++ .||..+-...|+|+.+|..|.+. ..+..+--+.+|+||+= .|.|-..+....|-|.+|
T Consensus 364 ~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL 442 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL 442 (2195)
T ss_pred HHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence 3468999999999999765 67877777669999999999987 57899999999999994 455655555558999999
Q ss_pred HHh-hcCCChhHHHHHHHHHHHhcCC-cchhHHHHh-cCchHHHHHHhccC-c----hhHHHHHHHHHHcC----CcH--
Q 048793 509 MDL-VKGGPTSSKRDALVAILNLAGD-RETVGRLVE-RGIVEIVAEAMDVL-P----EESVTILEAVVKRG----GLT-- 574 (683)
Q Consensus 509 v~l-L~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~-aG~V~~Lv~lL~~~-~----~~~~~aL~~L~~l~----~~~-- 574 (683)
+.. +.+......+..+.|||||+.| .+|+..|+. -|++..||.+|.-. + ...+.+=++|.+.+ .+.
T Consensus 443 a~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 443 AACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 975 5666667889999999999886 689999988 59999999999732 1 23667777776643 332
Q ss_pred -HHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793 575 -AIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR 653 (683)
Q Consensus 575 -e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
++......+..|+..|++.|-.+..|++++||||...++. -++++++.|+++.|..|+++.+..+-+-++..|++|-
T Consensus 523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~--DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPE--DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHH--HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 2334447788899999999999999999999999987764 3678999999999999999999999999999999998
Q ss_pred hhhcc
Q 048793 654 RWAAG 658 (683)
Q Consensus 654 ~~~~~ 658 (683)
.|+++
T Consensus 601 n~RPA 605 (2195)
T KOG2122|consen 601 NFRPA 605 (2195)
T ss_pred cCCch
Confidence 88755
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.60 E-value=8.4e-16 Score=123.24 Aligned_cols=63 Identities=52% Similarity=0.992 Sum_probs=60.0
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW 339 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 339 (683)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5889999999999999999999999999999987 67999999999999999999999999987
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2.5e-12 Score=130.60 Aligned_cols=273 Identities=15% Similarity=0.140 Sum_probs=214.1
Q ss_pred HHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 373 ASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 373 i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
...++.+|... .+.+.....+..++.-+-.++.||..+++.|+.|.+...|.... ...+...+.+++.-|..+++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g---k~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG---KTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC---ccHHHHHHHHHHHHhcCCCce
Confidence 34456666432 26777788888899888888899999999999999997666541 335677788899988776654
Q ss_pred H----------HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCCh-h--
Q 048793 452 K----------TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPT-S-- 518 (683)
Q Consensus 452 k----------~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~-~-- 518 (683)
| +.|++. |++..|++.|+.+.++.....++.+|..|+..++.+..|.+ .|++..|++++.+.+. .
T Consensus 224 RV~fg~ah~hAr~ia~e-~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r 301 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKE-GILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNR 301 (461)
T ss_pred eeecchhhHHHHHHHHh-hhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHH
Confidence 3 567776 88999999999988899999999999999999999999999 8999999999987442 2
Q ss_pred -HHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc---cCchhHHHHHHHHHHcC----CcHHHHHHcCchHHHHHHH
Q 048793 519 -SKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD---VLPEESVTILEAVVKRG----GLTAIVAAYNTIKKLCILL 590 (683)
Q Consensus 519 -~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~---~~~~~~~~aL~~L~~l~----~~~e~~~~~g~v~~Lv~lL 590 (683)
..+.++..|..|+.++.++..+|+.|+.+.++.++. +++..++.++++++.++ .+.....+.|+....+.-|
T Consensus 302 ~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 302 TLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHH
Confidence 447889999999999999999999999999999885 34556777777776655 3344555567788888888
Q ss_pred hcC--ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793 591 REG--SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR 653 (683)
Q Consensus 591 ~~~--s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
+.. ...++++|++++.||..++.+ .+..+...|+.. |+.......+....-|...||-|.
T Consensus 382 kahP~~a~vQrnac~~IRNiv~rs~~--~~~~~l~~GiE~-Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 382 KAHPVAAQVQRNACNMIRNIVVRSAE--NRTILLANGIEK-LIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhhhh--ccchHHhccHHH-HHHHHHhcCccHHHHHHHHHHhcC
Confidence 753 456889999999999987654 345555666655 555666666667777777787664
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2.1e-11 Score=123.91 Aligned_cols=262 Identities=16% Similarity=0.211 Sum_probs=204.8
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc-cCchhHHHHhcccCcHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS-ILEANKTRIMETEGALN 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs-~~~~~k~~I~~~~G~I~ 463 (683)
+.....+++.+|-.+...-+ .+.++-+...++.+|...+. +.++....+..+..-+ .|+.||+.+++. |+++
T Consensus 120 ~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~--~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~il~ 192 (461)
T KOG4199|consen 120 NESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVE--SEEVTLLTLQWLQKACIMHEVNRQLFMEL-KILE 192 (461)
T ss_pred chhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHH
Confidence 77788899999988876555 44566788889999876532 5566666666666655 578999999998 9999
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHhhcCcc----------hhhHHhhhcccHHHHHHhhcCC-ChhHHHHHHHHHHHhc
Q 048793 464 GVIEVLR-SGATWEAKGNAAATIFSLSGVHA----------HRKTLGRKTRVVKGLMDLVKGG-PTSSKRDALVAILNLA 531 (683)
Q Consensus 464 ~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~~~----------~~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs 531 (683)
.+...|. +| .....+.++++++.|...|+ +...|+. .|+...|++.+..+ ++.....+..+|..|+
T Consensus 193 Li~~~l~~~g-k~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 193 LILQVLNREG-KTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHcccC-ccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9997776 45 35677889999999987764 4566666 67899999999876 5778899999999999
Q ss_pred CCcchhHHHHhcCchHHHHHHhccCc-----hhHHHHHHHHHHcCCcHHH---HHHcCchHHHHHHHh--cCChHHHHHH
Q 048793 532 GDRETVGRLVERGIVEIVAEAMDVLP-----EESVTILEAVVKRGGLTAI---VAAYNTIKKLCILLR--EGSDTSRESA 601 (683)
Q Consensus 532 ~~~~n~~~iv~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~~~~e~---~~~~g~v~~Lv~lL~--~~s~~~ke~A 601 (683)
..++-+..++++|++..|+.++.+.. +.+..++..|..++|+... +...|+.+.++.++. ..+|.+-+.+
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999998632 2377899999999987655 455599999999875 3678889999
Q ss_pred HHHHHHHHhcCCchHHHHHHhcCCcHHHH-HHHhhcC-CHHHHHHHHHHHHHHHhhhc
Q 048793 602 AATLVTICRKGGSEMVADIAAVPGIERVI-WELMESG-TARARRKAAALLRILRRWAA 657 (683)
Q Consensus 602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L-~~Ll~~~-~~~~k~kA~~lL~~l~~~~~ 657 (683)
+.++.-||-..++.. +. +.+.|+-... ..|-.++ ...++++|++++|++-....
T Consensus 351 ~a~i~~l~LR~pdhs-a~-~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 351 MAIISILCLRSPDHS-AK-AIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHHHhcCcchH-HH-HHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999888743 34 4455555444 4555555 56799999999999976443
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.45 E-value=4.2e-12 Score=129.76 Aligned_cols=190 Identities=17% Similarity=0.205 Sum_probs=165.9
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
+....|+.+|+...|+..+..|+.++.+.+... .++..|.+.|+++.+..+|..+ ++.+++.|+.+|.|++.+.+
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p----~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDP----NPSVREKALNALNNLSVNDE 86 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCC----ChHHHHHHHHHHHhcCCChh
Confidence 456789999987658999999999999987755 6999999999999999999999 99999999999999999999
Q ss_pred hHHHHhcccCcHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 451 NKTRIMETEGALNGVIEVLRSG-ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~-~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
|+..|- ..++.+.+.+.+. .+.+.+..+.++|.+|+..++++..+. +.++.++.+|..|+...+..++++|.|
T Consensus 87 n~~~Ik---~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 NQEQIK---MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hHHHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 988773 2577777766543 356888999999999999998888874 479999999999999999999999999
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccC--chhHHHHHHHHHHcC
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVL--PEESVTILEAVVKRG 571 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~--~~~~~~aL~~L~~l~ 571 (683)
||.++.+...++.++++..++.++... .+....++..+.++.
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999753 455777888877764
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.38 E-value=3.4e-11 Score=135.30 Aligned_cols=280 Identities=17% Similarity=0.104 Sum_probs=206.5
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
.-+.|+.||.+|.+. +.+++..|+++|+||...+.. |+..|.+.|+||.|+.+|+... |.++++.+..+|+||+
T Consensus 273 qlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~---D~ev~e~iTg~LWNLS 348 (717)
T KOG1048|consen 273 QLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQ---DDEVRELITGILWNLS 348 (717)
T ss_pred HhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhc---chHHHHHHHHHHhccc
Confidence 357899999999999 999999999999999987765 9999999999999999999742 8999999999999999
Q ss_pred cCchhHHHHhcccCcHHHHHHHHhcCC-------------CHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhh
Q 048793 447 ILEANKTRIMETEGALNGVIEVLRSGA-------------TWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLV 512 (683)
Q Consensus 447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~-------------~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL 512 (683)
.+|.-|..|+.. ++..|..-+-... +.++..+++.+|.|++. ..+.+.++.+..|.|.+|+..+
T Consensus 349 S~D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~i 426 (717)
T KOG1048|consen 349 SNDALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSI 426 (717)
T ss_pred chhHHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHH
Confidence 998888888765 6777766553211 14566899999999987 6778999998889999998887
Q ss_pred cC------CChhHHHHHHHHHHHhcCCcc---------------------------------------------------
Q 048793 513 KG------GPTSSKRDALVAILNLAGDRE--------------------------------------------------- 535 (683)
Q Consensus 513 ~~------~~~~~~~~A~~aL~nLs~~~~--------------------------------------------------- 535 (683)
.+ -+....++++.+|.||+-.-+
T Consensus 427 q~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~ 506 (717)
T KOG1048|consen 427 QTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT 506 (717)
T ss_pred HHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence 52 234456777777777753211
Q ss_pred --------------------------------------------------hhHHH-HhcCchHHHHHHhccC-chhHHHH
Q 048793 536 --------------------------------------------------TVGRL-VERGIVEIVAEAMDVL-PEESVTI 563 (683)
Q Consensus 536 --------------------------------------------------n~~~i-v~aG~V~~Lv~lL~~~-~~~~~~a 563 (683)
-+..+ .+.-+.++|+++|..+ ...+..+
T Consensus 507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~ 586 (717)
T KOG1048|consen 507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSA 586 (717)
T ss_pred CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHH
Confidence 01112 2334556677777643 4446667
Q ss_pred HHHHHHcCCcHHHHHHcC--chHHHHHHHhcC------ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh
Q 048793 564 LEAVVKRGGLTAIVAAYN--TIKKLCILLREG------SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELME 635 (683)
Q Consensus 564 L~~L~~l~~~~e~~~~~g--~v~~Lv~lL~~~------s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~ 635 (683)
.++|.|++.+......+| +++.|++.|..+ +..+-..++.+|+++...+.. .... +.+.+.++.|+.|..
T Consensus 587 a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~-nAkd-l~~~~g~~kL~~I~~ 664 (717)
T KOG1048|consen 587 AGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVL-NAKD-LLEIKGIPKLRLISK 664 (717)
T ss_pred HHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHH-HHHH-HHhccChHHHHHHhc
Confidence 777777776665555553 578888887643 246667788888888865432 2333 556677777887766
Q ss_pred cC-CHHHHHHHHHHHHHHHhhh
Q 048793 636 SG-TARARRKAAALLRILRRWA 656 (683)
Q Consensus 636 ~~-~~~~k~kA~~lL~~l~~~~ 656 (683)
+. ++++-+.|+.+|..|-.+.
T Consensus 665 s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 665 SQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 65 6799999999998886644
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.31 E-value=2e-10 Score=117.57 Aligned_cols=224 Identities=12% Similarity=0.112 Sum_probs=175.9
Q ss_pred HHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 411 AEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 411 ~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
.+++-+..|+.+|+.. .|+.+++.|+.++.|.+..+.++..|.+. |+++.+..+|.++ ++.+++.|..+|.|++.
T Consensus 9 l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 9 LEAQELQKLLCLLEST---EDPFIQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDP-NPSVREKALNALNNLSV 83 (254)
T ss_pred cCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCC-ChHHHHHHHHHHHhcCC
Confidence 5677889999999965 28999999999999999999999999998 9999999999998 79999999999999999
Q ss_pred CcchhhHHhhhcccHHHHHHhhcCC--ChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc-hhHHHHHHHH
Q 048793 491 VHAHRKTLGRKTRVVKGLMDLVKGG--PTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP-EESVTILEAV 567 (683)
Q Consensus 491 ~~~~~~~i~~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L 567 (683)
..+|+..|-. .|+.+.+...+. +..++..++.+|.||+..++.+..+. +.++.++.+|..+. .....++.+|
T Consensus 84 ~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 84 NDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred ChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999998843 577777765544 46788899999999999888777764 47999999998764 4478999999
Q ss_pred HHcCCcHHHHHHc---CchHHHHHHHhcC-ChHHHHHHHHHHHHHHhcCCch------------HHHHHHhcCC-cHHHH
Q 048793 568 VKRGGLTAIVAAY---NTIKKLCILLREG-SDTSRESAAATLVTICRKGGSE------------MVADIAAVPG-IERVI 630 (683)
Q Consensus 568 ~~l~~~~e~~~~~---g~v~~Lv~lL~~~-s~~~ke~A~~aL~~L~~~~~~~------------~~~~~~~~~G-~~~~L 630 (683)
.+++.++....+. .+...++.++... +...-..+.....+|..+-..+ ..-.++.+.+ ..+.|
T Consensus 159 ~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l 238 (254)
T PF04826_consen 159 VNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL 238 (254)
T ss_pred HHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence 9999998865554 5677888888764 6677888999999996543321 1112233333 44555
Q ss_pred HHHhhcCCHHHHHH
Q 048793 631 WELMESGTARARRK 644 (683)
Q Consensus 631 ~~Ll~~~~~~~k~k 644 (683)
..|..+.++++|+|
T Consensus 239 ~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 239 QALANHPDPEVKEQ 252 (254)
T ss_pred HHHHcCCCHHHhhh
Confidence 56666666666665
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.27 E-value=1.9e-09 Score=121.89 Aligned_cols=276 Identities=13% Similarity=0.136 Sum_probs=210.2
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
....+.|...|.++ ++.++.-+++.|.+++.++......+.+.+.++.++..|.++ |..+...|+.+|.+++.++
T Consensus 76 ~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~----d~~Va~~A~~~L~~l~~~~ 150 (503)
T PF10508_consen 76 PQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP----DLSVAKAAIKALKKLASHP 150 (503)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC----cHHHHHHHHHHHHHHhCCc
Confidence 44567888999998 999999999999999988876677777899999999999999 9999999999999999988
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
.+...+... +.+..|..++.+. +...|..+..++.+++...+....++...|.++.++..|.+++.-++.+|+..|..
T Consensus 151 ~~~~~l~~~-~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~ 228 (503)
T PF10508_consen 151 EGLEQLFDS-NLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSE 228 (503)
T ss_pred hhHHHHhCc-chHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 888778887 7799999999886 57889999999999987766555555558999999999998777789999999999
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccC---c-hh---HHHHHHHHHHcCC-cH-HHHHHc-CchHHHHHHHhcCChHHHH
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVL---P-EE---SVTILEAVVKRGG-LT-AIVAAY-NTIKKLCILLREGSDTSRE 599 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~---~-~~---~~~aL~~L~~l~~-~~-e~~~~~-g~v~~Lv~lL~~~s~~~ke 599 (683)
|+..+.+...+.+.|+++.|+.++.+. + -. .-..+....+++. .+ ...... ..+..+..++.+.++..+.
T Consensus 229 La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~ 308 (503)
T PF10508_consen 229 LAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIRE 308 (503)
T ss_pred HHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence 999999999999999999999999742 2 11 1112222233332 22 222211 1233444455678889999
Q ss_pred HHHHHHHHHHhcCCchHHHHH-HhcCCc----HHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 600 SAAATLVTICRKGGSEMVADI-AAVPGI----ERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~~~~~~~-~~~~G~----~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.|..+|..+|+..... ..+ ....+. +........+++..+|-++-..|..+-.
T Consensus 309 ~A~dtlg~igst~~G~--~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGK--QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHHHhCCHHHH--HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 9999999999754322 222 233334 3444455667888888888888877743
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.16 E-value=4.3e-10 Score=101.21 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=104.9
Q ss_pred HHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048793 409 CIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFS 487 (683)
Q Consensus 409 ~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~ 487 (683)
.+++.|+++.|+.+|.++ +..+++.++.+|.+++.+ ++.+..+... |+++.++.+|.++ ++.++..|+++|.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~-~~~v~~~a~~~L~~ 75 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSE-DEEVVKAALWALRN 75 (120)
T ss_pred hHHHcCChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 356889999999999998 899999999999999987 6778888887 9999999999987 79999999999999
Q ss_pred hhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 488 LSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 488 Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
|+.... .+..+.. .|+++.|++++.+++...++.|+++|.||+.
T Consensus 76 l~~~~~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 76 LAAGPEDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HccCcHHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 998875 4555555 8999999999999889999999999999973
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.4e-09 Score=111.39 Aligned_cols=257 Identities=17% Similarity=0.196 Sum_probs=185.4
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
.+..|.-||+.|..+ +.+...-...-|..|+...+ |+..+.+.|.|..|+++.... +++++...+..|+|||.+
T Consensus 302 rkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~e-NK~~M~~~~iveKL~klfp~~----h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDE-NKIVMEQNGIVEKLLKLFPIQ----HPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhcc-chHHHHhccHHHHHHHhcCCC----CHHHHHHHHHHhhhcccc
Confidence 356788899999888 88888888889999988775 999999999999999999999 999999999999999999
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAI 527 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL 527 (683)
..++.+++.. |.+|.++.+|.+. .-+..|...|+.+|.+++.+..+.. ..+|+.|++.+-.+. .++-.+.+..-
T Consensus 376 ~glr~KMv~~-GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~c 450 (791)
T KOG1222|consen 376 SGLRPKMVNG-GLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALC 450 (791)
T ss_pred ccccHHHhhc-cchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHH
Confidence 9999999998 9999999999754 3456799999999999999999988 799999998776554 34444444444
Q ss_pred HHhcCCcchhHHHHhcCchHHHHHHhc-----------------cC---------------------c-hhHHHHHHHHH
Q 048793 528 LNLAGDRETVGRLVERGIVEIVAEAMD-----------------VL---------------------P-EESVTILEAVV 568 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~-----------------~~---------------------~-~~~~~aL~~L~ 568 (683)
.|||.+..|.+.+++..++..|++.-. ++ . +-..+|+++|+
T Consensus 451 iNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 451 INLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred HHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 689999888888888767776655321 00 0 11445555555
Q ss_pred HcCC----cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC
Q 048793 569 KRGG----LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG 637 (683)
Q Consensus 569 ~l~~----~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~ 637 (683)
++.- .....+...-+|-+-..|+.|-.. -+-...+...+.....+.....++...|+++.|++|++.+
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~e-ddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADE-DDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccc-hhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhh
Confidence 5442 122333344455555555543221 1122222222322222334456677789999999998875
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.7e-09 Score=124.61 Aligned_cols=223 Identities=12% Similarity=0.061 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chh-HHHHhcccCcH
Q 048793 386 MEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EAN-KTRIMETEGAL 462 (683)
Q Consensus 386 ~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~-k~~I~~~~G~I 462 (683)
...+++|..+|.||+..+..|+..+.. .|++..+|..|.+. ..+++.-.+.+|.||+=. +.| |+.+-+. |-+
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~----peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsV 439 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA----PEELLQVYASVLRNLSWRADSNMKKVLRET-GSV 439 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC----hHHHHHHHHHHHHhccccccccHHHHHHhh-hhH
Confidence 467899999999999999888887765 59999999999987 667777788899999843 445 4444455 888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCC----ChhHHHHHHHHHHHhcCC----
Q 048793 463 NGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGG----PTSSKRDALVAILNLAGD---- 533 (683)
Q Consensus 463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~---- 533 (683)
..|+..--...........+.+||||+.+ -+||..|....|++..||.+|.-. .-.+.+.|-.+|.|.+.+
T Consensus 440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~ 519 (2195)
T KOG2122|consen 440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC 519 (2195)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence 88888654332456778899999999976 579999999999999999999654 235778999999998764
Q ss_pred cchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-c---HHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHH
Q 048793 534 RETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-L---TAIVAAYNTIKKLCILLREGSDTSRESAAATLVTI 608 (683)
Q Consensus 534 ~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~---~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L 608 (683)
..-|+.+.+.+++..|++.|.+. -..+-++++.|+|+.. + .+.+-..|+++.|..++.+.+...-+-++.+|.||
T Consensus 520 E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNL 599 (2195)
T KOG2122|consen 520 EDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNL 599 (2195)
T ss_pred chHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 44577778899999999999854 2347788888888763 2 34556669999999999999988889999999999
Q ss_pred HhcCC
Q 048793 609 CRKGG 613 (683)
Q Consensus 609 ~~~~~ 613 (683)
-.+-+
T Consensus 600 ln~RP 604 (2195)
T KOG2122|consen 600 LNFRP 604 (2195)
T ss_pred hcCCc
Confidence 87654
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.07 E-value=2.1e-09 Score=96.64 Aligned_cols=115 Identities=22% Similarity=0.309 Sum_probs=104.0
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..|.++.|+++|.++ +...+..+++.|.+++..+++++..+.+.|++|.|+.+|.+. ++.++..|+++|.||+.+
T Consensus 5 ~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 5 QAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE----DEEVVKAALWALRNLAAG 79 (120)
T ss_pred HcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC----CHHHHHHHHHHHHHHccC
Confidence 457899999999998 899999999999999999888999999999999999999998 999999999999999987
Q ss_pred ch-hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 449 EA-NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 449 ~~-~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
.. .+..+... |+++.++++|..+ +.+.++.++++|.+|+.
T Consensus 80 ~~~~~~~~~~~-g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEA-GGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHC-CChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 64 45556666 9999999999988 79999999999999863
No 26
>PRK09687 putative lyase; Provisional
Probab=98.92 E-value=1.1e-07 Score=99.19 Aligned_cols=221 Identities=11% Similarity=0.040 Sum_probs=155.2
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHh-hCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARH-LGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~l-L~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
+.+.+..++.+. ++..|..|++.|..+..... . ..-++|.|..+ +... ++.++..|+.+|.++.....
T Consensus 55 ~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~----d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 55 VFRLAIELCSSK-NPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDK----SACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCC----CHHHHHHHHHHHhccccccc
Confidence 445566777777 88888888888888743221 1 22467778776 5566 88899999999988854322
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
.. . +.+++.+...+.+. +..+|..++.+|..+ +. ..+++.|+.+|.+.++.++..|+.+|.++
T Consensus 124 ~~----~-~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~----------~~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 124 LY----S-PKIVEQSQITAFDK-STNVRFAVAFALSVI----------ND-EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred cc----c-hHHHHHHHHHhhCC-CHHHHHHHHHHHhcc----------CC-HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 11 1 13456666777766 688998888888543 33 56899999999988889999999999988
Q ss_pred cCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793 531 AGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC 609 (683)
Q Consensus 531 s~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~ 609 (683)
.... ..+++.|+.+|.+. .++...|+..|..+.. . .+++.|++.|..+. .+..|+.+|..+.
T Consensus 187 ~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 187 KYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-K------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred CCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-h------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 3322 25677889999764 4557777777766432 1 35888999988765 4445666654443
Q ss_pred hcCCchHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHH
Q 048793 610 RKGGSEMVADIAAVPGIERVIWELME-SGTARARRKAAALLR 650 (683)
Q Consensus 610 ~~~~~~~~~~~~~~~G~~~~L~~Ll~-~~~~~~k~kA~~lL~ 650 (683)
. .-+++.|..++. +++.+++++|.+.|+
T Consensus 250 ~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 250 D-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred C-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 3 134788888886 789999999998875
No 27
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.92 E-value=6.4e-10 Score=106.61 Aligned_cols=61 Identities=26% Similarity=0.514 Sum_probs=53.1
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhc---------------CCCCCCCCCCccCCCCCcchHH
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES---------------GHNTCPKTGQTLAHTNLVTNTA 331 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~---------------g~~~cP~~~~~l~~~~l~pn~~ 331 (683)
....++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.++....++|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 456688999999999999999999999999999999852 2358999999999888888753
No 28
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.89 E-value=9.8e-10 Score=79.97 Aligned_cols=39 Identities=28% Similarity=0.721 Sum_probs=31.0
Q ss_pred ccccccCCCCceecCCccccchhhHHHHHhcCC---CCCCCC
Q 048793 279 CPISLELMRNPVVVATGQTYDRQSISLWIESGH---NTCPKT 317 (683)
Q Consensus 279 CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~---~~cP~~ 317 (683)
|||++++|+|||+++|||+|+++||++|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997532 468875
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=3e-09 Score=114.11 Aligned_cols=69 Identities=16% Similarity=0.343 Sum_probs=62.5
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCR 341 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~ 341 (683)
.+...|+||||++++.+||+++|||+||..||..|+.. ...||.|+.++....+.+|..|.++++.|..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 46678999999999999999999999999999999976 4589999999888889999999999998853
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.81 E-value=7.1e-07 Score=101.11 Aligned_cols=272 Identities=16% Similarity=0.181 Sum_probs=202.8
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHH
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRI 455 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I 455 (683)
+...|... +.+....++..|..+-.... -... ..+..+.|...|.++ ++.++..++..|.++..+.+....+
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~-~~~l--~~~~~~~L~~gL~h~----~~~Vr~l~l~~l~~~~~~~~~~~~~ 114 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALS-PDSL--LPQYQPFLQRGLTHP----SPKVRRLALKQLGRIARHSEGAAQL 114 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 77778877 77777888888888776543 2222 467889999999998 9999999999999999887776665
Q ss_pred hcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcc
Q 048793 456 METEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRE 535 (683)
Q Consensus 456 ~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
+...+.++.++..|..+ +.++...|+.+|.+|+....+...+.. .+.+..|..++...+..++-.+..++.+++...+
T Consensus 115 ~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred hcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 55459999999999988 799999999999999999888877777 6789999999988777788889999999987655
Q ss_pred -hhHHHHhcCchHHHHHHhccCch-hHHHHHHHHHHcCCcHHHH---HHcCchHHHHHHHhcCChHHHHH------HHHH
Q 048793 536 -TVGRLVERGIVEIVAEAMDVLPE-ESVTILEAVVKRGGLTAIV---AAYNTIKKLCILLREGSDTSRES------AAAT 604 (683)
Q Consensus 536 -n~~~iv~aG~V~~Lv~lL~~~~~-~~~~aL~~L~~l~~~~e~~---~~~g~v~~Lv~lL~~~s~~~ke~------A~~a 604 (683)
....+.+.|.++.++..|.++.- ....++.+|..++..+.+. ...|.++.|..++...+...+-. ....
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 55666778999999999986332 2778888888887766654 44588999999987532211111 1233
Q ss_pred HHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhcccc
Q 048793 605 LVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGLD 660 (683)
Q Consensus 605 L~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~~~~ 660 (683)
..+++..++.... .. -..++..|..+..++++..+.-|-..+..+....+|..
T Consensus 273 ~g~la~~~~~~v~-~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 273 FGNLARVSPQEVL-EL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred HHHHHhcChHHHH-HH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 3445554332221 11 13456667777888888888888888888877655543
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.80 E-value=5.5e-07 Score=94.87 Aligned_cols=264 Identities=13% Similarity=0.103 Sum_probs=184.5
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCC---hhhHHHHHHHHHhccc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRL---PNLQVNAVTTILNLSI 447 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d---~~~qe~A~~aL~nLs~ 447 (683)
+.++.|++...|+ +.++-.+..++|.++|.++.++|..+.+.|+-..++++|+..+..++ .+...-+...|.|...
T Consensus 87 ~~le~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4677788888888 88999999999999999999999999999998888888886532223 2445566778888876
Q ss_pred C-chhHHHHhcccCcHHHHHHHHhcCC-CH--------------------------------------------HHHHHH
Q 048793 448 L-EANKTRIMETEGALNGVIEVLRSGA-TW--------------------------------------------EAKGNA 481 (683)
Q Consensus 448 ~-~~~k~~I~~~~G~I~~Lv~lL~~~~-~~--------------------------------------------~~~~~A 481 (683)
+ ++.+.++++. |+++.|+.++.=+. +. ..++..
T Consensus 166 ~~~~l~aq~~~~-gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 166 DSRELRAQVADA-GVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CcHHHHHHHHhc-ccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 5 5668888888 99997775553211 11 122222
Q ss_pred HHHHHHhhcCcchhhHHhhhcc--------------------------------------------------cHHHHHHh
Q 048793 482 AATIFSLSGVHAHRKTLGRKTR--------------------------------------------------VVKGLMDL 511 (683)
Q Consensus 482 a~~L~~Ls~~~~~~~~i~~~~G--------------------------------------------------~i~~Lv~l 511 (683)
..+|...+.++..+..+++ .| .+..++..
T Consensus 245 feila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 3333333333333333333 33 34444455
Q ss_pred hcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC------chhHHHHHHHHHHcC---CcHHHHHHcCc
Q 048793 512 VKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL------PEESVTILEAVVKRG---GLTAIVAAYNT 582 (683)
Q Consensus 512 L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~------~~~~~~aL~~L~~l~---~~~e~~~~~g~ 582 (683)
+.+.+......+.-+|.|++..+.++..+++.|.+..|+++|..+ -+..-.++++|.++. .+.......|.
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv 403 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV 403 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence 555566667788899999999999999999999999999998631 123666788887765 34455555688
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCC
Q 048793 583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT 638 (683)
Q Consensus 583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~ 638 (683)
++++...++..+|.++..-.+.|..+-. +.+....++.+....+..|+.-.++.+
T Consensus 404 teaIL~~lk~~~ppv~fkllgTlrM~~d-~qe~~a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 404 TEAILLQLKLASPPVTFKLLGTLRMIRD-SQEYIACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHh-chHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence 8999999999999999888888766544 333355666666666666776666654
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.7e-06 Score=89.67 Aligned_cols=282 Identities=16% Similarity=0.138 Sum_probs=194.6
Q ss_pred chhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHH
Q 048793 361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVT 440 (683)
Q Consensus 361 ~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~ 440 (683)
+++..++ .-+.|+.|+++.... .++.+...+.-+.+++.++. +|..++..|.+|.|+.+|.+. . -...|+.
T Consensus 336 eNK~~M~-~~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d----~--~~~iA~~ 406 (791)
T KOG1222|consen 336 ENKIVME-QNGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSD----T--KHGIALN 406 (791)
T ss_pred cchHHHH-hccHHHHHHHhcCCC-CHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCc----c--cchhhhh
Confidence 3444455 467899999999888 89999999999999998775 999999999999999999987 2 2345888
Q ss_pred HHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc-----------------
Q 048793 441 TILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR----------------- 503 (683)
Q Consensus 441 aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G----------------- 503 (683)
.|..+|.+++.|....-. .+|+.+.+.+-++.+.++-....+.-.|||....|...+++..|
T Consensus 407 ~lYh~S~dD~~K~MfayT-dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLm 485 (791)
T KOG1222|consen 407 MLYHLSCDDDAKAMFAYT-DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLM 485 (791)
T ss_pred hhhhhccCcHHHHHHHHH-HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHH
Confidence 999999999999988887 89999999877664444444444444588877766666555222
Q ss_pred -------------------cHHHHHHhhcCCCh-hHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhccCchh---
Q 048793 504 -------------------VVKGLMDLVKGGPT-SSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDVLPEE--- 559 (683)
Q Consensus 504 -------------------~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~~~~--- 559 (683)
-|.-|...+++.+. ...-.++.+|.||...+-.-..+++ ...||.+-..|.++...
T Consensus 486 K~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddL 565 (791)
T KOG1222|consen 486 KVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDL 565 (791)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhh
Confidence 23333444444332 3445688888888887666666654 68899998888765333
Q ss_pred HHHHHHHHHHcCCc---HHHHHHcCchHHHHHHHhcC--ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHh
Q 048793 560 SVTILEAVVKRGGL---TAIVAAYNTIKKLCILLREG--SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELM 634 (683)
Q Consensus 560 ~~~aL~~L~~l~~~---~e~~~~~g~v~~Lv~lL~~~--s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll 634 (683)
+...+-.+...+.. .......+.+++|+.+|+.. +++..-.-.-+...+..|. ...+-++++...-..|+.|.
T Consensus 566 vL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLM 643 (791)
T KOG1222|consen 566 VLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLM 643 (791)
T ss_pred hhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHH
Confidence 33333323222221 11223346799999999753 4444444555566666652 23345566677788899999
Q ss_pred hcCCHHHHHHHHHHHHHHHh
Q 048793 635 ESGTARARRKAAALLRILRR 654 (683)
Q Consensus 635 ~~~~~~~k~kA~~lL~~l~~ 654 (683)
++.+..+|+-.-..|-.+..
T Consensus 644 HDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 644 HDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred hcccHHHHHHHHHHHHHHHH
Confidence 99999988877777766654
No 33
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.74 E-value=9.5e-07 Score=93.14 Aligned_cols=277 Identities=11% Similarity=0.082 Sum_probs=194.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCC-CCCC---CChhhHHHHHHHHHhcccCch
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGP-DTAS---RLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s-~~~~---~d~~~qe~A~~aL~nLs~~~~ 450 (683)
.++++|.+...++. ...+.++..-+.+++..+-.+++.|.+..++.+++. .... ++...-..++....-|..+++
T Consensus 227 ~l~~ll~~~v~~d~-~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe 305 (604)
T KOG4500|consen 227 MLLQLLPSMVREDI-DEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE 305 (604)
T ss_pred HHHHHHHHhhccch-hhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch
Confidence 36666765523333 344444444444566688899999999999999986 2100 112233344444444556677
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-----CChhHHHHHHH
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-----GPTSSKRDALV 525 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-----~~~~~~~~A~~ 525 (683)
.-..+...|.++..++..+.+. +......++-+|.|++..|+++..++. .|.+..|+.+|.. |+.+.+..++.
T Consensus 306 SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 306 SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 7666766634899999999988 688899999999999999999999999 8999999999843 45678899999
Q ss_pred HHHHhcCCcchhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHHHcCCcHH-HHHHcCchHHHHHHHhc----CC-hHHH
Q 048793 526 AILNLAGDRETVGRLVERGIVEIVAEAMDV-LPEESVTILEAVVKRGGLTA-IVAAYNTIKKLCILLRE----GS-DTSR 598 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~~l~~~~e-~~~~~g~v~~Lv~lL~~----~s-~~~k 598 (683)
||.||...-.|+..++.+|++++++..+.. .+..+-.-++.|..+-...+ ...+.+.-+.++.-|.. .+ ..+.
T Consensus 384 ALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~ 463 (604)
T KOG4500|consen 384 ALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVA 463 (604)
T ss_pred HHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhh
Confidence 999999999999999999999999998874 46678888888876554444 44555665666665542 11 1234
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
-...+.|..+-+|+....+...+-..|+++.++.+.....-..+..|.-.|-.+..
T Consensus 464 gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 464 GESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred hhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 45566777777775544344445567778888888777766666666555555444
No 34
>PRK09687 putative lyase; Provisional
Probab=98.72 E-value=1.2e-06 Score=91.48 Aligned_cols=228 Identities=9% Similarity=0.007 Sum_probs=163.9
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
+-.++.|...|.+. +..++..|++.|..+-. ..+++.+..++.+. ++.++..|+++|..|-..+
T Consensus 22 ~~~~~~L~~~L~d~-d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~----d~~vR~~A~~aLg~lg~~~ 85 (280)
T PRK09687 22 KLNDDELFRLLDDH-NSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSK----NPIERDIGADILSQLGMAK 85 (280)
T ss_pred hccHHHHHHHHhCC-CHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCc
Confidence 44577899999988 99999999999987632 34677888999998 9999999999999985432
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
.. .. -+++.|..++.+..++.+|..|+.+|.++....... . ..+++.|...+.+++..++..|+.+|..
T Consensus 86 ~~-----~~-~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~D~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 86 RC-----QD-NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAFDKSTNVRFAVAFALSV 154 (280)
T ss_pred cc-----hH-HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhhCCCHHHHHHHHHHHhc
Confidence 21 11 467888877554447999999999999986433211 1 2356778888888899999999999965
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHH
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTI 608 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L 608 (683)
+. ...+++.|+.+|.+. ..+...|+..|..+..... ..++.|+.++...+..++..|+++|..+
T Consensus 155 ~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-----~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 155 IN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-----DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred cC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 53 233789999999864 4556677777766532111 3467899999989999999999987553
Q ss_pred HhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 609 CRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 609 ~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
-. ..+++.|+..+.++. ++..|...|..+..
T Consensus 220 ~~-------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 220 KD-------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred CC-------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 21 134677777777766 34455555554433
No 35
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.70 E-value=5e-09 Score=81.36 Aligned_cols=44 Identities=32% Similarity=0.826 Sum_probs=31.7
Q ss_pred CcccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCCCC
Q 048793 275 ADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPKTG 318 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~~~ 318 (683)
-.++||||++.|+|||.. .|||+|+|.+|.+|+.. +...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999975 99999999999999954 456799965
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.68 E-value=7.1e-06 Score=89.61 Aligned_cols=269 Identities=13% Similarity=0.081 Sum_probs=188.8
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR 454 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~ 454 (683)
.++.+|.++ |.-.+..|...|..+...+..+.......-....|...|.+. .+...+.-|+.+|.+|...++.|..
T Consensus 105 ~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R~~ 180 (429)
T cd00256 105 PFFNLLNRQ-DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYRFA 180 (429)
T ss_pred HHHHHHcCC-chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHHHH
Confidence 355678777 888999999999988766543322111112334555666654 1467788889999999999999998
Q ss_pred HhcccCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHHHHhcC
Q 048793 455 IMETEGALNGVIEVLRSGA-TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAILNLAG 532 (683)
Q Consensus 455 I~~~~G~I~~Lv~lL~~~~-~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~ 532 (683)
+.+. ++++.|+.+|+... +.+..-.++-+++-||..++....... .|.|+.|+++++... ..+.+-++.+|.||..
T Consensus 181 f~~~-~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 181 FVLA-DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHc-cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 9887 78999999998743 568889999999999999887777665 899999999998754 5588999999999987
Q ss_pred Cc-------chhHHHHhcCchHHHHHHhcc---CchhHHHHHHHHH--------HcCCcHH-------------------
Q 048793 533 DR-------ETVGRLVERGIVEIVAEAMDV---LPEESVTILEAVV--------KRGGLTA------------------- 575 (683)
Q Consensus 533 ~~-------~n~~~iv~aG~V~~Lv~lL~~---~~~~~~~aL~~L~--------~l~~~~e------------------- 575 (683)
.+ .....|++.|+.+.+-.+... +++. ...+..|. .+++-.+
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se 337 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE 337 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc
Confidence 43 234567778876655444432 2222 11111111 1221111
Q ss_pred -----HHHHc-----CchHHHHHHHh-cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHH
Q 048793 576 -----IVAAY-----NTIKKLCILLR-EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRK 644 (683)
Q Consensus 576 -----~~~~~-----g~v~~Lv~lL~-~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~k 644 (683)
..... ..+..|+++|. +.++.+..-|+.=+..++++.+. .+.++...|+=..+..|+.+.++++|..
T Consensus 338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 11111 12456777774 34666777788878888887764 3556777899999999999999999999
Q ss_pred HHHHHHHH
Q 048793 645 AAALLRIL 652 (683)
Q Consensus 645 A~~lL~~l 652 (683)
|-..++.|
T Consensus 416 AL~avQkl 423 (429)
T cd00256 416 ALLAVQKL 423 (429)
T ss_pred HHHHHHHH
Confidence 98888765
No 37
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.7e-05 Score=89.35 Aligned_cols=278 Identities=16% Similarity=0.180 Sum_probs=202.1
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
..+|+.|+..+.++.-.+.|+.|+..|..+++ .+|..++..| +++|+..|.... .|+++...++.+++++..++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~--~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDY--MDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhcc--CCHHHHHHHHHHHHHHHhcC
Confidence 45789999999876457899999999999987 4788777654 688999998652 38999999999999997665
Q ss_pred h-------hH----------HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc--chhhHHhhhcccHHHHHH
Q 048793 450 A-------NK----------TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH--AHRKTLGRKTRVVKGLMD 510 (683)
Q Consensus 450 ~-------~k----------~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~--~~~~~i~~~~G~i~~Lv~ 510 (683)
+ .+ ..+...++.|..++..+..- +-.+|..+...|.+|-... +.+..+...+-+|..||.
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 3 22 23445568899999999887 7899999999999987654 466666666889999999
Q ss_pred hhcCCChhHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhccCc-----hhHHHHHHHHHH----cCCcHHHHHHc
Q 048793 511 LVKGGPTSSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDVLP-----EESVTILEAVVK----RGGLTAIVAAY 580 (683)
Q Consensus 511 lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~----l~~~~e~~~~~ 580 (683)
+|.+....++-+|+-.|..|..+..+.+++|. .++...|..++.++. -+++.||..|.+ ..++.....+-
T Consensus 174 lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~ 253 (970)
T KOG0946|consen 174 LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG 253 (970)
T ss_pred HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence 99987778999999999999999999988877 689999999997432 348888888866 34566677777
Q ss_pred CchHHHHHHHhc---CCh----H--HH----HHHHHHHHHHHhcCCc----hHHHHHHhcCCcHHHHHHHhhcC--CHHH
Q 048793 581 NTIKKLCILLRE---GSD----T--SR----ESAAATLVTICRKGGS----EMVADIAAVPGIERVIWELMESG--TARA 641 (683)
Q Consensus 581 g~v~~Lv~lL~~---~s~----~--~k----e~A~~aL~~L~~~~~~----~~~~~~~~~~G~~~~L~~Ll~~~--~~~~ 641 (683)
+-+|.|.++|.. ++. . -| -.|..++..+..-+.. ...+.++...+++..|..++.+. ..++
T Consensus 254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI 333 (970)
T KOG0946|consen 254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI 333 (970)
T ss_pred ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence 889999988752 221 1 11 1233333333332221 23335677778888887765554 4456
Q ss_pred HHHHHHHHHHHHh
Q 048793 642 RRKAAALLRILRR 654 (683)
Q Consensus 642 k~kA~~lL~~l~~ 654 (683)
+..+.-.+...-+
T Consensus 334 ltesiitvAevVR 346 (970)
T KOG0946|consen 334 LTESIITVAEVVR 346 (970)
T ss_pred HHHHHHHHHHHHH
Confidence 6555554444433
No 38
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.54 E-value=5.1e-08 Score=69.97 Aligned_cols=38 Identities=34% Similarity=0.848 Sum_probs=33.3
Q ss_pred ccccccCCCCc-eecCCccccchhhHHHHHhcCCCCCCCC
Q 048793 279 CPISLELMRNP-VVVATGQTYDRQSISLWIESGHNTCPKT 317 (683)
Q Consensus 279 CPis~~~m~dP-v~~~~g~ty~r~~I~~w~~~g~~~cP~~ 317 (683)
|||+++.++|| ++++|||+|++.+|++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 6799975
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.52 E-value=1.5e-06 Score=92.58 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=138.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK 452 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k 452 (683)
...+++.+.++ |...+..|+..|..+...++...... ..+.++.++..|.+...+.+.+.+..|+.+|.+|...+.+|
T Consensus 107 ~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 107 YSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence 45577788888 99999999999999988776433332 25677888888776422225677899999999999999999
Q ss_pred HHHhcccCcHHHHHHHH------hcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHH
Q 048793 453 TRIMETEGALNGVIEVL------RSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALV 525 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL------~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~ 525 (683)
..+.+. |+++.++.+| .++.+.+..-+++-++|-||..++....+.. .+.|+.|+++++... ..+.+-++.
T Consensus 185 ~~f~~~-~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 185 QVFWKS-NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHTH-HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHHhc-CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHH
Confidence 999997 9999999999 4444588889999999999999999999988 789999999998754 568899999
Q ss_pred HHHHhcCCcc--hhHHHHhcCchHHHHHHhc
Q 048793 526 AILNLAGDRE--TVGRLVERGIVEIVAEAMD 554 (683)
Q Consensus 526 aL~nLs~~~~--n~~~iv~aG~V~~Lv~lL~ 554 (683)
+|.||..... +...|+.+|+.+.+-.+..
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 9999998776 8999999998887777665
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.51 E-value=1.4e-05 Score=97.04 Aligned_cols=228 Identities=15% Similarity=0.072 Sum_probs=132.9
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
...++.|+..|.+. ++.+|..|+..|..+. ..+++|.|+.+|+++ +..++..|+.+|..+....
T Consensus 620 ~~~~~~L~~~L~D~-d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~----d~~VR~~Aa~aL~~l~~~~ 683 (897)
T PRK13800 620 APSVAELAPYLADP-DPGVRRTAVAVLTETT-----------PPGFGPALVAALGDG----AAAVRRAAAEGLRELVEVL 683 (897)
T ss_pred chhHHHHHHHhcCC-CHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhcc
Confidence 44678899999988 9999999999987653 245788899999888 8899999988887663110
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-----------c--hh----hHHhhhcccHHHHHHhh
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-----------A--HR----KTLGRKTRVVKGLMDLV 512 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-----------~--~~----~~i~~~~G~i~~Lv~lL 512 (683)
...+.|...|.+. ++.+|..|+.+|..+...+ + .| ..++. .+..+.|..++
T Consensus 684 ----------~~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~~~~l~~~l 751 (897)
T PRK13800 684 ----------PPAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDDVESVAGAA 751 (897)
T ss_pred ----------CchHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccCcHHHHHHh
Confidence 1123445555554 4566666655555442100 0 00 00000 11123344444
Q ss_pred cCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHh
Q 048793 513 KGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLR 591 (683)
Q Consensus 513 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~ 591 (683)
.++++.++..++.+|..+... +.+.++.|..++.+. +.....|+..|..+...... +..+...|.
T Consensus 752 ~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~------~~~l~~aL~ 817 (897)
T PRK13800 752 TDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDD------VAAATAALR 817 (897)
T ss_pred cCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchh------HHHHHHHhc
Confidence 444444555555555444321 112356777777643 34466666666665432211 234556666
Q ss_pred cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793 592 EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652 (683)
Q Consensus 592 ~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l 652 (683)
..++.+|..|+.+|..+.. ...++.|..++.+.+..+|+.|...|..+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 6677777777777654422 12246677777777777777777777665
No 41
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.48 E-value=4.8e-06 Score=88.75 Aligned_cols=213 Identities=15% Similarity=0.122 Sum_probs=148.9
Q ss_pred HHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHHh------CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793 373 ASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAEA------GAIALLARHLGPDTASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 373 i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~~------G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL 445 (683)
+..++.+|+.- .+.+.....+..+..+..+++.....+... ....++++++.++ |..++..|+.+|..|
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~----D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN----DSFIQLKAAFILTSL 132 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S----SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC----CHHHHHHHHHHHHHH
Confidence 33444544432 378999999999999999888666666652 2577888899988 999999999999998
Q ss_pred ccCchhHHHHhcccCcHHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh-----cCC--
Q 048793 446 SILEANKTRIMETEGALNGVIEVLRSGA---TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV-----KGG-- 515 (683)
Q Consensus 446 s~~~~~k~~I~~~~G~I~~Lv~lL~~~~---~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL-----~~~-- 515 (683)
......+..-... +.++.++..|++.. +.+....|+.+|.+|...+++|..+.+ .|+++.|+.+| .++
T Consensus 133 l~~~~~~~~~~~~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 133 LSQGPKRSEKLVK-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HTSTTT--HHHHH-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------
T ss_pred HHcCCccccchHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCC
Confidence 7664443333223 67888999988532 245568899999999999999999999 89999999999 222
Q ss_pred ChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chh-HHHHHHHHHHcCCcHH--HHHH--cCchHHHHHH
Q 048793 516 PTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEE-SVTILEAVVKRGGLTA--IVAA--YNTIKKLCIL 589 (683)
Q Consensus 516 ~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~-~~~aL~~L~~l~~~~e--~~~~--~g~v~~Lv~l 589 (683)
+.+..-.++-++|-|+.+++....+.+.+.|+.|++++... .+. +.-++++|.|+..... .... .+++..++..
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~ 290 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQN 290 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHH
Confidence 25677999999999999999999999999999999999854 343 6668999988764432 2222 1345555555
Q ss_pred Hh
Q 048793 590 LR 591 (683)
Q Consensus 590 L~ 591 (683)
|.
T Consensus 291 L~ 292 (312)
T PF03224_consen 291 LS 292 (312)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 42
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.39 E-value=1.5e-07 Score=68.53 Aligned_cols=36 Identities=25% Similarity=0.658 Sum_probs=23.3
Q ss_pred ccccccCCCC----ceecCCccccchhhHHHHHhcC---CCCCC
Q 048793 279 CPISLELMRN----PVVVATGQTYDRQSISLWIESG---HNTCP 315 (683)
Q Consensus 279 CPis~~~m~d----Pv~~~~g~ty~r~~I~~w~~~g---~~~cP 315 (683)
||||.+ |.+ |++++|||+|++.||++|...+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 34676
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.38 E-value=3.8e-05 Score=93.23 Aligned_cols=228 Identities=15% Similarity=0.108 Sum_probs=149.8
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL- 448 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~- 448 (683)
...++.|+..|+.+ +..++..|+..|..+....+ ..+.|...|.+. |+.++..|+.+|..+...
T Consensus 651 ~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~----d~~VR~~A~~aL~~~~~~~ 715 (897)
T PRK13800 651 PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSP----DPVVRAAALDVLRALRAGD 715 (897)
T ss_pred hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCC----CHHHHHHHHHHHHhhccCC
Confidence 45678899999887 89999999988877643211 124555566655 666666666665544210
Q ss_pred ----------ch--hHH----HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh
Q 048793 449 ----------EA--NKT----RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV 512 (683)
Q Consensus 449 ----------~~--~k~----~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL 512 (683)
++ .|. .+... +..+.|...|... +.++|..++.+|..+... . .+.++.|..++
T Consensus 716 ~~~l~~~L~D~d~~VR~~Av~aL~~~-~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll 784 (897)
T PRK13800 716 AALFAAALGDPDHRVRIEAVRALVSV-DDVESVAGAATDE-NREVRIAVAKGLATLGAG--------G-APAGDAVRALT 784 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc-cCcHHHHHHhcCC-CHHHHHHHHHHHHHhccc--------c-chhHHHHHHHh
Confidence 00 010 00011 2233445555555 566666666666655332 1 33578999999
Q ss_pred cCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHh
Q 048793 513 KGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLR 591 (683)
Q Consensus 513 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~ 591 (683)
+++++.++..|+.+|.++...+ .+++.|+..|.+. ..+...|+..|..+... ..++.|+.+|.
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-------~a~~~L~~~L~ 848 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAAD-------VAVPALVEALT 848 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-------chHHHHHHHhc
Confidence 9999999999999998874321 1235577778754 34567788888765432 24689999999
Q ss_pred cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793 592 EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI 651 (683)
Q Consensus 592 ~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~ 651 (683)
..+..+|..|+.+|..+ .++. ...+.|...+.+.+..+|+.|...|+.
T Consensus 849 D~~~~VR~~A~~aL~~~---~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 849 DPHLDVRKAAVLALTRW---PGDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CCCHHHHHHHHHHHhcc---CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999999998775 1121 235667788999999999999998863
No 44
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.27 E-value=6.4e-07 Score=64.95 Aligned_cols=39 Identities=38% Similarity=0.923 Sum_probs=35.9
Q ss_pred ccccccCCCCce-ecCCccccchhhHHHHHh-cCCCCCCCC
Q 048793 279 CPISLELMRNPV-VVATGQTYDRQSISLWIE-SGHNTCPKT 317 (683)
Q Consensus 279 CPis~~~m~dPv-~~~~g~ty~r~~I~~w~~-~g~~~cP~~ 317 (683)
|||+++.+.+|+ +++|||+|++.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 556789976
No 45
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.7e-05 Score=79.75 Aligned_cols=177 Identities=19% Similarity=0.185 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcH
Q 048793 384 QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGAL 462 (683)
Q Consensus 384 ~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I 462 (683)
.+.+.+..|+..|..++.+- +|..-+...|+.++|+..|.+. +..+++.|+++|..++.+ +..+..+++. |++
T Consensus 95 ~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~----~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L 168 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENS----DAELRELAARVIGTAVQNNPKSQEQVIEL-GAL 168 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccH
Confidence 38899999999999998765 4889999999999999999999 999999999999999876 5678888898 999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCC--ChhHHHHHHHHHHHhcCCc-chhH
Q 048793 463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGG--PTSSKRDALVAILNLAGDR-ETVG 538 (683)
Q Consensus 463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~-~n~~ 538 (683)
+.|+..|.+..+..++..|..++.+|-.+.. ....+-. .++...|.+++.++ +.+.+..++..|.+|...+ ....
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999977678888999999999988765 4444445 67799999999885 4667888999999987644 3444
Q ss_pred HHHhcCchHHHHHHhccC-chhHHHHHHHH
Q 048793 539 RLVERGIVEIVAEAMDVL-PEESVTILEAV 567 (683)
Q Consensus 539 ~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L 567 (683)
.+-..|....++.+.... .+.-+.++..+
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~ 277 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTAL 277 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHH
Confidence 444566666666666532 23344444443
No 46
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5e-07 Score=88.39 Aligned_cols=57 Identities=23% Similarity=0.525 Sum_probs=51.6
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhc--CCCCCCCCCCccCCCCCcchHH
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKTGQTLAHTNLVTNTA 331 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~--g~~~cP~~~~~l~~~~l~pn~~ 331 (683)
..|.|-||++.-+|||++.|||-||=-||-+|++. +...||+|+...+.+.++|-+.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 67999999999999999999999999999999974 4567999999999999999754
No 47
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.25 E-value=4.4e-07 Score=92.22 Aligned_cols=64 Identities=20% Similarity=0.424 Sum_probs=58.5
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW 339 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 339 (683)
+-++|-||++.|.-|+++|||||||--||.+++.. ++.||.|..+.+...|+-|..|.++|+.|
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSL 85 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHH
Confidence 45799999999999999999999999999999985 78999999999999999999888888765
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.20 E-value=6.1e-07 Score=69.88 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=32.8
Q ss_pred cccccccccCCCCcee-cCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHH
Q 048793 276 DFRCPISLELMRNPVV-VATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLI 336 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~-~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i 336 (683)
-++|++|.++|++||. ..|.|.||..||.+.+.. -||+|..|....++.-|..|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 4689999999999995 599999999999876543 499999998888999999888775
No 49
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.19 E-value=1.3e-06 Score=87.87 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=41.3
Q ss_pred CCCcccccccccCCCCc--------eecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 273 VPADFRCPISLELMRNP--------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dP--------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
...+..||||++.+.++ ++++|||+||+.||.+|+.. +.+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 34567899999987764 56799999999999999975 779999998764
No 50
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.18 E-value=1.3e-06 Score=66.28 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=40.8
Q ss_pred CcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccC
Q 048793 275 ADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
+++.|+|+++-..++++.||||. |+..|+.+|+. +...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999999 4789999998764
No 51
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.3e-06 Score=88.01 Aligned_cols=56 Identities=21% Similarity=0.526 Sum_probs=48.6
Q ss_pred CCCC-CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCc
Q 048793 271 ANVP-ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV 327 (683)
Q Consensus 271 ~~~p-~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~ 327 (683)
..+| ..+.|-||++-+.||--+||||.||=+||..|+.+ ..-||.||+++++.+++
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3444 56999999999999999999999999999999986 45699999998877654
No 52
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.15 E-value=9.9e-05 Score=84.31 Aligned_cols=252 Identities=14% Similarity=0.145 Sum_probs=128.7
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
.+..+.+.|.++ ++..+..|++.|.+++. + .+++ -.+|.+..+|.++ ++.++..|+.++..+......
T Consensus 80 ~~n~l~kdl~~~-n~~~~~lAL~~l~~i~~--~----~~~~-~l~~~v~~ll~~~----~~~VRk~A~~~l~~i~~~~p~ 147 (526)
T PF01602_consen 80 IINSLQKDLNSP-NPYIRGLALRTLSNIRT--P----EMAE-PLIPDVIKLLSDP----SPYVRKKAALALLKIYRKDPD 147 (526)
T ss_dssp HHHHHHHHHCSS-SHHHHHHHHHHHHHH-S--H----HHHH-HHHHHHHHHHHSS----SHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHHhhcCC-CHHHHHHHHhhhhhhcc--c----chhh-HHHHHHHHHhcCC----chHHHHHHHHHHHHHhccCHH
Confidence 455566667666 77777777777776652 1 1111 2466667777776 777777777777776533211
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHh-hcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSL-SGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~L-s~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
.+.. +.++.+..+|... ++.++.+|+.++..+ ...+.....+ ...+..|.+++...++-.+..++..|..+
T Consensus 148 ---~~~~-~~~~~l~~lL~d~-~~~V~~~a~~~l~~i~~~~~~~~~~~---~~~~~~L~~~l~~~~~~~q~~il~~l~~~ 219 (526)
T PF01602_consen 148 ---LVED-ELIPKLKQLLSDK-DPSVVSAALSLLSEIKCNDDSYKSLI---PKLIRILCQLLSDPDPWLQIKILRLLRRY 219 (526)
T ss_dssp ---CHHG-GHHHHHHHHTTHS-SHHHHHHHHHHHHHHHCTHHHHTTHH---HHHHHHHHHHHTCCSHHHHHHHHHHHTTS
T ss_pred ---HHHH-HHHHHHhhhccCC-cchhHHHHHHHHHHHccCcchhhhhH---HHHHHHhhhcccccchHHHHHHHHHHHhc
Confidence 1121 1466666777655 577777777777777 1111112111 23455555555555555666666666666
Q ss_pred cCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793 531 AGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC 609 (683)
Q Consensus 531 s~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~ 609 (683)
+........- ...++.+..++.+. +...-+|+..+..+...... ....++.|.+++.+.++..+-.++..|..++
T Consensus 220 ~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~--~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 220 APMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPEL--LQKAINPLIKLLSSSDPNVRYIALDSLSQLA 295 (526)
T ss_dssp TSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHH--HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred ccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHH--HHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence 5543322100 33445555555432 23345555555555544441 1123555666666555556666666666665
Q ss_pred hcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 610 RKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 610 ~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.... ..+. .....+..+..+.+..+|.+|..+|..+..
T Consensus 296 ~~~~-----~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 296 QSNP-----PAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp CHCH-----HHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred cccc-----hhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 5431 1111 112222223335555566665555555544
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.8e-05 Score=85.72 Aligned_cols=150 Identities=13% Similarity=0.048 Sum_probs=123.6
Q ss_pred cccHHHHHHhhcCC-ChhHHHHHHHHHHHhcC-CcchhHHHHhcCchHHHHHHhcc--CchhHHHHHHHHHHcCC-cHHH
Q 048793 502 TRVVKGLMDLVKGG-PTSSKRDALVAILNLAG-DRETVGRLVERGIVEIVAEAMDV--LPEESVTILEAVVKRGG-LTAI 576 (683)
Q Consensus 502 ~G~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~V~~Lv~lL~~--~~~~~~~aL~~L~~l~~-~~e~ 576 (683)
.-.||.||.+|++. +.++.-.|++||.+||. .++....+|+.|+||.|++-|.. .-+.++.+|.+|-.++. ++..
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence 56899999999876 57899999999999998 68899999999999999998863 34668889998888774 4567
Q ss_pred HHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 577 VAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 577 ~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
+...|++.+.+..+.--|-.+|+.|.++-.|+|..-..+...-++ .++|+|..|++..+.+.-+.++..+..+..
