Query 048793
Match_columns 683
No_of_seqs 454 out of 2509
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 23:23:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xm9_A Plakophilin 1; armadill 100.0 3.2E-29 1.1E-33 279.0 27.4 276 372-656 3-362 (457)
2 3l6x_A Catenin delta-1; cateni 100.0 2.1E-28 7.2E-33 276.4 29.2 279 370-656 47-386 (584)
3 3nmw_A APC variant protein; AR 100.0 5.1E-29 1.7E-33 267.4 22.7 266 386-656 46-336 (354)
4 3nmz_A APC variant protein; pr 100.0 4E-28 1.4E-32 268.2 23.2 263 389-656 165-452 (458)
5 3nmw_A APC variant protein; AR 100.0 3.6E-27 1.2E-31 253.0 21.8 249 361-616 64-340 (354)
6 1xm9_A Plakophilin 1; armadill 99.9 1.2E-26 4.1E-31 258.3 24.8 278 369-656 42-451 (457)
7 3now_A UNC-45 protein, SD10334 99.9 4.1E-26 1.4E-30 265.8 27.9 287 361-655 411-738 (810)
8 3nmz_A APC variant protein; pr 99.9 4.3E-26 1.5E-30 251.9 25.6 284 369-654 68-408 (458)
9 3ul1_B Importin subunit alpha- 99.9 1E-25 3.5E-30 254.2 26.9 280 369-655 98-388 (510)
10 3tpo_A Importin subunit alpha- 99.9 2.1E-25 7.2E-30 252.8 29.2 280 369-655 117-407 (529)
11 3l6x_A Catenin delta-1; cateni 99.9 4.3E-25 1.5E-29 249.3 27.8 283 362-655 82-477 (584)
12 3now_A UNC-45 protein, SD10334 99.9 2E-24 6.7E-29 251.7 26.4 283 369-661 493-789 (810)
13 3tpo_A Importin subunit alpha- 99.9 1.5E-23 5.1E-28 237.5 28.3 285 369-656 160-451 (529)
14 4b8j_A Importin subunit alpha- 99.9 4E-23 1.4E-27 233.5 31.6 278 369-655 115-401 (528)
15 3ul1_B Importin subunit alpha- 99.9 2E-23 6.8E-28 235.5 27.0 284 369-655 141-431 (510)
16 4hxt_A De novo protein OR329; 99.9 3.9E-23 1.3E-27 209.0 25.7 236 371-614 2-245 (252)
17 4b8j_A Importin subunit alpha- 99.9 2.5E-22 8.7E-27 226.8 30.3 275 370-654 73-358 (528)
18 4db8_A Armadillo-repeat protei 99.9 3E-23 1E-27 210.9 20.3 231 372-610 13-251 (252)
19 3tt9_A Plakophilin-2; cell adh 99.9 1.7E-23 5.7E-28 210.4 17.9 195 370-572 7-229 (233)
20 4hxt_A De novo protein OR329; 99.9 5.5E-22 1.9E-26 200.6 25.4 238 414-660 2-247 (252)
21 1wa5_B Importin alpha subunit; 99.9 7.8E-22 2.7E-26 223.1 29.3 278 369-655 128-413 (530)
22 2jdq_A Importin alpha-1 subuni 99.9 3E-21 1E-25 212.4 31.3 276 371-655 64-348 (450)
23 1wa5_B Importin alpha subunit; 99.9 5.9E-21 2E-25 215.9 31.4 279 369-656 171-459 (530)
24 2jdq_A Importin alpha-1 subuni 99.9 5.6E-21 1.9E-25 210.2 30.4 279 369-657 105-393 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 8E-21 2.7E-25 213.6 29.6 282 364-655 95-386 (529)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.6E-21 5.6E-26 219.3 22.9 277 369-655 57-340 (529)
27 2f42_A STIP1 homology and U-bo 99.9 3.6E-23 1.2E-27 197.6 6.4 168 144-348 10-178 (179)
28 2z6h_A Catenin beta-1, beta-ca 99.9 3E-21 1E-25 223.8 23.5 276 369-654 54-336 (644)
29 4db8_A Armadillo-repeat protei 99.9 2.3E-21 7.8E-26 196.9 19.9 232 414-654 12-251 (252)
30 2z6h_A Catenin beta-1, beta-ca 99.9 5E-21 1.7E-25 221.9 23.5 274 369-655 12-293 (644)
31 4db6_A Armadillo repeat protei 99.9 1.8E-20 6.1E-25 185.1 21.8 196 369-572 10-209 (210)
32 3tt9_A Plakophilin-2; cell adh 99.9 2.8E-21 9.6E-26 194.2 15.9 189 415-611 9-230 (233)
33 3opb_A SWI5-dependent HO expre 99.9 9.6E-21 3.3E-25 216.9 21.3 291 361-657 366-731 (778)
34 2z6g_A B-catenin; FULL-length, 99.8 3.9E-20 1.3E-24 218.8 22.1 276 369-654 190-472 (780)
35 2c2l_A CHIP, carboxy terminus 99.8 2.4E-20 8.2E-25 193.6 16.9 235 81-348 37-280 (281)
36 2z6g_A B-catenin; FULL-length, 99.8 2.5E-19 8.7E-24 211.9 27.1 280 365-654 229-518 (780)
37 4db6_A Armadillo repeat protei 99.8 5.6E-19 1.9E-23 174.3 19.5 192 412-610 10-209 (210)
38 2kr4_A Ubiquitin conjugation f 99.8 3.2E-20 1.1E-24 156.9 5.4 73 271-344 9-81 (85)
39 2kre_A Ubiquitin conjugation f 99.8 4.9E-20 1.7E-24 160.4 6.2 73 271-344 24-96 (100)
40 1wgm_A Ubiquitin conjugation f 99.8 7.8E-20 2.7E-24 158.5 7.1 75 271-346 17-92 (98)
41 1xqr_A HSPBP1 protein; armadil 99.8 1.2E-17 4.2E-22 174.4 19.4 181 385-572 53-238 (296)
42 3opb_A SWI5-dependent HO expre 99.8 4.6E-17 1.6E-21 186.6 23.8 273 372-654 335-683 (778)
43 1t1h_A Gspef-atpub14, armadill 99.7 6.1E-18 2.1E-22 140.6 6.3 75 271-345 3-77 (78)
44 1xqr_A HSPBP1 protein; armadil 99.7 6E-16 2.1E-20 161.6 18.2 160 369-535 79-241 (296)
45 2yu4_A E3 SUMO-protein ligase 99.7 2.7E-17 9.2E-22 141.7 6.1 73 273-345 4-85 (94)
46 3m62_A Ubiquitin conjugation f 99.6 4.5E-15 1.5E-19 171.8 11.3 74 271-345 886-960 (968)
47 2bay_A PRE-mRNA splicing facto 99.6 9.5E-16 3.2E-20 120.4 2.7 54 276-330 3-57 (61)
48 3ztg_A E3 ubiquitin-protein li 99.5 5.7E-14 2E-18 120.3 7.6 75 271-345 8-85 (92)
49 3htk_C E3 SUMO-protein ligase 99.5 1.5E-13 5.1E-18 137.0 11.5 71 272-342 177-251 (267)
50 3grl_A General vesicular trans 99.4 1.8E-11 6.2E-16 137.1 23.4 278 370-654 20-342 (651)
51 3fl2_A E3 ubiquitin-protein li 99.4 3.5E-13 1.2E-17 122.2 4.8 69 273-341 49-118 (124)
52 1z6u_A NP95-like ring finger p 99.3 7.9E-13 2.7E-17 123.7 4.8 69 273-341 75-144 (150)
53 3grl_A General vesicular trans 99.3 7.1E-10 2.4E-14 124.3 26.2 277 370-653 59-393 (651)
54 2y43_A E3 ubiquitin-protein li 99.2 4.9E-12 1.7E-16 109.8 4.2 70 273-343 19-89 (99)
55 2ckl_A Polycomb group ring fin 99.2 1.2E-11 4.1E-16 109.1 4.8 67 273-340 12-83 (108)
56 3lrq_A E3 ubiquitin-protein li 99.2 9.8E-12 3.4E-16 108.1 3.9 70 273-342 19-89 (100)
57 3hct_A TNF receptor-associated 99.2 1.2E-11 4.3E-16 110.9 4.2 69 271-339 13-81 (118)
58 2ecw_A Tripartite motif-contai 99.1 6E-12 2.1E-16 105.7 1.1 64 271-334 14-82 (85)
59 2ckl_B Ubiquitin ligase protei 99.1 1.6E-11 5.6E-16 116.9 4.2 70 272-341 50-121 (165)
60 2egp_A Tripartite motif-contai 99.1 1.5E-12 5.1E-17 108.0 -2.9 63 272-334 8-76 (79)
61 1jm7_B BARD1, BRCA1-associated 99.1 2.4E-11 8.4E-16 108.8 4.0 67 273-342 19-86 (117)
62 2ecy_A TNF receptor-associated 99.1 4.3E-11 1.5E-15 95.6 5.0 55 272-326 11-65 (66)
63 2ecv_A Tripartite motif-contai 99.1 9.7E-12 3.3E-16 104.4 1.0 64 271-334 14-82 (85)
64 2yur_A Retinoblastoma-binding 99.1 5.9E-11 2E-15 97.1 5.6 59 271-329 10-71 (74)
65 3ltm_A Alpha-REP4; protein eng 99.1 6.5E-09 2.2E-13 102.0 21.6 189 369-613 17-206 (211)
66 1oyz_A Hypothetical protein YI 99.1 5.6E-09 1.9E-13 107.3 21.7 228 369-654 21-250 (280)
67 3l11_A E3 ubiquitin-protein li 99.1 1.4E-11 4.7E-16 110.1 1.6 69 272-340 11-86 (115)
68 2csy_A Zinc finger protein 183 99.1 4.2E-11 1.4E-15 99.8 3.3 61 272-334 11-71 (81)
69 2djb_A Polycomb group ring fin 99.1 1.5E-10 5.1E-15 94.2 5.7 58 271-329 10-68 (72)
70 1jm7_A BRCA1, breast cancer ty 99.1 6.1E-11 2.1E-15 105.2 3.6 67 274-340 19-87 (112)
71 4ayc_A E3 ubiquitin-protein li 99.1 7.5E-11 2.6E-15 108.8 4.3 63 275-340 52-114 (138)
72 3ltj_A Alpharep-4; protein eng 99.0 2.1E-08 7E-13 97.6 21.5 183 371-609 14-197 (201)
73 3ltm_A Alpha-REP4; protein eng 99.0 1.1E-08 3.8E-13 100.4 19.7 188 413-657 18-206 (211)
74 3hcs_A TNF receptor-associated 99.0 1.2E-10 4.2E-15 111.3 4.2 68 272-339 14-81 (170)
75 2ysl_A Tripartite motif-contai 99.0 2.5E-10 8.4E-15 93.0 4.9 56 271-326 15-72 (73)
76 1rmd_A RAG1; V(D)J recombinati 99.0 1.4E-10 4.8E-15 103.6 3.2 66 273-338 20-86 (116)
77 3knv_A TNF receptor-associated 99.0 7.5E-11 2.6E-15 109.0 1.2 67 272-338 27-102 (141)
78 3ltj_A Alpharep-4; protein eng 99.0 2.3E-08 7.7E-13 97.3 19.0 185 413-654 13-198 (201)
79 1g25_A CDK-activating kinase a 99.0 2.1E-10 7.3E-15 91.2 3.5 55 275-329 2-61 (65)
80 2ysj_A Tripartite motif-contai 98.9 6.3E-10 2.2E-14 87.8 5.0 46 272-317 16-63 (63)
81 4fdd_A Transportin-1; heat rep 98.9 1.7E-08 5.8E-13 120.3 16.7 272 371-656 128-431 (852)
82 3ng2_A RNF4, snurf, ring finge 98.9 7.1E-10 2.4E-14 89.7 2.5 57 272-329 6-69 (71)
83 1oyz_A Hypothetical protein YI 98.8 1.7E-07 5.7E-12 96.1 19.7 200 410-653 19-220 (280)
84 2ct2_A Tripartite motif protei 98.8 3.5E-09 1.2E-13 89.4 5.7 53 272-324 11-69 (88)
85 2ecj_A Tripartite motif-contai 98.8 2.6E-09 9E-14 82.6 4.3 46 272-317 11-58 (58)
86 2d8t_A Dactylidin, ring finger 98.8 1.2E-09 3.9E-14 88.6 1.4 52 272-324 11-62 (71)
87 2xeu_A Ring finger protein 4; 98.7 1.7E-09 5.9E-14 85.3 1.4 54 275-329 2-62 (64)
88 1e4u_A Transcriptional repress 98.7 9.4E-09 3.2E-13 84.7 5.6 55 272-326 7-65 (78)
89 4fdd_A Transportin-1; heat rep 98.7 9.8E-08 3.4E-12 113.7 16.4 270 371-655 174-472 (852)
90 2ea6_A Ring finger protein 4; 98.7 6.7E-09 2.3E-13 83.3 3.1 52 271-323 10-68 (69)
91 2ect_A Ring finger protein 126 98.7 2E-08 6.9E-13 82.7 5.4 57 272-329 11-70 (78)
92 1b3u_A Protein (protein phosph 98.6 7.9E-07 2.7E-11 100.3 20.0 263 370-654 323-587 (588)
93 1b3u_A Protein (protein phosph 98.6 1.5E-06 5.1E-11 98.0 21.9 170 371-555 164-335 (588)
94 4gmo_A Putative uncharacterize 98.6 1.7E-07 5.9E-12 108.9 13.4 190 372-569 35-255 (684)
95 1ibr_B P95, importin beta-1 su 98.6 3.5E-07 1.2E-11 99.9 15.1 274 371-657 128-440 (462)
96 4gmo_A Putative uncharacterize 98.6 3.9E-07 1.3E-11 105.9 14.8 189 415-610 35-258 (684)
97 2vgl_B AP-2 complex subunit be 98.6 1.6E-06 5.5E-11 99.0 19.1 262 371-654 121-419 (591)
98 1chc_A Equine herpes virus-1 r 98.5 5.6E-08 1.9E-12 77.7 4.6 48 275-323 4-52 (68)
99 2ecm_A Ring finger and CHY zin 98.5 5.7E-08 2E-12 74.1 4.4 47 275-322 4-54 (55)
100 4ap4_A E3 ubiquitin ligase RNF 98.5 2.8E-08 9.6E-13 90.4 2.2 55 274-329 5-66 (133)
101 2ecn_A Ring finger protein 141 98.5 2.3E-08 7.9E-13 80.5 1.0 52 272-325 11-62 (70)
102 1bor_A Transcription factor PM 98.5 3.9E-08 1.3E-12 75.5 2.0 46 274-323 4-49 (56)
103 2ep4_A Ring finger protein 24; 98.5 1.2E-07 4E-12 77.2 4.9 51 272-323 11-64 (74)
104 2vgl_B AP-2 complex subunit be 98.4 2E-06 6.8E-11 98.3 16.2 258 373-655 51-312 (591)
105 1iym_A EL5; ring-H2 finger, ub 98.4 1.3E-07 4.4E-12 72.1 4.2 48 273-321 2-53 (55)
106 2kiz_A E3 ubiquitin-protein li 98.4 2.3E-07 7.8E-12 74.3 5.0 51 272-323 10-63 (69)
107 2l0b_A E3 ubiquitin-protein li 98.4 1.5E-07 5E-12 80.1 4.0 51 272-323 36-89 (91)
108 1x4j_A Ring finger protein 38; 98.4 1.5E-07 5E-12 76.9 3.6 50 274-324 21-73 (75)
109 1v87_A Deltex protein 2; ring- 98.4 2.1E-07 7.3E-12 82.4 4.9 51 273-323 22-94 (114)
110 2y1n_A E3 ubiquitin-protein li 98.3 1.8E-07 6E-12 99.4 3.7 50 275-324 331-380 (389)
111 4ic3_A E3 ubiquitin-protein li 98.3 1.5E-07 5.1E-12 76.7 1.5 44 275-323 23-67 (74)
112 2bpt_A Importin beta-1 subunit 98.2 2.4E-05 8.1E-10 92.5 18.7 266 372-655 370-669 (861)
113 1w63_A Adapter-related protein 98.2 2.1E-05 7.3E-10 90.2 16.8 144 371-534 107-265 (618)
114 4ap4_A E3 ubiquitin ligase RNF 98.2 3.4E-07 1.2E-11 83.1 0.9 56 273-329 69-131 (133)
115 1w63_A Adapter-related protein 98.1 0.00011 3.9E-09 84.1 21.6 252 370-654 141-414 (618)
116 1qgr_A Protein (importin beta 98.1 7.4E-05 2.5E-09 88.4 20.6 272 372-656 129-439 (876)
117 2ecg_A Baculoviral IAP repeat- 98.1 9.5E-07 3.3E-11 72.1 2.6 45 274-323 23-68 (75)
118 1wim_A KIAA0161 protein; ring 98.1 7.7E-07 2.6E-11 76.0 1.4 66 275-341 4-83 (94)
119 1qgr_A Protein (importin beta 98.0 5.4E-05 1.9E-09 89.6 16.0 270 372-655 367-680 (876)
120 2ecl_A Ring-box protein 2; RNF 98.0 4.1E-06 1.4E-10 69.3 4.0 48 275-323 14-76 (81)
121 2vje_A E3 ubiquitin-protein li 98.0 4.5E-06 1.5E-10 65.8 3.9 48 274-322 6-56 (64)
122 2bpt_A Importin beta-1 subunit 98.0 0.00015 5.3E-09 85.5 18.8 276 372-656 135-442 (861)
123 1u6g_C TIP120 protein, CAND1; 98.0 3.5E-05 1.2E-09 95.4 13.6 268 372-655 7-285 (1230)
124 2vje_B MDM4 protein; proto-onc 97.9 4.7E-06 1.6E-10 65.4 3.5 47 275-322 6-55 (63)
125 1ibr_B P95, importin beta-1 su 97.9 0.00014 4.8E-09 79.0 16.0 262 375-655 5-289 (462)
126 1te4_A Conserved protein MTH18 97.9 3.4E-06 1.2E-10 76.2 2.2 120 371-530 12-131 (131)
127 3b2a_A TON_1937, putative unch 97.9 0.0009 3.1E-08 65.5 19.1 226 369-653 31-260 (265)
128 1u6g_C TIP120 protein, CAND1; 97.8 0.00022 7.4E-09 88.3 16.8 226 370-614 47-288 (1230)
129 2vgl_A Adaptor protein complex 97.8 0.0015 5.2E-08 74.7 22.5 106 371-492 111-218 (621)
130 3t6p_A Baculoviral IAP repeat- 97.8 5.2E-06 1.8E-10 87.6 1.7 46 273-323 292-338 (345)
131 2yho_A E3 ubiquitin-protein li 97.7 5.5E-06 1.9E-10 68.2 0.9 44 275-323 17-61 (79)
132 3dpl_R Ring-box protein 1; ubi 97.7 2E-05 6.9E-10 68.6 4.5 47 275-322 36-100 (106)
133 2iw3_A Elongation factor 3A; a 97.7 0.0017 5.9E-08 77.1 22.1 267 371-657 54-327 (986)
134 3dad_A FH1/FH2 domain-containi 97.7 0.00057 1.9E-08 70.8 14.8 152 373-530 120-284 (339)
135 2qk2_A LP04448P; mini spindles 97.6 0.00034 1.1E-08 69.9 11.3 176 376-569 20-205 (242)
136 2ea5_A Cell growth regulator w 97.6 6.9E-05 2.4E-09 59.7 4.9 46 273-323 12-58 (68)
137 1te4_A Conserved protein MTH18 97.5 4.1E-05 1.4E-09 69.0 2.6 117 413-567 11-128 (131)
138 2d8s_A Cellular modulator of i 97.5 0.00011 3.9E-09 60.4 5.0 51 273-323 12-70 (80)
139 2qk2_A LP04448P; mini spindles 97.4 0.0023 7.7E-08 63.7 14.5 145 372-533 57-206 (242)
140 2vgl_A Adaptor protein complex 97.4 0.0068 2.3E-07 69.3 19.9 248 371-654 329-589 (621)
141 1ho8_A Vacuolar ATP synthase s 97.2 0.11 3.9E-06 56.3 26.4 217 432-653 182-475 (480)
142 2qk1_A Protein STU2; STU2P, XM 97.2 0.0091 3.1E-07 60.0 16.6 187 465-655 21-221 (249)
143 4a0k_B E3 ubiquitin-protein li 97.2 5.4E-05 1.9E-09 66.9 0.0 44 277-321 49-110 (117)
144 3b2a_A TON_1937, putative unch 97.1 0.02 6.8E-07 56.1 17.1 147 370-534 74-220 (265)
145 4ady_A RPN2, 26S proteasome re 96.9 0.046 1.6E-06 64.4 21.3 233 372-653 430-675 (963)
146 3dad_A FH1/FH2 domain-containi 96.8 0.058 2E-06 55.9 18.9 185 431-644 131-326 (339)
147 2qk1_A Protein STU2; STU2P, XM 96.6 0.014 4.7E-07 58.7 12.4 152 372-532 61-220 (249)
148 3tjz_B Coatomer subunit gamma; 96.4 0.043 1.5E-06 57.9 14.8 263 327-646 79-345 (355)
149 3tjz_B Coatomer subunit gamma; 96.4 0.037 1.2E-06 58.5 13.9 241 375-654 72-316 (355)
150 2db0_A 253AA long hypothetical 96.1 0.93 3.2E-05 42.8 21.8 212 414-653 32-245 (253)
151 1ho8_A Vacuolar ATP synthase s 95.9 0.23 7.9E-06 53.9 17.4 231 376-610 172-476 (480)
152 2ct0_A Non-SMC element 1 homol 95.7 0.01 3.6E-07 47.7 4.5 46 277-322 16-63 (74)
153 1vyx_A ORF K3, K3RING; zinc-bi 95.4 0.012 4.2E-07 45.2 4.0 48 275-322 5-58 (60)
154 1wa5_C Importin alpha RE-expor 95.3 0.28 9.7E-06 58.7 17.6 254 387-655 376-671 (960)
155 2iw3_A Elongation factor 3A; a 95.3 0.2 6.9E-06 59.6 15.6 258 373-654 16-280 (986)
156 4ady_A RPN2, 26S proteasome re 95.2 3.1 0.0001 49.2 24.7 233 373-652 474-717 (963)
157 3vk6_A E3 ubiquitin-protein li 95.1 0.015 5.1E-07 48.9 3.8 46 278-323 3-49 (101)
158 3oc3_A Helicase MOT1, MOT1; re 94.8 0.16 5.6E-06 55.8 11.6 245 372-650 175-432 (800)
159 2fv2_A RCD1 required for cell 94.0 0.55 1.9E-05 46.6 12.5 151 388-541 72-233 (268)
160 3k1l_B Fancl; UBC, ring, RWD, 93.9 0.013 4.5E-07 60.5 0.8 48 276-323 308-373 (381)
161 3i2d_A E3 SUMO-protein ligase 93.8 0.041 1.4E-06 57.6 4.3 63 275-337 248-314 (371)
162 2db0_A 253AA long hypothetical 93.0 6.3 0.00021 37.3 21.0 214 369-610 30-246 (253)
163 4ffb_C Protein STU2; tubulin f 92.7 0.88 3E-05 45.8 12.3 184 465-656 14-214 (278)
164 4fo9_A E3 SUMO-protein ligase 92.1 0.13 4.4E-06 53.8 5.0 64 274-337 213-280 (360)
165 2f31_A Diaphanous protein homo 92.0 4 0.00014 40.0 15.8 116 376-493 5-128 (233)
166 3ebb_A Phospholipase A2-activa 91.9 1 3.4E-05 46.4 11.5 149 376-529 152-302 (304)
167 4ffb_C Protein STU2; tubulin f 91.6 1 3.6E-05 45.2 11.3 145 374-533 58-213 (278)
168 3eg5_B Protein diaphanous homo 91.6 4.6 0.00016 42.8 16.7 174 376-554 71-274 (383)
169 2fv2_A RCD1 required for cell 90.5 8.3 0.00028 38.2 15.8 203 373-580 5-232 (268)
170 3ebb_A Phospholipase A2-activa 90.3 2.7 9.2E-05 43.1 12.9 164 373-543 105-274 (304)
171 2jun_A Midline-1; B-BOX, TRIM, 90.1 0.12 4.1E-06 43.9 2.1 33 275-307 2-37 (101)
172 2bnx_A Diaphanous protein homo 87.6 13 0.00045 39.3 16.4 175 376-552 9-211 (386)
173 1wa5_C Importin alpha RE-expor 87.0 7.9 0.00027 46.1 15.9 130 476-611 376-526 (960)
174 2x19_B Importin-13; nuclear tr 86.1 21 0.00072 42.1 19.0 154 385-553 462-621 (963)
175 2f31_A Diaphanous protein homo 85.9 17 0.0006 35.3 15.2 161 460-644 43-218 (233)
176 2x1g_F Cadmus; transport prote 85.5 8.6 0.00029 45.7 15.2 209 385-610 477-722 (971)
177 2of3_A ZYG-9; multifunctional 85.5 9.5 0.00033 38.2 13.0 174 375-567 50-231 (266)
178 3eg5_B Protein diaphanous homo 84.9 19 0.00067 37.9 15.9 165 453-643 104-283 (383)
179 2of3_A ZYG-9; multifunctional 84.8 3.2 0.00011 41.7 9.2 134 382-533 98-237 (266)
180 3u0r_A Apoptosis inhibitor 5; 83.5 9.4 0.00032 41.3 12.5 92 382-491 39-130 (507)
181 2x1g_F Cadmus; transport prote 83.4 33 0.0011 40.5 19.0 171 474-654 477-663 (971)
182 3nw0_A Non-structural maintena 82.6 1.1 3.7E-05 44.4 4.6 48 277-324 181-230 (238)
183 3u0r_A Apoptosis inhibitor 5; 79.7 17 0.00057 39.4 12.7 116 471-606 39-159 (507)
184 1vdy_A Hypothetical protein (R 78.9 2.9 0.0001 37.6 5.7 75 583-657 51-133 (140)
185 3c2g_A SYS-1 protein; beta-cat 78.6 31 0.001 35.8 13.5 109 442-554 266-377 (619)
186 2bnx_A Diaphanous protein homo 77.9 47 0.0016 34.9 15.8 161 460-644 47-222 (386)
187 2kkx_A Uncharacterized protein 77.8 1.8 6.2E-05 36.1 3.6 52 273-325 24-81 (102)
188 3c2g_A SYS-1 protein; beta-cat 74.7 35 0.0012 35.4 12.7 111 396-513 266-377 (619)
189 3oc3_A Helicase MOT1, MOT1; re 73.8 7.3 0.00025 43.1 7.9 185 386-604 242-430 (800)
190 4hat_C Exportin-1; heat repeat 71.8 18 0.00061 43.4 11.8 145 385-534 466-620 (1023)
191 3ldz_A STAM-1, signal transduc 69.7 13 0.00044 33.3 7.6 72 582-654 43-114 (140)
192 1mhq_A ADP-ribosylation factor 67.3 14 0.00046 33.5 7.3 78 369-447 36-116 (148)
193 2x19_B Importin-13; nuclear tr 66.6 1E+02 0.0035 36.1 17.0 171 473-654 461-646 (963)
194 1x5b_A Signal transducing adap 65.0 11 0.00037 34.7 6.3 75 369-447 50-125 (163)
195 1upk_A MO25 protein; transfera 64.8 83 0.0028 32.4 13.3 191 371-567 78-278 (341)
196 1x5b_A Signal transducing adap 64.8 18 0.00061 33.3 7.7 72 582-654 53-125 (163)
197 3m1i_C Exportin-1; heat repeat 64.7 42 0.0014 40.2 13.1 143 385-532 466-618 (1049)
198 1weo_A Cellulose synthase, cat 63.1 8.1 0.00028 31.5 4.2 48 275-322 15-69 (93)
199 1mhq_A ADP-ribosylation factor 62.5 17 0.00059 32.8 7.0 72 582-654 39-116 (148)
200 1juq_A ADP-ribosylation factor 62.1 13 0.00044 34.5 6.2 77 370-447 49-128 (171)
201 4hat_C Exportin-1; heat repeat 60.6 15 0.00052 44.1 8.1 99 431-533 466-570 (1023)
202 3g2s_A C-terminal fragment of 59.8 24 0.00083 31.9 7.5 72 582-654 49-126 (149)
203 3ldz_A STAM-1, signal transduc 57.1 15 0.00051 32.9 5.5 74 369-447 40-114 (140)
204 1juq_A ADP-ribosylation factor 56.9 21 0.00071 33.1 6.7 72 582-654 51-128 (171)
205 1upk_A MO25 protein; transfera 56.7 1.8E+02 0.0062 29.9 16.9 198 453-654 72-283 (341)
206 2kre_A Ubiquitin conjugation f 55.9 6.6 0.00023 33.0 2.8 34 275-310 62-95 (100)
207 3l9t_A Putative uncharacterize 54.6 1.4E+02 0.0046 29.2 12.2 139 376-542 75-218 (240)
208 3g2s_A C-terminal fragment of 54.5 29 0.00099 31.4 7.0 78 369-447 46-126 (149)
209 1lrv_A LRV, leucine-rich repea 53.3 9.1 0.00031 37.8 3.8 18 376-394 79-96 (244)
210 3mjh_B Early endosome antigen 52.1 3 0.0001 27.9 -0.0 15 276-290 5-19 (34)
211 3zyq_A Hepatocyte growth facto 50.6 27 0.00093 33.8 6.7 72 582-654 46-118 (226)
212 3zyq_A Hepatocyte growth facto 50.3 40 0.0014 32.6 7.8 72 414-490 45-118 (226)
213 3m1i_C Exportin-1; heat repeat 49.6 1.9E+02 0.0066 34.3 15.4 197 431-650 29-259 (1049)
214 3rkv_A Putative peptidylprolyl 47.5 1.4E+02 0.0047 25.8 10.8 110 50-163 22-148 (162)
215 2jvx_A NF-kappa-B essential mo 47.3 4.7 0.00016 25.6 0.3 17 274-290 1-17 (28)
216 1lrv_A LRV, leucine-rich repea 47.0 9.1 0.00031 37.8 2.6 20 375-395 102-121 (244)
217 1dvp_A HRS, hepatocyte growth 46.0 32 0.0011 33.1 6.4 72 414-490 42-115 (220)
218 1wgm_A Ubiquitin conjugation f 43.5 11 0.00039 31.4 2.3 32 276-309 57-88 (98)
219 1dvp_A HRS, hepatocyte growth 43.1 41 0.0014 32.3 6.6 72 582-654 43-115 (220)
220 3pst_A Protein DOA1; protein d 38.9 1.1E+02 0.0037 32.6 9.4 132 389-535 243-392 (425)
221 3gae_A Protein DOA1; UFD3, CDC 38.6 51 0.0018 32.5 6.6 134 388-537 70-222 (253)
222 2jne_A Hypothetical protein YF 38.2 8.3 0.00028 32.0 0.5 41 277-323 33-73 (101)
223 1elk_A Target of MYB1; superhe 37.3 67 0.0023 29.1 6.7 77 369-447 51-130 (157)
224 2kr4_A Ubiquitin conjugation f 37.2 12 0.00041 30.2 1.4 32 276-309 48-79 (85)
225 1lsh_A Lipovitellin (LV-1N, LV 36.8 4.2E+02 0.014 31.6 15.5 132 373-534 442-578 (1056)
226 3q49_B STIP1 homology and U bo 36.7 60 0.0021 26.9 6.1 52 112-163 81-132 (137)
227 1elk_A Target of MYB1; superhe 35.9 84 0.0029 28.4 7.1 72 582-654 54-130 (157)
228 3l3f_X Protein DOA1, DOA1/UFD3 34.3 87 0.003 32.6 7.7 131 389-534 180-328 (362)
229 6rxn_A Rubredoxin; electron tr 34.2 12 0.00042 26.7 0.9 13 272-284 26-38 (46)
230 3a6p_A Exportin-5; exportin-5, 32.2 7.5E+02 0.026 29.8 17.9 127 385-532 26-162 (1204)
231 3qml_C Protein SLS1, nucleotid 30.3 4.4E+02 0.015 26.6 12.3 146 462-609 24-188 (315)
232 4rxn_A Rubredoxin; electron tr 30.1 16 0.00054 27.1 0.9 14 272-285 32-45 (54)
233 4abx_A DNA repair protein RECN 29.9 3.2E+02 0.011 24.8 14.7 148 56-224 8-159 (175)
234 1e8j_A Rubredoxin; iron-sulfur 29.2 19 0.00064 26.4 1.1 14 272-285 32-45 (52)
235 1t1h_A Gspef-atpub14, armadill 28.5 36 0.0012 26.4 2.9 32 276-309 43-74 (78)
236 2ko5_A Ring finger protein Z; 27.8 39 0.0014 27.9 2.9 51 272-324 24-74 (99)
237 2kw6_A Cyclin-dependent kinase 25.7 32 0.0011 26.1 1.9 39 64-106 15-56 (65)
238 1yk4_A Rubredoxin, RD; electro 25.4 21 0.00073 26.1 0.9 13 272-284 31-43 (52)
239 2kn9_A Rubredoxin; metalloprot 25.2 23 0.0008 28.5 1.1 14 272-285 56-69 (81)
240 2v3b_B Rubredoxin 2, rubredoxi 24.4 22 0.00076 26.3 0.8 14 272-285 32-45 (55)
241 2yru_A Steroid receptor RNA ac 23.6 3.5E+02 0.012 23.1 9.1 54 49-113 32-85 (118)
242 3gae_A Protein DOA1; UFD3, CDC 23.4 2.5E+02 0.0086 27.4 8.6 111 385-499 103-226 (253)
243 3rf3_A Vinculin, metavinculin; 22.7 3.1E+02 0.011 26.9 9.1 83 53-141 152-254 (258)
244 1dx8_A Rubredoxin; electron tr 22.6 25 0.00087 27.4 0.9 14 272-285 36-49 (70)
245 2m1l_A Cyclin-dependent kinase 22.1 42 0.0014 25.8 1.9 41 64-106 19-60 (69)
246 2nz7_A NOD1, caspase recruitme 21.7 1.2E+02 0.004 25.2 4.9 77 50-137 14-91 (98)
247 2f42_A STIP1 homology and U-bo 21.5 33 0.0011 32.0 1.5 31 278-310 143-173 (179)
248 1s24_A Rubredoxin 2; electron 20.4 30 0.001 28.2 0.9 14 272-285 64-77 (87)
249 1m3v_A FLIN4, fusion of the LI 20.3 61 0.0021 27.8 3.0 51 275-326 31-84 (122)
250 2jrp_A Putative cytoplasmic pr 20.2 42 0.0014 27.0 1.7 41 277-323 3-43 (81)
No 1
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=3.2e-29 Score=279.04 Aligned_cols=276 Identities=17% Similarity=0.168 Sum_probs=235.2
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-ch
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EA 450 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~ 450 (683)
.++.||.+|.++ +++.|..|++.|++++.+++.++..+++.|+||.|+.+|+++ ++.+|+.|+++|.||+.+ ++
T Consensus 3 ~l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~----~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHH
Confidence 578899999999 999999999999999988887898999999999999999998 999999999999999987 89
Q ss_pred hHHHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc--------CC------
Q 048793 451 NKTRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK--------GG------ 515 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~--------~~------ 515 (683)
+|..|++. |+|+.|+++|+ ++ +.+.++.|+++|++|+..++++..++. |++|+|+.+|. ++
T Consensus 78 ~k~~i~~~-G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 78 NKLETRRQ-NGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHT-TCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHc-CCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcc
Confidence 99999998 99999999999 77 799999999999999999889998885 99999999993 22
Q ss_pred --ChhHHHHHHHHHHHhcCCcchhHHHHhc-CchHHHHHHhcc-------CchhHHHHHHHHHHcCCcHHH---------
Q 048793 516 --PTSSKRDALVAILNLAGDRETVGRLVER-GIVEIVAEAMDV-------LPEESVTILEAVVKRGGLTAI--------- 576 (683)
Q Consensus 516 --~~~~~~~A~~aL~nLs~~~~n~~~iv~a-G~V~~Lv~lL~~-------~~~~~~~aL~~L~~l~~~~e~--------- 576 (683)
+..+.++|+++|+|||.+++++..++++ |++++|+.+|.+ +....+.+++.|.+++...+.
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 2345569999999999998899999998 999999999973 234578888888776522110
Q ss_pred ---------------------------------------------HHHcCchHHHHHHHhc-CChHHHHHHHHHHHHHHh
Q 048793 577 ---------------------------------------------VAAYNTIKKLCILLRE-GSDTSRESAAATLVTICR 610 (683)
Q Consensus 577 ---------------------------------------------~~~~g~v~~Lv~lL~~-~s~~~ke~A~~aL~~L~~ 610 (683)
....|.++.|+.+|.. .++..++.|+++|++||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 0012446778888875 468999999999999998
Q ss_pred cCCch--HH-HHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 611 KGGSE--MV-ADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 611 ~~~~~--~~-~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
+.... .. +.++.+.|+++.|+.|+.+++.++++.|+|+|+++....
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 65432 22 445667899999999999999999999999999998843
No 2
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=2.1e-28 Score=276.38 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=237.1
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL- 448 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~- 448 (683)
.+.++.||.+|.++ +++.|..|++.|++++..++++|..|++.|+||.||.+|.++ +..+|++|+++|.||+.+
T Consensus 47 ~~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~----~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 47 QPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP----KKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS----SHHHHHHHHHHHHHHTSSS
T ss_pred cccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC----CHHHHHHHHHHHHHHHccC
Confidence 35688999999999 999999999999999998889999999999999999999999 999999999999999984
Q ss_pred -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc--------------
Q 048793 449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK-------------- 513 (683)
Q Consensus 449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~-------------- 513 (683)
++||..|++. |+|++||.+|+++.+.+++++|+++|++||..++++..|+. |+|++|+++|.
T Consensus 122 ~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 122 DQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp CHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC-------
T ss_pred CHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccc
Confidence 7999999998 99999999999854789999999999999999999999985 57999999872
Q ss_pred ----CCChhHHHHHHHHHHHhcCCcc-hhHHHHhc-CchHHHHHHhcc-------CchhHHHHHHHHHHcCCcHHHHH--
Q 048793 514 ----GGPTSSKRDALVAILNLAGDRE-TVGRLVER-GIVEIVAEAMDV-------LPEESVTILEAVVKRGGLTAIVA-- 578 (683)
Q Consensus 514 ----~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~a-G~V~~Lv~lL~~-------~~~~~~~aL~~L~~l~~~~e~~~-- 578 (683)
..+..++++|+++|+||+.+.+ ++..++++ |+|++||.+|.+ +...++.|+++|.+++.+.+...
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~ 278 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence 1235788999999999999875 59999885 667899999963 23458889999988775432110
Q ss_pred ------------------Hc---------CchHHHHHHHhc-CChHHHHHHHHHHHHHHhcCCc--hHHHHHHhcCCcHH
Q 048793 579 ------------------AY---------NTIKKLCILLRE-GSDTSRESAAATLVTICRKGGS--EMVADIAAVPGIER 628 (683)
Q Consensus 579 ------------------~~---------g~v~~Lv~lL~~-~s~~~ke~A~~aL~~L~~~~~~--~~~~~~~~~~G~~~ 628 (683)
.. +.++.|+.+|.. .++.++|+|+++|++||.+... ...+..+.+.|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 11 235567888864 5799999999999999986532 23345677789999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 629 VIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 629 ~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
.|+.|+.++++++++.|.++|++|....
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 9999999999999999999999999854
No 3
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=5.1e-29 Score=267.36 Aligned_cols=266 Identities=20% Similarity=0.154 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCC-------CCCCChhhHHHHHHHHHhcccCch-hHHHHhc
Q 048793 386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD-------TASRLPNLQVNAVTTILNLSILEA-NKTRIME 457 (683)
Q Consensus 386 ~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~-------~~~~d~~~qe~A~~aL~nLs~~~~-~k~~I~~ 457 (683)
.+.+..|+++|.+++.+ +++|..|++.|++|.|+.+|.+. ....++.+|++|+++|.||+.+++ +|..|..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566899999999987 57999999999999999999521 000146799999999999998764 7777765
Q ss_pred ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhh-cCCChhHHHHHHHHHHHhcC-C
Q 048793 458 TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDALVAILNLAG-D 533 (683)
Q Consensus 458 ~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~ 533 (683)
..|+|+.||.+|+++ +.++++.|+++|++|+.. +++|..|++ .|+|++||++| ++++...++.|+.+|+||+. +
T Consensus 125 ~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 125 MKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 437799999999988 799999999999999985 568999988 89999999975 66778899999999999999 6
Q ss_pred cchhHHHH-hcCchHHHHHHhccCc-----hhHHHHHHHHHHcC----CcHHHHH---HcCchHHHHHHHhcCChHHHHH
Q 048793 534 RETVGRLV-ERGIVEIVAEAMDVLP-----EESVTILEAVVKRG----GLTAIVA---AYNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 534 ~~n~~~iv-~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~----~~~e~~~---~~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
++|+..++ .+|+|+.|+++|.... +..+.|.++|.+++ ++++.+. ..|+++.|+.+|++++..++++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 68998888 7999999999998542 35777888887766 4666544 3588999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
|+++|++|+..+ ...++.+.+.|+++.|+.|+.++++++++.|++.|++|....
T Consensus 283 A~~aL~nLa~~~--~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 283 ACGTLWNLSARN--PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHTSSC--HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999743 334566788999999999999999999999999999999863
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=4e-28 Score=268.17 Aligned_cols=263 Identities=20% Similarity=0.158 Sum_probs=221.6
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCC-------CCCCChhhHHHHHHHHHhcccCch-hHHHHhcccC
Q 048793 389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD-------TASRLPNLQVNAVTTILNLSILEA-NKTRIMETEG 460 (683)
Q Consensus 389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~-------~~~~d~~~qe~A~~aL~nLs~~~~-~k~~I~~~~G 460 (683)
+..|+++|.+++.+ ++||..|.+.|++++|+.+|... ....++.++++|+++|.||+.+++ ++..|....|
T Consensus 165 ~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 34999999999775 67999999999999999999421 000146789999999999998765 6767754437
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhh-cCCChhHHHHHHHHHHHhcC-Ccch
Q 048793 461 ALNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDALVAILNLAG-DRET 536 (683)
Q Consensus 461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n 536 (683)
+|+.||.+|+++ +.++++.|+++|.+|+.. +++|..|++ .|+|++||++| .+++...++.|+.+|+||+. +++|
T Consensus 244 aIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 244 CMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 799999999988 799999999999999985 568899988 89999999975 55678899999999999999 7789
Q ss_pred hHHHH-hcCchHHHHHHhccCc-----hhHHHHHHHHHHcC----CcHHHHH---HcCchHHHHHHHhcCChHHHHHHHH
Q 048793 537 VGRLV-ERGIVEIVAEAMDVLP-----EESVTILEAVVKRG----GLTAIVA---AYNTIKKLCILLREGSDTSRESAAA 603 (683)
Q Consensus 537 ~~~iv-~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~----~~~e~~~---~~g~v~~Lv~lL~~~s~~~ke~A~~ 603 (683)
+..++ .+|++++|+++|.... +..+.|.++|.+++ ++++.+. ..|+++.|+.+|++++..++++|++
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~ 401 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 401 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHH
Confidence 99998 7999999999998532 35777888887766 4665543 4589999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
+|++|+..+ ...+..+.+.|++++|+.|+.++++++++.|++.|++|....
T Consensus 402 aL~nLa~~~--~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 402 TLWNLSARN--PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHSSC--HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999743 334566778899999999999999999999999999998754
No 5
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=3.6e-27 Score=253.00 Aligned_cols=249 Identities=12% Similarity=0.102 Sum_probs=213.7
Q ss_pred chhhhHHHhhhhHHHHHHHhccC----------CCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCC
Q 048793 361 TNKAALEATKMTASFLINKLATS----------QSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTAS 429 (683)
Q Consensus 361 ~~~~~i~~~~~~i~~Lv~~L~s~----------~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~ 429 (683)
++|..+. ..|+++.|+.+|.+. .+++.|..|+++|.+++..++.+|..+.. .|+||.|+.+|+++
T Consensus 64 e~R~~i~-~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~--- 139 (354)
T 3nmw_A 64 EHRHAMN-ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE--- 139 (354)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS---
T ss_pred HHHHHHH-HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC---
Confidence 3455554 678999999999521 14678999999999999988878988865 56799999999998
Q ss_pred CChhhHHHHHHHHHhcccC--chhHHHHhcccCcHHHHHHHH-hcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccH
Q 048793 430 RLPNLQVNAVTTILNLSIL--EANKTRIMETEGALNGVIEVL-RSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVV 505 (683)
Q Consensus 430 ~d~~~qe~A~~aL~nLs~~--~~~k~~I~~~~G~I~~Lv~lL-~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i 505 (683)
+.++++.|+++|.||+.+ +++|..|++. |+|++||++| +++ +.+.++.|+++|++|+. .++++..|+...|+|
T Consensus 140 -~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai 216 (354)
T 3nmw_A 140 -SEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGAL 216 (354)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHH
T ss_pred -CHHHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcH
Confidence 999999999999999974 5789999988 9999999986 455 78999999999999999 678999998448999
Q ss_pred HHHHHhhcCCCh----hHHHHHHHHHHHhcC----CcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC-CcHH
Q 048793 506 KGLMDLVKGGPT----SSKRDALVAILNLAG----DRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG-GLTA 575 (683)
Q Consensus 506 ~~Lv~lL~~~~~----~~~~~A~~aL~nLs~----~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~-~~~e 575 (683)
+.|+++|.++++ .++++|+++|+||+. +++++..++++|++++|+++|.++ .+..+.|+++|.+++ ++++
T Consensus 217 ~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 296 (354)
T 3nmw_A 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 296 (354)
T ss_dssp HHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH
Confidence 999999987764 488999999999995 788999999999999999999865 345889999999988 4555
Q ss_pred HH---HHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchH
Q 048793 576 IV---AAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEM 616 (683)
Q Consensus 576 ~~---~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~ 616 (683)
.+ ...|+++.|+.+|.+++++++++|+++|.+|+.+.+...
T Consensus 297 ~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 297 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 44 445999999999999999999999999999999877643
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=1.2e-26 Score=258.26 Aligned_cols=278 Identities=15% Similarity=0.088 Sum_probs=228.6
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
..|+|+.||++|+++ +++.+..|+++|++++.+++++|..|++.|+||.|+.+|. ++ ++++++.|+++|.||+.
T Consensus 42 ~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~----~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 42 QLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG----NAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC----CHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC----CHHHHHHHHHHHHHHhc
Confidence 678999999999998 9999999999999999988899999999999999999999 77 89999999999999999
Q ss_pred CchhHHHHhcccCcHHHHHHHHh--------cC-------CCHHHHHHHHHHHHHhhcCcchhhHHhhhc-ccHHHHHHh
Q 048793 448 LEANKTRIMETEGALNGVIEVLR--------SG-------ATWEAKGNAAATIFSLSGVHAHRKTLGRKT-RVVKGLMDL 511 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~--------~~-------~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~-G~i~~Lv~l 511 (683)
++++|..|++ |+++.|+.+|. ++ .+.+..++|+++|+||+..++++..+.+ . |++++|+.+
T Consensus 117 ~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~l 193 (457)
T 1xm9_A 117 TDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAY 193 (457)
T ss_dssp SSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHH
T ss_pred CHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHH
Confidence 9889988886 89999999993 22 1345666999999999999889999887 6 999999988
Q ss_pred hcCC----------------------------------------------------------------------------
Q 048793 512 VKGG---------------------------------------------------------------------------- 515 (683)
Q Consensus 512 L~~~---------------------------------------------------------------------------- 515 (683)
|.++
T Consensus 194 L~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (457)
T 1xm9_A 194 VQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273 (457)
T ss_dssp HHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSC
T ss_pred HHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCc
Confidence 8631
Q ss_pred -----------------------ChhHHHHHHHHHHHhcCCcch------hHHHHhcCchHHHHHHhccCc-hhHHHHHH
Q 048793 516 -----------------------PTSSKRDALVAILNLAGDRET------VGRLVERGIVEIVAEAMDVLP-EESVTILE 565 (683)
Q Consensus 516 -----------------------~~~~~~~A~~aL~nLs~~~~n------~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~ 565 (683)
++..++.|+++|.||+..... +..+.++|++|.|+++|.++. +....|++
T Consensus 274 ~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~ 353 (457)
T 1xm9_A 274 KGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGAS 353 (457)
T ss_dssp CGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHH
Confidence 123456688999999875432 223346899999999998653 45777788
Q ss_pred HHHHcCCcHHHHH--HcCchHHHHHHHhcCCh------HHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC
Q 048793 566 AVVKRGGLTAIVA--AYNTIKKLCILLREGSD------TSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG 637 (683)
Q Consensus 566 ~L~~l~~~~e~~~--~~g~v~~Lv~lL~~~s~------~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~ 637 (683)
.|.+++.+.+... ..|+++.|+.+|..+++ .+...++++|.++..++++ ....+.+.|+++.|+.|+.++
T Consensus 354 aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~--~~~~i~~~g~l~~L~~L~~~~ 431 (457)
T 1xm9_A 354 LLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ--LAKQYFSSSMLNNIINLCRSS 431 (457)
T ss_dssp HHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH--HHHHHCCHHHHHHHHHHHHCT
T ss_pred HHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH--HHHHHHHcCCHHHHHHHHcCC
Confidence 8887765544332 23789999999987643 5777899999999886543 456688899999999999999
Q ss_pred -CHHHHHHHHHHHHHHHhhh
Q 048793 638 -TARARRKAAALLRILRRWA 656 (683)
Q Consensus 638 -~~~~k~kA~~lL~~l~~~~ 656 (683)
+++++++|.++|.++-.+.
T Consensus 432 ~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 432 ASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp TCHHHHHHHHHHHHTTSSST
T ss_pred CcHHHHHHHHHHHHHHHcch
Confidence 9999999999999876544
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=4.1e-26 Score=265.83 Aligned_cols=287 Identities=13% Similarity=0.145 Sum_probs=242.9
Q ss_pred chhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-----------------------------hhH---H
Q 048793 361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-----------------------------DSR---A 408 (683)
Q Consensus 361 ~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-----------------------------~nr---~ 408 (683)
..+..+....|.++.||.+|+++ +...+..|++.|.+++.+.+ .++ .
T Consensus 411 ~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~ 489 (810)
T 3now_A 411 ECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT 489 (810)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence 34445555678999999999998 89999999999999998652 123 6
Q ss_pred HHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 048793 409 CIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSL 488 (683)
Q Consensus 409 ~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~L 488 (683)
.++++|+||.|+.+|+++ ++.+|+.|+++|.||+.+++++..|++. |++++|+.+|+++ +...+++|+++|.+|
T Consensus 490 ~VveaGaVp~LV~LL~s~----s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~-Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL 563 (810)
T 3now_A 490 VLANEGITTALCALAKTE----SHNSQELIARVLNAVCGLKELRGKVVQE-GGVKALLRMALEG-TEKGKRHATQALARI 563 (810)
T ss_dssp HHHHTTHHHHHHHHHTCC----CHHHHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 788999999999999999 9999999999999999998999999998 9999999999999 699999999999999
Q ss_pred hcCcchhhHHh--hhcccHHHHHHhhcCCCh-hHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHH
Q 048793 489 SGVHAHRKTLG--RKTRVVKGLMDLVKGGPT-SSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTI 563 (683)
Q Consensus 489 s~~~~~~~~i~--~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~a 563 (683)
+...+....+. ...|+||+|+.+|.++.. ..+.+|++||.||+.++ +++..++++|+++.|+++|.++ ......|
T Consensus 564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A 643 (810)
T 3now_A 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643 (810)
T ss_dssp HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence 97654443332 125799999999986533 44578999999999974 6899999999999999999864 4568889
Q ss_pred HHHHHHcCCcHHHHHH----cCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCH
Q 048793 564 LEAVVKRGGLTAIVAA----YNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTA 639 (683)
Q Consensus 564 L~~L~~l~~~~e~~~~----~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~ 639 (683)
+..|++++.+++.... .|.++.|+.++...+..+++.|+++|.+|+.++. ...+.++...|+++.|+.|+.+++.
T Consensus 644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~-~~~~~ii~~~g~I~~Lv~LL~s~d~ 722 (810)
T 3now_A 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV-KCCEKILAIASWLDILHTLIANPSP 722 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH-HHHHHHHTSTTHHHHHHHHHTCSSH
T ss_pred HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHHcCCHHHHHHHHCCCCH
Confidence 9999998877665433 3679999999999999999999999999998543 3445555448999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 048793 640 RARRKAAALLRILRRW 655 (683)
Q Consensus 640 ~~k~kA~~lL~~l~~~ 655 (683)
++|+.|.|.|.++...
T Consensus 723 ~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 723 AVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999763
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=4.3e-26 Score=251.93 Aligned_cols=284 Identities=17% Similarity=0.121 Sum_probs=232.1
Q ss_pred hhhhHHHHHHHhccC-----------CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcH----------HHHHHhhCCCC
Q 048793 369 TKMTASFLINKLATS-----------QSMEAANDAVYELRSLSKTDSDSRACIAEAGAI----------ALLARHLGPDT 427 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~-----------~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~I----------p~Lv~lL~s~~ 427 (683)
..|.+|.||++|... .+++.+.+|+|+|.+++...++......+.|++ +.+++++.+..
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 579999999999863 147999999999999999999888888888988 77788888762
Q ss_pred CCCC---hhhHH-------HHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcC----------CCHHHHHHHHHHHHH
Q 048793 428 ASRL---PNLQV-------NAVTTILNLSILEANKTRIMETEGALNGVIEVLRSG----------ATWEAKGNAAATIFS 487 (683)
Q Consensus 428 ~~~d---~~~qe-------~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~----------~~~~~~~~Aa~~L~~ 487 (683)
...+ ..+++ .|+++|.|++.++++|..|++. |++++|+.+|... .++..+++|+++|.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 1111 01333 8999999999999999999998 9999999999521 136789999999999
Q ss_pred hhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC--cchhHHHHhcCchHHHHHHhcc-C-chhHHH
Q 048793 488 LSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD--RETVGRLVERGIVEIVAEAMDV-L-PEESVT 562 (683)
Q Consensus 488 Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~aG~V~~Lv~lL~~-~-~~~~~~ 562 (683)
|+..++ ++..+....|+||+||.+|.++++++++.|+++|.||+.. ++|+..++++|+|++|+++|.. . .+..+.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 998776 7777755467799999999999999999999999999985 5689999999999999998643 3 345667
Q ss_pred HHHHHHHcCC-cHHH---HH-HcCchHHHHHHHhcCCh----HHHHHHHHHHHHHHhc--CCchHHHHHHhcCCcHHHHH
Q 048793 563 ILEAVVKRGG-LTAI---VA-AYNTIKKLCILLREGSD----TSRESAAATLVTICRK--GGSEMVADIAAVPGIERVIW 631 (683)
Q Consensus 563 aL~~L~~l~~-~~e~---~~-~~g~v~~Lv~lL~~~s~----~~ke~A~~aL~~L~~~--~~~~~~~~~~~~~G~~~~L~ 631 (683)
++.+|.+++. +.+. +. ..|+++.|+.+|..+++ ..+++|+++|++|+.+ ... ..++.+.+.|+++.|+
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-DHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHcccHHHHH
Confidence 7777777665 4332 22 45899999999987665 4899999999999962 223 3456678899999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHh
Q 048793 632 ELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 632 ~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.++.+++..+++.|+++|.++..