T Consensus 290 iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~---ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 290 ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM---EALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH---HHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 777899999999888888999999999999999865543333333 569999999999998888877776665555
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00013 Score=76.52 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=140.9
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHH
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLM 509 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv 509 (683)
+.+-++.|+.-|..+..+-+|...+... |++.+++..|+++ +.+.|+.|+++|..++.+ +.....+.+ .|+.+.|+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~-ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~Ll 172 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISL-GGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKLL 172 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhc-cCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHHH
Confidence 7788888998888888888999999998 9999999999998 799999999999999876 457777777 89999999
Q ss_pred HhhcCCCh-hHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhccC-ch--hHHHHHHHHHHcCC----cHHHHHHc
Q 048793 510 DLVKGGPT-SSKRDALVAILNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PE--ESVTILEAVVKRGG----LTAIVAAY 580 (683)
Q Consensus 510 ~lL~~~~~-~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~--~~~~aL~~L~~l~~----~~e~~~~~ 580 (683)
.+|...++ .++..|+.|+..|-.+.. +...+...++...|...|.++ .+ ...+++..+..+.. ..+.....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 99986654 577999999999988754 788889999999999999863 22 26667766665442 12233334
Q ss_pred CchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 581 NTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 581 g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
+....++.+....+....++|..++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 555566667777888999999988877665
No 55
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00099 Score=68.33 Aligned_cols=264 Identities=15% Similarity=0.092 Sum_probs=174.8
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT 453 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~ 453 (683)
.+|.+|.+. ++.++..|+..+..++.. ..+.+... .-.++.|..++... ++ -+.|+++|.|++.+..-++
T Consensus 7 elv~ll~~~-sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~----~~--~~~a~~alVnlsq~~~l~~ 77 (353)
T KOG2973|consen 7 ELVELLHSL-SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL----DP--AEPAATALVNLSQKEELRK 77 (353)
T ss_pred HHHHHhccC-ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc----cc--ccHHHHHHHHHHhhHHHHH
Confidence 478899988 999999999999888876 24444443 35788889998876 44 5678999999999988888
Q ss_pred HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhc----ccHHHHHH-hhcCC-Ch-hHHHHHHH
Q 048793 454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKT----RVVKGLMD-LVKGG-PT-SSKRDALV 525 (683)
Q Consensus 454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~----G~i~~Lv~-lL~~~-~~-~~~~~A~~ 525 (683)
.+... .+..+++.+-+.. ...-...|-+|.||+..++....+. ... .++.-|+. ....+ +. .-...-+-
T Consensus 78 ~ll~~--~~k~l~~~~~~p~-~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 78 KLLQD--LLKVLMDMLTDPQ-SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHH--HHHHHHHHhcCcc-cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 88775 8888998887763 3455678889999999876444332 111 23444443 33332 22 23367788
Q ss_pred HHHHhcCCcchhHHHHhcCchHH--HHHHhccCch-hHHHHHHHHHHcCCcH---HHHHHcCchHHHH------------
Q 048793 526 AILNLAGDRETVGRLVERGIVEI--VAEAMDVLPE-ESVTILEAVVKRGGLT---AIVAAYNTIKKLC------------ 587 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~aG~V~~--Lv~lL~~~~~-~~~~aL~~L~~l~~~~---e~~~~~g~v~~Lv------------ 587 (683)
.+.||+....+|..+.+...++. |+.+-..+.. ......++|-|.|... +.... -.+..|.
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCcccc
Confidence 88899999888888766553221 1111111111 1444555565544221 11111 1111121
Q ss_pred ------------HHHh-----cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHH
Q 048793 588 ------------ILLR-----EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAALL 649 (683)
Q Consensus 588 ------------~lL~-----~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL 649 (683)
+.+. ..++.++..-+.+|..||... ..++.++.-|+.+++.++-... ++++++..-.+.
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~---~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR---AGREVLRSKGVYPILRELHKWEEDEDIREACEQVV 310 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh---HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence 2221 257788999999999999843 4577789999999999886654 778888888888
Q ss_pred HHHHh
Q 048793 650 RILRR 654 (683)
Q Consensus 650 ~~l~~ 654 (683)
.++-+
T Consensus 311 q~Lv~ 315 (353)
T KOG2973|consen 311 QMLVR 315 (353)
T ss_pred HHHHh
Confidence 88877
No 56
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00013 Score=83.12 Aligned_cols=175 Identities=15% Similarity=0.162 Sum_probs=143.7
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
.+..||.|+.+|+...+.+++..|+++|..++.--+..-..+++.|+||.|+. |+.-. -.++-|.++.+|-.++.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie----yiDvAEQ~LqALE~iSR 284 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE----YIDVAEQSLQALEKISR 284 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh----hhHHHHHHHHHHHHHHh
Confidence 35678999999988668999999999999999999988999999999999996 55555 67899999999999986
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc--chhhHHhhhcccHHHHHHhhcCCChhHHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH--AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALV 525 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~--~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
... +.|..+ |+|...+..|.-= +..+++.|.++..|+|..- +.-..+ ..++|.|-.+|...+....+.++-
T Consensus 285 ~H~--~AiL~A-G~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v---~ealPlL~~lLs~~D~k~ies~~i 357 (1051)
T KOG0168|consen 285 RHP--KAILQA-GALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFV---MEALPLLTPLLSYQDKKPIESVCI 357 (1051)
T ss_pred hcc--HHHHhc-ccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHH---HHHHHHHHHHHhhccchhHHHHHH
Confidence 432 467787 9999999998765 5789999999999999642 222233 358999999999998888888888
Q ss_pred HHHHhcCC----cchhHHHHhcCchHHHHHHhc
Q 048793 526 AILNLAGD----RETVGRLVERGIVEIVAEAMD 554 (683)
Q Consensus 526 aL~nLs~~----~~n~~~iv~aG~V~~Lv~lL~ 554 (683)
++..++.. ++--.++...|.|.-..++|.
T Consensus 358 c~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 358 CLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 88888642 334567788999999999986
No 57
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.04 E-value=5e-05 Score=68.57 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=106.7
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
.+.+..||.-.....+.+.++.....|.+++.+. .|-..+.+.+++...+.-|... |..+.+.++..|+|+|.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl~e~----ne~LvefgIgglCNlC~d~ 89 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSLEEQ----NELLVEFGIGGLCNLCLDK 89 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHhhcc----cHHHHHHhHHHHHhhccCh
Confidence 4567778887766558899999999999999865 5999999999999999999998 9999999999999999999
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhh
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGR 500 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~ 500 (683)
.|++-|.++ ++++.++..|++. .....-.|+.+|..|+.... .+..+..
T Consensus 90 ~n~~~I~ea-~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 90 TNAKFIREA-LGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHHHHHh-cCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 999999998 9999999999887 47777888888999987643 5555544
No 58
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.04 E-value=0.00044 Score=78.99 Aligned_cols=253 Identities=13% Similarity=0.144 Sum_probs=174.9
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc-ccCc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNL-SILE 449 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL-s~~~ 449 (683)
..++.+.+.|.++ ++.+|..|+.++..+.+.+++. +... .++.|..+|.+. |+.++..|+.++..+ ..++
T Consensus 114 ~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~----~~~V~~~a~~~l~~i~~~~~ 184 (526)
T PF01602_consen 114 PLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDK----DPSVVSAALSLLSEIKCNDD 184 (526)
T ss_dssp HHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHS----SHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCC----cchhHHHHHHHHHHHccCcc
Confidence 3566778888888 9999999999999998876532 2223 699999999888 999999999999999 2222
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
... .+.. ..+..|..++... ++-.+.....+|..++........- ...++.+..++.+.++.+.-.|+.++..
T Consensus 185 ~~~-~~~~--~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 185 SYK-SLIP--KLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp HHT-THHH--HHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh-hhHH--HHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 212 1221 3455566666556 6888888889998887654433311 3578888888887778888999999998
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccCch-hHHHHHHHHHHcCCcH-HHHHHcCchHHHHHHHh-cCChHHHHHHHHHHH
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVLPE-ESVTILEAVVKRGGLT-AIVAAYNTIKKLCILLR-EGSDTSRESAAATLV 606 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~-~~~~aL~~L~~l~~~~-e~~~~~g~v~~Lv~lL~-~~s~~~ke~A~~aL~ 606 (683)
+..... .-..++++|+.+|.+... ..--++..|..++... .... .....+..+. ..+..+|..+..+|.
T Consensus 258 l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 258 LSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF---NQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp HSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG---THHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred hhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh---hhhhhhheecCCCChhHHHHHHHHHh
Confidence 877665 445678889999985433 5666777777776544 2222 2333334455 678889999999999
Q ss_pred HHHhcCCchHHHHHHhcCCcHHHHHHHh-hcCCHHHHHHHHHHHHHHHhhh
Q 048793 607 TICRKGGSEMVADIAAVPGIERVIWELM-ESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 607 ~L~~~~~~~~~~~~~~~~G~~~~L~~Ll-~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
.++.. ..+.. +++-|...+ ..+++..++.+...+..+....
T Consensus 330 ~l~~~---~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 330 KLANE---SNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HH--H---HHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred hcccc---cchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 99873 22232 356666666 4447778888888777776643
No 59
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.01 E-value=0.0009 Score=73.39 Aligned_cols=195 Identities=11% Similarity=0.026 Sum_probs=141.1
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-----CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-----GAIALLARHLGPDTASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-----G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL 445 (683)
..+..++.+|+.....+.....+.-+..+..+++..-..+.+. +...+++.+|..+ |.-++..|..+|..+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~----d~~i~~~a~~iLt~l 128 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ----DQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC----chhHHHHHHHHHHHH
Confidence 4567788888765578888888888888888776444455553 4566777888887 888999999999888
Q ss_pred ccCchhH-HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC--hhHHHH
Q 048793 446 SILEANK-TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP--TSSKRD 522 (683)
Q Consensus 446 s~~~~~k-~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~--~~~~~~ 522 (683)
......+ ...... -...-|...|+++.+...+..++.+|..|...+++|..+.. .++++.|+++|+... .+..-.
T Consensus 129 ~~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~Y~ 206 (429)
T cd00256 129 ACFGLAKMEGSDLD-YYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQYQ 206 (429)
T ss_pred HhcCccccchhHHH-HHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHHHH
Confidence 5432211 100000 12334555666553577888899999999999999999988 679999999998643 467788
Q ss_pred HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-ch-hHHHHHHHHHHcC
Q 048793 523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PE-ESVTILEAVVKRG 571 (683)
Q Consensus 523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~-~~~~aL~~L~~l~ 571 (683)
++-++|-|+.+++....+.+.|.|+.|++++... .+ .+.-++++|.|+.
T Consensus 207 ~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 207 SIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 9999999999888777777789999999998753 22 2555566665544
No 60
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.5e-06 Score=89.04 Aligned_cols=68 Identities=29% Similarity=0.535 Sum_probs=57.8
Q ss_pred CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHc
Q 048793 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQ 343 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 343 (683)
..+++.||||++.+++|++++|||+||+.||+.|+. +...||.|+. . ...+.+|..+.+++..+...+
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999 6678999996 2 226779999988888776544
No 61
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.00 E-value=5.7e-06 Score=60.59 Aligned_cols=43 Identities=44% Similarity=0.904 Sum_probs=38.6
Q ss_pred cccccccCCCCceecC-CccccchhhHHHHHhcCCCCCCCCCCc
Q 048793 278 RCPISLELMRNPVVVA-TGQTYDRQSISLWIESGHNTCPKTGQT 320 (683)
Q Consensus 278 ~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~g~~~cP~~~~~ 320 (683)
.|||+++.+.+|+.+. |||.|+..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 999999999999999877889999864
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.97 E-value=0.00022 Score=76.21 Aligned_cols=264 Identities=14% Similarity=0.145 Sum_probs=178.2
Q ss_pred hhhhHHHHHHHhccCCCHHH--HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 369 TKMTASFLINKLATSQSMEA--ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~--~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
.+|....|++++.++ +.+. +.+|.+.|..+.. .+||+.++..| +..++.+-+.. ..++.+...+.+|.++-
T Consensus 178 ~~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~---e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAP-NLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKER---EPVELARSVAGILEHMF 250 (832)
T ss_pred ccchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhc---CcHHHHHHHHHHHHHHh
Confidence 456788899999888 6554 7888888887764 36999999876 44444444322 15678888999999998
Q ss_pred cC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793 447 IL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 447 ~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A 523 (683)
.| ++.+..++.. |++..++-..+.. ++....+++-+|.|++.. .+.+..+++ ..+-+-|..+-.+.+.-.+-+|
T Consensus 251 KHSeet~~~Lvaa-~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 251 KHSEETCQRLVAA-GGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred hhhHHHHHHHHhh-cccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHH
Confidence 77 4668888888 9999998888777 699999999999998865 457778887 6778888888776666678899
Q ss_pred HHHHHHhcCCcchhHHHHhcCc---hHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHH
Q 048793 524 LVAILNLAGDRETVGRLVERGI---VEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~aG~---V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
+-|..-|+.+.+--..+-+.|. |++|+..+..+. -+..+- ...++.. ..-+.-|+-+|.+ .+....
T Consensus 328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~-FARD~h-------d~aQG~~-~d~LqRLvPlLdS--~R~EAq 396 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGR-FARDAH-------DYAQGRG-PDDLQRLVPLLDS--NRLEAQ 396 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcch-hhhhhh-------hhhccCC-hHHHHHhhhhhhc--chhhhh
Confidence 9999999988776666666664 555666554321 011000 0000000 0114456666663 332223
Q ss_pred HHHHHHHHHhcCC---chHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 601 AAATLVTICRKGG---SEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 601 A~~aL~~L~~~~~---~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
++++ +.+|.... ......++.+-|+++.|-++..+.+.-..+-|...|+.+.+
T Consensus 397 ~i~A-F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 397 CIGA-FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 3333 23343211 01113456777999999999987777777888999999876
No 63
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.5e-06 Score=95.37 Aligned_cols=72 Identities=32% Similarity=0.486 Sum_probs=67.1
Q ss_pred CCCCCcccccccccCCCCceecC-CccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHc
Q 048793 271 ANVPADFRCPISLELMRNPVVVA-TGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQ 343 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 343 (683)
.++|++|..|++.-+|+|||+.| +|+|.||+.|+.++-. ..+.|.||++|+.+.+.||..|+.-|+.|..++
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999999998 9999999999999986 668999999999999999999999999997654
No 64
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.1e-06 Score=78.47 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=43.6
Q ss_pred cccccccccCCCC--ceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793 276 DFRCPISLELMRN--PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT 328 (683)
Q Consensus 276 ~f~CPis~~~m~d--Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p 328 (683)
-|.||||++-+.. ||.+.|||.||+.||+..++. ...||.|++.+++.++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 4999999988855 556899999999999999987 558999999887766543
No 65
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.95 E-value=0.0018 Score=69.14 Aligned_cols=267 Identities=14% Similarity=0.106 Sum_probs=184.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhH---HHHHHhCcHHHHHHhhCC-CCCCCChhhHHHHHHHHHhcccCc
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSR---ACIAEAGAIALLARHLGP-DTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr---~~i~~~G~Ip~Lv~lL~s-~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
++.+.+|..+ +.-....+.+.|..++..+..+- +.-...| .|-..+.+ . +....-.|+.+|..+...+
T Consensus 117 ~~fl~ll~r~-d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~---~l~~~l~~~~----~~~~~~~~~rcLQ~ll~~~ 188 (442)
T KOG2759|consen 117 LSFLNLLNRQ-DTFIVEMSFRILSKLACFGNCKMELSELDVYKG---FLKEQLQSST----NNDYIQFAARCLQTLLRVD 188 (442)
T ss_pred HHHHHHHhcC-ChHHHHHHHHHHHHHHHhccccccchHHHHHHH---HHHHHHhccC----CCchHHHHHHHHHHHhcCc
Confidence 4567788777 77777778888888877664221 1111122 33445555 3 5666777888999999999
Q ss_pred hhHHHHhcccCcHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVL-RSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAI 527 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL-~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL 527 (683)
+.|..++.+ .++..++..| ++..+.+.+-..+-+++-|+..+...+.+-. .+.|+.|++++++.. ..+.+-.+.++
T Consensus 189 eyR~~~v~a-dg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~ 266 (442)
T KOG2759|consen 189 EYRYAFVIA-DGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIF 266 (442)
T ss_pred chhheeeec-CcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 7788888888 4433688899999999999999988888844 899999999998764 45778899999
Q ss_pred HHhcCCcc-------hhHHHHhcCchHHHHHHhcc--CchhHHHHHHHH----HH----cCCcHHHHHH-----------
Q 048793 528 LNLAGDRE-------TVGRLVERGIVEIVAEAMDV--LPEESVTILEAV----VK----RGGLTAIVAA----------- 579 (683)
Q Consensus 528 ~nLs~~~~-------n~~~iv~aG~V~~Lv~lL~~--~~~~~~~aL~~L----~~----l~~~~e~~~~----------- 579 (683)
.|++...+ -...|+..++.+.+-.+... +.+.....+..| .+ +++-.+-..+
T Consensus 267 ~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~ 346 (442)
T KOG2759|consen 267 RNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPV 346 (442)
T ss_pred HHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcc
Confidence 99988663 33455666655555444431 122211222211 11 2222111111
Q ss_pred -------------c-----CchHHHHHHHhcCC-hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHH
Q 048793 580 -------------Y-----NTIKKLCILLREGS-DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTAR 640 (683)
Q Consensus 580 -------------~-----g~v~~Lv~lL~~~s-~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~ 640 (683)
. .-+..|+++|...+ |..-..|+.=+...-++.+. ...++.+.|+=..+..|+.+.+++
T Consensus 347 Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~--gk~vv~k~ggKe~vM~Llnh~d~~ 424 (442)
T KOG2759|consen 347 HKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE--GKAVVEKYGGKERVMNLLNHEDPE 424 (442)
T ss_pred ccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch--HhHHHHHhchHHHHHHHhcCCCch
Confidence 1 12456777777544 67777777777888887765 456788899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 048793 641 ARRKAAALLRIL 652 (683)
Q Consensus 641 ~k~kA~~lL~~l 652 (683)
+|-.|...++.|
T Consensus 425 Vry~ALlavQ~l 436 (442)
T KOG2759|consen 425 VRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
No 66
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.93 E-value=4.9e-06 Score=83.04 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=56.0
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHH
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWC 340 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 340 (683)
-++|-||.+.++-|++++||||||--||..++.. +..||.|+.+.....+.-+..++..++.|.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 4689999999999999999999999999999985 789999999888777777777777776664
No 67
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.91 E-value=4.4e-06 Score=61.59 Aligned_cols=40 Identities=33% Similarity=0.772 Sum_probs=33.2
Q ss_pred cccccccCCC---CceecCCccccchhhHHHHHhcCCCCCCCCC
Q 048793 278 RCPISLELMR---NPVVVATGQTYDRQSISLWIESGHNTCPKTG 318 (683)
Q Consensus 278 ~CPis~~~m~---dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~ 318 (683)
.||||++-|. .++.++|||+|.+.||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999998883 5557799999999999999987 56999985
No 68
>PF05536 Neurochondrin: Neurochondrin
Probab=97.90 E-value=0.00052 Score=78.28 Aligned_cols=233 Identities=13% Similarity=0.101 Sum_probs=156.0
Q ss_pred cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch----hHHHHhcccCcHHHHHHHHhcCC------CHHHHHHHHHH
Q 048793 415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA----NKTRIMETEGALNGVIEVLRSGA------TWEAKGNAAAT 484 (683)
Q Consensus 415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~----~k~~I~~~~G~I~~Lv~lL~~~~------~~~~~~~Aa~~ 484 (683)
.+..-+.+|++. +.+-+-.++..+.++..+++ .++.|.++ =+.+.+-++|+++. ....+.-|..+
T Consensus 6 ~l~~c~~lL~~~----~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKSA----DDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhccC----CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 345567788887 65555666777777765433 24567776 55788999998732 25667889999
Q ss_pred HHHhhcCcchh--hHHhhhcccHHHHHHhhcCCCh-hHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHH
Q 048793 485 IFSLSGVHAHR--KTLGRKTRVVKGLMDLVKGGPT-SSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESV 561 (683)
Q Consensus 485 L~~Ls~~~~~~--~~i~~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~ 561 (683)
|..+|..++.. ..+ .+-||.|++.+.+.+. ....+|..+|..++.+++++..+++.|+|+.|.+.+.+.+...+
T Consensus 81 L~~f~~~~~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E 157 (543)
T PF05536_consen 81 LAAFCRDPELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQME 157 (543)
T ss_pred HHHHcCChhhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHH
Confidence 99999977643 344 3569999999988777 88999999999999999999999999999999999987655577
Q ss_pred HHHHHHHHcCCcHH--HHHH-c----CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCch---HHHHHHhcCCcHHHHH
Q 048793 562 TILEAVVKRGGLTA--IVAA-Y----NTIKKLCILLREGSDTSRESAAATLVTICRKGGSE---MVADIAAVPGIERVIW 631 (683)
Q Consensus 562 ~aL~~L~~l~~~~e--~~~~-~----g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~---~~~~~~~~~G~~~~L~ 631 (683)
.++.+|.++..... .... . ..++.+...........+-..+..|..+-...+.. ....--.-..+..-|.
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence 77777766442211 1111 1 11334444454555666667777777776554210 0000011123456666
Q ss_pred HHhhcC-CHHHHHHHHHHHHHHHhh
Q 048793 632 ELMESG-TARARRKAAALLRILRRW 655 (683)
Q Consensus 632 ~Ll~~~-~~~~k~kA~~lL~~l~~~ 655 (683)
.++++. ++.-|..|..+...|-+.
T Consensus 238 ~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 238 DILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777776 667777776666666553
No 69
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.86 E-value=2.1e-05 Score=56.98 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=37.5
Q ss_pred CchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 403 DSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 403 ~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
+++++..+++.|+||.|+.+|.+. +.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~----~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP----DPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS----SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC----CHHHHHHHHHHHHHHh
Confidence 357899999999999999999998 9999999999999986
No 70
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00096 Score=78.88 Aligned_cols=233 Identities=15% Similarity=0.157 Sum_probs=153.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC--c
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL--E 449 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~--~ 449 (683)
.+.+-.+|.|. +...|..|+.+|..++.+..+. .... ..+++..+..|.++ ++.+|-.|+.+++.++.+ +
T Consensus 350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il~~Vl~~l~Dp----hprVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 350 FEALEAMLQST-EWKERHAALLALSVIAEGCSDV--MIGNLPKILPIVLNGLNDP----HPRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHhhhhhhcH
Confidence 34566788888 9999999999999988766432 2222 25777778888888 999999999999999976 3
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHH-hhcCCChhHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMD-LVKGGPTSSKRDALVAIL 528 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~ 528 (683)
+..+.--+ -.++.|+..+.+..++.++.+|+.+|.|++..-.......--.+.+..++. ++.++++.+++.++++|.
T Consensus 423 ~iqk~~~e--~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 423 EIQKKHHE--RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHHHHHHH--hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 33333222 477789999987657899999999999998765444433332456663443 456677889999999999
Q ss_pred HhcCCcchhHHHHhcCchHHHHHHhccCc--h------hHHHHHHHHHHcCCcHHHHHHcCc-hHHHHHH---HhcCChH
Q 048793 529 NLAGDRETVGRLVERGIVEIVAEAMDVLP--E------ESVTILEAVVKRGGLTAIVAAYNT-IKKLCIL---LREGSDT 596 (683)
Q Consensus 529 nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~--~------~~~~aL~~L~~l~~~~e~~~~~g~-v~~Lv~l---L~~~s~~ 596 (683)
..+...+..-.=--.-.+|.|.+.|.... + .+.++++.++.--|.......... +..+..+ ....++.
T Consensus 501 svA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~ 580 (1075)
T KOG2171|consen 501 SVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDP 580 (1075)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccc
Confidence 98775443321112346777888876432 2 155677776664443333322211 2222222 1223556
Q ss_pred HHHHHHHHHHHHHhcCCc
Q 048793 597 SRESAAATLVTICRKGGS 614 (683)
Q Consensus 597 ~ke~A~~aL~~L~~~~~~ 614 (683)
.+++-...-.++|+--+.
T Consensus 581 ~~sy~~~~warmc~ilg~ 598 (1075)
T KOG2171|consen 581 LRSYMIAFWARMCRILGD 598 (1075)
T ss_pred cHHHHHHHHHHHHHHhch
Confidence 677777777788885554
No 71
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00029 Score=78.32 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=182.4
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHH--HHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRA--CIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~--~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
...+.|..+|.+. +...++.|.++|..++.++.+--. +.-+ .-.||.++.+.+++ ++.++.+|+..+...-
T Consensus 128 elLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~----spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 128 ELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP----SPKIRSHAVGCVNQFI 202 (885)
T ss_pred hHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC----ChhHHHHHHhhhhhee
Confidence 3578899999988 888899999999999988763211 1111 24789999999999 9999999999886654
Q ss_pred cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
... +...+..-..+++.+..+-... ++++|++.|.+|..|-.....|..=-- .++|+-.+..-.+.+..+.-.|+.-
T Consensus 203 ~~~-~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 203 IIQ-TQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEF 279 (885)
T ss_pred ecC-cHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHH
Confidence 332 2223332224666666665444 799999999999999877654433322 5677888877777788888889999
Q ss_pred HHHhcCCcchhHHHHh--cCchHHHHHHhc---------c-Cch------------------------------------
Q 048793 527 ILNLAGDRETVGRLVE--RGIVEIVAEAMD---------V-LPE------------------------------------ 558 (683)
Q Consensus 527 L~nLs~~~~n~~~iv~--aG~V~~Lv~lL~---------~-~~~------------------------------------ 558 (683)
...++..+--+..+.. ...||.|++-|. . ..+
T Consensus 280 wla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe 359 (885)
T KOG2023|consen 280 WLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE 359 (885)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence 9999988754444443 367777776442 0 000
Q ss_pred --------------hHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcC
Q 048793 559 --------------ESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVP 624 (683)
Q Consensus 559 --------------~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~ 624 (683)
-.+.++.+|++.-+.. ... -..|.|-..|.+..-.+||.++-+|.+++.++-+..+.- + +
T Consensus 360 ~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-L--p 433 (885)
T KOG2023|consen 360 DDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-L--P 433 (885)
T ss_pred cccccccccccHhhccHHHHHHHHHhhHHH-HHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-h--H
Confidence 0223444444322211 000 013333344445666789999999999987432211111 1 2
Q ss_pred CcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 625 GIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 625 G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
.++|.|+.++.+..+-+|.-+.|.|..++.|-
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 46888899999999999999999999998864
No 72
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.84 E-value=1.5e-05 Score=56.13 Aligned_cols=39 Identities=49% Similarity=1.038 Sum_probs=35.8
Q ss_pred ccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCC
Q 048793 279 CPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKT 317 (683)
Q Consensus 279 CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~ 317 (683)
|||+++...+|++++|||.|+..++.+|++.+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789975
No 73
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=4.3e-05 Score=83.85 Aligned_cols=73 Identities=25% Similarity=0.415 Sum_probs=65.7
Q ss_pred CCCCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHc
Q 048793 270 DANVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQ 343 (683)
Q Consensus 270 ~~~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 343 (683)
..+||++|..|++..+|+|||.+ .+|.|.+|+.|..++-. ..++|..|.||+-++++||..||+-|-.|....
T Consensus 848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 35899999999999999999988 56899999999999876 568999999999999999999999999886543
No 74
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00096 Score=76.15 Aligned_cols=54 Identities=13% Similarity=0.397 Sum_probs=49.4
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT 328 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p 328 (683)
+-++||.|..=.+|-|++.|||.||-.||+.-++.-...||.|+.++...++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 557899999999999999999999999999999987889999999998887765
No 75
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.80 E-value=0.00019 Score=64.96 Aligned_cols=130 Identities=11% Similarity=0.009 Sum_probs=104.3
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHH
Q 048793 460 GALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGR 539 (683)
Q Consensus 460 G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 539 (683)
|.+..||.-..+..+.++++...+-|.|.+-++-|=..+.. ..++...|+-|...+...++.++..|.|||.+..|+.-
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 45777887777766899999999999999998888888877 89999999999999999999999999999999999999
Q ss_pred HHhcCchHHHHHHhccCchh-HHHHHHHHHHcCCc-HHHHHHcCchHHHHHHHh
Q 048793 540 LVERGIVEIVAEAMDVLPEE-SVTILEAVVKRGGL-TAIVAAYNTIKKLCILLR 591 (683)
Q Consensus 540 iv~aG~V~~Lv~lL~~~~~~-~~~aL~~L~~l~~~-~e~~~~~g~v~~Lv~lL~ 591 (683)
++++|++|.++..+++.++. .-.++..|..++.. ...+..+ --|.++..+.
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el-l~p~Vv~~v~ 147 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL-LSPAVVRTVQ 147 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh-ccHHHHHHHH
Confidence 99999999999999976665 55666667666632 2222222 2355556554
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.72 E-value=0.0035 Score=68.97 Aligned_cols=208 Identities=13% Similarity=0.008 Sum_probs=108.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK 452 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k 452 (683)
+..|+..|... ++.++..++..|..+ ...++.+.|+.+|.+. ++.++..++.++..
T Consensus 88 ~~~L~~~L~d~-~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~~----~p~vR~aal~al~~-------- 143 (410)
T TIGR02270 88 LRSVLAVLQAG-PEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAAS----EPPGRAIGLAALGA-------- 143 (410)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcCC----ChHHHHHHHHHHHh--------
Confidence 44455555544 455555555555322 1124455566666665 66666555544433
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
... ...+.+..+|++. ++.++..|+.+|..+- . ..+++.|...+.+.++.++..|+.+|..+-.
T Consensus 144 ---r~~-~~~~~L~~~L~d~-d~~Vra~A~raLG~l~----------~-~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 144 ---HRH-DPGPALEAALTHE-DALVRAAALRALGELP----------R-RLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred ---hcc-ChHHHHHHHhcCC-CHHHHHHHHHHHHhhc----------c-ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 111 2345566666655 5666666666666542 2 3455666666666666666666666644321
Q ss_pred CcchhHHHHhcCchHHHHHHhc-cCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhc
Q 048793 533 DRETVGRLVERGIVEIVAEAMD-VLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRK 611 (683)
Q Consensus 533 ~~~n~~~iv~aG~V~~Lv~lL~-~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~ 611 (683)
.+++.+++.+.. .+......+..++... +.+ ..++.|..+++. +.+++.++.+|-.+-
T Consensus 208 ----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~------~a~~~L~~ll~d--~~vr~~a~~AlG~lg-- 266 (410)
T TIGR02270 208 ----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGP------DAQAWLRELLQA--AATRREALRAVGLVG-- 266 (410)
T ss_pred ----------HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cch------hHHHHHHHHhcC--hhhHHHHHHHHHHcC--
Confidence 122334444222 1222222223333222 211 234455555543 336666666644332
Q ss_pred CCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 612 GGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 612 ~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
....++.|+.++.+.. +++.|...++.+..
T Consensus 267 -----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 267 -----------DVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred -----------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 2345677777666544 99999999999987
No 77
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=6.4e-06 Score=84.90 Aligned_cols=68 Identities=22% Similarity=0.378 Sum_probs=56.0
Q ss_pred CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCC-CCCcchHHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAH-TNLVTNTALKNLIALW 339 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~ 339 (683)
.+-.+|.||||+++++-..++ .|+|.||+.||-+-+..|+..||.|++.+.. ..|.+...+..+|.+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 355789999999999999888 8999999999999999999999999999864 3566554455666654
No 78
>PHA02926 zinc finger-like protein; Provisional
Probab=97.70 E-value=2.6e-05 Score=75.86 Aligned_cols=51 Identities=16% Similarity=0.417 Sum_probs=41.1
Q ss_pred CCCCcccccccccCCCC---------ceecCCccccchhhHHHHHhcC-----CCCCCCCCCccC
Q 048793 272 NVPADFRCPISLELMRN---------PVVVATGQTYDRQSISLWIESG-----HNTCPKTGQTLA 322 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~d---------Pv~~~~g~ty~r~~I~~w~~~g-----~~~cP~~~~~l~ 322 (683)
....+..|+||++...+ +++.+|||+||..||.+|.+.. ..+||.||+.+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34567889999998754 4777999999999999999742 356999998764
No 79
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=5.3e-05 Score=78.44 Aligned_cols=52 Identities=29% Similarity=0.546 Sum_probs=42.1
Q ss_pred Cccccccccc-CCCCce---ec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCC
Q 048793 275 ADFRCPISLE-LMRNPV---VV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL 326 (683)
Q Consensus 275 ~~f~CPis~~-~m~dPv---~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l 326 (683)
++..||+|.. ....|- ++ +|||+||++||...|..|...||.|+.++....+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 5678999986 344553 33 7999999999999988888899999999887663
No 80
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0076 Score=71.58 Aligned_cols=273 Identities=15% Similarity=0.139 Sum_probs=158.6
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch-h
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA-N 451 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~ 451 (683)
+.+.+.+..+ +..++..|++++..++...+.|+..... ...+|.++..|......+|...-..++.+|-.|..... .
T Consensus 162 ~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 162 RLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 3444555555 3348888999888888777545544444 36778787777654433366555666666666654321 1
Q ss_pred HHHHhcccCcHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCcchhhH----Hh---------------------------
Q 048793 452 KTRIMETEGALNGVIEVLRSG-ATWEAKGNAAATIFSLSGVHAHRKT----LG--------------------------- 499 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~-~~~~~~~~Aa~~L~~Ls~~~~~~~~----i~--------------------------- 499 (683)
-..... ..|.....+.++. .+..+|..|...|..++.......+ ++
T Consensus 241 l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 241 LRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 111111 1344444444432 2356677777777666654110000 00
Q ss_pred hh-------------------cc-------cHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhc---CchHHHH
Q 048793 500 RK-------------------TR-------VVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVER---GIVEIVA 550 (683)
Q Consensus 500 ~~-------------------~G-------~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a---G~V~~Lv 550 (683)
++ -| .++.+-.+|.+.+..-++.|+.||..++.+ +...+.. .+++..+
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG---CSDVMIGNLPKILPIVL 395 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHH
Confidence 00 00 233333445566666667777777666542 2222221 3344445
Q ss_pred HHhccC-chhHHHHHHHHHHcCCc--HHHH--HHcCchHHHHHHHh-cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcC
Q 048793 551 EAMDVL-PEESVTILEAVVKRGGL--TAIV--AAYNTIKKLCILLR-EGSDTSRESAAATLVTICRKGGSEMVADIAAVP 624 (683)
Q Consensus 551 ~lL~~~-~~~~~~aL~~L~~l~~~--~e~~--~~~g~v~~Lv~lL~-~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~ 624 (683)
..|.+. +.+.-.|+-++..++++ ++.- .+....+.|+..+. .++++++-+|+.+|.+.............+ .
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d 473 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--D 473 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--H
Confidence 555543 34455566666666643 2222 22234567878775 478899999999999998776665666665 4
Q ss_pred CcHH-HHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 625 GIER-VIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 625 G~~~-~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
+++. .|..|.+++++.+|+.|...|.-...
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 6676 77778999999999999998876655
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=97.65 E-value=0.0032 Score=71.92 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=158.6
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchh---HHHHHHhCcHHHHHHhhCCCCC---CCChhhHHHHHHHHHhc
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDS---RACIAEAGAIALLARHLGPDTA---SRLPNLQVNAVTTILNL 445 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n---r~~i~~~G~Ip~Lv~lL~s~~~---~~d~~~qe~A~~aL~nL 445 (683)
.+...+.+|++. +.+.+..++--+.++.+.++.+ ++.+.++=+...|-+||.++.. .+....+.-|+++|..+
T Consensus 6 ~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 355678899988 7788899999999999877643 4457787567899999998532 12346778899999999
Q ss_pred ccCchhH--HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793 446 SILEANK--TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 446 s~~~~~k--~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A 523 (683)
+.+++.. ..++ +-||.|++++.++.+.+....+..+|..++..++++..+.. .|+|+.|++.+.+ .+...+.|
T Consensus 85 ~~~~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 85 CRDPELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred cCChhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHH
Confidence 9877653 3444 45999999999874448999999999999999999999999 8999999999987 55678999
Q ss_pred HHHHHHhcCCcchhHHHHhc----CchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHH-----HHcC----chHHHHHH
Q 048793 524 LVAILNLAGDRETVGRLVER----GIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIV-----AAYN----TIKKLCIL 589 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~a----G~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~-----~~~g----~v~~Lv~l 589 (683)
+.+|.+++...+....--.. .+++.|-...... .......+..|..+=...+.. .... ....|..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 99999997754421111111 2233333333322 334566677775532222110 0001 12345555
Q ss_pred Hhc-CChHHHHHHHHHHHHHHhc
Q 048793 590 LRE-GSDTSRESAAATLVTICRK 611 (683)
Q Consensus 590 L~~-~s~~~ke~A~~aL~~L~~~ 611 (683)
|++ .++..|..|..+...|...
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHH
Confidence 654 4666666666655555543
No 82
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.61 E-value=7.6e-05 Score=54.00 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=36.7
Q ss_pred cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
++++..+.+ .|+||+|+.+|+++++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 567888888 8999999999999999999999999999973
No 83
>PTZ00429 beta-adaptin; Provisional
Probab=97.56 E-value=0.014 Score=68.93 Aligned_cols=254 Identities=11% Similarity=0.088 Sum_probs=164.9
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT 453 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~ 453 (683)
+..++.+.+. +.+.+.-..-.|.+.++..++.-. =+|..|.+=|.+. |+.++..|+.+|.++-. .
T Consensus 71 ~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~----Np~IRaLALRtLs~Ir~-----~ 135 (746)
T PTZ00429 71 VDVVKLAPST-DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNS----SPVVRALAVRTMMCIRV-----S 135 (746)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCC----CHHHHHHHHHHHHcCCc-----H
Confidence 3456667777 888877777777777765553211 2466677777777 99999999999988743 2
Q ss_pred HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793 454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD 533 (683)
Q Consensus 454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.+++. .++.+.+.|.+. ++-+|+.|+-++.++-..+.. .+.. .|.++.|.++|.+.++.+..+|+.+|..++..
T Consensus 136 ~i~e~--l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~pe--lv~~-~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 136 SVLEY--TLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDMQ--LFYQ-QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHH--HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCcc--cccc-cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 33332 566777888776 799999999999999765442 2333 68999999999999999999999999999865
Q ss_pred cchhHHHHhcCchHHHHHHhccCch-hHHHHHHHHHHcCC-cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhc
Q 048793 534 RETVGRLVERGIVEIVAEAMDVLPE-ESVTILEAVVKRGG-LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRK 611 (683)
Q Consensus 534 ~~n~~~iv~aG~V~~Lv~lL~~~~~-~~~~aL~~L~~l~~-~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~ 611 (683)
..+.-. ...+.+..|+..|.+..+ .....+..|....- ..+. ....+..+...|++.++.+.-.|+.+++.+...
T Consensus 210 ~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 210 GSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred CchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 443221 234556666776654333 25566666655321 1111 112345566667778888888888888888754
Q ss_pred CCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 612 GGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 612 ~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
........++. .+.++|+.| .++.+.+|--+..-|..+..
T Consensus 287 ~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 287 CSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLV 326 (746)
T ss_pred CCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence 32222222221 133556666 34566777666655544443
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.49 E-value=0.00015 Score=76.78 Aligned_cols=51 Identities=29% Similarity=0.519 Sum_probs=46.2
Q ss_pred ccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793 277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT 328 (683)
Q Consensus 277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p 328 (683)
+.|.|++++-++||+- .+||.|||+.|++++.+ +.+||+|+++|...+++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 4699999999999977 78999999999999987 678999999998887765
No 85
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=7.1e-05 Score=74.71 Aligned_cols=52 Identities=19% Similarity=0.403 Sum_probs=46.0
Q ss_pred CCCcccccccccCCCCceecCCccccchhhHHH-HHhcCCCCCCCCCCccCCC
Q 048793 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISL-WIESGHNTCPKTGQTLAHT 324 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~-w~~~g~~~cP~~~~~l~~~ 324 (683)
+..+|.|+||++.+.+|+-++|||.||=.||-. |..+....||.||+...+.
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 357999999999999999999999999999999 9887677899999765443
No 86
>PTZ00429 beta-adaptin; Provisional
Probab=97.43 E-value=0.022 Score=67.17 Aligned_cols=180 Identities=11% Similarity=0.032 Sum_probs=116.9
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
.+..+.+.|.+. ++-+|..|+-++.++-..++ ..+.+.|.++.|..+|... |+.++.+|+.+|..+......
T Consensus 141 l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~----dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 141 TLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDN----NPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCC----CccHHHHHHHHHHHHHHhCch
Confidence 345566777777 99999999999999876555 3445678999999999988 999999999999999754333
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA 531 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
.-.+. . +.+..|+..|..- +.=.+.....+|.... +...... ...+..+...|.+.++.+.-.|+.++.++.
T Consensus 213 ~l~l~-~-~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 213 KIESS-N-EWVNRLVYHLPEC-NEWGQLYILELLAAQR--PSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred hhHHH-H-HHHHHHHHHhhcC-ChHHHHHHHHHHHhcC--CCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 22222 2 4566677777654 3445555555553321 1111111 356778888888888889999999999997
Q ss_pred CCcc-hhHHHHhcCchHHHHHHhccCchhHHHHHHHH
Q 048793 532 GDRE-TVGRLVERGIVEIVAEAMDVLPEESVTILEAV 567 (683)
Q Consensus 532 ~~~~-n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L 567 (683)
...+ .....+-.-..++|+.++.++++..--+|..|
T Consensus 285 ~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I 321 (746)
T PTZ00429 285 SRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNI 321 (746)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHH
Confidence 6531 11111111233667777665555544444444
No 87
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.43 E-value=0.0012 Score=73.79 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALN 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~ 463 (683)
|......|+-.+..++..-..-|.-+....++.+||++|..+ +..++..++.+|.|+... .+.|...... |+|+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp----~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId 464 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP----EIMIMGITLGAICNLVMEFSNLKSKFLRN-NGID 464 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc----chhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHH
Confidence 677777788788777765444555566678999999999887 888999999999999864 6778888898 9999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhc-ccHHHHHHhhcCCChhHHHHHHHHHHHhcCC-cchhHHHH
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKT-RVVKGLMDLVKGGPTSSKRDALVAILNLAGD-RETVGRLV 541 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~-G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv 541 (683)
.+...+.+. +...|.++.|+|+++..+.+......-.. =.-..++.+..+++..+++.+...|.||.-+ .+....++
T Consensus 465 ~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 465 ILESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred HHHHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 999999988 68999999999999998876544432211 2344567777888899999999999999554 44555555
Q ss_pred h
Q 048793 542 E 542 (683)
Q Consensus 542 ~ 542 (683)
+
T Consensus 544 ~ 544 (678)
T KOG1293|consen 544 E 544 (678)
T ss_pred H
Confidence 4
No 88
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.39 E-value=0.00017 Score=72.54 Aligned_cols=66 Identities=20% Similarity=0.391 Sum_probs=55.5
Q ss_pred ccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCc-cCCCCCcchHHHHHHHHHHHHH
Q 048793 277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQT-LAHTNLVTNTALKNLIALWCRE 342 (683)
Q Consensus 277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~-l~~~~l~pn~~l~~~i~~~~~~ 342 (683)
+.||+|+.++++|+-+ +|||+||..||+..+-+....||.|... .--+.+.|.+..+..++.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 8999999999999988 8999999999999987667899999653 3345678988888888887653
No 89
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.37 E-value=0.039 Score=60.07 Aligned_cols=270 Identities=18% Similarity=0.160 Sum_probs=171.7
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR 454 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~ 454 (683)
.+..++-++ +.+++..+.+.+|.+..+.. .-..+.+.+.--.++.-|..... +..-++.|+..+..+.....+...
T Consensus 29 ~i~~~lL~~-~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 29 RIQCMLLSD-SKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHCCC-cHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCccc
Confidence 344455556 68888888999988877654 66777777766666777766521 445678899888777544333333
Q ss_pred HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793 455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
+ .. |.+..||.+..+. +...+..|..+|..++..+. ..+.. .||+..|++.+.++..+..+..+.++.++-.++
T Consensus 105 ~-~~-~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 105 I-PR-GVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred C-CH-HHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence 3 33 7899999999987 67899999999999987643 23334 899999999998887778888999999999999
Q ss_pred chhHHHHhcCchHHHHHHhccC--------c--hh---HHHHHHHH-HHcCCcHHHH-HHcCchHHHHHHHhcCChHHHH
Q 048793 535 ETVGRLVERGIVEIVAEAMDVL--------P--EE---SVTILEAV-VKRGGLTAIV-AAYNTIKKLCILLREGSDTSRE 599 (683)
Q Consensus 535 ~n~~~iv~aG~V~~Lv~lL~~~--------~--~~---~~~aL~~L-~~l~~~~e~~-~~~g~v~~Lv~lL~~~s~~~ke 599 (683)
..|..+...--+..++.-..+. . +. +..++..+ ....|---.. ....++..|+..|...++.+++
T Consensus 179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence 8887765433344444443321 1 12 22222222 2222100000 0002344455544444444444
Q ss_pred HHHHHHHHHHhc--------------------------------------------CCc------hHHHHHHhcCCcHHH
Q 048793 600 SAAATLVTICRK--------------------------------------------GGS------EMVADIAAVPGIERV 629 (683)
Q Consensus 600 ~A~~aL~~L~~~--------------------------------------------~~~------~~~~~~~~~~G~~~~ 629 (683)
.-..+|..+-.- ..+ .....++.+.|+++.
T Consensus 259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~ 338 (371)
T PF14664_consen 259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEA 338 (371)
T ss_pred HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHH
Confidence 444444332110 000 123445778999999
Q ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHh
Q 048793 630 IWELMESG-TARARRKAAALLRILRR 654 (683)
Q Consensus 630 L~~Ll~~~-~~~~k~kA~~lL~~l~~ 654 (683)
|+.+..+. ++...+||.-||.-+-+
T Consensus 339 L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 339 LVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 99998888 88999999999886544
No 90
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00012 Score=79.53 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=58.0
Q ss_pred CCCcccccccccCCCCceecCCccccchhhHHHHHhc----CCCCCCCCCCccCCCCCcch----HHHHHHHHHHHHHcC
Q 048793 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES----GHNTCPKTGQTLAHTNLVTN----TALKNLIALWCREQR 344 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~----g~~~cP~~~~~l~~~~l~pn----~~l~~~i~~~~~~~~ 344 (683)
++.+..||||++.-.-|+.+.|||.||-.||-++|.. +...||.|+..+...++.|- ..-++.++..+..||
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 3448899999999999999999999999999998864 45789999998887776653 223445777788887
No 91
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.36 E-value=0.00015 Score=53.41 Aligned_cols=40 Identities=20% Similarity=0.452 Sum_probs=34.4
Q ss_pred ccccccCC---CCceecCCccccchhhHHHHHhcCCCCCCCCCC
Q 048793 279 CPISLELM---RNPVVVATGQTYDRQSISLWIESGHNTCPKTGQ 319 (683)
Q Consensus 279 CPis~~~m---~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~ 319 (683)
||++.+.+ ..|++++|||+|+..||.++. .....||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88998888 467899999999999999998 44678999974
No 92
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.004 Score=70.84 Aligned_cols=236 Identities=17% Similarity=0.168 Sum_probs=171.2
Q ss_pred hHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCc------hhH------HHHHH-----hCcHHHHHHhhCCCCCCCChh
Q 048793 372 TASFLINKLATS-QSMEAANDAVYELRSLSKTDS------DSR------ACIAE-----AGAIALLARHLGPDTASRLPN 433 (683)
Q Consensus 372 ~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~------~nr------~~i~~-----~G~Ip~Lv~lL~s~~~~~d~~ 433 (683)
+.+.|+..|..+ .|++....++..+.++..+++ ..+ .||++ .+.|..|+.++... |-.
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~----DF~ 137 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF----DFH 137 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh----chh
Confidence 456677777653 488999999999999887763 222 23333 48999999999998 999
Q ss_pred hHHHHHHHHHhccc--CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHh
Q 048793 434 LQVNAVTTILNLSI--LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDL 511 (683)
Q Consensus 434 ~qe~A~~aL~nLs~--~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~l 511 (683)
++..|+..|.+|-. ..+.+..+...|-+|..|+.+|... ...+|-.+.-.|..|+.+..+-.+++.-..++.-|..+
T Consensus 138 VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsI 216 (970)
T KOG0946|consen 138 VRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSI 216 (970)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 99999999998854 3567888888889999999999877 47788888889999999988888888778999999999
Q ss_pred hcCCC-h---hHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhcc---Cc-h-------h---HHHHHHHHHHcC-
Q 048793 512 VKGGP-T---SSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDV---LP-E-------E---SVTILEAVVKRG- 571 (683)
Q Consensus 512 L~~~~-~---~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~---~~-~-------~---~~~aL~~L~~l~- 571 (683)
+.+.. . -+.++|+..|-||-.++ .|...+.+.|.||.|.++|.. +. + . .-.+|-++..+.
T Consensus 217 IeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVs 296 (970)
T KOG0946|consen 217 IEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVS 296 (970)
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcC
Confidence 97532 2 26799999999998854 699999999999999999862 11 1 1 222333333221
Q ss_pred -CcHHH--------HHHcCchHHHHHHHhc--CChHHHHHHHHHHHHHHhcC
Q 048793 572 -GLTAI--------VAAYNTIKKLCILLRE--GSDTSRESAAATLVTICRKG 612 (683)
Q Consensus 572 -~~~e~--------~~~~g~v~~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~ 612 (683)
++... ....+.+..|..++.+ ....++-.+.-++.++.+++
T Consensus 297 P~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 297 PGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred CCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 22222 1222445666665543 24556666777777776643
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.047 Score=64.03 Aligned_cols=253 Identities=15% Similarity=0.169 Sum_probs=163.6
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR 454 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~ 454 (683)
-+...|....++..+.-|+..+..++... +.-.-+++.|.+-.|+.+|.+. +..++.++.+|..|+...+.-..
T Consensus 1775 l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~lLHS~-----PS~R~~vL~vLYAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1775 LLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTLLHSQ-----PSMRARVLDVLYALSSNGQIGKE 1848 (2235)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHHHhcC-----hHHHHHHHHHHHHHhcCcHHHHH
Confidence 34444443326778888888888777644 4777788899999999999885 78899999999999998877777
Q ss_pred HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-------------------------------------ch---
Q 048793 455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-------------------------------------AH--- 494 (683)
Q Consensus 455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-------------------------------------~~--- 494 (683)
-++. |++.-|..++-...+++.|..|+..|..|...+ +|
T Consensus 1849 A~~h-g~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPEL 1927 (2235)
T KOG1789|consen 1849 ALEH-GGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPEL 1927 (2235)
T ss_pred HHhc-CchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccc
Confidence 7777 888888888876667899999999999887654 00
Q ss_pred --------------------------------------------------------hhHHhh-----------hcccHHH
Q 048793 495 --------------------------------------------------------RKTLGR-----------KTRVVKG 507 (683)
Q Consensus 495 --------------------------------------------------------~~~i~~-----------~~G~i~~ 507 (683)
|..+.. -.|.++.
T Consensus 1928 iWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek 2007 (2235)
T KOG1789|consen 1928 IWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEK 2007 (2235)
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHH
Confidence 000000 0013344
Q ss_pred HHHhhcCCChh--HHHHHHHHHHHhcC-CcchhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHHHcCC---cHHHHHHc
Q 048793 508 LMDLVKGGPTS--SKRDALVAILNLAG-DRETVGRLVERGIVEIVAEAMDV-LPEESVTILEAVVKRGG---LTAIVAAY 580 (683)
Q Consensus 508 Lv~lL~~~~~~--~~~~A~~aL~nLs~-~~~n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~~l~~---~~e~~~~~ 580 (683)
+.+++...++. ...--..|+..|-. ++.-...+-.-|.+|.++..+.- +...-..|+.+|..++. +.+.....
T Consensus 2008 ~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l 2087 (2235)
T KOG1789|consen 2008 VLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQL 2087 (2235)
T ss_pred HHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcc
Confidence 44444433322 11222233333333 33344555567999999998852 22223445555554443 34455555
Q ss_pred CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc
Q 048793 581 NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES 636 (683)
Q Consensus 581 g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~ 636 (683)
..+.++++.|+..-. .---|+.+|..+.....++.+.+.+ ..|.++.|+.|+..
T Consensus 2088 ~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2088 PCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred ccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHh-ccCcHHHHHHHhcc
Confidence 566678887764322 2237888999888766666666644 68999999999775
No 94
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.28 E-value=0.017 Score=61.83 Aligned_cols=229 Identities=16% Similarity=0.146 Sum_probs=156.7
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHH
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRI 455 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I 455 (683)
|-..+.++.+.+-..-|+++|..+...++ .|..++.++++..|+..|.++.+ +..+|-+.+-++.-|+.++...+.+
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~--~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKC--GFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCc--chhHHHHHHHHHHHhhcCHHHHHHH
Confidence 33445553366777788889999988764 99999999999999999843322 7789999999999999888887777
Q ss_pred hcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-------chhhHHhhhcccHHHHHHhhcCC---ChhHHHHH--
Q 048793 456 METEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-------AHRKTLGRKTRVVKGLMDLVKGG---PTSSKRDA-- 523 (683)
Q Consensus 456 ~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-------~~~~~i~~~~G~i~~Lv~lL~~~---~~~~~~~A-- 523 (683)
... +.|+.|+.++++.....+.+..++++.||.... +.+..++ .+.++.-++.|..+ +++...+.
T Consensus 238 ~~~-~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~~ 314 (442)
T KOG2759|consen 238 KRF-DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIEF 314 (442)
T ss_pred hhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHHH
Confidence 555 899999999997655778889999999998765 2333444 35667777777543 22222111
Q ss_pred -----HHHHHHhcCC------------------------cchhHHHHhc--CchHHHHHHhccCchh-----HHHHHHHH
Q 048793 524 -----LVAILNLAGD------------------------RETVGRLVER--GIVEIVAEAMDVLPEE-----SVTILEAV 567 (683)
Q Consensus 524 -----~~aL~nLs~~------------------------~~n~~~iv~a--G~V~~Lv~lL~~~~~~-----~~~aL~~L 567 (683)
-.-...||+. .+|..++-+. .++..|+.+|..+.+- +..=++..
T Consensus 315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 1111222221 3466777664 5788999999754321 22222222
Q ss_pred H-HcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 568 V-KRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 568 ~-~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
. ........+...||=..+.++|.+.++++|-+|..++-.|-.
T Consensus 395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 2 233344455666888999999999999999999988766543
No 95
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.28 E-value=0.0011 Score=56.02 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=69.5
Q ss_pred HHHHHHHh-ccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 373 ASFLINKL-ATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 373 i~~Lv~~L-~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
|+.|++.| .+. ++.++..|+..|..+. ...++|.|+.+++++ ++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGELG-----------DPEAIPALIELLKDE----DPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSS----SHHHHHHHHHHHHCCH-----
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCC----CHHHHHHHHHHHHHhC-----
Confidence 57789989 666 9999999999998442 125699999999888 9999999999999872
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF 486 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~ 486 (683)
. +.+++.|.+++.+..+..++..|+.+|.
T Consensus 60 -----~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----D-PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2 3689999999988755667888888763
No 96
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.20 E-value=0.00025 Score=77.59 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=55.0
Q ss_pred CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc-hHHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT-NTALKNLIALW 339 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p-n~~l~~~i~~~ 339 (683)
.+.+++.||+|..++.||+.+ .|||.||+.||..|... +..||.+++.+......| -..+++.+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 367789999999999999995 99999999999999988 889999988877666555 23445555544
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.19 E-value=0.0016 Score=55.10 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=69.3
Q ss_pred HHHHHHhh-CCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch
Q 048793 416 IALLARHL-GPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH 494 (683)
Q Consensus 416 Ip~Lv~lL-~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~ 494 (683)
||.|+..| .++ ++.++..|+.+|.++- . +.+++.|++++++. ++.+|..|+.+|..+
T Consensus 1 i~~L~~~l~~~~----~~~vr~~a~~~L~~~~----------~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i------ 58 (88)
T PF13646_consen 1 IPALLQLLQNDP----DPQVRAEAARALGELG----------D-PEAIPALIELLKDE-DPMVRRAAARALGRI------ 58 (88)
T ss_dssp HHHHHHHHHTSS----SHHHHHHHHHHHHCCT----------H-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHhcCC----CHHHHHHHHHHHHHcC----------C-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHh------
Confidence 68899988 777 9999999999998542 1 14689999999877 799999999999977
Q ss_pred hhHHhhhcccHHHHHHhhcCCChh-HHHHHHHHHH
Q 048793 495 RKTLGRKTRVVKGLMDLVKGGPTS-SKRDALVAIL 528 (683)
Q Consensus 495 ~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~aL~ 528 (683)
+. ..+++.|.+++.+++.. ++..|+.+|.
T Consensus 59 ----~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ----GD-PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HH-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----CC-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 33 67899999999876544 5788888773
No 98
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.06 E-value=0.00057 Score=56.23 Aligned_cols=39 Identities=33% Similarity=0.702 Sum_probs=31.8
Q ss_pred ccccccCCCCc-------------eecCCccccchhhHHHHHhcCCCCCCCCC
Q 048793 279 CPISLELMRNP-------------VVVATGQTYDRQSISLWIESGHNTCPKTG 318 (683)
Q Consensus 279 CPis~~~m~dP-------------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~ 318 (683)
|+||++.|.|| +..+|||.|-..||.+|+.. +.+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999998444 34489999999999999986 45999986
No 99
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.06 E-value=0.0012 Score=47.20 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=35.6
Q ss_pred hhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 405 DSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 405 ~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
+++..+.+.|++|.|+.+|.++ +..++..|+++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~----~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE----DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHc
Confidence 4888999999999999999988 9999999999999986
No 100
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.04 E-value=0.087 Score=58.97 Aligned_cols=247 Identities=13% Similarity=0.157 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhccc-CchhHHHHhcccCcH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSI-LEANKTRIMETEGAL 462 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I 462 (683)
+.++..+|+++|+|+...++..|..+++.|..+.++..|+..... .+.++.-....+|+-++. ..+.+..++...+++
T Consensus 45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~ 124 (446)
T PF10165_consen 45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGV 124 (446)
T ss_pred ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhH
Confidence 788999999999999999999999999999999999999875221 256777778888877764 456676676655888
Q ss_pred HHHHHHHhc--------C--------CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC---------Ch
Q 048793 463 NGVIEVLRS--------G--------ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG---------PT 517 (683)
Q Consensus 463 ~~Lv~lL~~--------~--------~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~---------~~ 517 (683)
..|+..|.. . .+.+....+..++||+......... -...+.++.|+.+|..- ..
T Consensus 125 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~ 203 (446)
T PF10165_consen 125 ELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLD 203 (446)
T ss_pred HHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence 888887751 1 1244566788889999765433322 11135566666654321 13
Q ss_pred hHHHHHHHHHHHhcCCc-ch-------hHH----HHhcCchHHHHHHhcc----C-----chhHHHHHHHHHHcCCc-HH
Q 048793 518 SSKRDALVAILNLAGDR-ET-------VGR----LVERGIVEIVAEAMDV----L-----PEESVTILEAVVKRGGL-TA 575 (683)
Q Consensus 518 ~~~~~A~~aL~nLs~~~-~n-------~~~----iv~aG~V~~Lv~lL~~----~-----~~~~~~aL~~L~~l~~~-~e 575 (683)
....+++.+|.|+-... .. ... ......+..|+++|.. . .+.....+.+|..++.. ..
T Consensus 204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~ 283 (446)
T PF10165_consen 204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE 283 (446)
T ss_pred hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence 46688889999883211 11 111 1223467777777751 1 13355666677665543 22
Q ss_pred HHHHc-----------------C-c-hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc
Q 048793 576 IVAAY-----------------N-T-IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES 636 (683)
Q Consensus 576 ~~~~~-----------------g-~-v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~ 636 (683)
.+... | . -..|+++|.+..+..|..+...|+.||..+. ..+++.-|.--.---|.+.
T Consensus 284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~----~~~v~~~GyG~AaG~L~~~ 359 (446)
T PF10165_consen 284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA----SRFVKYVGYGNAAGFLASR 359 (446)
T ss_pred HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH----HHHHHHcCchhHHHHHHHc
Confidence 21111 1 1 3467788877779999999999999998543 3445555654433333333
No 101
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.25 Score=54.97 Aligned_cols=257 Identities=16% Similarity=0.170 Sum_probs=138.9
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
..|+|-.+|++. -..++.++++.++.++..+- -..+.+ -.|..|-.+|+++ ....|-.|+.+|..|+.-...
T Consensus 265 ~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~----rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 265 LRPFLNSWLSDK-FEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKST----RVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcc----hHHHHHHHHHHHHHHHhhCCc
Confidence 457777788776 57888999999999887652 122222 3577888899998 889999999999999754332
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA 531 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
+..+... -++.|+ ... +...-..|..+|..-- .+++-..++. .|+..+.=+.+ .-+.-++.|+..||
T Consensus 337 kv~vcN~--evEsLI---sd~-Nr~IstyAITtLLKTG-t~e~idrLv~---~I~sfvhD~SD---~FKiI~ida~rsLs 403 (898)
T COG5240 337 KVSVCNK--EVESLI---SDE-NRTISTYAITTLLKTG-TEETIDRLVN---LIPSFVHDMSD---GFKIIAIDALRSLS 403 (898)
T ss_pred eeeecCh--hHHHHh---hcc-cccchHHHHHHHHHcC-chhhHHHHHH---HHHHHHHhhcc---CceEEeHHHHHHHH
Confidence 2221111 122222 111 1222223333332211 1111111111 12222222221 22222333333333
Q ss_pred CCcc-hhH--------HHHhcC-------chHHHHHHhccCchhHHHHHHHHHHc---CCcHHHHHHc----Cc------
Q 048793 532 GDRE-TVG--------RLVERG-------IVEIVAEAMDVLPEESVTILEAVVKR---GGLTAIVAAY----NT------ 582 (683)
Q Consensus 532 ~~~~-n~~--------~iv~aG-------~V~~Lv~lL~~~~~~~~~aL~~L~~l---~~~~e~~~~~----g~------ 582 (683)
..-+ .+. .+.+.| +|.++.+++...++..+.||..||.. |..++....+ |.
T Consensus 404 l~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~ 483 (898)
T COG5240 404 LLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAK 483 (898)
T ss_pred hhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCC
Confidence 3211 111 112223 24456666665677888888888763 3334433222 11
Q ss_pred -----hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 583 -----IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 583 -----v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
+..+...+--.+.-+|..|+.+|...+-+..+....+ .+.-.|-..+.+.++.+|..|+.+|+.++.