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHcCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999999984
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1e-25 Score=254.23 Aligned_cols=280 Identities=14% Similarity=0.128 Sum_probs=240.4
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..|.||.||++|+++.+++.|..|+|+|.+++.++++++..+++.|+||.|+.+|.++ +..+++.|+++|.||+.+
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~----~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP----HAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhC
Confidence 4689999999998653789999999999999999999999999999999999999999 999999999999999987
Q ss_pred c-hhHHHHhcccCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793 449 E-ANKTRIMETEGALNGVIEVLRSGA----TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~----~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A 523 (683)
. +.+..+... |++++|+.+|.+.. ....+.+++++|.+++........+....|++|.|+.+|.+++++++..|
T Consensus 174 ~~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 174 GSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp CHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CHHHHHHHHHc-CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 4 567777787 99999999998642 24578899999999999877666655557999999999999999999999
Q ss_pred HHHHHHhcCCcchh-HHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHH---HHHHcCchHHHHHHHhcCChHH
Q 048793 524 LVAILNLAGDRETV-GRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTA---IVAAYNTIKKLCILLREGSDTS 597 (683)
Q Consensus 524 ~~aL~nLs~~~~n~-~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e---~~~~~g~v~~Lv~lL~~~s~~~ 597 (683)
+++|.+|+.+..++ ..++++|+++.|+++|.+. ......++.+|.+++. ..+ .+...|+++.|+.+|.+.++.+
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v 332 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence 99999999987654 5567899999999999864 4457788888888764 333 3345589999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 598 ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
++.|+++|.+|+.++. .....+.+.|+++.|+.++.+++.++|+.|+++|.++...
T Consensus 333 ~~~A~~aL~nl~a~~~--~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcH--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 9999999999998643 3456677899999999999999999999999999998763
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=2.1e-25 Score=252.77 Aligned_cols=280 Identities=14% Similarity=0.137 Sum_probs=242.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..|.||.||++|..+.+++.|..|+++|.+++.++++++..+++.|+||.|+.+|.++ +..+++.|+++|.||+.+
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~----~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP----HAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcc
Confidence 4689999999997653799999999999999999998999999999999999999999 999999999999999986
Q ss_pred -chhHHHHhcccCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793 449 -EANKTRIMETEGALNGVIEVLRSGA----TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 449 -~~~k~~I~~~~G~I~~Lv~lL~~~~----~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A 523 (683)
++++..+... |++++|+.+|.... ......+++++|.+++........+....|++|.|+.+|.+++++++.+|
T Consensus 193 ~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a 271 (529)
T 3tpo_A 193 GSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 271 (529)
T ss_dssp CHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHH
Confidence 5678888887 99999999997542 24578899999999999877666655557999999999999999999999
Q ss_pred HHHHHHhcCCcch-hHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHH
Q 048793 524 LVAILNLAGDRET-VGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTS 597 (683)
Q Consensus 524 ~~aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~ 597 (683)
+++|.+|+.+..+ ...++++|+++.|+++|.+. ......++.+|.+++. +.+. +...|+++.|+.+|.+.++.+
T Consensus 272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence 9999999998765 45567899999999999864 4457788888888764 3333 344589999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 598 ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
++.|+++|.+|+.++. .....+.+.|+++.|+.++.+++.++++.|+++|.++...
T Consensus 352 ~~~a~~aL~nl~~~~~--~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 352 QKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccH--HHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999998653 3456677899999999999999999999999999998763
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=4.3e-25 Score=249.35 Aligned_cols=283 Identities=18% Similarity=0.153 Sum_probs=221.2
Q ss_pred hhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhcc-CchhHHHHHHhCcHHHHHHhhCC-CCCCCChhhHHHHH
Q 048793 362 NKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKT-DSDSRACIAEAGAIALLARHLGP-DTASRLPNLQVNAV 439 (683)
Q Consensus 362 ~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~-~~~nr~~i~~~G~Ip~Lv~lL~s-~~~~~d~~~qe~A~ 439 (683)
++..+. ..|+|+.||++|.++ +.++|..|+++|++|+.+ +++||..|+++|+||.|+.+|.+ . +.+++++|+
T Consensus 82 ~k~~V~-~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~----~~~~~e~aa 155 (584)
T 3l6x_A 82 VKTDVR-KLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR----DMDLTEVIT 155 (584)
T ss_dssp HHHHHH-HTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC----SHHHHHHHH
T ss_pred HHHHHH-HcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC----CHHHHHHHH
Confidence 344444 578999999999999 999999999999999985 67899999999999999999997 4 788999999
Q ss_pred HHHHhcccCchhHHHHhcccCcHHHHHHHHh-----------------cCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhh
Q 048793 440 TTILNLSILEANKTRIMETEGALNGVIEVLR-----------------SGATWEAKGNAAATIFSLSGVHA-HRKTLGRK 501 (683)
Q Consensus 440 ~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~-----------------~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~ 501 (683)
.+|+|||.++++|..|+. |+|+.|+++|. +..+.+++++|+++|+||+..++ +|..|+..
T Consensus 156 ~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~ 233 (584)
T 3l6x_A 156 GTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC 233 (584)
T ss_dssp HHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS
T ss_pred HHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 999999999999999995 56999999872 11147899999999999998765 58888875
Q ss_pred cccHHHHHHhhcC------CChh---------------------------------------------------------
Q 048793 502 TRVVKGLMDLVKG------GPTS--------------------------------------------------------- 518 (683)
Q Consensus 502 ~G~i~~Lv~lL~~------~~~~--------------------------------------------------------- 518 (683)
.|+|++||.+|++ .+..
T Consensus 234 ~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~L 313 (584)
T 3l6x_A 234 DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313 (584)
T ss_dssp TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHH
T ss_pred CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHH
Confidence 6777788887653 1223
Q ss_pred -----------HHHHHHHHHHHhcCCc-----chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC---CcHHHHH
Q 048793 519 -----------SKRDALVAILNLAGDR-----ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG---GLTAIVA 578 (683)
Q Consensus 519 -----------~~~~A~~aL~nLs~~~-----~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~---~~~e~~~ 578 (683)
+++.|++||.|||.+. .++..+.+.|+++.|+++|... .+....|+++|.+++ .+.+.+
T Consensus 314 l~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I- 392 (584)
T 3l6x_A 314 ISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI- 392 (584)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-
Confidence 3445555555555432 1223334578899999999754 344555666665554 444444
Q ss_pred HcCchHHHHHHHhcC--------ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHH
Q 048793 579 AYNTIKKLCILLREG--------SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG--TARARRKAAAL 648 (683)
Q Consensus 579 ~~g~v~~Lv~lL~~~--------s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~kA~~l 648 (683)
..|+++.||.+|..+ +..+...|+++|.+|+..+. ...+.+.+.|+++.|+.|+.++ .+++++.|+++
T Consensus 393 ~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~--~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~v 470 (584)
T 3l6x_A 393 GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL--EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALV 470 (584)
T ss_dssp HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHH
Confidence 447899999999865 46778899999999998543 3566678999999999999987 89999999999
Q ss_pred HHHHHhh
Q 048793 649 LRILRRW 655 (683)
Q Consensus 649 L~~l~~~ 655 (683)
|.+|-.+
T Consensus 471 L~nl~~~ 477 (584)
T 3l6x_A 471 LQTIWGY 477 (584)
T ss_dssp HHHHHTS
T ss_pred HHHHHcC
Confidence 9999653
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=2e-24 Score=251.71 Aligned_cols=283 Identities=13% Similarity=0.094 Sum_probs=239.4
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..|+++.|+.+|+++ ++..|..|+++|.+++.+ +++|..+++.|++|+|+.+|.++ +...+++|+++|.||+.+
T Consensus 493 eaGaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~----~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 493 NEGITTALCALAKTE-SHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEG----TEKGKRHATQALARIGIT 566 (810)
T ss_dssp HTTHHHHHHHHHTCC-CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccC----CHHHHHHHHHHHHHHhcC
Confidence 468999999999999 999999999999999975 56999999999999999999998 899999999999999875
Q ss_pred chhHHHHh---cccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793 449 EANKTRIM---ETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524 (683)
Q Consensus 449 ~~~k~~I~---~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
.+....+. .. |++++|+.+|.++.+...+..|+++|.||+.. ++++..++. .|+++.|+.+|.++++.+++.|+
T Consensus 567 ~~p~~~~~~~~~~-~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 567 INPEVSFSGQRSL-DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp SCHHHHTTTHHHH-HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHH
T ss_pred CChhhhhcchhhh-cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHH
Confidence 44333221 13 68999999998664455667899999999987 568888888 89999999999999999999999
Q ss_pred HHHHHhcCCcchhHHHHh-cCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHH-cCchHHHHHHHhcCChHH
Q 048793 525 VAILNLAGDRETVGRLVE-RGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAA-YNTIKKLCILLREGSDTS 597 (683)
Q Consensus 525 ~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~-~g~v~~Lv~lL~~~s~~~ 597 (683)
++|.||+.+++++..+++ +|+++.|+.++.+. .+....|.++|++++. ++.. +.. .|+++.|+.++.+++...
T Consensus 645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~v 724 (810)
T 3now_A 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724 (810)
T ss_dssp HHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHH
T ss_pred HHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHH
Confidence 999999999999988886 79999999999864 3457777888888765 3432 333 588999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC---CHHHHHHHHHHHHHHHhhhccccc
Q 048793 598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG---TARARRKAAALLRILRRWAAGLDA 661 (683)
Q Consensus 598 ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~---~~~~k~kA~~lL~~l~~~~~~~~~ 661 (683)
++.|+++|.+++.+++ .....+.+.|++++|..|++.. +.++.+.|...|+.+-++..-...
T Consensus 725 q~~A~~aL~NL~~~s~--e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~ 789 (810)
T 3now_A 725 QHRGIVIILNMINAGE--EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERS 789 (810)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCC
Confidence 9999999999998543 3456688899999999998654 789999999999999998765443
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.92 E-value=1.5e-23 Score=237.54 Aligned_cols=285 Identities=16% Similarity=0.118 Sum_probs=240.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~ 447 (683)
..|+|+.|+.+|.++ +.+++..|+++|.+++.+++++|..+.+.|+++.|+.+|..... .....++.+++++|.|++.
T Consensus 160 ~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 578999999999999 99999999999999999999999999999999999999987610 0123567899999999998
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
+......+....|+++.|+.+|.++ +.+++..|+++|.+|+.....+..++...|+++.|+.+|.+++..++..|+.+|
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 7655444443338999999999998 799999999999999988776555544489999999999999999999999999
Q ss_pred HHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHHHHHH
Q 048793 528 LNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTSRESA 601 (683)
Q Consensus 528 ~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A 601 (683)
.||+.+. +++..++++|+++.|+.+|.+. .+....|+++|.+++. +.+. +...|.++.|+.++.+++..++..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 9998754 5778889999999999999864 4457788888888764 3433 3445889999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
+++|.+++.++..+ ....+.+.|++++|+.|+.+.++++...+...|.++-++.
T Consensus 398 ~~aL~nl~~~~~~~-~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 398 AWAITNYTSGGTVE-QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHSCHH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999876543 3445778999999999999999999999999998886543
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=4e-23 Score=233.48 Aligned_cols=278 Identities=15% Similarity=0.153 Sum_probs=241.5
Q ss_pred hhhhHHHHHHHhccCCC-HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQS-MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~-~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
..|.++.|+.+|.++ + +..+..|+++|.+++.++++++..+++.|+||.|+.+|.++ +..+++.|+++|.||+.
T Consensus 115 ~~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~v~~~a~~aL~~l~~ 189 (528)
T 4b8j_A 115 QSGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS----SDDVREQAVWALGNVAG 189 (528)
T ss_dssp HTTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhC
Confidence 468999999999987 5 99999999999999999888999999999999999999998 99999999999999997
Q ss_pred C-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 448 L-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 448 ~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
+ +.++..+... |+++.|+.+|....+..++..|+++|.+|+........... .|+++.|+.+|.++++.++..|+++
T Consensus 190 ~~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~a 267 (528)
T 4b8j_A 190 DSPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWA 267 (528)
T ss_dssp TCHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 6 4567788887 99999999995444799999999999999988655555555 7999999999999999999999999
Q ss_pred HHHhcCCcchh-HHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcC-ChHHHH
Q 048793 527 ILNLAGDRETV-GRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREG-SDTSRE 599 (683)
Q Consensus 527 L~nLs~~~~n~-~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~-s~~~ke 599 (683)
|.+|+...+++ ..+++.|+++.|+.+|.+. ......|+.+|.+++. .... ....|+++.|+.+|.+. ++.++.
T Consensus 268 L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 347 (528)
T 4b8j_A 268 LSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKK 347 (528)
T ss_dssp HHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHH
Confidence 99999877654 5678899999999999864 4568889999988875 3333 33458899999999988 999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
.|+++|.+|+.++. .....+...|+++.|+.++.++++.+++.|.++|.++...
T Consensus 348 ~A~~~L~nl~~~~~--~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 348 EACWTISNITAGNK--DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHTSCH--HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH--HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999998532 2344566789999999999999999999999999999875
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.92 E-value=2e-23 Score=235.50 Aligned_cols=284 Identities=16% Similarity=0.113 Sum_probs=239.3
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~ 447 (683)
..|+|+.|+.+|.++ +.+++..|+++|.+++.+++.+|..+.+.|+++.|+.+|.+... .....++.+++++|.|++.
T Consensus 141 ~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 141 DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 578999999999999 99999999999999999999999999999999999999987610 0123467899999999998
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
+......+....|+++.|+.+|.++ +.+++..|+++|.+|+....++..+....|+++.|+.+|.+++..++..|+++|
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 7655444443338999999999988 799999999999999988776655554489999999999999999999999999
Q ss_pred HHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHHHHHH
Q 048793 528 LNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTSRESA 601 (683)
Q Consensus 528 ~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A 601 (683)
.||+... .++..+++.|+++.|+.+|.+. .+....|+++|.+++. +.+. +...|.++.|+.++.+++..++..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9998765 5678889999999999999864 4457888888988764 3333 3445889999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
+++|.+++.++..+ ....+.+.|+++.|+.|+.+.++++...+.+.|.++-++
T Consensus 379 a~aL~Nl~~~~~~~-~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 379 AWAITNYTSGGTVE-QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHCCHH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHH-HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999876544 344577899999999999999999999999998887654
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=3.9e-23 Score=209.04 Aligned_cols=236 Identities=18% Similarity=0.257 Sum_probs=211.4
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-c
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-E 449 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~ 449 (683)
+.++.|+..|.++ +++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.++ +..++..|+++|.+++.+ +
T Consensus 2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASGPD 76 (252)
T ss_dssp CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCH
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcCCh
Confidence 4578999999999 899999999999999999888999999999999999999998 999999999999999987 7
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLS-GVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls-~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
+++..+.+. |+++.|+.+|+++ +.+++..|+++|.+|+ ..++++..+.. .|+++.|+++|.++++.++..|+++|.
T Consensus 77 ~~~~~~~~~-~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 77 EAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHHT-THHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888888887 9999999999988 7999999999999999 56678888887 899999999999999999999999999
Q ss_pred HhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHHHHHHH
Q 048793 529 NLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTSRESAA 602 (683)
Q Consensus 529 nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A~ 602 (683)
||+.+.+ ++..+++.|+++.|+++|.+. ++....++.+|.+++. +++. ....|+++.|+.++.++++.+++.|+
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 233 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence 9998654 568889999999999999864 4568888999988875 4443 34458899999999999999999999
Q ss_pred HHHHHHHhcCCc
Q 048793 603 ATLVTICRKGGS 614 (683)
Q Consensus 603 ~aL~~L~~~~~~ 614 (683)
++|.+|+.+.+.
T Consensus 234 ~~L~~l~~~~~~ 245 (252)
T 4hxt_A 234 RALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHTCBC
T ss_pred HHHHHHHcCCCc
Confidence 999999986553
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.91 E-value=2.5e-22 Score=226.85 Aligned_cols=275 Identities=14% Similarity=0.107 Sum_probs=237.7
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCCCCCC-hhhHHHHHHHHHhccc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDTASRL-PNLQVNAVTTILNLSI 447 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~~~~d-~~~qe~A~~aL~nLs~ 447 (683)
...++.|+..|.++ +++.+..|++.|+.++.... .++..+++.|++|.|+.+|.+. + +.++..|+++|.+++.
T Consensus 73 ~~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 73 LESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE----DFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp --CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT----TCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC----CCHHHHHHHHHHHHHHhC
Confidence 34688999999998 99999999999999976554 5788899999999999999987 6 8999999999999998
Q ss_pred C-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhh-cCCChhHHHHHH
Q 048793 448 L-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDAL 524 (683)
Q Consensus 448 ~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~ 524 (683)
+ ++++..++.. |+++.|+.+|.++ +..++..|+++|.+|+... .++..+.. .|++++|+.+| .+.+..++..|+
T Consensus 148 ~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~ 224 (528)
T 4b8j_A 148 GTSENTKVVIDH-GAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNAT 224 (528)
T ss_dssp SCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred CCHHHHHHHHhC-CcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHH
Confidence 6 6778888887 9999999999987 7999999999999999764 46777777 79999999999 556788999999
Q ss_pred HHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHH----HHHHcCchHHHHHHHhcCChHHHH
Q 048793 525 VAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTA----IVAAYNTIKKLCILLREGSDTSRE 599 (683)
Q Consensus 525 ~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e----~~~~~g~v~~Lv~lL~~~s~~~ke 599 (683)
++|.+|+.+..+.......|+++.|+.+|.+. .+....++.+|.+++.... .....|+++.|+.+|...++.+++
T Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~ 304 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 304 (528)
T ss_dssp HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHH
Confidence 99999999876666667799999999999854 4568888999988875432 334458999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 048793 600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAALLRILRR 654 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL~~l~~ 654 (683)
.|+++|.+|+.+.. ...+.+...|+++.|+.++.++ ++.+++.|.++|.++..
T Consensus 305 ~a~~~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 305 PALRTVGNIVTGDD--AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHHHHTTSCH--HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 99999999998543 3445567899999999999999 99999999999999986
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=3e-23 Score=210.88 Aligned_cols=231 Identities=15% Similarity=0.199 Sum_probs=204.4
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-Cch
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEA 450 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~ 450 (683)
..+.++..|.++ +++.+..|++.|+++...+++++..+.+.|+||.|+.+|.++ ++.++..|+++|.|++. +++
T Consensus 13 ~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 13 ELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp SHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHH
Confidence 456788999999 999999999999876665677899999999999999999998 89999999999999997 578
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
++..+++. |+++.|+.+|+++ +.+++..|+++|.+|+..++++ ..+.. .|+++.|+.+|.++++.++..|+++|.|
T Consensus 88 ~~~~i~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 88 QIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp HHHHHHHT-THHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888887 9999999999998 7999999999999999999988 66766 8999999999999999999999999999
Q ss_pred hcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC-CcHHH---HHHcCchHHHHHHHhcCChHHHHHHHH
Q 048793 530 LAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG-GLTAI---VAAYNTIKKLCILLREGSDTSRESAAA 603 (683)
Q Consensus 530 Ls~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~-~~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A~~ 603 (683)
|+.+. +++..+++.|+++.|+++|.+. ......|+.+|.+++ ++++. ....|+++.|+.++.++++.+++.|++
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHH
Confidence 99855 5777888999999999999864 455888999998887 34443 344588999999999999999999999
Q ss_pred HHHHHHh
Q 048793 604 TLVTICR 610 (683)
Q Consensus 604 aL~~L~~ 610 (683)
+|.+|+.
T Consensus 245 ~L~~l~~ 251 (252)
T 4db8_A 245 ALEKLQS 251 (252)
T ss_dssp HHHTTC-
T ss_pred HHHHHhc
Confidence 9999875
No 19
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=210.44 Aligned_cols=195 Identities=13% Similarity=0.118 Sum_probs=168.9
Q ss_pred hhhHHHHHHHhccCCCH--HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 370 KMTASFLINKLATSQSM--EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~--~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
...++.||++|.++ ++ +.+..|++.|++++..++.+|..|.+.|+||.||.+|+++ +..+|+.|+++|.||+.
T Consensus 7 ~~~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~----~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 7 EMTLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ----NEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CCCHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHh
Confidence 45789999999998 77 8899999999999999989999999999999999999998 99999999999999997
Q ss_pred -CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc---C---------
Q 048793 448 -LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK---G--------- 514 (683)
Q Consensus 448 -~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~---~--------- 514 (683)
+++||..|++. |+|++|+++|+++.+.+++++|+++|++||..+++|..|+. ++|++|+.++. +
T Consensus 82 ~~~~nk~~I~~~-GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~ 158 (233)
T 3tt9_A 82 EDNDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPK 158 (233)
T ss_dssp TCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCC
T ss_pred CCHHHHHHHHHc-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccc
Confidence 57899999998 99999999998532799999999999999999999999986 57999999763 1
Q ss_pred ----CChhHHHHHHHHHHHhcCC-cchhHHHHhc-CchHHHHHHhccC-------chhHHHHHHHHHHcCC
Q 048793 515 ----GPTSSKRDALVAILNLAGD-RETVGRLVER-GIVEIVAEAMDVL-------PEESVTILEAVVKRGG 572 (683)
Q Consensus 515 ----~~~~~~~~A~~aL~nLs~~-~~n~~~iv~a-G~V~~Lv~lL~~~-------~~~~~~aL~~L~~l~~ 572 (683)
.+..++.+|..+|+||+.. +++|..|.++ |+|+.|+.++... ...++.|+++|.+++-
T Consensus 159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 1457889999999999885 5899999986 7789999999731 2236677777766653
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.90 E-value=5.5e-22 Score=200.57 Aligned_cols=238 Identities=17% Similarity=0.194 Sum_probs=210.0
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV- 491 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~- 491 (683)
|.||.|+.+|.++ ++.++..|+.+|.+++.+. +++..+++. |+++.|+.+|+++ +.+++..|+++|.+|+..
T Consensus 2 ~~i~~L~~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 2 NDVEKLVKLLTST----DSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAARALANIASGP 75 (252)
T ss_dssp CHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 7899999999999 9999999999999998765 588888887 9999999999988 699999999999999988
Q ss_pred cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc-CCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHH
Q 048793 492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVK 569 (683)
Q Consensus 492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~ 569 (683)
++++..+.. .|+++.|+.+|.++++.++..|+++|.||+ .+++++..+++.|+++.|+++|.+. ++....++.+|.+
T Consensus 76 ~~~~~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 76 DEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 778888887 899999999999999999999999999999 5677899999999999999999864 4568889999999
Q ss_pred cCCc-HH---HHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHH
Q 048793 570 RGGL-TA---IVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKA 645 (683)
Q Consensus 570 l~~~-~e---~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA 645 (683)
++.. ++ .....|+++.|+.++.+.++..++.|+++|.++|.++ ......+.+.|+++.|+.++.++++++++.|
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 232 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEA 232 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence 8853 33 3344588999999999999999999999999999843 3345567789999999999999999999999
Q ss_pred HHHHHHHHhhhcccc
Q 048793 646 AALLRILRRWAAGLD 660 (683)
Q Consensus 646 ~~lL~~l~~~~~~~~ 660 (683)
.++|.++........
T Consensus 233 ~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 233 QRALENIKSGGWLEH 247 (252)
T ss_dssp HHHHHHHHHTCBCCC
T ss_pred HHHHHHHHcCCCccc
Confidence 999999998665443
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=7.8e-22 Score=223.13 Aligned_cols=278 Identities=15% Similarity=0.113 Sum_probs=240.0
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..+.++.|+.+|.++.++..+..|+++|.+++.++++++..+++.|++|.|+.+|.++ ++.+++.|+++|.||+.+
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~ 203 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGD 203 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC
Confidence 4688999999998753789999999999999998888999999999999999999998 999999999999999977
Q ss_pred -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
++++..+... |+++.|+.+|.+. +.+++..|+++|.+|+... ........ .|+++.|+.+|.++++.++..|+++
T Consensus 204 ~~~~~~~~~~~-~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~ 280 (530)
T 1wa5_B 204 STDYRDYVLQC-NAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSMDTETLVDACWA 280 (530)
T ss_dssp CHHHHHHHHHT-TCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CccchHHHHHc-CcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4677777787 9999999999986 7999999999999999876 44445554 7999999999999999999999999
Q ss_pred HHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HHH---HHHcCchHHHHHHHhcCChHHHHH
Q 048793 527 ILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TAI---VAAYNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 527 L~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e~---~~~~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
|.+|+... +++..+++.|+++.|+.+|.+. ......|+.+|.+++.. .+. ....|.++.|+.+|...++.+++.
T Consensus 281 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~ 360 (530)
T 1wa5_B 281 ISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE 360 (530)
T ss_dssp HHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHH
Confidence 99999865 4677788899999999999854 44578888999888743 332 233588999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
|+++|.+|+.++. .. .+.+...|+++.|+.++.++++++++.|.++|.++...
T Consensus 361 A~~aL~~l~~~~~-~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 361 ACWTISNITAGNT-EQ-IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHTTSCH-HH-HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HH-HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999998543 23 33455789999999999999999999999999999775
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=3e-21 Score=212.40 Aligned_cols=276 Identities=14% Similarity=0.128 Sum_probs=235.8
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc-
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE- 449 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~- 449 (683)
+.++.|++.|.++.++..+..|++.|.+++..+++++..+.+.|++|.|+.+|.++ ++.+++.|+++|.+++.+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~vr~~a~~~L~~l~~~~~ 139 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE----FEDVQEQAVWALGNIAGDST 139 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHccCCH
Confidence 78999999998764689999999999999998888888889999999999999998 9999999999999999874
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc--chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH--AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~--~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
+++..+... |+++.|+.+|++..+.+++..|+++|.+|+... ..+..+. .|+++.|+.++.++++.++..|+++|
T Consensus 140 ~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L 216 (450)
T 2jdq_A 140 MCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADACWAL 216 (450)
T ss_dssp HHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 567777777 999999999996447999999999999999764 2333333 68999999999999999999999999
Q ss_pred HHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcH-HH---HHHcCchHHHHHHHhcCChHHHHHH
Q 048793 528 LNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLT-AI---VAAYNTIKKLCILLREGSDTSRESA 601 (683)
Q Consensus 528 ~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~-e~---~~~~g~v~~Lv~lL~~~s~~~ke~A 601 (683)
.+|+.+. +++..+++.|+++.|+++|.+. .+....|+.+|.+++... +. ....|.++.|+.++.+.++..++.|
T Consensus 217 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a 296 (450)
T 2jdq_A 217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296 (450)
T ss_dssp HHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHH
Confidence 9999865 5777888999999999999854 455788888888887543 22 2334889999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
+++|.+++.++.. ..+.+.+.|+++.|+.++.++++++|+.|.++|.++...