T Consensus 484 ~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~-----sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 484 TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ-----SVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH-----HHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 3344444444566778888888866665444432222 345566678888999999999999999986
No 102
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0006 Score=73.77 Aligned_cols=72 Identities=19% Similarity=0.393 Sum_probs=58.8
Q ss_pred CCCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCC-----CcchHHHHHHHHHHHHH
Q 048793 270 DANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN-----LVTNTALKNLIALWCRE 342 (683)
Q Consensus 270 ~~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~-----l~pn~~l~~~i~~~~~~ 342 (683)
+..++.+|-|-||...+.+||++||||+||+.||++-.+. ...||.|+.++.... ..+|+.+.++|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567899999999999999999999999999999997664 678999998876421 22466677888888754
No 103
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.045 Score=61.41 Aligned_cols=186 Identities=13% Similarity=0.195 Sum_probs=125.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHH
Q 048793 462 LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLV 541 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 541 (683)
++.++.-+... ....+.+++..|..++........... ..+||.|.+.|.+..+++++.+..+|..++.--+|-. +
T Consensus 256 lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I- 331 (569)
T KOG1242|consen 256 LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I- 331 (569)
T ss_pred hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H-
Confidence 44444444444 478899999999999888777777776 7899999999999999999999999999998766654 1
Q ss_pred hcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHH----HhcCChHHHHHHHHHHHHHHhcCCch-H
Q 048793 542 ERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCIL----LREGSDTSRESAAATLVTICRKGGSE-M 616 (683)
Q Consensus 542 ~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~l----L~~~s~~~ke~A~~aL~~L~~~~~~~-~ 616 (683)
.-.+|.|++.+.+....+.+++..|.....-.+.. .-.+..++-+ +...+...++.++.+.+|+|+--.+. .
T Consensus 332 -~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~--~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~ 408 (569)
T KOG1242|consen 332 -QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVD--APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD 408 (569)
T ss_pred -HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeec--chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH
Confidence 12467888888754446777777775532211111 1123334444 44457778899999999999865432 2
Q ss_pred HHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH-HHHHhhh
Q 048793 617 VADIAAVPGIERVIWELMESGTARARRKAAALL-RILRRWA 656 (683)
Q Consensus 617 ~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL-~~l~~~~ 656 (683)
+...+ .-++|-|-..+...-|.+|.-|+..| .++.+.+
T Consensus 409 lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 409 LAPFL--PSLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred HhhhH--HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 22222 23444455555566799999988888 4444433
No 104
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.97 E-value=0.00045 Score=71.23 Aligned_cols=64 Identities=13% Similarity=0.383 Sum_probs=51.0
Q ss_pred CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCC----CcchHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN----LVTNTALKNLI 336 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~----l~pn~~l~~~i 336 (683)
++-...+|++|..+|.|+.+| .|=|||||+||-+++.. ..+||.|+-.+.... +.+..+|+.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiV 79 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIV 79 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHH
Confidence 345678999999999999976 89999999999999998 789999987665443 44555665554
No 105
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.15 Score=53.09 Aligned_cols=229 Identities=15% Similarity=0.143 Sum_probs=156.7
Q ss_pred HHhccCCCHHHHHHHHHHHHhhhccCchhH----HHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793 378 NKLATSQSMEAANDAVYELRSLSKTDSDSR----ACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT 453 (683)
Q Consensus 378 ~~L~s~~~~~~~~~A~~~L~~La~~~~~nr----~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~ 453 (683)
.-|..+ +..++.-++..+..+..+.+.|- ..++.+|..|.++...... |.++-..|...+..++..++.-.
T Consensus 89 rGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge----ddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 89 RGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE----DDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC----cHHHHHHHHHHHHHHHhcHHHHH
Confidence 334444 55555566666666665555332 2455789999999999888 89999999999999999888888
Q ss_pred HHhcccCcHHHHHH--HHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-CChhHHHHHHHHHHHh
Q 048793 454 RIMETEGALNGVIE--VLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-GPTSSKRDALVAILNL 530 (683)
Q Consensus 454 ~I~~~~G~I~~Lv~--lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~nL 530 (683)
.|..+ .....+-. +--.. +.-+|......+-.+++.......-+...|.+..|..=|+. .+.-+..+++...+.|
T Consensus 164 aiFeS-ellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 164 AIFES-ELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred Hhccc-ccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 88876 55544322 22222 34567777777777776654433444447888888777764 3444678888889999
Q ss_pred cCCcchhHHHHhcCchHHHHHHhcc---CchhHHHHHHHHHHcCCcHHHH--------HH-cCchHHHHHHHhcCChHHH
Q 048793 531 AGDRETVGRLVERGIVEIVAEAMDV---LPEESVTILEAVVKRGGLTAIV--------AA-YNTIKKLCILLREGSDTSR 598 (683)
Q Consensus 531 s~~~~n~~~iv~aG~V~~Lv~lL~~---~~~~~~~aL~~L~~l~~~~e~~--------~~-~g~v~~Lv~lL~~~s~~~k 598 (683)
...+-++..+.+.|.|..+-.++.. ++-..-+++.....+-++.... .. +-.+.....++...++...
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 9888899999999999999999873 2333555666665544433221 11 1334555566778899999
Q ss_pred HHHHHHHHHHHhcCC
Q 048793 599 ESAAATLVTICRKGG 613 (683)
Q Consensus 599 e~A~~aL~~L~~~~~ 613 (683)
+.|+.+|..|.++..
T Consensus 322 eaAiDalGilGSnte 336 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE 336 (524)
T ss_pred HHHHHHHHhccCCcc
Confidence 999999988877543
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.90 E-value=0.0077 Score=60.90 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=107.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCc---chhhHHhh-hcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCch
Q 048793 471 SGATWEAKGNAAATIFSLSGVH---AHRKTLGR-KTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIV 546 (683)
Q Consensus 471 ~~~~~~~~~~Aa~~L~~Ls~~~---~~~~~i~~-~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V 546 (683)
++.+.+.|..|...|..+.... .....+.. -...+..++..+.+....+.+.|+.++..|+..-.+.-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3347999999999999988765 33333322 1234456667777666678899999999998765544332334578
Q ss_pred HHHHHHhccCchh----HHHHHHHHHHcCC-cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCC--chHHHH
Q 048793 547 EIVAEAMDVLPEE----SVTILEAVVKRGG-LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGG--SEMVAD 619 (683)
Q Consensus 547 ~~Lv~lL~~~~~~----~~~aL~~L~~l~~-~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~--~~~~~~ 619 (683)
|.|++.+.+.... +..++..+...++ .... ..+.+...+.+.++..|..++..|..+....+ ......
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 8999998865332 4555555555443 1211 13445555678899999999998888876555 111111
Q ss_pred HHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793 620 IAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA 657 (683)
Q Consensus 620 ~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~ 657 (683)
-..-..+++.+..++.++++.+|+.|..++..|.+..+
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 11113467888899999999999999999999987543
No 107
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.12 Score=55.89 Aligned_cols=241 Identities=16% Similarity=0.112 Sum_probs=160.4
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-----h----hHHHHHHhCcHHHHHHhhCCC--CCCCChhhHHH
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-----D----SRACIAEAGAIALLARHLGPD--TASRLPNLQVN 437 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-----~----nr~~i~~~G~Ip~Lv~lL~s~--~~~~d~~~qe~ 437 (683)
.-.+|+.|+.+|.+. +.++....+.-|..|+..+. + --..+++.++++.|+.-+..- ...+......+
T Consensus 123 eln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~ 201 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN 201 (536)
T ss_pred HhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 346788999999998 99999999999998886542 1 234566779999999887653 00012334567
Q ss_pred HHHHHHhccc-CchhHHHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhc-
Q 048793 438 AVTTILNLSI-LEANKTRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVK- 513 (683)
Q Consensus 438 A~~aL~nLs~-~~~~k~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~- 513 (683)
+++.+-|+.. .++....+++. |.+.-|..-+. .+.-..-+..|..+|.-+-.+ ++++...+. -.+|..|++-+.
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcch
Confidence 7888888875 46778888887 76555554332 222245677888888876654 558888888 777888887652
Q ss_pred ---CC----C-hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHH------HHH
Q 048793 514 ---GG----P-TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAI------VAA 579 (683)
Q Consensus 514 ---~~----~-~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~------~~~ 579 (683)
.+ + .+..++-...|..+-..+.|+.+++...++....=++....-..-.++.+|-....++++ ...
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 11 1 235577778888888889999999998888766666654233366678888654433332 233
Q ss_pred cCchHHHHHHHh-c--------CC-hHHHHHHHHHHHHHHhcC
Q 048793 580 YNTIKKLCILLR-E--------GS-DTSRESAAATLVTICRKG 612 (683)
Q Consensus 580 ~g~v~~Lv~lL~-~--------~s-~~~ke~A~~aL~~L~~~~ 612 (683)
++|...+..+.. . .+ ....|+.+.+||++-.+.
T Consensus 360 ~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 360 ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 455555555432 1 22 234578888888887654
No 108
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.84 E-value=0.031 Score=62.84 Aligned_cols=232 Identities=15% Similarity=0.126 Sum_probs=157.5
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHh-ccc-CchhHH
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILN-LSI-LEANKT 453 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~n-Ls~-~~~~k~ 453 (683)
++..|.+. +++....|.....+++.+.+.++.-+.+.|++|.|..+++...+ ..+.+ +-.++++| +.. .++...
T Consensus 14 ~l~~L~~~-dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~--s~~~k-~~~~~llns~f~~eqd~v~ 89 (678)
T KOG1293|consen 14 LLYRLLHL-DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDG--STELK-NGFAVLLNSLFLGEQDKVD 89 (678)
T ss_pred HHHhhhcC-CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCC--chhhh-hhHHHHHHhHHhhccchHH
Confidence 33445555 78888999999999999988889889999999999999988721 23333 34455555 443 456677
Q ss_pred HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhh--hcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793 454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGR--KTRVVKGLMDLVKGGPTSSKRDALVAILNLA 531 (683)
Q Consensus 454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~--~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
.+... +.++.|..+|.+.++...+....+.+..+-....+...... ....+..+..++..........-+....++|
T Consensus 90 svL~~-~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s 168 (678)
T KOG1293|consen 90 SVLRI-IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS 168 (678)
T ss_pred HHHHH-hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc
Confidence 88887 89999999998873377888888888888766543333221 1234555555544244444455566677788
Q ss_pred CCcchhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHH---H-cCCcHHHHHH------cCchH---HHHHHHhcCChHH
Q 048793 532 GDRETVGRLVERGIVEIVAEAMDV-LPEESVTILEAVV---K-RGGLTAIVAA------YNTIK---KLCILLREGSDTS 597 (683)
Q Consensus 532 ~~~~n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~---~-l~~~~e~~~~------~g~v~---~Lv~lL~~~s~~~ 597 (683)
...+++..+..+|+.+.+.-++.. .......|+--+. . +..++++... .+++. .+.++++++....
T Consensus 169 ~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~ 248 (678)
T KOG1293|consen 169 STKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSE 248 (678)
T ss_pred ccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccH
Confidence 888888888999998887777653 2334556666665 2 2234443322 23333 4555677888888
Q ss_pred HHHHHHHHHHHHhcC
Q 048793 598 RESAAATLVTICRKG 612 (683)
Q Consensus 598 ke~A~~aL~~L~~~~ 612 (683)
+-.++..|..++..+
T Consensus 249 ~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 249 RLRSLECLVPYLRKS 263 (678)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888999999998766
No 109
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.75 E-value=0.091 Score=56.38 Aligned_cols=184 Identities=18% Similarity=0.176 Sum_probs=119.9
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA 493 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~ 493 (683)
-.++.++.++.+. +..++..|...+..+ ... -+++.+..+|... +..+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~----~~~vr~~aa~~l~~~----------~~~-~av~~l~~~l~d~-~~~vr~~a~~aLg~~----- 101 (335)
T COG1413 43 EAADELLKLLEDE----DLLVRLSAAVALGEL----------GSE-EAVPLLRELLSDE-DPRVRDAAADALGEL----- 101 (335)
T ss_pred hhHHHHHHHHcCC----CHHHHHHHHHHHhhh----------chH-HHHHHHHHHhcCC-CHHHHHHHHHHHHcc-----
Confidence 4678888999988 888888888775433 222 5788899999887 688888888866544
Q ss_pred hhhHHhhhcccHHHHHHhhc-CCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchh-------------
Q 048793 494 HRKTLGRKTRVVKGLMDLVK-GGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEE------------- 559 (683)
Q Consensus 494 ~~~~i~~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~------------- 559 (683)
+. ..+++.|+.+|. +.+..++..|+++|..+-.. .++.+|+..+.+....
T Consensus 102 -----~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 102 -----GD-PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDV 165 (335)
T ss_pred -----CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHH
Confidence 33 568889999988 46777889999999886432 2377777777643211
Q ss_pred HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCH
Q 048793 560 SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTA 639 (683)
Q Consensus 560 ~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~ 639 (683)
...++..|..+. ....++.+...+......++..|+.+|..+.... ..+.+.+...+.+.+.
T Consensus 166 r~~a~~~l~~~~-------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~~~~~ 227 (335)
T COG1413 166 RAAAAEALGELG-------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------VEAADLLVKALSDESL 227 (335)
T ss_pred HHHHHHHHHHcC-------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------hhHHHHHHHHhcCCCH
Confidence 111111111111 1123667777777778888888888877776642 1334555556666666
Q ss_pred HHHHHHHHHHHHH
Q 048793 640 RARRKAAALLRIL 652 (683)
Q Consensus 640 ~~k~kA~~lL~~l 652 (683)
.++.++...|..+
T Consensus 228 ~vr~~~~~~l~~~ 240 (335)
T COG1413 228 EVRKAALLALGEI 240 (335)
T ss_pred HHHHHHHHHhccc
Confidence 6666555555443
No 110
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.75 E-value=0.0024 Score=45.56 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=34.9
Q ss_pred chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
+++..+.+ .|++++|+.+|.+++++.++.|+++|.||+.
T Consensus 3 ~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 46777777 8999999999998889999999999999973
No 111
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.65 E-value=0.21 Score=54.42 Aligned_cols=251 Identities=13% Similarity=0.031 Sum_probs=168.1
Q ss_pred HHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcC-C
Q 048793 395 ELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSG-A 473 (683)
Q Consensus 395 ~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~-~ 473 (683)
.|..+-+..+.-|..+.-.-..+.+..++-++ +.+++..+..++.-+..+.+.-..+.+. +.--.++.-|... .
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~----~~~vraa~yRilRy~i~d~~~l~~~~~l-~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD----SKEVRAAGYRILRYLISDEESLQILLKL-HIDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHHHcCHHHHHHHHHc-CCchhhHhhhcccCC
Confidence 34444445554555555445556666566666 7889999999999888888887778776 6555666667643 2
Q ss_pred CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHh
Q 048793 474 TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAM 553 (683)
Q Consensus 474 ~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL 553 (683)
+...|+.|...++.+...+.+...+- .|.+.++|.+..+.+++.+..|+.+|..|+.. |-..++++|++..|++.+
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRAL 156 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHH
Confidence 46789999999999887766555553 58999999999988888999999999999885 345567899999999999
Q ss_pred ccCc-hhHHHHHHHHHHcCCcHHHHHHc--C-chHHHHHHHhcC-------Ch--HHHHHHHHHHHHHHhcCCchHHHHH
Q 048793 554 DVLP-EESVTILEAVVKRGGLTAIVAAY--N-TIKKLCILLREG-------SD--TSRESAAATLVTICRKGGSEMVADI 620 (683)
Q Consensus 554 ~~~~-~~~~~aL~~L~~l~~~~e~~~~~--g-~v~~Lv~lL~~~-------s~--~~ke~A~~aL~~L~~~~~~~~~~~~ 620 (683)
.++. +..+..+.++..+-.++..+.-. | .++.+..-.... +. ..-.++..++..+-+.=+.- ...
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL--l~l 234 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL--LYL 234 (371)
T ss_pred HhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce--eee
Confidence 8642 45677777777766666665533 1 234444433211 11 12234445554444322210 000
Q ss_pred H-hcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 621 A-AVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 621 ~-~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
- .....++.|+..+...++++|+..-.++.-+-+-.
T Consensus 235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 1 11246777888889999999999888777766633
No 112
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.59 E-value=0.025 Score=60.93 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=121.3
Q ss_pred HHHHHHhCcHHHHHHhhCCCCCCCChh--hHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHH
Q 048793 407 RACIAEAGAIALLARHLGPDTASRLPN--LQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAAT 484 (683)
Q Consensus 407 r~~i~~~G~Ip~Lv~lL~s~~~~~d~~--~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~ 484 (683)
.+.|...|++..|++++.++ +.+ ++..|...|-.+. ..+|+..|+.. | +..|+.+-+....++.....+.+
T Consensus 173 CD~iR~~~~lD~Llrmf~aP----n~et~vRve~~rlLEq~~-~aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~i 245 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAP----NLETSVRVEAARLLEQIL-VAENRDRVARI-G-LGVILNLAKEREPVELARSVAGI 245 (832)
T ss_pred hhHhhccchHHHHHHHHhCC----chhHHHHHHHHHHHHHHH-hhhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHH
Confidence 44566679999999999988 655 4777877776653 45677777765 4 55566555544358888899999
Q ss_pred HHHhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc--chhHHHHhcCchHHHHHHhccCchh-H
Q 048793 485 IFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR--ETVGRLVERGIVEIVAEAMDVLPEE-S 560 (683)
Q Consensus 485 L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~--~n~~~iv~aG~V~~Lv~lL~~~~~~-~ 560 (683)
|.++-.+. +.+..+++ .|++.+++-..+..++....+++.||.|+..+. +.+.+|++--+.+.|.-+-.+..+. .
T Consensus 246 l~~mFKHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 246 LEHMFKHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLR 324 (832)
T ss_pred HHHHhhhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence 99998764 57888888 899999998888888999999999999998864 5789999999999988887654443 3
Q ss_pred HHHHHHHHHcCCcHHH
Q 048793 561 VTILEAVVKRGGLTAI 576 (683)
Q Consensus 561 ~~aL~~L~~l~~~~e~ 576 (683)
-.|.-+.+.++++.|.
T Consensus 325 ~~AClAV~vlat~KE~ 340 (832)
T KOG3678|consen 325 LHACLAVAVLATNKEV 340 (832)
T ss_pred HHHHHHHhhhhhhhhh
Confidence 3444444555556554
No 113
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.56 E-value=0.31 Score=52.26 Aligned_cols=182 Identities=19% Similarity=0.204 Sum_probs=119.5
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
..+..+++.+.+. +...+..|+..+..+. ..-++|.|..+|.+. +..++..|+.+|.++
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~----~~~vr~~a~~aLg~~----- 101 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELG-----------SEEAVPLLRELLSDE----DPRVRDAAADALGEL----- 101 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCC----CHHHHHHHHHHHHcc-----
Confidence 4567788888888 8888988888754432 235789999999999 999999999977654
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhH-----------
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSS----------- 519 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~----------- 519 (683)
.. +.+++.++..|.+..+..+|..++.+|..+-. ..++.+|+.++.+.....
T Consensus 102 -----~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~ 164 (335)
T COG1413 102 -----GD-PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLD 164 (335)
T ss_pred -----CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHH
Confidence 22 36789999999953378999999999997743 445888898888765332
Q ss_pred -HHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHH
Q 048793 520 -KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTS 597 (683)
Q Consensus 520 -~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ 597 (683)
+..++.+|..+ -+.-.++.|.+.+.+. ......+...|..+.... ....+.+.+.+...+...
T Consensus 165 ~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 165 VRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHH
Confidence 22222222221 1223567777777654 234555566665544332 122345555555566666
Q ss_pred HHHHHHHH
Q 048793 598 RESAAATL 605 (683)
Q Consensus 598 ke~A~~aL 605 (683)
+..++.+|
T Consensus 230 r~~~~~~l 237 (335)
T COG1413 230 RKAALLAL 237 (335)
T ss_pred HHHHHHHh
Confidence 65555554
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.53 E-value=0.039 Score=55.73 Aligned_cols=187 Identities=14% Similarity=0.114 Sum_probs=109.5
Q ss_pred ccCCCHHHHHHHHHHHHhhhccC--chhHHHHHHh--CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh-HHHH
Q 048793 381 ATSQSMEAANDAVYELRSLSKTD--SDSRACIAEA--GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN-KTRI 455 (683)
Q Consensus 381 ~s~~~~~~~~~A~~~L~~La~~~--~~nr~~i~~~--G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~-k~~I 455 (683)
.+. +.+.+.+|+..|+.+...+ ......+.+. ..++.++..+.+. ...+...|+.++..|+..-.. -...
T Consensus 17 ~~~-~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~----Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 17 SES-DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL----RSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp T-S-SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred Ccc-CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 345 8999999999999999887 3344444432 5667777777776 777889999999998865332 2223
Q ss_pred hcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhccc-HHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793 456 METEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRV-VKGLMDLVKGGPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 456 ~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~-i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
+. ..++.|++.+.++ ..-.++.|..+|..+...-... ..+ ++.+...+.+.++.++..++..|..+....
T Consensus 92 ~~--~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 92 AD--ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HH--HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HH--HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 33 4788888888877 5788999999999988754311 122 455666778888889888888887765543
Q ss_pred c-hhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCC
Q 048793 535 E-TVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGG 613 (683)
Q Consensus 535 ~-n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~ 613 (683)
. +...+-..+.+ ...++.+.+.+...++.+|+.|..+++.+..+.+
T Consensus 163 ~~~~~~l~~~~~~---------------------------------~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 163 GSDSSVLQKSAFL---------------------------------KQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ----GGG--HHHH---------------------------------HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHhhhcccchH---------------------------------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 2 11111000000 0124556666777788888888888877766554
Q ss_pred c
Q 048793 614 S 614 (683)
Q Consensus 614 ~ 614 (683)
+
T Consensus 210 ~ 210 (228)
T PF12348_consen 210 E 210 (228)
T ss_dssp H
T ss_pred H
Confidence 4
No 115
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.044 Score=60.25 Aligned_cols=257 Identities=12% Similarity=0.107 Sum_probs=163.2
Q ss_pred HHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHHHHH
Q 048793 390 NDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEV 468 (683)
Q Consensus 390 ~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~Lv~l 468 (683)
..++..|..+++.-..-|.-+.+..+.++|+++|+.+ +..+.-.+...++|+... ..-+..+... |.|..|+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P----eimi~~~~t~~icn~vv~fsnL~~~fL~~-~iIdvl~~~ 481 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP----EIMIEFPDTIDICNKVVPFSNLGAGFLEK-SIIDVLVNL 481 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc----cceeeccchhhhhheeeeccchHHHHHHh-hHHHHHHHH
Confidence 3444455555555455677888889999999999987 777777788899998754 4456677776 999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCcchh--hHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC-Ccch---hHHHHh
Q 048793 469 LRSGATWEAKGNAAATIFSLSGVHAHR--KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG-DRET---VGRLVE 542 (683)
Q Consensus 469 L~~~~~~~~~~~Aa~~L~~Ls~~~~~~--~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n---~~~iv~ 542 (683)
+.+. +...+.+..|+|++|..+.++- -...+ .-++..++.+.+++.-.+....+..|.|+.- ...| +....+
T Consensus 482 v~sK-DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K 559 (743)
T COG5369 482 VMSK-DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK 559 (743)
T ss_pred hhcc-hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEe
Confidence 9977 6789999999999998775543 33344 4568999999998888899999999999844 2223 333333
Q ss_pred cCch----HHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHc----C-chHHHHHHHh---------------------
Q 048793 543 RGIV----EIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAY----N-TIKKLCILLR--------------------- 591 (683)
Q Consensus 543 aG~V----~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~----g-~v~~Lv~lL~--------------------- 591 (683)
+.-- +.|++.+... +-.....+-+|.+++.+.+..... . -+..+...|.
T Consensus 560 ~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~ 639 (743)
T COG5369 560 ATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI 639 (743)
T ss_pred cChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence 3322 3344444332 323555566666654322211100 0 0000101100
Q ss_pred --------c---------------------CChH---HHHHHHHHHHHHH-hcCCc------hHHHHHHhcCCcHHHHHH
Q 048793 592 --------E---------------------GSDT---SRESAAATLVTIC-RKGGS------EMVADIAAVPGIERVIWE 632 (683)
Q Consensus 592 --------~---------------------~s~~---~ke~A~~aL~~L~-~~~~~------~~~~~~~~~~G~~~~L~~ 632 (683)
. ...+ .--...|...++. ..++. ....+.+.+.|+-..|+.
T Consensus 640 s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k 719 (743)
T COG5369 640 SYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK 719 (743)
T ss_pred ceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence 0 0001 1111222222221 11111 134566888999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHH
Q 048793 633 LMESGTARARRKAAALLRILR 653 (683)
Q Consensus 633 Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
+..+.++.+++|+..+|.+++
T Consensus 720 ~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 720 IQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HhccCcHHHHHHHHHHHHhhh
Confidence 999999999999999999875
No 116
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.41 E-value=0.068 Score=50.21 Aligned_cols=107 Identities=16% Similarity=0.275 Sum_probs=82.5
Q ss_pred CCccchhhhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhcccchHHHHHhhHHHHHHH
Q 048793 45 KPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNF 124 (683)
Q Consensus 45 ~~~~~~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~sklyl~~~~~~~~~~~ 124 (683)
.+.....|-.+..|..-++.|.|+++||...+.. ++.+...-++.|...|++++.|++.|++.+ -|-+..-..+..++
T Consensus 26 ~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~e-ld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki 103 (147)
T PF05659_consen 26 SKKSLSFKSILKRLESTLESIIPIIKEIDKLNVE-LDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKI 103 (147)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhh-cCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHH
Confidence 3444566777778888889999999999887653 555558889999999999999999999886 45556777789999
Q ss_pred HHHHHHHHHHHhc-CCCccccchhhHHHHHHHH
Q 048793 125 HELTIDLSTLLDI-MPLQELRLSQDVEDVVVLI 156 (683)
Q Consensus 125 ~~~~~~l~~~l~~-~p~~~~~~s~ev~e~v~~~ 156 (683)
+++..+|.+.++. +|+. ...|+++....+
T Consensus 104 ~~le~~l~~f~~v~~q~~---~~~D~~~l~~~~ 133 (147)
T PF05659_consen 104 EELEESLRRFIQVDLQLH---QLRDIKELLAKM 133 (147)
T ss_pred HHHHHHHHHHhcchhHHH---HHHHHHHHHHHH
Confidence 9999999999986 6764 334555444443
No 117
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.34 E-value=0.25 Score=54.50 Aligned_cols=179 Identities=15% Similarity=0.042 Sum_probs=115.2
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
..+.|+.+|++. ++..+..++..+... .....+.|+.+|++. ++.++..|+.+|..+-
T Consensus 118 a~~~L~~~L~~~-~p~vR~aal~al~~r------------~~~~~~~L~~~L~d~----d~~Vra~A~raLG~l~----- 175 (410)
T TIGR02270 118 AEPWLEPLLAAS-EPPGRAIGLAALGAH------------RHDPGPALEAALTHE----DALVRAAALRALGELP----- 175 (410)
T ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHhh------------ccChHHHHHHHhcCC----CHHHHHHHHHHHHhhc-----
Confidence 456688899888 888888777555441 123567899999988 9999999999997753
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA 531 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
.. .+++.|...+.+. ++.+|..|+.++..+ +. .+++.+|............. ++.++..+.
T Consensus 176 -----~~-~a~~~L~~al~d~-~~~VR~aA~~al~~l----------G~-~~A~~~l~~~~~~~g~~~~~-~l~~~lal~ 236 (410)
T TIGR02270 176 -----RR-LSESTLRLYLRDS-DPEVRFAALEAGLLA----------GS-RLAWGVCRRFQVLEGGPHRQ-RLLVLLAVA 236 (410)
T ss_pred -----cc-cchHHHHHHHcCC-CHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHhccCccHHH-HHHHHHHhC
Confidence 22 6778888888877 799999999999544 33 45566666644433322322 233333332
Q ss_pred CCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 532 GDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 532 ~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
..+ .+++.|..++.+ +.....++..|..+.. ...++.|+..+. .+..+..|-.++..|..
T Consensus 237 ~~~---------~a~~~L~~ll~d-~~vr~~a~~AlG~lg~-------p~av~~L~~~l~--d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 237 GGP---------DAQAWLRELLQA-AATRREALRAVGLVGD-------VEAAPWCLEAMR--EPPWARLAGEAFSLITG 296 (410)
T ss_pred Cch---------hHHHHHHHHhcC-hhhHHHHHHHHHHcCC-------cchHHHHHHHhc--CcHHHHHHHHHHHHhhC
Confidence 211 566777787774 3355556655554322 124666666664 33477777777777664
No 118
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.11 Score=57.70 Aligned_cols=232 Identities=14% Similarity=0.126 Sum_probs=148.3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhc---cCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSK---TDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~---~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
....+-|..+|+.+ +.+++.-+-..|..+-. .++.. +--...++.|+.-+.+. ++.+|..|+..+....
T Consensus 207 ~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss----~~~iq~~al~Wi~efV 278 (675)
T KOG0212|consen 207 PSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSS----EPEIQLKALTWIQEFV 278 (675)
T ss_pred hHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCC----cHHHHHHHHHHHHHHh
Confidence 33455677788777 77777444433333222 12211 11235788888888888 9999999999998875
Q ss_pred cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHH---HHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793 447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAA---TIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~---~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A 523 (683)
.-........-+ |++..+...+.+......++.+.. .|..+......+..+.- ...|..|...+.++....+-.+
T Consensus 279 ~i~g~~~l~~~s-~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~ 356 (675)
T KOG0212|consen 279 KIPGRDLLLYLS-GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAV 356 (675)
T ss_pred cCCCcchhhhhh-hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHH
Confidence 433332223333 667777777765422234444333 34455555444444433 4578888889998888888888
Q ss_pred HHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHH
Q 048793 524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAA 602 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~ 602 (683)
+.-+..|-....|....-.....+.|+.-|++. .++...+|..|+.+|..++...-...+..|..+......-....+.
T Consensus 357 L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~ 436 (675)
T KOG0212|consen 357 LNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGN 436 (675)
T ss_pred HHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhh
Confidence 888888877777776666678889999999865 5569999999999887665442222233444444445555566777
Q ss_pred HHHHHHHhc
Q 048793 603 ATLVTICRK 611 (683)
Q Consensus 603 ~aL~~L~~~ 611 (683)
-++..||..
T Consensus 437 lIIRqlC~l 445 (675)
T KOG0212|consen 437 LIIRQLCLL 445 (675)
T ss_pred HHHHHHHHH
Confidence 778888864
No 119
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.22 E-value=0.0093 Score=45.87 Aligned_cols=55 Identities=18% Similarity=0.066 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 475 WEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 475 ~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
+.+|..|+++|.+++........-.. ..+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46789999999998866554444333 68999999999998889999999999875
No 120
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.46 Score=52.92 Aligned_cols=269 Identities=14% Similarity=0.118 Sum_probs=167.1
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
+.||.|-+.+... ++..|.--+.=|..+-... .++.+.= ....+.|..+|+.. +.+++..+=.+|.++-..-
T Consensus 167 ~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~----s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 167 EFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDS----SDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHH
Confidence 3455555555445 6777777776666653322 2333321 24566677888887 8888877777666653322
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChh-HHHHHHH---
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTS-SKRDALV--- 525 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~--- 525 (683)
.++...+..+..++.++.-+.++ .++.+..|..-|.............-- .|++..+...+.+.... .+..|..
T Consensus 240 ~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~-s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 240 RSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYL-SGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred hcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhh-hhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 23333334346788899888887 689998888888877766554444444 78888888888776553 4433322
Q ss_pred HHHHhcCCcchhHHHHhcC-chHHHHHHhccCch-hHHHHHHHHHH---cCCcHHHHHHcCchHHHHHHHhcCChHHHHH
Q 048793 526 AILNLAGDRETVGRLVERG-IVEIVAEAMDVLPE-ESVTILEAVVK---RGGLTAIVAAYNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~aG-~V~~Lv~lL~~~~~-~~~~aL~~L~~---l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
.|..++........ ++-| ++..|.+.+.++.+ ....+|.-+.. -..+.-.+....-.+.|.+-|...|+.+-..
T Consensus 318 ~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~ 396 (675)
T KOG0212|consen 318 LLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLL 396 (675)
T ss_pred HHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHH
Confidence 24445554444433 5544 56777777775533 23334443332 2222222222234567778888899999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
+...|.++|....+...+ .++..|.++....+.-.+..+.-++|.|.-.
T Consensus 397 ~L~lla~i~~s~~~~~~~------~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 397 ALSLLASICSSSNSPNLR------KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHHHHhcCcccccHH------HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 999999999876553332 3455666777777777888888888887653
No 121
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.55 Score=48.75 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=113.6
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
..++.+..++... .+ ...|+.+|.+++.... -|+.+.+. .+..+++.+... ....-...+.+|.||+.+++
T Consensus 44 ~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~-l~~~ll~~-~~k~l~~~~~~p----~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 44 ALLKDLTQLLKDL-DP--AEPAATALVNLSQKEE-LRKKLLQD-LLKVLMDMLTDP----QSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred hhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHH-HHHHHHHH-HHHHHHHHhcCc----ccchHHHHHHHHHHhccCch
Confidence 3466677777655 44 6788899999988654 66666666 777788877766 45566778899999999877
Q ss_pred hHHHHh---c---ccCcHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCcchhhHHhhhcccHH-HHHHhhcCCChhHH-H
Q 048793 451 NKTRIM---E---TEGALNGVIEVLRSGATW-EAKGNAAATIFSLSGVHAHRKTLGRKTRVVK-GLMDLVKGGPTSSK-R 521 (683)
Q Consensus 451 ~k~~I~---~---~~G~I~~Lv~lL~~~~~~-~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~-~Lv~lL~~~~~~~~-~ 521 (683)
....+. . ..|.+.....+..++.+. .-..+-+-++.+|+.....|..+.. ..-++ .-..-+.+.+..++ .
T Consensus 115 ~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~-~k~~p~~kll~ft~~~s~vRr~ 193 (353)
T KOG2973|consen 115 EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLE-PKRFPDQKLLPFTSEDSQVRRG 193 (353)
T ss_pred HHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcc-hhhhhHhhhhcccccchhhhcc
Confidence 654333 1 126677777777766432 2235677788899999999988876 34221 11112233333443 6
Q ss_pred HHHHHHHHhcCCcchhHHHHhc--CchHHHH
Q 048793 522 DALVAILNLAGDRETVGRLVER--GIVEIVA 550 (683)
Q Consensus 522 ~A~~aL~nLs~~~~n~~~iv~a--G~V~~Lv 550 (683)
..+.+|.|.|....+...+... .+.|.|+
T Consensus 194 GvagtlkN~cFd~~~h~~lL~e~~~lLp~iL 224 (353)
T KOG2973|consen 194 GVAGTLKNCCFDAKLHEVLLDESINLLPAIL 224 (353)
T ss_pred chHHHHHhhhccchhHHHHhcchHHHHHHHH
Confidence 6789999999999998888773 3344443
No 122
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.10 E-value=0.0043 Score=64.22 Aligned_cols=54 Identities=15% Similarity=0.423 Sum_probs=43.7
Q ss_pred CCCcccccccccCCCC---ce-ecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793 273 VPADFRCPISLELMRN---PV-VVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT 328 (683)
Q Consensus 273 ~p~~f~CPis~~~m~d---Pv-~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p 328 (683)
-...|.||||+..|.. -| +.+|||.|...+|++-- ....||.|++++...++++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 4578999999999954 33 44999999999998883 3457999999999887663
No 123
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.07 E-value=0.63 Score=52.13 Aligned_cols=258 Identities=15% Similarity=0.145 Sum_probs=158.9
Q ss_pred HHHHHhhhccCchhHHHHHHhCcHHHHHHhhC--C----CCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHH
Q 048793 393 VYELRSLSKTDSDSRACIAEAGAIALLARHLG--P----DTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGV 465 (683)
Q Consensus 393 ~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~--s----~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~L 465 (683)
+.+|+.++.+.. +-..+....++..|..+-. . .....+..+...|+.+|.|+-.+ +..|...++. |..+.+
T Consensus 2 L~~LRiLsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL-GLAEKL 79 (446)
T ss_pred HHHHHHHccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHHH
Confidence 456666666443 5566665556666665541 1 11223788999999999998765 4567666676 999999
Q ss_pred HHHHhcC----CCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhhcC--------C---------ChhHHHHH
Q 048793 466 IEVLRSG----ATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLVKG--------G---------PTSSKRDA 523 (683)
Q Consensus 466 v~lL~~~----~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL~~--------~---------~~~~~~~A 523 (683)
+..|+.. .+.+..-...++||-++. ..+.+..+....+++..++..|.. . .......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999875 247888889999998875 455777777767888888876531 0 12346789
Q ss_pred HHHHHHhcCCcchhHHHHhcCchHHHHHHhcc-------C---chhHHHHHHHHHHcCC-cHHHH--------------H
Q 048793 524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDV-------L---PEESVTILEAVVKRGG-LTAIV--------------A 578 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~-------~---~~~~~~aL~~L~~l~~-~~e~~--------------~ 578 (683)
+.++||+..+......--..+.++.|+.+|.. . ......++..|.++.- +.... .
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 99999997765443332334556666655431 1 1124455555555421 11110 0
Q ss_pred HcCchHHHHHHHhc----CC----hHHHHHHHHHHHHHHhcCCchHHHHHHhc----------------CCcHHHHHHHh
Q 048793 579 AYNTIKKLCILLRE----GS----DTSRESAAATLVTICRKGGSEMVADIAAV----------------PGIERVIWELM 634 (683)
Q Consensus 579 ~~g~v~~Lv~lL~~----~s----~~~ke~A~~aL~~L~~~~~~~~~~~~~~~----------------~G~~~~L~~Ll 634 (683)
....+..|+.+|.. .. ...----+.+|..+|..+ ...+..++. ..+--.|+.|+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~--~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm 317 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA--REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM 317 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc--HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence 00125566666542 21 122333455566666643 223443432 34666788888
Q ss_pred hcCCHHHHHHHHHHHHHHHh
Q 048793 635 ESGTARARRKAAALLRILRR 654 (683)
Q Consensus 635 ~~~~~~~k~kA~~lL~~l~~ 654 (683)
.+..+.+|.-++.+|-.|.+
T Consensus 318 t~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 318 TSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred CCCCchHHHHHHHHHHHHHh
Confidence 88889999999999988876
No 124
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=1.1 Score=48.70 Aligned_cols=237 Identities=16% Similarity=0.100 Sum_probs=150.1
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC------chh----HHHHhcc
Q 048793 389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL------EAN----KTRIMET 458 (683)
Q Consensus 389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~------~~~----k~~I~~~ 458 (683)
....+..+..+|.-. +---.+++.++++.|+.||.+. +.++....+..|..|... ++. -..+++.
T Consensus 101 Lhd~IQ~mhvlAt~P-dLYp~lveln~V~slL~LLgHe----NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg 175 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMP-DLYPILVELNAVQSLLELLGHE----NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG 175 (536)
T ss_pred HHHHHHHHHhhhcCh-HHHHHHHHhccHHHHHHHhcCC----CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc
Confidence 345667777777643 4556788999999999999999 999988888888888632 122 2345565
Q ss_pred cCcHHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhhcCC-C-hhHHHHHHHHHHHh
Q 048793 459 EGALNGVIEVLRSG-----ATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGG-P-TSSKRDALVAILNL 530 (683)
Q Consensus 459 ~G~I~~Lv~lL~~~-----~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~-~-~~~~~~A~~aL~nL 530 (683)
++++.||+-+..= .......++.+.+-|+...+ +.+..+++ .|.+.-|..-+... . ...+..|..+|.-+
T Consensus 176 -~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLail 253 (536)
T KOG2734|consen 176 -QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAIL 253 (536)
T ss_pred -cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence 8899998877631 01334567777888887765 46677777 68888877755443 2 34667788888877
Q ss_pred cCCc-chhHHHHhcCchHHHHHHhc----cC------chhHHH---HHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChH
Q 048793 531 AGDR-ETVGRLVERGIVEIVAEAMD----VL------PEESVT---ILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDT 596 (683)
Q Consensus 531 s~~~-~n~~~iv~aG~V~~Lv~lL~----~~------~~~~~~---aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~ 596 (683)
-.+. +|+.....-.+|..|++-+. .+ .+..+. +|+.+.....+.+-.....++. |..++......
T Consensus 254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq-Lm~Lmlr~Kk~ 332 (536)
T KOG2734|consen 254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ-LMNLMLREKKV 332 (536)
T ss_pred hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH-HHHHHHHHHHH
Confidence 6654 58888888999999998775 11 122333 3333333333333333323343 44555444666
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHH
Q 048793 597 SRESAAATLVTICRKGGSEMVADIAAVPGIERVIWEL 633 (683)
Q Consensus 597 ~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~L 633 (683)
.+..|..+|-..-.+........-+.+.++...+..+
T Consensus 333 sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 333 SRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence 7778888887776654422222223344444444443
No 125
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.00 E-value=0.3 Score=50.80 Aligned_cols=221 Identities=13% Similarity=0.096 Sum_probs=152.6
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHH
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGA-TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLM 509 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~-~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv 509 (683)
++-++--|+.+|.+|....+.|..+.....+-..+++++++.. ..+.+-++.-+++-|+........|-...+.|.-|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 5556778999999999998888877655457778999998632 378889999999999998887766666567889999
Q ss_pred HhhcCCC-hhHHHHHHHHHHHhcCCc--chhHHHHhcCchHHHHHHhccC----chh---HHHHHHHHHH----cCCcHH
Q 048793 510 DLVKGGP-TSSKRDALVAILNLAGDR--ETVGRLVERGIVEIVAEAMDVL----PEE---SVTILEAVVK----RGGLTA 575 (683)
Q Consensus 510 ~lL~~~~-~~~~~~A~~aL~nLs~~~--~n~~~iv~aG~V~~Lv~lL~~~----~~~---~~~aL~~L~~----l~~~~e 575 (683)
.+.+... ..+.+-++.++.|++.-. +....+.-.|-+..-++.|.+. ++. .+..-..|.+ ++....
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9988654 457788999999998832 3455566666666667766532 221 2222222221 111111
Q ss_pred HHHH-----------------------------cCchHHHHHHHhcCChH-HHHHHHHHHHHHHhcCCchHHHHHHhcCC
Q 048793 576 IVAA-----------------------------YNTIKKLCILLREGSDT-SRESAAATLVTICRKGGSEMVADIAAVPG 625 (683)
Q Consensus 576 ~~~~-----------------------------~g~v~~Lv~lL~~~s~~-~ke~A~~aL~~L~~~~~~~~~~~~~~~~G 625 (683)
-..+ ..-+..|.++++...+. .-..|+.=+.++.+..++ ...++...|
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE--~~~vl~Kyg 399 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE--INAVLSKYG 399 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch--HHHHHHHhh
Confidence 1110 11244556666655444 335567777777776654 466788899
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793 626 IERVIWELMESGTARARRKAAALLRILR 653 (683)
Q Consensus 626 ~~~~L~~Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
+-..+.+|+.+.++++|-.|...++.+=
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999998887763
No 126
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.19 Score=56.83 Aligned_cols=266 Identities=11% Similarity=0.066 Sum_probs=153.1
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
-.+|.++++.++. ++..|..|+.++..+.-.. +...+... -.++.|..+-... ++++|.+.+.+|.-|-...
T Consensus 174 ~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~----~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 174 IMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDE----DPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred HhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHHHHhc
Confidence 4678899999999 9999999999987765533 23333332 4566666666666 9999999999988775432
Q ss_pred hhHHHHhc-ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhh-cccHHHHHHh----------hcC-CC
Q 048793 450 ANKTRIME-TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRK-TRVVKGLMDL----------VKG-GP 516 (683)
Q Consensus 450 ~~k~~I~~-~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~-~G~i~~Lv~l----------L~~-~~ 516 (683)
.. +++- -.+.++-++..-+.. +.++.-.||.....++..+-.+..+... ...||.|+.= |++ ++
T Consensus 247 ~d--kl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 247 PD--KLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE 323 (885)
T ss_pred HH--hcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence 22 2221 125566666655555 6778888999999999877444444321 2456665542 220 00
Q ss_pred ---------------------------------------------hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHH
Q 048793 517 ---------------------------------------------TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAE 551 (683)
Q Consensus 517 ---------------------------------------------~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~ 551 (683)
-..++..+.+|--|+. +.....++.++.
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~P 396 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLP 396 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHH
Confidence 0112222222222211 122334555555
Q ss_pred HhccC--ch---hHHHHHHHHHHcC-CcHHHHHHc--CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhc
Q 048793 552 AMDVL--PE---ESVTILEAVVKRG-GLTAIVAAY--NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAV 623 (683)
Q Consensus 552 lL~~~--~~---~~~~aL~~L~~l~-~~~e~~~~~--g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~ 623 (683)
+|... .+ ..+.++-+|..++ |+-.+.... .-+|.|+.+|....+-+|.-.+|+|..-+..--.....+.+
T Consensus 397 lLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-- 474 (885)
T KOG2023|consen 397 LLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-- 474 (885)
T ss_pred HHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--
Confidence 55421 11 1333333333322 222332221 13677888888899999999999976654421111111111
Q ss_pred CCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 624 PGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 624 ~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
..++..|..-+-+++.++++.|.+.+..+-+.
T Consensus 475 ~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 475 KPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 12333344446678999999999999888763
No 127
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.91 E-value=0.0081 Score=50.23 Aligned_cols=48 Identities=21% Similarity=0.382 Sum_probs=36.7
Q ss_pred CcccccccccCCCC-ceec-CCccccchhhHHHHHhc--CCCCCCCCCCccC
Q 048793 275 ADFRCPISLELMRN-PVVV-ATGQTYDRQSISLWIES--GHNTCPKTGQTLA 322 (683)
Q Consensus 275 ~~f~CPis~~~m~d-Pv~~-~~g~ty~r~~I~~w~~~--g~~~cP~~~~~l~ 322 (683)
-+-.||.|...-.| |++. .|||.|-..||.+|++. +..+||.||++..
T Consensus 31 fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 31 FDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34457777655545 6555 99999999999999985 4579999998754
No 128
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.83 E-value=0.0039 Score=67.51 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=43.9
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhc----CCCCCCCCCCccCCCC
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIES----GHNTCPKTGQTLAHTN 325 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~----g~~~cP~~~~~l~~~~ 325 (683)
++..|-+|.++-.||+...|.|+|||-||.++... .+-+||.|..+|+.+.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 45789999999999999999999999999998752 3469999998887653
No 129
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0041 Score=71.37 Aligned_cols=47 Identities=28% Similarity=0.588 Sum_probs=42.1
Q ss_pred CCcccccccccCCCC-----ceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 274 PADFRCPISLELMRN-----PVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 274 p~~f~CPis~~~m~d-----Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
..+-.|+||.|.|.. |-.++|||.|...|+.+|+++ ..+||.|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 346789999999999 788999999999999999998 78999999743
No 130
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0053 Score=62.57 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=43.2
Q ss_pred cccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793 278 RCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT 324 (683)
Q Consensus 278 ~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~ 324 (683)
.|+||.+-|.-||..+|+|.||--||+.-...+..+||+|+.++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999998877788999999998765
No 131
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.84 Score=47.68 Aligned_cols=233 Identities=15% Similarity=0.161 Sum_probs=144.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHH--HHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALL--ARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~L--v~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
+.+..+.++..+... |.++...|...|..++.... .-..+.+......+ +.+--.. +.-++...+..+..+.
T Consensus 126 NaeilklildcIgge-ddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc----ndiaRvRVleLIieif 199 (524)
T KOG4413|consen 126 NAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC----NDIARVRVLELIIEIF 199 (524)
T ss_pred hhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh----hhHHHHHHHHHHHHHH
Confidence 556778888888877 88888999999998887543 55556555444332 2222233 4445555666666654
Q ss_pred -cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC--hhHHHHH
Q 048793 447 -ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP--TSSKRDA 523 (683)
Q Consensus 447 -~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~--~~~~~~A 523 (683)
..++.......+ |.+..|..=|+...+.-++.++......|+..+..+..+.. .|.|..+-.++...+ |-.+-.+
T Consensus 200 SiSpesaneckkS-GLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfra 277 (524)
T KOG4413|consen 200 SISPESANECKKS-GLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRA 277 (524)
T ss_pred hcCHHHHhHhhhh-hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHH
Confidence 455555555566 88888877777534677889999999999999999999888 799999999886433 2233223
Q ss_pred HHHHHHhcCCcchhHHHHhcCchHHHH-------HHhc-cCchhHHHHHHHHHHcCCcHHHHHHc--CchHHHHHHHh--
Q 048793 524 LVAILNLAGDRETVGRLVERGIVEIVA-------EAMD-VLPEESVTILEAVVKRGGLTAIVAAY--NTIKKLCILLR-- 591 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv-------~lL~-~~~~~~~~aL~~L~~l~~~~e~~~~~--g~v~~Lv~lL~-- 591 (683)
+.....+- ..++.-.+.+...+..++ +++. .+++..+.|+-.+..+.++.++..-. -+-|..-.++.
T Consensus 278 lmgfgkff-gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllara 356 (524)
T KOG4413|consen 278 LMGFGKFF-GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARA 356 (524)
T ss_pred HHHHHHHh-cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHH
Confidence 33322221 223333333333333333 3332 24566777777777777776665443 23334434332
Q ss_pred --cCChHHHHHHHHHHHHHHh
Q 048793 592 --EGSDTSRESAAATLVTICR 610 (683)
Q Consensus 592 --~~s~~~ke~A~~aL~~L~~ 610 (683)
.....-++.+..+|.+++.
T Consensus 357 fdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 357 FDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred hcccccchHHHHHHHHHHhhc
Confidence 2223345777888888875
No 132
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.0065 Score=61.80 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=39.9
Q ss_pred ccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 277 FRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 277 f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
|.|-||.+.+.+||++.|||+||..|--+.++. +..|++|++..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc
Confidence 889999999999999999999999998888876 56899998874
No 133
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.50 E-value=0.19 Score=47.51 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=97.1
Q ss_pred HHHHhCcHHHHHHhhCCCCCC--CChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCC-CHHHHHHHHHHH
Q 048793 409 CIAEAGAIALLARHLGPDTAS--RLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGA-TWEAKGNAAATI 485 (683)
Q Consensus 409 ~i~~~G~Ip~Lv~lL~s~~~~--~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~-~~~~~~~Aa~~L 485 (683)
.+...||++.|+.++.++... -..++...++.++.+|-.+.-.-...... .+|..++..+.... +..+.+.|.+.|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~-~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSD-SFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccH-HHHHHHHHHHccccccchHHHHHHHHH
Confidence 456789999999999887210 01367788999999998776555666665 79999999998653 578899999999
Q ss_pred HHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 486 FSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 486 ~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
.++..........+...=-++.|+..|...+++...+|+..|-.|-.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99998888766666646679999999999888888888887777654
No 134
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.24 Score=58.51 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHH----hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcH
Q 048793 387 EAANDAVYELRSLSKTDSDSRACIAE----AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGAL 462 (683)
Q Consensus 387 ~~~~~A~~~L~~La~~~~~nr~~i~~----~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I 462 (683)
+-..-++.+|+++.+.+++-...+.. .|-.+.+..+|.+. .++.+|..|+.++..+..+.+--..|+.. |.+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL 1815 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLATANKECVTDLATC-NVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHhcccHHHHHHHhh-hHH
Confidence 34566888999999888854444432 37788888888765 27889999999998888888888888887 899
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHHHHhcCC
Q 048793 463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAILNLAGD 533 (683)
Q Consensus 463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~ 533 (683)
..|..+|.+. +..|+.+..+|+.|++..+..+...+ .|++.-+..++...+ ++.+..|+..|..|..+
T Consensus 1816 ~~LL~lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1816 TTLLTLLHSQ--PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHHHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 9999999875 78999999999999999987777777 788888888886554 66778888888888654
No 135
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0093 Score=63.09 Aligned_cols=47 Identities=17% Similarity=0.455 Sum_probs=39.6
Q ss_pred ccccccccCCCC--ce-ecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 277 FRCPISLELMRN--PV-VVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 277 f~CPis~~~m~d--Pv-~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
+.|-||+|-+.+ -+ ++||+|.|=..||..|+.+...+||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 799999988854 44 569999999999999999866789999986543
No 136
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.46 E-value=0.013 Score=58.69 Aligned_cols=46 Identities=35% Similarity=0.489 Sum_probs=38.6
Q ss_pred CcccccccccCCCCceec-CCccccchhhHHHHHhcC-CCCCCCCCCc
Q 048793 275 ADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESG-HNTCPKTGQT 320 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g-~~~cP~~~~~ 320 (683)
-+++||||.....+||+- .|||.|+|..|+..+... ...||+-+-.
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 457999999999999976 999999999999998642 3469987754
No 137
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.46 E-value=0.34 Score=54.37 Aligned_cols=258 Identities=16% Similarity=0.175 Sum_probs=150.6
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..|..++..|++. .+.++..|+.....+++--.. --+.+...|.| |-.-|... ++++.-..+.|++.+-..
T Consensus 604 ~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~----ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 604 MIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED----YPEVLGSILKAICSIYSV 676 (975)
T ss_pred HHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc----cHHHHHHHHHHHHHHhhh
Confidence 3567788889998 899999999877777643211 12334445543 55666666 888887777777766432
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
-..+..---..|.+|.|.-+|++. ...+..+....+..++.......-..+=..+--.|+++|++.+.+.+.+|...+.
T Consensus 677 ~~~~~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 677 HRFRSMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred hcccccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 222111111128899999999988 5888899999998888765432222221234456888999889999999988888
Q ss_pred HhcCCcchhHHHHhcCchHHHHHHhccCchhHHH-----HHHHHHHcCCcHHHHHHcCchHHHHHHHhc---CChHHHHH
Q 048793 529 NLAGDRETVGRLVERGIVEIVAEAMDVLPEESVT-----ILEAVVKRGGLTAIVAAYNTIKKLCILLRE---GSDTSRES 600 (683)
Q Consensus 529 nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~-----aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~---~s~~~ke~ 600 (683)
.++.--. -..++..|++-|. ..+...+ |+++.+..| |-...|..+|.. ....+|.
T Consensus 756 ~Is~aiG------PqdvL~~LlnnLk-vqeRq~RvctsvaI~iVae~c---------gpfsVlP~lm~dY~TPe~nVQn- 818 (975)
T COG5181 756 CISRAIG------PQDVLDILLNNLK-VQERQQRVCTSVAISIVAEYC---------GPFSVLPTLMSDYETPEANVQN- 818 (975)
T ss_pred hHHhhcC------HHHHHHHHHhcch-HHHHHhhhhhhhhhhhhHhhc---------CchhhHHHHHhcccCchhHHHH-
Confidence 7764211 1122223333332 1222222 223222222 223334344443 2233333
Q ss_pred HHHHHHHHHhcCCc--hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793 601 AAATLVTICRKGGS--EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA 657 (683)
Q Consensus 601 A~~aL~~L~~~~~~--~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~ 657 (683)
++|.++|..... ......+ ..+.|+|..-+.+.++--|.-|..+++++.--..
T Consensus 819 --GvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 819 --GVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 334445542211 1111111 3456777778888888889999999999876433
No 138
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.01 Score=60.34 Aligned_cols=47 Identities=15% Similarity=0.458 Sum_probs=37.8
Q ss_pred ccccccccCC--CCce-ecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 277 FRCPISLELM--RNPV-VVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 277 f~CPis~~~m--~dPv-~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
.-|-||++=+ .|.+ .+||.|.|-+.||++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4699997544 3555 559999999999999998656789999988754
No 139
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.013 Score=59.01 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=41.9
Q ss_pred CCCcccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793 273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPKTGQTLA 322 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~ 322 (683)
-..+-.||+|++.-+.|.++ +|||.||--||..-+.. ...+||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34667899999999999988 69999999999998763 3579999997643
No 140
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.012 Score=58.06 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=33.2
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHh
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIE 308 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~ 308 (683)
.|-+.-+|.+|+|..+|||+++.||.|||.+|-+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 4555669999999999999999999999999999984
No 141
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.016 Score=57.33 Aligned_cols=53 Identities=15% Similarity=0.411 Sum_probs=46.3
Q ss_pred CcccccccccCCCCce----ecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793 275 ADFRCPISLELMRNPV----VVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT 328 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv----~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p 328 (683)
..|.||+|.+.+++.+ +-+|||.++..|.++.+.. ...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 6799999999988764 5599999999999998874 779999999999888775
No 142
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.03 E-value=0.066 Score=41.05 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793 386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 386 ~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL 445 (683)
+.+|..|++.|..++......-.. ....++|.|+.+|.+. +..++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~----~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD----DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS----SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC----CHHHHHHHHHHHhcC
Confidence 467899999999988766533222 3457899999999888 889999999999875
No 143
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=1.3 Score=53.54 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=125.3
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcc-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHH
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMET-EGALNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKG 507 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~-~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~ 507 (683)
+..+|..+..+|..++..+......... ......|...+++. +..++..++.+|..|-.. .++...+.. .|+-
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i~k---~I~E 742 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLIPK---LIPE 742 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHHHH---HHHH
Confidence 7789999999999988764333222211 01223333334433 345666666666655433 345555543 4555
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcC------chHHHHHHhccC--ch---hHHHHHHHHHHcCCcHHH
Q 048793 508 LMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERG------IVEIVAEAMDVL--PE---ESVTILEAVVKRGGLTAI 576 (683)
Q Consensus 508 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG------~V~~Lv~lL~~~--~~---~~~~aL~~L~~l~~~~e~ 576 (683)
++=.+++-+...++.|..+|..|+. .....+.| .|...+.++..+ .+ .+...+-.+..+......
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5555577778899999999999883 22222222 444444444422 11 122212222221111111
Q ss_pred HHHc----CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793 577 VAAY----NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652 (683)
Q Consensus 577 ~~~~----g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l 652 (683)
.... +-+..+...|..+++.....|++.+..++...+.......+ .-+++.+..+++..+..++.|+..||+.|
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~--~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL--EELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1111 11233333456789999999999999999877765544433 34788899999999999999999999877
Q ss_pred Hh
Q 048793 653 RR 654 (683)
Q Consensus 653 ~~ 654 (683)
-+
T Consensus 897 ir 898 (1176)
T KOG1248|consen 897 IR 898 (1176)
T ss_pred HH
Confidence 54
No 144
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.017 Score=60.37 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=39.2
Q ss_pred CcccccccccCC-CCc------------eecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 275 ADFRCPISLELM-RNP------------VVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 275 ~~f~CPis~~~m-~dP------------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
+|-.|-||++-| .-| --+||||.+--+|...|+++ ..|||.||.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 677899999764 333 57899999999999999997 77999999884
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.96 E-value=0.008 Score=64.37 Aligned_cols=42 Identities=19% Similarity=0.563 Sum_probs=35.8
Q ss_pred cccccccCCCCce----ecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 278 RCPISLELMRNPV----VVATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 278 ~CPis~~~m~dPv----~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
+||+|++-|.+-| .+.|+|+|--+|+++|++ .+||+||--..
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 8999999998876 559999999999999965 48999985443
No 146
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.95 E-value=0.63 Score=46.84 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhcccCch--hHHHHhcccCcHH
Q 048793 387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSILEA--NKTRIMETEGALN 463 (683)
Q Consensus 387 ~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~~~~--~k~~I~~~~G~I~ 463 (683)
.-..+|+.-|..++.+. +.|..+.++..--.|-.+|..+.. +...-++-.++.++..|...++ .-.-+... ++||
T Consensus 94 nRVcnaL~LlQcvASHp-dTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T-eIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHP-DTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT-EIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcCc-chHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh-hhHH
Confidence 34567887777777765 588888888765556677765422 2356688889999999986543 23444566 8999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhc-------ccHHHHH-HhhcCCChhHHHHHHHHHHHhcCCcc
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKT-------RVVKGLM-DLVKGGPTSSKRDALVAILNLAGDRE 535 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~-------G~i~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
..++.+..| +...+..|+.++..+-.+|.+-.-|.... -.+..+| .+.+.++.+..++++++..+|+.++.
T Consensus 172 lCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 172 LCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 999999999 78999999999988877765433333222 2333333 34455778899999999999999886
Q ss_pred hhHHH
Q 048793 536 TVGRL 540 (683)
Q Consensus 536 n~~~i 540 (683)
.|..+
T Consensus 251 ar~aL 255 (293)
T KOG3036|consen 251 ARAAL 255 (293)
T ss_pred HHHHH
Confidence 55544
No 147
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=1.3 Score=51.03 Aligned_cols=198 Identities=11% Similarity=0.080 Sum_probs=122.8
Q ss_pred CcHHHHHHhhCCCC---CCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 414 GAIALLARHLGPDT---ASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~---~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
+++|.|+.+|...- +.++...-..|-.+|.-++..- +..|+.. +++.+-+-+++. +..-++.|+-++.+.-.