T Consensus 297 ~~~L~~l~~~~~~--~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 297 CWTISNITAGNRA--QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHTTSCHH--HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999985432 333455679999999999999999999999999999764
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.89 E-value=5.9e-21 Score=215.94 Aligned_cols=279 Identities=17% Similarity=0.162 Sum_probs=239.4
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..++++.|+.+|.++ +++++..|+++|.+++.+++.++..+.+.|++|.|+.+|.+. +..++..|+++|.+|+.+
T Consensus 171 ~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 171 DADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN----KPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC----CHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC----CHHHHHHHHHHHHHHhCC
Confidence 468899999999998 999999999999999998888999999999999999999987 999999999999999976
Q ss_pred c-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 449 E-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
. ......... |+++.|+.+|.++ +.+++..|+++|.+|+.... ....+.. .|+++.|+.+|.++++.++..|+++
T Consensus 246 ~~~~~~~~~~~-~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 246 KKPQPDWSVVS-QALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp SSSCCCHHHHG-GGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCcHHHHH-hHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHH
Confidence 5 444445555 8999999999988 79999999999999997654 4555655 7999999999999889999999999
Q ss_pred HHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHHH---HHcCchHHHHHHHhcCChHHHHH
Q 048793 527 ILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAIV---AAYNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 527 L~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~~---~~~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
|.||+.+. .....+++.|+++.|+.+|.+. ......|+.+|.+++. +.+.+ ...|.++.|+.+|..+++.++..
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 402 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 99999865 4566778899999999999865 4557888889988874 44433 34588999999999999999999
Q ss_pred HHHHHHHHHhcCCc--hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 601 AAATLVTICRKGGS--EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 601 A~~aL~~L~~~~~~--~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
|+++|.+++..+.. .... .+.+.|+++.|+.++.+++++++..|.++|..+-...
T Consensus 403 a~~aL~~l~~~~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIR-YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHH-HHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHH-HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999986543 3333 4557899999999999999999999999999887644
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=5.6e-21 Score=210.22 Aligned_cols=279 Identities=14% Similarity=0.114 Sum_probs=237.1
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCC-CCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGP-DTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s-~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
..+.++.|+.+|.++ +++.+..|++.|.+++.+++.++..+.+.|++|.|+.+|.+ . +..++..|+++|.+++.
T Consensus 105 ~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~----~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 105 QAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN----RLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC----CHHHHHHHHHHHHHHHC
T ss_pred hCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC----CHHHHHHHHHHHHHHhC
Confidence 467899999999998 99999999999999999988899999999999999999995 5 88999999999999997
Q ss_pred Cc--hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793 448 LE--ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524 (683)
Q Consensus 448 ~~--~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
+. ..+..++ . |+++.|+.+|.++ +.+++..++++|.+|+... ++...+.. .|+++.|+.+|.++++.++..|+
T Consensus 180 ~~~~~~~~~~~-~-~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~ 255 (450)
T 2jdq_A 180 GKSPPPEFAKV-S-PCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPAL 255 (450)
T ss_dssp CSSSCCCGGGT-G-GGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCCCCCHHHH-H-HHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHH
Confidence 54 3333333 4 8999999999988 7999999999999999865 45556666 79999999999988899999999
Q ss_pred HHHHHhcCCcch-hHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHHH---HHcCchHHHHHHHhcCChHHH
Q 048793 525 VAILNLAGDRET-VGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAIV---AAYNTIKKLCILLREGSDTSR 598 (683)
Q Consensus 525 ~aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~~---~~~g~v~~Lv~lL~~~s~~~k 598 (683)
++|.+|+.+.++ ...+++.|+++.|+.+|.+. ......|+.+|.+++. +.+.. ...|.++.|+.+|..+++.++
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 256 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 999999987654 55678899999999999864 4458889999988874 44433 334889999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793 599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA 657 (683)
Q Consensus 599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~ 657 (683)
..|+++|.+++.++....... +...|+++.|+.++.++++++++.|.+.|.++....+
T Consensus 336 ~~a~~~L~~l~~~~~~~~~~~-l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 336 KEAAWAITNATSGGSAEQIKY-LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHHCCHHHHHH-HHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHH-HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 999999999998643333333 4467999999999999999999999999999877543
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=8e-21 Score=213.63 Aligned_cols=282 Identities=12% Similarity=0.082 Sum_probs=240.4
Q ss_pred hhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHH
Q 048793 364 AALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTIL 443 (683)
Q Consensus 364 ~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~ 443 (683)
..+. ..|.++.|+++|.++ +++.+..|++.|.+++.+++.++..+.+.|++|.|+.+|.++ +..++..++.+|.
T Consensus 95 ~~i~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 95 LAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQ 168 (529)
T ss_dssp HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC----CHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 3343 458999999999998 999999999999999999877899999999999999999998 8999999999999
Q ss_pred hcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793 444 NLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRD 522 (683)
Q Consensus 444 nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~ 522 (683)
+++.+ ++++..+... |+++.|+.+|+++.....+..++.+|.+|+..++++..+.. .|+++.|+.++.++++..+..
T Consensus 169 ~la~~~~~~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~ 246 (529)
T 1jdh_A 169 ILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQN 246 (529)
T ss_dssp HHHTTCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHH
T ss_pred HHHhCCHHHHHHHHHC-CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHH
Confidence 99975 6888888887 99999999999886677778899999999999999999988 899999999999998899999
Q ss_pred HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HH---HHHHcCchHHHHHHHhcC--Ch
Q 048793 523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TA---IVAAYNTIKKLCILLREG--SD 595 (683)
Q Consensus 523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e---~~~~~g~v~~Lv~lL~~~--s~ 595 (683)
|+++|.||+.+..... ...|+++.|+++|.+. ++....++.+|.+++.. .+ .+...|+++.|+.+|... ++
T Consensus 247 a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~ 324 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324 (529)
T ss_dssp HHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHH
Confidence 9999999998764322 2358999999999754 45688888899888753 33 334458899999999763 37
Q ss_pred HHHHHHHHHHHHHHhcCCc-hHHHHHHhcCCcHHHHHHHhhcCC-HHHHHHHHHHHHHHHhh
Q 048793 596 TSRESAAATLVTICRKGGS-EMVADIAAVPGIERVIWELMESGT-ARARRKAAALLRILRRW 655 (683)
Q Consensus 596 ~~ke~A~~aL~~L~~~~~~-~~~~~~~~~~G~~~~L~~Ll~~~~-~~~k~kA~~lL~~l~~~ 655 (683)
..++.|+++|.+|+.++++ ...+..+...|+++.|+.++.++. +.+++.|.++|.++...
T Consensus 325 ~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 8999999999999986544 234555778899999999999886 69999999999998763
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=1.6e-21 Score=219.26 Aligned_cols=277 Identities=14% Similarity=0.103 Sum_probs=234.3
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..+.++.|++.|.++.+++.+..|+..|++++.+. +++..+.+.|+||.|+.+|.++ ++.++..|+++|.||+.+
T Consensus 57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~ 131 (529)
T 1jdh_A 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSP----VDSVLFYAITTLHNLLLH 131 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-hhHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC
Confidence 45789999999976437999999999999998865 5999999999999999999998 999999999999999987
Q ss_pred -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChh-HHHHHHH
Q 048793 449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTS-SKRDALV 525 (683)
Q Consensus 449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~ 525 (683)
++.+..+.+. |+++.|+++|+++ +.+.+..++.+|.+++.. ++++..++. .|+++.|+.+|++++.. ....++.
T Consensus 132 ~~~~~~~i~~~-g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~ 208 (529)
T 1jdh_A 132 QEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSR 208 (529)
T ss_dssp CTTHHHHHHHH-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CcchHHHHHHc-CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHHH
Confidence 4567777777 9999999999988 799999999999999975 678888888 79999999999887654 5678899
Q ss_pred HHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHH-HHcCchHHHHHHHhcCChHHHHHHHH
Q 048793 526 AILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIV-AAYNTIKKLCILLREGSDTSRESAAA 603 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~-~~~g~v~~Lv~lL~~~s~~~ke~A~~ 603 (683)
+|.||+.+++++..+++.|+++.|++++.+. .+....++.+|.+++...... ...+.++.|++++...++..++.|++
T Consensus 209 ~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 288 (529)
T 1jdh_A 209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288 (529)
T ss_dssp HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999999864 445777788887766432111 11256899999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHhh
Q 048793 604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESG--TARARRKAAALLRILRRW 655 (683)
Q Consensus 604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~kA~~lL~~l~~~ 655 (683)
+|.+|+.++. .....+.+.|+++.|+.++.+. ++.+++.|..+|.++...
T Consensus 289 ~L~~L~~~~~--~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 289 ILSNLTCNNY--KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHTTTCH--HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcCCH--HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 9999998643 2455577889999999998763 479999999999999653
No 27
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.87 E-value=3.6e-23 Score=197.56 Aligned_cols=168 Identities=21% Similarity=0.303 Sum_probs=107.0
Q ss_pred cchhhHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHhhhhhcCCCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHH
Q 048793 144 RLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLR-NSSACKEEIESLEE 222 (683)
Q Consensus 144 ~~s~ev~e~v~~~~~q~~~~~~~~~~d~~~~~l~~~v~~~l~~~~~~~~~d~~~l~~~~~~l~~~-~~~~~~~E~~~l~~ 222 (683)
...++|..+|..++++.|..+++.|+ .++.++..++..++....+. -...+.-. .... +++
T Consensus 10 ~~~~~I~~~l~~aKk~~w~~~e~~r~-~~~~~l~~~~~~l~~~~~~~----------~l~~~~~~~~~~~-------~~~ 71 (179)
T 2f42_A 10 NFGDDIPSALRIAKKKRWNSIEEKRI-SQENELHAYLSKLILAEKER----------ELDDRVKQSDDSQ-------NGG 71 (179)
T ss_dssp ------------CCCTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----------HTTC-------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----------HHHHHHhhccchh-------hhH
Confidence 46789999999999999999888887 67888999998888653222 11111100 0011 111
Q ss_pred HHhhhcccccHHHHHHHHHHHHhhhhhccccccCCcchHHHhhcccCCCCCCCcccccccccCCCCceecCCccccchhh
Q 048793 223 EIQNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQS 302 (683)
Q Consensus 223 e~~~~~~~~~~~~~~~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~ 302 (683)
+..+.. ...-..+.++..+....+. .. ....+|++|+||||+++|+|||+++|||||||.|
T Consensus 72 ~~~~~~-~~~~~~i~~~~~l~~~~~~--------------~~----~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~ 132 (179)
T 2f42_A 72 DISKMK-SKHDKYLMDMDELFSQVDE--------------KR----KKREIPDYLCGKISFELMREPCITPSGITYDRKD 132 (179)
T ss_dssp -------CHHHHHHHHHHHHHHHHHH--------------GG----GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhh--------------hc----cccCCcHhhcccCccccCCCCeECCCCCEECHHH
Confidence 111111 1112234455444432221 11 1357899999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 048793 303 ISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFD 348 (683)
Q Consensus 303 I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~~ 348 (683)
|++|+..++.+||.|++++...+++||..|+++|+.|+..|||...
T Consensus 133 I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~d 178 (179)
T 2f42_A 133 IEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVED 178 (179)
T ss_dssp HHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC-
T ss_pred HHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcCC
Confidence 9999987555899999999999999999999999999999998653
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=3e-21 Score=223.80 Aligned_cols=276 Identities=14% Similarity=0.106 Sum_probs=234.9
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..+.++.|++.|.++.+++.+..|+..|++++.+. +++..+.+.|+||.|+.+|.++ ++.++..|+.+|.||+.+
T Consensus 54 ~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~----~~~v~~~A~~aL~nL~~~ 128 (644)
T 2z6h_A 54 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSP----VDSVLFYAITTLHNLLLH 128 (644)
T ss_dssp CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhC
Confidence 34789999999986547999999999999999875 4999999999999999999998 999999999999999976
Q ss_pred c-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHH
Q 048793 449 E-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALV 525 (683)
Q Consensus 449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~ 525 (683)
. ..+..+.+. |+++.|+.+|+++ +.+.+..++.+|.+|+. .++++..++. .|+++.|+.+|++++ ...+..++.
T Consensus 129 ~~~~~~~v~~~-g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~ 205 (644)
T 2z6h_A 129 QEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSR 205 (644)
T ss_dssp STTHHHHHHHT-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred cchhHHHHHHC-CChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHH
Confidence 4 556677777 9999999999988 68888888999999996 6789999988 799999999998875 457789999
Q ss_pred HHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHH-HHcCchHHHHHHHhcCChHHHHHHHH
Q 048793 526 AILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIV-AAYNTIKKLCILLREGSDTSRESAAA 603 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~-~~~g~v~~Lv~lL~~~s~~~ke~A~~ 603 (683)
+|+||+.+++++..++++|+++.|+.++.+. ......++.+|.+++...... ...+.++.|+++|...++.+++.|++
T Consensus 206 ~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~ 285 (644)
T 2z6h_A 206 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 285 (644)
T ss_dssp HHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999999864 445777888888876432110 11156899999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-C-HHHHHHHHHHHHHHHh
Q 048793 604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESG-T-ARARRKAAALLRILRR 654 (683)
Q Consensus 604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~-~~~k~kA~~lL~~l~~ 654 (683)
+|.+|+.++. ..+..+.+.|+++.|+.++.+. + +.+++.|.++|.++..
T Consensus 286 aL~~L~~~~~--~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 286 ILSNLTCNNY--KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCH--HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 9999998543 3355567789999999998873 3 7999999999999964
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.87 E-value=2.3e-21 Score=196.94 Aligned_cols=232 Identities=15% Similarity=0.162 Sum_probs=203.4
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc-ccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNL-SILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-V 491 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL-s~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~ 491 (683)
...+.++.+|.++ |++++..|+.+|.++ +.+++++..+++. |+++.|+.+|+++ +.+.+..|+++|.+|+. .
T Consensus 12 ~~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 12 SELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGG 85 (252)
T ss_dssp CSHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC
Confidence 5689999999999 999999999999775 4566778888887 9999999999988 69999999999999998 5
Q ss_pred cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchh-HHHHhcCchHHHHHHhccC-chhHHHHHHHHHH
Q 048793 492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETV-GRLVERGIVEIVAEAMDVL-PEESVTILEAVVK 569 (683)
Q Consensus 492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~ 569 (683)
++++..+.. .|+++.|+.+|.++++.+++.|+++|.||+.+++++ ..+++.|+++.|+++|.+. ......++.+|.+
T Consensus 86 ~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 86 NEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 778888888 899999999999999999999999999999999988 8889999999999999864 4568889999999
Q ss_pred cCCc-HHH---HHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHH
Q 048793 570 RGGL-TAI---VAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKA 645 (683)
Q Consensus 570 l~~~-~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA 645 (683)
++.. ++. ....|+++.|+.++...++..++.|+++|.+|+.+++ .....+.+.|+++.|+.++.++++++++.|
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 8853 333 3446899999999999999999999999999997543 345557788999999999999999999999
Q ss_pred HHHHHHHHh
Q 048793 646 AALLRILRR 654 (683)
Q Consensus 646 ~~lL~~l~~ 654 (683)
.++|.++.+
T Consensus 243 ~~~L~~l~~ 251 (252)
T 4db8_A 243 QEALEKLQS 251 (252)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999998754
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=5e-21 Score=221.92 Aligned_cols=274 Identities=15% Similarity=0.108 Sum_probs=236.0
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
..|.++.|+.+|.++ ++.++..|+..|.+++.+.. ++..+... |+++.|+.+|.++ .++.++..|+.+|.+|+.
T Consensus 12 ~~g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 12 ATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSH 86 (644)
T ss_dssp CTTTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTT
T ss_pred hhchHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhc
Confidence 567899999999988 99999999999999999875 77777754 9999999999753 178999999999999999
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
+++++..+.+. |+++.|+.+|+++ +..++..|+++|.+|+... ..+..+.. .|+++.|+.+|.+++.+.+..++.+
T Consensus 87 ~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 87 HREGLLAIFKS-GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp SHHHHHHHHTT-THHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred ChhhHHHHHHc-CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCHHHHHHHHHH
Confidence 98999999998 9999999999988 7999999999999999875 45666666 8999999999999888888888999
Q ss_pred HHHhcC-CcchhHHHHhcCchHHHHHHhccCc--hhHHHHHHHHHHcCCcHH---HHHHcCchHHHHHHHhcCChHHHHH
Q 048793 527 ILNLAG-DRETVGRLVERGIVEIVAEAMDVLP--EESVTILEAVVKRGGLTA---IVAAYNTIKKLCILLREGSDTSRES 600 (683)
Q Consensus 527 L~nLs~-~~~n~~~iv~aG~V~~Lv~lL~~~~--~~~~~aL~~L~~l~~~~e---~~~~~g~v~~Lv~lL~~~s~~~ke~ 600 (683)
|.+|+. +++++..+++.|+++.|+++|.+.. .....++.+|.+++.+++ .+...|+++.|+.++..++...+++
T Consensus 164 L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 243 (644)
T 2z6h_A 164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 999996 6789999999999999999998542 335667777777775544 3445588999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
|+++|.+||...... ....|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 244 a~~~L~nL~~~~~~~-----~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHHGGGCTTC-----CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcchhh-----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999865432 11237899999999999999999999999999774
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=1.8e-20 Score=185.07 Aligned_cols=196 Identities=15% Similarity=0.191 Sum_probs=173.7
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI- 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~- 447 (683)
..+..+.|+.+|.++ +++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.++ ++.+++.|+++|.|++.
T Consensus 10 ~~~~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 10 HGSELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASG 84 (210)
T ss_dssp ---CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTS
T ss_pred ccchhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC
Confidence 345678899999998 999999999999999988888999999999999999999998 99999999999999995
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
+++++..+++. |+++.|+.+|+++ +..++..|+++|.+|+...+ .+..+.. .|+++.|+++|.++++.+++.|+++
T Consensus 85 ~~~~~~~i~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 85 GNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp CHHHHHHHHHT-TCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CcHHHHHHHHC-CCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 56778888887 9999999999998 79999999999999997554 5556666 8999999999999999999999999
Q ss_pred HHHhcCC-cchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC
Q 048793 527 ILNLAGD-RETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG 572 (683)
Q Consensus 527 L~nLs~~-~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~ 572 (683)
|.||+.+ ++++..+++.|+++.|++++.+. .+..+.|+.+|.+++.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999997 66888889999999999999854 4558888888887764
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=194.22 Aligned_cols=189 Identities=12% Similarity=0.101 Sum_probs=163.7
Q ss_pred cHHHHHHhhCCCCCCCCh--hhHHHHHHHHHhccc-CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-
Q 048793 415 AIALLARHLGPDTASRLP--NLQVNAVTTILNLSI-LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG- 490 (683)
Q Consensus 415 ~Ip~Lv~lL~s~~~~~d~--~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~- 490 (683)
.||.||.+|.++ ++ .+|..|+++|.+|+. +++++..|.+. |+||+||++|+++ +.++++.|+++|++|+.
T Consensus 9 ~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 9 TLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQ-NEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhC
Confidence 589999999998 77 899999999999995 57889999998 9999999999998 79999999999999998
Q ss_pred CcchhhHHhhhcccHHHHHHhhc-CCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc---c-----------
Q 048793 491 VHAHRKTLGRKTRVVKGLMDLVK-GGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD---V----------- 555 (683)
Q Consensus 491 ~~~~~~~i~~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~---~----------- 555 (683)
+++++..|++ .|+||+||++|+ +++...++.|+.+|+||+.+++|+..+++. +|++|++++. .
T Consensus 83 ~~~nk~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 83 DNDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp CHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CHHHHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 5789999998 899999999998 468889999999999999999999999874 6999998763 0
Q ss_pred ---CchhHHHHHHHHHHcCC-cHHHHHHc----CchHHHHHHHhcC------ChHHHHHHHHHHHHHHhc
Q 048793 556 ---LPEESVTILEAVVKRGG-LTAIVAAY----NTIKKLCILLREG------SDTSRESAAATLVTICRK 611 (683)
Q Consensus 556 ---~~~~~~~aL~~L~~l~~-~~e~~~~~----g~v~~Lv~lL~~~------s~~~ke~A~~aL~~L~~~ 611 (683)
+.+..+.|.+.|.+++. +++.+..+ |.++.|+.+++.+ +.+.+|+|+.+|++||..
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 12457889999999875 45655443 5689999999853 568899999999999974
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.6e-21 Score=216.88 Aligned_cols=291 Identities=14% Similarity=0.150 Sum_probs=234.5
Q ss_pred chhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-----------------------------------
Q 048793 361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD----------------------------------- 405 (683)
Q Consensus 361 ~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~----------------------------------- 405 (683)
..|..+....+.+..|+.+++...+......++..|.|++...+.
T Consensus 366 ~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v 445 (778)
T 3opb_A 366 SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDI 445 (778)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHH
Confidence 344556667788999999998522677888999999998874331
Q ss_pred ---hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCH--HHHHH
Q 048793 406 ---SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATW--EAKGN 480 (683)
Q Consensus 406 ---nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~--~~~~~ 480 (683)
++..+.++|+||.|+.+++++ ++.+++.|+++|.||+.+.++|..+++. |++++|+.+|.++... ..+.+
T Consensus 446 ~~~~~~~l~eaGvIp~Lv~Ll~S~----s~~~re~A~~aL~nLS~d~~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 446 LLFNEKYILRTELISFLKREMHNL----SPNCKQQVVRIIYNITRSKNFIPQLAQQ-GAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHHHHTTTTTHHHHHHHHGGGS----CHHHHHHHHHHHHHHHTSGGGHHHHHHT-THHHHHHHHTTCC---CCHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHH
Confidence 577888999999999999998 9999999999999999999999999998 9999999999988322 28999
Q ss_pred HHHHHHHhhcCcchhhHHhh--hcccHHHHHHhhcCC-Ch-------------hHHHHHHHHHHHhcCCcch-----hHH
Q 048793 481 AAATIFSLSGVHAHRKTLGR--KTRVVKGLMDLVKGG-PT-------------SSKRDALVAILNLAGDRET-----VGR 539 (683)
Q Consensus 481 Aa~~L~~Ls~~~~~~~~i~~--~~G~i~~Lv~lL~~~-~~-------------~~~~~A~~aL~nLs~~~~n-----~~~ 539 (683)
|+.+|.+|....+....+.. ..|+|++|+.||..+ .. -.+..|+.||.||+..++| +.+
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 99999999976665555532 139999999999832 11 1267999999999998743 788
Q ss_pred HHhc-CchHHHHHHhccCc-hhHHHHHHHHHHcCCcHHHHH-Hc---------CchHHHHHHHhcCChHHHHHHHHHHHH
Q 048793 540 LVER-GIVEIVAEAMDVLP-EESVTILEAVVKRGGLTAIVA-AY---------NTIKKLCILLREGSDTSRESAAATLVT 607 (683)
Q Consensus 540 iv~a-G~V~~Lv~lL~~~~-~~~~~aL~~L~~l~~~~e~~~-~~---------g~v~~Lv~lL~~~s~~~ke~A~~aL~~ 607 (683)
+++. |+++.|.++|.++. .....|+..+++++.+++++. .. +.++.|+.++..++..+|+.|+++|.+
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn 680 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9995 99999999998654 447778888888887777541 22 236789999999999999999999999
Q ss_pred HHhcCCchHHHHHHhcCCcHHHHHHHhhc--CCHHHHHHHHHHHHHHHhhhc
Q 048793 608 ICRKGGSEMVADIAAVPGIERVIWELMES--GTARARRKAAALLRILRRWAA 657 (683)
Q Consensus 608 L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~--~~~~~k~kA~~lL~~l~~~~~ 657 (683)
++...+ ...+.++...++++.|+.++++ +++.++..+..++.+|..+..
T Consensus 681 Lts~~~-~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 681 IATTIP-LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHCH-HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCCh-HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 976443 3445555555899999999999 899999999999999998553
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.84 E-value=3.9e-20 Score=218.81 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=232.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..+.++.|++.|.++.+++.+..|+..|++++... +++..+.+.|+||.|+.+|+++ ++.++..|+++|.||+.+
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~----~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSP----VDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC
Confidence 34789999999976548999999999999998864 5899999999999999999998 999999999999999987
Q ss_pred c-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhhcCCChh-HHHHHHH
Q 048793 449 E-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLVKGGPTS-SKRDALV 525 (683)
Q Consensus 449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~ 525 (683)
. +.+..+.+. |+++.|+.+|+++ +..++..++.+|.+|+. +++++..++. .|+++.|+.+|++++.. ....++.
T Consensus 265 ~~~~~~~v~~~-g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~ 341 (780)
T 2z6g_A 265 QEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSR 341 (780)
T ss_dssp STTHHHHHHHT-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ChhhHHHHHHc-CCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 4 556666676 9999999999987 78999999999999996 4678888888 79999999999987655 5578899
Q ss_pred HHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHH-HHcCchHHHHHHHhcCChHHHHHHHH
Q 048793 526 AILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIV-AAYNTIKKLCILLREGSDTSRESAAA 603 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~-~~~g~v~~Lv~lL~~~s~~~ke~A~~ 603 (683)
+|.+|+.+.+++..++++|+++.|+.+|.+. ......++.+|.+++...... ...+.++.|+.+|...++.+++.|++
T Consensus 342 aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~ 421 (780)
T 2z6g_A 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 421 (780)
T ss_dssp HHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999999864 345777788887765332110 11256889999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CC-HHHHHHHHHHHHHHHh
Q 048793 604 TLVTICRKGGSEMVADIAAVPGIERVIWELMES-GT-ARARRKAAALLRILRR 654 (683)
Q Consensus 604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~-~~~k~kA~~lL~~l~~ 654 (683)
+|.+|+.+.. ..+..+.+.|+++.|+.++.+ ++ +.+++.|.++|.++..
T Consensus 422 aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 422 ILSNLTCNNY--KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHHHTSSCH--HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCH--HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 9999998643 345567788999999998876 33 4999999999999865
No 35
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.84 E-value=2.4e-20 Score=193.65 Aligned_cols=235 Identities=19% Similarity=0.271 Sum_probs=149.2
Q ss_pred ChhHhhhHHHHHHHHHHHHHHHHHhcccchH--------HHHHhhHHHHHHHHHHHHHHHHHHhcCCCccccchhhHHHH
Q 048793 81 SPPTVLCFEEMYIVLQRMKTLIEDCYNGSKM--------WLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDV 152 (683)
Q Consensus 81 ~~~~~~~l~~L~~~l~~a~~ll~~c~~~skl--------yl~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~s~ev~e~ 152 (683)
...+...+-..+..+.+....+.++....++ |.+..+..-..+++++...+.+++..-|-....+...+...
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 4455666666677777777777776654443 66677777778999999999999998875544555666666
Q ss_pred HHHHHHHHhhhhhccCCCchhHHHHHHHHHHHhhhhhcCCCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhhcccc
Q 048793 153 VVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLR-NSSACKEEIESLEEEIQNQTDQK 231 (683)
Q Consensus 153 v~~~~~q~~~~~~~~~~d~~~~~l~~~v~~~l~~~~~~~~~d~~~l~~~~~~l~~~-~~~~~~~E~~~l~~e~~~~~~~~ 231 (683)
+...+...|...+..+. +.+..+...+..++....+ +.++..-..+.+. +...+...+..+..+. +.
T Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~l~~~~~~------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~~ 184 (281)
T 2c2l_A 117 LRIAKKKRWNSIEERRI-HQESELHSYLTRLIAAERE------RELEECQRNHEGHEDDGHIRAQQACIEAKH-----DK 184 (281)
T ss_dssp HHHHHHHHHHHHHHTCC-CCCCHHHHHHHHHHHHHHH------HHHTTTSGGGTTTSCHHHHTHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH------HHHHHHHhhhccccchhhhhhHHHHHHHHH-----HH
Confidence 66665554433333333 4455555444443321110 1222222233332 1222222221111110 01
Q ss_pred cHHHHHHHHHHHHhhhhhccccccCCcchHHHhhcccCCCCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCC
Q 048793 232 SKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGH 311 (683)
Q Consensus 232 ~~~~~~~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~ 311 (683)
.......+ |...... .....+|++|+||||+++|+|||+++|||||||.||++|+..++
T Consensus 185 ~~~~a~~~-----------f~~a~~~----------~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~ 243 (281)
T 2c2l_A 185 YMADMDEL-----------FSQVDEK----------RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG 243 (281)
T ss_dssp HHHHHHHH-----------HHHSSCT----------TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC
T ss_pred HHHHHHHH-----------HHhhhcc----------ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC
Confidence 11122222 2211110 11357899999999999999999999999999999999999877
Q ss_pred CCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 048793 312 NTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFD 348 (683)
Q Consensus 312 ~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~~ 348 (683)
.+||.|+++++..+++||..|+++|++|+.+|+|...
T Consensus 244 ~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~~ 280 (281)
T 2c2l_A 244 HFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVED 280 (281)
T ss_dssp SSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSC
T ss_pred CCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCCC
Confidence 7799999999999999999999999999999998654
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.84 E-value=2.5e-19 Score=211.85 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=237.5
Q ss_pred hHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHh
Q 048793 365 ALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILN 444 (683)
Q Consensus 365 ~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~n 444 (683)
.+. ..|.++.|+++|+++ ++..+..|+++|.+++...+.++..+.+.|++|.|+.+|.+. +..++..|+.+|.+
T Consensus 229 ~i~-~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~----~~~v~~~a~~aL~~ 302 (780)
T 2z6g_A 229 AIF-KSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQI 302 (780)
T ss_dssp HHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHH
Confidence 444 458999999999998 999999999999999999888899999999999999999998 89999999999999
Q ss_pred ccc-CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793 445 LSI-LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 445 Ls~-~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A 523 (683)
|+. +++++..++.. |+++.|+.+|+++.....+..++.+|.+|+....++..+.. .|+++.|+.+|.+++...+..|
T Consensus 303 La~~~~e~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a 380 (780)
T 2z6g_A 303 LAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNC 380 (780)
T ss_dssp HHTTCHHHHHHHHTT-THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHH
T ss_pred HhcCChHHHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHHH
Confidence 986 57889888887 99999999999885566777899999999999999999988 8999999999999888999999
Q ss_pred HHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HHH---HHHcCchHHHHHHHhc-CC-hH
Q 048793 524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TAI---VAAYNTIKKLCILLRE-GS-DT 596 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e~---~~~~g~v~~Lv~lL~~-~s-~~ 596 (683)
+++|.+|+...... ....|+++.|+++|.+. .+....|+.+|.+++.. .+. +...|+++.|+.+|.. ++ ..
T Consensus 381 ~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 458 (780)
T 2z6g_A 381 LWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458 (780)
T ss_dssp HHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHH
Confidence 99999999865432 23368899999999854 45578888888888754 333 3345889999999976 33 48
Q ss_pred HHHHHHHHHHHHHhcCCch-HHHHHHhcCCcHHHHHHHhhcCCH-HHHHHHHHHHHHHHh
Q 048793 597 SRESAAATLVTICRKGGSE-MVADIAAVPGIERVIWELMESGTA-RARRKAAALLRILRR 654 (683)
Q Consensus 597 ~ke~A~~aL~~L~~~~~~~-~~~~~~~~~G~~~~L~~Ll~~~~~-~~k~kA~~lL~~l~~ 654 (683)
+++.|+++|.+|+...++. ..+..+...|+++.|+.++.+++. .+++.|.++|.++..
T Consensus 459 v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 9999999999998765442 234456778999999999998864 999999999999985
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.81 E-value=5.6e-19 Score=174.28 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=166.5
Q ss_pred HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 412 EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 412 ~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
..|..|.|+.+|.++ |+.++..|+++|.+++. +++++..+.+. |+++.|+.+|+++ +++++..|+++|.+|+.
T Consensus 10 ~~~~~~~l~~LL~s~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 10 HGSELPQMVQQLNSP----DQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIAS 83 (210)
T ss_dssp ---CHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence 458999999999999 99999999999999995 56778888887 9999999999988 79999999999999995
Q ss_pred -CcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHH
Q 048793 491 -VHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAV 567 (683)
Q Consensus 491 -~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L 567 (683)
.++++..+.. .|+++.|+.+|.++++.+++.|+++|.||+.+. +++..+++.|+++.|+++|.++ .+....|+.+|
T Consensus 84 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 84 GGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp SCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5567888887 899999999999999999999999999999754 4667888999999999999864 45588888888
Q ss_pred HHcCCc-HHHH---HHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 568 VKRGGL-TAIV---AAYNTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 568 ~~l~~~-~e~~---~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
.+++.. ++.. ...|+++.|+.++.+.++.+++.|+++|.+|+.
T Consensus 163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 887754 4433 344889999999999999999999999999985
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.79 E-value=3.2e-20 Score=156.86 Aligned_cols=73 Identities=32% Similarity=0.484 Sum_probs=69.0
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcC
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR 344 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 344 (683)
..+|++|+||||+++|+|||+++|||||||.||++|+.. +.+||.|++++...+++||..|+++|+.|+.+|+
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999999985 6799999999999999999999999999998874
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.79 E-value=4.9e-20 Score=160.41 Aligned_cols=73 Identities=33% Similarity=0.496 Sum_probs=69.4
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcC
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR 344 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 344 (683)
..+|++|+||||+++|+|||+++|||||||.||++|+.. +.+||.|++++...+++||..|+++|+.|+.+|+
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999999984 7899999999999999999999999999999875
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.79 E-value=7.8e-20 Score=158.50 Aligned_cols=75 Identities=32% Similarity=0.431 Sum_probs=70.9
Q ss_pred CCCCCcccccccccCCCCceecCCc-cccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCC
Q 048793 271 ANVPADFRCPISLELMRNPVVVATG-QTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIP 346 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g-~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 346 (683)
..+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++...+++||..|+++|+.|+.++++.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 4689999999999999999999999 99999999999986 679999999999999999999999999999998764
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=1.2e-17 Score=174.44 Aligned_cols=181 Identities=19% Similarity=0.125 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccCcH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEGAL 462 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~I 462 (683)
+.+.+..|+..|..++... +|...+.+.|++|.|+. +|.++ ++.+++.|+++|.|++.++ ..+..+++. |++
T Consensus 53 ~~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~----~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-g~l 126 (296)
T 1xqr_A 53 DQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAG----AAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THH
T ss_pred CHHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCH
Confidence 4578899999999999855 48888999999999999 99998 9999999999999999764 567788887 999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC-cchhHHH
Q 048793 463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD-RETVGRL 540 (683)
Q Consensus 463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~i 540 (683)
++|+.+|+++.+..+++.|+++|.+|+.+.. ....+.. .|+++.|+.+|++++..+++.|+++|.||+.+ ++.+..+
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v 205 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999975468999999999999997654 4556666 79999999999999999999999999999875 5688999
Q ss_pred HhcCchHHHHHHhccC-chhHHHHHHHHHHcCC
Q 048793 541 VERGIVEIVAEAMDVL-PEESVTILEAVVKRGG 572 (683)
Q Consensus 541 v~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~ 572 (683)
+++|++++|+.+|... .+..+.++..|.++..
T Consensus 206 v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 9999999999999853 5567777777776553
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.6e-17 Score=186.60 Aligned_cols=273 Identities=11% Similarity=0.100 Sum_probs=214.5
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCC-CCCCCChhhHHHHHHHHHhcccCc
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGP-DTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s-~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
.++.++++|.++ +.+.+..|++.|..++.+. +.|..+++. |+++.|+.+++. . +..+...++.+|.||+.+.
T Consensus 335 La~~~~~~L~~~-~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~----d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 335 LSEIFINAISRR-IVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQK----MTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HHHHHHHHTTTC-CHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhcCCC
Confidence 456788888887 7777999999999998865 588888875 789999999996 5 7788999999999997531
Q ss_pred h---------------------------------------hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 450 A---------------------------------------NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 450 ~---------------------------------------~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
+ ++..+.+. |+|+.|+.+++++ ++.+++.|+++|.+||.
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea-GvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT-ELISFLKREMHNL-SPNCKQQVVRIIYNITR 486 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT-THHHHHHHHGGGS-CHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-cCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 1 45566677 9999999999998 79999999999999999
Q ss_pred CcchhhHHhhhcccHHHHHHhhcCCChh---HHHHHHHHHHHhcCCcchhHHHH--h-cCchHHHHHHhcc--Cch----
Q 048793 491 VHAHRKTLGRKTRVVKGLMDLVKGGPTS---SKRDALVAILNLAGDRETVGRLV--E-RGIVEIVAEAMDV--LPE---- 558 (683)
Q Consensus 491 ~~~~~~~i~~~~G~i~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv--~-aG~V~~Lv~lL~~--~~~---- 558 (683)
..++|..++. .|++++|+.+|.+++.. ++..|+.||.+|....+....+- . .|+|++|+++|.. +..
T Consensus 487 d~~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 487 SKNFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp SGGGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred CHHHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence 9999999999 89999999999988644 78999999999987665444331 1 3999999999983 211
Q ss_pred --------h-HHHHHHHHHHcCCcH-----HH---HHH-cCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 048793 559 --------E-SVTILEAVVKRGGLT-----AI---VAA-YNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADI 620 (683)
Q Consensus 559 --------~-~~~aL~~L~~l~~~~-----e~---~~~-~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~ 620 (683)
. ..+|+.+|.|+++.+ +. +.. .|+++.|..+|.+.+...|+.|++++.+|+.+... ....+
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~-i~~k~ 644 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT-IAAKF 644 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG-TGGGT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH-HHHHH
Confidence 1 446666666655432 22 333 37899999999999999999999999999974321 10122
Q ss_pred HhcC-----CcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 621 AAVP-----GIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 621 ~~~~-----G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.... +-+++|+.|+.+++.++|+.|+++|.++..
T Consensus 645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 2111 137899999999999999999999999953
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.71 E-value=6.1e-18 Score=140.63 Aligned_cols=75 Identities=57% Similarity=1.104 Sum_probs=71.4
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCC
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRI 345 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 345 (683)
..+|++|.||||+++|.|||+++|||+||+.||++|+..|+.+||.|++++...++.||..|+++|+.|..+|++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999999999998788999999999988999999999999999999886
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.68 E-value=6e-16 Score=161.58 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=144.0
Q ss_pred hhhhHHHHHH-HhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLIN-KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~-~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
..|+++.|+. +|.++ +++++..|+++|.+++.+++.+|..+++.|++|.|+.+|.+.. +..+++.|+++|.|++.
T Consensus 79 ~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~---~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 79 QLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA---CDTVRVKALFAISCLVR 154 (296)
T ss_dssp HTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHc
Confidence 4678999999 99998 9999999999999999999999999999999999999998531 78899999999999997
Q ss_pred Cc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHH
Q 048793 448 LE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALV 525 (683)
Q Consensus 448 ~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
+. .....+... |+++.|+.+|+++ +..++..|+++|.+|+.. ++.+..+++ .|++++|+.+|.+++..+++.|+.
T Consensus 155 ~~~~~~~~~~~~-ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~~~d~~v~~~al~ 231 (296)
T 1xqr_A 155 EQEAGLLQFLRL-DGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRTEHSPFHEHVLG 231 (296)
T ss_dssp TCHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTSCCSTHHHHHHH
T ss_pred CCcHHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHcCCChhHHHHHHH
Confidence 64 556677777 9999999999998 799999999999999875 557777777 899999999999999999999999
Q ss_pred HHHHhcCCcc
Q 048793 526 AILNLAGDRE 535 (683)
Q Consensus 526 aL~nLs~~~~ 535 (683)
+|.||.....
T Consensus 232 aL~~l~~~~~ 241 (296)
T 1xqr_A 232 ALCSLVTDFP 241 (296)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhCCh
Confidence 9999998743
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=141.74 Aligned_cols=73 Identities=30% Similarity=0.568 Sum_probs=64.7
Q ss_pred CCCcccccccccCCCCceecC-CccccchhhHHHHHhcC-----CCCCCCCCCc---cCCCCCcchHHHHHHHHHHHHHc
Q 048793 273 VPADFRCPISLELMRNPVVVA-TGQTYDRQSISLWIESG-----HNTCPKTGQT---LAHTNLVTNTALKNLIALWCREQ 343 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~g-----~~~cP~~~~~---l~~~~l~pn~~l~~~i~~~~~~~ 343 (683)
.+++|+||||+++|+|||+++ |||||||.||++||..+ ..+||.|+.+ +...+++||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 578999999999999999996 99999999999999863 4689995544 88899999999999999999877
Q ss_pred CC
Q 048793 344 RI 345 (683)
Q Consensus 344 ~~ 345 (683)
+.
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.57 E-value=4.5e-15 Score=171.76 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=69.7
Q ss_pred CCCCCcccccccccCCCCceecCCc-cccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCC
Q 048793 271 ANVPADFRCPISLELMRNPVVVATG-QTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRI 345 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g-~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 345 (683)
.++|++|+||||+++|+|||++++| +||||++|++|+.. +.+||.|+++|.+.+++||++||+.|++||.+++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999998 79999999999987 67999999999999999999999999999998753
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.55 E-value=9.5e-16 Score=120.45 Aligned_cols=54 Identities=19% Similarity=0.395 Sum_probs=49.7
Q ss_pred cccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchH
Q 048793 276 DFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNT 330 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~ 330 (683)
.|.||||+++|+|||++ +|||||||.+|++|+.. +.+||+|+++|...+|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 99999999999999986 45799999999999999985
No 48
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.47 E-value=5.7e-14 Score=120.34 Aligned_cols=75 Identities=23% Similarity=0.434 Sum_probs=67.6
Q ss_pred CCCCCcccccccccCCCCceecC-CccccchhhHHHHHhc-CCCCCCCCCCcc-CCCCCcchHHHHHHHHHHHHHcCC
Q 048793 271 ANVPADFRCPISLELMRNPVVVA-TGQTYDRQSISLWIES-GHNTCPKTGQTL-AHTNLVTNTALKNLIALWCREQRI 345 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~-g~~~cP~~~~~l-~~~~l~pn~~l~~~i~~~~~~~~~ 345 (683)
..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.+|..++++|+.|...++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 46789999999999999999999 9999999999999975 457999999997 567899999999999999987764
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.5e-13 Score=137.04 Aligned_cols=71 Identities=15% Similarity=0.404 Sum_probs=63.6
Q ss_pred CCCCcccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCC--CCCccCCCCCcchHHHHHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPK--TGQTLAHTNLVTNTALKNLIALWCRE 342 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~--~~~~l~~~~l~pn~~l~~~i~~~~~~ 342 (683)
....+|+||||+++|+|||+. .|||+|||.||++||.. |..+||+ |++++...+++||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 356789999999999999985 99999999999999986 3568999 88999999999999999999998653
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.40 E-value=1.8e-11 Score=137.10 Aligned_cols=278 Identities=14% Similarity=0.113 Sum_probs=212.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL- 448 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~- 448 (683)
..+|+.|+..|.++.-.+.|+.|+..|+.++++ +|..++ .+++|.|+..|+... .|.++...++.+|.++-..
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCC
Confidence 457899999998875689999999999999874 455544 567999999998752 3888899999999886432
Q ss_pred ch-----------------hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHH
Q 048793 449 EA-----------------NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLM 509 (683)
Q Consensus 449 ~~-----------------~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv 509 (683)
++ +...+...++.|+.|+.+|++. +-..|.+++.+|..|+.... ++..|....++|+.||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 21 1223444458899999999987 79999999999999997653 6788886579999999
Q ss_pred HhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhc-CchHHHHHHhccC-----chhHHHHHHHHHHcCC----cHHHHHH
Q 048793 510 DLVKGGPTSSKRDALVAILNLAGDRETVGRLVER-GIVEIVAEAMDVL-----PEESVTILEAVVKRGG----LTAIVAA 579 (683)
Q Consensus 510 ~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a-G~V~~Lv~lL~~~-----~~~~~~aL~~L~~l~~----~~e~~~~ 579 (683)
.+|.+.....+..|+..|.+|+.+..+.++++.. |+++.|+.++..+ ...+..|+.+|.++.. +.....+
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999888889999999999999999998888774 9999999999742 2347888888887552 3456677
Q ss_pred cCchHHHHHHHhcCCh------HHHHH---HHHHHHHHHhcCC----chHHHHHHhcCCcHHHHHHHhhcC--CHHHHHH
Q 048793 580 YNTIKKLCILLREGSD------TSRES---AAATLVTICRKGG----SEMVADIAAVPGIERVIWELMESG--TARARRK 644 (683)
Q Consensus 580 ~g~v~~Lv~lL~~~s~------~~ke~---A~~aL~~L~~~~~----~~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~k 644 (683)
.|+++.|..++..+.. ..-.| +..++..++..++ ....+..+.+.|+++.|+.++... ...++..
T Consensus 253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence 7999999988864321 12234 5555555565433 234466688899999999987765 5678877
Q ss_pred HHHHHHHHHh
Q 048793 645 AAALLRILRR 654 (683)
Q Consensus 645 A~~lL~~l~~ 654 (683)
|...+.-+-+
T Consensus 333 Al~tla~~ir 342 (651)
T 3grl_A 333 TINTVSEVIR 342 (651)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777766555
No 51
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.35 E-value=3.5e-13 Score=122.17 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=62.8
Q ss_pred CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC-CCCcchHHHHHHHHHHHH
Q 048793 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH-TNLVTNTALKNLIALWCR 341 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~~~ 341 (683)
+++++.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..++++++.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 457899999999999999999999999999999999766799999999976 788999999999988754
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.32 E-value=7.9e-13 Score=123.73 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=63.1
Q ss_pred CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC-CCcchHHHHHHHHHHHH
Q 048793 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT-NLVTNTALKNLIALWCR 341 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~-~l~pn~~l~~~i~~~~~ 341 (683)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.+|..++++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999998677999999999877 89999999999998753
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.27 E-value=7.1e-10 Score=124.32 Aligned_cols=277 Identities=13% Similarity=0.116 Sum_probs=204.6
Q ss_pred hhhHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCch-----------------hHHHH-HHhCcHHHHHHhhCCCCCCC
Q 048793 370 KMTASFLINKLATS-QSMEAANDAVYELRSLSKTDSD-----------------SRACI-AEAGAIALLARHLGPDTASR 430 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~-----------------nr~~i-~~~G~Ip~Lv~lL~s~~~~~ 430 (683)
..+.+.|+..|+.+ .|.+....++..|.++...+++ +.+.+ .+.+.|+.|+.+|.+.
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~---- 134 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF---- 134 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC----
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc----
Confidence 45788899999764 4788888999999776544332 12233 3458999999999998
Q ss_pred ChhhHHHHHHHHHhcccCc--hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHH
Q 048793 431 LPNLQVNAVTTILNLSILE--ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGL 508 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~--~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~L 508 (683)
|..++.+++..|..|+.+. .++..|...+++|+.||.+|+.. ....|..|+.+|.+|+....+..+++.-.|+++.|
T Consensus 135 df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~L 213 (651)
T 3grl_A 135 DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERL 213 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHH
Confidence 9999999999999998653 36888987789999999999987 58899999999999999988877777767999999
Q ss_pred HHhhcCCCh----hHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccCch-------hHHH---HHHHHHHcCCc
Q 048793 509 MDLVKGGPT----SSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVLPE-------ESVT---ILEAVVKRGGL 573 (683)
Q Consensus 509 v~lL~~~~~----~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~~~-------~~~~---aL~~L~~l~~~ 573 (683)
+.++..+.. .+..+++.+|.||..++ .|+..+.+.|+++.|..+|..+.+ ...+ ++.++..+...
T Consensus 214 f~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~ 293 (651)
T 3grl_A 214 LDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSP 293 (651)
T ss_dssp HHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCC
Confidence 999976432 46799999999998865 499999999999999999973321 2333 44444433311
Q ss_pred ----------HHHHHHcCchHHHHHHHhcC--ChHHHHHHHHHHHHHHhcCCchHHHHHHhcC---------CcHHHHHH
Q 048793 574 ----------TAIVAAYNTIKKLCILLREG--SDTSRESAAATLVTICRKGGSEMVADIAAVP---------GIERVIWE 632 (683)
Q Consensus 574 ----------~e~~~~~g~v~~Lv~lL~~~--s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~---------G~~~~L~~ 632 (683)
.......|++..|++++... +..++..|..++..+.++++ ..+..+... .++..|..
T Consensus 294 ~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~~~~~p~li~lL~~ 371 (651)
T 3grl_A 294 NNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPSNPPRPAIVVLLMS 371 (651)
T ss_dssp TSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESSSSCEEHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCCCCCcChHHHHHHH
Confidence 22334558889999998754 67788999999999988653 233333322 24444444
Q ss_pred HhhcC-CHHHHHHHHHHHHHHH
Q 048793 633 LMESG-TARARRKAAALLRILR 653 (683)
Q Consensus 633 Ll~~~-~~~~k~kA~~lL~~l~ 653 (683)
++.+. ...+|-.|...++-+-
T Consensus 372 ~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 372 MVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHH
Confidence 45443 5677766666666554
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.22 E-value=4.9e-12 Score=109.82 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=63.5
Q ss_pred CCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHc
Q 048793 273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQ 343 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 343 (683)
+++++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++...++.+|..++++++.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45789999999999999988 99999999999999985 579999999998888999999999999987653
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.18 E-value=1.2e-11 Score=109.12 Aligned_cols=67 Identities=12% Similarity=0.324 Sum_probs=59.9
Q ss_pred CCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCC----CCcchHHHHHHHHHHH
Q 048793 273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHT----NLVTNTALKNLIALWC 340 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~----~l~pn~~l~~~i~~~~ 340 (683)
+++++.||||+++|.|||++ +|||+||+.||.+|+.. ..+||.|++++... .+.+|..+.++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 56889999999999999998 99999999999999986 47999999998765 6789999999888763
No 56
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.17 E-value=9.8e-12 Score=108.11 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=62.0
Q ss_pred CCCcccccccccCCCCcee-cCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHH
Q 048793 273 VPADFRCPISLELMRNPVV-VATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCRE 342 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~-~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~ 342 (683)
+.+++.||||++.|.+||+ ++|||+||+.||.+|+..+..+||.|+.++...++.+|..+..++++.-..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4578999999999999999 999999999999999997657999999999988999998888877766443
No 57
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=1.2e-11 Score=110.88 Aligned_cols=69 Identities=22% Similarity=0.406 Sum_probs=62.7
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW 339 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 339 (683)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++...++.+|..+++.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 367889999999999999999999999999999999987666999999999988899999988888764
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.14 E-value=6e-12 Score=105.69 Aligned_cols=64 Identities=31% Similarity=0.567 Sum_probs=56.3
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhc-----CCCCCCCCCCccCCCCCcchHHHHH
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES-----GHNTCPKTGQTLAHTNLVTNTALKN 334 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~-----g~~~cP~~~~~l~~~~l~pn~~l~~ 334 (683)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++...++.+|..+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 356789999999999999999999999999999999986 3678999999998888888866543
No 59
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=1.6e-11 Score=116.85 Aligned_cols=70 Identities=20% Similarity=0.448 Sum_probs=61.8
Q ss_pred CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccC-CCCCcchHHHHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLA-HTNLVTNTALKNLIALWCR 341 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~-~~~l~pn~~l~~~i~~~~~ 341 (683)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..+..+||.|+.++. ...+.||..+.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 455788999999999999988 999999999999999987889999999985 4568899999999988743
No 60
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=1.5e-12 Score=108.01 Aligned_cols=63 Identities=30% Similarity=0.597 Sum_probs=55.7
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcC------CCCCCCCCCccCCCCCcchHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG------HNTCPKTGQTLAHTNLVTNTALKN 334 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g------~~~cP~~~~~l~~~~l~pn~~l~~ 334 (683)
.+.+++.||||++.+.+|++++|||+||+.||.+|+..+ ..+||.|++++...++.+|..+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 567899999999999999999999999999999999752 568999999998888888876543
No 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=2.4e-11 Score=108.78 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=61.1
Q ss_pred CCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHH
Q 048793 273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCRE 342 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~ 342 (683)
+.+++.||||+++|.|||++ +|||+||+.||.+|+. ..||.|++++...++.+|..+++++..|...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 45789999999999999999 9999999999999987 6899999999888999999999999887543
No 62
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.3e-11 Score=95.60 Aligned_cols=55 Identities=11% Similarity=0.355 Sum_probs=49.5
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCC
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL 326 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l 326 (683)
.+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|++++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 5678999999999999999999999999999999997667899999998876543
No 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=9.7e-12 Score=104.41 Aligned_cols=64 Identities=25% Similarity=0.543 Sum_probs=56.4
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhc-----CCCCCCCCCCccCCCCCcchHHHHH
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES-----GHNTCPKTGQTLAHTNLVTNTALKN 334 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~-----g~~~cP~~~~~l~~~~l~pn~~l~~ 334 (683)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++...++.+|..+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 357789999999999999999999999999999999975 3678999999998888888866543
No 64
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.11 E-value=5.9e-11 Score=97.13 Aligned_cols=59 Identities=24% Similarity=0.448 Sum_probs=50.0
Q ss_pred CCCCCcccccccccCCCCceecC-CccccchhhHHHHHhc-CCCCCCCCCCccC-CCCCcch
Q 048793 271 ANVPADFRCPISLELMRNPVVVA-TGQTYDRQSISLWIES-GHNTCPKTGQTLA-HTNLVTN 329 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~-~~~l~pn 329 (683)
..+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++. ...+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 46788999999999999999999 9999999999999985 3469999999743 4445555
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.11 E-value=6.5e-09 Score=102.03 Aligned_cols=189 Identities=17% Similarity=0.153 Sum_probs=152.6
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
....++.|+..|.++ ++.++..|+..|..+.. .+++|.|+.+|.++ ++.++..|+.+|.++.
T Consensus 17 ~~~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~-- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE----DAWVRRAAADALGQIG-- 78 (211)
T ss_dssp CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS----CHHHHHHHHHHHHHHC--
T ss_pred CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC----CHHHHHHHHHHHHhhC--
Confidence 356788999999988 99999999999987632 36899999999998 9999999999998764
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
.. ++++.|+..|.+. ++.+|..|+.+|..+.. .++++.|+.+|.++++.++..|+.+|.
T Consensus 79 --------~~-~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 79 --------DE-RAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALG 137 (211)
T ss_dssp --------CG-GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred --------CH-HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22 6899999999887 79999999999998742 468999999999999999999999999
Q ss_pred HhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHH
Q 048793 529 NLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVT 607 (683)
Q Consensus 529 nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~ 607 (683)
++.. ..+++.|+.+|.+. +.....++..|..+.. ...++.|..++...++.++..|..+|..
T Consensus 138 ~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 138 EIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 9843 35789999999754 3457777777777643 1246788889999999999999999988
Q ss_pred HHhcCC
Q 048793 608 ICRKGG 613 (683)
Q Consensus 608 L~~~~~ 613 (683)
+....+
T Consensus 201 ~~~~~~ 206 (211)
T 3ltm_A 201 HKSFNH 206 (211)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 876543
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.11 E-value=5.6e-09 Score=107.28 Aligned_cols=228 Identities=10% Similarity=0.000 Sum_probs=164.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
....++.|+..|.++ ++.++..|++.|..+.. .++++.|+.+|.+. ++.++..|+.+|.++...