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~~--Vl~Fiee~i~~p-dwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVPH--VLPFIEENIQNP-DWRNREAAVMAFGSILE 393 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchhh--hHHHHHHhcCCc-chhhhhHHHHHHHhhhc
Confidence 78999999887631 1123445555555555444211 1234432 555555566677 78999999999988877
Q ss_pred CcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcc-hh-HHHHhcCchHHHHHHhccCchhHHHHHHHHH
Q 048793 491 VHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRE-TV-GRLVERGIVEIVAEAMDVLPEESVTILEAVV 568 (683)
Q Consensus 491 ~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~-~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~ 568 (683)
.++.....--..+++|.++.++.+.+--++..++|+|..++.+-. -+ ....-.+.++.|++=|.+.+.++.++.+.+.
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~ 473 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFI 473 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHH
Confidence 665333222236899999999997777788999999999987532 21 2223356777788878877878888777776
Q ss_pred HcCCc-HHHHHHcC-------chHHHHHHHh----c---CChHHHHHHHHHHHHHHhcCCchH
Q 048793 569 KRGGL-TAIVAAYN-------TIKKLCILLR----E---GSDTSRESAAATLVTICRKGGSEM 616 (683)
Q Consensus 569 ~l~~~-~e~~~~~g-------~v~~Lv~lL~----~---~s~~~ke~A~~aL~~L~~~~~~~~ 616 (683)
.++.. .+....-| ..+.++.-|- . .....|-.|-.+|..|-+++++.+
T Consensus 474 ~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 474 SLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred HHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence 65522 11111111 1223333222 1 223456778888888888777543
No 148
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.013 Score=60.45 Aligned_cols=52 Identities=25% Similarity=0.473 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 270 DANVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 270 ~~~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
....|+.-.||+|.+--.+|..+ .+|..||-.||-.+.. .+.+||+|+-|..
T Consensus 294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 45667778999999888888766 6699999999999998 4889999998754
No 149
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.83 E-value=0.11 Score=45.49 Aligned_cols=67 Identities=22% Similarity=0.235 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhc
Q 048793 389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIME 457 (683)
Q Consensus 389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~ 457 (683)
+...++.|.+++..+..++..+.+.|+||.++..-.-. ..+|-++|.|+.++.||+.+ ++|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD--~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID--DHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC--cccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45667889999999999999999999999999875432 23899999999999999975 577776654
No 150
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.66 E-value=0.72 Score=52.90 Aligned_cols=258 Identities=14% Similarity=0.159 Sum_probs=149.5
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
.+..++..|.+. ++.++..|+..+..++.--.. --..+...|.| |-..|... ++++.-..+.||..+...-
T Consensus 800 i~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee----ypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 800 ICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE----YPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred HHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc----cHHHHHHHHHHHHHHHHhc
Confidence 345566778888 899999999988887753221 12234455654 66778877 8988877777766654211
Q ss_pred -hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793 450 -ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528 (683)
Q Consensus 450 -~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
-.+..==- .|.+|.|.-+|++. ...+++++...+..++..........+=..+--.|+++|+..+...+.+|...+.
T Consensus 873 gm~km~pPi-~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 873 GMTKMTPPI-KDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred cccccCCCh-hhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11110001 27899999999988 5899999999999998754322222111224456888888888889999998888
Q ss_pred HhcCCcchhHHHHhcCchHHHHHHhccCchhHH-----HHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHH
Q 048793 529 NLAGDRETVGRLVERGIVEIVAEAMDVLPEESV-----TILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAA 603 (683)
Q Consensus 529 nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~-----~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~ 603 (683)
.++.-- --..++..|++-|. ..+... -|+++.+..|+- ...+|+|..=-+.....+|.-...
T Consensus 951 ~IakaI------GPqdVLatLlnnLk-vqeRq~RvcTtvaIaIVaE~c~p------FtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen 951 YIAKAI------GPQDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCGP------FTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred HHHHhc------CHHHHHHHHHhcch-HHHHHhchhhhhhhhhhhhhcCc------hhhhHHHHhhccCchhHHHHhHHH
Confidence 775421 01122233333332 122222 233333322221 122344433222333344443444
Q ss_pred HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
+|..+...-++ .....+ ..+.|+|..-+.+.+.--|.-|..+++++.-
T Consensus 1018 alsf~Feyige-mskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1018 ALSFMFEYIGE-MSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHH-HhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 43333322221 111111 3467888888888888888999999999875
No 151
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=2.5 Score=49.20 Aligned_cols=260 Identities=12% Similarity=0.094 Sum_probs=147.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC------
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL------ 448 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~------ 448 (683)
.|..-|.++ +.-++.-|+.+|.+++...- .| ...|-+.++|++. ++.++..|+.++..+-.-
T Consensus 111 slknDL~s~-nq~vVglAL~alg~i~s~Em-ar------dlapeVe~Ll~~~----~~~irKKA~Lca~r~irK~P~l~e 178 (866)
T KOG1062|consen 111 SLKNDLNSS-NQYVVGLALCALGNICSPEM-AR------DLAPEVERLLQHR----DPYIRKKAALCAVRFIRKVPDLVE 178 (866)
T ss_pred HHHhhccCC-CeeehHHHHHHhhccCCHHH-hH------HhhHHHHHHHhCC----CHHHHHHHHHHHHHHHHcCchHHH
Confidence 355667777 77788888888888865332 22 4567778888888 889998888877766321
Q ss_pred ---chhHHHHh-cccC----cHHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcCcchhhHHhhhcc--------cHHH
Q 048793 449 ---EANKTRIM-ETEG----ALNGVIEVLRSGAT-----WEAKGNAAATIFSLSGVHAHRKTLGRKTR--------VVKG 507 (683)
Q Consensus 449 ---~~~k~~I~-~~~G----~I~~Lv~lL~~~~~-----~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G--------~i~~ 507 (683)
...+..+- ++.| ++..+.++++.+.+ ......-..+|.++....-..+.= .+| -+--
T Consensus 179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd--v~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD--VHGISDPFLQIRILR 256 (866)
T ss_pred HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC--ccCCCchHHHHHHHH
Confidence 11222222 1123 34444444443211 112233444555554321100000 012 1233
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhcCCcc---hhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCch-
Q 048793 508 LMDLVKGGPTSSKRDALVAILNLAGDRE---TVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTI- 583 (683)
Q Consensus 508 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v- 583 (683)
+.++|..++++........|..++.+.+ |...++=..+|..+..+.. +.+..+.|+.+|...-.+.+.-..+-++
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS-NSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC-CchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 5566777788888888888888887543 6666666666777766654 4556666666666533222211111111
Q ss_pred -----------------HHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHH-HH
Q 048793 584 -----------------KKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARR-KA 645 (683)
Q Consensus 584 -----------------~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~-kA 645 (683)
..++..|+..++..|..|...+..|...+ .++.+ ++-|+..+.+.++..|. -|
T Consensus 336 ~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~---Nv~~m------v~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES---NVRVM------VKELLEFLESSDEDFKADIA 406 (866)
T ss_pred hHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc---cHHHH------HHHHHHHHHhccHHHHHHHH
Confidence 35556677778888888888888877632 23433 45567777777888874 44
Q ss_pred HHHHHHHHhhhcc
Q 048793 646 AALLRILRRWAAG 658 (683)
Q Consensus 646 ~~lL~~l~~~~~~ 658 (683)
..+...--+|.+.
T Consensus 407 s~I~~laEkfaP~ 419 (866)
T KOG1062|consen 407 SKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHHhcCCc
Confidence 4444444445544
No 152
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=3.6 Score=47.69 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=135.4
Q ss_pred CcHHHHHHhhCCCCCCCCh-hhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC
Q 048793 414 GAIALLARHLGPDTASRLP-NLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGV 491 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~-~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~ 491 (683)
+.|+.|+.-...+ .+ .+++.++.+|+-+|.+-+-...+-....++-.++.-.+ .+.+..+|-.|..+|.+--..
T Consensus 129 ~li~~lv~nv~~~----~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef 204 (859)
T KOG1241|consen 129 ELIVTLVSNVGEE----QASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEF 204 (859)
T ss_pred HHHHHHHHhcccc----cchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHH
Confidence 4445555444443 33 48888999999998764333333333356666666554 344678888888888865321
Q ss_pred -------cchhhHHhh-------------hcccHHHHHHh-----------------------hcCCChhHHHHHHHHHH
Q 048793 492 -------HAHRKTLGR-------------KTRVVKGLMDL-----------------------VKGGPTSSKRDALVAIL 528 (683)
Q Consensus 492 -------~~~~~~i~~-------------~~G~i~~Lv~l-----------------------L~~~~~~~~~~A~~aL~ 528 (683)
+.+|.-|.. ..-++.-|+++ ++++++++.-.++.-=.
T Consensus 205 ~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWs 284 (859)
T KOG1241|consen 205 TKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWS 284 (859)
T ss_pred HHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111111100 01133334433 23455555555554444
Q ss_pred HhcCCcc-----------------hhHHHHh--cCchHHHHHHhcc-C----ch-----h-HHHHHHHHHHcCCcHHHHH
Q 048793 529 NLAGDRE-----------------TVGRLVE--RGIVEIVAEAMDV-L----PE-----E-SVTILEAVVKRGGLTAIVA 578 (683)
Q Consensus 529 nLs~~~~-----------------n~~~iv~--aG~V~~Lv~lL~~-~----~~-----~-~~~aL~~L~~l~~~~e~~~ 578 (683)
++|...- ++..+.. .+++|.|+++|.. + .+ + +..||..++..+++. .+.
T Consensus 285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~ 363 (859)
T KOG1241|consen 285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVP 363 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-chh
Confidence 4543110 1111111 2677889998862 1 11 1 555666666666543 111
Q ss_pred HcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 579 AYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 579 ~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
-..|-+-.-+++.+-+.++.|+-++-.+-.+-.......+ ..+++|.++.+..+.+--+|+.|+|.|-.+.++-
T Consensus 364 --~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i--V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 364 --HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI--VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred --hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH--HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 1233333356778889999999998887764333333333 4688999999999999999999999998887743
No 153
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.36 Score=54.60 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=63.7
Q ss_pred HHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHH
Q 048793 539 RLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMV 617 (683)
Q Consensus 539 ~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~ 617 (683)
.++..|+-.++|.=|.++ -++...|+..++.++.+.-... ...+..|+.++...-..+|..|..+|..|+.+..-
T Consensus 368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i--- 443 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI--- 443 (823)
T ss_pred ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee---
Confidence 356667777777766543 3557777777777664322211 12467888888888888999999999999886321
Q ss_pred HHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793 618 ADIAAVPGIERVIWELMESGTARARRKAAALLRI 651 (683)
Q Consensus 618 ~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~ 651 (683)
+..-++.+..-+.+.+.++|+.+..+|++
T Consensus 444 -----~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 444 -----REEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred -----cHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 11223444444555555555555544443
No 154
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=0.21 Score=55.20 Aligned_cols=164 Identities=12% Similarity=0.113 Sum_probs=119.0
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
.++.|++.|+.+ +..+.--+...++++.-.-..-+..+.+.|.|..|++++.+. |..+|.+..|.|..+--+.++
T Consensus 432 I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK----DdaLqans~wvlrHlmyncq~ 506 (743)
T COG5369 432 IVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK----DDALQANSEWVLRHLMYNCQK 506 (743)
T ss_pred hHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc----hhhhhhcchhhhhhhhhcCcc
Confidence 466777777654 444445567778887766665788999999999999999998 889999999999999766433
Q ss_pred --HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----cchhhHHhh---hcccHHHHHHhhcCCChhHHHH
Q 048793 452 --KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV----HAHRKTLGR---KTRVVKGLMDLVKGGPTSSKRD 522 (683)
Q Consensus 452 --k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~----~~~~~~i~~---~~G~i~~Lv~lL~~~~~~~~~~ 522 (683)
+-+.... -+++.++.+.... +..++.....+|.|+..+ ++.+..... ..=..+.|++.+...+|-....
T Consensus 507 ~ekf~~Lak-ig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 507 NEKFKFLAK-IGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred hhhhhhHHh-cCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 3344444 5788899998776 688999999999999753 222222221 0114556777777777766666
Q ss_pred HHHHHHHhcCCcchhHHHHh
Q 048793 523 ALVAILNLAGDRETVGRLVE 542 (683)
Q Consensus 523 A~~aL~nLs~~~~n~~~iv~ 542 (683)
.+-.|.+++..+++...++.
T Consensus 585 ~~yilv~~aa~d~~l~~~V~ 604 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQ 604 (743)
T ss_pred hHHHHHHHHhccchHHHHHH
Confidence 78889999888888766653
No 155
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.10 E-value=0.02 Score=60.76 Aligned_cols=34 Identities=12% Similarity=0.443 Sum_probs=30.0
Q ss_pred CCcccccccccCCCCceecCCccccchhhHHHHH
Q 048793 274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWI 307 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~ 307 (683)
.+++.||||...++||++++|||++||.|-..-.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 4789999999999999999999999999865443
No 156
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.65 E-value=0.027 Score=53.81 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=38.5
Q ss_pred ccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 277 FRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 277 f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
|.|-||.+-+..||++.|||.||-.|-.+-.+. ..+|-+|++..
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 999999999999999999999999997777665 56888888653
No 157
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=1.2 Score=51.67 Aligned_cols=264 Identities=13% Similarity=0.100 Sum_probs=150.8
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
....|.+.+++. ++.+|..|+-...++=. .+.+.....|.++.|-+++.+. ++.+..+|+.+|..+...+.+
T Consensus 122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~----~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS----NPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHhccCC-ChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC----CchHHHHHHHHHHHHHHhCCC
Confidence 455677888888 89999988887776633 3567777889999999999987 999999999999998644322
Q ss_pred --HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 452 --KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 452 --k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
...+.. -.+..++..|..- .--.-+.+|-.|+..-.... .+....+..+...|.+.+..+.-.+..++.+
T Consensus 194 ~~~~~l~~--~~~~~lL~al~ec----~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 194 VNLLELNP--QLINKLLEALNEC----TEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCcccccH--HHHHHHHHHHHHh----hhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence 111111 1233333333322 11222344444443322111 1112345566667777777777777777777
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcC-CcHHHH-HHc---------------CchHHHHHH---
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRG-GLTAIV-AAY---------------NTIKKLCIL--- 589 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~-~~~e~~-~~~---------------g~v~~Lv~l--- 589 (683)
+.....+....+---.-++|+.++...++..--+|..+..+- ..++.. .++ -.+..+..+
T Consensus 266 ~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~ 345 (734)
T KOG1061|consen 266 LVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND 345 (734)
T ss_pred HHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence 766555544444444556666666644443333333332210 111110 000 001111111
Q ss_pred -------------HhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 590 -------------LREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 590 -------------L~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
-...+..--+.|++++..++..- .+ ..+.+..|.+++..+-+-+...+...++.+-+..
T Consensus 346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~-----e~---~~~cv~~lLell~~~~~yvvqE~~vvi~dilRky 417 (734)
T KOG1061|consen 346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA-----EQ---SNDCVSILLELLETKVDYVVQEAIVVIRDILRKY 417 (734)
T ss_pred hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----hh---hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence 11245555566777766665421 11 1678899999999887777777778888777755
Q ss_pred ccc
Q 048793 657 AGL 659 (683)
Q Consensus 657 ~~~ 659 (683)
+++
T Consensus 418 P~~ 420 (734)
T KOG1061|consen 418 PNK 420 (734)
T ss_pred CCc
Confidence 554
No 158
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.54 E-value=2.7 Score=47.61 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=108.0
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
.++.++.-+... .......++..|..++...+ -.-......+||.|...|-.+ .+++++.+..+|.+++.-.+|
T Consensus 255 llpsll~~l~~~-kWrtK~aslellg~m~~~ap-~qLs~~lp~iiP~lsevl~DT----~~evr~a~~~~l~~~~svidN 328 (569)
T KOG1242|consen 255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCAP-KQLSLCLPDLIPVLSEVLWDT----KPEVRKAGIETLLKFGSVIDN 328 (569)
T ss_pred hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhch-HHHHHHHhHhhHHHHHHHccC----CHHHHHHHHHHHHHHHHhhcc
Confidence 344444444444 45677788888888777665 333444568999999999998 999999999999999876666
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
.. |- -.+|.|++-+.... . ....+...|..-......- ..+ +=.+|-|-+=+...+...++.++.++.|+
T Consensus 329 ~d-I~---~~ip~Lld~l~dp~-~-~~~e~~~~L~~ttFV~~V~~psL---almvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 329 PD-IQ---KIIPTLLDALADPS-C-YTPECLDSLGATTFVAEVDAPSL---ALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred HH-HH---HHHHHHHHHhcCcc-c-chHHHHHhhcceeeeeeecchhH---HHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 55 32 25777888886541 1 1222333333222222111 111 11234444445555667889999999999
Q ss_pred cCCcchhHHHHhc--CchHHHHHHhccC-chh---HHHHHHHHHH
Q 048793 531 AGDRETVGRLVER--GIVEIVAEAMDVL-PEE---SVTILEAVVK 569 (683)
Q Consensus 531 s~~~~n~~~iv~a--G~V~~Lv~lL~~~-~~~---~~~aL~~L~~ 569 (683)
|.--++...+..- -.+|.|=..+.+. ++. +.+||+.+..
T Consensus 400 ~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 400 CKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 9866555444321 1223333333222 443 6667755543
No 159
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.63 Score=52.80 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=132.5
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHH---hccc---C-
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTIL---NLSI---L- 448 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~---nLs~---~- 448 (683)
|..+.... |..++..|+..|..|.....-.+. .....+..++.. +..++..|+.++. |... .
T Consensus 203 l~~~~~~~-D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~----~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 203 LIYLEHDQ-DFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDD----YEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHhcCC-CcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcch----HHHHHHHHHHHHHHHHhcCCCcccc
Confidence 65666666 888899999988887764432222 234557778777 7788887765554 3331 1
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc------------------------------------
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH------------------------------------ 492 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~------------------------------------ 492 (683)
+.+...... .+...+-+.++.. +..+|..|+.+|..+-...
T Consensus 272 e~~e~kl~D--~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 272 ESEEEKLKD--AAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhhhhHH--HHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence 122233333 3566677777665 4666666666655443221
Q ss_pred ---------------chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC
Q 048793 493 ---------------AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL 556 (683)
Q Consensus 493 ---------------~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~ 556 (683)
+....|.. .|+-.++|.=|.+.-.+++++|+..++.|+.+. .-... ++..|+++++++
T Consensus 349 sGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE 422 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE 422 (823)
T ss_pred cCccccccCchhhcccccccccc-ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH
Confidence 11223444 567778888777666789999999999998753 33322 466899999865
Q ss_pred -chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcC
Q 048793 557 -PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKG 612 (683)
Q Consensus 557 -~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~ 612 (683)
.++...|+..|..++.+ +......++.+...|...++.+|+..-..|. .|+..
T Consensus 423 ~~~VRL~ai~aL~~Is~~--l~i~eeql~~il~~L~D~s~dvRe~l~elL~-~~~~~ 476 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVH--LAIREEQLRQILESLEDRSVDVREALRELLK-NARVS 476 (823)
T ss_pred HHHHHHHHHHHHHHHHHH--heecHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCC
Confidence 34456666666554433 2122234678888888889999988777543 34443
No 160
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.31 E-value=0.3 Score=43.96 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=58.9
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL 445 (683)
..+..|+.+|..+.|+....-|+.-|..+++..+..|..+-+.|+=..+..|+.++ |++++.+|+.++..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~----d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE----DPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S----SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC----CHHHHHHHHHHHHHH
Confidence 35678899994432777788899999999999999999888899999999999999 999999999998765
No 161
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.21 E-value=1.3 Score=45.34 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhcccCc--hhHHHHhcccCcHH
Q 048793 387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSILE--ANKTRIMETEGALN 463 (683)
Q Consensus 387 ~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~--~~k~~I~~~~G~I~ 463 (683)
.-..+|+.-+..+|.+. +.|..+.++...-.|-.+|...... ....++-.++.+++.|.+.+ +.-.-+... +.+|
T Consensus 65 nRVcnaLaLlQ~vAshp-etr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~t-Eiip 142 (262)
T PF04078_consen 65 NRVCNALALLQCVASHP-ETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQT-EIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHHH-T-TTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCT-THHH
T ss_pred HHHHHHHHHHHHHHcCh-HHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhh-chHH
Confidence 34577888888888854 6999999999887888888765211 12346677888888887643 333444566 8999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc-------cHHHHHH-hhcCCChhHHHHHHHHHHHhcCCcc
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR-------VVKGLMD-LVKGGPTSSKRDALVAILNLAGDRE 535 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G-------~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
..++.++.| +.-.|..|.-++..+-.++.+-.-+..... ++..+|. +..+.+++..++.+++-..||.++.
T Consensus 143 lcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 143 LCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 999999999 789999999999998887765544443333 3333333 3355678899999999999999998
Q ss_pred hhHHHHh
Q 048793 536 TVGRLVE 542 (683)
Q Consensus 536 n~~~iv~ 542 (683)
.+..+..
T Consensus 222 ar~aL~~ 228 (262)
T PF04078_consen 222 AREALRQ 228 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876653
No 162
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.21 E-value=3.3 Score=45.57 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=92.5
Q ss_pred HHHhhCCCCCCCChhhHHHHHHHHHhcccCc----hhHHHHhcccCcHHHHHHHHhcC------CCHHHHHHHHHHHHHh
Q 048793 419 LARHLGPDTASRLPNLQVNAVTTILNLSILE----ANKTRIMETEGALNGVIEVLRSG------ATWEAKGNAAATIFSL 488 (683)
Q Consensus 419 Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~----~~k~~I~~~~G~I~~Lv~lL~~~------~~~~~~~~Aa~~L~~L 488 (683)
+..+++.. +.+-|-.|+-....+.+++ .+|+.+.++ -+.+.+-++|.++ .+.-.+..+..+|.-.
T Consensus 16 ~~~L~~~k----~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeA-VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF 90 (698)
T KOG2611|consen 16 CLKLLKGK----RDEERFAALLLVTKFVKNDDIVALNKKLVFEA-VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF 90 (698)
T ss_pred HHHHhccc----ChHHHHHHHHHHHHHhcccchhhhhhhhHHHH-hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 44455555 4555666666666666553 467778887 6678888888753 1234567788888888
Q ss_pred hcCcch--hhHHhhhcccHHHHHHhhcCC-Chh------HHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc
Q 048793 489 SGVHAH--RKTLGRKTRVVKGLMDLVKGG-PTS------SKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD 554 (683)
Q Consensus 489 s~~~~~--~~~i~~~~G~i~~Lv~lL~~~-~~~------~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~ 554 (683)
|..++- ...++ ..||.|.+++..+ +++ ...++-.+|+.++.++.+...++..|+++.+.++-.
T Consensus 91 C~~pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 91 CRVPELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hCChhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 888763 33443 4699999998754 222 668999999999999999999999999999998754
No 163
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.022 Score=57.15 Aligned_cols=53 Identities=17% Similarity=0.382 Sum_probs=42.0
Q ss_pred CcccccccccCCCCce----------ecCCccccchhhHHHHHhcCC-CCCCCCCCccCCCCCc
Q 048793 275 ADFRCPISLELMRNPV----------VVATGQTYDRQSISLWIESGH-NTCPKTGQTLAHTNLV 327 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv----------~~~~g~ty~r~~I~~w~~~g~-~~cP~~~~~l~~~~l~ 327 (683)
++-.|-+|++-+-+.+ .++|||.|---||..||--|. .|||-|++..+...+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 4568999987666555 679999999999999998775 6999999876544433
No 164
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=3.6 Score=47.97 Aligned_cols=207 Identities=15% Similarity=0.161 Sum_probs=114.0
Q ss_pred HHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc--Ccchh
Q 048793 418 LLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG--VHAHR 495 (683)
Q Consensus 418 ~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~--~~~~~ 495 (683)
.++..|+.. |..++..|+..+..|. ++.|-+.|++. |+.+|.+. +.+.+...+.-+..++. .++++
T Consensus 354 tIleCL~Dp----D~SIkrralELs~~lv-n~~Nv~~mv~e------Ll~fL~~~-d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 354 TILECLKDP----DVSIKRRALELSYALV-NESNVRVMVKE------LLEFLESS-DEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred HHHHHhcCC----cHHHHHHHHHHHHHHh-ccccHHHHHHH------HHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcch
Confidence 355667777 8889998888777765 44555555544 88888887 79999999999999985 45566
Q ss_pred hHHhh------------hcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHH
Q 048793 496 KTLGR------------KTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTI 563 (683)
Q Consensus 496 ~~i~~------------~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~a 563 (683)
+.|-. ...++..|+.++.++..+..+++...|+.-.... +...+-+.-.+.. +.++
T Consensus 422 W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~-~~~~is~e~l~qV-----------a~W~ 489 (866)
T KOG1062|consen 422 WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSED-TLLDISQEPLLQV-----------ASWC 489 (866)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhh-hhhhhhhhhHHHH-----------HHHH
Confidence 65521 0235556666665554444444444444321111 0111101111111 2222
Q ss_pred HHHHH--HcCC-c---HHHHHHcCchHHHHHHHhc--CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh
Q 048793 564 LEAVV--KRGG-L---TAIVAAYNTIKKLCILLRE--GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELME 635 (683)
Q Consensus 564 L~~L~--~l~~-~---~e~~~~~g~v~~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~ 635 (683)
++--. .+.+ + +....+...+..|-+++.+ .+..+|.+|..+|..|+....+. .. -+-.++.....
T Consensus 490 IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-~~------ri~~lI~~~~~ 562 (866)
T KOG1062|consen 490 IGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-SE------RIKQLISSYKS 562 (866)
T ss_pred hhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-HH------HHHHHHHHhcc
Confidence 22211 0111 1 1111112335566666653 56788999999999998755432 11 11233444455
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 048793 636 SGTARARRKAAALLRILRRW 655 (683)
Q Consensus 636 ~~~~~~k~kA~~lL~~l~~~ 655 (683)
+-+...|.+|...=..+.++
T Consensus 563 s~~~elQQRa~E~~~l~~~~ 582 (866)
T KOG1062|consen 563 SLDTELQQRAVEYNALFAKD 582 (866)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 55777888887766666443
No 165
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=13 Score=43.06 Aligned_cols=257 Identities=15% Similarity=0.186 Sum_probs=144.4
Q ss_pred HhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 368 ATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 368 ~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
+.+...+.|++.|..+ |+.++-.|+..|+.||..++.|-- -.-|.+..+|.... +-=+....+....+|+-
T Consensus 178 Alr~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSs---NNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSS---NNWVLIKLLKLFAALTP 248 (877)
T ss_pred hHhhhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccC---CCeehHHHHHHHhhccc
Confidence 3566788999999999 999999999999999999986543 34577888876541 33345556666677765
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHH--HhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF--SLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~--~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
-+. ++++ -.+++|.+++.+..-+...-.+..++- +++... ++-..+ .=++..|-.++.+.++..+--++
T Consensus 249 lEP---RLgK--KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 249 LEP---RLGK--KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred cCc---hhhh--hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcCCccHHHHHH
Confidence 443 3333 378899999976521222333333332 222222 222222 23677888888888888888889
Q ss_pred HHHHHhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCC-hHHHHHH
Q 048793 525 VAILNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGS-DTSRESA 601 (683)
Q Consensus 525 ~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s-~~~ke~A 601 (683)
.|+.-+...+. ...+- -..++.+|.+. +....+||-.|.-.-... .+.++ +..|+.-+...+ ..-+..-
T Consensus 321 lam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~eI--Vk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSKK-NLMEI--VKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHHH--HHHHHHHHHhccchhHHHHH
Confidence 99988876432 22111 12356677653 455778888775433211 11111 222322222222 2344444
Q ss_pred HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHH
Q 048793 602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMES-GTARARRKAAALLRIL 652 (683)
Q Consensus 602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL~~l 652 (683)
+.-+..+|+.+....+... .=.+..|++|..- |+.+...-|..++-..
T Consensus 393 l~~II~iCS~snY~~ItdF---EWYlsVlveLa~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 393 LTRIISICSQSNYQYITDF---EWYLSVLVELARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred HHHHHHHhhhhhhhhhhhH---HHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence 4445667765443221111 1134445555443 3444444444444443
No 166
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.88 E-value=0.76 Score=45.27 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcc---------------cCcHHHHHHHHhcCC-----CHHHHHHHHHHHHHhhc
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMET---------------EGALNGVIEVLRSGA-----TWEAKGNAAATIFSLSG 490 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~---------------~G~I~~Lv~lL~~~~-----~~~~~~~Aa~~L~~Ls~ 490 (683)
+...-..++++|.||+..+..+..+... ..++..|+..+..|. ...-....+.+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3445567888899998887777644421 136778888876621 24556789999999999
Q ss_pred CcchhhHHhhhccc---HHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhc---CchHHHHHHhc
Q 048793 491 VHAHRKTLGRKTRV---VKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVER---GIVEIVAEAMD 554 (683)
Q Consensus 491 ~~~~~~~i~~~~G~---i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a---G~V~~Lv~lL~ 554 (683)
.++.|..+...... +..|+....+.+.--+.-++.+|.|+|...+....+... +++|.|+--|.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999864433 566666666666556688999999999999988888763 55666555554
No 167
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=0.086 Score=52.54 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=42.1
Q ss_pred CCcccccccccCCCCce----ecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCc
Q 048793 274 PADFRCPISLELMRNPV----VVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV 327 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv----~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~ 327 (683)
-..|+|||++-.|.+-. +.+|||.|.-++.++.- ..+|++|++.+...+++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 36799999999998754 55999999988877664 46999999999888765
No 168
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.54 E-value=3.4 Score=48.67 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=53.4
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHH
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMD 510 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~ 510 (683)
++.+|..|+.++..+=. ..+.+ .+++++.+.+.++ ++.+|+.|+-+++++-..+.. ...+ .|.+..+..
T Consensus 105 N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~--l~~~-~g~~~~l~~ 173 (757)
T COG5096 105 NEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD--LYHE-LGLIDILKE 173 (757)
T ss_pred CHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh--hhhc-ccHHHHHHH
Confidence 67777666666655421 12222 2566667777666 567777777777766544332 2222 566777777
Q ss_pred hhcCCChhHHHHHHHHHHHh
Q 048793 511 LVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 511 lL~~~~~~~~~~A~~aL~nL 530 (683)
++.+.++.++.+|+.+|..+
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 174 LVADSDPIVIANALASLAEI 193 (757)
T ss_pred HhhCCCchHHHHHHHHHHHh
Confidence 77666677777766666653
No 169
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.49 E-value=2.2 Score=50.10 Aligned_cols=96 Identities=17% Similarity=0.109 Sum_probs=70.2
Q ss_pred hccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhccc
Q 048793 380 LATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETE 459 (683)
Q Consensus 380 L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~ 459 (683)
|.++ |+..|.-|++.+..+-. .+. -..+++++.+++.++ ++.++..|+-++.++=. -.+....+.
T Consensus 101 l~d~-N~~iR~~AlR~ls~l~~-----~el--~~~~~~~ik~~l~d~----~ayVRk~Aalav~kly~--ld~~l~~~~- 165 (757)
T COG5096 101 LQDP-NEEIRGFALRTLSLLRV-----KEL--LGNIIDPIKKLLTDP----HAYVRKTAALAVAKLYR--LDKDLYHEL- 165 (757)
T ss_pred ccCC-CHHHHHHHHHHHHhcCh-----HHH--HHHHHHHHHHHccCC----cHHHHHHHHHHHHHHHh--cCHhhhhcc-
Confidence 3445 67777777766655411 111 124788899999999 99999999999988742 234455565
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793 460 GALNGVIEVLRSGATWEAKGNAAATIFSLSGV 491 (683)
Q Consensus 460 G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~ 491 (683)
|.+..+..++... ++.+..+|..+|..+-..
T Consensus 166 g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 166 GLIDILKELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHhhCC-CchHHHHHHHHHHHhchh
Confidence 8999888888877 799999999999987543
No 170
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=19 Score=42.13 Aligned_cols=252 Identities=17% Similarity=0.185 Sum_probs=137.8
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh-
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN- 451 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~- 451 (683)
.+++=++|++. ...+..+|+.++..+....+ | .+. .++..|-.+|+++ .+.+|-.|+.+|..++.-...
T Consensus 247 ~~fl~s~l~~K-~emV~~EaArai~~l~~~~~--r-~l~--pavs~Lq~flssp----~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 247 FPFLESCLRHK-SEMVIYEAARAIVSLPNTNS--R-ELA--PAVSVLQLFLSSP----KVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHHHHHhch-hHHHHHHHHHHHhhccccCH--h-hcc--hHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHhCCcc
Confidence 34555677777 78888999999998876543 2 222 2788888889998 889999999999988642111
Q ss_pred --------HHHHhccc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CcchhhHHhhhcccHHHHHHhhcCCChhH
Q 048793 452 --------KTRIMETE--GALNGVIEVLRSGATWEAKGNAAATIFSLSG--VHAHRKTLGRKTRVVKGLMDLVKGGPTSS 519 (683)
Q Consensus 452 --------k~~I~~~~--G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~--~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~ 519 (683)
-..|.... =+-..+..+|+.| ..+....-...+.+... .++++..++. +|.+|-.. -++-
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvd---ai~sLc~~----fp~k 388 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVD---AIRSLCLK----FPRK 388 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHH---HHHHHHhh----ccHH
Confidence 11222110 1344566667766 34444433333333322 2334433322 23333222 1222
Q ss_pred HHHHHHHHHHhcCCcc---hhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHc---CCcHHHHHHc----C--------
Q 048793 520 KRDALVAILNLAGDRE---TVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKR---GGLTAIVAAY----N-------- 581 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~---n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l---~~~~e~~~~~----g-------- 581 (683)
+.-...-|.++-...+ -+.. +|..++.++.+.++..+.++..|+.. |...+....+ |
T Consensus 389 ~~~~m~FL~~~Lr~eGg~e~K~a-----ivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~ 463 (865)
T KOG1078|consen 389 HTVMMNFLSNMLREEGGFEFKRA-----IVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPN 463 (865)
T ss_pred HHHHHHHHHHHHHhccCchHHHH-----HHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCC
Confidence 2233333444332211 1222 23345555554555566666666542 1111111100 1
Q ss_pred ---chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 582 ---TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ---~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
-+..+...+.-.+..++-.|+.+|..+...+.. . ...+.-+|...+.+.++.+|+.|...|+.+..
T Consensus 464 Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 464 PSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--L-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred cchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--c-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 133344444446777888888888877743221 1 13445556667788899999999999999984
No 171
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=92.47 E-value=2.4 Score=40.22 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=87.2
Q ss_pred cccHHHHHHhhcCCCh------hHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC---chhHHHHHHHHHHcCC
Q 048793 502 TRVVKGLMDLVKGGPT------SSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL---PEESVTILEAVVKRGG 572 (683)
Q Consensus 502 ~G~i~~Lv~lL~~~~~------~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~---~~~~~~aL~~L~~l~~ 572 (683)
.||+..|+.++.++.. +....++.++..|-.++-.-...+..-.|...+..+... ......|+++|-.+.-
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 6889999999998873 566889999999888765455666666777777777632 3458889999976443
Q ss_pred cH-H---HHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHH
Q 048793 573 LT-A---IVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVA 618 (683)
Q Consensus 573 ~~-e---~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~ 618 (683)
+. . .+...-.++.|+..|+..++..+.+|.+.+-+|....++...+
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~ 139 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRK 139 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHH
Confidence 32 2 2222334789999999999999999999999998877654333
No 172
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.34 E-value=2.8 Score=49.60 Aligned_cols=263 Identities=14% Similarity=0.124 Sum_probs=134.9
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chh-H
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EAN-K 452 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~-k 452 (683)
.|++.+.++ |-+.|.-|..-|..--..+.-+-+.=.+...+..|+++|+.. +.++|..|+.+|.-|+.- .+. -
T Consensus 9 ~Llekmtss-DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~----ngEVQnlAVKClg~lvsKvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSS-DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK----NGEVQNLAVKCLGPLVSKVKEDQL 83 (1233)
T ss_pred HHHHHccCC-CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHhhchHHHH
Confidence 567777777 777777776665543222211111112346788899999998 999999999999988721 111 1
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHH-HHHHHHHHhhcCcc-----hhhHHhhhcccHHHHHHhhcC-CC-hhHHHHHH
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKG-NAAATIFSLSGVHA-----HRKTLGRKTRVVKGLMDLVKG-GP-TSSKRDAL 524 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~-~Aa~~L~~Ls~~~~-----~~~~i~~~~G~i~~Lv~lL~~-~~-~~~~~~A~ 524 (683)
+.+ ++.|..-+-+|. .+.|- .+.+.....+.... ....+.. ...+.|+.-+.. ++ ..++-.++
T Consensus 84 e~~------ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~~~~la~tV~~--~~t~~l~~~i~~qe~~sai~~e~l 154 (1233)
T KOG1824|consen 84 ETI------VENLCSNMLSGK-EQLRDISSIGLKTVIANLPPSSSSFLAATVCK--RITPKLKQAISKQEDVSAIKCEVL 154 (1233)
T ss_pred HHH------HHHHhhhhccch-hhhccHHHHHHHHHHhcCCCccccccccHHHH--HHHHHHHHHhhhcccchhhHHHHH
Confidence 111 222332222342 23332 23333333343332 1122211 233444443322 22 23555555
Q ss_pred HHHHHhcCC-cchhHHHHhcCchHHHHHHhccCch-hHHHHHHHHHHc---CCcHHHHHHcCchHHHHHHHhc-CChHHH
Q 048793 525 VAILNLAGD-RETVGRLVERGIVEIVAEAMDVLPE-ESVTILEAVVKR---GGLTAIVAAYNTIKKLCILLRE-GSDTSR 598 (683)
Q Consensus 525 ~aL~nLs~~-~~n~~~iv~aG~V~~Lv~lL~~~~~-~~~~aL~~L~~l---~~~~e~~~~~g~v~~Lv~lL~~-~s~~~k 598 (683)
..|.-+-.. .+-..- ...+....++.-|.+... ...+|+..|..+ ++..... +.+..|++-|.+ .++...
T Consensus 155 Dil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~---~li~~Ll~~L~~~~q~~~~ 230 (1233)
T KOG1824|consen 155 DILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV---ELIEHLLKGLSNRTQMSAT 230 (1233)
T ss_pred HHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHhccCCCCchHHH
Confidence 555543222 111111 344555556655554322 244455545443 3322111 224444443422 334444
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHh---hcCCHHHHHHHHHHHHHHHhhhcc
Q 048793 599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELM---ESGTARARRKAAALLRILRRWAAG 658 (683)
Q Consensus 599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll---~~~~~~~k~kA~~lL~~l~~~~~~ 658 (683)
+--..+|..+|+..+.+.-. -...++|.+.... ....++.+++....+..|-+..+.
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 55566778888876643211 1145788888877 667899999998888887665444
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.05 E-value=3.8 Score=49.08 Aligned_cols=214 Identities=13% Similarity=0.053 Sum_probs=138.2
Q ss_pred HHHHHHhhhccCchhHHHHH---HhCcHHHHHHhhCCCCCCCChhhHHHHHHHH-HhcccCchhHHHHhcccCcHHHHHH
Q 048793 392 AVYELRSLSKTDSDSRACIA---EAGAIALLARHLGPDTASRLPNLQVNAVTTI-LNLSILEANKTRIMETEGALNGVIE 467 (683)
Q Consensus 392 A~~~L~~La~~~~~nr~~i~---~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL-~nLs~~~~~k~~I~~~~G~I~~Lv~ 467 (683)
=+++|..|++.-+-....+- .-|+.|..++||.+. ..+++-.-+-+= .-|+.++.-+..+++. ++-.-++.
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~----a~ELrpiLVFIWAKILAvD~SCQ~dLvKe-~g~~YF~~ 561 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS----ARELRPILVFIWAKILAVDPSCQADLVKE-NGYKYFLQ 561 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc----hHhhhhhHHHHHHHHHhcCchhHHHHHhc-cCceeEEE
Confidence 34555555555544443332 349999999999998 666653322222 3467787777888887 66777788
Q ss_pred HHhcC--CCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHHHHhcC-CcchhHHHHh
Q 048793 468 VLRSG--ATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAILNLAG-DRETVGRLVE 542 (683)
Q Consensus 468 lL~~~--~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~-~~~n~~~iv~ 542 (683)
+|..+ -+++-|..|+-+|..+..+-. .++...+ .+.|..-...|.++. +-.+.-++-+|..|-. ++++|..=++
T Consensus 562 vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r 640 (1387)
T KOG1517|consen 562 VLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR 640 (1387)
T ss_pred EecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc
Confidence 88752 235888889999988887643 5555555 677887778888753 4466677778888855 4567777789
Q ss_pred cCchHHHHHHhccC-chhHHHHHHHHHHcCCc-----HH---HHHH-----------cCch----HHHHHHHhcCChHHH
Q 048793 543 RGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-----TA---IVAA-----------YNTI----KKLCILLREGSDTSR 598 (683)
Q Consensus 543 aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-----~e---~~~~-----------~g~v----~~Lv~lL~~~s~~~k 598 (683)
.++...|+.+|.+. +++...|+-+|..+-++ .+ .+.. ...+ -.++.++..+++-++
T Consensus 641 ~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr 720 (1387)
T KOG1517|consen 641 DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVR 720 (1387)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHH
Confidence 99999999999864 66655555555432221 11 1100 0112 245556677888888
Q ss_pred HHHHHHHHHHHhc
Q 048793 599 ESAAATLVTICRK 611 (683)
Q Consensus 599 e~A~~aL~~L~~~ 611 (683)
...+-+|......
T Consensus 721 ~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 721 TEVVVALSHFVVG 733 (1387)
T ss_pred HHHHHHHHHHHHh
Confidence 7766667666553
No 174
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.70 E-value=14 Score=41.77 Aligned_cols=266 Identities=12% Similarity=0.077 Sum_probs=148.4
Q ss_pred HHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhcccCchhHHHHh
Q 048793 378 NKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSILEANKTRIM 456 (683)
Q Consensus 378 ~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~~k~~I~ 456 (683)
+.|.++ .+.....|+..|..++.-.- -.|.-|-|...+...++. .....+.+++.++.+.+...+-...+.
T Consensus 101 ~aL~s~-epr~~~~Aaql~aaIA~~El-------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~ 172 (858)
T COG5215 101 RALKSP-EPRFCTMAAQLLAAIARMEL-------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQ 172 (858)
T ss_pred HHhcCC-ccHHHHHHHHHHHHHHHhhC-------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHH
Confidence 455665 56666666666666654322 124444444433332222 134677889999999886544433333
Q ss_pred cccCcHHHHH-HHHhcCCCHHHHHHHHHHHHH-hhcCc------chh----------------hHHhhhcccHHHHHHh-
Q 048793 457 ETEGALNGVI-EVLRSGATWEAKGNAAATIFS-LSGVH------AHR----------------KTLGRKTRVVKGLMDL- 511 (683)
Q Consensus 457 ~~~G~I~~Lv-~lL~~~~~~~~~~~Aa~~L~~-Ls~~~------~~~----------------~~i~~~~G~i~~Lv~l- 511 (683)
....++-.+| .-++++.+..+|-.|..+|.+ |-... +++ +.....-|++-.++.|
T Consensus 173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence 3323333333 345667677888888899887 43221 111 1111112333333333
Q ss_pred -------------------hcCCChhHHHHHHHHHHHhcCCc---------------chh--HHHHhcCchHHHHHHhcc
Q 048793 512 -------------------VKGGPTSSKRDALVAILNLAGDR---------------ETV--GRLVERGIVEIVAEAMDV 555 (683)
Q Consensus 512 -------------------L~~~~~~~~~~A~~aL~nLs~~~---------------~n~--~~iv~aG~V~~Lv~lL~~ 555 (683)
+++.++++.-.|+.--..+|... .|. .+..-+.++|.|+.+|..
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 23444444444433332333211 011 112234688999999963
Q ss_pred -C---------chh-HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcC
Q 048793 556 -L---------PEE-SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVP 624 (683)
Q Consensus 556 -~---------~~~-~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~ 624 (683)
+ +.+ +..||...+.++++.-.... .+-+-.-+++.+-..+|.|+.++-++-..........+ ..
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pV---l~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~--V~ 407 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPV---LGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKI--VP 407 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhhHhHHHH---HHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhh--HH
Confidence 1 112 55666666766665433221 11222336678889999999999888764333333333 36
Q ss_pred CcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 625 GIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 625 G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
.++|.+..+..+..--+|..++|.+..+..+-
T Consensus 408 qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 408 QALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred hhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 77899998888888999999999998888753
No 175
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.52 E-value=0.18 Score=38.15 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=23.0
Q ss_pred cccccccccCCCCceec-CCccc--cchhhHHH-HHhcCCCCCCCCCCc
Q 048793 276 DFRCPISLELMRNPVVV-ATGQT--YDRQSISL-WIESGHNTCPKTGQT 320 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~-~~g~t--y~r~~I~~-w~~~g~~~cP~~~~~ 320 (683)
.+.||||.+.|.-||-. .|.|. ||-...-+ ..+.+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999954 77775 55532222 223445689999864
No 176
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.48 E-value=0.89 Score=39.57 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=54.5
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793 583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR 653 (683)
Q Consensus 583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
++.++..+...+.++|..|+.+|.++++..++..... -..+...|..+..+.++++|.-|.-|-++|+
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~---f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY---FNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 6677777888999999999999999998765543221 2467888899999999999999988877764
No 177
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=0.14 Score=54.07 Aligned_cols=52 Identities=29% Similarity=0.595 Sum_probs=46.7
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT 328 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p 328 (683)
...|.+++..+.|||-+..|..|+-..|-.|+.. +.+-|.+++++...+|++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 4579999999999999999999999999999986 778899999998887765
No 178
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=91.36 E-value=0.58 Score=40.99 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhh--cCCChhHHHHHHHHHHHhcCC-cchhHHHHh
Q 048793 477 AKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLV--KGGPTSSKRDALVAILNLAGD-RETVGRLVE 542 (683)
Q Consensus 477 ~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL--~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~ 542 (683)
.|....++|.+|+. ...++..+.. .|+||.++..- .+.+|-.++.|+.+|.||+.. ++|+..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35667888999985 4568888888 78899999875 344678999999999999985 567776644
No 179
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.13 Score=54.82 Aligned_cols=59 Identities=20% Similarity=0.421 Sum_probs=46.9
Q ss_pred ccccccccCCCCce-----ecCCccccchhhHHHHHhc-CCCCCCCCCCccCCCCCcchHHHHHH
Q 048793 277 FRCPISLELMRNPV-----VVATGQTYDRQSISLWIES-GHNTCPKTGQTLAHTNLVTNTALKNL 335 (683)
Q Consensus 277 f~CPis~~~m~dPv-----~~~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~~~~l~pn~~l~~~ 335 (683)
-+||||++-..-|+ +..|||-|--+||++|+-. -...||.|.......++.|-+++|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 57999998877664 5699999999999999942 23579999877667778888877664
No 180
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.15 E-value=2.1 Score=41.62 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=79.7
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCC-----CCCChhhHHHHHHHHHh
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDT-----ASRLPNLQVNAVTTILN 444 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~-----~~~d~~~qe~A~~aL~n 444 (683)
.....+++.|.+. .... ..+..|+..-...+. --..+.+.||+..|+.+|..-. ...+...+..++.+|..
T Consensus 66 ~~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 66 SSPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 3455677778765 3221 445555554444432 2335667899999999886320 11256788889999999
Q ss_pred cccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 048793 445 LSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLS 489 (683)
Q Consensus 445 Ls~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls 489 (683)
+..+..+...+...++++..|+..|.+. +..++..++.+|..+|
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 9888888888888889999999999987 7999999999998776
No 181
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.15 E-value=18 Score=38.09 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHH-HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIA-EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALN 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~-~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~ 463 (683)
++-.+.-|+.++.++.... +.|..+- +.-.--.++.+|+...+ +.++|-+.+-++.-|+.+..-.+.|-+....|.
T Consensus 162 ~~lTrlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg--~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVG--VKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4556667778888877644 4665543 33444567777776543 678999999999999877666655554445688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhhcCC---ChhHHHHH---HHHH--------
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLVKGG---PTSSKRDA---LVAI-------- 527 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL~~~---~~~~~~~A---~~aL-------- 527 (683)
.++.+.+......+.+.+++++.+++.- ...-....- .|-+.+-|++|..+ +.+.+.+- -..|
T Consensus 239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 8888888654567778899999999872 123333343 35456666666443 22221111 0011
Q ss_pred ------HHh-----cC---------CcchhHHHHhc--CchHHHHHHhccCchh-----HHHHHHHHHH-cCCcHHHHHH
Q 048793 528 ------LNL-----AG---------DRETVGRLVER--GIVEIVAEAMDVLPEE-----SVTILEAVVK-RGGLTAIVAA 579 (683)
Q Consensus 528 ------~nL-----s~---------~~~n~~~iv~a--G~V~~Lv~lL~~~~~~-----~~~aL~~L~~-l~~~~e~~~~ 579 (683)
..| +- ...|..++.+. .++..|.++|...... +-.=+..+.. ..........
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K 397 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK 397 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence 011 10 12366777664 5688899999754222 2222222222 2233334455
Q ss_pred cCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793 580 YNTIKKLCILLREGSDTSRESAAATLVTIC 609 (683)
Q Consensus 580 ~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~ 609 (683)
.|+=..+..+|.+.++++|-.|..++-.+-
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 588888999999999999999999876543
No 182
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.07 E-value=0.46 Score=42.77 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=55.8
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793 461 ALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA 531 (683)
Q Consensus 461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
.+..|+.+|....++.+...||.=|..++...++...+....|+-..++.++.+++++++..|+.++..|-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56779999965446888888999999988766655555555899999999999999999999999998764
No 183
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.98 E-value=20 Score=36.49 Aligned_cols=233 Identities=14% Similarity=0.106 Sum_probs=137.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCC-------C-CCCCChhhHHHHHHHHH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGP-------D-TASRLPNLQVNAVTTIL 443 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s-------~-~~~~d~~~qe~A~~aL~ 443 (683)
+..++--|. +++.++.|+-+|..--+..++-...+-.. |.+..|+.=.-+ . .......=..+|+..|.
T Consensus 28 ~~~~i~~l~---~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ 104 (293)
T KOG3036|consen 28 AYQLILSLV---SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ 104 (293)
T ss_pred hhhHHHHhh---CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH
Confidence 344444443 34566777777765544333333333332 555554432111 1 00012223467887788
Q ss_pred hcccCchhHHHHhcccCcHHHHHHHHhc----CCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChh
Q 048793 444 NLSILEANKTRIMETEGALNGVIEVLRS----GATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTS 518 (683)
Q Consensus 444 nLs~~~~~k~~I~~~~G~I~~Lv~lL~~----~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~ 518 (683)
-++.|++.|.....+ ..---|-.+|.. ....-.|-.+.+++..|...++ .-....-..++||..++.+..|+.-
T Consensus 105 cvASHpdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSel 183 (293)
T KOG3036|consen 105 CVASHPDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSEL 183 (293)
T ss_pred HHhcCcchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHH
Confidence 889999999998886 443344455543 2235678889999999998765 3333333379999999999999998
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHh-c---CchHHH----HHHhccCc--hhHHHHHHHHHHcCCcHHHHHHcCc-hH---
Q 048793 519 SKRDALVAILNLAGDRETVGRLVE-R---GIVEIV----AEAMDVLP--EESVTILEAVVKRGGLTAIVAAYNT-IK--- 584 (683)
Q Consensus 519 ~~~~A~~aL~nLs~~~~n~~~iv~-a---G~V~~L----v~lL~~~~--~~~~~aL~~L~~l~~~~e~~~~~g~-v~--- 584 (683)
.+.-|..++..+-.++.+-..++. + -+|..+ +.-|.+.+ .....++....+++.++..+.+.+. .|
T Consensus 184 SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~L 263 (293)
T KOG3036|consen 184 SKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQL 263 (293)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchh
Confidence 999999999988888777665543 2 222222 22222222 2355666666777888777666532 22
Q ss_pred ---HHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 585 ---KLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 585 ---~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
.+.. +-..++.+|.+-...|.++|.
T Consensus 264 rd~tfs~-~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 264 RDGTFSL-LLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred ccchHHH-HHhcChhHHHHHHHHHHHhcc
Confidence 1212 223556666666666666654
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.75 E-value=4.6 Score=48.45 Aligned_cols=159 Identities=12% Similarity=0.076 Sum_probs=111.0
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHh-hhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRS-LSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~-La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
-|.-|..+++|+++ ..+.+---+..=.. ||-+ +..+.-+++.++-...+.+|... ..-+++-+..|+-+|..+..+
T Consensus 511 VGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL~~~-~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSS-ARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVLDPS-QAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred cchHHHHHHHhccc-hHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEecCc-CCCCHHHHHHHHHHHHHHHcc
Confidence 45678889999887 55555443333333 4444 55777777777777777777763 111345556666666666544
Q ss_pred -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
.-.++.-.+. +.|..-...|..+..+-.|+=.|-+|..|-.+ +++|..=.. .++.+.|..+|.+..++++..|+-|
T Consensus 588 f~lGQ~acl~~-~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 588 FKLGQKACLNG-NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred cchhHHHhccc-cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHH
Confidence 4445555565 78887778887753477888888889888765 455555444 8999999999999999999999999
Q ss_pred HHHhcCC
Q 048793 527 ILNLAGD 533 (683)
Q Consensus 527 L~nLs~~ 533 (683)
|..+-.+
T Consensus 666 Lgtfl~~ 672 (1387)
T KOG1517|consen 666 LGTFLSN 672 (1387)
T ss_pred HHHHhcc
Confidence 9988663
No 185
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.17 Score=53.97 Aligned_cols=41 Identities=22% Similarity=0.575 Sum_probs=36.1
Q ss_pred ccccccccCCCC---ceecCCccccchhhHHHHHhcCC--CCCCCC
Q 048793 277 FRCPISLELMRN---PVVVATGQTYDRQSISLWIESGH--NTCPKT 317 (683)
Q Consensus 277 f~CPis~~~m~d---Pv~~~~g~ty~r~~I~~w~~~g~--~~cP~~ 317 (683)
|.|||..|--.| |+.+.|||..+|.+|.+-...|. ..||.|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 799999887765 88999999999999999988876 679888
No 186
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.66 E-value=0.98 Score=39.29 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=47.4
Q ss_pred cccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHh--cCchHHHHHHhccCchhHHHHHHHHHH
Q 048793 502 TRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE--RGIVEIVAEAMDVLPEESVTILEAVVK 569 (683)
Q Consensus 502 ~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--aG~V~~Lv~lL~~~~~~~~~aL~~L~~ 569 (683)
.-.+++++..+.+.+.+++..|+.+|+|++.... ..++. ..+...|.+++.+..+.+..+...|.+
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ 93 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRSAAELLDR 93 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 3589999999999999999999999999987543 33332 356677777776554455555555543
No 187
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=19 Score=41.72 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=64.2
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL- 448 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~- 448 (683)
+..+..+...|.+. |+-.+.-|+..+.++-.. ++++.+. .=|| ++|.++.. ..-++..|+-+|+.|-..
T Consensus 110 klvin~iknDL~sr-n~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~--~~~vkqkaALclL~L~r~s 179 (938)
T KOG1077|consen 110 KLVINSIKNDLSSR-NPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSS--MDYVKQKAALCLLRLFRKS 179 (938)
T ss_pred HHHHHHHHhhhhcC-CcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcc--hHHHHHHHHHHHHHHHhcC
Confidence 33445556667777 788888888888887543 2444433 2244 66766611 234666666666666432
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV 491 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~ 491 (683)
++ ++...+-...++++|... +..+...+...+-.|+..
T Consensus 180 pD----l~~~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~ 217 (938)
T KOG1077|consen 180 PD----LVNPGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKK 217 (938)
T ss_pred cc----ccChhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHc
Confidence 22 222225678888888766 466666777777777653
No 188
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=2.7 Score=48.74 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=95.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT 453 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~ 453 (683)
+.+++..... |.+.+.-.---|.+.++..++- ..+++..++.=-.++ ++.++..|+..+.-+-.+
T Consensus 52 ~dvvk~~~T~-dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~----np~iR~lAlrtm~~l~v~----- 116 (734)
T KOG1061|consen 52 PDVVKCMQTR-DLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDP----NPLIRALALRTMGCLRVD----- 116 (734)
T ss_pred HHHHhhcccC-CchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCC----CHHHHHHHhhceeeEeeh-----
Confidence 3445555555 6665555555666666666522 124555554444444 899998888877665432
Q ss_pred HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793 454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD 533 (683)
Q Consensus 454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.+.+. ...+|...++.+ ++.+|..|+..+.++-. .+...... .|.++.|-.++.+.++.+..+|+.+|..+...
T Consensus 117 ~i~ey--~~~Pl~~~l~d~-~~yvRktaa~~vakl~~--~~~~~~~~-~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 117 KITEY--LCDPLLKCLKDD-DPYVRKTAAVCVAKLFD--IDPDLVED-SGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HHHHH--HHHHHHHhccCC-ChhHHHHHHHHHHHhhc--CChhhccc-cchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 33332 677899999888 68888887777776643 33344334 89999999999988899999999999999765
Q ss_pred cc
Q 048793 534 RE 535 (683)
Q Consensus 534 ~~ 535 (683)
+.
T Consensus 191 ~~ 192 (734)
T KOG1061|consen 191 HP 192 (734)
T ss_pred CC
Confidence 54
No 189
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=90.28 E-value=10 Score=45.19 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=88.5
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc--
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE-- 449 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-- 449 (683)
.+.+++.|+ ++-.+..|++++..++...-. +...+. ..++|.|..+++.. ....+...+.++..|..+-
T Consensus 613 L~il~eRl~---nEiTRl~AvkAlt~Ia~S~l~i~l~~~l-~~il~~l~~flrK~----~r~lr~~~l~a~~~L~~~~~~ 684 (1233)
T KOG1824|consen 613 LPILLERLG---NEITRLTAVKALTLIAMSPLDIDLSPVL-TEILPELASFLRKN----QRALRLATLTALDKLVKNYSD 684 (1233)
T ss_pred HHHHHHHHh---chhHHHHHHHHHHHHHhccceeehhhhH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 445555553 567788899999988765421 222222 35788899999887 6667777777777665432
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChh
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTS 518 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~ 518 (683)
.......+ -++..+-.++... +....++|...|..+.........-.. .-.++.++.+++++.-.
T Consensus 685 ~~~~~~~e--~vL~el~~Lises-dlhvt~~a~~~L~tl~~~~ps~l~~~~-~~iL~~ii~ll~Spllq 749 (1233)
T KOG1824|consen 685 SIPAELLE--AVLVELPPLISES-DLHVTQLAVAFLTTLAIIQPSSLLKIS-NPILDEIIRLLRSPLLQ 749 (1233)
T ss_pred cccHHHHH--HHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcccHHHHHHh-hhhHHHHHHHhhCcccc
Confidence 22222222 2455555566555 678888999999999887776665554 67899999999977543
No 190
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.10 E-value=12 Score=39.80 Aligned_cols=174 Identities=12% Similarity=0.102 Sum_probs=95.9
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhc-ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---cchhhHHhhhcccHH
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIME-TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV---HAHRKTLGRKTRVVK 506 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~-~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~---~~~~~~i~~~~G~i~ 506 (683)
....++.++..|.++....-.-..+.+ ..-.+..+.+.++.|. .+.+..|+.++.-|+.. .+....+.. ...|
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~ 132 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGEDSEEIFE--ELKP 132 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHH
Confidence 456666666666665422111111111 1135677888888884 56677787777766644 234445543 6889
Q ss_pred HHHHhhcCCCh--hHHHHHHHHHHHhcC---Cc-chhHHHHhcCchHHH--HHHhcc-C----------chh---HHHHH
Q 048793 507 GLMDLVKGGPT--SSKRDALVAILNLAG---DR-ETVGRLVERGIVEIV--AEAMDV-L----------PEE---SVTIL 564 (683)
Q Consensus 507 ~Lv~lL~~~~~--~~~~~A~~aL~nLs~---~~-~n~~~iv~aG~V~~L--v~lL~~-~----------~~~---~~~aL 564 (683)
.|..++.+++. ..+..++.+|.-++. .+ +......+ .+..+ ...+.. + +.. +..++
T Consensus 133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 99999987753 344455555555433 22 22221111 11211 111111 1 112 55566
Q ss_pred HHHHHcCCcHHHHHH-cCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793 565 EAVVKRGGLTAIVAA-YNTIKKLCILLREGSDTSRESAAATLVTIC 609 (683)
Q Consensus 565 ~~L~~l~~~~e~~~~-~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~ 609 (683)
+.|............ ...++.|+.+|.+.+..+|-.|-.+|.-|.
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 666655544333322 246899999999999999988877766554
No 191
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.03 E-value=4.4 Score=45.89 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=99.1
Q ss_pred cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH---HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793 415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK---TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV 491 (683)
Q Consensus 415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k---~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~ 491 (683)
.|..++.+|++. .+.++++|+.....|+.--.++ +.+..- |. .|.+-|... .+++......+++.+...
T Consensus 605 ivStiL~~L~~k----~p~vR~~aadl~~sl~~vlk~c~e~~~l~kl-g~--iLyE~lge~-ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 605 IVSTILKLLRSK----PPDVRIRAADLMGSLAKVLKACGETKELAKL-GN--ILYENLGED-YPEVLGSILKAICSIYSV 676 (975)
T ss_pred HHHHHHHHhcCC----CccHHHHHHHHHHHHHHHHHhcchHHHHHHH-hH--HHHHhcCcc-cHHHHHHHHHHHHHHhhh
Confidence 455667788888 8899999998888776432211 122222 32 245555544 688888777777777665
Q ss_pred cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhcc-CchhHHHHHHHHHH
Q 048793 492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDV-LPEESVTILEAVVK 569 (683)
Q Consensus 492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~-~~~~~~~aL~~L~~ 569 (683)
...+..---..|++|.|..+|++....+..+.+..+..+|.+.....-.-+ .-+---|+++|.+ +.+....|...+..
T Consensus 677 ~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 677 HRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred hcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 443322211268999999999998888889999999999886543211111 1122336666654 34445555555443
Q ss_pred cCCcHHHHHHcCchHHHHHHHhc
Q 048793 570 RGGLTAIVAAYNTIKKLCILLRE 592 (683)
Q Consensus 570 l~~~~e~~~~~g~v~~Lv~lL~~ 592 (683)
++ .++|--..|.-+|.+
T Consensus 757 Is------~aiGPqdvL~~Llnn 773 (975)
T COG5181 757 IS------RAIGPQDVLDILLNN 773 (975)
T ss_pred HH------hhcCHHHHHHHHHhc
Confidence 22 233444556666654
No 192
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.87 E-value=3.1 Score=42.74 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-CchhHHHHhcccCcHHHH
Q 048793 387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEANKTRIMETEGALNGV 465 (683)
Q Consensus 387 ~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I~~L 465 (683)
.....|+..|.-++--++..|..+.+..++..|+.+|... ..+.++..++.+|..+-. +..|....-+. +|+..+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~---~~~~i~~a~L~tLv~iLld~p~N~r~FE~~-~Gl~~v 181 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS---NPPAIQSACLDTLVCILLDSPENQRDFEEL-NGLSTV 181 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC---CCchHHHHHHHHHHHHHHcChHHHHHHHHh-CCHHHH
Confidence 3456778888888888888999999999999999999543 167899999988877655 46776666666 999999
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHh
Q 048793 466 IEVLRSG-ATWEAKGNAAATIFSL 488 (683)
Q Consensus 466 v~lL~~~-~~~~~~~~Aa~~L~~L 488 (683)
+.++++. .+.+++-.....|+-.
T Consensus 182 ~~llk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 182 CSLLKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred HHHHccccccHHHhHHHHHHHHHH
Confidence 9999864 3466776777766533
No 193
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.79 E-value=13 Score=45.38 Aligned_cols=217 Identities=15% Similarity=0.148 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHh--CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc--CchhHHHHhcccC
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEA--GAIALLARHLGPDTASRLPNLQVNAVTTILNLSI--LEANKTRIMETEG 460 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~--G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~--~~~~k~~I~~~~G 460 (683)
+..+|.++.+.|..++.. +.......+. ..-..|.+-.++. +..++..++.+|..|-. +.+....|...
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~----~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~-- 739 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSS----SSPAQASRLKCLKRLLKLLSAEHCDLIPKL-- 739 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHhccHHHHHHHHHH--
Confidence 788899999999988876 2232222221 2222333444444 55677777777666532 23555555543
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----CcchhhHHhhhcccHHHHHHhhcCC--ChhHHHHH--HHHHHHhcC
Q 048793 461 ALNGVIEVLRSGATWEAKGNAAATIFSLSG----VHAHRKTLGRKTRVVKGLMDLVKGG--PTSSKRDA--LVAILNLAG 532 (683)
Q Consensus 461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~----~~~~~~~i~~~~G~i~~Lv~lL~~~--~~~~~~~A--~~aL~nLs~ 532 (683)
|+-++-.++.- +..++++|-.+|..+.. .+..... . ...|...+.++..| .......| +.++..+..
T Consensus 740 -I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 740 -IPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred -HHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 55555555555 78999999999999983 1111111 1 22566666666554 22222222 344444333
Q ss_pred CcchhHHHHhcCchHHHHHHh----cc-CchhHHHHHHHHHHcC-CcHHHHHHc---CchHHHHHHHhcCChHHHHHHHH
Q 048793 533 DRETVGRLVERGIVEIVAEAM----DV-LPEESVTILEAVVKRG-GLTAIVAAY---NTIKKLCILLREGSDTSRESAAA 603 (683)
Q Consensus 533 ~~~n~~~iv~aG~V~~Lv~lL----~~-~~~~~~~aL~~L~~l~-~~~e~~~~~---g~v~~Lv~lL~~~s~~~ke~A~~ 603 (683)
+-..+.+.+.++.+++.+ .+ .++.+..|++.+..+. .-++..... .-++.+..+++..+...+.....
T Consensus 815 ---e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 815 ---EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred ---HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 223334444555555544 33 3566777888776543 334443332 13566666677778888888888
Q ss_pred HHHHHHhcCCchH
Q 048793 604 TLVTICRKGGSEM 616 (683)
Q Consensus 604 aL~~L~~~~~~~~ 616 (683)
.|-.|++..+-+.
T Consensus 892 LlekLirkfg~~e 904 (1176)
T KOG1248|consen 892 LLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHhCHHH
Confidence 8888887665433
No 194
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=89.76 E-value=5.5 Score=46.10 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=101.2
Q ss_pred HHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH--HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch
Q 048793 417 ALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK--TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH 494 (683)
Q Consensus 417 p~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k--~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~ 494 (683)
..+++.|.+. .+.++..|+..+..++.--.++ ..++..-|. .|.+.|... .+++.-....+|..+.....-
T Consensus 802 stiL~rLnnk----sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 802 STILWRLNNK----SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHhcCC----ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 3445667777 8899999999888887543332 122322243 356677665 688888888888877665432
Q ss_pred hhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhccC-chhHHHHHHHHHHcCC
Q 048793 495 RKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDVL-PEESVTILEAVVKRGG 572 (683)
Q Consensus 495 ~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~ 572 (683)
-...--..|.+|.|..+|++....+.++++..+..+|.......-+-+ .-+---|+++|... .+....|...+..++
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia- 953 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA- 953 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-
Confidence 222222268999999999998888999999999999986543222211 12223466777643 344445555444322
Q ss_pred cHHHHHHcCchHHHHHHHhcC
Q 048793 573 LTAIVAAYNTIKKLCILLREG 593 (683)
Q Consensus 573 ~~e~~~~~g~v~~Lv~lL~~~ 593 (683)
.++|--..|..+|.+-
T Consensus 954 -----kaIGPqdVLatLlnnL 969 (1172)
T KOG0213|consen 954 -----KAIGPQDVLATLLNNL 969 (1172)
T ss_pred -----HhcCHHHHHHHHHhcc
Confidence 3345555666666543
No 195
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=89.53 E-value=2.3 Score=41.94 Aligned_cols=101 Identities=12% Similarity=0.026 Sum_probs=71.6
Q ss_pred HhCcHHHHHHhhCCCCC--CCChhhHHHHHHHHHhcccCchhHHHHhccc-Cc--HHHHHHHHhcCCCHHHHHHHHHHHH
Q 048793 412 EAGAIALLARHLGPDTA--SRLPNLQVNAVTTILNLSILEANKTRIMETE-GA--LNGVIEVLRSGATWEAKGNAAATIF 486 (683)
Q Consensus 412 ~~G~Ip~Lv~lL~s~~~--~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~-G~--I~~Lv~lL~~~~~~~~~~~Aa~~L~ 486 (683)
+..++..|+.++..+.. .....-..+.+.++.|++..++.|.-+.... +. |..|+.++.+. +..-|.-++++|.
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~Ir 128 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIR 128 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHH
Confidence 34578888887766311 0123456788889999999999999888542 33 66677777777 7888899999999
Q ss_pred HhhcCcchhhHHhhh--cccHHHHHHhhc
Q 048793 487 SLSGVHAHRKTLGRK--TRVVKGLMDLVK 513 (683)
Q Consensus 487 ~Ls~~~~~~~~i~~~--~G~i~~Lv~lL~ 513 (683)
|+|...+....+... .+++|.|+--|.
T Consensus 129 NccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 129 NCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999988766666542 256666665554
No 196
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=88.77 E-value=21 Score=37.94 Aligned_cols=188 Identities=14% Similarity=0.184 Sum_probs=106.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC---cchhHH
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD---RETVGR 539 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n~~~ 539 (683)
..+..|... +...|+.+...|..+....-.-..+. ...-.+..+.+.++.|..+-..-|+.++.-|+.. ......
T Consensus 47 ~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 344444444 57888888888887765443222222 1134677778888888766666677777777665 234444
Q ss_pred HHhcCchHHHHHHhccCch---h---HHHHHHHHHHcCCcH-HHHHH-cCchHHHHHH--Hhc-CC---------hHHHH
Q 048793 540 LVERGIVEIVAEAMDVLPE---E---SVTILEAVVKRGGLT-AIVAA-YNTIKKLCIL--LRE-GS---------DTSRE 599 (683)
Q Consensus 540 iv~aG~V~~Lv~lL~~~~~---~---~~~aL~~L~~l~~~~-e~~~~-~g~v~~Lv~l--L~~-~s---------~~~ke 599 (683)
+.+ ...|.|...+.++.. . +..||++++.+++.. +.... ......+... ++. ++ +...-
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 443 567888888875421 1 344667666655432 22221 1122322222 111 11 23444
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
.|+.+-.-|...-+...+...+ ...++.|..++.+.+..+|--|...|-++-+.
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4443322222322332233322 35689999999999999999999999888663
No 197
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=37 Score=41.29 Aligned_cols=255 Identities=11% Similarity=0.084 Sum_probs=146.4
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..+.+..|.+.|+.. +..++..|++-+..++...+ ..+++ .+|...+.++.-. .+...-..|+.+|..|+.-
T Consensus 339 vE~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~---e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPA---EDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcC---CchhHHHHHHHHHHHHHhc
Confidence 346788888888888 99999999999999999887 33332 3566667755433 1456677888899888753
Q ss_pred chhHHHHhcccCcHHHHHHHHh----c---CCCHHHHHHHHHHHHHhhcCcchh--hHHhhhcccHHHHH-HhhcCCChh
Q 048793 449 EANKTRIMETEGALNGVIEVLR----S---GATWEAKGNAAATIFSLSGVHAHR--KTLGRKTRVVKGLM-DLVKGGPTS 518 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~----~---~~~~~~~~~Aa~~L~~Ls~~~~~~--~~i~~~~G~i~~Lv-~lL~~~~~~ 518 (683)
.--...... .++|.+++-|. . .....+|..||-+++.++...+.. ..+. ......|+ ..+-+....
T Consensus 411 GlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l--~~L~s~LL~~AlFDrevn 486 (1133)
T KOG1943|consen 411 GLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL--QSLASALLIVALFDREVN 486 (1133)
T ss_pred CCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH--HHHHHHHHHHHhcCchhh
Confidence 221111111 35566665553 1 113578899999999988754332 1111 12333333 334455567
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc----hhHHHHHHHHHH-cCCcHHHHHHcCchHHHHHH----
Q 048793 519 SKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP----EESVTILEAVVK-RGGLTAIVAAYNTIKKLCIL---- 589 (683)
Q Consensus 519 ~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~----~~~~~aL~~L~~-l~~~~e~~~~~g~v~~Lv~l---- 589 (683)
.+..|..|+........|. |.=++++..-+ ....++...|+. ++..+ |-...++.-
T Consensus 487 cRRAAsAAlqE~VGR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~------~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFS------GYREPVFNHLLTK 551 (1133)
T ss_pred HhHHHHHHHHHHhccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhh------hHHHHHHHHHHhc
Confidence 8888888887765544443 22233332111 112233333322 12111 222222222
Q ss_pred -HhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHH----HHHHHHHHHHHhhh
Q 048793 590 -LREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARAR----RKAAALLRILRRWA 656 (683)
Q Consensus 590 -L~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k----~kA~~lL~~l~~~~ 656 (683)
+.+-+...++.|+++|..|....+. ....++++.|+.-..+++...+ ..+..++..++...
T Consensus 552 Kv~HWd~~irelaa~aL~~Ls~~~pk------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 552 KVCHWDVKIRELAAYALHKLSLTEPK------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhHH------hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence 3456889999999999998875432 1234677777766655554333 44555665555544
No 198
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=88.35 E-value=17 Score=37.32 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHh-------hCCCCC-CCChhhHHHHHHHHHhcccCchhHHHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARH-------LGPDTA-SRLPNLQVNAVTTILNLSILEANKTRI 455 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~l-------L~s~~~-~~d~~~qe~A~~aL~nLs~~~~~k~~I 455 (683)
+++.++.|+.+|..--...++-.-.+-. -|.+..|+.= |..+.- .....-..+|++.|.-++.|++.|...
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 6788999888887654433322223333 3777777542 222200 001122356777777789999999999
Q ss_pred hcccCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 456 METEGALNGVIEVLRSGA----TWEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 456 ~~~~G~I~~Lv~lL~~~~----~~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
.++ ...--|..+|+... -...|-.+.+++..|...++ .-.-+.. .+.||..++.+..|+.-.+..|.-++..
T Consensus 88 l~a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKA-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHT-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHc-CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 987 76666666776431 14567788899999987543 3333334 7899999999999988788888888777
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcC-chHHHHH-HHhcCChHHHHHHHHHHHH
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYN-TIKKLCI-LLREGSDTSRESAAATLVT 607 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g-~v~~Lv~-lL~~~s~~~ke~A~~aL~~ 607 (683)
+-.++.+-..+ |...+...+.+ ....++. +....|++.-++.+++-..
T Consensus 166 IL~dd~GL~yi------------------------------C~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlR 215 (262)
T PF04078_consen 166 ILLDDVGLNYI------------------------------CQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLR 215 (262)
T ss_dssp HHHSHHHHHHH------------------------------TSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHcchhHHHHH------------------------------hcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 76655443333 33333332221 1222332 3455677888888888888
Q ss_pred HHhcCCchHHHHHHhcCCcHHHHHHHhhc--------CCHHHHHHHHHHHHHHH
Q 048793 608 ICRKGGSEMVADIAAVPGIERVIWELMES--------GTARARRKAAALLRILR 653 (683)
Q Consensus 608 L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~--------~~~~~k~kA~~lL~~l~ 653 (683)
|+.+.. .+..+.. .|=..+.+ +++.+|+.-..++.++.
T Consensus 216 Lsdnpr---ar~aL~~-----~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 216 LSDNPR---AREALRQ-----CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp HTTSTT---HHHHHHH-----HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HccCHH---HHHHHHH-----hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 887543 2332321 11122333 36778888777777654
No 199
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.63 E-value=7.5 Score=42.88 Aligned_cols=132 Identities=13% Similarity=0.120 Sum_probs=98.8
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCc---hhHHHHHHhCcHHHHHHhhCCCCC---CCChhhHHHHHHHHHhcccCc
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDS---DSRACIAEAGAIALLARHLGPDTA---SRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~---~nr~~i~~~G~Ip~Lv~lL~s~~~---~~d~~~qe~A~~aL~nLs~~~ 449 (683)
+..+++.. +.+.|..|+--...+.+.++ .||+.+.++-+.+.+=++|.+... ..|...+..++++|.-.|.++
T Consensus 16 ~~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 44455555 67888999998889988765 468889999888999999987532 124445566777777777776
Q ss_pred hh--HHHHhcccCcHHHHHHHHhcCCCHH------HHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh
Q 048793 450 AN--KTRIMETEGALNGVIEVLRSGATWE------AKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV 512 (683)
Q Consensus 450 ~~--k~~I~~~~G~I~~Lv~lL~~~~~~~------~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL 512 (683)
+- ...|+. .||.|.+++..+.++. ....+-.+|...+..+.....+.. .|+++.+-++-
T Consensus 95 ElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y 161 (698)
T KOG2611|consen 95 ELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMY 161 (698)
T ss_pred hhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHH
Confidence 53 345554 4999999998765554 667888999999999888777777 79999988764
No 200
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=0.61 Score=48.75 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=38.5
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
++-.||||-----..|+.||||.-|..||.+++.. ...|=.|+...
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 78899999766667789999999999999999984 66788887553
No 201
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=0.28 Score=53.34 Aligned_cols=51 Identities=22% Similarity=0.431 Sum_probs=39.1
Q ss_pred CCCcccccccccCC-----------------CCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 273 VPADFRCPISLELM-----------------RNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 273 ~p~~f~CPis~~~m-----------------~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
+...--|+||+... ++-+++||.|.|-|.|+++|.+.-.-.||+|+.+|.+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44556799987532 2345679999999999999999645689999998864
No 202
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=66 Score=37.65 Aligned_cols=251 Identities=12% Similarity=0.105 Sum_probs=149.7
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-C
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-L 448 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~ 448 (683)
|+..+.++.+|+++ -+-++..|+..|..+.-..++. + .-.+|.|+.-|..+ |+.++-.|+.+++.|+. +
T Consensus 143 RDLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDp----Dp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 143 RDLADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDP----DPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCC----CchHHHHHHHHHHHHHhhC
Confidence 55566788899988 8999999999888776655422 2 24579999999999 99999999999999995 4
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChh-HHHHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTS-SKRDALVAI 527 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~aL 527 (683)
+.|.-. .-|.+.++|....+-=..........+|+-. -.++|. ..+++|.+++.+.... ..-.++.++
T Consensus 213 PknyL~------LAP~ffkllttSsNNWmLIKiiKLF~aLtpl---EPRLgK--KLieplt~li~sT~AmSLlYECvNTV 281 (877)
T KOG1059|consen 213 PQNYLQ------LAPLFYKLLVTSSNNWVLIKLLKLFAALTPL---EPRLGK--KLIEPITELMESTVAMSLLYECVNTV 281 (877)
T ss_pred Cccccc------ccHHHHHHHhccCCCeehHHHHHHHhhcccc---Cchhhh--hhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 555432 2356777776442322333344555555544 345554 5899999999875432 333344333
Q ss_pred H--HhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHH--cC-CcHHHHHHcCchHHHHHHHhcCChHHHHHHH
Q 048793 528 L--NLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVK--RG-GLTAIVAAYNTIKKLCILLREGSDTSRESAA 602 (683)
Q Consensus 528 ~--nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~--l~-~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~ 602 (683)
. +++....+....+.. +|..|-.++.+ .+--.+.++.|+. +. .++..+.+- -..+++.|...++.+|-.|.
T Consensus 282 Va~s~s~g~~d~~asiqL-CvqKLr~fied-sDqNLKYlgLlam~KI~ktHp~~Vqa~--kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 282 VAVSMSSGMSDHSASIQL-CVQKLRIFIED-SDQNLKYLGLLAMSKILKTHPKAVQAH--KDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred eeehhccCCCCcHHHHHH-HHHHHhhhhhc-CCccHHHHHHHHHHHHhhhCHHHHHHh--HHHHHHHhccCCchhHHHHH
Confidence 3 333333233322221 23344444432 2222334444332 22 455544432 35677888889999999999
Q ss_pred HHHHHHHhcCCchHHHHHHhcCCcHHHHHHH-h-hcCCHHHHHHHHHHHHHHHh
Q 048793 603 ATLVTICRKGGSEMVADIAAVPGIERVIWEL-M-ESGTARARRKAAALLRILRR 654 (683)
Q Consensus 603 ~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~L-l-~~~~~~~k~kA~~lL~~l~~ 654 (683)
..|..+.... .+.++ ++.|... . .+|+.---+-+..++..++.
T Consensus 358 dLl~gmVskk---Nl~eI------Vk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 358 DLLYGMVSKK---NLMEI------VKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHHHhhhh---hHHHH------HHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 9998887632 23332 3444432 2 22333333566667777665
No 203
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.15 E-value=67 Score=37.50 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=80.0
Q ss_pred HHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHh
Q 048793 391 DAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLR 470 (683)
Q Consensus 391 ~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~ 470 (683)
..+.+.-+|+.+-+.....+.+ ++..|-.+|.+. ...++-.|+..+..|+..+.....+-.. .+.++..|+
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r----E~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLk 378 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHR----ETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLK 378 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc----cccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhc
Confidence 3344444555555545555543 466778888887 7788888888888887765555544433 778899998
Q ss_pred cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793 471 SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524 (683)
Q Consensus 471 ~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
...|..+|+.|+..|+.+|.. +|...|+. .|++.|.+.+...+++-+
T Consensus 379 terDvSirrravDLLY~mcD~-~Nak~IV~------elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 379 TERDVSIRRRAVDLLYAMCDV-SNAKQIVA------ELLQYLETADYSIREEIV 425 (938)
T ss_pred cccchHHHHHHHHHHHHHhch-hhHHHHHH------HHHHHHhhcchHHHHHHH
Confidence 666899999999999998765 45555543 467777666666655443
No 204
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.82 E-value=14 Score=35.69 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcH-H
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGAL-N 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I-~ 463 (683)
++.+|.+++-.+..++...+. ++ ...+|.+...|.++ ++.++..|+.+|..|...+--|. .|-+ .
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~----~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDE----DPLVRKTALLVLSHLILEDMIKV-----KGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHcCceee-----hhhhhH
Confidence 467889999999999887752 22 24688999999999 99999999999999876543332 1333 6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG 514 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~ 514 (683)
.++..|... +++++..|...+..+.... +...+. ..++.++.-|.+
T Consensus 67 ~~l~~l~D~-~~~Ir~~A~~~~~e~~~~~-~~~~i~---~~~~e~i~~l~~ 112 (178)
T PF12717_consen 67 RILKLLVDE-NPEIRSLARSFFSELLKKR-NPNIIY---NNFPELISSLNN 112 (178)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHHHhc-cchHHH---HHHHHHHHHHhC
Confidence 677788666 7999999999999887753 222222 235555555543
No 205
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.67 E-value=0.47 Score=48.61 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=39.2
Q ss_pred cccccc-cCCCCceec----CCccccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793 278 RCPISL-ELMRNPVVV----ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN 325 (683)
Q Consensus 278 ~CPis~-~~m~dPv~~----~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~ 325 (683)
.||+|. ..+..|-+. +|||+.|-+|.-.-|..|...||.|+.+|....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 488885 666666432 999999999999999999999999998876543
No 206
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=86.65 E-value=0.81 Score=34.43 Aligned_cols=40 Identities=23% Similarity=0.518 Sum_probs=30.2
Q ss_pred cccccc--CCCCceecCCc-----cccchhhHHHHHhc-CCCCCCCCC
Q 048793 279 CPISLE--LMRNPVVVATG-----QTYDRQSISLWIES-GHNTCPKTG 318 (683)
Q Consensus 279 CPis~~--~m~dPv~~~~g-----~ty~r~~I~~w~~~-g~~~cP~~~ 318 (683)
|-||++ --.+|.+.||. +.+=+.|+++|+.. +..+||.|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 667765 44677777874 56889999999975 467899985
No 207
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=0.43 Score=50.97 Aligned_cols=49 Identities=14% Similarity=0.349 Sum_probs=40.4
Q ss_pred CCCcccccccccCCCCce-----e---cCCccccchhhHHHHHhcC------CCCCCCCCCcc
Q 048793 273 VPADFRCPISLELMRNPV-----V---VATGQTYDRQSISLWIESG------HNTCPKTGQTL 321 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv-----~---~~~g~ty~r~~I~~w~~~g------~~~cP~~~~~l 321 (683)
.-.+..|-||++...+++ . -+|.|+||-.||.+|-... ...||.|+.+.
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 357899999999999988 3 5799999999999998432 35799998764
No 208
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.28 E-value=29 Score=40.78 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=127.2
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR 454 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~ 454 (683)
.|..+|.+. ....+.+|...|-.+...+. + -....|..|+...+. +.+++...---|..-+..+.+-..
T Consensus 39 dL~~lLdSn-kd~~KleAmKRIia~iA~G~-d-----vS~~Fp~VVKNVask----n~EVKkLVyvYLlrYAEeqpdLAL 107 (968)
T KOG1060|consen 39 DLKQLLDSN-KDSLKLEAMKRIIALIAKGK-D-----VSLLFPAVVKNVASK----NIEVKKLVYVYLLRYAEEQPDLAL 107 (968)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhcCC-c-----HHHHHHHHHHHhhcc----CHHHHHHHHHHHHHHhhcCCCcee
Confidence 477888887 66667777766554444343 2 235678899999998 999998887777777655443222
Q ss_pred HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC-
Q 048793 455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD- 533 (683)
Q Consensus 455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~- 533 (683)
+ -|..+-+-|+.. ++..|..|.++|..+ |..+.. .=.+-++-+...+..+.+++.|+.||-.|-.-
T Consensus 108 L-----SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 108 L-----SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred e-----eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence 1 356677778777 688887777777654 333322 12222333445666788999999999998654
Q ss_pred cchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHc-CchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 534 RETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAY-NTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 534 ~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~-g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
++-+.++++ .+=.+|.+. +-++-.|+.+.-..| ++...-+ +-...|..++......+|-....+|..-|+
T Consensus 175 ~e~k~qL~e-----~I~~LLaD~splVvgsAv~AF~evC--PerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 175 PEQKDQLEE-----VIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred hhhHHHHHH-----HHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 444544433 333445543 444555666555444 3333322 234556666666677777777777776665
No 209
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.20 E-value=0.87 Score=30.47 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=25.3
Q ss_pred cHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 504 VVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 504 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
.+|.+++++.+++++++..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999875
No 210
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.58 E-value=1 Score=30.19 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=25.2
Q ss_pred cHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
.+|.+++++.++ ++.++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~----~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP----SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S----SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC----CHHHHHHHHHHHHHHHh
Confidence 379999999999 99999999999998864
No 211
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.18 E-value=0.2 Score=57.31 Aligned_cols=47 Identities=17% Similarity=0.430 Sum_probs=39.5
Q ss_pred cccccccccCCCCceec---CCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 276 DFRCPISLELMRNPVVV---ATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~---~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
.-.||+|..-+.|..+. .|+|.||..||..|..- ..+||.++..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 45899999888887754 89999999999999974 6799999977653
No 212
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.16 E-value=75 Score=37.59 Aligned_cols=136 Identities=16% Similarity=0.114 Sum_probs=73.7
Q ss_pred hhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCC------------------
Q 048793 511 LVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGG------------------ 572 (683)
Q Consensus 511 lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~------------------ 572 (683)
+|.+.++.+...++.+.|.|+...++ .+++.+|+.+|.+..+...-.|..++.++.
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS 368 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence 45566777888889999998775422 245789999998765554444444433321
Q ss_pred cHHHH-----------HHcCchHHHHHHHhc---CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCC
Q 048793 573 LTAIV-----------AAYNTIKKLCILLRE---GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT 638 (683)
Q Consensus 573 ~~e~~-----------~~~g~v~~Lv~lL~~---~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~ 638 (683)
.+..+ ...+.+..+.+-++. .+++ +-|+.+..+|.++... . .-...-.+.-|+.|+.+-+
T Consensus 369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~--~faa~aV~AiGrCA~~--~--~sv~~tCL~gLv~Llsshd 442 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDR--SFAAAAVKAIGRCASR--I--GSVTDTCLNGLVQLLSSHD 442 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHh--h--CchhhHHHHHHHHHHhccc
Confidence 11110 001222333222221 2222 3555555566543221 0 1112345677888888888
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 048793 639 ARARRKAAALLRILRRWAAG 658 (683)
Q Consensus 639 ~~~k~kA~~lL~~l~~~~~~ 658 (683)
..+-..|...++.|-...+.
T Consensus 443 e~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 443 ELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred chhHHHHHHHHHHHHhhChH
Confidence 88777777777776554333
No 213
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=85.11 E-value=0.39 Score=50.92 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=38.7
Q ss_pred cccccccCCCCceecCCccccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793 278 RCPISLELMRNPVVVATGQTYDRQSISLWIES-GHNTCPKTGQTLA 322 (683)
Q Consensus 278 ~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~ 322 (683)
.|-||-+-=+|=-+-||||-.|-.|+..|.++ ++.+||.|+-.+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 79999998888667799999999999999964 5789999986554
No 214
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=84.91 E-value=0.71 Score=34.44 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=20.0
Q ss_pred ccccccCC--CCceec--CCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 279 CPISLELM--RNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 279 CPis~~~m--~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
||+|.+.| +|--+. +||.-+||.|-.+-...++..||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888777 332334 66777777775555555678999999875
No 215
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.76 E-value=4.8 Score=41.68 Aligned_cols=173 Identities=14% Similarity=0.170 Sum_probs=105.6
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhC--cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAG--AIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G--~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
..+...+..- ..+.+.-++..+|.++.+.. .-..+...+ ....+..++........+..+-.++.++.|+-.+...
T Consensus 66 ~~~~~~~~~W-p~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 66 ILLLKILLSW-PPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHCCS--CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhC-CCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 3445555544 45567778888888777654 334444432 3455555555443223677888899999999999888
Q ss_pred HHHHhcccC-cHHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCcchhh--HHhhhcccHHHHHHhhc-C-CChhHHHHH
Q 048793 452 KTRIMETEG-ALNGVIEVLRSGA---TWEAKGNAAATIFSLSGVHAHRK--TLGRKTRVVKGLMDLVK-G-GPTSSKRDA 523 (683)
Q Consensus 452 k~~I~~~~G-~I~~Lv~lL~~~~---~~~~~~~Aa~~L~~Ls~~~~~~~--~i~~~~G~i~~Lv~lL~-~-~~~~~~~~A 523 (683)
+..+....+ .+-..+..+.... +...+..++.+++|++..--... .-.. ...+..+++.+. . .++++.-.+
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhccccCCHHHHHHH
Confidence 888877634 3333333333321 46788888999999986422111 1011 234566666433 2 467888999
Q ss_pred HHHHHHhcCCcchhHHHHhc-CchHHH
Q 048793 524 LVAILNLAGDRETVGRLVER-GIVEIV 549 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~a-G~V~~L 549 (683)
+.||.+|...+.......+. |+-..+
T Consensus 223 LvAlGtL~~~~~~~~~~~~~l~~~~~~ 249 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQLAKSLDVKSVL 249 (268)
T ss_dssp HHHHHHHHCCSHHHHHHCCCCTHHHHH
T ss_pred HHHHHHHhccChhHHHHHHHcChHHHH
Confidence 99999999877776666653 444333
No 216
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=84.58 E-value=22 Score=34.36 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=84.7
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcH-HHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAI-ALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~I-p~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
.++.+...|.+. ++.+|..|+..|..|...+. -+ -.|-+ ..++.+|..+ |++++..|...+..++...
T Consensus 26 ~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~-ik----~k~~l~~~~l~~l~D~----~~~Ir~~A~~~~~e~~~~~- 94 (178)
T PF12717_consen 26 YLPNLYKCLRDE-DPLVRKTALLVLSHLILEDM-IK----VKGQLFSRILKLLVDE----NPEIRSLARSFFSELLKKR- 94 (178)
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCc-ee----ehhhhhHHHHHHHcCC----CHHHHHHHHHHHHHHHHhc-
Confidence 467788999998 99999999999999987643 11 12433 6777888887 9999999999999987552
Q ss_pred hHHHHhcccCcHHHHHHHHhcC--------CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC----CChh
Q 048793 451 NKTRIMETEGALNGVIEVLRSG--------ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG----GPTS 518 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~--------~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~----~~~~ 518 (683)
+...+.. .++.++..|.+. .+.+.+......|...-..++.+..+.. .|..-+.. .++.
T Consensus 95 ~~~~i~~---~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~------kl~~~~~~~~~~~~~~ 165 (178)
T PF12717_consen 95 NPNIIYN---NFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVE------KLCQRFLNAVVDEDER 165 (178)
T ss_pred cchHHHH---HHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHH------HHHHHHHHHcccccHH
Confidence 1222322 355555555532 2344455555555544443445554443 23332221 2445
Q ss_pred HHHHHHHHHHH
Q 048793 519 SKRDALVAILN 529 (683)
Q Consensus 519 ~~~~A~~aL~n 529 (683)
..++++.+|..
T Consensus 166 ~~~d~~~~l~~ 176 (178)
T PF12717_consen 166 VLRDILYCLSC 176 (178)
T ss_pred HHHHHHHHHHC
Confidence 55666665543
No 217
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.54 E-value=2.1 Score=43.26 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHhcccCchhHHHHhcccCc-------HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch-hhHHhhhcc
Q 048793 432 PNLQVNAVTTILNLSILEANKTRIMETEGA-------LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH-RKTLGRKTR 503 (683)
Q Consensus 432 ~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~-------I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~-~~~i~~~~G 503 (683)
..-|..|+.+|..|+..+.|-..|... +- +..|+++|....++-.|+-|..+|.+|+..++. +..++...+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaT-pp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILAT-PPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeC-CCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 356899999999999999998887766 43 334444554444789999999999999998774 445666589
Q ss_pred cHHHHHHhhcCCC
Q 048793 504 VVKGLMDLVKGGP 516 (683)
Q Consensus 504 ~i~~Lv~lL~~~~ 516 (683)
+|..|+..+.+..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999997643
No 218
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=84.53 E-value=0.37 Score=39.26 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=22.7
Q ss_pred cccccccccCCC-C---ceec----CCccccchhhHHHHHhc--C--------CCCCCCCCCccC
Q 048793 276 DFRCPISLELMR-N---PVVV----ATGQTYDRQSISLWIES--G--------HNTCPKTGQTLA 322 (683)
Q Consensus 276 ~f~CPis~~~m~-d---Pv~~----~~g~ty~r~~I~~w~~~--g--------~~~cP~~~~~l~ 322 (683)
+..|+||.+... + |+.+ .||++|=..|+.+||.. + ..+||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 456999987654 2 5544 57899999999999953 1 135999998764
No 219
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=84.17 E-value=0.47 Score=46.91 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=39.6
Q ss_pred cccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCC--CCCccCCCCCcch
Q 048793 276 DFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPK--TGQTLAHTNLVTN 329 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~--~~~~l~~~~l~pn 329 (683)
+.+||||.+...-|++- .|+|.|+|..|++.++- -...||. |.+......++..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d 246 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCD 246 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhh
Confidence 46899999999999865 99999999999999873 1345775 4444444444433
No 220
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=83.49 E-value=53 Score=36.02 Aligned_cols=102 Identities=6% Similarity=0.095 Sum_probs=79.5
Q ss_pred HHhcccCcHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc-CCC---hhHHHHHHHHH
Q 048793 454 RIMETEGALNGVIEVLRSGA--TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK-GGP---TSSKRDALVAI 527 (683)
Q Consensus 454 ~I~~~~G~I~~Lv~lL~~~~--~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~-~~~---~~~~~~A~~aL 527 (683)
.+++....+..|..++++.. ...+-..|+.++..+-..+.....+..++|.++.+++-+. .+- .++...--.+|
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 34452145666777777631 2567788999999998888888888777999999999888 543 44556666788
Q ss_pred HHhcCCcchhHHHHhcCchHHHHHHhcc
Q 048793 528 LNLAGDRETVGRLVERGIVEIVAEAMDV 555 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~ 555 (683)
..||.+..+..++.+.+.++.+++++.+
T Consensus 180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 180 SAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred hHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 8899999999999999999999999874
No 221
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=83.40 E-value=4.1 Score=39.49 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=64.5
Q ss_pred hHHHHhcccCcHHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793 451 NKTRIMETEGALNGVIEVLRS--------GATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRD 522 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~--------~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~ 522 (683)
--...++. ||+..|+.+|.. +.+......+..+|..|.....+...+....+++..|+..|.+.+..++..
T Consensus 99 Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 99 WVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred HHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 34566676 899999999862 123567778999999999998888888888999999999999999999999
Q ss_pred HHHHHHHhc
Q 048793 523 ALVAILNLA 531 (683)
Q Consensus 523 A~~aL~nLs 531 (683)
|+..|..+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 222
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.07 E-value=4.8 Score=46.94 Aligned_cols=137 Identities=20% Similarity=0.188 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch-hHHHHhcccCcHHHHHH
Q 048793 389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA-NKTRIMETEGALNGVIE 467 (683)
Q Consensus 389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~k~~I~~~~G~I~~Lv~ 467 (683)
..+++.++++|+..+...|..|.+.-+++.+-.++..+ ++..|..++..+.||..++. ....|++....++....
T Consensus 559 n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee----~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~ 634 (748)
T KOG4151|consen 559 NFEALEALTNLASISESDRQKILKEKALGKIEELMTEE----NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNL 634 (748)
T ss_pred HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc----cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHH
Confidence 46788999999999988888888877777766666666 88999999999999987764 46667764467777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 468 VLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 468 lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
.+... .......+++++.-+....+ .+..+-+...+...++.++.+++...+.-.+..+.|+
T Consensus 635 ~~e~~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 635 NLEVA-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred HHHhh-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 76664 56667777777775555544 4443555567888999999988888877777666664
No 223
>PF04641 Rtf2: Rtf2 RING-finger
Probab=82.87 E-value=1.3 Score=45.89 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=32.5
Q ss_pred CCcccccccccCCCCceec-CCccccchhhHHHHHhc
Q 048793 274 PADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES 309 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~ 309 (683)
-.|++|+||++.+.+||+. .-|+-|.+..|-+|+-.
T Consensus 32 ~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 32 ARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred CCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 4689999999999999865 78999999999999965
No 224
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=82.79 E-value=0.79 Score=47.63 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=33.9
Q ss_pred CcccccccccCC--CCceec--CCccccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793 275 ADFRCPISLELM--RNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN 325 (683)
Q Consensus 275 ~~f~CPis~~~m--~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~ 325 (683)
+++ ||+|.+.| .|--.. +||...||-|--.--+.-+..||.||..++...
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 455 99999998 344444 678777776643332333679999998877654
No 225
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=82.66 E-value=40 Score=40.57 Aligned_cols=200 Identities=16% Similarity=0.104 Sum_probs=107.5
Q ss_pred HhhhhHHHHHHHhccCC----CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCC----hhhHHHHH
Q 048793 368 ATKMTASFLINKLATSQ----SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRL----PNLQVNAV 439 (683)
Q Consensus 368 ~~~~~i~~Lv~~L~s~~----~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d----~~~qe~A~ 439 (683)
+..|++..++++|.+.. +.+.....+..|+.+++- ..||..+.+.|+++.|+..|......+. ..+-+.-+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 35677888888886531 344555566666667765 5699999999999999988752211112 34445444
Q ss_pred HHHHhcccCchh---HH--HHhcccC----c---HHHHHHHHhcC---CCHHHHHHHHHHHHHhhcCc------------
Q 048793 440 TTILNLSILEAN---KT--RIMETEG----A---LNGVIEVLRSG---ATWEAKGNAAATIFSLSGVH------------ 492 (683)
Q Consensus 440 ~aL~nLs~~~~~---k~--~I~~~~G----~---I~~Lv~lL~~~---~~~~~~~~Aa~~L~~Ls~~~------------ 492 (683)
.++-.|...... .. ......| . +..+++.+.+. .++......+++|-+|+..+
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK 272 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence 444443221110 00 0001101 2 33333333321 13455555566665555443
Q ss_pred -------------------------------------chhhHHhhhcccHHHHHHhhcCCCh----------------hH
Q 048793 493 -------------------------------------AHRKTLGRKTRVVKGLMDLVKGGPT----------------SS 519 (683)
Q Consensus 493 -------------------------------------~~~~~i~~~~G~i~~Lv~lL~~~~~----------------~~ 519 (683)
.-|..|.. .|++...++.|...-+ ..
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 23455555 6777777766643211 23
Q ss_pred HHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc--cCch---hHHHHHHHHHH
Q 048793 520 KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD--VLPE---ESVTILEAVVK 569 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~--~~~~---~~~~aL~~L~~ 569 (683)
...++..|..||..+..-+.++..++++.+..+=. +..+ .++..|..|..
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 45677788888887776666676777744433322 1111 25555555544
No 226
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.56 E-value=4.6 Score=36.63 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=57.6
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh-----cC---CHHHHHHHHHHHHHHHh
Q 048793 583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELME-----SG---TARARRKAAALLRILRR 654 (683)
Q Consensus 583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~-----~~---~~~~k~kA~~lL~~l~~ 654 (683)
...|.+-|...++.+|-+|+.+|..+|.+++....+.+.....++..+.+... .| +..+|.+|..++..+..
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 56777888888999999999999999999877666666666667777776654 23 46899999999998865
No 227
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=82.46 E-value=11 Score=38.82 Aligned_cols=96 Identities=7% Similarity=0.097 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhcc-cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHh
Q 048793 434 LQVNAVTTILNLS-ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDL 511 (683)
Q Consensus 434 ~qe~A~~aL~nLs-~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~l 511 (683)
....|+.+|.-++ .|+..|...... .+++.++.+|....++.++.++..+|..+.. ...|...+-. .+|+..++.+
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~l 184 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHHH
Confidence 4566778887777 577788777776 8999999999654367888888888876654 4556665555 8999999999
Q ss_pred hcCCC--hhHHHHHHHHHHHhc
Q 048793 512 VKGGP--TSSKRDALVAILNLA 531 (683)
Q Consensus 512 L~~~~--~~~~~~A~~aL~nLs 531 (683)
+++.. .+.+-.++..|+-..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HccccccHHHhHHHHHHHHHHH
Confidence 98764 345555555555443
No 228
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=82.45 E-value=4.2 Score=33.35 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc--hhHHHHHHHHHHcCCcHHHHH
Q 048793 520 KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP--EESVTILEAVVKRGGLTAIVA 578 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~--~~~~~aL~~L~~l~~~~e~~~ 578 (683)
.|.|++|+.+++..+.+...+-+.++|+.++++....+ .....|..+|..++...++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~ 64 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAE 64 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHH
Confidence 58899999999999989888888999999999987543 346667777777777776654
No 229
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=81.96 E-value=19 Score=41.44 Aligned_cols=161 Identities=17% Similarity=0.092 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHH---hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCc
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAE---AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGA 461 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~---~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~ 461 (683)
.++.+.-|+..||.+.++...+-..+-. ...+..++..+. . ++..+-.++.+|.|+-.+..++..+......
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~----~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~ 631 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A----DPANQLLVVRCLANLFSNPAGRELFMSRLES 631 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c----chhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5788899999999999887654433331 235556666665 4 6788889999999999887777766653112
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhhcC-----CChhHHHHHHHHHHHhcCCc
Q 048793 462 LNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLVKG-----GPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs~~~ 534 (683)
+-..+--.+++.+...+...+...+|++.. ..+-. + |..+.|...+.. .+-++.-.++.||.+|+..+
T Consensus 632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-~----~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-L----EGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-c----chHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 222222233443345555555555666542 22221 2 333333333322 12245667788999999988
Q ss_pred chhHHHHhcCchHHHHHHhcc
Q 048793 535 ETVGRLVERGIVEIVAEAMDV 555 (683)
Q Consensus 535 ~n~~~iv~aG~V~~Lv~lL~~ 555 (683)
.+..++...=-|..+++.+.+
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 888888776677777777753
No 230
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.89 E-value=63 Score=32.82 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=77.3
Q ss_pred HHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch
Q 048793 416 IALLARHLGPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH 494 (683)
Q Consensus 416 Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~ 494 (683)
+|.|+.-+... .+++.+...+.+|-.++.++ .+... ++..|+.+...+ +.+.+.-+.+.+..+-..++-
T Consensus 2 l~~L~~~l~~~---~~~~~~~~~L~~L~~l~~~~~~~~~~------v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r 71 (234)
T PF12530_consen 2 LPLLLYKLGKI---SDPELQLPLLEALPSLACHKNVCVPP------VLQTLVSLVEQG-SLELRYVALRLLTLLWKANDR 71 (234)
T ss_pred hHHHHHHhcCC---CChHHHHHHHHHHHHHhccCccchhH------HHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCch
Confidence 45555533332 28899999999999999877 33333 344466666666 456555566666666543321
Q ss_pred hhHHhhhcccHHHHHHh-----h---cCCC--hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHh-ccCch-hHHH
Q 048793 495 RKTLGRKTRVVKGLMDL-----V---KGGP--TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAM-DVLPE-ESVT 562 (683)
Q Consensus 495 ~~~i~~~~G~i~~Lv~l-----L---~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL-~~~~~-~~~~ 562 (683)
.. +.+..++.. . .+++ .+..-..+.++..+|...++ .-...++.+..+| .++.+ ....
T Consensus 72 ~f------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~al 141 (234)
T PF12530_consen 72 HF------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQAL 141 (234)
T ss_pred HH------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHH
Confidence 11 234434333 1 1111 22334446788888887666 2223577788888 44333 3556
Q ss_pred HHHHHHHcC
Q 048793 563 ILEAVVKRG 571 (683)
Q Consensus 563 aL~~L~~l~ 571 (683)
++..|..++
T Consensus 142 ale~l~~Lc 150 (234)
T PF12530_consen 142 ALEALAPLC 150 (234)
T ss_pred HHHHHHHHH
Confidence 666666666
No 231
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=81.54 E-value=50 Score=37.37 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCCh----hHHHHHHHHHHHhcCCcchh
Q 048793 462 LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPT----SSKRDALVAILNLAGDRETV 537 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n~ 537 (683)
...+.+++.+| +...+..|...|.+|+.+......+.. ..++..|..++.+|+. ......++++..|-.+.-.-
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34577788888 688888899999999999888777777 6789999999998864 34556666666654433222
Q ss_pred HHHHhcCchHHHHHHhcc---CchhHHHHHHHHHHc--CCcH--HHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 538 GRLVERGIVEIVAEAMDV---LPEESVTILEAVVKR--GGLT--AIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 538 ~~iv~aG~V~~Lv~lL~~---~~~~~~~aL~~L~~l--~~~~--e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
...+....|...+.+..- +...-..||.+|-.+ +++. ..+...--+..|+..++.++.+.+.+|.+.+-++..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 222333333333333321 122356677777553 2321 223333447788888888888888888888888876
Q ss_pred cCCc
Q 048793 611 KGGS 614 (683)
Q Consensus 611 ~~~~ 614 (683)
..++
T Consensus 243 ~a~~ 246 (713)
T KOG2999|consen 243 KAPD 246 (713)
T ss_pred hCCh
Confidence 6554
No 232
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=81.53 E-value=17 Score=40.87 Aligned_cols=156 Identities=12% Similarity=0.032 Sum_probs=101.5
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK 452 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k 452 (683)
+..+.+.+.++ +...+..|+..|..++.+.. -...+....++..|..+..++-......+....++++..+-.+.-.-
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34577888888 88888889999999988665 45556667778899999988721113355566666666654332211
Q ss_pred HHHhcccCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793 453 TRIMETEGALNGVIEVLRS-GATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA 531 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~-~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
...+.. .+|..++.+.+- ..+..+...|...|-++...+......+...--+..|+..|...+.+....|...|-.|-
T Consensus 163 W~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 222222 344444444431 113556678889999988877744444444788999999999888777766665555553
No 233
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.29 E-value=35 Score=39.98 Aligned_cols=130 Identities=14% Similarity=0.107 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNG 464 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~ 464 (683)
+...|.--+..|+..+..++.-+ ...|..+..+|.++ ++.+.-.|+.+|.+|+.++..-+.- ...
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~st----ssaV~fEaa~tlv~lS~~p~alk~A------a~~ 283 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSST----SSAVIFEAAGTLVTLSNDPTALKAA------AST 283 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcC----CchhhhhhcceEEEccCCHHHHHHH------HHH
Confidence 46667777777887777655332 34678899999988 7777777888888887665433222 223
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793 465 VIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 465 Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
++.++-...+-.++-...--|..+. .+...|. .|.+--.+++|...+-++++.++.....|+.+.
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l~---~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 4444432222333332222233332 3333333 255666666677666677777777776665543
No 234
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=81.22 E-value=0.4 Score=56.05 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=38.8
Q ss_pred ccccccccCCCCceecCCccccchhhHHHHHhc-CCCCCCCCCCccCC
Q 048793 277 FRCPISLELMRNPVVVATGQTYDRQSISLWIES-GHNTCPKTGQTLAH 323 (683)
Q Consensus 277 f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~~ 323 (683)
+.|++|.+ ..+++++.|||.+|+.|+.+-++. +...||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 899999999999999999998864 33479999865543
No 235
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.47 E-value=17 Score=34.44 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=84.9
Q ss_pred HHHHHhcc-CCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc-cCchhH
Q 048793 375 FLINKLAT-SQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS-ILEANK 452 (683)
Q Consensus 375 ~Lv~~L~s-~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs-~~~~~k 452 (683)
.++..|.. ...++.+..|+-.+..+- +..+....+. .-..+-.++..+ +.+....++.++..|- ...+..
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~----~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEG----EMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCH----HCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccc----cchhHHHHHHHHHHHhCCCHHHH
Confidence 34444443 224556666665555552 2233333221 223334445544 4445566777776654 345666
Q ss_pred HHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hh-HHHHHHHHHHH
Q 048793 453 TRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TS-SKRDALVAILN 529 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~-~~~~A~~aL~n 529 (683)
..|...+|.++.++.+.. .+.+......++.+|..=|.+...|..|.. .+++.|-++++.+. +. .+..|+..|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 777766699999999998 232566666666666655555556666654 67999999996544 44 56667666653
No 236
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.86 E-value=34 Score=40.04 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793 505 VKGLMDLVKGGPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
|..+..+|.+.++.+.-.|+.+|.+|+..+
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 444445554444444444555555554443
No 237
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=79.75 E-value=78 Score=39.23 Aligned_cols=267 Identities=15% Similarity=0.139 Sum_probs=139.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC----
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL---- 448 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~---- 448 (683)
++.+.+.+++-...+.+.+|+.-|..|+..-++- ..=-.++|.++.++... +..+|..|+.+|..+-..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds----~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDS----EADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCc----hHHHHHHHHHHHHHHHhhccCC
Confidence 3444444443225678899999999988754311 11236899999999998 899999999888776321
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc------------------chhhHHhh---------h
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH------------------AHRKTLGR---------K 501 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~------------------~~~~~i~~---------~ 501 (683)
..+-..|.-. =.+|.|-.++......-+|..=|..|..|+... .+-....+ -
T Consensus 497 ~~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L 575 (1431)
T KOG1240|consen 497 PPSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL 575 (1431)
T ss_pred CcccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHH
Confidence 2222334333 477888888876322334443344444443211 01100000 0
Q ss_pred cccHHHHH-HhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhc----CchHHHHHHhccCchh-HHHHHHHHHHcCCcHH
Q 048793 502 TRVVKGLM-DLVKGGPTSSKRDALVAILNLAGDRETVGRLVER----GIVEIVAEAMDVLPEE-SVTILEAVVKRGGLTA 575 (683)
Q Consensus 502 ~G~i~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a----G~V~~Lv~lL~~~~~~-~~~aL~~L~~l~~~~e 575 (683)
...|..+| .+|.+..+-++..-+..|.-||.. +.+. =+++.|+..|++.... ...-...+.-++..-.
T Consensus 576 ~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 576 HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 01222222 334433334555445555555542 1111 1345556666543211 1111111111110000
Q ss_pred HH-HHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 576 IV-AAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 576 ~~-~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
-+ ....-+|.|..-|..+.+-+-.+|..+|..||..+-- +.. ..-.+++...-++-+.+.=+|+.+..++-...+
T Consensus 650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll---~K~-~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL---RKP-AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc---chH-HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 00 1112245555556667888899999999999986431 111 012345555667888999999999988877666
Q ss_pred hhc
Q 048793 655 WAA 657 (683)
Q Consensus 655 ~~~ 657 (683)
+-.
T Consensus 726 ~ls 728 (1431)
T KOG1240|consen 726 QLS 728 (1431)
T ss_pred hhh
Confidence 443
No 238
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.74 E-value=4.7 Score=40.77 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhcCcchhhHHhhhc------ccHHHHHHhhcCC-ChhHHHHHHHHHHHhcCCcchhHHH--HhcCc
Q 048793 475 WEAKGNAAATIFSLSGVHAHRKTLGRKT------RVVKGLMDLVKGG-PTSSKRDALVAILNLAGDRETVGRL--VERGI 545 (683)
Q Consensus 475 ~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~------G~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~i--v~aG~ 545 (683)
..-+..|..+|..||..+.|-..|..+. ..+..|+++|... ++-.++-|+..|.||+..++...++ .+.++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3467899999999999999988886621 2566677777654 4568899999999999988855444 56799
Q ss_pred hHHHHHHhcc
Q 048793 546 VEIVAEAMDV 555 (683)
Q Consensus 546 V~~Lv~lL~~ 555 (683)
|..|+..+.+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 239
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.15 E-value=79 Score=35.43 Aligned_cols=158 Identities=10% Similarity=-0.029 Sum_probs=90.7
Q ss_pred HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 412 EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 412 ~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
+.|.+..++..|.....+++..++..|+..|.|.+.. ++.+..... -.+..++.-|-.+.+.++.-.|..+|..+..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~--~~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT--TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 3455555555444332333678899999999999877 444333333 3566777777666667777777777776665
Q ss_pred CcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHH--Hh--cCchHHHHHHhccCchhHHHHHHH
Q 048793 491 VHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRL--VE--RGIVEIVAEAMDVLPEESVTILEA 566 (683)
Q Consensus 491 ~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i--v~--aG~V~~Lv~lL~~~~~~~~~aL~~ 566 (683)
...+.....---.+.-.+..+..+.+++.+.+|..+...|+.......++ .+ -|...+++-.|.+.......|...
T Consensus 330 ~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 330 KASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred hhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 44333332111123444556677888888888888888887754443333 32 122233333444333334444444
Q ss_pred HHHcC
Q 048793 567 VVKRG 571 (683)
Q Consensus 567 L~~l~ 571 (683)
....+
T Consensus 410 ~~~~c 414 (533)
T KOG2032|consen 410 ELRTC 414 (533)
T ss_pred HHHhc
Confidence 44433
No 240
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=79.04 E-value=42 Score=34.58 Aligned_cols=183 Identities=13% Similarity=0.050 Sum_probs=105.3
Q ss_pred HHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCc-HHHHHHHHhcC---CCHHHHHHHHHHHHHhhcC
Q 048793 416 IALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGA-LNGVIEVLRSG---ATWEAKGNAAATIFSLSGV 491 (683)
Q Consensus 416 Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~-I~~Lv~lL~~~---~~~~~~~~Aa~~L~~Ls~~ 491 (683)
+..+..++.+= ..+-+--++..+.-+..+...-..+....++ ...+..++..+ ..+..+--+++++.|+-..
T Consensus 65 ~~~~~~~~~~W----p~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~ 140 (268)
T PF08324_consen 65 LILLLKILLSW----PPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH 140 (268)
T ss_dssp HHHHHHHHCCS-----CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhC----CCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC
Confidence 34455555443 4455777888887777776665555444233 55566666543 2577888899999999999
Q ss_pred cchhhHHhhhcc-cHHHHHHhhcCC----ChhHHHHHHHHHHHhcCCcc-hh-HHHHhcCchHHHHHHhc---cCchhHH
Q 048793 492 HAHRKTLGRKTR-VVKGLMDLVKGG----PTSSKRDALVAILNLAGDRE-TV-GRLVERGIVEIVAEAMD---VLPEESV 561 (683)
Q Consensus 492 ~~~~~~i~~~~G-~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~-n~-~~iv~aG~V~~Lv~lL~---~~~~~~~ 561 (683)
...+..+....+ .|...+..+... +...+..+++.++|++..-- ++ ..-.....+..+++.+. .++|..-
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~ 220 (268)
T PF08324_consen 141 PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALY 220 (268)
T ss_dssp CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHH
T ss_pred CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHH
Confidence 988888877555 555555555444 56688899999999986422 11 11122234555666433 2345566
Q ss_pred HHHHHHHHcCCc-HHHHHHcC--chHHHHHHH--hcCChHHHHHHH
Q 048793 562 TILEAVVKRGGL-TAIVAAYN--TIKKLCILL--REGSDTSRESAA 602 (683)
Q Consensus 562 ~aL~~L~~l~~~-~e~~~~~g--~v~~Lv~lL--~~~s~~~ke~A~ 602 (683)
+++..|.++... ........ ++...+... ....++.++.+.
T Consensus 221 R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 221 RLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 666666554433 33333222 233333322 234556665554
No 241
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.70 E-value=71 Score=33.12 Aligned_cols=218 Identities=11% Similarity=0.030 Sum_probs=123.2
Q ss_pred HHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhc
Q 048793 378 NKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIME 457 (683)
Q Consensus 378 ~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~ 457 (683)
..|.+. ++..|.+|+..|......-+... ....-+..|+.++.+... |......++.++..|..........+.
T Consensus 6 ~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 6 EYLTSE-DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESAV 79 (262)
T ss_pred hhhCCC-CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhHH
Confidence 456777 88999999988887766554222 222346677777655432 555555667777666533221111111
Q ss_pred ccCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCC-ChhHHHHHHHHHHHhcCCc
Q 048793 458 TEGALNGVIEVLRS-GATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGG-PTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 458 ~~G~I~~Lv~lL~~-~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~ 534 (683)
..+..+.+-..- ......|...-.+|..|..... .-..++ .+.+..+++++..+ +|+....+...+..+...-
T Consensus 80 --~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 80 --KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred --HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 122222221110 1124566777777777765432 222233 46788888888654 6888777777777765533
Q ss_pred chhHHHHhcCchHHHHHHhc--------c---Cc-hh-HHH-HHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHH
Q 048793 535 ETVGRLVERGIVEIVAEAMD--------V---LP-EE-SVT-ILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 535 ~n~~~iv~aG~V~~Lv~lL~--------~---~~-~~-~~~-aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
+ . ...++-+.+.+. . ++ .. .+. ..+....+++++... .-.+|.|+.-|.+.++.+|.-
T Consensus 156 ~-----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa--~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 156 D-----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA--PFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred c-----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH--HHHHHHHHHHHcCCCcHHHHH
Confidence 3 1 334455555554 1 11 11 222 222223344444332 235899999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 048793 601 AAATLVTICRKGG 613 (683)
Q Consensus 601 A~~aL~~L~~~~~ 613 (683)
+..+|...+..-+
T Consensus 228 ~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 228 SLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHCC
Confidence 9999888765444
No 242
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.43 E-value=1.4 Score=45.56 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=34.7
Q ss_pred ccccccccCCCC---ceecCCccccchhhHHHHHhcCC--CCCCCCC
Q 048793 277 FRCPISLELMRN---PVVVATGQTYDRQSISLWIESGH--NTCPKTG 318 (683)
Q Consensus 277 f~CPis~~~m~d---Pv~~~~g~ty~r~~I~~w~~~g~--~~cP~~~ 318 (683)
|+||+..+.-+| ||+..|||..-+.+...--+.|. ..||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 899999888765 89999999999988877766664 4688883
No 243
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=78.22 E-value=52 Score=34.66 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=104.1
Q ss_pred HHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc--CchhHH--
Q 048793 378 NKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI--LEANKT-- 453 (683)
Q Consensus 378 ~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~--~~~~k~-- 453 (683)
..+.+. ++.+|..|+.+|..++--+. .. +. ..++.+...+..+ +..++..|+.++..+.. +.+.-.
T Consensus 34 P~v~~~-~~~vR~~al~cLGl~~Lld~---~~-a~-~~l~l~~~~~~~~----~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 34 PAVQSS-DPAVRELALKCLGLCCLLDK---EL-AK-EHLPLFLQALQKD----DEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHhcCC-CHHHHHHHHHHHHHHHHhCh---HH-HH-HHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHcCchhccch
Confidence 566777 89999999999999887654 22 21 2467788888776 88999999999998753 211111
Q ss_pred -----HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC---hhHHHHHHH
Q 048793 454 -----RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP---TSSKRDALV 525 (683)
Q Consensus 454 -----~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~---~~~~~~A~~ 525 (683)
..... ..+..+.+.|.+. +++++..|+..+..|--.+.... ...++..|+-+--++. ..-.+.++.
T Consensus 104 ~~~~~~~~~~-~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 104 SDNDESVDSK-SLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred hccCccchHh-HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11122 5777888888888 78999999999998876544333 1344555554433321 123344444
Q ss_pred HHH-HhcCCcchhHHHHhcCchHHHHHHhc
Q 048793 526 AIL-NLAGDRETVGRLVERGIVEIVAEAMD 554 (683)
Q Consensus 526 aL~-nLs~~~~n~~~iv~aG~V~~Lv~lL~ 554 (683)
..+ ..|......+..+..+.++.+-.+..
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 444 45665554556666667777766665
No 244
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=78.20 E-value=62 Score=38.78 Aligned_cols=216 Identities=15% Similarity=0.096 Sum_probs=131.9
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHH
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMD 510 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~ 510 (683)
.+...-.|.+++...+...-....+... .+...+..+.-...+..+..|+++++.-+...--.... .+++..|..
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~---p~ild~L~q 537 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQ---PMILDGLLQ 537 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccc---hHHHHHHHH
Confidence 5555557777776555332111222222 45555666654435678888888888777333222222 578888888
Q ss_pred hhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc---cCchhHH---HHHHHHHHcCCcHHHHHHcCchH
Q 048793 511 LVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD---VLPEESV---TILEAVVKRGGLTAIVAAYNTIK 584 (683)
Q Consensus 511 lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~---~~~~~~~---~aL~~L~~l~~~~e~~~~~g~v~ 584 (683)
+....+.++......+|...|..+.......++-+.|..+.+.. +++..+. ..+.-|...+.+. +-.....+|
T Consensus 538 las~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~m~e~~iP 616 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GPMQERLIP 616 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cchHHHHHH
Confidence 88877777888888899999988777777777788888887764 3343333 3333333311111 112223589
Q ss_pred HHHHHHhcCC----hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHH-hhcCCHHHHHHHHHHHHHHHh
Q 048793 585 KLCILLREGS----DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWEL-MESGTARARRKAAALLRILRR 654 (683)
Q Consensus 585 ~Lv~lL~~~s----~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~L-l~~~~~~~k~kA~~lL~~l~~ 654 (683)
.|+..|.... +....-|..+|..+-++.+...... +. .-+.|.+... +++++..+-..|...|+.+=.