T Consensus 21 ~~~~i~~L~~~L~~~-~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 21 KKLNDDELFRLLDDH-NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK----NYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp HTSCHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCC
T ss_pred HHhhHHHHHHHHHcC-CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCC----CHHHHHHHHHHHHHhccc
Confidence 456789999999988 99999999999988751 35789999999998 999999999999888643
Q ss_pred chhHHHHhcccCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIE-VLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~-lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
..... ..++.|.. ++++. ++.+|..++++|..+...... .. ..+++.|+.+|.++++.++..|+.+|
T Consensus 85 ~~~~~------~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~~~~vR~~a~~aL 152 (280)
T 1oyz_A 85 KKCED------NVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDKSTNVRRATAFAI 152 (280)
T ss_dssp TTTHH------HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cccch------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 22111 13344443 34455 799999999999998643211 12 46789999999998999999999999
Q ss_pred HHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHH
Q 048793 528 LNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLV 606 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~ 606 (683)
.++.. .++++.|+.+|.+. ......++..|..+..... ..++.|..++...++.++..|+.+|.
T Consensus 153 ~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 153 SVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS-----DIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp HTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-----HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-----HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 88753 35899999999854 3456667777766542111 24678888888888999999999887
Q ss_pred HHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 607 TICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 607 ~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.+.. ..+++.|..++.+++ ++..|...|..+..
T Consensus 218 ~~~~-------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 218 YRKD-------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HTTC-------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HhCC-------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 7652 234666666666644 66677666666543
No 67
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.10 E-value=1.4e-11 Score=110.06 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=60.4
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC-------CCCcchHHHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH-------TNLVTNTALKNLIALWC 340 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~-------~~l~pn~~l~~~i~~~~ 340 (683)
...++|.||||++.|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..+.+.|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456899999999999999999999999999999998878899999998763 45667888988888874
No 68
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.2e-11 Score=99.80 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=52.6
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKN 334 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~ 334 (683)
...+++.||||++.|.+||+++|||+||+.||.+|+.. ..+||.|++++. ..+.+|..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 45678999999999999999999999999999999986 678999999986 56778855533
No 69
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=94.16 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=51.7
Q ss_pred CCCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793 271 ANVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN 329 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn 329 (683)
..+.+++.||||++.|.||+++ +|||+||+.||.+|+.. ..+||.|++++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3567889999999999999987 99999999999999986 6799999999988777655
No 70
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=6.1e-11 Score=105.18 Aligned_cols=67 Identities=19% Similarity=0.409 Sum_probs=56.6
Q ss_pred CCcccccccccCCCCceecCCccccchhhHHHHHhcC--CCCCCCCCCccCCCCCcchHHHHHHHHHHH
Q 048793 274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG--HNTCPKTGQTLAHTNLVTNTALKNLIALWC 340 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 340 (683)
.+++.||||++.+.+|++++|||+||+.||.+|+..+ ..+||.|++++...++.+|..+.++++.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 4678899999999999999999999999999999853 368999999999888888866555555443
No 71
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.05 E-value=7.5e-11 Score=108.79 Aligned_cols=63 Identities=17% Similarity=0.374 Sum_probs=51.3
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHH
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWC 340 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 340 (683)
+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++... .+|..+...|..+.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 57889999999999999999999999999999985 67899999987543 23555555555543
No 72
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.04 E-value=2.1e-08 Score=97.64 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=150.4
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
+..+.+++.|.++ ++.++..|+..|..+.. .++++.|+.+|.++ ++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~----~~~vr~~a~~~L~~~~---- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE----DAWVRRAAADALGQIG---- 73 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHC----
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC----CHHHHHHHHHHHHhhC----
Confidence 4567899999999 99999999999987642 36799999999988 9999999999997763
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
.. ++++.|+..|.+. ++.+|..|+++|..+.. .++++.|+.+|.++++.++..|+++|.++
T Consensus 74 ------~~-~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 74 ------DE-RAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp ------CG-GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ------CH-HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 22 6899999999887 79999999999988632 46899999999999999999999999988
Q ss_pred cCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793 531 AGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC 609 (683)
Q Consensus 531 s~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~ 609 (683)
.. .++++.|+.++.+. ......|+..|..+.. + ..++.|..++...++.++..|..+|..+-
T Consensus 135 ~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 135 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-E------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp TC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-H------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-h------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 43 46889999999864 3457777777777643 2 24678888898899999999999887653
No 73
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.04 E-value=1.1e-08 Score=100.36 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=151.8
Q ss_pred hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
.+.++.|+.+|.++ ++.++..|+.+|..+.. . ++++.|+..|.++ ++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~----~~~vR~~A~~~L~~~~~----------~-~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~--- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD----------E-RAVEPLIKALKDE-DAWVRRAAADALGQIG--- 78 (211)
T ss_dssp GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC----------G-GGHHHHHHHTTCS-CHHHHHHHHHHHHHHC---
T ss_pred HhHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC----------c-cHHHHHHHHHcCC-CHHHHHHHHHHHHhhC---
Confidence 47899999999998 99999999999987532 2 6899999999988 7999999999998764
Q ss_pred chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG 571 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~ 571 (683)
. .++++.|+.+|.++++.++..|+.+|.++.. .++++.|+++|.+. ......|+..|..+.
T Consensus 79 -------~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 79 -------D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp -------C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred -------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 2 5789999999999999999999999998853 35789999999754 445777777777764
Q ss_pred CcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793 572 GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI 651 (683)
Q Consensus 572 ~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~ 651 (683)
. ...++.|..++...++.++..|+.+|..+.. ..+++.|..++.++++.+|+.|...|..
T Consensus 141 ~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 141 D-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp C-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3 2367889999988899999999999888742 1346778889999999999999999998
Q ss_pred HHhhhc
Q 048793 652 LRRWAA 657 (683)
Q Consensus 652 l~~~~~ 657 (683)
+.....
T Consensus 201 ~~~~~~ 206 (211)
T 3ltm_A 201 HKSFNH 206 (211)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 877543
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=111.34 Aligned_cols=68 Identities=22% Similarity=0.410 Sum_probs=62.0
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW 339 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 339 (683)
.++++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|+.++...++.||..+.+.|.++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 67899999999999999999999999999999999987667999999999988889998888877753
No 75
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.5e-10 Score=92.99 Aligned_cols=56 Identities=21% Similarity=0.543 Sum_probs=49.0
Q ss_pred CCCCCcccccccccCCCCceecCCccccchhhHHHHHhc--CCCCCCCCCCccCCCCC
Q 048793 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKTGQTLAHTNL 326 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~--g~~~cP~~~~~l~~~~l 326 (683)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +..+||.|++++...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 357789999999999999999999999999999999973 46689999998876543
No 76
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.99 E-value=1.4e-10 Score=103.63 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCc-chHHHHHHHHH
Q 048793 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV-TNTALKNLIAL 338 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~-pn~~l~~~i~~ 338 (683)
+++++.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++...++. ++..+.+++.+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4567899999999999999999999999999999998677999999999877765 45566665554
No 77
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.98 E-value=7.5e-11 Score=109.00 Aligned_cols=67 Identities=15% Similarity=0.321 Sum_probs=56.7
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccC---------CCCCcchHHHHHHHHH
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLA---------HTNLVTNTALKNLIAL 338 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~---------~~~l~pn~~l~~~i~~ 338 (683)
.+.++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|++++. ...+.|+..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 467899999999999999999999999999999999877779999998643 2345588777777764
No 78
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.98 E-value=2.3e-08 Score=97.34 Aligned_cols=185 Identities=19% Similarity=0.185 Sum_probs=151.2
Q ss_pred hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
.+..+.++.+|.++ ++.++..|+.+|..+.. . ++++.|+..|.++ ++.+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~----------~-~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~--- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD----------E-RAVEPLIKALKDE-DAWVRRAAADALGQIG--- 73 (201)
T ss_dssp HHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC----------G-GGHHHHHHHTTCS-SHHHHHHHHHHHHHHC---
T ss_pred CcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC----------h-hHHHHHHHHHcCC-CHHHHHHHHHHHHhhC---
Confidence 46789999999999 99999999999987542 2 6899999999887 7999999999998763
Q ss_pred chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG 571 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~ 571 (683)
. .++++.|+.+|.++++.++..|+++|.++.. .++++.|+.+|.+. ......|+..|..+.
T Consensus 74 -------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 74 -------D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp -------C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred -------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2 4689999999999999999999999998743 35789999999754 345677777777664
Q ss_pred CcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793 572 GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI 651 (683)
Q Consensus 572 ~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~ 651 (683)
. ...++.|..++.+.++.++..|+.+|..+.. . .+++.|..++.++++.+|..|...|..
T Consensus 136 ~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 136 D-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E----------RVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp C-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H----------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h----------hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3 2467889999998999999999999888732 1 246778888999999999999999887
Q ss_pred HHh
Q 048793 652 LRR 654 (683)
Q Consensus 652 l~~ 654 (683)
+..
T Consensus 196 l~~ 198 (201)
T 3ltj_A 196 HKS 198 (201)
T ss_dssp CC-
T ss_pred HHh
Confidence 653
No 79
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.1e-10 Score=91.22 Aligned_cols=55 Identities=29% Similarity=0.536 Sum_probs=49.4
Q ss_pred Cccccccccc-CCCCc----eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793 275 ADFRCPISLE-LMRNP----VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN 329 (683)
Q Consensus 275 ~~f~CPis~~-~m~dP----v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn 329 (683)
+++.||||++ .+.+| ++++|||+|++.||.+|+..+...||.|++++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777899999999988877765
No 80
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=6.3e-10 Score=87.83 Aligned_cols=46 Identities=26% Similarity=0.625 Sum_probs=41.8
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhc--CCCCCCCC
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKT 317 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~--g~~~cP~~ 317 (683)
.+.+++.||||++.+.+||+++|||+|++.||.+|++. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 56789999999999999999999999999999999985 45689986
No 81
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.88 E-value=1.7e-08 Score=120.27 Aligned_cols=272 Identities=13% Similarity=0.117 Sum_probs=187.1
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHH--H--HHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRAC--I--AEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~--i--~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 446 (683)
+.++.|+..+.++ ++..+..|+..|..++++.+..-.. + .-.+.+|.|+.++.+. ++.++..|+.+|.++.
T Consensus 128 ~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~----~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 128 DLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS----SPKIRSHAVACVNQFI 202 (852)
T ss_dssp THHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS----SHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHH
Confidence 3567788999988 8999999999999998765422110 0 0134677788888877 9999999999999887
Q ss_pred cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
...... .....++.++.+..++.++ +.++|..|+.+|..++........-.- .+.++.++.++.+.++.++..|+..
T Consensus 203 ~~~~~~-~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~ 279 (852)
T 4fdd_A 203 ISRTQA-LMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEF 279 (852)
T ss_dssp TTTCHH-HHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hcccHH-HHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHH
Confidence 543221 1111125788888888877 799999999999999875432211111 3688888899988888899999999
Q ss_pred HHHhcCCcchhHHHHh--cCchHHHHHHhc----------cC----c---------hh---HHHHHHHHHHcCCcHHHHH
Q 048793 527 ILNLAGDRETVGRLVE--RGIVEIVAEAMD----------VL----P---------EE---SVTILEAVVKRGGLTAIVA 578 (683)
Q Consensus 527 L~nLs~~~~n~~~iv~--aG~V~~Lv~lL~----------~~----~---------~~---~~~aL~~L~~l~~~~e~~~ 578 (683)
+..++.....+..+-. ...++.|+..+. .+ . .. +..++..|+...+. ....
T Consensus 280 l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~ 358 (852)
T 4fdd_A 280 WLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLP 358 (852)
T ss_dssp HHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHH
Confidence 9999876543332211 255677777762 11 0 01 33444444432221 1111
Q ss_pred HcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 579 AYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 579 ~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
..++.+...+.+.+++.|+.|+.+|.+++.+.+. .....+ .++++.|..++.+.++++|..|.+.|..+..+-
T Consensus 359 --~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 359 --HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 2356666677778999999999999999876543 222222 467899999999999999999999999988854
No 82
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.86 E-value=7.1e-10 Score=89.66 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=50.9
Q ss_pred CCCCcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793 272 NVPADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN 329 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn 329 (683)
...+++.||||++.+.+| ++++|||+|++.||.+|+.. ..+||.|++++...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 456789999999999999 89999999999999999986 4699999999988887765
No 83
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.82 E-value=1.7e-07 Score=96.13 Aligned_cols=200 Identities=14% Similarity=0.025 Sum_probs=151.4
Q ss_pred HHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 048793 410 IAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLS 489 (683)
Q Consensus 410 i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls 489 (683)
+...+.++.|+..|.++ ++.++..|+.+|.++. . +++++.|+.+|++. ++.+|..|+.+|..+.
T Consensus 19 ~~~~~~i~~L~~~L~~~----~~~vr~~A~~~L~~~~----------~-~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDH----NSLKRISSARVLQLRG----------G-QDAVRLAIEFCSDK-NYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHTSCHHHHHHHTTCS----SHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHSC
T ss_pred HHHHhhHHHHHHHHHcC----CHHHHHHHHHHHHccC----------C-chHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 34568999999999998 9999999999998875 2 26889999999987 7999999999999886
Q ss_pred cCcchhhHHhhhcccHHHHHH-hhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHH
Q 048793 490 GVHAHRKTLGRKTRVVKGLMD-LVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAV 567 (683)
Q Consensus 490 ~~~~~~~~i~~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L 567 (683)
..... + ...++.|.. ++.++++.++..|+++|.++...... ....+++.|+.+|.+. +.....++..|
T Consensus 83 ~~~~~---~---~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL 152 (280)
T 1oyz_A 83 ICKKC---E---DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAI 152 (280)
T ss_dssp CCTTT---H---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccccc---c---hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 43221 1 123444543 45677888999999999998743211 1234688899998754 34566677777
Q ss_pred HHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHH
Q 048793 568 VKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAA 647 (683)
Q Consensus 568 ~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~ 647 (683)
..+.. ...++.|+.++...++.++..|+++|..+.... ..+++.|..++.++++.+|..|.+
T Consensus 153 ~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 153 SVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-----------SDIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp HTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-----------HHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-----------HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 76543 247899999999999999999999998875321 134678889999999999999999
Q ss_pred HHHHHH
Q 048793 648 LLRILR 653 (683)
Q Consensus 648 lL~~l~ 653 (683)
.|..+.
T Consensus 215 aL~~~~ 220 (280)
T 1oyz_A 215 GLSYRK 220 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 998765
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.5e-09 Score=89.37 Aligned_cols=53 Identities=25% Similarity=0.434 Sum_probs=47.4
Q ss_pred CCCCcccccccccCCCC----ceecCCccccchhhHHHHHhcC--CCCCCCCCCccCCC
Q 048793 272 NVPADFRCPISLELMRN----PVVVATGQTYDRQSISLWIESG--HNTCPKTGQTLAHT 324 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~d----Pv~~~~g~ty~r~~I~~w~~~g--~~~cP~~~~~l~~~ 324 (683)
.+.+++.||||++.+.+ |++++|||+||+.||.+|+..+ ..+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 56788999999999999 9999999999999999999864 47899999987654
No 85
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=82.58 Aligned_cols=46 Identities=26% Similarity=0.706 Sum_probs=41.5
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhc--CCCCCCCC
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKT 317 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~--g~~~cP~~ 317 (683)
.+.+++.||||++.+.+|++++|||+|++.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46688999999999999999999999999999999875 56789986
No 86
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.2e-09 Score=88.58 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=45.9
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT 324 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~ 324 (683)
...+++.||||++.+.+||+++|||+|++.||.+|+.. ..+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 34578999999999999999999999999999999986 47999999887543
No 87
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.75 E-value=1.7e-09 Score=85.35 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=48.2
Q ss_pred CcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793 275 ADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN 329 (683)
Q Consensus 275 ~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn 329 (683)
+++.||||++.+.+| ++++|||+|++.||.+|+.. ..+||.|++++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 568899999999998 88899999999999999987 6799999999988777654
No 88
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.74 E-value=9.4e-09 Score=84.67 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=47.0
Q ss_pred CCCCcccccccccCC--CCceecC--CccccchhhHHHHHhcCCCCCCCCCCccCCCCC
Q 048793 272 NVPADFRCPISLELM--RNPVVVA--TGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL 326 (683)
Q Consensus 272 ~~p~~f~CPis~~~m--~dPv~~~--~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l 326 (683)
...+++.||||++.+ .|+++.+ |||+||+.||.+|++.+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999998 5677776 999999999999998777899999999876543
No 89
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.73 E-value=9.8e-08 Score=113.68 Aligned_cols=270 Identities=11% Similarity=0.027 Sum_probs=184.3
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
..++.++..+.+. ++++|..|+++|..+....+. .+.. .+.++.|..++.++ +..++..|+.+|.+++..
T Consensus 174 ~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~----~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 174 IMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDE----EPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp HHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHh
Confidence 4567788888877 899999999999988765431 1111 26788899999888 999999999999999864
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhcccHHHHHHhh-----------cC--
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKTRVVKGLMDLV-----------KG-- 514 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~G~i~~Lv~lL-----------~~-- 514 (683)
....-.-.- ++.++.++.++++. +.+++..|+.++..++.....+..+. .....+|.|+..+ .+
T Consensus 246 ~~~~~~~~l-~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ 323 (852)
T 4fdd_A 246 RMDRLLPHM-HNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323 (852)
T ss_dssp CHHHHGGGH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred CHHHHHHHH-HHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence 322110011 25778888888876 68999999999999987653333221 1125677777776 22
Q ss_pred ---------CChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HHHHHH--cC
Q 048793 515 ---------GPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TAIVAA--YN 581 (683)
Q Consensus 515 ---------~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e~~~~--~g 581 (683)
.+...++.|+.+|..|+..... .++ ..+++.+.+++.+. ......|+..|..++.. .+.... ..
T Consensus 324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 1224578899999988764321 122 24567777777643 34577777788777643 222211 13
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
.++.++..+...++.+|..|+++|..++...+.......+ .++++.|+..+.++++++|+.|.+.|..+.+.
T Consensus 401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4677888888889999999999999988742210000111 25678888888889999999999999988764
No 90
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=6.7e-09 Score=83.25 Aligned_cols=52 Identities=21% Similarity=0.437 Sum_probs=46.3
Q ss_pred CCCCCcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 271 ANVPADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 271 ~~~p~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
..+.+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3567889999999999998 88999999999999999986 6799999988753
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.66 E-value=2e-08 Score=82.68 Aligned_cols=57 Identities=25% Similarity=0.511 Sum_probs=48.0
Q ss_pred CCCCcccccccccCCCCce---ecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793 272 NVPADFRCPISLELMRNPV---VVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN 329 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv---~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn 329 (683)
...+++.||||++.|.+|. +++|||+|++.||.+|+.. +.+||.|++++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 4557889999999998774 4599999999999999975 5799999999887766654
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.65 E-value=7.9e-07 Score=100.29 Aligned_cols=263 Identities=10% Similarity=0.077 Sum_probs=184.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
...++.+...+.+. ++.++..+++.|..++..-.. .. .....+|.+..+|.+. ++.++..++.+|..+...-
T Consensus 323 ~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~----~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 323 SQILPCIKELVSDA-NQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDE----CPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCS----CHHHHHHHHTTCHHHHHHS
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHHHhc
Confidence 34567788888887 899999999999988754321 11 2345889999999988 8999999998887775321
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
.. ..+. . ..++.|..++++. +...|..++.+|..++..-... ... ...++.++.+|.+++..+++.|+.+|..
T Consensus 395 ~~-~~~~-~-~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 395 GI-RQLS-Q-SLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE--FFD-EKLNSLCMAWLVDHVYAIREAATSNLKK 467 (588)
T ss_dssp CH-HHHH-H-HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG--GCC-HHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred CH-HHHH-H-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH--HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 11 1121 2 5788888888876 7999999999999887532211 112 3578899999998888899999999999
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccCc-hhHHHHHHHHHHcCCcH-HHHHHcCchHHHHHHHhcCChHHHHHHHHHHHH
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVLP-EESVTILEAVVKRGGLT-AIVAAYNTIKKLCILLREGSDTSRESAAATLVT 607 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~l~~~~-e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~ 607 (683)
++..-+.. .....++|.|+.++.+.. .....++..+..++..- ........++.|.+.+....+.+|..++++|..
T Consensus 468 l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 545 (588)
T 1b3u_A 468 LVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545 (588)
T ss_dssp HHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHH
Confidence 97643322 223456788887776432 33444444444433211 111112356788888888889999999999999
Q ss_pred HHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 608 ICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 608 L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
++..-+.... ...+++.|..+..+.+.++|..|...+..+.+
T Consensus 546 l~~~~~~~~~-----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 546 IGPILDNSTL-----QSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HGGGSCHHHH-----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHhchhhh-----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 9986554321 13567888888888999999999999987653
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.64 E-value=1.5e-06 Score=97.99 Aligned_cols=170 Identities=11% Similarity=0.133 Sum_probs=122.2
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
..++.+...+... ++.+|..|+..|..++...... ......+|.|..++.++ +..++..|+.+|..++..-.
T Consensus 164 ~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~----~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 164 ELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDE----QDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCS----CHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhCC
Confidence 3566777777777 9999999999999998765421 22457899999999988 89999999999988874322
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
. ..+.. ..++.+..+++.. +..+|..|+.+|..++..-.... .. ...++.++.++.+.++.++..|+.+|..+
T Consensus 236 ~-~~~~~--~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 236 Q-EDLEA--LVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI--TK-TDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp H-HHHHH--HTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH--HH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H-HHHHH--HHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc--ch-hHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 1 11222 4788888888776 79999999999999876422211 12 46899999999988889999999999998
Q ss_pred cCCcch--hHHHHhcCchHHHHHHhcc
Q 048793 531 AGDRET--VGRLVERGIVEIVAEAMDV 555 (683)
Q Consensus 531 s~~~~n--~~~iv~aG~V~~Lv~lL~~ 555 (683)
+..-.. +....-..++|.+..++.+
T Consensus 309 ~~~~~~~~~~~~~~~~l~p~l~~~l~d 335 (588)
T 1b3u_A 309 CENLSADCRENVIMSQILPCIKELVSD 335 (588)
T ss_dssp HHTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred HHHhChhhhhhHHHHHHHHHHHHHhcC
Confidence 764321 1112223455666666654
No 94
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.61 E-value=1.7e-07 Score=108.90 Aligned_cols=190 Identities=8% Similarity=0.097 Sum_probs=139.8
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHH-HhhCCCCCCCChhhHHHHHHHHHhcccC--
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLA-RHLGPDTASRLPNLQVNAVTTILNLSIL-- 448 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv-~lL~s~~~~~d~~~qe~A~~aL~nLs~~-- 448 (683)
.|..+++.|+++ +++.|..|+++|.+++. ++.+|..+...|+|+.++ .+|.+. +.++++.|+++|.||+.+
T Consensus 35 ~i~Pll~~L~S~-~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~----~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLKDLKSP-DAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDN----NIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHHHHSSS-CCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCS----CHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHcCCC-CHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCC----CHHHHHHHHHHHHHHHhhcC
Confidence 455677889998 99999999999999997 567899999998887765 578877 999999999999999975
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCC-------------C-------HHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGA-------------T-------WEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKG 507 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~-------------~-------~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~ 507 (683)
.+.+..++.. |++++|..+|++.. . .....+++.+|++||...+ ....+.. .|+++.
T Consensus 109 ~d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~ 186 (684)
T 4gmo_A 109 ADFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILR 186 (684)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHH
T ss_pred chHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHH
Confidence 4667888887 99999999986310 0 1234578889999986544 4556666 799999
Q ss_pred HHHhhcCCC---hhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHH---HHHHhccCchhHHHHHHHHHH
Q 048793 508 LMDLVKGGP---TSSKRDALVAILNLAGDRE-TVGRLVERGIVEI---VAEAMDVLPEESVTILEAVVK 569 (683)
Q Consensus 508 Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~---Lv~lL~~~~~~~~~aL~~L~~ 569 (683)
|+..|.+.+ .++...|+.+|++|+.+.. ....+.+.|.... +..+..........+.++|.+
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~N 255 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHN 255 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 999985432 4688999999999998765 4455555554332 233223333334445555544
No 95
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.61 E-value=3.5e-07 Score=99.88 Aligned_cols=274 Identities=10% Similarity=0.048 Sum_probs=178.7
Q ss_pred hhHHHHHHHhccCC-CHHHHHHHHHHHHhhhccC-chhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 371 MTASFLINKLATSQ-SMEAANDAVYELRSLSKTD-SDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~-~~~~~~~A~~~L~~La~~~-~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
+.++.|+..+.++. ++..+..|+..|..++++. ...-... -..+++.++.+|.+.. .+..++..|+.++.++...
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 35677888887653 6788999999999998754 1110111 1247788888887650 1478999999999987532
Q ss_pred -chhH-HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch--hhHHhhhc-ccHHHHHHhhcCCChhHHHHH
Q 048793 449 -EANK-TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH--RKTLGRKT-RVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 449 -~~~k-~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~--~~~i~~~~-G~i~~Lv~lL~~~~~~~~~~A 523 (683)
.++- ...... -.++.+...+.+. +.+++..++.+|..+...... ...+ . +.++.++..+.+.++.++..|
T Consensus 205 ~~~~~~~~~~~~-~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~a 279 (462)
T 1ibr_B 205 TKANFDKESERH-FIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSDIDEVALQG 279 (462)
T ss_dssp THHHHTSHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHhhhhhHHHH-HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCchHHHHHH
Confidence 1110 011111 1355555555555 789999999999998864332 1222 3 678888888888888899999
Q ss_pred HHHHHHhcCCcc------------------hhHHHHh---cCchHHHHHHhccC--------chh---HHHHHHHHHHcC
Q 048793 524 LVAILNLAGDRE------------------TVGRLVE---RGIVEIVAEAMDVL--------PEE---SVTILEAVVKRG 571 (683)
Q Consensus 524 ~~aL~nLs~~~~------------------n~~~iv~---aG~V~~Lv~lL~~~--------~~~---~~~aL~~L~~l~ 571 (683)
+..+..++.... ....+++ ..++|.|++.|.+. ... +..++..|+...
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~ 359 (462)
T 1ibr_B 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence 999988876421 0111121 23567777777531 112 445555555543
Q ss_pred CcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793 572 GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI 651 (683)
Q Consensus 572 ~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~ 651 (683)
+. ... ...++.+...+.+.+.+.|+.|+.+|..++.+.........+ ..+++.|..++.+..+++|..|.+.|..
T Consensus 360 ~~-~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 360 ED-DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (462)
T ss_dssp TT-THH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred cH-HHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 31 111 123456666677788999999999999998754322111112 5789999999999999999999999999
Q ss_pred HHhhhc
Q 048793 652 LRRWAA 657 (683)
Q Consensus 652 l~~~~~ 657 (683)
+..+-.
T Consensus 435 ~~~~~~ 440 (462)
T 1ibr_B 435 ICELLP 440 (462)
T ss_dssp HHHHGG
T ss_pred HHHhcc
Confidence 998654
No 96
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.57 E-value=3.9e-07 Score=105.87 Aligned_cols=189 Identities=13% Similarity=0.063 Sum_probs=137.3
Q ss_pred cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhhcC--
Q 048793 415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIE-VLRSGATWEAKGNAAATIFSLSGV-- 491 (683)
Q Consensus 415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~-lL~~~~~~~~~~~Aa~~L~~Ls~~-- 491 (683)
.|.+++..|+++ ++..|..|+.+|.||+.+...+..+... |+|..++. +|... +.+++..|+++|.||+..