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~-l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL-LI-CYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH-HH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 9999987533 4455667777777878777643222 22 2345556654 666777777888888887644
No 245
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=77.73 E-value=21 Score=40.92 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccCc
Q 048793 383 SQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEGA 461 (683)
Q Consensus 383 ~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~ 461 (683)
+ +..++.-|+.-|..+.++-++... .+|..+++|.... |..++..|+..|-.+|.+. +....|
T Consensus 34 g-~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDe----d~~iR~~aik~lp~~ck~~~~~v~kv------ 97 (556)
T PF05918_consen 34 G-SPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDE----DVQIRKQAIKGLPQLCKDNPEHVSKV------ 97 (556)
T ss_dssp S--HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-S----SHHHHHHHHHHGGGG--T--T-HHHH------
T ss_pred C-CHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc----cHHHHHHHHHhHHHHHHhHHHHHhHH------
Confidence 5 788888999999999988886553 4678899999998 9999999999999999863 444444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 462 LNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
...|+++|.+. ++......-.+|..|-.
T Consensus 98 aDvL~QlL~td-d~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 98 ADVLVQLLQTD-DPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cHHHHHHHHHHHHHHHh
Confidence 44588899877 55555555555555543
No 246
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.32 E-value=1.5 Score=46.64 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=33.6
Q ss_pred CCcccccccccCCCCc---e-ecCCccccchhhHHHHHhcC--CCCCCCCCCcc
Q 048793 274 PADFRCPISLELMRNP---V-VVATGQTYDRQSISLWIESG--HNTCPKTGQTL 321 (683)
Q Consensus 274 p~~f~CPis~~~m~dP---v-~~~~g~ty~r~~I~~w~~~g--~~~cP~~~~~l 321 (683)
|..-.|-||-+....- - +-.|||+|.-.|+++||+.. +.+||.|+-.+
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4455688886554221 1 23599999999999999852 35899998443
No 247
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.92 E-value=0.84 Score=34.59 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=32.2
Q ss_pred cccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCcc
Q 048793 278 RCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 278 ~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
-|-||.+--.|.|+-.|||. .|-.|=.+-+..++..||.|+.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999998889999999995 233333333344788999999764
No 248
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.65 E-value=11 Score=35.35 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=59.5
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES-GTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|.+.++.++-.|..+|-.+..++|.....+ +....++..|..++.. ..+.+|+++..+++....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE-VASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999988888755444 5567899999999888 688999998888877765
No 249
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=76.27 E-value=28 Score=38.67 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=80.2
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-ch-------------hHHHHhcccCcHHHHHHHHhcCCCHHHHH
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EA-------------NKTRIMETEGALNGVIEVLRSGATWEAKG 479 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~-------------~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~ 479 (683)
..+..|+.+|++. ++...|+.++.-|..+ ++ +|+++... .+|.|++-.+.. +.+.+.
T Consensus 271 ~~~~~L~~lL~~~------~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~--~~p~L~~~~~~~-~~~~k~ 341 (415)
T PF12460_consen 271 ELLDKLLELLSSP------ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ--VLPKLLEGFKEA-DDEIKS 341 (415)
T ss_pred HHHHHHHHHhCCh------hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH--HHHHHHHHHhhc-ChhhHH
Confidence 3466677777764 5566677777666554 22 14455543 688888888766 456888
Q ss_pred HHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793 480 NAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 480 ~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
+-..+|.++..+-.......+-...+|.|++-|..++...+..++.+|..+....
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8888888888765555555554668888899998888889999999999887755
No 250
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=75.64 E-value=5.9 Score=37.64 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHH-HHHhCcHHHHHHhhC--CCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCc
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRAC-IAEAGAIALLARHLG--PDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGA 461 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~-i~~~G~Ip~Lv~lL~--s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~ 461 (683)
+.+....+...+..+--..++--.. +...|.++.++.+.. +. +..++..++.+|..-|.+..-|..|.+. +
T Consensus 56 ~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~----~~~~~~~~lell~aAc~d~~~r~~I~~~--~ 129 (157)
T PF11701_consen 56 EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSK----DRKVQKAALELLSAACIDKSCRTFISKN--Y 129 (157)
T ss_dssp HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-----HHHHHHHHHHHHHHTTSHHHHHCCHHH--C
T ss_pred cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccC----CHHHHHHHHHHHHHHHccHHHHHHHHHH--H
Confidence 3445566666666655444444333 345699999999998 55 7888888888776666676667777665 7
Q ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHh
Q 048793 462 LNGVIEVLRSGATWE-AKGNAAATIFSL 488 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~-~~~~Aa~~L~~L 488 (683)
++-|-++++++.+.. .|..|+-.|..|
T Consensus 130 ~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 130 VSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 899999997654455 677777776543
No 251
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.63 E-value=12 Score=34.97 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=61.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccC-chhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTD-SDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~-~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
+.++..|.+.|.++ ++.++..|+..|-.+.+.. ..-...+...+.+..|+.++... .++.++..++..+.+++.
T Consensus 40 k~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT---KNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc---CCHHHHHHHHHHHHHHHH
Confidence 45667788999998 9999999999999999875 33566777889999999999753 278999999999998873
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.57 E-value=16 Score=43.06 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=33.1
Q ss_pred CcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCC
Q 048793 275 ADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQ 319 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~ 319 (683)
..-.|..|.-.+.=|++- .|||.|-+.|.+ ++...||+|..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 335788888888888765 999999998877 56788999975
No 253
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.56 E-value=2.1 Score=45.47 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=40.6
Q ss_pred ccccccccCCCC---ceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793 277 FRCPISLELMRN---PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT 324 (683)
Q Consensus 277 f~CPis~~~m~d---Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~ 324 (683)
+.|.||++.|-| |++.|+|++|-..+|+.|-..++-+||.+++.+...
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 589999999965 889999999999999999876557899999876543
No 254
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.43 E-value=31 Score=40.60 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=110.0
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHH-hhcCcchhhHHhhhcccHHHHHHhhcCCCh-hHHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFS-LSGVHAHRKTLGRKTRVVKGLMDLVKGGPT-SSKRDALV 525 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~-Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~-~~~~~A~~ 525 (683)
....+..+++. |+.+.|..+...+ ..+++..+..+|.. ++.. ..+ ....++++-..+.+... -..-.++.
T Consensus 493 ~K~~~~~~Ik~-~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~-~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 493 EKYERAKKIKP-GGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFP-GER-----SYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred hHHhcCccccc-cHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCC-CCc-----hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 44445566675 9999999999888 68888888888872 1111 111 13456666666654432 23467899
Q ss_pred HHHHhcCCcc-hhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHHHcCCcHHHHHHc-----CchHHHHHHHhcCChHHH
Q 048793 526 AILNLAGDRE-TVGRLVERGIVEIVAEAMDV-LPEESVTILEAVVKRGGLTAIVAAY-----NTIKKLCILLREGSDTSR 598 (683)
Q Consensus 526 aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~~l~~~~e~~~~~-----g~v~~Lv~lL~~~s~~~k 598 (683)
+|.||+...+ .+.++++.-+++-+-+++.+ ++.....++..+.++--.+...... .+.+.....+.....+..
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~ 644 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE 644 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence 9999988655 67788877666655555543 3445666777776655444332221 234444444444444455
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHH
Q 048793 599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKA 645 (683)
Q Consensus 599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA 645 (683)
-.+++++..|.....+.... ...-......++.+..++.+.+|..-
T Consensus 645 lA~a~a~a~I~sv~~n~c~~-~~~~~~~~e~~~~~i~~~~~~~qhrg 690 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENHCSR-ILELLEWLEILVRAIQDEDDEIQHRG 690 (748)
T ss_pred hhccccccchhhcchhhhhh-HHHhhcchHHHHHhhcCchhhhhhhh
Confidence 55555555555443332211 23333455667777777777776443
No 255
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=74.34 E-value=17 Score=38.43 Aligned_cols=165 Identities=12% Similarity=0.045 Sum_probs=103.0
Q ss_pred CcHHHHH-HhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 414 GAIALLA-RHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 414 G~Ip~Lv-~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
+.+..|+ .-+.+. ++.+++.|+.+|+-.+.-+. .+.. ..++.+...++++ +.+++..|+.+|+.+....
T Consensus 26 ~ll~~lI~P~v~~~----~~~vR~~al~cLGl~~Lld~---~~a~--~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSS----DPAVRELALKCLGLCCLLDK---ELAK--EHLPLFLQALQKD-DEEVKITALKALFDLLLTH 95 (298)
T ss_pred HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhCh---HHHH--HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHc
Confidence 4454444 667787 89999999999998886544 2333 2577888888877 7999999999999887543
Q ss_pred chhh---------HHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhcc----Cchh
Q 048793 493 AHRK---------TLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDV----LPEE 559 (683)
Q Consensus 493 ~~~~---------~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~----~~~~ 559 (683)
.... .... ...+..+.+.|.+.+++.+..|+..+..|-.++.... ...++..|+-+-.+ +...
T Consensus 96 g~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~ 171 (298)
T PF12719_consen 96 GIDIFDSESDNDESVDS-KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQR 171 (298)
T ss_pred CchhccchhccCccchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHH
Confidence 2111 1222 4577788888888888888889998888766543222 12333334333321 1234
Q ss_pred HHHHHHHHHH-cC-CcH--HHHHHcCchHHHHHHHhc
Q 048793 560 SVTILEAVVK-RG-GLT--AIVAAYNTIKKLCILLRE 592 (683)
Q Consensus 560 ~~~aL~~L~~-l~-~~~--e~~~~~g~v~~Lv~lL~~ 592 (683)
...+|+..-- .+ .+. +.....+.++.+..+...
T Consensus 172 LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 172 LRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 5566666532 22 222 223333456666666553
No 256
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=73.65 E-value=85 Score=34.79 Aligned_cols=184 Identities=10% Similarity=0.150 Sum_probs=109.0
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh-cCCChhHHHHHHHHHHHhcCCcchhHH
Q 048793 461 ALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDALVAILNLAGDRETVGR 539 (683)
Q Consensus 461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~~ 539 (683)
.+..++.+..+..+...+..++..+..|..--..-..+ .+.+..+..-+ .......+..++.++..++. +.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-----aL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL---DEFLDSLLQSISSSEDSELRPQALEILIWITK-----AL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----HH
Confidence 56667777666656777888888888776431111111 23444444444 22333344444444444322 11
Q ss_pred HHh-----cCchHHHHHHhccC--chhHHHHHHHHHHcCC-------cHHHH----HHc--CchHHHHHHHhcCChHHHH
Q 048793 540 LVE-----RGIVEIVAEAMDVL--PEESVTILEAVVKRGG-------LTAIV----AAY--NTIKKLCILLREGSDTSRE 599 (683)
Q Consensus 540 iv~-----aG~V~~Lv~lL~~~--~~~~~~aL~~L~~l~~-------~~e~~----~~~--g~v~~Lv~lL~~~s~~~ke 599 (683)
+++ ...+..|+++|.+. ...+.+++.+|..-.. +...+ +.. -.+|.|+.-.+..+...|.
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHH
Confidence 111 12356678888753 2347777777765310 01111 111 2356666666666777899
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
+...+|..|..+-+...+..-+ ..++|+|++-+...+..++..+...|..+-.
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l--~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPEL--PTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999988865544333 4588999888888888899888887777655
No 257
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=73.40 E-value=13 Score=30.45 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc
Q 048793 435 QVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR 503 (683)
Q Consensus 435 qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G 503 (683)
...|++++.+++..+..-..+-+. +.++.++++..+......|--|..+|.-++...+.++.+.+ .|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~-~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~-~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDES-DIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE-LG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhc-CHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH-cC
Confidence 467899999999888777766665 89999999998766788999999999999998888777765 44
No 258
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=72.68 E-value=1.4e+02 Score=32.09 Aligned_cols=199 Identities=10% Similarity=0.072 Sum_probs=134.1
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-h-----hhHHhhh-cccHHHHHHhhcCCChhHHHHHHH
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-H-----RKTLGRK-TRVVKGLMDLVKGGPTSSKRDALV 525 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~-----~~~i~~~-~G~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
..+... |.+..|+..|..- +-++|..++.+..++-.... + ..-+... ..++..|+.--. +++..-.+-.
T Consensus 70 ~Ei~~~-dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ 145 (335)
T PF08569_consen 70 QEIYRS-DLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGD 145 (335)
T ss_dssp HHHHHH-THHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHH
T ss_pred HHHHHh-CHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHH
Confidence 355666 8999999999888 69999999988888875432 2 2233332 344444444333 4455566667
Q ss_pred HHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHH-cCCcHHHHHHc------CchHHHHHHHhcCChHH
Q 048793 526 AILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVK-RGGLTAIVAAY------NTIKKLCILLREGSDTS 597 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~-l~~~~e~~~~~------g~v~~Lv~lL~~~s~~~ 597 (683)
.|...+.++.-...+.....+..+.+.+... =+.+..|..++-. +..+...+.+. .......++|.+++--+
T Consensus 146 mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 146 MLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 7777777766667777888888888887643 4678888888854 55666555443 22456677788889999
Q ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 598 RESAAATLVTICRKGGS-EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 598 ke~A~~aL~~L~~~~~~-~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
|+.++..|..|-..-.+ ......+....-+..+..|+++.+..+|-.|=-+.+.+-.-
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999999999764333 23345555566788889999999999999998888887553
No 259
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=72.67 E-value=2.4 Score=32.45 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=32.2
Q ss_pred cccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793 278 RCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN 325 (683)
Q Consensus 278 ~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~ 325 (683)
.|=.+...=...++.+|||..++.|..-| ...-||.|+.++...+
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 35555666566788999999999763332 3457999999887553
No 260
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=72.58 E-value=2.7 Score=34.54 Aligned_cols=43 Identities=28% Similarity=0.554 Sum_probs=31.9
Q ss_pred cccccccCCC----Cceec-CCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 278 RCPISLELMR----NPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 278 ~CPis~~~m~----dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
+||-|.--|. =||.. .|+|.|--.||.+|++. ...||.++|+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 4666655441 13333 78999999999999997 67899999874
No 261
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=72.55 E-value=17 Score=33.89 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=58.1
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHhh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES-GTARARRKAAALLRILRRW 655 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL~~l~~~ 655 (683)
++.+|.+.|..+++.++-.|..+|-.+..++|..... .+...+++..|..++.. ..+++|+|+..++......
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~-evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHD-EVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHH-HHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999888888887765444 45577899999998874 4779999988888777653
No 262
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=72.51 E-value=16 Score=36.61 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhcccCch-h-HHHHhcccCcHHH
Q 048793 388 AANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSILEA-N-KTRIMETEGALNG 464 (683)
Q Consensus 388 ~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~~~~-~-k~~I~~~~G~I~~ 464 (683)
-...|+..|.-++.+ ++.|..+.++..--.|-.+|..... +....++-.++.++..|..+++ . -..+... ..+|.
T Consensus 116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT-eivPL 193 (315)
T COG5209 116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT-EIVPL 193 (315)
T ss_pred HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh-hHHHH
Confidence 346777777777775 4688888887654445556643311 1134577788889988887643 2 3344454 89999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhh-------cccHHHHHH-hhcCCChhHHHHHHHHHHHhcCCcch
Q 048793 465 VIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRK-------TRVVKGLMD-LVKGGPTSSKRDALVAILNLAGDRET 536 (683)
Q Consensus 465 Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~-------~G~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n 536 (683)
..+++..| +.-.+.-|+.++..+-.+|..-.-|..+ ...+..++. +...+..+..+.++++-..||..+..
T Consensus 194 cLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~a 272 (315)
T COG5209 194 CLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHA 272 (315)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhH
Confidence 99999999 6777777777777666665443333221 223333332 23446678889999999999988776
Q ss_pred hHHH
Q 048793 537 VGRL 540 (683)
Q Consensus 537 ~~~i 540 (683)
|..+
T Consensus 273 R~lL 276 (315)
T COG5209 273 RALL 276 (315)
T ss_pred HHHH
Confidence 6544
No 263
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.46 E-value=96 Score=35.95 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=50.8
Q ss_pred hcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhcccchHHHHHhhH------HHHHHHHH
Q 048793 53 RSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIE------TAANNFHE 126 (683)
Q Consensus 53 ~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~sklyl~~~~~------~~~~~~~~ 126 (683)
++..+..+++..+.--++||...+.. +.-..-|+.-+..|..+..+.+.+..... ++..+ .+...+..
T Consensus 182 ~~~~~~~~eld~L~~ql~ELe~~~l~---~~E~e~L~~e~~~L~n~e~i~~~~~~~~~---~L~~~~~~~~~~~~~~l~~ 255 (563)
T TIGR00634 182 QKEQELAQRLDFLQFQLEELEEADLQ---PGEDEALEAEQQRLSNLEKLRELSQNALA---ALRGDVDVQEGSLLEGLGE 255 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcC---CCcHHHHHHHHHHHhCHHHHHHHHHHHHH---HHhCCccccccCHHHHHHH
Confidence 55678889999999999999987753 23366777778888888888777775522 22222 34555555
Q ss_pred HHHHHHHH
Q 048793 127 LTIDLSTL 134 (683)
Q Consensus 127 ~~~~l~~~ 134 (683)
+.+.+...
T Consensus 256 ~~~~l~~~ 263 (563)
T TIGR00634 256 AQLALASV 263 (563)
T ss_pred HHHHHHHh
Confidence 55555444
No 264
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.12 E-value=17 Score=34.85 Aligned_cols=93 Identities=9% Similarity=0.091 Sum_probs=61.0
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCCh-hHHHHHHHHHHHhcCCcchhHH
Q 048793 461 ALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPT-SSKRDALVAILNLAGDRETVGR 539 (683)
Q Consensus 461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~n~~~ 539 (683)
.+..+..+|++. +.+.|-.++..+.-++........+....-.+..|+.+|+..++ ..++.|+.+|..|...-.+...
T Consensus 26 l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 566677888877 68889888888887776644333333324578889999987654 4778888888887654433333
Q ss_pred HHhc-------CchHHHHHHhc
Q 048793 540 LVER-------GIVEIVAEAMD 554 (683)
Q Consensus 540 iv~a-------G~V~~Lv~lL~ 554 (683)
+.+. +.++.+++++.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~ 126 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQ 126 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHh
Confidence 3322 44555566655
No 265
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.44 E-value=2.1 Score=48.35 Aligned_cols=38 Identities=29% Similarity=0.571 Sum_probs=30.6
Q ss_pred CcccccccccCC----CCceecCCccccchhhHHHHHhcCCCCCC
Q 048793 275 ADFRCPISLELM----RNPVVVATGQTYDRQSISLWIESGHNTCP 315 (683)
Q Consensus 275 ~~f~CPis~~~m----~dPv~~~~g~ty~r~~I~~w~~~g~~~cP 315 (683)
+-++|+||...+ ..||..-||||.||.|.+.-.+. +||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 346899995444 57999999999999999988654 777
No 266
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.98 E-value=22 Score=32.66 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=56.2
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc---CCHHHHHHHHHHHHHHHhh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES---GTARARRKAAALLRILRRW 655 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~---~~~~~k~kA~~lL~~l~~~ 655 (683)
++.+|-+.|+.+++.++-.|..+|-.+..+++.....+ +....++.-|+.++.. ..+.+|+|+..++......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~-i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQ-VADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHH-HhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778888989999999999999988888887654443 4445666668888775 3779999988888777663
No 267
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=70.93 E-value=88 Score=33.68 Aligned_cols=190 Identities=13% Similarity=0.115 Sum_probs=126.3
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHH-----HHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRA-----CIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~-----~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL 445 (683)
+.+..|+..|..- +-+.+..+.....++......++. .+... -|-++..|-.+.+ ++++--.+-..|..+
T Consensus 76 dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~--~~dial~~g~mlRec 150 (335)
T PF08569_consen 76 DLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYE--NPDIALNCGDMLREC 150 (335)
T ss_dssp THHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhc--CccccchHHHHHHHH
Confidence 4566778888777 889999998888888877665543 23222 1333333322211 456666777888888
Q ss_pred ccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhH-Hh-hhcccHHHHHHhhcCCChhHHHH
Q 048793 446 SILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKT-LG-RKTRVVKGLMDLVKGGPTSSKRD 522 (683)
Q Consensus 446 s~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~-i~-~~~G~i~~Lv~lL~~~~~~~~~~ 522 (683)
..++.-.+.|... ..+..+.+....+ +-++...|..++..|-.. ...... +. .-...+.....||.+++--.+..
T Consensus 151 ~k~e~l~~~iL~~-~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 151 IKHESLAKIILYS-ECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp TTSHHHHHHHHTS-GGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HhhHHHHHHHhCc-HHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 9998877777776 7888899998887 689999999999986543 332222 21 22346677788899988889999
Q ss_pred HHHHHHHhcCCcchhHHHHh----cCchHHHHHHhccC-chhHHHHHHHH
Q 048793 523 ALVAILNLAGDRETVGRLVE----RGIVEIVAEAMDVL-PEESVTILEAV 567 (683)
Q Consensus 523 A~~aL~nLs~~~~n~~~iv~----aG~V~~Lv~lL~~~-~~~~~~aL~~L 567 (683)
++..|..|-.+..|-..|.+ ..-+..++.+|.+. ....-+|..++
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 99999999999888776643 23466677777753 33455555555
No 268
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=70.66 E-value=3.1 Score=36.52 Aligned_cols=51 Identities=24% Similarity=0.487 Sum_probs=31.6
Q ss_pred CCcccccccccCCCCceecCCc------cccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793 274 PADFRCPISLELMRNPVVVATG------QTYDRQSISLWIESGHNTCPKTGQTLAHTN 325 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~~~g------~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~ 325 (683)
.+.++||||+++-..-|.+.+. .-|+..++.+-..+|. .=|.+|+|++..-
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~sM 94 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPSM 94 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTT
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChhh
Confidence 4568999999999999988443 3499999999988753 4588888876554
No 269
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=70.22 E-value=1.6e+02 Score=31.57 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=112.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhc-cCchhHHHHHHh-C-cHHHHHHhhCCCCCC--C-----C--hhhHHHHHH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSK-TDSDSRACIAEA-G-AIALLARHLGPDTAS--R-----L--PNLQVNAVT 440 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~-~~~~nr~~i~~~-G-~Ip~Lv~lL~s~~~~--~-----d--~~~qe~A~~ 440 (683)
...+.+.|.+. .......+++-|..++. ++......+... + -.+.|.+++...... . + +.++.+.+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 56677888887 77778888888888888 554455555543 3 445677777433100 0 0 278888888
Q ss_pred HHHhccc--CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHH-hhcCc----chhhHHhhhcccHHHHHHhhc
Q 048793 441 TILNLSI--LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFS-LSGVH----AHRKTLGRKTRVVKGLMDLVK 513 (683)
Q Consensus 441 aL~nLs~--~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~-Ls~~~----~~~~~i~~~~G~i~~Lv~lL~ 513 (683)
.+..+.. +...+..+....+.+..+.+-|... +.+.......+|.. +...+ ..|..+.. ..++..|+.+..
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYS 214 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhc
Confidence 7777654 4556778887668888899888876 68888888888884 43332 45666666 678999999877
Q ss_pred CCCh----hHHHHHHHHHHHhcCCcc
Q 048793 514 GGPT----SSKRDALVAILNLAGDRE 535 (683)
Q Consensus 514 ~~~~----~~~~~A~~aL~nLs~~~~ 535 (683)
..++ .+.+.+-..|..+|.++.
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 6655 677888899999997665
No 270
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.91 E-value=34 Score=42.00 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=93.4
Q ss_pred HHHHHHHhccC---CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhcccC
Q 048793 373 ASFLINKLATS---QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 373 i~~Lv~~L~s~---~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
.|.+++..+.. ++|+.|..|.-+|..+.--+. +-| .-..|.|...+. ++ ++.++.+++.+++.|+.-
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa--~fc---es~l~llftimeksp----~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISA--EFC---ESHLPLLFTIMEKSP----SPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH--HHH---HHHHHHHHHHHhcCC----Cceeeecchheccchhhh
Confidence 45566665332 389999998888877654332 212 235789999998 55 899999999999998753
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
-.| +++ -.-+.|..-|... ++.+|+.|.-+|.+|-..+-.| .-|-+.-+..+|.+++.+++.-|-
T Consensus 992 fpn---lie--~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 992 FPN---LIE--PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ccc---ccc--hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHH
Confidence 222 122 1334566677766 7999999999999998765333 258889999999998887776665
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=69.75 E-value=23 Score=32.49 Aligned_cols=76 Identities=18% Similarity=0.086 Sum_probs=60.8
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
+.++..|-+.|+++ ++.++..|+..|-.+.+.... -+..+.....+..|+.++... ...+..++..++..+.+++.
T Consensus 36 k~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 45667788999999 999999999999999988754 566677767777799999752 11278999999999988864
No 272
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.71 E-value=1.8 Score=50.93 Aligned_cols=49 Identities=14% Similarity=0.484 Sum_probs=35.0
Q ss_pred CCCcccccccccCCC--C---ce--ecCCccccchhhHHHHHhc-CCCCCCCCCCcc
Q 048793 273 VPADFRCPISLELMR--N---PV--VVATGQTYDRQSISLWIES-GHNTCPKTGQTL 321 (683)
Q Consensus 273 ~p~~f~CPis~~~m~--d---Pv--~~~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l 321 (683)
..+.=-|+||--++. | |- --.|.|.|--+|+-+|+.. |+.+||.||..+
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 344457999987764 3 21 1245678888999999985 567999999654
No 273
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=69.70 E-value=28 Score=39.88 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=56.7
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
.++..++.+.... +..+|..|++.|-.+|++++++-..+ +..|+.+|.++ ++.....+-.+|..|-..+.
T Consensus 59 ~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~td----d~~E~~~v~~sL~~ll~~d~ 128 (556)
T PF05918_consen 59 EAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTD----DPVELDAVKNSLMSLLKQDP 128 (556)
T ss_dssp HHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT-------HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcc----cHHHHHHHHHHHHHHHhcCc
Confidence 4677788999888 99999999999999999876555444 45799999988 76555555555544432111
Q ss_pred hHHHHhcccCcHHHHHHHHh---cCCCHHHHHHHHHHHH
Q 048793 451 NKTRIMETEGALNGVIEVLR---SGATWEAKGNAAATIF 486 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~---~~~~~~~~~~Aa~~L~ 486 (683)
.|.+..|...+. ++ +..+|+.+...|.
T Consensus 129 --------k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~ 158 (556)
T PF05918_consen 129 --------KGTLTGLFSQIESSKSG-DEQVRERALKFLR 158 (556)
T ss_dssp --------HHHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence 133444444443 45 4667777776663
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.56 E-value=22 Score=33.33 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=62.1
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
+.++..|.+.|.+. ++.++..|+..|-.+.+.... -+..|+..+.+..|+.++... .+..++..++..+..++.
T Consensus 36 k~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHH
Confidence 45667788999998 999999999999999987753 456777889999999999883 188999999999998874
No 275
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.06 E-value=24 Score=32.53 Aligned_cols=75 Identities=19% Similarity=0.137 Sum_probs=60.3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccC-chhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTD-SDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~-~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
+.++..|.+.|.++ ++.++..|+..|-.+.+.. ..-...+...+.+..|+.++..... .+.++..++..+.+++.
T Consensus 36 k~a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHH
Confidence 45667788999998 9999999999999999885 3456777788999999999987621 23489999988888764
No 276
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=69.05 E-value=1.8e+02 Score=34.90 Aligned_cols=260 Identities=14% Similarity=0.081 Sum_probs=131.6
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccC-chhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTD-SDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR 454 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~-~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~ 454 (683)
....++.. ..+.+..++.....++... ...+..+.....+|.+-.+..+. +..++...+..+.+++---. +..
T Consensus 360 ~~~l~~~~-~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~----~~~vr~a~a~~~~~~~p~~~-k~~ 433 (759)
T KOG0211|consen 360 VSNLLKDE-EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN----ALHVRSALASVITGLSPILP-KER 433 (759)
T ss_pred HHHHhcch-hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc----cchHHHHHhccccccCccCC-cCc
Confidence 34444443 3444455555555544322 22455566666788888888777 77777666655555542111 222
Q ss_pred HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793 455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD 533 (683)
Q Consensus 455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
-+. -.+|.+...++.. +++++.+..+.+..+-.. +........ ...+|.++.+-.+...+++....+.+..++..
T Consensus 434 ti~--~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~~wRvr~ail~~ip~la~q 509 (759)
T KOG0211|consen 434 TIS--ELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDLLWRVRLAILEYIPQLALQ 509 (759)
T ss_pred Ccc--ccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence 222 2456666666655 577887777766544333 223333444 56788888887766667777778887777765
Q ss_pred cchhHHHHhcCchHHHHHHhccC-chhHHHHHHHH---HHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793 534 RETVGRLVERGIVEIVAEAMDVL-PEESVTILEAV---VKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC 609 (683)
Q Consensus 534 ~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L---~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~ 609 (683)
.. ..+.+.-..+.+..-+.+. -+....|...+ +..-|..-.+.. .++.+......++-..|...+..+..++
T Consensus 510 ~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~--~i~k~L~~~~q~~y~~R~t~l~si~~la 585 (759)
T KOG0211|consen 510 LG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLE--EIPKLLAMDLQDNYLVRMTTLFSIHELA 585 (759)
T ss_pred hh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHH--hhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence 43 2222111111111112111 12233333333 222221111111 1333333333333333433333333343
Q ss_pred hcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 610 RKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 610 ~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.-.+.+...+ -+++.+..+..+..+.+|-+|+..|..+-+
T Consensus 586 ~v~g~ei~~~-----~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 586 EVLGQEITCE-----DLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred HHhccHHHHH-----HHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 3223333332 347777788888888888887777776655
No 277
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=68.85 E-value=23 Score=32.93 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=56.6
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES------GTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~------~~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|.++++..+-.|..+|-.+..+.|..... .+...+++.-|+.++.. ....+|+|...+++.-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~-evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHS-EVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHH-HHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999988888765444 45567888889988863 367999997777766554
No 278
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.68 E-value=2.2e+02 Score=33.62 Aligned_cols=116 Identities=20% Similarity=0.176 Sum_probs=74.7
Q ss_pred hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
.|.+-.|++...+. +..++...+.+|..++........-+-. +.++.+..-|... -+.+|..|..+|..+-..+
T Consensus 84 ~~~f~hlLRg~Esk----dk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 84 AGTFYHLLRGTESK----DKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred HHHHHHHHhcccCc----chhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCC
Confidence 35666666667777 8999999999888776532222222222 4555555555544 4789999999999887432
Q ss_pred chhhHHhhhcccHHHHHHhhcCC-ChhHHHHHHHHHHHhcCCcchhHHHHh
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGG-PTSSKRDALVAILNLAGDRETVGRLVE 542 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~iv~ 542 (683)
.+- ...++..++.+++++ +++++.. +|.|++.++.....+++
T Consensus 158 ~de-----e~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 158 KDE-----ECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLPCIVE 200 (892)
T ss_pred CCC-----cccHHHHHHHHHhcCCcHHHHHH---HHHhhccCcccchhHHH
Confidence 211 123566788888765 4566665 46777777776666654
No 279
>PRK14707 hypothetical protein; Provisional
Probab=68.34 E-value=4.1e+02 Score=35.59 Aligned_cols=252 Identities=15% Similarity=0.073 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNG 464 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~ 464 (683)
+.+.+..+......++.++ .-|..+ ..-+|-.+++-++.= ++.....+|+..|...-.+++....-++. ..+.-
T Consensus 178 ~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~sKW---p~~~~c~~aa~~la~~l~~~~~l~~~~~~-q~va~ 251 (2710)
T PRK14707 178 NPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNALCKW---PDTPDCGNAVSALAERLADESRLRNELKP-QELGN 251 (2710)
T ss_pred CchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHcCcHHHHHhCCh-HHHHH
Confidence 4444444444444555444 344444 334455555555432 14444455666665543333443334444 34555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH-HhcCCcchhHHHHh
Q 048793 465 VIEVLRSGATWEAKGNAAATIF-SLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL-NLAGDRETVGRLVE 542 (683)
Q Consensus 465 Lv~lL~~~~~~~~~~~Aa~~L~-~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~-nLs~~~~n~~~iv~ 542 (683)
.+.-|.+=.+..+..+|+..|. .|+....-+..+.. .+.-..|-.+-+-.+.++...|+.+|. .|..+.+-+ .-.+
T Consensus 252 ~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~-~~~~ 329 (2710)
T PRK14707 252 ALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAERLADDPELC-KALN 329 (2710)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhh-hccc
Confidence 5666654324455556666554 56555445555443 343333434444455565555555554 455544333 3344
Q ss_pred cCchHHHHHHhcc--CchhHHHHHHHHH-HcCCcHHHHHHcC--chHHHHHHHhc--CChHHHHHHHHHHHHHHhcCCch
Q 048793 543 RGIVEIVAEAMDV--LPEESVTILEAVV-KRGGLTAIVAAYN--TIKKLCILLRE--GSDTSRESAAATLVTICRKGGSE 615 (683)
Q Consensus 543 aG~V~~Lv~lL~~--~~~~~~~aL~~L~-~l~~~~e~~~~~g--~v~~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~~~~ 615 (683)
+-.+..+++-|+. +...+..|...|+ .++..++.+...+ ++..+++-+.. .++..+..|...-..|.. +.
T Consensus 330 ~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~---d~ 406 (2710)
T PRK14707 330 ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVD---DL 406 (2710)
T ss_pred hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc---Ch
Confidence 4455666666663 3334555555554 4666666666553 34444454443 333333333332223332 22
Q ss_pred HHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHH
Q 048793 616 MVADIAAVPGIERVIWELMESGTARARRKAAA 647 (683)
Q Consensus 616 ~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~ 647 (683)
..+..+...|+-..|-.|.+=....+-+.|+.
T Consensus 407 ~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~ 438 (2710)
T PRK14707 407 ELRKGLDPQGVSNALNALAKWPDLPICGQAVS 438 (2710)
T ss_pred hhhhhcchhhHHHHHHHhhcCCcchhHHHHHH
Confidence 34555666677776666666655555544444
No 280
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.95 E-value=33 Score=32.84 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=71.0
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcc-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMET-EGALNGVIEVLRSGATWEAKGNAAATIFSLSGV- 491 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~-~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~- 491 (683)
..+..+..+|.+. ++..+..++..+..++...+ ...+... .--+..++.+|+......+++.++.+|..+...
T Consensus 25 ~l~~ri~~LL~s~----~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 25 KLVTRINSLLQSK----SAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHhCCC----ChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3455678889988 88888888877766654322 2223222 135888999998876688888999888877643
Q ss_pred ---cchhhHHh--hhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 492 ---HAHRKTLG--RKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 492 ---~~~~~~i~--~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
++....+. .-.+.+++++.++.+ ......++.+|..|-.
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 23222222 113566677777664 3455667777776644
No 281
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=67.89 E-value=92 Score=31.59 Aligned_cols=138 Identities=19% Similarity=0.137 Sum_probs=84.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT 453 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~ 453 (683)
+.|+..+....+++.+...+..|..++.++..+... ++..|..+...+ ....+--+...+..+...++---
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~----~~~~~~~~~rLl~~lw~~~~r~f 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQG----SLELRYVALRLLTLLWKANDRHF 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCC----chhHHHHHHHHHHHHHHhCchHH
Confidence 344454544448899999999999999877212222 344456666665 55554455666666654322111
Q ss_pred HHhcccCcHHHHHHH--Hh------cC-CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh-cCCChhHHHHH
Q 048793 454 RIMETEGALNGVIEV--LR------SG-ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDA 523 (683)
Q Consensus 454 ~I~~~~G~I~~Lv~l--L~------~~-~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A 523 (683)
+.+..++.. ++ ++ ...+.....+..+..++....+ -| ...++.+..+| .+.++..+..|
T Consensus 74 ------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~g--~~ll~~ls~~L~~~~~~~~~ala 142 (234)
T PF12530_consen 74 ------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD---HG--VDLLPLLSGCLNQSCDEVAQALA 142 (234)
T ss_pred ------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh---hH--HHHHHHHHHHHhccccHHHHHHH
Confidence 233333333 11 11 1244445556788888887776 22 45788888999 66677788999
Q ss_pred HHHHHHhc
Q 048793 524 LVAILNLA 531 (683)
Q Consensus 524 ~~aL~nLs 531 (683)
+.+|..||
T Consensus 143 le~l~~Lc 150 (234)
T PF12530_consen 143 LEALAPLC 150 (234)
T ss_pred HHHHHHHH
Confidence 99999999
No 282
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.99 E-value=2.7e+02 Score=35.74 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=137.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
||.|.+.=-.+ +..+|. |..-|++.--.++ +..+-+ ..+..-|+.-|.+. ...++|.++-||..|-.+.+
T Consensus 1000 IPrLyRY~yDP-~~~Vq~-aM~sIW~~Li~D~--k~~vd~y~neIl~eLL~~lt~k----ewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1000 IPRLYRYQYDP-DKKVQD-AMTSIWNALITDS--KKVVDEYLNEILDELLVNLTSK----EWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hHHHhhhccCC-cHHHHH-HHHHHHHHhccCh--HHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHHcCCC
Confidence 34444432333 555554 4455555444332 222211 34556666666666 78899999999999976644
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHH---HHHHHHHHHhhcC--c-----chhhHHhhhcccHHHHHH--hhcCCChh
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAK---GNAAATIFSLSGV--H-----AHRKTLGRKTRVVKGLMD--LVKGGPTS 518 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~---~~Aa~~L~~Ls~~--~-----~~~~~i~~~~G~i~~Lv~--lL~~~~~~ 518 (683)
+-..+-.-+.....+.++...= ...+| ..++.+|..|+.- + ..++.+ +-++|.|.+ ++ +.-++
T Consensus 1072 ~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l---~~iLPfLl~~gim-s~v~e 1146 (1702)
T KOG0915|consen 1072 FDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEAL---DIILPFLLDEGIM-SKVNE 1146 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH---HHHHHHHhccCcc-cchHH
Confidence 4222211112233333343321 12334 4455666666531 1 122222 345666663 34 44577
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchh------------HHHHHHHHHH-cCCcH---HHHHH---
Q 048793 519 SKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEE------------SVTILEAVVK-RGGLT---AIVAA--- 579 (683)
Q Consensus 519 ~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~------------~~~aL~~L~~-l~~~~---e~~~~--- 579 (683)
+++-++.++..|+.+....-+---+..||.|++..++-... ..+++-.+.. .+.+. +.+..
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 89999999999988765422222345677777776642221 2233333322 11111 11111
Q ss_pred -------cCchHHHHHHHhcC-ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793 580 -------YNTIKKLCILLREG-SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI 651 (683)
Q Consensus 580 -------~g~v~~Lv~lL~~~-s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~ 651 (683)
..-+|.+.++++.+ .-.+|--++..+..|...-+.+. ... .+..+..|.....+-++.+++.-+...-.
T Consensus 1227 ~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em-tP~--sgKll~al~~g~~dRNesv~kafAsAmG~ 1303 (1702)
T KOG0915|consen 1227 YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM-TPY--SGKLLRALFPGAKDRNESVRKAFASAMGY 1303 (1702)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc-Ccc--hhHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 01255666666643 33455556665555554333221 111 12345666666777788888777777777
Q ss_pred HHhhhcc
Q 048793 652 LRRWAAG 658 (683)
Q Consensus 652 l~~~~~~ 658 (683)
|.++...
T Consensus 1304 L~k~Ss~ 1310 (1702)
T KOG0915|consen 1304 LAKFSSP 1310 (1702)
T ss_pred HHhcCCh
Confidence 7765544
No 283
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=66.98 E-value=2.9e+02 Score=33.42 Aligned_cols=240 Identities=15% Similarity=0.104 Sum_probs=130.5
Q ss_pred HHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHh----cCC---CHHHHHH
Q 048793 409 CIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLR----SGA---TWEAKGN 480 (683)
Q Consensus 409 ~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~----~~~---~~~~~~~ 480 (683)
.+.+.|++..|+.+|.+-.+ ..+.......+..|..++.-..||+.+.+. |+++.|++.|. .+. .++.-+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHH
Confidence 34567999999999876421 113455566677777777889999999997 99999999986 221 1455555
Q ss_pred HHHHHHHhhcCcc---hhhHHh--h-------hcccHHHHHHhhcCC----ChhHHHHHHHHHHHhcCCcchhHHH-Hhc
Q 048793 481 AAATIFSLSGVHA---HRKTLG--R-------KTRVVKGLMDLVKGG----PTSSKRDALVAILNLAGDRETVGRL-VER 543 (683)
Q Consensus 481 Aa~~L~~Ls~~~~---~~~~i~--~-------~~G~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~i-v~a 543 (683)
...++..|..... ...... . ...-+..|++.+.+. ++......+++|-+|+.....+..+ ++.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 5555555543211 111000 0 122366677766654 4667788889999998876654333 221
Q ss_pred CchHHHHHH--hccC--c--hhHHHHHHHHHH-cCCcH------HHHHHcCchHHHHHHHhc--------CChHHH----
Q 048793 544 GIVEIVAEA--MDVL--P--EESVTILEAVVK-RGGLT------AIVAAYNTIKKLCILLRE--------GSDTSR---- 598 (683)
Q Consensus 544 G~V~~Lv~l--L~~~--~--~~~~~aL~~L~~-l~~~~------e~~~~~g~v~~Lv~lL~~--------~s~~~k---- 598 (683)
..+.+++ +... + ....++.+.++. +..+. +.+...|.+...+..|.. .|+.-+
T Consensus 271 --F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 --FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred --HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 1111111 0000 1 123334443332 21111 223333556655555542 233322
Q ss_pred ----HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 048793 599 ----ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAALLRILRR 654 (683)
Q Consensus 599 ----e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL~~l~~ 654 (683)
..+..+|.-||.+... .+. +...++++.|..|-+.. +.++=..|-.+|..++.
T Consensus 349 ~psLp~iL~lL~GLa~gh~~--tQ~-~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEP--TQL-LIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHH--HHH-HHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 3567777788874322 222 34466778888775543 44444555556655555
No 284
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=66.75 E-value=2.4e+02 Score=32.39 Aligned_cols=153 Identities=11% Similarity=0.002 Sum_probs=96.8
Q ss_pred HHhhhhHHHHHHHhccC-C-----CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHH
Q 048793 367 EATKMTASFLINKLATS-Q-----SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVT 440 (683)
Q Consensus 367 ~~~~~~i~~Lv~~L~s~-~-----~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~ 440 (683)
.+.++.+|.|+++|... . +...-..|..+|..++... ...|.+. ++..+-.-+.++ +..-++.|+.
T Consensus 317 aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~FvEqni~~~----~w~nreaavm 388 (858)
T COG5215 317 AAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGFVEQNIRSE----SWANREAAVM 388 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHHHHHhccCc----hhhhHHHHHH
Confidence 34567889999999762 1 3344567777887776532 2233332 222222334555 8888899999
Q ss_pred HHHhcccCc--hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc---CC
Q 048793 441 TILNLSILE--ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK---GG 515 (683)
Q Consensus 441 aL~nLs~~~--~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~---~~ 515 (683)
++...-.++ +-...++. .++|.|....... ..-++..++|++..++.+- ...|.. .|-+++.|.-+. .+
T Consensus 389 AfGSvm~gp~~~~lT~~V~--qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~v--a~~i~p-~~Hl~~~vsa~liGl~D 462 (858)
T COG5215 389 AFGSVMHGPCEDCLTKIVP--QALPGIENEMSDS-CLWVKSTTAWCFGAIADHV--AMIISP-CGHLVLEVSASLIGLMD 462 (858)
T ss_pred HhhhhhcCccHHHHHhhHH--hhhHHHHHhcccc-eeehhhHHHHHHHHHHHHH--HHhcCc-cccccHHHHHHHhhhhc
Confidence 999887553 34556665 5889888888755 6889999999999887642 111111 333333333221 13
Q ss_pred ChhHHHHHHHHHHHhcCC
Q 048793 516 PTSSKRDALVAILNLAGD 533 (683)
Q Consensus 516 ~~~~~~~A~~aL~nLs~~ 533 (683)
.+....++.|+..||..+
T Consensus 463 ~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 463 CPFRSINCSWRKENLVDH 480 (858)
T ss_pred cchHHhhhHHHHHhHHHh
Confidence 567778899999999765
No 285
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.80 E-value=3.3 Score=33.80 Aligned_cols=49 Identities=24% Similarity=0.423 Sum_probs=32.3
Q ss_pred CCcccccccccCCCC-ceec-CCccccchhhHHHHHhc--CCCCCCCCCCccC
Q 048793 274 PADFRCPISLELMRN-PVVV-ATGQTYDRQSISLWIES--GHNTCPKTGQTLA 322 (683)
Q Consensus 274 p~~f~CPis~~~m~d-Pv~~-~~g~ty~r~~I~~w~~~--g~~~cP~~~~~l~ 322 (683)
|-+-.||-|.-.=.| |.+. -|.|.|-+.||.+|+.. +...||.|||...
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 334445555433222 3333 78899999999999974 3468999998653
No 286
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=65.67 E-value=27 Score=32.46 Aligned_cols=76 Identities=11% Similarity=0.168 Sum_probs=60.1
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCC--CCCChhhHHHHHHHHHhcc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDT--ASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~--~~~d~~~qe~A~~aL~nLs 446 (683)
+.++..+.+.|.++ ++.++..|+..|-.+.+... .-+..|+..+.+.-|++++.... ...+..++...+..+..++
T Consensus 37 k~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 44566788999999 99999999999999988653 35677788899999999996411 0127889999999988876
No 287
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=65.52 E-value=2.3e+02 Score=31.71 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=81.8
Q ss_pred ccHHHHHHhhcC-CChhHHHHHHHHHHHhcCCcchhHHHHh--cCchHHHHHHhccC-chh----HHHHHHHHHHcCCcH
Q 048793 503 RVVKGLMDLVKG-GPTSSKRDALVAILNLAGDRETVGRLVE--RGIVEIVAEAMDVL-PEE----SVTILEAVVKRGGLT 574 (683)
Q Consensus 503 G~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~--aG~V~~Lv~lL~~~-~~~----~~~aL~~L~~l~~~~ 574 (683)
.++..+++.|.+ .++..++-|++.|..+|.++..+ +.+ .-+|..+++.-.+. ++. .+.|+.+|+.+-.-
T Consensus 329 ~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~- 405 (516)
T KOG2956|consen 329 EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL- 405 (516)
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-
Confidence 356678888887 56778899999999999876433 222 12344444444332 222 33445555443221
Q ss_pred HHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 048793 575 AIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLR 650 (683)
Q Consensus 575 e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~ 650 (683)
..+..+..++.+.+...--.++..+..|+..-..+....++ ..+.|.++.--.+.+..+|+.|..-|=
T Consensus 406 ------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 406 ------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred ------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 13455556666544444445566677777654433333333 577888888888888888888876443
No 288
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.40 E-value=1e+02 Score=36.34 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=66.1
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHH
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMD 510 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~ 510 (683)
+.+++..|+.+|.-++..+ +...+..|.+|....++-+|--|+-+|.--|....++..|. .+++|+
T Consensus 568 nDDVrRaAVialGFVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~----lLepl~- 633 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN----LLEPLT- 633 (929)
T ss_pred chHHHHHHHHHheeeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH----HHhhhh-
Confidence 6677777777776554322 23466788888877688999988988887777766666552 244443
Q ss_pred hhcCCChhHHHHHHHHHHHhcC-Ccc-hhHHHHhcCchHHHHHHhccC
Q 048793 511 LVKGGPTSSKRDALVAILNLAG-DRE-TVGRLVERGIVEIVAEAMDVL 556 (683)
Q Consensus 511 lL~~~~~~~~~~A~~aL~nLs~-~~~-n~~~iv~aG~V~~Lv~lL~~~ 556 (683)
.+...=++.-|+-++.-+-. +.+ -+.++ .|....+.+++.+.
T Consensus 634 --~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 634 --SDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDK 677 (929)
T ss_pred --cChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhh
Confidence 34444477777777766533 222 22221 23445566666643
No 289
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=62.52 E-value=19 Score=39.86 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=87.3
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhcc---CchhHHHHHHhCcHH-HHHHhhCCC--CCCCChhhHHHHHHHHHhccc
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKT---DSDSRACIAEAGAIA-LLARHLGPD--TASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~---~~~nr~~i~~~G~Ip-~Lv~lL~s~--~~~~d~~~qe~A~~aL~nLs~ 447 (683)
..+...|.+. .-..|.+++|.+.+++.- +.-+-+...+. ++. .|..++... .+.++..++.+|+.+|.|+..
T Consensus 436 ~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR-~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 436 NAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQER-FSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 3344555554 567889999999887632 11121111111 111 122333221 122356799999999999974
Q ss_pred Cch-----hHHHHhcccCcHHHHH-HHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhh-hcccHHHHHHhhcC-CChhH
Q 048793 448 LEA-----NKTRIMETEGALNGVI-EVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGR-KTRVVKGLMDLVKG-GPTSS 519 (683)
Q Consensus 448 ~~~-----~k~~I~~~~G~I~~Lv-~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~-~~G~i~~Lv~lL~~-~~~~~ 519 (683)
.-+ .-..+++ |.+..+. .++-.+ ...++-|||-++.||..++..+-+-.. ...+.+.|..++.+ .+..+
T Consensus 514 vlq~i~~~~~~e~~~--~~~~~l~~~v~~~~-~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIE--ESIQALISTVLTEA-AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHHhhhccHHHHHH--HHHHhcccceeccc-ccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 311 1223333 2333333 333345 588999999999999988754322111 03467778888765 46678
Q ss_pred HHHHHHHHHHhcC
Q 048793 520 KRDALVAILNLAG 532 (683)
Q Consensus 520 ~~~A~~aL~nLs~ 532 (683)
+..|+.+|..-..
T Consensus 591 Ri~AA~aL~vp~~ 603 (728)
T KOG4535|consen 591 RIRAAAALSVPGK 603 (728)
T ss_pred eehhhhhhcCCCC
Confidence 8888888866544
No 290
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=62.12 E-value=3.5e+02 Score=32.58 Aligned_cols=251 Identities=11% Similarity=0.054 Sum_probs=137.7
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhH
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANK 452 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k 452 (683)
+.+-.+..+. +..++...+..+..++--.+..+ .-.-..|.++..++.. ++.++.+....+.++-.. +..-
T Consensus 401 p~~~~lv~d~-~~~vr~a~a~~~~~~~p~~~k~~---ti~~llp~~~~~l~de----~~~V~lnli~~ls~~~~v~~v~g 472 (759)
T KOG0211|consen 401 PEVQVLVLDN-ALHVRSALASVITGLSPILPKER---TISELLPLLIGNLKDE----DPIVRLNLIDKLSLLEEVNDVIG 472 (759)
T ss_pred HHHHHHHhcc-cchHHHHHhccccccCccCCcCc---CccccChhhhhhcchh----hHHHHHhhHHHHHHHHhccCccc
Confidence 3343444444 66666555555544432222000 0023566666677777 888888887666444222 2112
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
..++.. .-++.++.+-... ....+......+.-++.... ...+.. -.-+.+...+.+....+++.|+..+..++.
T Consensus 473 ~~~~s~-slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~-~~~~~~--~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 473 ISTVSN-SLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG-VEFFDE--KLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred chhhhh-hhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh-hHHhhH--HHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 223333 4677777766544 46777777777766665433 222211 122222223333344677777777777665
Q ss_pred CcchhHHHHhcCchHHHHHHhccC----chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHH
Q 048793 533 DRETVGRLVERGIVEIVAEAMDVL----PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTI 608 (683)
Q Consensus 533 ~~~n~~~iv~aG~V~~Lv~lL~~~----~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L 608 (683)
.-+ ..-...-.++.++.....+ .-....++..|+...|.+-.... -++.+..+.....+.+|-+++..|..+
T Consensus 548 ~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~--Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 548 TFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCED--LLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred HhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHH--HhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 433 1112223344444444322 12266677777776666544443 357777777788889999999998888
Q ss_pred HhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHH
Q 048793 609 CRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAA 646 (683)
Q Consensus 609 ~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~ 646 (683)
-..-... ..+.-+.|.+..|.++.+.++|-.|.
T Consensus 624 ~~~L~~~-----~~~~~v~pll~~L~~d~~~dvr~~a~ 656 (759)
T KOG0211|consen 624 LKLLDES-----VRDEEVLPLLETLSSDQELDVRYRAI 656 (759)
T ss_pred HhhcchH-----HHHHHHHHHHHHhccCcccchhHHHH
Confidence 7644322 23345678888888877666664433
No 291
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=62.09 E-value=28 Score=32.24 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=55.6
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHH---HHHHHHHHHHHHHhh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TAR---ARRKAAALLRILRRW 655 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~---~k~kA~~lL~~l~~~ 655 (683)
++..|.+-|.++++.++-.|+.+|-.+..+++... ...+....++..|..++.+. +.. +|+|+..+|......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f-~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRF-HREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHH-HHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHH-HHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 46678888999999999999999988888876644 44455567888999887765 443 899977777766653
No 292
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=61.86 E-value=3.6e+02 Score=32.71 Aligned_cols=255 Identities=13% Similarity=0.084 Sum_probs=136.1
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
.+..|..+.... +.++..--..+|...++-+++ .....++-..|..+.+..... +|+.+...+-.++..|+...++
T Consensus 531 ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s--~DP~V~~~~qd~f~el~q~~~~ 606 (1005)
T KOG2274|consen 531 ILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYS--EDPQVASLAQDLFEELLQIAAN 606 (1005)
T ss_pred HHHHHHHHcccc-cHHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHh
Confidence 344455544433 566666666788888887763 334445677888777543221 2888888888888888765555
Q ss_pred HHHHhcccCcHHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCcc---hhhHHhhhcccHHHHHHhh-cCCChhHHHHHH
Q 048793 452 KTRIMETEGALNGVIEVLRSGA---TWEAKGNAAATIFSLSGVHA---HRKTLGRKTRVVKGLMDLV-KGGPTSSKRDAL 524 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~---~~~~~~~Aa~~L~~Ls~~~~---~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~ 524 (683)
..-+.+ -.||.||.+|.... .......|+.+|.-+....+ +...+ .-+.|++.+.. .+++.....++-
T Consensus 607 ~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~---~~~FpaVak~tlHsdD~~tlQ~~~ 681 (1005)
T KOG2274|consen 607 YGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI---CYAFPAVAKITLHSDDHETLQNAT 681 (1005)
T ss_pred hcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH---HHHhHHhHhheeecCChHHHHhHH
Confidence 444443 47999999998542 13444455555554444322 33333 34788998875 445566777777
Q ss_pred HHHHHhcCCc-c-hhHHHHhcC-----chHHHHHHhccC-chh----HHHHHHHHHHcCCcHHHHHHcCc-hHHHH-HHH
Q 048793 525 VAILNLAGDR-E-TVGRLVERG-----IVEIVAEAMDVL-PEE----SVTILEAVVKRGGLTAIVAAYNT-IKKLC-ILL 590 (683)
Q Consensus 525 ~aL~nLs~~~-~-n~~~iv~aG-----~V~~Lv~lL~~~-~~~----~~~aL~~L~~l~~~~e~~~~~g~-v~~Lv-~lL 590 (683)
.+|..+-... + -...-.+-| ++..+-++|... .+. +..-+..|...++..-+ ...+. +.+++ ++-
T Consensus 682 EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~-~n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 682 ECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELG-PNLDQILRAVISRLQ 760 (1005)
T ss_pred HHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHH
Confidence 7777765432 1 111112222 223444555533 222 22223333322221111 11111 23333 333
Q ss_pred hcCChHHHHHHHHHHHHHHhcCCchHHHHHHhc---CCcHHHHHHHhhcC
Q 048793 591 REGSDTSRESAAATLVTICRKGGSEMVADIAAV---PGIERVIWELMESG 637 (683)
Q Consensus 591 ~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~---~G~~~~L~~Ll~~~ 637 (683)
+.....+-++-+.++..|.....+. ....+-. .+..+.+.-++...
T Consensus 761 ~ae~lsviQsLi~VfahL~~t~~~~-~l~FL~Slp~~~g~~AlefVMteW 809 (1005)
T KOG2274|consen 761 QAETLSVIQSLIMVFAHLVHTDLDQ-LLNFLSSLPGPTGEPALEFVMTEW 809 (1005)
T ss_pred HhhhHHHHHHHHHHHHHHhhCCHHH-HHHHHHhCCCCCCCcHHHHHHHHH
Confidence 4567778888888888887654332 2222222 34555555554443
No 293
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=61.48 E-value=1e+02 Score=38.30 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC-----cch
Q 048793 462 LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD-----RET 536 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-----~~n 536 (683)
++.+..-+++=...+.|.+|...|..||..-..-..+ ..++|-+|.++.+...+++..|+.+|..+-.. +.|
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 4444445554335788999999999999765544444 45899999999999899999999998877442 223
Q ss_pred hHHHHhcCchHHHHHHhcc-Cchh----HHHHHHHHHHcCCc------------------HHHH---------HHc-Cch
Q 048793 537 VGRLVERGIVEIVAEAMDV-LPEE----SVTILEAVVKRGGL------------------TAIV---------AAY-NTI 583 (683)
Q Consensus 537 ~~~iv~aG~V~~Lv~lL~~-~~~~----~~~aL~~L~~l~~~------------------~e~~---------~~~-g~v 583 (683)
...+.+ =..|.|-.++.+ .+.. -+.+++.|+..+-. .+.. .+. ..|
T Consensus 501 aniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 501 ANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred chhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 333332 245666666665 2221 34455555542210 0000 000 112
Q ss_pred H-HHHHHHhcCChHHHHHHHHHHHHHHhcCC-------------------chHHHHHH---------------hcCCcHH
Q 048793 584 K-KLCILLREGSDTSRESAAATLVTICRKGG-------------------SEMVADIA---------------AVPGIER 628 (683)
Q Consensus 584 ~-~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~-------------------~~~~~~~~---------------~~~G~~~ 628 (683)
. ..+.++....+-+|+.-+..|.-||..-+ +...+..+ .+.+++|
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllP 659 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLP 659 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHH
Confidence 2 23334444556788877777877886433 11222211 1334567
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 629 VIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 629 ~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
+|..=+.++.+-+-.+|...|..|-+-
T Consensus 660 Ll~Q~ltD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 660 LLQQGLTDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred HHHHhccCcchhhHHHHHHHHHHHHHh
Confidence 777778888899999999888888763
No 294
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.43 E-value=3.8e+02 Score=32.81 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=81.4
Q ss_pred hhhHHHHHHHhcc------C-CCHHHHHHHHHHHHhhhc---cCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHH
Q 048793 370 KMTASFLINKLAT------S-QSMEAANDAVYELRSLSK---TDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAV 439 (683)
Q Consensus 370 ~~~i~~Lv~~L~s------~-~~~~~~~~A~~~L~~La~---~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~ 439 (683)
.+.++++++.|.+ . .++.....|+..+..++. .....+.. .+.=.++.+...++++ ---++..|+
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~----~g~Lrarac 483 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSP----YGYLRARAC 483 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCc----hhHHHHHHH
Confidence 3567777887762 1 134455566666665552 12213332 3344566666777887 567899999
Q ss_pred HHHHhccc-CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhh-hcccHHHHHHhhcCC
Q 048793 440 TTILNLSI-LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGR-KTRVVKGLMDLVKGG 515 (683)
Q Consensus 440 ~aL~nLs~-~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~-~~G~i~~Lv~lL~~~ 515 (683)
+.+...+. +=.+.... . .+++.....|.+..+..++..|+-+|..+-.+.+ +...+.. ..+.++.|..+.+.-
T Consensus 484 ~vl~~~~~~df~d~~~l-~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 484 WVLSQFSSIDFKDPNNL-S--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHHHHHHhccCCChHHH-H--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 99999983 21222222 2 3566777777754468889999999987766544 3343322 134555566665543
No 295
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=59.17 E-value=11 Score=39.83 Aligned_cols=61 Identities=13% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW 339 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 339 (683)
.+.+=+-||+|.+.|.-|+.= .+||..|-+|=. .-...||.|+.++.+ +.++++.+.++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHhc
Confidence 345567899999999999855 779998886632 235689999988763 3567777766654
No 296
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=59.16 E-value=38 Score=31.11 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=55.5
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCC--HHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT--ARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~--~~~k~kA~~lL~~l~~ 654 (683)
++..|-+-|..+++.++-.|..+|-.+..+++..... .+...+++..|..++.... +.+++|+..++.....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~-ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHL-EVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHH-HHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4667888888999999999999988888887765444 4557788899998877753 3489997777766655
No 297
>PRK10869 recombination and repair protein; Provisional
Probab=58.79 E-value=3.4e+02 Score=31.41 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=40.0
Q ss_pred hcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhccc
Q 048793 53 RSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNG 108 (683)
Q Consensus 53 ~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~ 108 (683)
++..+..+++.+|.--++||...+.. +.-..-|++-+..|..+..+.+.+...