T Consensus 35 ~i~Pll~~L~S~----~~~~r~~A~~al~~l~~~~~~~~l~~~~-~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLKDLKSP----DAKSRTTAAGAIANIVQDAKCRKLLLRE-QVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHHHHSSS----CCSHHHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHcCCC----CHHHHHHHHHHHHHHHcCcHHHHHHHHc-CCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcC
Confidence 345577889998 9999999999999999988888888887 88877665 56555 799999999999999965
Q ss_pred cchhhHHhhhcccHHHHHHhhcCCC---------------------hhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHH
Q 048793 492 HAHRKTLGRKTRVVKGLMDLVKGGP---------------------TSSKRDALVAILNLAGDRE-TVGRLVERGIVEIV 549 (683)
Q Consensus 492 ~~~~~~i~~~~G~i~~Lv~lL~~~~---------------------~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~L 549 (683)
.+.+..+.. .|++++|..+|+... ......++.+|++||...+ ....+...|+++.|
T Consensus 109 ~d~~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l 187 (684)
T 4gmo_A 109 ADFCVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL 187 (684)
T ss_dssp HHHHHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred chHHHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence 467777887 899999999985311 1133567889999997544 56677889999999
Q ss_pred HHHhcc-C---chhHHHHHHHHHHcCC-cHHHHHHc---CchHHHHHH--HhcCChHHHHHHHHHHHHHHh
Q 048793 550 AEAMDV-L---PEESVTILEAVVKRGG-LTAIVAAY---NTIKKLCIL--LREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 550 v~lL~~-~---~~~~~~aL~~L~~l~~-~~e~~~~~---g~v~~Lv~l--L~~~s~~~ke~A~~aL~~L~~ 610 (683)
+..|.+ + .+....|+..|..++. +.+....+ +....+..+ +...+...+..++++|+++..
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhh
Confidence 999853 1 3456777777777654 44444332 322222222 334555567788999999853
No 97
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.55 E-value=1.6e-06 Score=98.97 Aligned_cols=262 Identities=10% Similarity=0.049 Sum_probs=175.1
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
..++.+.+.|.+. ++.+|..|+.++..+...+++ .+.+.|++|.|..+|.+. |+.++.+|+.+|.+++.+..
T Consensus 121 ~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~----d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 121 YLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS----NPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS----CHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC----ChhHHHHHHHHHHHHHhhCC
Confidence 4566788889888 999999999999999886654 333468899999999988 99999999999999987643
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
....+.-.++.+..|+..|... ++-.+.....+|..++..++. . . ...++.+..+|++.++.++..|++++.++
T Consensus 193 ~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~--~--~-~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 193 NSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDR--E--A-QSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHH--H--H-HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChH--H--H-HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2111111124577788888776 677888888888777644321 1 1 45788899999988899999999999998
Q ss_pred cCC----cchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcC------------------Cc-HHHHHH-------c
Q 048793 531 AGD----RETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRG------------------GL-TAIVAA-------Y 580 (683)
Q Consensus 531 s~~----~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~------------------~~-~e~~~~-------~ 580 (683)
... ++.... +-..++++|+.++.++++..-.++..|..+. .. ...+.. .
T Consensus 267 ~~~~~~~~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l 345 (591)
T 2vgl_B 267 LELLPKDSDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRL 345 (591)
T ss_dssp CCSCCBTTBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHT
T ss_pred hhccCCCHHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHH
Confidence 742 222222 2345567777777644444333444333211 00 111100 0
Q ss_pred ---CchHHHH----HHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793 581 ---NTIKKLC----ILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR 653 (683)
Q Consensus 581 ---g~v~~Lv----~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
..+..++ ..+...+...+..+++++..+|...+. .. ...++.|+.++......++..+...++.+-
T Consensus 346 ~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 346 ASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-SA------ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp CCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-HH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-HH------HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 1233333 344467888999999999998875432 11 245778888888888777777766665553
Q ss_pred h
Q 048793 654 R 654 (683)
Q Consensus 654 ~ 654 (683)
+
T Consensus 419 ~ 419 (591)
T 2vgl_B 419 R 419 (591)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.54 E-value=5.6e-08 Score=77.67 Aligned_cols=48 Identities=27% Similarity=0.455 Sum_probs=42.4
Q ss_pred CcccccccccCCCCc-eecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 275 ADFRCPISLELMRNP-VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 275 ~~f~CPis~~~m~dP-v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
.+..||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999997 67899999999999999986 5799999988753
No 99
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.54 E-value=5.7e-08 Score=74.08 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=41.8
Q ss_pred CcccccccccCCCC----ceecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 275 ADFRCPISLELMRN----PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 275 ~~f~CPis~~~m~d----Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
+++.||||++.+.+ +++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999977 7888999999999999999874 89999998764
No 100
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.50 E-value=2.8e-08 Score=90.39 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=48.7
Q ss_pred CCcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793 274 PADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN 329 (683)
Q Consensus 274 p~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn 329 (683)
++++.||||++.|.+| ++++|||+|++.||.+|+.. ..+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5789999999999999 99999999999999999986 5699999999887666554
No 101
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.3e-08 Score=80.50 Aligned_cols=52 Identities=15% Similarity=0.471 Sum_probs=46.0
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN 325 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~ 325 (683)
.+.+++.||||++.+.+ ++++|||+|++.||.+|+. +..+||.|++++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 9999999999999999998 4789999998876543
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=3.9e-08 Score=75.55 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
.+++.||||++.+.+|++++|||+|++.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 367899999999999999999999999999884 5689999988653
No 103
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.2e-07 Score=77.16 Aligned_cols=51 Identities=16% Similarity=0.413 Sum_probs=44.6
Q ss_pred CCCCcccccccccCCCCceec---CCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 272 NVPADFRCPISLELMRNPVVV---ATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~---~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
+..++..||||++.+.+|..+ +|||+|++.||.+|+.. +.+||.|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 566788999999999988766 99999999999999987 4599999998754
No 104
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.45 E-value=2e-06 Score=98.26 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=179.6
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK 452 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k 452 (683)
...+++++.+. +.+.++-+.-.+..+++.+++.. .-++..|.+-|.++ ++.++..|+.+|.++.. ++
T Consensus 51 ~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~----n~~ir~~AL~~L~~i~~-~~-- 117 (591)
T 2vgl_B 51 FPDVVNCMQTD-NLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDP----NPLIRALAVRTMGCIRV-DK-- 117 (591)
T ss_dssp HHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSS----SHHHHHHHHHHHHTCCS-GG--
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCC----CHHHHHHHHHHHHcCCh-HH--
Confidence 34567778887 89999888888888877554321 23567778888888 99999999999999862 22
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
+.. ..++.+...|.+. ++.+|..|+.+|..+...... .+.. .++++.|..+|.+.++.++..|+.+|..++.
T Consensus 118 --~~~--~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~--~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 118 --ITE--YLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ--MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp --GHH--HHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC--CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred --HHH--HHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh--hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 222 3567788888877 799999999999999874332 2222 5889999999999899999999999999988
Q ss_pred Ccchh-HHHHhcCchHHHHHHhccCc-hhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 533 DRETV-GRLVERGIVEIVAEAMDVLP-EESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 533 ~~~n~-~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
..... ..-...+.+..|+..+.+.. -.....+..|..++..... .....++.+..++++.++.++..|++++..+..
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~-~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR-EAQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH-HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 65422 11122345667777776433 3356677777776643211 111235556566777888999999999888864
Q ss_pred cC--CchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 611 KG--GSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 611 ~~--~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
.- ..+....++ ..+.+.|+.|+. +++.+|.-|...|..+...
T Consensus 269 ~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 269 LLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp SCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 21 112233222 345677777664 7889999988888877664
No 105
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.44 E-value=1.3e-07 Score=72.12 Aligned_cols=48 Identities=21% Similarity=0.616 Sum_probs=42.0
Q ss_pred CCCcccccccccCCCC---ceecC-CccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 273 VPADFRCPISLELMRN---PVVVA-TGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 273 ~p~~f~CPis~~~m~d---Pv~~~-~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
+.++..||||++.+.+ ++.++ |||.|++.||.+|+.. +.+||.|++++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 3467889999999988 78886 9999999999999976 67999999875
No 106
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.40 E-value=2.3e-07 Score=74.34 Aligned_cols=51 Identities=12% Similarity=0.408 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCC---CceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 272 NVPADFRCPISLELMR---NPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~---dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
...++..||||++.+. +++.++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3456788999999884 5678899999999999999987 4579999988754
No 107
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.40 E-value=1.5e-07 Score=80.05 Aligned_cols=51 Identities=18% Similarity=0.464 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCCC---ceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 272 NVPADFRCPISLELMRN---PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~d---Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
...++..||||++.+.+ ++.++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34577899999999988 888899999999999999985 6699999988754
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=1.5e-07 Score=76.89 Aligned_cols=50 Identities=12% Similarity=0.385 Sum_probs=43.7
Q ss_pred CCcccccccccCCCCc---eecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793 274 PADFRCPISLELMRNP---VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT 324 (683)
Q Consensus 274 p~~f~CPis~~~m~dP---v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~ 324 (683)
.++..||||++.+.++ +.++|||.|++.||.+|+.. +.+||.|++++...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 4677899999999988 77899999999999999986 56999999887643
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.39 E-value=2.1e-07 Score=82.42 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=42.9
Q ss_pred CCCcccccccccCCCCce------------------ecCCccccchhhHHHHHhc----CCCCCCCCCCccCC
Q 048793 273 VPADFRCPISLELMRNPV------------------VVATGQTYDRQSISLWIES----GHNTCPKTGQTLAH 323 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv------------------~~~~g~ty~r~~I~~w~~~----g~~~cP~~~~~l~~ 323 (683)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ++.+||.|+..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 345679999999998886 7899999999999999963 35689999988753
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.34 E-value=1.8e-07 Score=99.39 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=45.1
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT 324 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~ 324 (683)
.+..||||++.+.+||+++|||+||+.||..|+..+..+||.|++++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34799999999999999999999999999999986678999999987654
No 111
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.30 E-value=1.5e-07 Score=76.69 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=40.4
Q ss_pred CcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 275 ADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
+++.||||++.+.|||+++|||+ ||+.||.+| ..||.|++++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 66789999999999999999999 999999999 689999988653
No 112
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.22 E-value=2.4e-05 Score=92.52 Aligned_cols=266 Identities=11% Similarity=0.101 Sum_probs=172.2
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
.++.+...+.+. +...+..|+..|..++.... ..-.... ..++|.|+..+.+. ++.++..++++|.+++..-.
T Consensus 370 l~~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 370 VLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ----SLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS----CHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC----cHHHHHHHHHHHHHHHHHhh
Confidence 445666667777 89999999999999986542 1111111 25789999999888 89999999999999875311
Q ss_pred hH---HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc------hhhHHhhhcccHHHHHHhhcCCC--hhH
Q 048793 451 NK---TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA------HRKTLGRKTRVVKGLMDLVKGGP--TSS 519 (683)
Q Consensus 451 ~k---~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~------~~~~i~~~~G~i~~Lv~lL~~~~--~~~ 519 (683)
.. .... +..++.++..|++. +.++..|+++|.+++..-. ....+ ...++.|+.++.+.+ +.+
T Consensus 444 ~~~~~~~~~--~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~v 516 (861)
T 2bpt_A 444 ESIDPQQHL--PGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNA 516 (861)
T ss_dssp GGSCTTTTH--HHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGH
T ss_pred hhcCCHHHH--HHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHH
Confidence 10 1111 14678888888653 8899999999998876421 11222 357888999987543 678
Q ss_pred HHHHHHHHHHhcCCcch-hHHHHhcCchHHHHHHhccC----------------chhHHHHHHHHHHc---CCcHHHHHH
Q 048793 520 KRDALVAILNLAGDRET-VGRLVERGIVEIVAEAMDVL----------------PEESVTILEAVVKR---GGLTAIVAA 579 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~----------------~~~~~~aL~~L~~l---~~~~e~~~~ 579 (683)
+..++.+|..+...... ....+ ...++.+++.|... .+....++..|..+ .+. .....
T Consensus 517 r~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~ 594 (861)
T 2bpt_A 517 RASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPV 594 (861)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGG
T ss_pred HHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHH
Confidence 88999999998765432 22222 24667777766421 11123344444332 221 00000
Q ss_pred -cCchHHHHHHHhcCCh-HHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 580 -YNTIKKLCILLREGSD-TSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 580 -~g~v~~Lv~lL~~~s~-~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
...++.+..++...+. ..++.+..++..++...+... ...+ ..+++.|...+.+.++.++..|..++..+.+.
T Consensus 595 ~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~-~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 595 ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF-EKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG-HHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH-HHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 0224556666776666 889999999988887544332 2223 24788888888888888999999988877663
No 113
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.18 E-value=2.1e-05 Score=90.15 Aligned_cols=144 Identities=12% Similarity=0.080 Sum_probs=106.3
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
..+..|.+.|.++ ++..+..|++.|.++... .+. ...+|.+..+|.+. ++.++..|+.++.++.....
T Consensus 107 l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~~------~~~-~~l~~~l~~~L~~~----~~~VRk~A~~al~~l~~~~p 174 (618)
T 1w63_A 107 LMTNCIKNDLNHS-TQFVQGLALCTLGCMGSS------EMC-RDLAGEVEKLLKTS----NSYLRKKAALCAVHVIRKVP 174 (618)
T ss_dssp HHHHHHHHHHSCS-SSHHHHHHHHHHHHHCCH------HHH-HHHHHHHHHHHHSC----CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHhcCCC-CHhHHHHHHHHHHhcCCH------HHH-HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHCh
Confidence 4577888999988 999999999999998632 122 35788999999998 99999999999999975322
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC---------------C
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG---------------G 515 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~---------------~ 515 (683)
.++. +.++.+..+|... ++.++.+|+.+|..++..+....... ...++.|+.+|.+ .
T Consensus 175 ---~~v~--~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 175 ---ELME--MFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp ---GGGG--GGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred ---HHHH--HHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 1222 5777788888776 79999999999999987643211111 3578888887753 2
Q ss_pred ChhHHHHHHHHHHHhcCCc
Q 048793 516 PTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 516 ~~~~~~~A~~aL~nLs~~~ 534 (683)
++-.+...+.+|..++..+
T Consensus 247 ~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRND 265 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhCCCC
Confidence 4556667778888877653
No 114
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.16 E-value=3.4e-07 Score=83.11 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=49.6
Q ss_pred CCCcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793 273 VPADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN 329 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn 329 (683)
-++.+.||||++.+.+| +.++|||+|+..||.+|+.. +.+||.|+.++...++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 35678999999999998 88999999999999999986 5699999999988777765
No 115
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.14 E-value=0.00011 Score=84.07 Aligned_cols=252 Identities=8% Similarity=0.018 Sum_probs=167.0
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
+..++.+.+.|.+. ++.+|..|+.++..+...+++.. .+.++.|..+|.+. |+.++..|+.+|..++.++
T Consensus 141 ~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~----d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 141 RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEK----NHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCC----CHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCC----CHhHHHHHHHHHHHHHHhC
Confidence 34567788889888 99999999999999998776432 26788888889888 9999999999999998764
Q ss_pred hhHHHHhcccCcHHHHHHHHhc--------------CCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-
Q 048793 450 ANKTRIMETEGALNGVIEVLRS--------------GATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG- 514 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~--------------~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~- 514 (683)
........ ..++.++.+|.+ ..++-.+.....+|..++..+... . ...++.|..++..
T Consensus 211 ~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~---~--~~~~~~L~~l~~~~ 283 (618)
T 1w63_A 211 PDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS---S--EAMNDILAQVATNT 283 (618)
T ss_dssp HHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHHHTS
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH---H--HHHHHHHHHHHhcc
Confidence 32211222 578888888864 125777888888888888654321 1 2344555555431
Q ss_pred -----CChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHHHcCCc-HHHHHHcCchHHHH
Q 048793 515 -----GPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDV-LPEESVTILEAVVKRGGL-TAIVAAYNTIKKLC 587 (683)
Q Consensus 515 -----~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~~l~~~-~e~~~~~g~v~~Lv 587 (683)
.+..+...|+.++.++...+. +. ..++..|..+|.+ +++...-|+..|..++.. +..+. .....++
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~--~~~~~i~ 356 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ--RHRSTIV 356 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG--GGHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH--HHHHHHH
Confidence 223566788888888754321 11 2456778887764 345555566666554432 22211 2345666
Q ss_pred HHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 588 ILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 588 ~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
..+...+..+|..|..+|..++...+ +.. +++.|...+.+.+...|+.+...+..+..
T Consensus 357 ~~l~d~d~~Ir~~alelL~~l~~~~n---v~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 357 DCLKDLDVSIKRRAMELSFALVNGNN---IRG------MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHCCSSS---THH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHccCCChhHHHHHHHHHHHHccccc---HHH------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66777788888888888888887432 122 23556666666777888777777777655
No 116
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.13 E-value=7.4e-05 Score=88.43 Aligned_cols=272 Identities=10% Similarity=0.061 Sum_probs=174.4
Q ss_pred hHHHHHHHhccCC-CHHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 372 TASFLINKLATSQ-SMEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 372 ~i~~Lv~~L~s~~-~~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
.++.|+..+.++. ++..+..++..|..++.... ...+.. ...++.+...+.++. .+..++..|+.+|.++...
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTC--SCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4567778887653 67889999999999887532 111221 356777777777640 1478999999999987643
Q ss_pred -chh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch--hhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793 449 -EAN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH--RKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524 (683)
Q Consensus 449 -~~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~--~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
..+ ....... ..++.+...+... +.+.+..++.+|..+...... ...+. ...++.++..+.+.++.++..|+
T Consensus 205 ~~~~~~~~~~~~-~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~al 280 (876)
T 1qgr_A 205 TKANFDKESERH-FIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGI 280 (876)
T ss_dssp CHHHHTSHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHhHHHHH-HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCCchHHHHHHH
Confidence 111 1111111 2566666666665 689999999999988764322 22221 26788888888877788899999
Q ss_pred HHHHHhcCCcc-------------------hhHHH--HhcCchHHHHHHhccC--------chh---HHHHHHHHHHcCC
Q 048793 525 VAILNLAGDRE-------------------TVGRL--VERGIVEIVAEAMDVL--------PEE---SVTILEAVVKRGG 572 (683)
Q Consensus 525 ~aL~nLs~~~~-------------------n~~~i--v~aG~V~~Lv~lL~~~--------~~~---~~~aL~~L~~l~~ 572 (683)
..+.+++.... ....+ .-...++.+++.|... ... +..++..|+...+
T Consensus 281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~ 360 (876)
T 1qgr_A 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc
Confidence 99988875421 00001 0124567777777521 112 3444555544322
Q ss_pred cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793 573 LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652 (683)
Q Consensus 573 ~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l 652 (683)
. ... ...++.+...+.+.+++.|+.|+.+|..++...+.+.....+ .++++.|+..+.+.++.+|..|.+.|..+
T Consensus 361 ~-~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 361 D-DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (876)
T ss_dssp G-GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H-hhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1 111 022445555566778999999999999998765422233333 35789999999999999999999999999
Q ss_pred Hhhh
Q 048793 653 RRWA 656 (683)
Q Consensus 653 ~~~~ 656 (683)
.++.
T Consensus 436 ~~~~ 439 (876)
T 1qgr_A 436 CELL 439 (876)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8864
No 117
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=9.5e-07 Score=72.05 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=39.4
Q ss_pred CCcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 274 PADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
.+++.||||++.+.+||+++|||+ ||+.|+.+ ...||.|++++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 356789999999999999999999 99999964 3689999998754
No 118
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.08 E-value=7.7e-07 Score=75.98 Aligned_cols=66 Identities=11% Similarity=0.246 Sum_probs=47.6
Q ss_pred CcccccccccCCCCceec---CCccccchhhHHHHHh----cCC---CCCCC--CCCc--cCCCCCcchHHHHHHHHHHH
Q 048793 275 ADFRCPISLELMRNPVVV---ATGQTYDRQSISLWIE----SGH---NTCPK--TGQT--LAHTNLVTNTALKNLIALWC 340 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~---~~g~ty~r~~I~~w~~----~g~---~~cP~--~~~~--l~~~~l~pn~~l~~~i~~~~ 340 (683)
+.|.||||++.+.+|+++ +|||+||+.||++|+. +|. ..||. |+.. +....+. +....++.+.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence 578999999999999876 7999999999999986 342 37999 9877 5443321 222244555554
Q ss_pred H
Q 048793 341 R 341 (683)
Q Consensus 341 ~ 341 (683)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 119
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.00 E-value=5.4e-05 Score=89.61 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=167.1
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
.++.+...|.+. ++..+..|+..|..++.... +.-... -.+++|.|+..|.+. ++.++..|+++|.+++..-.
T Consensus 367 ~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~----~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 367 VLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP----SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhCc
Confidence 455666777777 89999999999999987653 211121 245899999999988 89999999999999985422
Q ss_pred hH---HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch------------hhHHh-hhcccHHHHHHhhcC
Q 048793 451 NK---TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH------------RKTLG-RKTRVVKGLMDLVKG 514 (683)
Q Consensus 451 ~k---~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~------------~~~i~-~~~G~i~~Lv~lL~~ 514 (683)
.. .... +..++.++..|.+ +..++..|+++|.+++..-.. ...+. .....++.|+.++..
T Consensus 441 ~~~~~~~~l--~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~ 516 (876)
T 1qgr_A 441 EAAINDVYL--APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR 516 (876)
T ss_dssp GGTSSTTTH--HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS
T ss_pred hhcccHHHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhC
Confidence 11 1111 1467778888765 378899999999999864220 00010 113578888888875
Q ss_pred C---ChhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhcc----------Cch------hHHHHHHHHHHcCCc-
Q 048793 515 G---PTSSKRDALVAILNLAGDRE-TVGRLVERGIVEIVAEAMDV----------LPE------ESVTILEAVVKRGGL- 573 (683)
Q Consensus 515 ~---~~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~----------~~~------~~~~aL~~L~~l~~~- 573 (683)
. +...+..+..+|..|..... .... .-...++.+++.+.. ..+ ....++..|..++..
T Consensus 517 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~ 595 (876)
T 1qgr_A 517 PDGHQNNLRSSAYESLMEIVKNSAKDCYP-AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV 595 (876)
T ss_dssp CSSCSTTHHHHHHHHHHHHHHTCCSTTHH-HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCcchhhHHHHHHHHHHHHHHHCchhhHH-HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 23566778888888766433 2222 223455666655542 111 123344444433211
Q ss_pred H-HHHHHc--CchHHHHHHHhcCC--hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHH
Q 048793 574 T-AIVAAY--NTIKKLCILLREGS--DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAA 647 (683)
Q Consensus 574 ~-e~~~~~--g~v~~Lv~lL~~~s--~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~ 647 (683)
. +..... ..++.++.++...+ ...++.+..++..++...+.. ....+ ..+++.|...+.+. ++.++..|.+
T Consensus 596 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~ 672 (876)
T 1qgr_A 596 QHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE-FLKYM--EAFKPFLGIGLKNYAEYQVCLAAVG 672 (876)
T ss_dssp CHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG-GGGGH--HHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred ChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh-HHHHH--HHHHHHHHHHHcCcchHHHHHHHHH
Confidence 1 122111 22455666665543 468899999999988754332 12222 23678888888886 8899999998
Q ss_pred HHHHHHhh
Q 048793 648 LLRILRRW 655 (683)
Q Consensus 648 lL~~l~~~ 655 (683)
++..+.+.
T Consensus 673 ~l~~l~~~ 680 (876)
T 1qgr_A 673 LVGDLCRA 680 (876)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 120
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=4.1e-06 Score=69.34 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=39.6
Q ss_pred CcccccccccCCCC--------------ceec-CCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 275 ADFRCPISLELMRN--------------PVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 275 ~~f~CPis~~~m~d--------------Pv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
++-.|+||++.|.+ ++.+ +|||.|.+.||.+|+.. +.+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45669999999987 4444 59999999999999986 5699999988753
No 121
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.97 E-value=4.5e-06 Score=65.79 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=42.5
Q ss_pred CCcccccccccCCCCceec--CCccc-cchhhHHHHHhcCCCCCCCCCCccC
Q 048793 274 PADFRCPISLELMRNPVVV--ATGQT-YDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~--~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
+++..|+||++-.+|++++ ||||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3567899999999999988 99999 899999999975 568999999864
No 122
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.96 E-value=0.00015 Score=85.49 Aligned_cols=276 Identities=7% Similarity=0.019 Sum_probs=172.4
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchh-H--HHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDS-R--ACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r--~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
.++.|+..+.++.++..+..|+..+..+++.-... + ... ....++.++..|.+. ..+..++..|+.+|.++...
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~--~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQST--ETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHH
Confidence 56778888876436888999999999888753211 1 000 124567777777654 01578999999999886421
Q ss_pred -chh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch--hhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793 449 -EAN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH--RKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524 (683)
Q Consensus 449 -~~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~--~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
..+ ....... ..++.|...+.++ +.+.|..++.+|..++..... ...+. ...++.+...+.+.++.++..|+
T Consensus 212 ~~~~~~~~~~~~-~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~ 287 (861)
T 2bpt_A 212 IKNNMEREGERN-YLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTV 287 (861)
T ss_dssp CHHHHTSHHHHH-HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHccChhHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHH
Confidence 111 0000111 3566667777666 799999999999988764321 12221 15677777888888888999999
Q ss_pred HHHHHhcCCcchh--------------HHHH---hcCchHHHHHHhccC--------chhHHHHHHHHHHcCCcHHHHHH
Q 048793 525 VAILNLAGDRETV--------------GRLV---ERGIVEIVAEAMDVL--------PEESVTILEAVVKRGGLTAIVAA 579 (683)
Q Consensus 525 ~aL~nLs~~~~n~--------------~~iv---~aG~V~~Lv~lL~~~--------~~~~~~aL~~L~~l~~~~e~~~~ 579 (683)
.++..++...... ..+. -..+++.|+..|.+. ......+...|..++........
T Consensus 288 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~ 367 (861)
T 2bpt_A 288 EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH
Confidence 9999887643110 0011 145678888888631 12233344444333211100000
Q ss_pred cCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 580 YNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 580 ~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
...++.+...+.+.+.+.|+.|+.+|..++...+.......+ ..+++.|...+.+.++.+|..|.++|..+..+.
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 012344445556778899999999999998754423333333 257888888899999999999999998888764
No 123
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.96 E-value=3.5e-05 Score=95.36 Aligned_cols=268 Identities=12% Similarity=0.083 Sum_probs=176.4
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 451 (683)
.+..|+..+.+. |.+.|..|...|.+..+.....-..-.....++.|+..|.+. +..+|..|+.+|.+++..-..
T Consensus 7 ~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~----~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 7 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK----NGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhCCH
Confidence 466788888888 999999999999876654311000011235678899999887 999999999999998754222
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-------hHHhhhcccHHHHHHhhc-CCChhHHHHH
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-------KTLGRKTRVVKGLMDLVK-GGPTSSKRDA 523 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-------~~i~~~~G~i~~Lv~lL~-~~~~~~~~~A 523 (683)
.... ..++.|+..|.+. +..+|..|+.+|..++..-... ... . ...+|.|+..+. +++...+..|
T Consensus 82 --~~~~--~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~-~~llp~L~~~l~~~~~~~~~~~a 154 (1230)
T 1u6g_C 82 --YQVE--TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANV-C-KKITGRLTSAIAKQEDVSVQLEA 154 (1230)
T ss_dssp --HHHH--HHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHH-H-HHHHHHHHHHHSCCSCHHHHHHH
T ss_pred --HHHH--HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHH-H-HHHHHHHHHHHcCCCchHHHHHH
Confidence 1112 3567777777776 5788999999998887532211 111 1 468999999998 4678899999
Q ss_pred HHHHHHhcCCcch-hHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCC-hHHHHH
Q 048793 524 LVAILNLAGDRET-VGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGS-DTSRES 600 (683)
Q Consensus 524 ~~aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s-~~~ke~ 600 (683)
+.+|..++..... ... .-...++.|+..|.+. ......|+..|..++.......-...++.++..|.... ...+..