T Consensus 178 ~~~~~~~~~~d~l~fql~Ei~~~~l~---~gE~eeL~~e~~~L~n~e~i~~~~~~~ 230 (553)
T PRK10869 178 QQSQERAARKQLLQYQLKELNEFAPQ---PGEFEQIDEEYKRLANSGQLLTTSQNA 230 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888999999999999987753 333666777777888888887777755
No 298
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.18 E-value=3.8e+02 Score=31.82 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=77.0
Q ss_pred cccHHHHHHh-hcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC--chh---HHHHHHHHHHcCCcHH
Q 048793 502 TRVVKGLMDL-VKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL--PEE---SVTILEAVVKRGGLTA 575 (683)
Q Consensus 502 ~G~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~--~~~---~~~aL~~L~~l~~~~e 575 (683)
.++|..|+.. .++.+.++++.|+.+|.-++..+.+ ..+..|++|.+. +.+ ++-||++-|.-.|..+
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 4677778777 5677888999999999887765433 245567777643 444 4555555555445443
Q ss_pred HHHHcCchHHHHHHHhcCChHHHHHHHHHHHHH-HhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHH-HHHHHHHHHHH
Q 048793 576 IVAAYNTIKKLCILLREGSDTSRESAAATLVTI-CRKGGSEMVADIAAVPGIERVIWELMESGTARAR-RKAAALLRILR 653 (683)
Q Consensus 576 ~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L-~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k-~kA~~lL~~l~ 653 (683)
.+ ..|-.++.....-+|+-|+-++..+ +.+.+. ..-+ ..|+.+.+..++.+....+- +--+-+-+.+-
T Consensus 625 Ai------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~-~~pk---v~~frk~l~kvI~dKhEd~~aK~GAilAqGil 694 (929)
T KOG2062|consen 625 AI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ-LCPK---VNGFRKQLEKVINDKHEDGMAKFGAILAQGIL 694 (929)
T ss_pred HH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccc-cCch---HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Confidence 32 2222233334445666666665544 333221 1111 14566667666666644433 33333444555
Q ss_pred hhhcccc
Q 048793 654 RWAAGLD 660 (683)
Q Consensus 654 ~~~~~~~ 660 (683)
....+|.
T Consensus 695 daGGrNv 701 (929)
T KOG2062|consen 695 DAGGRNV 701 (929)
T ss_pred hcCCceE
Confidence 5444444
No 299
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=57.85 E-value=3.8e+02 Score=33.18 Aligned_cols=218 Identities=14% Similarity=0.062 Sum_probs=118.5
Q ss_pred hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
.++|..|..-|++. |..++..|+.-+..+..... ..++. .+|..+++++.-..+..+-..|+-+|..|+.-.
T Consensus 340 E~vie~Lls~l~d~----dt~VrWSaAKg~grvt~rlp--~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDT----DTVVRWSAAKGLGRVTSRLP--PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHhccCC----cchhhHHHHHHHHHHHccCc--HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 36778888888888 99999999999999976544 33333 377788887765544667778999999988644
Q ss_pred chhhHHhhhcccHHHHHHhhcCC--------ChhHHHHHHHHHHHhcCCcc--hhHHHHhcCchHHHHHHhccCchh--H
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGG--------PTSSKRDALVAILNLAGDRE--TVGRLVERGIVEIVAEAMDVLPEE--S 560 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~--------~~~~~~~A~~aL~nLs~~~~--n~~~iv~aG~V~~Lv~lL~~~~~~--~ 560 (683)
--...... .++|.++.-|.-+ ...++..|+-+.|.++..-+ ....++..=+-..|+..+.+ ++. .
T Consensus 412 lLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFD-revncR 488 (1133)
T KOG1943|consen 412 LLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFD-REVNCR 488 (1133)
T ss_pred CcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcC-chhhHh
Confidence 32222221 3555555544211 23477888888888876432 11222221111222333332 332 2
Q ss_pred HHHHHHHHHcCCcHHHHHHcCchHHHHHHHhc---CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHH----HH
Q 048793 561 VTILEAVVKRGGLTAIVAAYNTIKKLCILLRE---GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIW----EL 633 (683)
Q Consensus 561 ~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~---~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~----~L 633 (683)
..|-+++-- .+...|..|.=..++.+ -+-..+.|+-.. +|. .+..-.|...+++ .-
T Consensus 489 RAAsAAlqE------~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~---l~~--------~ia~~~~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 489 RAASAALQE------NVGRQGNFPHGISLISTIDYFSVTNRSNCYLD---LCV--------SIAEFSGYREPVFNHLLTK 551 (1133)
T ss_pred HHHHHHHHH------HhccCCCCCCchhhhhhcchhhhhhhhhHHHH---HhH--------HHHhhhhHHHHHHHHHHhc
Confidence 233333321 11111222211122221 233334443332 332 1111233333333 22
Q ss_pred -hhcCCHHHHHHHHHHHHHHHhhhcc
Q 048793 634 -MESGTARARRKAAALLRILRRWAAG 658 (683)
Q Consensus 634 -l~~~~~~~k~kA~~lL~~l~~~~~~ 658 (683)
+.+.+..+|+.|++.|..|+.+.+.
T Consensus 552 Kv~HWd~~irelaa~aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 552 KVCHWDVKIRELAAYALHKLSLTEPK 577 (1133)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhHH
Confidence 5567999999999999999987765
No 300
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=57.71 E-value=7 Score=33.85 Aligned_cols=27 Identities=22% Similarity=0.646 Sum_probs=23.8
Q ss_pred CCccccchhhHHHHHhcCCCCCCCCCCc
Q 048793 293 ATGQTYDRQSISLWIESGHNTCPKTGQT 320 (683)
Q Consensus 293 ~~g~ty~r~~I~~w~~~g~~~cP~~~~~ 320 (683)
.|+|.|--.||.+|+.. ...||.+.++
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 68999999999999997 6689998764
No 301
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.20 E-value=90 Score=36.55 Aligned_cols=116 Identities=15% Similarity=0.059 Sum_probs=79.4
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
.+.+-.+++...+. +-.+|...+..|..+..... .+.--+-.+.+..|..-|... .+.++..|+.+|..+-.++
T Consensus 84 ~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Dr----ep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 84 AGTFYHLLRGTESK-DKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDR----EPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhcc----CchHHHHHHHHHHHHhcCC
Confidence 34566677777777 88899999999988876443 334444456777777666666 7889999999999886432
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG 499 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~ 499 (683)
.+- + ..+...++.++++..++++|..| |.+++.+......|+
T Consensus 158 ~de----e-~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 158 KDE----E-CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIV 199 (892)
T ss_pred CCC----c-ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHH
Confidence 221 1 13566788899988889999764 566666655444443
No 302
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=56.15 E-value=3.3 Score=50.66 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=39.7
Q ss_pred CCCCcccccccccCCCC-ceecCCccccchhhHHHHHhcCCCCCCCCCC
Q 048793 272 NVPADFRCPISLELMRN-PVVVATGQTYDRQSISLWIESGHNTCPKTGQ 319 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~d-Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~ 319 (683)
..-+.+.|+||+++|+. --+.-|||-||-.|+.-|... +..||.|+.
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 34566799999999994 456799999999999999986 678999973
No 303
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=55.20 E-value=1.1e+02 Score=29.03 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=73.6
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhH
Q 048793 459 EGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVG 538 (683)
Q Consensus 459 ~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 538 (683)
|..++.|..+|+++.+...|..+.++|..|-..|.++.+... +....-.. .+.+..... . .+.+....+ .-.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~~--~~~~~~~~~-~--~l~~~~~~~-~~e 80 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKSS--ENSNDESTD-I--SLPMMGISP-SSE 80 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCcccc--ccccccchh-h--HHhhccCCC-chH
Confidence 346778899999887799999999999999988888777443 11110000 011111111 1 111111111 222
Q ss_pred HHHhcCchHHHHHHhccCc-----hhHHHHHHHHHHcCCcHHHHHHc-CchHHHHHHHhcCChHHHHHHHHHHH
Q 048793 539 RLVERGIVEIVAEAMDVLP-----EESVTILEAVVKRGGLTAIVAAY-NTIKKLCILLREGSDTSRESAAATLV 606 (683)
Q Consensus 539 ~iv~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~~~~e~~~~~-g~v~~Lv~lL~~~s~~~ke~A~~aL~ 606 (683)
...-..++..|+.+|.+.. ..+..|+..+...-+... ..-. ..+|.++..+++.++..+|.-..-|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333456788888887431 123333333322111111 1111 24788888888877777766444433
No 304
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=55.16 E-value=53 Score=38.36 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=89.1
Q ss_pred HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793 412 EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV 491 (683)
Q Consensus 412 ~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~ 491 (683)
...++|.|..-++.. +..+|+.++..+..++..-+ ...++. -.+|.|-.+-....+..++.+++.++..+..
T Consensus 387 ~~~IlplL~~S~~~~----~~~iQ~~~L~~lptv~e~iD--~~~vk~-~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q- 458 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDS----DVQIQELALQILPTVAESID--VPFVKQ-AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ- 458 (700)
T ss_pred HHHHHHHHHHHhcCc----chhhHHHHHHhhhHHHHhcc--HHHHHH-HHHHHhhcchhcccchHHHHHHHHHHHHHHH-
Confidence 345777777777777 99999999999998875433 233343 4677776664444468899999999998881
Q ss_pred cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhcc
Q 048793 492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDV 555 (683)
Q Consensus 492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~ 555 (683)
.-.+..+ ...+.++..-.+..++......+.+..++....-+...++...++|.++.+...
T Consensus 459 ~lD~~~v---~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 459 RLDKAAV---LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred HHHHHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 1122222 234555555556667777777777777776655444555566788888877653
No 305
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=54.38 E-value=1.8e+02 Score=34.75 Aligned_cols=196 Identities=15% Similarity=0.085 Sum_probs=119.9
Q ss_pred HHHhcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHH--HHHHhhcCCCh
Q 048793 441 TILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVK--GLMDLVKGGPT 517 (683)
Q Consensus 441 aL~nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~--~Lv~lL~~~~~ 517 (683)
+|.+.... .++++.+.+. |++..+...++.-...+....+.+.+.+++...+++..... ...+. .+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~-~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDN-GGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI-FEFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhc-ccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcch
Confidence 67777654 6889999998 99999999998544678899999999999988776555543 22222 22234444443
Q ss_pred -hHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHH-HHHHHh-cCC
Q 048793 518 -SSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKK-LCILLR-EGS 594 (683)
Q Consensus 518 -~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~-Lv~lL~-~~s 594 (683)
+....|+..|..+..+.+. ....+-=+..-+ .-+..................... +.+++. ..+
T Consensus 572 ~ersY~~~siLa~ll~~~~~---~~~~~~r~~~~~----------~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~ 638 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEK---TTECVFRNSVNE----------LLVEAISRWLTSEIRVINDRSFFPRILRILRLSKS 638 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCc---CccccchHHHHH----------HHHHHhhccCccceeehhhhhcchhHHHHhcccCC
Confidence 5567788888887665443 111111111111 111111121111111111122222 555554 457
Q ss_pred hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHH
Q 048793 595 DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES-GTARARRKAAALLRILR 653 (683)
Q Consensus 595 ~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL~~l~ 653 (683)
+..+-+|++++.+++...++ ..+.+.+.|+++.+..+-.. ...++++.|..++....
T Consensus 639 ~g~~lWal~ti~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 639 DGSQLWALWTIKNVLEQNKE--YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred CchHHHHHHHHHHHHHcChh--hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 77888999999999987654 56667788888888876333 26677777777665543
No 306
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=53.80 E-value=2.8e+02 Score=28.84 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=105.1
Q ss_pred HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793 412 EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV 491 (683)
Q Consensus 412 ~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~ 491 (683)
...++|.|+..|... +..+-++..|..+|.++- + ++..+.+-++.+.. ..++++.+..+|..+--.
T Consensus 65 ~~~Av~~l~~vl~de--sq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp-~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDP-CKEVRETCELAIKRLEWK 130 (289)
T ss_pred cchhhHHHHHHhccc--ccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCC-ccccchHHHHHHHHHHHh
Confidence 356899999988765 126778889999987754 2 23444444555333 456666555555555321
Q ss_pred cc--------------hhhHHhhhcccHHHHHHhhcCCChh--HHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhcc
Q 048793 492 HA--------------HRKTLGRKTRVVKGLMDLVKGGPTS--SKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDV 555 (683)
Q Consensus 492 ~~--------------~~~~i~~~~G~i~~Lv~lL~~~~~~--~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~ 555 (683)
+. .+..+ . .+-|.-|-..|.+.+.. -+..|.-.|.|+-. ..+|.+|++=+..
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p~-~-~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPPA-N-LSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLAD 198 (289)
T ss_pred hccccccccCccccCCCCCcc-c-cccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhccc
Confidence 10 00010 1 22344454444443322 11222222222211 0123334444432
Q ss_pred Cchh-HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhc--CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHH
Q 048793 556 LPEE-SVTILEAVVKRGGLTAIVAAYNTIKKLCILLRE--GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWE 632 (683)
Q Consensus 556 ~~~~-~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~ 632 (683)
+... .-++.-+|..+ ....+++.|.+.|.. ..+-+|..|+.+|..++. + ..++.|.+
T Consensus 199 ~SalfrhEvAfVfGQl-------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e----------~~~~vL~e 258 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQL-------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD---E----------DCVEVLKE 258 (289)
T ss_pred chHHHHHHHHHHHhhc-------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---H----------HHHHHHHH
Confidence 2211 11222222221 111357888888864 578899999999988775 2 22556778
Q ss_pred HhhcCCHHHHHHHHHHHHHHH
Q 048793 633 LMESGTARARRKAAALLRILR 653 (683)
Q Consensus 633 Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
.+.+..+-+++-+...|.++.
T Consensus 259 ~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHH
Confidence 888888888888888887654
No 307
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.40 E-value=1.1e+02 Score=32.44 Aligned_cols=141 Identities=13% Similarity=0.178 Sum_probs=90.8
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
++...+..|.+. +.+...+++.-|+.|+..+++...-+.. -.|..+++-+++. ...+-..|+.++..+...-++
T Consensus 89 al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl----RS~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 89 ALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL----RSAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred HHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHH
Confidence 455567888888 9999999999999999877654443332 4677788888887 778888888888877543222
Q ss_pred HHHHhcccCcHHHHHHHHh-cC--CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793 452 KTRIMETEGALNGVIEVLR-SG--ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~-~~--~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
.|.. .+..++..|. .+ ++.=+++.|-.+|..+...-.. .-+++.|...+.+.+++++..++....
T Consensus 163 --~i~~---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 163 --SIDQ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred --HHHH---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhcccc
Confidence 2222 2344554443 22 1233577777888777654322 224555666677777777766665554
Q ss_pred Hh
Q 048793 529 NL 530 (683)
Q Consensus 529 nL 530 (683)
+.
T Consensus 231 ~~ 232 (334)
T KOG2933|consen 231 RC 232 (334)
T ss_pred cc
Confidence 43
No 308
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=53.32 E-value=2.3e+02 Score=34.28 Aligned_cols=176 Identities=14% Similarity=0.112 Sum_probs=100.8
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHH
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLM 509 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv 509 (683)
+..-+..|+..+........ +...-...|-+..++++.....+..+...|+..|-.++..-. ...... .+..+.|.
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~--~~v~p~ll 342 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA--KNVFPSLL 342 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH--HhhcchHH
Confidence 77777778777766544333 111111124555566666555578888888888888876432 222222 36788888
Q ss_pred HhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC---C--cHHHHHHcCch
Q 048793 510 DLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG---G--LTAIVAAYNTI 583 (683)
Q Consensus 510 ~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~---~--~~e~~~~~g~v 583 (683)
+-+.+.....+..+..++-..+... .- .-..+.++..+.+. +.....+...+...- + ..+.-..-+.+
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~-~l-----~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~ 416 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNST-PL-----SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLV 416 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhcc-cH-----HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHh
Confidence 8888766555554444444333310 11 12344556666643 444555555554311 1 11111112457
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhcCCch
Q 048793 584 KKLCILLREGSDTSRESAAATLVTICRKGGSE 615 (683)
Q Consensus 584 ~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~ 615 (683)
+.++.........+|..|..++..+-...++.
T Consensus 417 p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 417 PHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777888999999999988877655543
No 309
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=53.09 E-value=1.1e+02 Score=28.27 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred HHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC--chhHHHHhcccCcHHHHHHH
Q 048793 391 DAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL--EANKTRIMETEGALNGVIEV 468 (683)
Q Consensus 391 ~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~--~~~k~~I~~~~G~I~~Lv~l 468 (683)
.+.-.|+.+...++.+- ..++..|.+-|.++ ++.+|..|+.+|-.+..+ +.....+... .++..|+.+
T Consensus 24 ~~~l~icD~i~~~~~~~-----kea~~~l~krl~~~----~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l 93 (140)
T PF00790_consen 24 SLILEICDLINSSPDGA-----KEAARALRKRLKHG----NPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKL 93 (140)
T ss_dssp HHHHHHHHHHHTSTTHH-----HHHHHHHHHHHTTS----SHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccH-----HHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHH
Confidence 44445555554443222 24566778888888 999999999988888765 3556777776 799999999
Q ss_pred HhcCCCHH---HHHHHHHHHHHhhc
Q 048793 469 LRSGATWE---AKGNAAATIFSLSG 490 (683)
Q Consensus 469 L~~~~~~~---~~~~Aa~~L~~Ls~ 490 (683)
+.+..... +++.+..+|...+.
T Consensus 94 ~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 94 IKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HccCCCCchhHHHHHHHHHHHHHHH
Confidence 88654444 78888888876654
No 310
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=52.85 E-value=1.1e+02 Score=29.20 Aligned_cols=142 Identities=14% Similarity=0.138 Sum_probs=77.0
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCC-CCCChhhHHHHHHHHHhcc-cCc
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDT-ASRLPNLQVNAVTTILNLS-ILE 449 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~-~~~d~~~qe~A~~aL~nLs-~~~ 449 (683)
-.+.|.+.|+...+...|+++++.|..+-.=++ .+......+. + ... ...+......... ..+.+ ..+
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-~~~k~~~~~~-~-------~~~~~~~~~~~~~~~l~-~~~~~~~~e 80 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDP-YKHKSIQKSL-D-------SKSSENSNDESTDISLP-MMGISPSSE 80 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-HHHhcccccC-C-------ccccccccccchhhHHh-hccCCCchH
Confidence 345677888776578999999999999887776 4333222110 0 100 0001112221111 11222 223
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
+.-.. .++..|+.+|+...-..-...++.++.++..... .+.... .-.+|.+++.+++.++..++.-..-|.
T Consensus 81 e~y~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 81 EYYPT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33222 4667788899865334444556666665553322 222222 468999999999776666666555554
Q ss_pred Hh
Q 048793 529 NL 530 (683)
Q Consensus 529 nL 530 (683)
.|
T Consensus 154 ~l 155 (160)
T PF11865_consen 154 DL 155 (160)
T ss_pred HH
Confidence 44
No 311
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=52.30 E-value=1.2e+02 Score=33.23 Aligned_cols=86 Identities=10% Similarity=0.148 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALN 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~ 463 (683)
.+.+-..|+..+..+...++..-..+.++|.++.++..+. .+.. .+.++....-.+|..||.+....+.+.+. +.++
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~-~s~e~l~~lP~~l~AicLN~~Gl~~~~~~-~~l~ 199 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL-PSSEVLTSLPNVLSAICLNNRGLEKVKSS-NPLD 199 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC-CcHHHHHHHHHHHhHHhcCHHHHHHHHhc-ChHH
Confidence 3566678888899999989988889999999999999887 4421 14556666667788889999999999998 9999
Q ss_pred HHHHHHhcC
Q 048793 464 GVIEVLRSG 472 (683)
Q Consensus 464 ~Lv~lL~~~ 472 (683)
.+++++.+.
T Consensus 200 ~~f~if~s~ 208 (379)
T PF06025_consen 200 KLFEIFTSP 208 (379)
T ss_pred HHHHHhCCH
Confidence 999999754
No 312
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.92 E-value=65 Score=39.73 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=92.7
Q ss_pred cHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc
Q 048793 415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA 493 (683)
Q Consensus 415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~ 493 (683)
..|.++...+...--+|+++|..|.-+|..+.. ..+.+. ..++.|+.++....++-+|.|+..++..|+..-.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce------s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE------SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 566666776543222389999999999998753 333332 3588999999966589999999999998876543
Q ss_pred hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhccC
Q 048793 494 HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDVL 556 (683)
Q Consensus 494 ~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~ 556 (683)
|- . .-.-+.|...|.+.++.+++.|+.+|.+|-.++ |++ -|.++-+..+|.++
T Consensus 994 nl---i--e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~ 1047 (1251)
T KOG0414|consen 994 NL---I--EPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDP 1047 (1251)
T ss_pred cc---c--chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCC
Confidence 32 1 134567888889999999999999999997765 344 47788888888754
No 313
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=51.69 E-value=3e+02 Score=28.56 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=83.5
Q ss_pred hHHHHHHhCcHHHHHHhhCCCCCCCC-----hhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCC---HHH
Q 048793 406 SRACIAEAGAIALLARHLGPDTASRL-----PNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGAT---WEA 477 (683)
Q Consensus 406 nr~~i~~~G~Ip~Lv~lL~s~~~~~d-----~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~---~~~ 477 (683)
+|-.+.=.+.+|.++.-+..+ + ..+. .++..|..++... +. +.+..+.....++.- .+-
T Consensus 103 ~rll~~~la~LP~ll~~~d~~----~~i~~~~~~~-~~A~~La~~a~~~-------~~-~~La~il~~ya~~~fr~~~df 169 (262)
T PF14225_consen 103 SRLLFLLLALLPRLLHAFDDP----NPIQPDQECI-EIAEALAQVAEAQ-------GL-PNLARILSSYAKGRFRDKDDF 169 (262)
T ss_pred ccHHHHHHHHHHHHHHHhccc----ccccccHHHH-HHHHHHHHHHHhC-------CC-ccHHHHHHHHHhcCCCCHHHH
Confidence 555555567788888877776 4 3333 4455666666211 11 233334444433321 222
Q ss_pred HHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc
Q 048793 478 KGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP 557 (683)
Q Consensus 478 ~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~ 557 (683)
...++..|+.-.. ++. . ...+..|+++|.++.+-.+...+..|..|-.+-+.+.. ..++.+.+|+++|..
T Consensus 170 l~~v~~~l~~~f~-P~~-----~-~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t-- 239 (262)
T PF14225_consen 170 LSQVVSYLREAFF-PDH-----E-FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT-- 239 (262)
T ss_pred HHHHHHHHHHHhC-chh-----H-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC--
Confidence 3333333332111 111 1 34677899999998888999999999998776654433 666789999999973
Q ss_pred hhHHHHHHHHHH
Q 048793 558 EESVTILEAVVK 569 (683)
Q Consensus 558 ~~~~~aL~~L~~ 569 (683)
+....|+.+|-.
T Consensus 240 ~~~~eAL~VLd~ 251 (262)
T PF14225_consen 240 DLWMEALEVLDE 251 (262)
T ss_pred ccHHHHHHHHHH
Confidence 445666666643
No 314
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=51.53 E-value=5.7 Score=45.99 Aligned_cols=47 Identities=19% Similarity=0.476 Sum_probs=38.5
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHh--cCCCCCCCCCCccC
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIE--SGHNTCPKTGQTLA 322 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~--~g~~~cP~~~~~l~ 322 (683)
+..||||.+...+|+.+.|.|.||+.|+-.-|. .+...||.|+....
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 445999999999999999999999999888654 34567999985443
No 315
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=51.22 E-value=16 Score=27.90 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=21.4
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcC-CCCCCCCCC
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG-HNTCPKTGQ 319 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g-~~~cP~~~~ 319 (683)
+.|.||.|++- -|-. .+.+-+.+++..++ ...||+|..
T Consensus 1 ~~f~CP~C~~~-~~~~------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKG-FSES------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCc-cCHH------HHHHHHHhHCcCCCCCccCCCchh
Confidence 46899998873 2211 23333444444332 357999975
No 316
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=51.14 E-value=29 Score=38.54 Aligned_cols=170 Identities=12% Similarity=0.049 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC----CcchhH-HHHhc-C-chHHHH
Q 048793 478 KGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG----DRETVG-RLVER-G-IVEIVA 550 (683)
Q Consensus 478 ~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~----~~~n~~-~iv~a-G-~V~~Lv 550 (683)
+..|.+++.-+.-++..+...+-...+.......|.+..-..+..++|++.|++. +-.|.. ...+. | .+..++
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~ 487 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKML 487 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 3344444444444555554444435666666677766566678889999998864 112321 22221 1 123333
Q ss_pred HHhcc---C-c---hhHHHHHHHHHHcCCcHHHHHHcCc----hHHHHHH----HhcCChHHHHHHHHHHHHHHhcCCch
Q 048793 551 EAMDV---L-P---EESVTILEAVVKRGGLTAIVAAYNT----IKKLCIL----LREGSDTSRESAAATLVTICRKGGSE 615 (683)
Q Consensus 551 ~lL~~---~-~---~~~~~aL~~L~~l~~~~e~~~~~g~----v~~Lv~l----L~~~s~~~ke~A~~aL~~L~~~~~~~ 615 (683)
..-.. + . +.+.++|+++..+ -+.+...+. -..+.++ .-.+.-.+|=||+.++.||.++..-.
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQv---lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQF---LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHH---HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 33221 1 1 1244455544331 111111110 0112222 22356678899999999998864321
Q ss_pred HHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHH
Q 048793 616 MVADIAAVPGIERVIWELMESG-TARARRKAAALLRI 651 (683)
Q Consensus 616 ~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL~~ 651 (683)
.+.+=..+-+.+.|..|+.+. +-++|-+|+..|..
T Consensus 565 -lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 565 -LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred -ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 122222334667777776654 88999888888765
No 317
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.47 E-value=1.9e+02 Score=28.60 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccCCcc--chhhhcHHHHHHHHhhhhHHHHHHHhcCCCCCCh-----hHhhhHHHHHHHHHHHHHHHHH
Q 048793 32 ESLLILSQEVSSMKPLQ--FLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSP-----PTVLCFEEMYIVLQRMKTLIED 104 (683)
Q Consensus 32 ~~l~~l~~~i~~~~~~~--~~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~-----~~~~~l~~L~~~l~~a~~ll~~ 104 (683)
.+++.++.+|....... .+||+++.+.-.+++...-.+++|+..-.+ +|+ .+..+++|...|.--..-+-..
T Consensus 20 EE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~-~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 20 EEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAG-FPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 45667777777643333 389999999999999999999999854332 555 3345566665555444444444
Q ss_pred hcccch-HHHHHhhHHHHHHHHHHHHHHHH-HHhcCCCccccchhhHHHHHHHHHHHHhhh
Q 048793 105 CYNGSK-MWLLMQIETAANNFHELTIDLST-LLDIMPLQELRLSQDVEDVVVLIKKQCSKR 163 (683)
Q Consensus 105 c~~~sk-lyl~~~~~~~~~~~~~~~~~l~~-~l~~~p~~~~~~s~ev~e~v~~~~~q~~~~ 163 (683)
|-.+++ | =+.-...+.-+-+++.+|.+ +|+.+--.+++-..+....++.+...++..
T Consensus 99 ~~ps~~EL--~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~f 157 (204)
T COG2178 99 RLPSPEEL--GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEF 157 (204)
T ss_pred CCCCHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhc
Confidence 445444 2 01111122233344444443 344444455555555666666666666655
No 318
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.21 E-value=4.6e+02 Score=30.30 Aligned_cols=54 Identities=24% Similarity=0.177 Sum_probs=43.6
Q ss_pred hhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhccc
Q 048793 52 QRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNG 108 (683)
Q Consensus 52 k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~ 108 (683)
+++-++..+++.+|.-=++||-..+.. +.-...|.+-+..|.....|.+.|.+.
T Consensus 177 ~~~~~e~~~~~d~L~fq~~Ele~~~l~---~gE~e~L~~e~~rLsn~ekl~~~~~~a 230 (557)
T COG0497 177 QEKERERAQRADLLQFQLEELEELNLQ---PGEDEELEEERKRLSNSEKLAEAIQNA 230 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467789999999999999999877753 233778888888999888888888644
No 319
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=50.13 E-value=83 Score=27.83 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=50.3
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHh---hc---CCHHHHHHHHHHHHHHH
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELM---ES---GTARARRKAAALLRILR 653 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll---~~---~~~~~k~kA~~lL~~l~ 653 (683)
.+..|.+.|.+.++..+-.|..+|..+..+++...... +....++.-++.+. .. ....+|+++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~-i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQE-VASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHH-HHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 35677777888899999999999999999988765554 44444444443321 11 26789999988887643
No 320
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=49.60 E-value=3.2e+02 Score=28.37 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=109.5
Q ss_pred hhHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc---
Q 048793 371 MTASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS--- 446 (683)
Q Consensus 371 ~~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs--- 446 (683)
.+++.|+..|... +.+-+|..|..+|..+. . .+..+.|-+..+.+ -..+.+.+..++..+-
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~--~---------~~~~~~l~k~~~dp----~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG--D---------PESLEILTKYIKDP----CKEVRETCELAIKRLEWKD 131 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhc--c---------hhhHHHHHHHhcCC----ccccchHHHHHHHHHHHhh
Confidence 4577788877643 25677888988887654 1 24556666666554 4566665555555541
Q ss_pred cCch--hH-HHH-hc-----ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCCh
Q 048793 447 ILEA--NK-TRI-ME-----TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPT 517 (683)
Q Consensus 447 ~~~~--~k-~~I-~~-----~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~ 517 (683)
..+. +. .-+ +. ..+-+..+-..|....-+...+. .++|.|-. +|. ..+|.+|++=+..++.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LRn-------~g~-EeaI~al~~~l~~~Sa 201 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLRN-------IGT-EEAINALIDGLADDSA 201 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhhc-------cCc-HHHHHHHHHhcccchH
Confidence 0000 00 000 00 00224444444433212222222 44444422 133 4578888888887766
Q ss_pred hHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCch---hHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCC
Q 048793 518 SSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPE---ESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGS 594 (683)
Q Consensus 518 ~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~---~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s 594 (683)
-.+..++.++..|-. --+||.|.+.|.+..+ +.-+|..+|..+++. .+++.|.+.+....
T Consensus 202 lfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-------~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-------DCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------HHHHHHHHHcCCcH
Confidence 677788888876632 3468889988875322 233344444333321 24667777777777
Q ss_pred hHHHHHHHHHHHHHHh
Q 048793 595 DTSRESAAATLVTICR 610 (683)
Q Consensus 595 ~~~ke~A~~aL~~L~~ 610 (683)
+-+++.+.-+|-.+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877655443
No 321
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.04 E-value=99 Score=35.28 Aligned_cols=142 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred cccHHHHHHh-hcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC--chh---HHHHHHHHHHcCCcHH
Q 048793 502 TRVVKGLMDL-VKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL--PEE---SVTILEAVVKRGGLTA 575 (683)
Q Consensus 502 ~G~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~--~~~---~~~aL~~L~~l~~~~e 575 (683)
.|+|..|+.. .++++.++++.|+.||.-+|-.+.+ .++..|++|.++ ..+ +.-||++-+.-.+...
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 5778888887 6778899999999999998876543 455567777643 222 3334444333222221
Q ss_pred HHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHH-HHHHHHHHHHHHHh
Q 048793 576 IVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTAR-ARRKAAALLRILRR 654 (683)
Q Consensus 576 ~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~-~k~kA~~lL~~l~~ 654 (683)
++..|-.++....+-+|+.|+-++..+.....++..-++ .++.+.+..+..+.... .-+--+-+-+.+.+
T Consensus 622 ------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v---~~I~k~f~~vI~~Khe~glaklGA~laqGi~~ 692 (926)
T COG5116 622 ------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV---KRIIKKFNRVIVDKHESGLAKLGAVLAQGISE 692 (926)
T ss_pred ------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH---HHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhh
Confidence 234454556666677788777776666543332222221 25555566555554332 22333444455555
Q ss_pred hhcccc
Q 048793 655 WAAGLD 660 (683)
Q Consensus 655 ~~~~~~ 660 (683)
...+|.
T Consensus 693 aGGRNv 698 (926)
T COG5116 693 AGGRNV 698 (926)
T ss_pred cCCceE
Confidence 444444
No 322
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=48.79 E-value=4.8e+02 Score=30.15 Aligned_cols=192 Identities=15% Similarity=0.141 Sum_probs=106.6
Q ss_pred HHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCC
Q 048793 394 YELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGA 473 (683)
Q Consensus 394 ~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~ 473 (683)
+.+..+.++++..+.. ..|.|-.-|++. -..++-.++.++..++...- -...+. .++..|-.+|++.
T Consensus 249 r~~~~ll~~n~q~~~q-----~rpfL~~wls~k----~emV~lE~Ar~v~~~~~~nv-~~~~~~--~~vs~L~~fL~s~- 315 (898)
T COG5240 249 RATVELLKENSQALLQ-----LRPFLNSWLSDK----FEMVFLEAARAVCALSEENV-GSQFVD--QTVSSLRTFLKST- 315 (898)
T ss_pred HHHHHHHHhChHHHHH-----HHHHHHHHhcCc----chhhhHHHHHHHHHHHHhcc-CHHHHH--HHHHHHHHHHhcc-
Confidence 3444444544433333 245555666665 56788888888888774321 112222 2455666667766
Q ss_pred CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHh
Q 048793 474 TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAM 553 (683)
Q Consensus 474 ~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL 553 (683)
....|-.|.++|-.|+.....+....+ +-+=.|+.+.+......|++.|.. ...+++..+++. .|+..+.=+
T Consensus 316 rv~~rFsA~Riln~lam~~P~kv~vcN-----~evEsLIsd~Nr~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~ 387 (898)
T COG5240 316 RVVLRFSAMRILNQLAMKYPQKVSVCN-----KEVESLISDENRTISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDM 387 (898)
T ss_pred hHHHHHHHHHHHHHHHhhCCceeeecC-----hhHHHHhhcccccchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhh
Confidence 588999999999999987776665544 223344455555566667766654 234556666543 244444444
Q ss_pred ccC-chhHHHHHHHHHHcCCcH-H--------HHHHcCc-------hHHHHHHHhcCChHHHHHHHHHHHH
Q 048793 554 DVL-PEESVTILEAVVKRGGLT-A--------IVAAYNT-------IKKLCILLREGSDTSRESAAATLVT 607 (683)
Q Consensus 554 ~~~-~~~~~~aL~~L~~l~~~~-e--------~~~~~g~-------v~~Lv~lL~~~s~~~ke~A~~aL~~ 607 (683)
+++ .-.+..|+..|+..-... . .....|+ +.++...+. ..|..||.|...|..
T Consensus 388 SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~ 457 (898)
T COG5240 388 SDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCT 457 (898)
T ss_pred ccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHH
Confidence 433 333666666665533211 1 1122344 344444443 466778877666433
No 323
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=48.30 E-value=69 Score=38.49 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=94.9
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI- 447 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~- 447 (683)
..+|.|++..... +...+..-+..|.+.-.+-+ +..+.. ....|.|+.-|+-. |..+|..+..++.-+-.
T Consensus 867 ~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP--~~vllp~~~~LlPLLLq~Ls~~----D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 867 DIVPILVSKFETA-PGSQKHNYLEALSHVLTNVP--KQVLLPQFPMLLPLLLQALSMP----DVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred hhHHHHHHHhccC-CccchhHHHHHHHHHHhcCC--HHhhccchhhHHHHHHHhcCCC----ccchhhhHhhhhhHHHHh
Confidence 3578888888744 55666677777777776555 233332 36778888888888 99999888888766542
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCC--HHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGAT--WEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~--~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
++.-...-+. -.+|.+..+=++..+ +.+|+.|...|..|... +...-.--. ..++.+|...|.++.--+++.|+
T Consensus 940 ~~tL~t~~~~--Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 940 SETLQTEHLS--TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred ccccchHHHh--HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHHHHHHHH
Confidence 2222222222 245555554333322 78999999999999984 433333333 67889999999876555777776
Q ss_pred HH
Q 048793 525 VA 526 (683)
Q Consensus 525 ~a 526 (683)
.+
T Consensus 1017 ~t 1018 (1030)
T KOG1967|consen 1017 DT 1018 (1030)
T ss_pred HH
Confidence 54
No 324
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.23 E-value=7.7 Score=41.30 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=35.2
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
.+.|..-.|-||.+=..+-+.+||||+-| |+. |.+....||+|++.+
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~--cs~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTL--CSKHLPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chH--HHhhCCCCchhHHHH
Confidence 35566667999998889999999999966 433 333356799999764
No 325
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=47.60 E-value=1.8e+02 Score=25.30 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=47.0
Q ss_pred HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHH
Q 048793 412 EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATI 485 (683)
Q Consensus 412 ~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L 485 (683)
+.+.+..|+.-.+.+ +...++.++..|..|..++.....+.+- |+.+.|-++=..- ++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~----~~~~~~~VL~Ll~~L~~~~~a~~~l~~i-G~~~fL~klr~~~-~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFP----PVPMKEEVLALLLRLLKSPYAAQILRDI-GAVRFLSKLRPNV-EPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCC----CCccHHHHHHHHHHHHhCcHHHHHHHHc-cHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 345666666666666 6668899999999999999888888887 8888765554333 455554443333
No 326
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.40 E-value=18 Score=37.98 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=38.9
Q ss_pred CceecCCccccchhhHHHHHhcCCCCCCCCCCcc--CC---CCCcchHHHHHHHHHH
Q 048793 288 NPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL--AH---TNLVTNTALKNLIALW 339 (683)
Q Consensus 288 dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l--~~---~~l~pn~~l~~~i~~~ 339 (683)
-|-++.||||+|..|+.+-+..+.-.||.|+++. .. ..+..|+++-+.++..
T Consensus 21 ~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 21 IPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4556669999999999888877777899999884 22 2355777777777664
No 327
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=47.01 E-value=15 Score=45.03 Aligned_cols=40 Identities=30% Similarity=0.715 Sum_probs=29.8
Q ss_pred CCCCcccccccc--cCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 272 NVPADFRCPISL--ELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 272 ~~p~~f~CPis~--~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
++|.++.||=|. ++..|+ .+-+| |+- -...||+|+.++..
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~-svgsG--fDL---------pdK~CPkCg~pl~k 951 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG-SVGSG--FDL---------PDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCccccCCCCceeeeecCC-CcCCC--CCC---------CCCCCCcCCCcccc
Confidence 668899999995 777777 34445 544 36799999999863
No 328
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=46.67 E-value=3.6e+02 Score=30.27 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=44.0
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCC-CCCCCChhhHHHHHHHHHhcccCch
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGP-DTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s-~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
++..++.....+.+..|+..|..+.-++...-..=.-.-.+-.++..|+. . +...++.|+.+|..++.+..
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~----~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSE----DEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccch----hhHHHHHHHHHHHHHHHhch
Confidence 44444433245677888887777666553322210112345567788877 5 77888999999998876543
No 329
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=46.64 E-value=57 Score=28.03 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=51.5
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
....+..|.++ .+.+|..++..|+.+..... ...+-..+++..+...|+.+ |+-+=-+|+..|..|+.
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~----DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE----DSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC----CchHHHHHHHHHHHHHH
Confidence 34456777777 78899999999999988765 12222346777777888888 88899999999988874
No 330
>PRK14707 hypothetical protein; Provisional
Probab=46.44 E-value=9.1e+02 Score=32.69 Aligned_cols=147 Identities=15% Similarity=-0.017 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHH-HhcccCchhHHHHhcccCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHH
Q 048793 431 LPNLQVNAVTTI-LNLSILEANKTRIMETEGALNGVIEVLRS-GATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGL 508 (683)
Q Consensus 431 d~~~qe~A~~aL-~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~-~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~L 508 (683)
+..+...|+..| ..|..+.+-+..+ .. -.+...+.-|++ ..+...+..|..+-..|..+++-+..+.. .|+-..|
T Consensus 303 d~~vc~~Aa~~la~rl~~d~~l~~~~-~~-~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q~~a~~l 379 (2710)
T PRK14707 303 DLPVCAEAAIALAERLADDPELCKAL-NA-RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-QGVSSVL 379 (2710)
T ss_pred CchHHHHHHHHHHHHHhccHhhhhcc-ch-HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-hHHHHHH
Confidence 555555444444 3455554444333 32 345555555554 22455566666666688888888877765 4544444
Q ss_pred HHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhcc--CchhHHHHHHHHHH-cCCcHHHHHHc
Q 048793 509 MDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDV--LPEESVTILEAVVK-RGGLTAIVAAY 580 (683)
Q Consensus 509 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~--~~~~~~~aL~~L~~-l~~~~e~~~~~ 580 (683)
-.+-+-++..+...|+.+|..=...+..-....+.-.|.-+++-|+. +...+..+...|+- ++...+...+.
T Consensus 380 NalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~ 454 (2710)
T PRK14707 380 NALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKAL 454 (2710)
T ss_pred hhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhc
Confidence 44444455667777777776533333344444455556666666663 33345555555543 44445555444
No 331
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=46.14 E-value=8.8 Score=33.49 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCCCCCcccccccccCCCCceec--CCccccchhhHH
Q 048793 270 DANVPADFRCPISLELMRNPVVV--ATGQTYDRQSIS 304 (683)
Q Consensus 270 ~~~~p~~f~CPis~~~m~dPv~~--~~g~ty~r~~I~ 304 (683)
.+.|.++-.|++|++.+.+++++ ||||.|-..|+.
T Consensus 72 ~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 72 SVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred eEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 35677888899999998877754 999999877764
No 332
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=44.05 E-value=1.5e+02 Score=29.99 Aligned_cols=133 Identities=15% Similarity=0.093 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC----C-hhHHHHHHHHHHHhcCCcc--hhHHHHhcCchHHHH
Q 048793 478 KGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG----P-TSSKRDALVAILNLAGDRE--TVGRLVERGIVEIVA 550 (683)
Q Consensus 478 ~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~----~-~~~~~~A~~aL~nLs~~~~--n~~~iv~aG~V~~Lv 550 (683)
.-+|...|.-+++.++.|..+.. +..--.|...|... . .-.+-.++.++..|..+++ -...+....+||.++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 35677788888888888888876 55333333444322 2 2356778999999988754 455667789999999
Q ss_pred HHhccCchh-HHHHHHHHHHcCCcHHHHHHc-------Cch----HHHHH-HHhcCChHHHHHHHHHHHHHHhc
Q 048793 551 EAMDVLPEE-SVTILEAVVKRGGLTAIVAAY-------NTI----KKLCI-LLREGSDTSRESAAATLVTICRK 611 (683)
Q Consensus 551 ~lL~~~~~~-~~~aL~~L~~l~~~~e~~~~~-------g~v----~~Lv~-lL~~~s~~~ke~A~~aL~~L~~~ 611 (683)
+++..+.+. ..-|+-++-.+-++..+.+-+ -++ ..++. +...++.+.-.++..+-..||..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 999865544 222333333333444333221 112 22222 23457777788888887777763
No 333
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=43.97 E-value=1.5e+02 Score=35.47 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=99.3
Q ss_pred HHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHH--HHHHHHhcC
Q 048793 395 ELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALN--GVIEVLRSG 472 (683)
Q Consensus 395 ~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~--~Lv~lL~~~ 472 (683)
.|.+.+..++++.+.+.+.|++..+...+... ...+.+..++..+.|++...+++...... ..+. .+-.++..-
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f---~~~~~~~~il~~l~n~~~~~~~~~~~~~~-~~~~~~~f~~~~~~w 569 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF---DNEELHRKILGLLGNLAEVLELRELLMIF-EFIDFSVFKVLLNKW 569 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHhhc
Confidence 78888999999999999999999999999875 15678999999999999776554443322 2222 222233333
Q ss_pred CCHHHHHHHHHHHHHhhcCcchh------------------------hHHhhhcccHHH-HHHhhcCC-ChhHHHHHHHH
Q 048793 473 ATWEAKGNAAATIFSLSGVHAHR------------------------KTLGRKTRVVKG-LMDLVKGG-PTSSKRDALVA 526 (683)
Q Consensus 473 ~~~~~~~~Aa~~L~~Ls~~~~~~------------------------~~i~~~~G~i~~-Lv~lL~~~-~~~~~~~A~~a 526 (683)
.+.+.--+|+.+|..+....+.. ..... ..-+.+ +-.++... .+....-|+++
T Consensus 570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~-~~~f~~~~~~il~~s~~~g~~lWal~t 648 (699)
T KOG3665|consen 570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVIN-DRSFFPRILRILRLSKSDGSQLWALWT 648 (699)
T ss_pred chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehh-hhhcchhHHHHhcccCCCchHHHHHHH
Confidence 23366677888887776542210 00011 112333 44444433 34566778888
Q ss_pred HHHhcCC-cchhHHHHhcCchHHHHHHhc
Q 048793 527 ILNLAGD-RETVGRLVERGIVEIVAEAMD 554 (683)
Q Consensus 527 L~nLs~~-~~n~~~iv~aG~V~~Lv~lL~ 554 (683)
+.++... ++++..+.+.|+++.+.+.-.
T Consensus 649 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 649 IKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 8887664 557777777888777766543
No 334
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=43.86 E-value=16 Score=27.99 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=20.1
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcCC-CCCCCCCCc
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGH-NTCPKTGQT 320 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~-~~cP~~~~~ 320 (683)
+|..||+|+.--++-+.-. |.-+ +. -.||+|++.
T Consensus 3 ~Wi~CP~CgnKTR~kir~D---T~Lk---------NfPlyCpKCK~E 37 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIRED---TVLK---------NFPLYCPKCKQE 37 (55)
T ss_pred eEEECCCCCCccceeeecC---ceec---------cccccCCCCCce
Confidence 5789999985544433221 1111 23 379999875
No 335
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.86 E-value=14 Score=39.24 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=33.7
Q ss_pred ccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccC
Q 048793 277 FRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 277 f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
-.|=||+.=-+|-+++||-|. .|..|- +-+.-.+..||.||+++.
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca-~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCA-KSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHH-HHHHHhhcCCCccccchH
Confidence 469999999999999999997 455553 333323567999999864
No 336
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=43.74 E-value=4.1e+02 Score=32.26 Aligned_cols=146 Identities=11% Similarity=0.042 Sum_probs=85.0
Q ss_pred cccHHHHHHhh-cCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHH
Q 048793 502 TRVVKGLMDLV-KGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAA 579 (683)
Q Consensus 502 ~G~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~ 579 (683)
.|.+..++... .+.+..+...|+..|..|+..-.--.+=..-++.+.+++.+.+. ....+.++.++...+. ....
T Consensus 293 ~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l 369 (815)
T KOG1820|consen 293 TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---STPL 369 (815)
T ss_pred chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccH
Confidence 34455555543 44566777888888888876432222222346778888888754 3445555555544332 1111
Q ss_pred cCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCC-chHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793 580 YNTIKKLCILLREGSDTSRESAAATLVTICRKGG-SEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652 (683)
Q Consensus 580 ~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~-~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l 652 (683)
....+.+...+.+++|..+..+...|-......+ .......+ .++++.++....+....+|..|...+-.+
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV--KTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 1235667777888999998887666655444333 11111112 46778888888888888887776655444
No 337
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=42.85 E-value=12 Score=38.83 Aligned_cols=26 Identities=12% Similarity=0.501 Sum_probs=18.8
Q ss_pred cccccccccCCC--Cc-eecCCccccchh
Q 048793 276 DFRCPISLELMR--NP-VVVATGQTYDRQ 301 (683)
Q Consensus 276 ~f~CPis~~~m~--dP-v~~~~g~ty~r~ 301 (683)
.|.||+|++.|. +. ..-++||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 389999999885 22 334778888774
No 338
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.65 E-value=2.7e+02 Score=31.45 Aligned_cols=150 Identities=15% Similarity=0.023 Sum_probs=85.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT 453 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~ 453 (683)
..+.....++ +...+..|++.|.+.+...+.-..-... -.+..++.=|.++. +.+++-.|+.+|.-+...-.+..
T Consensus 261 ~~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~---~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 261 LSLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDL---NEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHhhhhcc
Confidence 3344445555 6788889999999998875533222222 23334444343331 67888888888877654333322
Q ss_pred HHhcccCcHH---HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhh---cccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 454 RIMETEGALN---GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRK---TRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 454 ~I~~~~G~I~---~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~---~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
. .. +.++ .+..+..+. +++.|.+|..++..|+.....+..++-. .+...+|+-.|.+.++.+ ..|+...
T Consensus 336 l--~~-~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~ 410 (533)
T KOG2032|consen 336 L--ES-YLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSE 410 (533)
T ss_pred h--hh-hchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHH
Confidence 1 11 3333 344455566 6899999998888888654433333221 223344555556666544 3466666
Q ss_pred HHhcCC
Q 048793 528 LNLAGD 533 (683)
Q Consensus 528 ~nLs~~ 533 (683)
...|.-
T Consensus 411 ~~~c~p 416 (533)
T KOG2032|consen 411 LRTCYP 416 (533)
T ss_pred HHhcCc
Confidence 666654
No 339
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.74 E-value=5.9e+02 Score=30.87 Aligned_cols=210 Identities=15% Similarity=0.141 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHH-
Q 048793 432 PNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMD- 510 (683)
Q Consensus 432 ~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~- 510 (683)
+.++..++.-|..+.....-+..+... +++......|++. +.-+.-+|...+..||... ....+|-|.+
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~~~~e-kvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcevy--------~e~il~dL~e~ 810 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATLIQGE-KVLAIALDTLKDE-DSYVYLNAIRGVVSLCEVY--------PEDILPDLSEE 810 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhhhhHH-HHHHHHHHHhccc-CceeeHHHHHHHHHHHHhc--------chhhHHHHHHH
Confidence 346666777777776655555566665 7888888888876 5666677777666666541 1344555555
Q ss_pred hhcCCC---hhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhccCchh--HHHHHHHHHHcCCcHHHHH--HcC-
Q 048793 511 LVKGGP---TSSKRDALVAILNLAGDRE-TVGRLVERGIVEIVAEAMDVLPEE--SVTILEAVVKRGGLTAIVA--AYN- 581 (683)
Q Consensus 511 lL~~~~---~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~~~~--~~~aL~~L~~l~~~~e~~~--~~g- 581 (683)
..+..+ ++.+-..-.|+.++....+ -...-. +-.+..-+..+. +++. ...++++|..+|..-.+.. ..+
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvr-epd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVR-EPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcC-CchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 332211 1222222245555433211 111110 111122222222 2333 6677777777653322111 111
Q ss_pred chHHHHHHHh-cCChHHHHHHHHHHHHHHhcCCchHHHHHHhc--CCcHHHHHHHh-hcCCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLR-EGSDTSRESAAATLVTICRKGGSEMVADIAAV--PGIERVIWELM-ESGTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~-~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~--~G~~~~L~~Ll-~~~~~~~k~kA~~lL~~l~~ 654 (683)
.+..++.+.+ .++.-.|+.|+..+..+-.+-+.. ...+... -.....+.... .+..+.+|-.|...+.-+..
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED-LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 1233444443 478889999999887776654432 2222211 12233333332 23456677777666655543
No 340
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.47 E-value=1.4e+02 Score=31.50 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=68.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcC
Q 048793 466 IEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERG 544 (683)
Q Consensus 466 v~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG 544 (683)
+..|.+. +.+.+..+...|..|+..+. ...... ...|..+++=+++....+.+.|+.++..|-..-.+.-.-.-.+
T Consensus 94 l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 94 LKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443 45555555555555554332 111111 3467788888888777788999999988866544332221122
Q ss_pred chHHHHHHhccC----chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHH
Q 048793 545 IVEIVAEAMDVL----PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAAT 604 (683)
Q Consensus 545 ~V~~Lv~lL~~~----~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~a 604 (683)
.+..|..--..+ .+.++.||..+.+...-. ..++.|...+.+..++++..++..
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhcc
Confidence 222222211111 123555555555533211 124555566777888888777753
No 341
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=40.12 E-value=1.5e+02 Score=24.42 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=47.3
Q ss_pred hhhhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhc-ccchHHHH
Q 048793 50 LLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCY-NGSKMWLL 114 (683)
Q Consensus 50 ~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~-~~sklyl~ 114 (683)
..+++-..|++.+..+.++++.|...++ +++.-..-+......-+++..|+..-. .|.+-|-.
T Consensus 3 ~L~~~r~~Lv~~l~~~~~ild~L~~~~v--lt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~ 66 (85)
T PF00619_consen 3 LLRKNRQELVEDLDDLDDILDHLLSRGV--LTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDI 66 (85)
T ss_dssp HHHHTHHHHHHHSSHHHHHHHHHHHTTS--SSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHCCC--CCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHH
Confidence 3468888999999989999999998886 676656666665556778888888744 66655433
No 342
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=40.05 E-value=28 Score=31.81 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=38.3
Q ss_pred CcccccccccCCCCceec----CCccccchhhHHHHHhc--CCCCCCCCCCccCCC
Q 048793 275 ADFRCPISLELMRNPVVV----ATGQTYDRQSISLWIES--GHNTCPKTGQTLAHT 324 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~----~~g~ty~r~~I~~w~~~--g~~~cP~~~~~l~~~ 324 (683)
.=+.|-||.|.-.|.-.+ .||...|-.|-..-|.. -++.||+|+..+..+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 446799999999998876 57888888887774442 367999999877544
No 343
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.76 E-value=6.4 Score=40.51 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=29.3
Q ss_pred cccccccccCCCCceecCCcccc-chhhHHHHHhcCC--CCCCCCCCc
Q 048793 276 DFRCPISLELMRNPVVVATGQTY-DRQSISLWIESGH--NTCPKTGQT 320 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty-~r~~I~~w~~~g~--~~cP~~~~~ 320 (683)
+..|-||++.-+|=|.++|||.. |-.| |. ..||+||+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHH
Confidence 78999999999999999999964 2212 32 368888764
No 344
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=4.2e+02 Score=30.54 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=61.6
Q ss_pred CcHHHHHHh-hCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 414 GAIALLARH-LGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 414 G~Ip~Lv~l-L~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
|+|..|+.. .+.. +.+++..|+.+|.-++.++. ..+...|++|....+.-+|...+-+|.--|...
T Consensus 551 ~vv~~lLh~avsD~----nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 551 GVVSTLLHYAVSDG----NDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred hhHhhhheeecccC----chHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 444444444 3333 77888888888877765432 456667788876667888877777777555543
Q ss_pred chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
..+. ++..|-.|..+.+.-++..|+-++.-+..
T Consensus 618 G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 618 GDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred ccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 3222 33444455566666677777777776644
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.63 E-value=1.4e+02 Score=29.78 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhcccchHHH------H--HhhHHHHHHHHHHHHHHHHHHhcCCC
Q 048793 92 YIVLQRMKTLIEDCYNGSKMWL------L--MQIETAANNFHELTIDLSTLLDIMPL 140 (683)
Q Consensus 92 ~~~l~~a~~ll~~c~~~sklyl------~--~~~~~~~~~~~~~~~~l~~~l~~~p~ 140 (683)
...|.+|...+.+|+.+..||- . .....-+.+|++...+.-+++...|-
T Consensus 144 ~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 144 LIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 4568889999999998887754 2 22333446788888888888888775
No 346
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=39.35 E-value=2.7e+02 Score=32.57 Aligned_cols=133 Identities=19% Similarity=0.141 Sum_probs=81.6
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC--c
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL--E 449 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~--~ 449 (683)
.+..++..+. . ++..+.-+++.|.|+-.+ +.+++.+... ...+...+.......+..++..-.+..+|++.- .
T Consensus 590 ~~~~li~~~~-~-~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~ 664 (745)
T KOG0301|consen 590 LVGTLIPILN-A-DPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQ 664 (745)
T ss_pred HHHhhhcccc-c-chhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHh
Confidence 3444555554 3 678888999999998876 5688887765 223332222111112456776666666777642 2
Q ss_pred hhHHHHhcccCcHHHHHHHHh----cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC
Q 048793 450 ANKTRIMETEGALNGVIEVLR----SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG 515 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~----~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~ 515 (683)
++-+ . |+.+.+...+. .-.+.++.-.+.-+|.+|+..+....++.. .--+..+++-+++.
T Consensus 665 ~~~~----~-~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~-~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 665 DNEQ----L-EGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAK-NRSVDSIAKKLKEA 728 (745)
T ss_pred cccc----c-chHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHH-hcCHHHHHHHHHHh
Confidence 2211 1 33444444333 323456777788889999999989888887 45688888877653
No 347
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.24 E-value=7.3e+02 Score=29.49 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=61.8
Q ss_pred HHHHHHhccCch----hHHHHHHHHHH-cCCcHHHHHHc-Cc----hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchH
Q 048793 547 EIVAEAMDVLPE----ESVTILEAVVK-RGGLTAIVAAY-NT----IKKLCILLREGSDTSRESAAATLVTICRKGGSEM 616 (683)
Q Consensus 547 ~~Lv~lL~~~~~----~~~~aL~~L~~-l~~~~e~~~~~-g~----v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~ 616 (683)
..++++|.++.- ...++++.+.. ....++..... .. ++.|+..+...+|.+|-+|..++..+|..+....
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 445667764321 13344444433 22333333322 12 3444455667899999999999999997543211
Q ss_pred HHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793 617 VADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652 (683)
Q Consensus 617 ~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l 652 (683)
.+ ...+....+.-+++.+..+|++|..++.-|
T Consensus 382 ~~----r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 382 GR----RHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred ch----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 11 124566667778899999999999887654
No 348
>PF14353 CpXC: CpXC protein
Probab=38.84 E-value=18 Score=32.93 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=30.1
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHhcC--CCCCCCCCCccC
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESG--HNTCPKTGQTLA 322 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g--~~~cP~~~~~l~ 322 (683)
+.+||-|+..+.-.+-..=+-+.+....++-++.. ..+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 35799999888776644333335555566656421 358999998753
No 349
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=38.70 E-value=1.2e+02 Score=25.29 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=41.3
Q ss_pred hhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhc
Q 048793 52 QRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCY 106 (683)
Q Consensus 52 k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~ 106 (683)
++|=..|+.++.-+.|+++.|...++ +.+........-..--++|+.|+....
T Consensus 4 ~~~r~~Li~~v~~v~~ilD~L~~~~V--it~e~~~~I~a~~T~~~kar~Lld~l~ 56 (82)
T cd08330 4 DQHREALIARVTNVDPILDKLHGKKV--ITQEQYSEVRAEKTNQEKMRKLFSFVR 56 (82)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCCC--CCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 56777999999999999999998775 666656666655555678888887765
No 350
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=38.48 E-value=5.9e+02 Score=28.22 Aligned_cols=87 Identities=9% Similarity=0.079 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhcc-cCchhHHHHhcccCcH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASR-LPNLQVNAVTTILNLS-ILEANKTRIMETEGAL 462 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~-d~~~qe~A~~aL~nLs-~~~~~k~~I~~~~G~I 462 (683)
+.++..+|+++|+++..++...|....+......+++++....... ...++..=+..|+-|. ...+.|.++...-+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 5677889999999999999989999888877777777654331100 1223334445555443 2345555554333889
Q ss_pred HHHHHHHhc
Q 048793 463 NGVIEVLRS 471 (683)
Q Consensus 463 ~~Lv~lL~~ 471 (683)
+.+.+.|..
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999999874
No 351
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=38.40 E-value=3.7e+02 Score=33.21 Aligned_cols=142 Identities=15% Similarity=0.221 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhcccchHH--HHHhhHHHHHHHHHHHHHHHHHHhcCCCcccc---chhhHHHHHHHHHHHHh---hh
Q 048793 92 YIVLQRMKTLIEDCYNGSKMW--LLMQIETAANNFHELTIDLSTLLDIMPLQELR---LSQDVEDVVVLIKKQCS---KR 163 (683)
Q Consensus 92 ~~~l~~a~~ll~~c~~~skly--l~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~---~s~ev~e~v~~~~~q~~---~~ 163 (683)
...|+..|.+++. |+. -++||+..+.+..- + ..-+||+.+|.+. + ||.+.+|||..++.++. |+
T Consensus 1014 K~QMDaIKqmIek-----Kv~L~~L~qCqdALeKqnI-a-~AL~ALn~IPSdK-Ems~Is~eLReQIq~~KQ~LesLQRA 1085 (1439)
T PF12252_consen 1014 KAQMDAIKQMIEK-----KVVLQALTQCQDALEKQNI-A-GALQALNNIPSDK-EMSKISSELREQIQSVKQDLESLQRA 1085 (1439)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhH-H-HHHHHHhcCCchh-hhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666554 222 35555555544332 2 3346788888642 2 89999999999987732 33
Q ss_pred hhccCCCchhHHHHHHHHHHHh-------hhhhcCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhhcc--cc-cH
Q 048793 164 TKGALVDSKDDKLRLQVLTTLD-------QIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTD--QK-SK 233 (683)
Q Consensus 164 ~~~~~~d~~~~~l~~~v~~~l~-------~~~~~~~~d~~~l~~~~~~l~~~~~~~~~~E~~~l~~e~~~~~~--~~-~~ 233 (683)
.-..-+ .+.+..+..-..++. .+++...++.+..++.... -..|++|+.-|++|...... ++ +.
T Consensus 1086 V~TPVv-td~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~-----lnnlqqElklLRnEK~Rmh~~~dkVDF 1159 (1439)
T PF12252_consen 1086 VVTPVV-TDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIAN-----LNNLQQELKLLRNEKIRMHSGTDKVDF 1159 (1439)
T ss_pred hccccc-ccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH-----HHHHHHHHHHHHhHHHhhccCCCcccH
Confidence 111112 223333332222332 2233333344444443333 34678899999888766433 22 55
Q ss_pred HHHHHHHHHHHhhh
Q 048793 234 HFAAALIGLVRYTK 247 (683)
Q Consensus 234 ~~~~~li~l~~~~~ 247 (683)
+.|+.|-..+.-++
T Consensus 1160 SDIEkLE~qLq~~~ 1173 (1439)
T PF12252_consen 1160 SDIEKLEKQLQVIH 1173 (1439)
T ss_pred HHHHHHHHHHHHhh
Confidence 56666544444443
No 352
>PLN02189 cellulose synthase
Probab=37.74 E-value=24 Score=43.06 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=35.0
Q ss_pred ccccccccC-----CCCceec--CCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 277 FRCPISLEL-----MRNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 277 f~CPis~~~-----m~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
-.|.||++- +-+|-+. .||--.||.|-+-=.++|+..||.|++++.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 389999864 3455433 467779999986667789999999998876
No 353
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=35 Score=37.05 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=26.5
Q ss_pred CcccccccccCC---CCceecCCccccchhhHHHHHh
Q 048793 275 ADFRCPISLELM---RNPVVVATGQTYDRQSISLWIE 308 (683)
Q Consensus 275 ~~f~CPis~~~m---~dPv~~~~g~ty~r~~I~~w~~ 308 (683)
.-|.|-||++-- .+-+.+||+|.||++|...++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 457799997543 2445679999999999999985
No 354
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.55 E-value=7.4e+02 Score=30.13 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHH-H
Q 048793 474 TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAE-A 552 (683)
Q Consensus 474 ~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~-l 552 (683)
-+..|..+...|..+....+.+..+.. .+++....++|++.++-+--+|+..+..||.- -...++|-|.+ .
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y 811 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY 811 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence 366888899999999887777777776 78999999999988877777777777777652 22334555555 3
Q ss_pred hccC----chh---HHHHHHHHHHcCCcHHHHHHcC--chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhc
Q 048793 553 MDVL----PEE---SVTILEAVVKRGGLTAIVAAYN--TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAV 623 (683)
Q Consensus 553 L~~~----~~~---~~~aL~~L~~l~~~~e~~~~~g--~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~ 623 (683)
.+.. .+. +.+|+..+..--| +.....- -+...++.++....+-|-.+.+.|.++|.-..-. +...+
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~G--el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~-vsd~~-- 886 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALG--ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ-VSDFF-- 886 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-hhHHH--
Confidence 3211 111 4444443332111 1111111 1122223333233334777888888888633211 11111
Q ss_pred CCcHHHHHHH-hhcCCHHHHHHHHHHHHHHHh
Q 048793 624 PGIERVIWEL-MESGTARARRKAAALLRILRR 654 (683)
Q Consensus 624 ~G~~~~L~~L-l~~~~~~~k~kA~~lL~~l~~ 654 (683)
..+...++.+ ..+|..-+||.|.-++..+-.
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 1234444444 335677888888888776644
No 355
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=36.37 E-value=28 Score=36.14 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=30.1
Q ss_pred cccccccccC----CCCceecCCccccchhhHHHHHhcCCCCCCCCCC
Q 048793 276 DFRCPISLEL----MRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQ 319 (683)
Q Consensus 276 ~f~CPis~~~----m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~ 319 (683)
++-|||+.+- +.+|...+|||+--..|.++..-.| .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3459999654 4677788999975444444444455 89999976
No 356
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=36.16 E-value=1.4e+02 Score=36.16 Aligned_cols=137 Identities=12% Similarity=0.035 Sum_probs=86.8
Q ss_pred hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
...+|.|+...... +...+.+=+.+|.++-.+-.....+=..+..+|.|++-|.-. |..+|..+..+|.-+....
T Consensus 866 ~~ivP~l~~~~~t~----~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 866 CDIVPILVSKFETA----PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HhhHHHHHHHhccC----CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhc
Confidence 36889999888754 445566666666665544333222223345678888888766 6888888888887665433
Q ss_pred chhhHHhhhcccHHHHHHhhcCCC---hhHHHHHHHHHHHhcC-CcchhHHHHhcCchHHHHHHhcc
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGGP---TSSKRDALVAILNLAG-DRETVGRLVERGIVEIVAEAMDV 555 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~V~~Lv~lL~~ 555 (683)
+.-..--. .-.||.+..+=.+.+ ..++..|+..|..|.. .+.+.-.--+-.++.+|+..|.+
T Consensus 941 ~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD 1006 (1030)
T KOG1967|consen 941 ETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD 1006 (1030)
T ss_pred cccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc
Confidence 32211111 346777777755544 3477999999999988 45444444455667778888874
No 357
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=36.08 E-value=20 Score=35.86 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=35.7
Q ss_pred Ccccccccc-cCCCCcee---c-C-CccccchhhHHHHHhcCCCCCC--CCCCccC
Q 048793 275 ADFRCPISL-ELMRNPVV---V-A-TGQTYDRQSISLWIESGHNTCP--KTGQTLA 322 (683)
Q Consensus 275 ~~f~CPis~-~~m~dPv~---~-~-~g~ty~r~~I~~w~~~g~~~cP--~~~~~l~ 322 (683)
.+-.||+|. +.+-+|-+ + | |=|..|-+|+-+-|..|-..|| -|++.|.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 445799996 56666642 2 4 8899999999999999988999 5554443
No 358
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=36.05 E-value=3.6e+02 Score=25.02 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=52.5
Q ss_pred chHHHHHHHhc-CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHH-HHHHhhc---CCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLRE-GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERV-IWELMES---GTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~-~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~-L~~Ll~~---~~~~~k~kA~~lL~~l~~ 654 (683)
++.+|-+.|.. .++.+...|..+|-.+..++|.....+ +...+++.- |+.++.. ....+|.+...+++..+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~e-iask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVL-VAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHH-HHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45667777764 478888999999888888888765544 455678876 8888763 235899997777777665
No 359
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=35.59 E-value=20 Score=33.63 Aligned_cols=39 Identities=26% Similarity=0.583 Sum_probs=22.8
Q ss_pred CCcccccccccCCCCceecCCccccchhhHHHHHh-cCCCCCCCCCCccCCC
Q 048793 274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWIE-SGHNTCPKTGQTLAHT 324 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~-~g~~~cP~~~~~l~~~ 324 (683)
...|.||-|+. +|.-.-.....+ .|..+||.|+.++...
T Consensus 97 ~~~Y~Cp~C~~------------~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPNCQS------------KYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcCCCC------------EeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 46789996553 443222222211 3457899999987543
No 360
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=35.50 E-value=1.6e+02 Score=25.71 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=48.4
Q ss_pred hHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc
Q 048793 496 KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD 554 (683)
Q Consensus 496 ~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~ 554 (683)
..++...+.+..|++.++..+......++..|..|..++.....+.+-|++..|-++-.
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 33444467888888888887777889999999999999999999999999999766654
No 361
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=35.31 E-value=2.2e+02 Score=32.84 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=72.6
Q ss_pred hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
.|.+-.+++.+.+. |..++..++.+|.-++..-..-....-. |.++.|.+-+-.. .+.+|..|..+|..+-...
T Consensus 90 ~~~~~h~lRg~esk----dk~VR~r~lqila~~~d~v~eIDe~l~N-~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 90 AGTFYHLLRGTESK----DKKVRKRSLQILALLSDVVREIDEVLAN-GLLEKLSERLFDR-EKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHHHHHHhcccCc----chhHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcc
Confidence 36677777777887 9999999999888776432222233333 6666666655444 4788999999998776444
Q ss_pred chhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHHHHhcCCcchhHHHH
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAILNLAGDRETVGRLV 541 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~n~~~iv 541 (683)
.|-+.. .+..|+.+++++. .+++.. ||.|++.++....-++
T Consensus 164 ~neen~-----~~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~Il 205 (885)
T COG5218 164 LNEENR-----IVNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCIL 205 (885)
T ss_pred CChHHH-----HHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhHH
Confidence 333322 2336777777654 445553 5778877666554443
No 362
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=35.07 E-value=64 Score=29.13 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCcHHHHHHcCchHHHHHHH---hcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh-
Q 048793 560 SVTILEAVVKRGGLTAIVAAYNTIKKLCILL---REGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELME- 635 (683)
Q Consensus 560 ~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL---~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~- 635 (683)
....+.-|+..+-+..... .....|.+.| ...+.+..-+|+.+|..|+.+++...+..+......+..|..+.-
T Consensus 20 ~~~~l~eIa~~t~~~~~~~--~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNSKDCQ--EIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp -HHHHHHHHHHTTSCHHHH--HHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred CHHHHHHHHHHHhccccHH--HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 4445555555554432222 2356677777 456778889999999999999887666555433344444444322
Q ss_pred --cCC---HHHHHHHHHHHHHHHh
Q 048793 636 --SGT---ARARRKAAALLRILRR 654 (683)
Q Consensus 636 --~~~---~~~k~kA~~lL~~l~~ 654 (683)
.|. ..+|++|..++.+|..
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred CCCCccHHHHHHHHHHHHHHHhCC
Confidence 133 3599999999999865
No 363
>PLN02195 cellulose synthase A
Probab=34.93 E-value=31 Score=41.86 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=34.8
Q ss_pred ccccccc-----CCCCceec--CCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 278 RCPISLE-----LMRNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 278 ~CPis~~-----~m~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
.|-||++ .+-+|-+. .||--.||.|-+-=-++|+..||.|+.++.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5888876 45566544 677779999986666789999999998876
No 364
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=34.88 E-value=8.3e+02 Score=28.88 Aligned_cols=342 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred cccccCCCCceecCCc----cccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCCCCCCCcccc
Q 048793 280 PISLELMRNPVVVATG----QTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEK 355 (683)
Q Consensus 280 Pis~~~m~dPv~~~~g----~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~~~~~~~~~ 355 (683)
+...+-+.||..+... ..|.-.|.-...-.| .|+.. ..+.....+| +..+..+|++-+-..-+.+. .
T Consensus 165 ~~~~~s~~~P~~~~~s~~s~D~~~Lg~li~el~ng--~~~~~-~~~~~~~~ip----k~~~~~~~k~~~~~~~~r~n--~ 235 (690)
T KOG1243|consen 165 LYLIESFDDPEEIDPSEWSIDSWGLGCLIEELFNG--SLLTK-TDLSNTGKIP----KALIELYCKKLGATELKRPN--K 235 (690)
T ss_pred chhhhcccChhhcCccccchhhhhHHHHHHHHhCc--ccCcc-hhhhccCccc----hhHHHHHHHHhccccccccc--h
Q ss_pred cccccchhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhH
Q 048793 356 VNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435 (683)
Q Consensus 356 ~~~~~~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~q 435 (683)
..-....+..-+..+...-.++..|..- ......+=..-.+.|...-+.--+.++..-..|.|+..+..+ + .-
T Consensus 236 ~~~~~~~~~~~gff~n~fvd~~~fLeel-~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g----~--a~ 308 (690)
T KOG1243|consen 236 LRFILECRLLGGFFRNDFVDTLLFLEEL-RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFG----D--AA 308 (690)
T ss_pred hhHHHHHHhccccccchHHHHHHHHHhc-ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcc----c--cc
Q ss_pred HHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcC
Q 048793 436 VNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKG 514 (683)
Q Consensus 436 e~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~ 514 (683)
...+..++.+...-+... ... +.+|.|+++++.. +..+| ...|.++-..-+ --..+.. .-++|.+..-+.+
T Consensus 309 ~~~ltpl~k~~k~ld~~e--yq~-~i~p~l~kLF~~~-Dr~iR---~~LL~~i~~~i~~Lt~~~~~-d~I~phv~~G~~D 380 (690)
T KOG1243|consen 309 SDFLTPLFKLGKDLDEEE--YQV-RIIPVLLKLFKSP-DRQIR---LLLLQYIEKYIDHLTKQILN-DQIFPHVALGFLD 380 (690)
T ss_pred hhhhhHHHHhhhhccccc--ccc-chhhhHHHHhcCc-chHHH---HHHHHhHHHHhhhcCHHhhc-chhHHHHHhhccc
Q ss_pred CChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCc-hHHHHHHHhc
Q 048793 515 GPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNT-IKKLCILLRE 592 (683)
Q Consensus 515 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~-v~~Lv~lL~~ 592 (683)
.++..++..+..+.-|+..=.-+ .+.......+-.+-.+. .+...+.--.|..++..-.....-+. +.++.+-+++
T Consensus 381 Tn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkd 458 (690)
T KOG1243|consen 381 TNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKD 458 (690)
T ss_pred CCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcC
Q ss_pred CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793 593 GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652 (683)
Q Consensus 593 ~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l 652 (683)
.-...|..++.+|+..+..-....+.. .++|.+.-+..+...-++..|-..++.+
T Consensus 459 pf~paR~a~v~~l~at~~~~~~~~va~-----kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 459 PFVPARKAGVLALAATQEYFDQSEVAN-----KILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred CCCCchhhhhHHHhhcccccchhhhhh-----hccccccccccCcccchhhHHHHHHHHH
No 365
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.79 E-value=9.6e+02 Score=29.59 Aligned_cols=232 Identities=14% Similarity=0.148 Sum_probs=119.9
Q ss_pred hCcHHHHHHhhCCCCC----CCChhhHHHHHHHHHhccc----CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHH
Q 048793 413 AGAIALLARHLGPDTA----SRLPNLQVNAVTTILNLSI----LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAAT 484 (683)
Q Consensus 413 ~G~Ip~Lv~lL~s~~~----~~d~~~qe~A~~aL~nLs~----~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~ 484 (683)
.|.++.++..|.+... ..++.-.+-|+.++.+|+. ....+.. ++. =.+..+.-.+++. ..-.|..||++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~-flv~hVfP~f~s~-~g~Lrarac~v 485 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEY-FLVNHVFPEFQSP-YGYLRARACWV 485 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHH-HHHHHhhHhhcCc-hhHHHHHHHHH
Confidence 4778888888873211 1255666778888888862 1222222 222 2344444455665 46788999999
Q ss_pred HHHhhcCc-chhhHHhhhcccHHHHHHhhcC-CChhHHHHHHHHHHHhcCCcchhHHHHhc---CchHHHHHHhcc-Cch
Q 048793 485 IFSLSGVH-AHRKTLGRKTRVVKGLMDLVKG-GPTSSKRDALVAILNLAGDRETVGRLVER---GIVEIVAEAMDV-LPE 558 (683)
Q Consensus 485 L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~a---G~V~~Lv~lL~~-~~~ 558 (683)
+...+..+ .+.... ..++....+.|.+ ..-.++-.|+-||..+-.+.+....-+++ +.+..|+.+.++ +.+
T Consensus 486 l~~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End 562 (1010)
T KOG1991|consen 486 LSQFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND 562 (1010)
T ss_pred HHHHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence 99998543 222222 3467777777774 44568889999999887765543333333 344444555443 223
Q ss_pred hHHHHHHHHHH-cCCc--HHHHHHcC-chHHHHHHHhc------CChHHHHHHHHHHHHHHh-----cCCchHHHHHHhc
Q 048793 559 ESVTILEAVVK-RGGL--TAIVAAYN-TIKKLCILLRE------GSDTSRESAAATLVTICR-----KGGSEMVADIAAV 623 (683)
Q Consensus 559 ~~~~aL~~L~~-l~~~--~e~~~~~g-~v~~Lv~lL~~------~s~~~ke~A~~aL~~L~~-----~~~~~~~~~~~~~ 623 (683)
....++..+.. .+.. +-+..-.+ -+..+++++.+ ++....-.|.++|..+.+ .+..+...++ +
T Consensus 563 ~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l--e 640 (1010)
T KOG1991|consen 563 DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL--E 640 (1010)
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH--H
Confidence 33333333321 1110 00000011 13456666663 223334455555555432 1111122221 2
Q ss_pred CCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793 624 PGIERVIWELMESGTARARRKAAALLRIL 652 (683)
Q Consensus 624 ~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l 652 (683)
.-+.+.+..++++.-.++-+.+..++..+
T Consensus 641 ~~~l~vi~~iL~~~i~dfyeE~~ei~~~~ 669 (1010)
T KOG1991|consen 641 PIVLPVIGFILKNDITDFYEELLEIVSSL 669 (1010)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 23445555556666556666655555443
No 366
>PF06497 DUF1098: Protein of unknown function (DUF1098); InterPro: IPR009477 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf102; it is a family of uncharacterised viral proteins.
Probab=34.17 E-value=1.8e+02 Score=25.23 Aligned_cols=53 Identities=17% Similarity=0.051 Sum_probs=38.6
Q ss_pred CCCC-ChHHHHHHHHHHHHHHhccC-Cccchhhhc-HHHHHHHHhhhhHHHHHHHhc
Q 048793 22 SPTL-SDLKLVESLLILSQEVSSMK-PLQFLLQRS-CLSIIRKVKLLSLFFEELLAN 75 (683)
Q Consensus 22 ~~~~-~~~~l~~~l~~l~~~i~~~~-~~~~~~k~~-~~~l~r~i~lL~~lleEl~~~ 75 (683)
+|.. .+.+|+++|... +.++++- ...-.+|++ +..|+.+-..++-+|+-|.+.
T Consensus 14 ~~~~~~~~~lL~~Ln~~-~tva~~IlnD~S~~K~~sl~~Ls~~S~~aK~il~~Ie~~ 69 (95)
T PF06497_consen 14 SPDDINAEDLLQSLNEN-QTVARLILNDTSENKRNSLKRLSPQSAGAKKILESIEDD 69 (95)
T ss_pred CCCCCCHHHHHHHHHhc-ccHHHHHHcCCCHhHHHHHHHHhHhhHHHHHHHHHHhcC
Confidence 3344 889999999997 6666643 333355554 477888889999999999874
No 367
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.89 E-value=3.9e+02 Score=30.91 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=73.8
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..+.+..+++-+.+. +..++...+..|+.+...-. --....-.|.+..|..-+-.. .+.++..|+.+|..+-..
T Consensus 89 V~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DR----E~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 89 VAGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDR----EKAVRREAVKVLCYYQEM 162 (885)
T ss_pred HHHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHhc
Confidence 345666777777777 88899988888887754221 122344467888777666555 678999999999877543
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH 494 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~ 494 (683)
..|-+. .....|+.++++..+.++|.. +|.|++.+...
T Consensus 163 ~~neen-----~~~n~l~~~vqnDPS~EVRr~---allni~vdnsT 200 (885)
T COG5218 163 ELNEEN-----RIVNLLKDIVQNDPSDEVRRL---ALLNISVDNST 200 (885)
T ss_pred cCChHH-----HHHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCc
Confidence 333221 123357788888777888865 46677665543
No 368
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=33.68 E-value=1.7e+02 Score=31.80 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=64.9
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHH-HHHHHHhcccC
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVN-AVTTILNLSIL 448 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~-A~~aL~nLs~~ 448 (683)
.+.|..+++-|.++.+...|+.++-.|..-+.+. .-|..+..+|.+..+++.+.... +..+... ++.++.-++.+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~---~d~~~~l~~a~i~~~l~~d 95 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAP---DDDILALATAAILYVLSRD 95 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhcccc---chHHHHHHHHHHHHHHccC
Confidence 3457788888886546788889988888888754 58999999999999999985431 3323333 34444555555
Q ss_pred chhHHHHhcccCcHHHHHHHHh
Q 048793 449 EANKTRIMETEGALNGVIEVLR 470 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~ 470 (683)
..+-..+-.. +.+..++.++.
T Consensus 96 ~~~~~l~~~~-~~~~ll~~Ll~ 116 (361)
T PF07814_consen 96 GLNMHLLLDR-DSLRLLLKLLK 116 (361)
T ss_pred Ccchhhhhch-hHHHHHHHHhc
Confidence 4443333343 67777788887
No 369
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=33.10 E-value=24 Score=28.71 Aligned_cols=34 Identities=9% Similarity=0.260 Sum_probs=22.8
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcC
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG 310 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g 310 (683)
...+||+|.+.+..--+++. +.. |..|++|+.++
T Consensus 38 ~~~~~P~t~~~l~~~~l~pn-~~L-k~~I~~~~~~~ 71 (73)
T PF04564_consen 38 NGGTDPFTRQPLSESDLIPN-RAL-KSAIEEWCAEN 71 (73)
T ss_dssp TSSB-TTT-SB-SGGGSEE--HHH-HHHHHHHHHHC
T ss_pred CCCCCCCCCCcCCcccceEC-HHH-HHHHHHHHHHc
Confidence 57889999988876555664 434 89999999863
No 370
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=31.55 E-value=37 Score=32.94 Aligned_cols=37 Identities=16% Similarity=0.486 Sum_probs=27.8
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
-+.||.|+.++-|-+-- =-..+|-+|.. .||...+..
T Consensus 87 IYICPFTGKVF~DNt~~-----nPQDAIYDWvS----kCPeN~ER~ 123 (238)
T PF10915_consen 87 IYICPFTGKVFGDNTHP-----NPQDAIYDWVS----KCPENTERQ 123 (238)
T ss_pred EEEcCCcCccccCCCCC-----ChHHHHHHHHh----hCCccchhc
Confidence 47999999999996422 22689999987 488876543
No 371
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.49 E-value=17 Score=36.71 Aligned_cols=39 Identities=13% Similarity=0.359 Sum_probs=28.2
Q ss_pred CCce-ecCCccccchhhHHHHHhcCCC-CCCCCCCccCCCCCcch
Q 048793 287 RNPV-VVATGQTYDRQSISLWIESGHN-TCPKTGQTLAHTNLVTN 329 (683)
Q Consensus 287 ~dPv-~~~~g~ty~r~~I~~w~~~g~~-~cP~~~~~l~~~~l~pn 329 (683)
.||. ++.|+|.||-.|.. .-+. .||.|++++....+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k----~~~~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLK----ASSPDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcc----cCCccccccccceeeeeecccc
Confidence 5666 67999999986632 2233 89999999776666555
No 372
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=31.11 E-value=6.2e+02 Score=26.23 Aligned_cols=160 Identities=10% Similarity=0.018 Sum_probs=88.7
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc--------hhhHHhhhcccHHHHHHhhcCCC----hhHHHHHHHHH
Q 048793 460 GALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA--------HRKTLGRKTRVVKGLMDLVKGGP----TSSKRDALVAI 527 (683)
Q Consensus 460 G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~--------~~~~i~~~~G~i~~Lv~lL~~~~----~~~~~~A~~aL 527 (683)
|.-+.+++=|.+ ....+.+..+|..|....+ ++-.+.- .+.+|-++.-+.+++ ......++..|
T Consensus 64 Glq~Ll~KGL~S---s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~-la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 64 GLQPLLLKGLRS---SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLL-LALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred hHHHHHhCccCC---CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHH-HHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 444444444443 4566778888888876533 2333322 345666666666666 24556777888
Q ss_pred HHhcCCcchhHHHHhcCchHHHHHHhccC--c---hhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHH
Q 048793 528 LNLAGDRETVGRLVERGIVEIVAEAMDVL--P---EESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAA 602 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~--~---~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~ 602 (683)
..+|...+ .+.+..++.....+ . +-...++..|...-. ++ .....+..|..+|.++.+..|....
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~--~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD--HEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch--hHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 88884321 11222223322211 1 113344444433111 01 1112356688888999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC
Q 048793 603 ATLVTICRKGGSEMVADIAAVPGIERVIWELMESG 637 (683)
Q Consensus 603 ~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~ 637 (683)
.+|..+-.+-+-. .. ....++.+|..+++..
T Consensus 210 ~iL~~ll~~~d~~--~~--~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 210 QILKVLLPHVDMR--SP--HGADLISPLLRLLQTD 240 (262)
T ss_pred HHHHHHhccccCC--CC--cchHHHHHHHHHhCCc
Confidence 9999987754321 11 3345777888887665
No 373
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=30.85 E-value=2.4e+02 Score=23.83 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=34.5
Q ss_pred hhhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHH---HHHHHHHHHHHHhc
Q 048793 51 LQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMY---IVLQRMKTLIEDCY 106 (683)
Q Consensus 51 ~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~---~~l~~a~~ll~~c~ 106 (683)
.|+|=..|+.||+-..||++.|...+. +...-....+.-. ..+.+...+++.|.
T Consensus 3 l~~hRe~LV~rI~~v~plLD~Ll~n~~--it~E~y~~V~a~~T~qdkmRkLld~v~akG 59 (85)
T cd08324 3 LKSNRELLVTHIRNTQCLVDNLLKNDY--FSTEDAEIVCACPTQPDKVRKILDLVQSKG 59 (85)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCC--ccHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 356777899999999999999998765 3443233333222 33444444555555
No 374
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=30.79 E-value=23 Score=33.38 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=19.7
Q ss_pred CcccccccccCCCCceecCCccccch
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDR 300 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r 300 (683)
++.+||||++.-.+-|++-|- .|++
T Consensus 1 ed~~CpICme~PHNAVLLlCS-S~~k 25 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS-SHEK 25 (162)
T ss_pred CCccCceeccCCCceEEEEec-cccC
Confidence 467899999999999988553 3544
No 375
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=29.68 E-value=25 Score=26.62 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=11.5
Q ss_pred CCCCccccccccc
Q 048793 272 NVPADFRCPISLE 284 (683)
Q Consensus 272 ~~p~~f~CPis~~ 284 (683)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999974
No 376
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.48 E-value=9.2e+02 Score=27.76 Aligned_cols=205 Identities=18% Similarity=0.161 Sum_probs=101.0
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH----HHHh--cccCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK----TRIM--ETEGALNGVIEVLRSGATWEAKGNAAATIFS 487 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k----~~I~--~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~ 487 (683)
..+-.|+.+|+.- +.+..+....-+.. .. ...+ ..+. ..+.++..+.+.+.++. .... .|+.++..
T Consensus 311 ~~f~~lv~~lR~~----~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~-~~~~-ea~~~~~~ 382 (574)
T smart00638 311 AKFLRLVRLLRTL----SEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKK-ITPL-EAAQLLAV 382 (574)
T ss_pred HHHHHHHHHHHhC----CHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-CCHH-HHHHHHHH
Confidence 4455677777765 54444444333332 11 1111 1222 22357888888888762 3222 23333333
Q ss_pred hhc-CcchhhHHhhhcccHHHHHHhhcCC----ChhHHHHHHHHHHHh----cCCcchhHHHHhcCchHHHHHHhcc---
Q 048793 488 LSG-VHAHRKTLGRKTRVVKGLMDLVKGG----PTSSKRDALVAILNL----AGDRETVGRLVERGIVEIVAEAMDV--- 555 (683)
Q Consensus 488 Ls~-~~~~~~~i~~~~G~i~~Lv~lL~~~----~~~~~~~A~~aL~nL----s~~~~n~~~iv~aG~V~~Lv~lL~~--- 555 (683)
+.. ....- ...+..+..++.++ .+.....|+.++.+| |.+.+.+...+....++.|.+.|..
T Consensus 383 ~~~~~~~Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~ 456 (574)
T smart00638 383 LPHTARYPT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVS 456 (574)
T ss_pred HHHhhhcCC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHh
Confidence 322 11111 23455677777653 233555566666655 4444333233334466777776652
Q ss_pred --CchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHh---cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHH
Q 048793 556 --LPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLR---EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVI 630 (683)
Q Consensus 556 --~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~---~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L 630 (683)
+.+...-+|.+|.|++ .+. .+..|...+. ..+...|-.|+++|..+....+.. + .+.|
T Consensus 457 ~~~~~~~~~~LkaLGN~g-~~~------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v---------~~~l 519 (574)
T smart00638 457 KGDEEEIQLYLKALGNAG-HPS------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-V---------QEVL 519 (574)
T ss_pred cCCchheeeHHHhhhccC-Chh------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-H---------HHHH
Confidence 1222334455554432 221 2344444444 235678889999999887654432 2 3345
Q ss_pred HHHhhcC--CHHHHHHHHHHH
Q 048793 631 WELMESG--TARARRKAAALL 649 (683)
Q Consensus 631 ~~Ll~~~--~~~~k~kA~~lL 649 (683)
+.+..+. ++.+|-.|..+|
T Consensus 520 ~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 520 LPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHcCCCCChHHHHHHHHHH
Confidence 5554543 455555554443
No 377
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.35 E-value=9.2e+02 Score=30.21 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=42.0
Q ss_pred hccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHH
Q 048793 380 LATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVT 440 (683)
Q Consensus 380 L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~ 440 (683)
|++. +.+.+...+..+..+-..+++|-...-+.--+|.++.-+... ...+|...+.
T Consensus 476 Lkae-nkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegf----PsslqvkiLk 531 (2799)
T KOG1788|consen 476 LKAE-NKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGF----PSSLQVKILK 531 (2799)
T ss_pred HHhc-CcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCC----ChHHHHHHHH
Confidence 4555 788889999999988888888877777788899998877766 4555544443
No 378
>PHA02862 5L protein; Provisional
Probab=28.85 E-value=49 Score=30.75 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=29.6
Q ss_pred cccccccCCCCceecCCcc-----ccchhhHHHHHhc-CCCCCCCCCCccCC
Q 048793 278 RCPISLELMRNPVVVATGQ-----TYDRQSISLWIES-GHNTCPKTGQTLAH 323 (683)
Q Consensus 278 ~CPis~~~m~dPv~~~~g~-----ty~r~~I~~w~~~-g~~~cP~~~~~l~~ 323 (683)
.|=||++-=.+. .-||+. -.-++|+++|+.. +...||.|+.++..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 366666553333 345532 2447899999975 45789999988753
No 379
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=28.75 E-value=57 Score=30.91 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=31.9
Q ss_pred cccccccccCCCCceecCCcc-----ccchhhHHHHHhc-CCCCCCCCCCccCC
Q 048793 276 DFRCPISLELMRNPVVVATGQ-----TYDRQSISLWIES-GHNTCPKTGQTLAH 323 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~-----ty~r~~I~~w~~~-g~~~cP~~~~~l~~ 323 (683)
+-.|=||.+-.. +..-||.. ..=++|+++|++. +...||.|++++..
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 345778876643 33445542 2358999999986 45789999988753
No 380
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=28.72 E-value=46 Score=25.61 Aligned_cols=26 Identities=27% Similarity=0.652 Sum_probs=22.1
Q ss_pred ccccccccCC--CCceec--CCccccchhh
Q 048793 277 FRCPISLELM--RNPVVV--ATGQTYDRQS 302 (683)
Q Consensus 277 f~CPis~~~m--~dPv~~--~~g~ty~r~~ 302 (683)
-.||+|++.+ .|.+++ .||-.|=|.|
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 4699999999 788877 7899998876
No 381
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=28.53 E-value=1.5e+02 Score=25.46 Aligned_cols=70 Identities=10% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793 462 LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
....+..|.++ .+.+|..+...|..|..... ..+....+++..+...|+++++=+--+|+..|..|+...
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 34455556666 58899999999999987766 222232577888888888888778888999998887744
No 382
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=28.32 E-value=3.2e+02 Score=25.39 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=56.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHH-HHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIAL-LARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~-Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
+.++..|-+.|.++.++.++..|+..|-.+.+... .-...|+..+.+.. |++++.... ..+..++..++..+..++.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~-~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKN-NPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccC-CCcHHHHHHHHHHHHHHHH
Confidence 44566777888743388999999999999988764 34566777789987 999996421 0145789999998888863
No 383
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=28.31 E-value=1.4e+02 Score=25.70 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=45.1
Q ss_pred chhhhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhc-ccc
Q 048793 49 FLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCY-NGS 109 (683)
Q Consensus 49 ~~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~-~~s 109 (683)
.+-|+|=..|++++.-..|+|+.|...++ +.+.-......-...-++|+.|+..-. .|.
T Consensus 9 ~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V--lt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~ 68 (94)
T cd08329 9 SLIRKNRMALFQHLTSVLPILDSLLSANV--ITEQEYDVIKQKTQTPLQARELIDTVLVKGN 68 (94)
T ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHcCC--CCHHHHHHHHcCCChHHHHHHHHHHHHhhhH
Confidence 46688999999999889999999998886 566556555555555688999888754 443
No 384
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=28.31 E-value=5.2e+02 Score=24.51 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHHHhccCCccchhhhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHh
Q 048793 26 SDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDC 105 (683)
Q Consensus 26 ~~~~l~~~l~~l~~~i~~~~~~~~~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c 105 (683)
....+|...++-++.|++.++....-.+|..+|+. .-..=||.|+++.. .++-+ -.-|++
T Consensus 86 eankvveavi~avnlissaadqvk~a~knmhdlaq---~aeidlekik~ssd-----kai~a-------~nvake----- 145 (254)
T PF03207_consen 86 EANKVVEAVINAVNLISSAADQVKSAQKNMHDLAQ---MAEIDLEKIKNSSD-----KAIFA-------SNVAKE----- 145 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHhhHHHHhcccc-----hHHHH-------HHHHHH-----
Confidence 34567788888888888877777777788888873 33334566664321 11111 111111
Q ss_pred cccchHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHh
Q 048793 106 YNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLD 185 (683)
Q Consensus 106 ~~~sklyl~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~s~ev~e~v~~~~~q~~~~~~~~~~d~~~~~l~~~v~~~l~ 185 (683)
-|-+-. ..-..+|.++.+-...+....-....-|+||+.--+.+ .-.|++ ....-..-......|.+.|+
T Consensus 146 -----ay~ltk--aaeqnmqklykeq~~~~~~~s~sd~~~s~eikqakeav-eiawka--tv~akd~lidve~~vke~ld 215 (254)
T PF03207_consen 146 -----AYSLTK--AAEQNMQKLYKEQQKISESESESDYSDSAEIKQAKEAV-EIAWKA--TVEAKDKLIDVENTVKETLD 215 (254)
T ss_pred -----HHhHHH--HHHHHHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH-HHHHHH--HhhhhhhHhhHHHHHHHHHH
Confidence 122221 12345677777777777776555455678887444443 235666 22211122244455666776
Q ss_pred hhhhc
Q 048793 186 QIKKE 190 (683)
Q Consensus 186 ~~~~~ 190 (683)
+++.+
T Consensus 216 kikte 220 (254)
T PF03207_consen 216 KIKTE 220 (254)
T ss_pred HHhhh
Confidence 65544
No 385
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.28 E-value=7.7e+02 Score=31.97 Aligned_cols=108 Identities=8% Similarity=0.105 Sum_probs=67.1
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHH-HHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc-c
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRA-CIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS-I 447 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~-~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs-~ 447 (683)
...+..++..|... ....|..|+++|..+..-++.-.. .-++.|+.. -+... ...+++.|+..++... .
T Consensus 815 D~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R~~Ds----sasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 815 DPYLKLILSVLGEN-AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----RLNDS----SASVREAALDLVGRFVLS 885 (1692)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----hhccc----hhHHHHHHHHHHhhhhhc
Confidence 34566777788776 789999999999999877763321 122333322 22233 5789999999888543 2
Q ss_pred CchhHHHHhcccCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCcch
Q 048793 448 LEANKTRIMETEGALNGVIE-VLRSGATWEAKGNAAATIFSLSGVHAH 494 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~-lL~~~~~~~~~~~Aa~~L~~Ls~~~~~ 494 (683)
+++.-.+..+. +.+ ++.. +..+|..+...++.+|..-++
T Consensus 886 ~~e~~~qyY~~------i~erIlDt--gvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 886 IPELIFQYYDQ------IIERILDT--GVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred cHHHHHHHHHH------HHhhcCCC--chhHHHHHHHHHHHHHHhCCC
Confidence 33333333221 222 2333 478899999999998875443
No 386
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=28.03 E-value=43 Score=36.27 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=23.1
Q ss_pred CCcccc-----chhhHHHHHhc------------CCCCCCCCCCccCCCC
Q 048793 293 ATGQTY-----DRQSISLWIES------------GHNTCPKTGQTLAHTN 325 (683)
Q Consensus 293 ~~g~ty-----~r~~I~~w~~~------------g~~~cP~~~~~l~~~~ 325 (683)
+|++=| |.+|+.+||.. |..+||.||.++...+
T Consensus 305 ~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 305 PCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 444445 45789999931 4568999999876554
No 387
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=27.93 E-value=40 Score=31.03 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=32.7
Q ss_pred cccccccccCCCC--cee-cCCccc------cchhhHHHHHhcCCCCCCCCCCc
Q 048793 276 DFRCPISLELMRN--PVV-VATGQT------YDRQSISLWIESGHNTCPKTGQT 320 (683)
Q Consensus 276 ~f~CPis~~~m~d--Pv~-~~~g~t------y~r~~I~~w~~~g~~~cP~~~~~ 320 (683)
..-|.||.+-..+ -|+ +++|.| ||..|+++|-+ +...+|.-|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccce
Confidence 3459999987776 554 477755 89999999964 46788888754
No 388
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=27.42 E-value=3.6e+02 Score=31.83 Aligned_cols=131 Identities=11% Similarity=0.102 Sum_probs=86.5
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhh-CCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL-GPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL-~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
..++.|.+.++.. +...|..++..+..++..-+ ...+..-++|.|-.+- ... +..++.+++.++..+. ..
T Consensus 389 ~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt----~~~vkvn~L~c~~~l~-q~ 459 (700)
T KOG2137|consen 389 KILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTT----NLYVKVNVLPCLAGLI-QR 459 (700)
T ss_pred HHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhccc----chHHHHHHHHHHHHHH-HH
Confidence 4567777888877 89999999999998876554 4455666788877763 334 7889999999998887 21
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhhcCCC
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLVKGGP 516 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL~~~~ 516 (683)
-.+..+++. +.++.+-.+.. ++...-....+..++.....+. +.+. ..++|.++.+...+.
T Consensus 460 lD~~~v~d~---~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~--~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDE---LLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMA--ENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHH---HHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeeh--hhhhhhhhhhhhccc
Confidence 223333332 33444444444 5777766666666777666664 3333 467888887776554
No 389
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=27.26 E-value=9.8e+02 Score=32.01 Aligned_cols=170 Identities=8% Similarity=0.037 Sum_probs=91.9
Q ss_pred HHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHh----cccCcHHHHH
Q 048793 391 DAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIM----ETEGALNGVI 466 (683)
Q Consensus 391 ~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~----~~~G~I~~Lv 466 (683)
-.+..|..++..+. +|..+.-...-..+...+..-.+..+..+...|+..|..|+..--.+..+. .. ..+.++.
T Consensus 1111 FsLqKLveIa~~Nm-~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQk-efLkPfe 1188 (1780)
T PLN03076 1111 FSLTKIVEIAHYNM-NRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQN-EFMKPFV 1188 (1780)
T ss_pred hHHHHHHHHHHhcc-cchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHH-HHHHHHH
Confidence 34444444444443 455544444344444432221011256777888888888875211121111 22 5788899
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc----CCChhHHHHHHHHHHHhcCCcchhHHHH-
Q 048793 467 EVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK----GGPTSSKRDALVAILNLAGDRETVGRLV- 541 (683)
Q Consensus 467 ~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~----~~~~~~~~~A~~aL~nLs~~~~n~~~iv- 541 (683)
.++.+..+.++++....++.++..... ..| . .+-+.+..+|. +..+...+.|..++..++.+.= ..+.
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-k--SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f--~~l~~ 1261 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-K--SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF--PYITE 1261 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-h--cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh--hhccc
Confidence 988876678999999999998865432 233 1 24566666654 3345677778877776654211 1111
Q ss_pred -hcCchHHHHHHhc----c--CchhHHHHHHHHHH
Q 048793 542 -ERGIVEIVAEAMD----V--LPEESVTILEAVVK 569 (683)
Q Consensus 542 -~aG~V~~Lv~lL~----~--~~~~~~~aL~~L~~ 569 (683)
..+...-+|..|. . +.+....|+..|..
T Consensus 1262 ~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~ 1296 (1780)
T PLN03076 1262 TETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 1296 (1780)
T ss_pred cchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH
Confidence 1244444444443 1 23445566666654
No 390
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=27.05 E-value=2.2e+02 Score=30.49 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcCcchhhHHhh-hcccHHHHHHhhcCCC---hhHHHHHHHHHHHhcCCcchhHHHHh-------cCc
Q 048793 477 AKGNAAATIFSLSGVHAHRKTLGR-KTRVVKGLMDLVKGGP---TSSKRDALVAILNLAGDRETVGRLVE-------RGI 545 (683)
Q Consensus 477 ~~~~Aa~~L~~Ls~~~~~~~~i~~-~~G~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~-------aG~ 545 (683)
+|-.|...|..+.........+.. +.+.+..|++++.-++ ...+..|+.+|..|+.+..-...+++ +|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 444556666655555555555554 1349999999997653 45888999999999886554333332 366
Q ss_pred hHHHHHH
Q 048793 546 VEIVAEA 552 (683)
Q Consensus 546 V~~Lv~l 552 (683)
+..+++-
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 6666553
No 391
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.67 E-value=32 Score=36.99 Aligned_cols=66 Identities=17% Similarity=0.330 Sum_probs=40.1
Q ss_pred CCcccccccccCCCCce----ecCCccccchhhHHHH-HhcCCCCCCCCCCccCCCCCc----chHHHHHHHHHH
Q 048793 274 PADFRCPISLELMRNPV----VVATGQTYDRQSISLW-IESGHNTCPKTGQTLAHTNLV----TNTALKNLIALW 339 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv----~~~~g~ty~r~~I~~w-~~~g~~~cP~~~~~l~~~~l~----pn~~l~~~i~~~ 339 (683)
.++|.||+++.+|++-- +-.+|..||-.+|++- +...+...-.+..|++..+++ ||..=+.-+.+|
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQdP~~lek~~~~~F 173 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQDPNNLEKFNMSDF 173 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeecCcchhhccchhhH
Confidence 47899999999998753 2378999999999984 222233333333444333332 554333334444
No 392
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=26.31 E-value=28 Score=25.96 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=8.5
Q ss_pred CCCCccccccccc
Q 048793 272 NVPADFRCPISLE 284 (683)
Q Consensus 272 ~~p~~f~CPis~~ 284 (683)
.+|++++||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 6899999999963
No 393
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.40 E-value=34 Score=35.28 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=22.5
Q ss_pred ccchhhHHHHHh------------cCCCCCCCCCCccCCCC
Q 048793 297 TYDRQSISLWIE------------SGHNTCPKTGQTLAHTN 325 (683)
Q Consensus 297 ty~r~~I~~w~~------------~g~~~cP~~~~~l~~~~ 325 (683)
..||+|+.+||. +|..+||.|++.+...+
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 388999999982 25678999998876544
No 394
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=25.12 E-value=1e+03 Score=27.60 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHH
Q 048793 114 LMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQ 159 (683)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~s~ev~e~v~~~~~q 159 (683)
-.++..++.+.+.-+..+...++.+|----.+..++-+|+..++.-
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~g 234 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEG 234 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Confidence 4678899999999999999999999965555677888888888853
No 395
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.64 E-value=6.1e+02 Score=27.86 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=64.9
Q ss_pred HHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh-cCCHHH
Q 048793 563 ILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELME-SGTARA 641 (683)
Q Consensus 563 aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~-~~~~~~ 641 (683)
+|.+...+...+++-. .++..|.+.|.+.++.+.-.|...|-++..+++... +.-+....+...|..|+. +..+++
T Consensus 29 IlDvCD~v~~~~~~~k--d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~-r~EVsSr~F~~el~al~~~~~h~kV 105 (462)
T KOG2199|consen 29 ILDVCDKVGSDPDGGK--DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF-RLEVSSRDFTTELRALIESKAHPKV 105 (462)
T ss_pred HHHHHHhhcCCCcccH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH-HHHHhhhhHHHHHHHHHhhcccHHH
Confidence 3444444444443221 246778888888999999999999999888877643 444666788999999988 668899
Q ss_pred HHHHHHHHHHHHh
Q 048793 642 RRKAAALLRILRR 654 (683)
Q Consensus 642 k~kA~~lL~~l~~ 654 (683)
++|-..+++...+
T Consensus 106 ~~k~~~lv~eWse 118 (462)
T KOG2199|consen 106 CEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888887766
No 396
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=24.63 E-value=1e+02 Score=27.37 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhH
Q 048793 386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435 (683)
Q Consensus 386 ~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~q 435 (683)
+-.....+..+..++... +--..+++.|+++.|+.||.+. +..+.
T Consensus 60 E~dLd~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~He----N~DIa 104 (108)
T PF08216_consen 60 EVDLDEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHE----NTDIA 104 (108)
T ss_pred HHHHHHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCC----Cccee
Confidence 344456777888887754 4666788999999999999998 66553
No 397
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.26 E-value=1.7e+03 Score=29.12 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcc-cCcH
Q 048793 386 MEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMET-EGAL 462 (683)
Q Consensus 386 ~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~-~G~I 462 (683)
...+..|+.-+..+++.. +..+.. .-.||.|.+.=..+ |..+|. |.+-++|.-.-+ .|..+-+. ...+
T Consensus 971 wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP----~~~Vq~-aM~sIW~~Li~D-~k~~vd~y~neIl 1041 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDP----DKKVQD-AMTSIWNALITD-SKKVVDEYLNEIL 1041 (1702)
T ss_pred hhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCC----cHHHHH-HHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 344455555555555433 222221 13566666666666 888875 555566643322 22211110 0234
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHH---HHHHHHHHHhcCC---cc-
Q 048793 463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSK---RDALVAILNLAGD---RE- 535 (683)
Q Consensus 463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~---~~A~~aL~nLs~~---~~- 535 (683)
.-|+.-|.+. ...+|+.+|-+|..|-...++-...-.-.....++.+...+=.+.++ ..++.+|..||.. ..
T Consensus 1042 ~eLL~~lt~k-ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1042 DELLVNLTSK-EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHHhccch-hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 4455445454 48999999999999998766544433323345555555443223344 4456667666542 11
Q ss_pred -hhHHHHhcCchHHHHH--HhccCchhHHHHHHHHHHcC
Q 048793 536 -TVGRLVERGIVEIVAE--AMDVLPEESVTILEAVVKRG 571 (683)
Q Consensus 536 -n~~~iv~aG~V~~Lv~--lL~~~~~~~~~aL~~L~~l~ 571 (683)
.+..-+-+-++|.|++ +|+.-++...-++.++..++
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~ 1159 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLA 1159 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH
Confidence 2333333455666664 34334566677777776654
No 398
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=24.20 E-value=3.2e+02 Score=29.64 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHHHH-hcCCcchhHH
Q 048793 462 LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAILN-LAGDRETVGR 539 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~n-Ls~~~~n~~~ 539 (683)
++-+++=|..+.+...|..++--|..-+.+++.+..+.. .|.+..+++.+.+.. .....-++.+++. |+.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455555566554678888888888888889999999988 899999999985443 3244444444444 4554444444
Q ss_pred HHhcCchHHHHHHhc
Q 048793 540 LVERGIVEIVAEAMD 554 (683)
Q Consensus 540 iv~aG~V~~Lv~lL~ 554 (683)
+.+.+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 445566666666665
No 399
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.75 E-value=57 Score=40.13 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=34.7
Q ss_pred ccccccccC-----CCCceec--CCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 277 FRCPISLEL-----MRNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 277 f~CPis~~~-----m~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
-.|-||++- .-+|-+. .||--.||.|-+-=.++|+..||.|+.++.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 379999753 3445433 667779999986667789999999998875
No 400
>PHA03096 p28-like protein; Provisional
Probab=22.73 E-value=49 Score=34.72 Aligned_cols=42 Identities=19% Similarity=0.469 Sum_probs=28.6
Q ss_pred cccccccCCC--------CceecCCccccchhhHHHHHhcC--CCCCCCCCC
Q 048793 278 RCPISLELMR--------NPVVVATGQTYDRQSISLWIESG--HNTCPKTGQ 319 (683)
Q Consensus 278 ~CPis~~~m~--------dPv~~~~g~ty~r~~I~~w~~~g--~~~cP~~~~ 319 (683)
.|-||++.-. .-.+..|.|+||-.||..|..+. ..+||.|+.
T Consensus 180 ~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 180 ICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 3666665432 22355789999999999998643 356777764
No 401
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.59 E-value=7.7e+02 Score=28.73 Aligned_cols=131 Identities=9% Similarity=0.041 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhc-ccCcHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIME-TEGALN 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~-~~G~I~ 463 (683)
++..+..+...|+...+.-| ..+..-.++...-+.|+.. +..++.....+|..|+..+.+...|.. .+..-.
T Consensus 288 ~d~IRv~c~~~L~dwi~lvP---~yf~k~~~lry~GW~LSDn----~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 288 DDVIRVLCSMSLRDWIGLVP---DYFRKILGLRYNGWSLSDN----HEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred hHHHHHHHHHHHHHHHhcch---HHHHhhhcccccccccccc----hHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 56666777777776665544 2333444666666777777 788999999999999987766654432 114778
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcC---cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGV---HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~---~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
.+++++..+.+. +|..+..++..|... +.....| +-.++-++.++.++.-...+.++|.
T Consensus 361 rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~~SeIlI---------vsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 361 RILEFLRTDSDC-VRICSIKSLCYLRILGVLSSSEILI---------VSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHhhccch-hhHHHHHHHHHHHHhcccchhHHHH---------HHHHHhcCCCcchHHHHHHHHHHHH
Confidence 889999888555 888888887776542 2222222 2233334555555555556666665
No 402
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.49 E-value=1.2e+02 Score=27.04 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=33.2
Q ss_pred cHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHh
Q 048793 504 VVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE 542 (683)
Q Consensus 504 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 542 (683)
+|+.||+-|.+.++++...|+.+|...|..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 588999999999999999999999999998866555554
No 403
>PRK06424 transcription factor; Provisional
Probab=22.45 E-value=2.6e+02 Score=26.19 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=36.6
Q ss_pred chhhHHHHHHHHHHHHhhhhhccCCCchhHHHHHHH---HHHHhhhhhc-CCCCHHHHHHHHhhcCCC
Q 048793 145 LSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQV---LTTLDQIKKE-IVPDHSILKQMFESLGLR 208 (683)
Q Consensus 145 ~s~ev~e~v~~~~~q~~~~~~~~~~d~~~~~l~~~v---~~~l~~~~~~-~~~d~~~l~~~~~~l~~~ 208 (683)
+.++..+.+..+-...+++.+ ..+-..++|...+ ...+.+.+++ ..|+.+.+.+++..||++
T Consensus 74 ~~~~~~~~~~~~g~~Ir~lRe--~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvs 139 (144)
T PRK06424 74 ASDEDLDIVEDYAELVKNARE--RLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGIT 139 (144)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCC
Confidence 334444455555544444422 2334666677655 2455566655 567788888888888875
No 404
>PLN02436 cellulose synthase A
Probab=22.31 E-value=65 Score=39.61 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=34.7
Q ss_pred ccccccccC-----CCCceec--CCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 277 FRCPISLEL-----MRNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 277 f~CPis~~~-----m~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
-.|.||++- .-+|-+. .||--.||.|-+-=.++|+..||.|++++.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 489999753 3445433 467779999986666789999999998876
No 405
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=21.97 E-value=2.6e+02 Score=27.23 Aligned_cols=65 Identities=25% Similarity=0.226 Sum_probs=48.5
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.+.+.++....+...+..|+.++..+-+.+=- -. .-.+|.|+.|..+.++.++.+|-.+++.+.+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv---nP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLV---NP----KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC---Ch----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 45556666677888888898887776653211 11 1258899999999999999999999999876
No 406
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=21.88 E-value=57 Score=28.87 Aligned_cols=44 Identities=27% Similarity=0.495 Sum_probs=26.3
Q ss_pred Cceec---CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHH
Q 048793 288 NPVVV---ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCR 341 (683)
Q Consensus 288 dPv~~---~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~ 341 (683)
.||.+ .|+ |-||.|+++|=. .|.- .+|+..+ -++. -.+|..|..
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~-----Ip~g-r~Lt~~e--q~yi-v~vi~~Wi~ 110 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG-----IPKG-RELTEEE--QAYI-VDVIMRWIE 110 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC-----CCCC-CCCCHHH--HHHH-HHHHHHHHh
Confidence 78877 455 689999999942 3443 3444332 1232 356777754
No 407
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.64 E-value=2.7e+02 Score=22.17 Aligned_cols=32 Identities=25% Similarity=0.570 Sum_probs=23.0
Q ss_pred hhcCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048793 188 KKEIVPDHSILKQMFESLGLRNSSACKEEIESLEE 222 (683)
Q Consensus 188 ~~~~~~d~~~l~~~~~~l~~~~~~~~~~E~~~l~~ 222 (683)
+.+..| .++.|++.+|+.|......-+..|++
T Consensus 21 ~~G~~P---t~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 21 ENGYPP---TVREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp HHSS------HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HcCCCC---CHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345555 56679999999999998888877754
No 408
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=21.43 E-value=54 Score=32.42 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=34.4
Q ss_pred ccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
..|.+|..+.-.-+.- .||..|-+.||++++.+ ...||.|+.-.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 4799999886654433 67777889999999987 78899997543
No 409
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=21.38 E-value=40 Score=25.12 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=21.0
Q ss_pred ecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 291 VVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 291 ~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
+-.+.|-.|..|+..-+.. ...||.|+++|+.
T Consensus 16 i~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred eeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 3355788999998887765 6689999998864
No 410
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=1e+02 Score=31.97 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=40.7
Q ss_pred CCCcccccccccCCCCceecCC----ccccchhhHHHHH----hcCCCCCCCCCC-ccCCCCCcchHHHHHHHHHH
Q 048793 273 VPADFRCPISLELMRNPVVVAT----GQTYDRQSISLWI----ESGHNTCPKTGQ-TLAHTNLVTNTALKNLIALW 339 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~----g~ty~r~~I~~w~----~~g~~~cP~~~~-~l~~~~l~pn~~l~~~i~~~ 339 (683)
.-..++|-+|.|-+.|.-.+.| .|.||--|=.+.+ ..|...||.-.+ +|- ..-+|.--+...|...
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLv-gS~vPWAFMQGEIatI 339 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLV-GSNVPWAFMQGEIATI 339 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCccc-CCcccHHHhhhhHHHH
Confidence 3345899999999999888755 6889855544444 445557876532 222 2234554455555544
No 411
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=21.12 E-value=1.2e+03 Score=27.94 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=34.9
Q ss_pred HHHHHHHhhhhHHHHHHHhcCCCCCCh---hHhhhHHHHHHHHHHHHHHHHHhcccchHHHHHhhHHHHHHHHHHHHH
Q 048793 56 LSIIRKVKLLSLFFEELLANQVSFFSP---PTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTID 130 (683)
Q Consensus 56 ~~l~r~i~lL~~lleEl~~~~~~~~~~---~~~~~l~~L~~~l~~a~~ll~~c~~~sklyl~~~~~~~~~~~~~~~~~ 130 (683)
.+|++--+++.|..+.|.+. .+.... ....+......-++++++.+..-.+| +-.-+.++.+|..+...
T Consensus 4 ~ql~qlt~i~~~~~~~L~~~-i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~-----l~~ID~ai~~~l~lIe~ 75 (683)
T PF08580_consen 4 NQLSQLTSILLPIALYLSES-IPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREG-----LEEIDSAISRFLDLIEV 75 (683)
T ss_pred HHHHHHHhcccchHHHHHHH-hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHh
Confidence 36777778999998888774 220111 11122223333344444444444333 23445566666655544
No 412
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=46 Score=36.98 Aligned_cols=66 Identities=17% Similarity=0.349 Sum_probs=48.8
Q ss_pred CCCCCccccccc-ccCCCCceec--CCccccchhhHHHHHhcC-CCCCCCCCCccCCCCCcchHHHHHHHHH
Q 048793 271 ANVPADFRCPIS-LELMRNPVVV--ATGQTYDRQSISLWIESG-HNTCPKTGQTLAHTNLVTNTALKNLIAL 338 (683)
Q Consensus 271 ~~~p~~f~CPis-~~~m~dPv~~--~~g~ty~r~~I~~w~~~g-~~~cP~~~~~l~~~~l~pn~~l~~~i~~ 338 (683)
...+++..||++ .+.|.|-.++ .|+.+||-.||++.+..+ ...|+.|... ...+.++..++..+..
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~--~~~~~~p~~~r~~~n~ 283 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVL--ADDLLPPKTLRDTINR 283 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhccc--ccccCCchhhHHHHHH
Confidence 578899999999 8999999887 788999999999988653 3456665432 3445666666665543
No 413
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.05 E-value=7.3e+02 Score=27.12 Aligned_cols=159 Identities=15% Similarity=0.106 Sum_probs=77.9
Q ss_pred HhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhh-c--CCChh
Q 048793 443 LNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLV-K--GGPTS 518 (683)
Q Consensus 443 ~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL-~--~~~~~ 518 (683)
=||+..++.-+ +.+. .-.+-+=+-+..+....-|..|+..|..|+...+.. ..+. .+.|..++.-. . +.+.+
T Consensus 195 Pnl~~~e~D~E-lfEd-dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~--~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 195 PNLCLREEDEE-LFED-DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL--MQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp HHHS--HHHHH-HHHH-SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-TTT-HH
T ss_pred CccCCCHHHHH-HHcc-CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhhCCcccHH
Confidence 36665544333 3333 445555444443323456778888888998542211 1111 12233322211 1 23456
Q ss_pred HHHHHHHHHHHhcCCcch-------------hHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHH
Q 048793 519 SKRDALVAILNLAGDRET-------------VGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKK 585 (683)
Q Consensus 519 ~~~~A~~aL~nLs~~~~n-------------~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~ 585 (683)
.+..|+..+..|+..... ...+...-++|-|..-....+-....|+..+......-.--.-.+.++.
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~ 350 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPL 350 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 777888888888775532 2222233333333300001122377777777654432111122346889
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 048793 586 LCILLREGSDTSRESAAATL 605 (683)
Q Consensus 586 Lv~lL~~~s~~~ke~A~~aL 605 (683)
++..|.+.+.-+.-.|+.++
T Consensus 351 l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 351 LVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhCCCCcchhhhhhhhC
Confidence 99999988888888888763
No 414
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.90 E-value=5.3e+02 Score=28.31 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=58.1
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
.+..+.++.+.|... ++.+...|+..+..++.... .-|..|....++..|..++.+.. .+.+.+.....+.+++.
T Consensus 43 ~kd~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~---h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKA---HPKVCEKMRDLVKEWSE 118 (462)
T ss_pred cHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcc---cHHHHHHHHHHHHHHHH
Confidence 455677888999998 99999999999988887653 24666777789999999998431 77888877777777763
No 415
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.85 E-value=70 Score=39.27 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=34.7
Q ss_pred ccccccccC-----CCCceec--CCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 277 FRCPISLEL-----MRNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 277 f~CPis~~~-----m~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
-.|.||++- .-||-+. .||--.||.|-+-=.++|+..||.|++++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 468888753 4456543 667779999986667789999999998876
No 416
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=20.76 E-value=3.4e+02 Score=31.98 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=71.2
Q ss_pred HHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhc-cc----CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 416 IALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIME-TE----GALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 416 Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~-~~----G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
...++.+|.++ .-.++...+.++.|+..+-....++++ .+ ..+..+++-|... ++-.|..|...+..+..
T Consensus 301 ~~~~~~LLdse----s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifd 375 (1128)
T COG5098 301 YEHFDELLDSE----SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFD 375 (1128)
T ss_pred HHHHHHHhccc----chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHh
Confidence 35678889988 777888888888888654222222332 11 2344444444444 68889888888877765
Q ss_pred CcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793 491 VHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD 533 (683)
Q Consensus 491 ~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.. -...+..+..+...++-|.+.+.-++++|+..+..|-..
T Consensus 376 l~--sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 376 LN--SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred Cc--ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 32 122222245666777888888888889999888877543
No 417
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.52 E-value=9.1e+02 Score=27.40 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=50.8
Q ss_pred hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc---ccCc-----------hhHHHHhcccCcHHHHHHHHhc
Q 048793 406 SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNL---SILE-----------ANKTRIMETEGALNGVIEVLRS 471 (683)
Q Consensus 406 nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL---s~~~-----------~~k~~I~~~~G~I~~Lv~lL~~ 471 (683)
...|+.+.+.|+.|+.+|.... +..++.+|...|..+ +.+. .--..++.. ..|..|+..+-.
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~---~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~-~~v~~Ll~~mL~ 129 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSY---SSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSE-ETVEKLLDIMLN 129 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhCh-HHHHHHHHHHhc
Confidence 4567778999999999997442 778999998887776 2221 112234443 567767766553
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 048793 472 GATWEAKGNAAATIFSLS 489 (683)
Q Consensus 472 ~~~~~~~~~Aa~~L~~Ls 489 (683)
+....+..+++.++..|-
T Consensus 130 ~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 130 SQGGSSLVNGVSILIELI 147 (475)
T ss_pred CCCcchHHHHHHHHHHHH
Confidence 112445566666666664
No 418
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=20.29 E-value=5.8e+02 Score=22.28 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=51.2
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCC--CCCChhhHHHHHHHHHhc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDT--ASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~--~~~d~~~qe~A~~aL~nL 445 (683)
+.++..|.+.|.+. ++..+..|+..|..+.+... .....+.....+-.++.+..... ...+..+++.+...+..+
T Consensus 36 ~~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 44667788899998 99999999999999998874 34555666666555555411111 112567888887766554
Done!