T Consensus 155 l~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~ 233 (1230)
T 1u6g_C 155 LDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRT 233 (1230)
T ss_dssp HHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred HHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHH
Confidence 9999998853211 100 1123455666666543 34466666666665532211111123677777776543 456777
Q ss_pred HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
|+.+|..++...+.. .... -..+++.+...+.+.++.+|+.|...+..+.+.
T Consensus 234 a~~~l~~l~~~~~~~-~~~~--l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 234 YIQCIAAISRQAGHR-IGEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHHSSGG-GTTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHHH-HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 888888888765542 1111 246889999999888999999999888887764
No 124
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.94 E-value=4.7e-06 Score=65.42 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=41.7
Q ss_pred CcccccccccCCCCceec--CCccc-cchhhHHHHHhcCCCCCCCCCCccC
Q 048793 275 ADFRCPISLELMRNPVVV--ATGQT-YDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~--~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
.+..|+||++-.+|++++ ||||. ||..|+.+|+.. +..||.|++++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 345799999999999988 99998 999999999976 478999999864
No 125
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.91 E-value=0.00014 Score=79.02 Aligned_cols=262 Identities=13% Similarity=0.070 Sum_probs=167.9
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch-hH-
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA-NK- 452 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~k- 452 (683)
.++..+.++ +.+.|..|-..|..+...+ ..|.++.|+.+|.+. ..+..++..|+..|.|+..... ..
T Consensus 5 ~~L~~~~s~-d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~--~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 5 TILEKTVSP-DRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHTTCS-CHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhccccchHHH
Confidence 345555667 8899999999888765421 236777888888764 1157899999999999853210 00
Q ss_pred H------HHhc---ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC--ChhHHH
Q 048793 453 T------RIME---TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG--PTSSKR 521 (683)
Q Consensus 453 ~------~I~~---~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~--~~~~~~ 521 (683)
. ..+. .+..-..|+..|.+. +..+ ..++.+|..++..+... ..-.+.++.|+..+.++ ++..+.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhccCCCCHHHHH
Confidence 0 0000 002334466777766 4556 77888888887654221 11257899999999988 788999
Q ss_pred HHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC---chhHHHHHHHHHHcCCc-HHHHHH---cC-chHHHHHHHhc
Q 048793 522 DALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL---PEESVTILEAVVKRGGL-TAIVAA---YN-TIKKLCILLRE 592 (683)
Q Consensus 522 ~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~---~~~~~~aL~~L~~l~~~-~e~~~~---~g-~v~~Lv~lL~~ 592 (683)
.|+.+|..++..- .....-.-..+++.++..|.+. ......|+..+..+... .+.... .. .++.+...+..
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999998632 1111111124677888888754 33456666666653321 111100 01 14445455566
Q ss_pred CChHHHHHHHHHHHHHHhcCCchHHHHHHhcC-CcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 593 GSDTSRESAAATLVTICRKGGSEMVADIAAVP-GIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 593 ~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~-G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
.++..+..++.+|..++...+.. ....+ . ++++.+...+.+.++.++..|...+..+.+.
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~-~~~~~--~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQY-METYM--GPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGG-CTTTT--TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 78899999999999998765432 11212 2 6788888888888999999999988888764
No 126
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.89 E-value=3.4e-06 Score=76.24 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=91.9
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
..++.|+..|.+. ++..|..|++.|..+.. ..++.|+.+|.+. ++.++..|+.+|.++..
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~----~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRMGD------------EAFEPLLESLSNE----DWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS----CHHHHHHHHHHHGGGCS---
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC----CHHHHHHHHHHHHhcCC---
Confidence 3456788889888 88888888887765521 1369999999988 99999999999988752
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
. .+++.|+..|++. ++.+|..|+++|..+. . .++++.|+.+|++.++.++..|+.+|.+|
T Consensus 72 -------~-~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -------E-RAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -------H-HHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -------H-HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2 5689999999887 7999999999999874 2 46799999999988888999999988654
No 127
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.89 E-value=0.0009 Score=65.53 Aligned_cols=226 Identities=15% Similarity=0.141 Sum_probs=151.5
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
..+.+..|..+|... |+..+.+|+..|..+.+.-+. -+..+. ...+|.++.++.+. |..+.-.|+.+|..|-.
T Consensus 31 ~e~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~----dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 31 DKRALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQE----NEKVTIKALRALGYLVK 104 (265)
T ss_dssp CHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCST----THHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhcc----chhHHHHHHHHHHHHHc
Confidence 455788899999888 999999999999999998432 233333 35799999999999 99999999999988865
Q ss_pred Cc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 448 LE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 448 ~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
+. -....... .+..++.+++++ +.-.+..|+..|..|...... .+.+..|..++.+.+.+.+..|+++
T Consensus 105 ~vpL~~~~y~K---l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~ 173 (265)
T 3b2a_A 105 DVPMGSKTFLK---AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCL 173 (265)
T ss_dssp TCCBCHHHHHH---HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCCCCHHHHHH---HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 42 22333322 355688888888 688999999999999333222 3556678888888889999999999
Q ss_pred HHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHH
Q 048793 527 ILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLV 606 (683)
Q Consensus 527 L~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~ 606 (683)
|.|++...++..-+ .++ +..+-.+|++.++..++.|..+|.
T Consensus 174 L~eia~~S~D~~i~--~~I-------------------------------------~~eI~elL~~eD~~l~e~aLd~Le 214 (265)
T 3b2a_A 174 FLNMLNSSADSGHL--TLI-------------------------------------LDEIPSLLQNDNEFIVELALDVLE 214 (265)
T ss_dssp HHHHGGGCSSCCCG--GGT-------------------------------------TTTHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHhhcccCCHHHH--HHH-------------------------------------HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99998755432111 011 122334455555566666666666
Q ss_pred HHHhcCC-chHHHHHHhcCCcHHHHHHHh-hcCCHHHHHHHHHHHHHHH
Q 048793 607 TICRKGG-SEMVADIAAVPGIERVIWELM-ESGTARARRKAAALLRILR 653 (683)
Q Consensus 607 ~L~~~~~-~~~~~~~~~~~G~~~~L~~Ll-~~~~~~~k~kA~~lL~~l~ 653 (683)
.+.+..= ++..-.+ .++....-.|. ..|.|..+.||...-..+-
T Consensus 215 ~ils~pi~~~~~~~~---~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 215 KALSFPLLENVKIEL---LKISRIVDGLVYREGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp HHTTSCCCSCCHHHH---HHHHHHHHHGGGCSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCcccHhHHHHH---HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 5554311 1122222 13344444555 6678888888877665543
No 128
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.80 E-value=0.00022 Score=88.26 Aligned_cols=226 Identities=10% Similarity=0.074 Sum_probs=157.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
...++.|++.|.+. ++..|..|+.+|..++..... .. -...++.|+..|.++ +..++..|+.+|..++..-
T Consensus 47 ~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--~~--~~~i~~~Ll~~l~d~----~~~vR~~a~~~L~~i~~~l 117 (1230)
T 1u6g_C 47 RKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--YQ--VETIVDTLCTNMLSD----KEQLRDISSIGLKTVIGEL 117 (1230)
T ss_dssp HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH--HH--HHHHHHHHHHHTTCS----SSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH--HH--HHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhC
Confidence 34677788889877 999999999999999876543 11 134678888888887 8889999999998886431
Q ss_pred hh-------HHHHhcccCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHHHhhcCCChhH
Q 048793 450 AN-------KTRIMETEGALNGVIEVLRS-GATWEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLMDLVKGGPTSS 519 (683)
Q Consensus 450 ~~-------k~~I~~~~G~I~~Lv~lL~~-~~~~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv~lL~~~~~~~ 519 (683)
.. ...... ..++.|+..+.+ + +...+..|+.+|..++.... ....+ ...++.|+..|.+.++.+
T Consensus 118 ~~~~~~~~~~~~~~~--~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~---~~ll~~l~~~L~~~~~~v 191 (1230)
T 1u6g_C 118 PPASSGSALAANVCK--KITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFH---PSILTCLLPQLTSPRLAV 191 (1230)
T ss_dssp C-----CCTHHHHHH--HHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTH---HHHHHHHGGGGGCSSHHH
T ss_pred CCcccccchHHHHHH--HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHcCCcHHH
Confidence 11 112222 578889999984 5 68999999999999875211 11111 457888899998888889
Q ss_pred HHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc-----hhHHHHHHHHHHcCCcHHHHHH-cCchHHHHHHHhcC
Q 048793 520 KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP-----EESVTILEAVVKRGGLTAIVAA-YNTIKKLCILLREG 593 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~~~~e~~~~-~g~v~~Lv~lL~~~ 593 (683)
++.|+.+|..++...++.. -...++.|++.|.... ..+..+++.++...+.. .... ...++.+...+...
T Consensus 192 R~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR-IGEYLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp HHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG-GTTSCTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhcCC
Confidence 9999999999987644321 2246788888876321 22666777666544321 1111 13367777778778
Q ss_pred ChHHHHHHHHHHHHHHhcCCc
Q 048793 594 SDTSRESAAATLVTICRKGGS 614 (683)
Q Consensus 594 s~~~ke~A~~aL~~L~~~~~~ 614 (683)
++..|+.|..++..++...+.
T Consensus 268 ~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 268 DDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp CTTTHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHHHHChH
Confidence 889999999999999886554
No 129
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.79 E-value=0.0015 Score=74.74 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=82.4
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhh--CCCCCCCChhhHHHHHHHHHhcccC
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL--GPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL--~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
-.+..+.+.|.++ ++..+..|++.|.++.. ++ +.+ ..+|.+..+| .+. ++.++..|+.++.++...
T Consensus 111 L~iN~l~kDl~~~-n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~----~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 111 LINNAIKNDLASR-NPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDT----MDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp HHHHHHHHHHHSC-CHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSS----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHHh
Confidence 3466777888888 99999999999998853 21 332 4678889999 777 999999999999998753
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
.. . ++..++.++.+.++|... ++.++.+|+.+|..++..+
T Consensus 179 ~p--~-~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 179 SP--D-LVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp CG--G-GCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHC
T ss_pred Ch--h-hcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhC
Confidence 22 1 222237999999999766 7999999999999998654
No 130
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.78 E-value=5.2e-06 Score=87.62 Aligned_cols=46 Identities=11% Similarity=0.273 Sum_probs=41.4
Q ss_pred CCCcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 273 VPADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
+.+++.||||++.+.+||++||||+ ||+.|+..| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3467899999999999999999999 999999988 689999988653
No 131
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.75 E-value=5.5e-06 Score=68.21 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=39.2
Q ss_pred CcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 275 ADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
++..|+||++.+.|||++||||. ||+.|+..| ..||.|++++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 55679999999999999999999 999999877 389999998754
No 132
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.74 E-value=2e-05 Score=68.60 Aligned_cols=47 Identities=15% Similarity=0.350 Sum_probs=39.8
Q ss_pred CcccccccccCCCCc------------------eecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 275 ADFRCPISLELMRNP------------------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 275 ~~f~CPis~~~m~dP------------------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
++-.|+||++.|.++ +..+|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 345799999999887 34699999999999999986 789999998753
No 133
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.73 E-value=0.0017 Score=77.12 Aligned_cols=267 Identities=12% Similarity=0.103 Sum_probs=181.7
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
+.+..|.+.+... ... +.|+..+..++..... .-+.+ -.+.+|.++..+... +..++..|-.++..+...
T Consensus 54 ~~~~~~~~~~~~k-~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~dk----~~~v~~aa~~~~~~~~~~ 125 (986)
T 2iw3_A 54 HFFGELAKGIKDK-KTA--ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAGNK----DKEIQSVASETLISIVNA 125 (986)
T ss_dssp HHHHHHHHHHTSH-HHH--HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTTCS----SHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcc-CCH--HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHh
Confidence 3455566666543 122 7888888888855431 11111 126788888888887 788888887777666421
Q ss_pred -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
+.+. + . ..+|.|+..|.++.....+..|+.+|..|+..........- ...||.+-+.+-+..+++++.|..++
T Consensus 126 ~~~~a--~--~-~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~ 199 (986)
T 2iw3_A 126 VNPVA--I--K-ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETMWDTKKEVKAAATAAM 199 (986)
T ss_dssp SCGGG--H--H-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCHHH--H--H-HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhcccCcHHHHHHHHHHH
Confidence 2221 1 2 57899999998764699999999999999875432222222 56788888888777789999999999
Q ss_pred HHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHH--HcCchHHHHHHHhcCChHHHHHHHHHH
Q 048793 528 LNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVA--AYNTIKKLCILLREGSDTSRESAAATL 605 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~--~~g~v~~Lv~lL~~~s~~~ke~A~~aL 605 (683)
..+|..-+|+.. ..-||.||+.+.+ ++.+-+++..|.....-.+.-. -.--+|.|.+-|...+...++.++-+.
T Consensus 200 ~~~~~~~~n~d~---~~~~~~~~~~~~~-p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 200 TKATETVDNKDI---ERFIPSLIQCIAD-PTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII 275 (986)
T ss_dssp HHHGGGCCCTTT---GGGHHHHHHHHHC-TTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHhcCCCcch---hhhHHHHHHHhcC-hhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEE
Confidence 999986666532 3458899999984 5668888888876442211110 001256666666667888999999999
Q ss_pred HHHHhcCCchH-HHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHhhhc
Q 048793 606 VTICRKGGSEM-VADIAAVPGIERVIWELMES-GTARARRKAAALLRILRRWAA 657 (683)
Q Consensus 606 ~~L~~~~~~~~-~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL~~l~~~~~ 657 (683)
-|||+--.+.. +...+ ...+|-|...... ..|++|+.|...+..|.+...
T Consensus 276 ~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 99999766542 33332 5666666654433 589999999999999988644
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.67 E-value=0.00057 Score=70.84 Aligned_cols=152 Identities=12% Similarity=0.104 Sum_probs=120.3
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK 452 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k 452 (683)
+..+++.|.++ +.+.++.++..|..+-.++..--..+++.|++..|+.+.... +...|.+++++|.+|-.+.+.-
T Consensus 120 a~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~Gm 194 (339)
T 3dad_A 120 VNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVDGM 194 (339)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhccccc
Confidence 44577888887 899999999999984444555778888899999999999988 8999999999999999998888
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcc---------cHHHHHHhhc---CCChhH
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTR---------VVKGLMDLVK---GGPTSS 519 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G---------~i~~Lv~lL~---~~~~~~ 519 (683)
..|+.++..|..|+.++.+. +..+.+.|..+|..++...+ +...+..... -+..|+.+|. .++.+.
T Consensus 195 ~gvvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred cchhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 77886668999999999875 78999999999999987765 3333222111 2668999997 566777
Q ss_pred HHHHHHHHHHh
Q 048793 520 KRDALVAILNL 530 (683)
Q Consensus 520 ~~~A~~aL~nL 530 (683)
+.+|.+.|-.+
T Consensus 274 q~~amtLIN~l 284 (339)
T 3dad_A 274 LVYTVTLINKT 284 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666544
No 135
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.58 E-value=0.00034 Score=69.86 Aligned_cols=176 Identities=12% Similarity=0.116 Sum_probs=124.0
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhcccCch-hH
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSILEA-NK 452 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~~-~k 452 (683)
+.+.+.+. +...|..|+..|..+....+.. ...+ ...++.|..+|. +. +..++..|+.+|..|+..-. .-
T Consensus 20 l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~----~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 20 FYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDS----NVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHhhhH
Confidence 66778887 9999999999999998763211 0011 245777888884 77 89999999999999985321 11
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
...+. ..++.|+..+... +..+|..|..+|..+..... + ...++.|...|.+.++.++..++..|..+..
T Consensus 93 ~~~~~--~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 93 SNYAS--ACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS----L---EAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp HHHHH--HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHH--HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 12222 3788888888877 69999999999999976432 1 3478889999999999999999999999644
Q ss_pred Ccc-hh--HHHHhcCchHHHHHHhccC-chh---HHHHHHHHHH
Q 048793 533 DRE-TV--GRLVERGIVEIVAEAMDVL-PEE---SVTILEAVVK 569 (683)
Q Consensus 533 ~~~-n~--~~iv~aG~V~~Lv~lL~~~-~~~---~~~aL~~L~~ 569 (683)
... .. .... ...++.|+.+|.+. .+. +..+++.++.
T Consensus 163 ~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 163 RTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 322 11 1122 25788899999754 334 4444444444
No 136
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=6.9e-05 Score=59.66 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=40.0
Q ss_pred CCCcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 273 VPADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
-.++..|+||++-..|+|++||||. ||..|++. ...||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3467889999999999999999999 99999983 4789999988754
No 137
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.47 E-value=4.1e-05 Score=69.03 Aligned_cols=117 Identities=14% Similarity=0.213 Sum_probs=82.0
Q ss_pred hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
.+.++.|+.+|.++ ++.++..|+.+|.++.. ..++.|+..|++. ++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~----~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~-- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE----NKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD-- 71 (131)
T ss_dssp ----------CCSS----CCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--
T ss_pred cccHHHHHHHhcCC----CHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--
Confidence 46788899999988 88899888888876531 2368899999876 79999999999987642
Q ss_pred chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHH
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAV 567 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L 567 (683)
.++++.|+.+|.++++.++..|+++|.++.. ..+++.|+++|.+. ......|...|
T Consensus 72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3578999999998889999999999998752 34678888888753 33444555444
No 138
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00011 Score=60.38 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=42.2
Q ss_pred CCCcccccccccCC--CCceecCCc-----cccchhhHHHHHhc-CCCCCCCCCCccCC
Q 048793 273 VPADFRCPISLELM--RNPVVVATG-----QTYDRQSISLWIES-GHNTCPKTGQTLAH 323 (683)
Q Consensus 273 ~p~~f~CPis~~~m--~dPv~~~~g-----~ty~r~~I~~w~~~-g~~~cP~~~~~l~~ 323 (683)
..++-.|+||++-+ .+|++.||+ |.|-+.||++|+.. +..+||.|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999766 578888996 99999999999986 34799999998764
No 139
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.38 E-value=0.0023 Score=63.74 Aligned_cols=145 Identities=15% Similarity=0.079 Sum_probs=109.4
Q ss_pred hHHHHHHHhc-cCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793 372 TASFLINKLA-TSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA 450 (683)
Q Consensus 372 ~i~~Lv~~L~-s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 450 (683)
.++.|...|. .. +..++..|+.+|..++..-...-... -...+|.|+..+++. +..+++.|..+|.++.....
T Consensus 57 i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~-~~~ilp~ll~~l~d~----~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 57 LVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY-ASACVPSLLEKFKEK----KPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHcCC
Confidence 4566778884 67 89999999999999986432111111 134789999999988 89999999999999875432
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cch---hhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAH---RKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~---~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
. +..++.|...|++. ++.+|..++..|..+... ... ...+ ...+|.|+.+|.+.+.+++..|..+
T Consensus 131 ~-------~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l---~~l~p~l~~~l~D~~~~VR~~A~~~ 199 (242)
T 2qk2_A 131 L-------EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLL---KLLTTSLVKTLNEPDPTVRDSSAEA 199 (242)
T ss_dssp H-------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHH---HHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 1 13677788888887 799999999999996433 211 2222 4689999999999899999999999
Q ss_pred HHHhcCC
Q 048793 527 ILNLAGD 533 (683)
Q Consensus 527 L~nLs~~ 533 (683)
|..++..
T Consensus 200 l~~l~~~ 206 (242)
T 2qk2_A 200 LGTLIKL 206 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 140
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.35 E-value=0.0068 Score=69.29 Aligned_cols=248 Identities=13% Similarity=0.111 Sum_probs=163.4
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhcccCc
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
.++..|..+|.++ +++.|.-|+..|..++...+. ...+ ....+.++..|. +. |..++..|+.+|..++ ++
T Consensus 329 ~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~----d~~Ir~~aL~lL~~l~-~~ 399 (621)
T 2vgl_A 329 RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTER----DVSVRQRAVDLLYAMC-DR 399 (621)
T ss_dssp HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCC----CHHHHHHHHHHHHHHC-CH
T ss_pred HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCC----CHhHHHHHHHHHHHHc-Ch
Confidence 4567788888877 899999999999999876642 2223 345777888888 77 9999999999999997 34
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
+|-..| +..|...+... +.+.+..++..+..++..-. ....-.+..|++++..+...+...++..+..
T Consensus 400 ~Nv~~I------v~eL~~yl~~~-d~~~~~~~v~~I~~la~k~~-----~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ 467 (621)
T 2vgl_A 400 SNAQQI------VAEMLSYLETA-DYSIREEIVLKVAILAEKYA-----VDYTWYVDTILNLIRIAGDYVSEEVWYRVIQ 467 (621)
T ss_dssp HHHHHH------HHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHC-----SSTHHHHHHHHHHHHHHGGGSCSHHHHHHHH
T ss_pred hhHHHH------HHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 554444 44577788776 78999999999998874211 1113467788888876544455666667776
Q ss_pred hcCC-cchhHHHHhcCchHHHHHHhccCc---hhHHHHHHHHHHcCCcHHHHHHcC-c-----hHHHHHHHhcCChHHHH
Q 048793 530 LAGD-RETVGRLVERGIVEIVAEAMDVLP---EESVTILEAVVKRGGLTAIVAAYN-T-----IKKLCILLREGSDTSRE 599 (683)
Q Consensus 530 Ls~~-~~n~~~iv~aG~V~~Lv~lL~~~~---~~~~~aL~~L~~l~~~~e~~~~~g-~-----v~~Lv~lL~~~s~~~ke 599 (683)
+... ++-+.. ++..|++.+.+.. .....++++|...+. ...... . +..+.+.+...++.+|.
T Consensus 468 ii~~~~~~~~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~---~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~ 539 (621)
T 2vgl_A 468 IVINRDDVQGY-----AAKTVFEALQAPACHENLVKVGGYILGEFGN---LIAGDPRSSPLIQFNLLHSKFHLCSVPTRA 539 (621)
T ss_dssp HHGGGCSCHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTH---HHHSSTTSCHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHhCChhHHHH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHH---HhcccCCCCHHHHHHHHHHHhccCCHHHHH
Confidence 6543 333433 3556777776432 123344455554331 122111 1 22344444567899999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh--cCCHHHHHHHHHHHHHHHh
Q 048793 600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELME--SGTARARRKAAALLRILRR 654 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~--~~~~~~k~kA~~lL~~l~~ 654 (683)
.++.++..++...++ . ... +...|..... +.++++|.+|...+++++.
T Consensus 540 ~~Lta~~Kl~~~~p~-~-~~~-----i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 540 LLLSTYIKFVNLFPE-V-KAT-----IQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHHHHHHCGG-G-HHH-----HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHChH-H-HHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 999999888875543 1 111 1233333344 7799999999999999975
No 141
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.23 E-value=0.11 Score=56.32 Aligned_cols=217 Identities=14% Similarity=0.125 Sum_probs=141.8
Q ss_pred hhhHHHHHHHHHhcccCchhHHHHhcccC-cHHHHHHHHhc----------------CCCHHHHHHHHHHHHHhhcCcch
Q 048793 432 PNLQVNAVTTILNLSILEANKTRIMETEG-ALNGVIEVLRS----------------GATWEAKGNAAATIFSLSGVHAH 494 (683)
Q Consensus 432 ~~~qe~A~~aL~nLs~~~~~k~~I~~~~G-~I~~Lv~lL~~----------------~~~~~~~~~Aa~~L~~Ls~~~~~ 494 (683)
...+.-++.+|..|...++.|..+.+..| .++.++.+++. +.+.+..-.++-+++-|+..++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 34456678888888888899988876533 47777766541 11255678889999999999887
Q ss_pred hhHHhhhcccH--HHHHHhhcCCC-hhHHHHHHHHHHHhcCCc-----chhHHH-HhcCchHHHHHHhcc----CchhHH
Q 048793 495 RKTLGRKTRVV--KGLMDLVKGGP-TSSKRDALVAILNLAGDR-----ETVGRL-VERGIVEIVAEAMDV----LPEESV 561 (683)
Q Consensus 495 ~~~i~~~~G~i--~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~-----~n~~~i-v~aG~V~~Lv~lL~~----~~~~~~ 561 (683)
...+.. .+.+ +.|+.+++... ..+.+-++.+|.||.... .....+ +..++ ..+++.|.. +++. .
T Consensus 262 ~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl-~ 338 (480)
T 1ho8_A 262 ANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEEL-R 338 (480)
T ss_dssp HHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHH-H
T ss_pred HHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHH-H
Confidence 777766 5543 67888887654 568899999999998754 122323 33444 556666652 2222 2
Q ss_pred HHHHHH----H----HcCCcHHHHHH------------------------c-----CchHHHHHHHhc----------CC
Q 048793 562 TILEAV----V----KRGGLTAIVAA------------------------Y-----NTIKKLCILLRE----------GS 594 (683)
Q Consensus 562 ~aL~~L----~----~l~~~~e~~~~------------------------~-----g~v~~Lv~lL~~----------~s 594 (683)
+-+..| . .+++-.+-..+ . ..+..|+++|.. .+
T Consensus 339 edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d 418 (480)
T 1ho8_A 339 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 418 (480)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCC
Confidence 222222 1 12211111111 1 114567777863 24
Q ss_pred hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793 595 DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR 653 (683)
Q Consensus 595 ~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
+.+..-|+.=+..++++.+. .+.++.+.|+=..+..|+.+.++++|..|...++.+=
T Consensus 419 ~~~laVAc~Digefvr~~P~--gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 419 KIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred cceEEeecccHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55667777778888888775 3556777899999999999999999999988877653
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0091 Score=60.00 Aligned_cols=187 Identities=8% Similarity=0.069 Sum_probs=122.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hhcC-cchhhHHhhhcccHHHHHHhh-cCCChhHHHHHHHHHHHhcCCcchhHHHH
Q 048793 465 VIEVLRSGATWEAKGNAAATIFS-LSGV-HAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDALVAILNLAGDRETVGRLV 541 (683)
Q Consensus 465 Lv~lL~~~~~~~~~~~Aa~~L~~-Ls~~-~~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 541 (683)
+...+.+. ++..|..|...|.. +... .+.....+.....+..|...+ ++.+..++..|+.+|..|+..-.+ ..+-
T Consensus 21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~ 98 (249)
T 2qk1_A 21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFS 98 (249)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSC
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-cccc
Confidence 44556666 79999999999999 8642 221110112135678888888 677888999999999999853220 1121
Q ss_pred -h--cCchHHHHHHhccCc-hh---HHHHHHHHHHcCCcHHHHH--HcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcC
Q 048793 542 -E--RGIVEIVAEAMDVLP-EE---SVTILEAVVKRGGLTAIVA--AYNTIKKLCILLREGSDTSRESAAATLVTICRKG 612 (683)
Q Consensus 542 -~--aG~V~~Lv~lL~~~~-~~---~~~aL~~L~~l~~~~e~~~--~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~ 612 (683)
. .-++|.+++.+.+.. .+ +..|+..++..+. +.... -...++.|...|.+.++.+|+.++.+|..++...
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1 236888999988643 33 3344444443321 00000 0012456667778889999999999999998766
Q ss_pred Cc--hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 613 GS--EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 613 ~~--~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
+. ......+ ...+++.|..++.+.++.+|..|...+..+.+.
T Consensus 178 ~~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 178 KDGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 53 2222211 257899999999999999999999999888764
No 143
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.19 E-value=5.4e-05 Score=66.88 Aligned_cols=44 Identities=16% Similarity=0.437 Sum_probs=0.0
Q ss_pred ccccccccCCCCcee------------------cCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793 277 FRCPISLELMRNPVV------------------VATGQTYDRQSISLWIESGHNTCPKTGQTL 321 (683)
Q Consensus 277 f~CPis~~~m~dPv~------------------~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l 321 (683)
-.|+||++.|.+|.. .+|||.|.+.||.+|+.. +.+||.|++++
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 110 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCee
Confidence 479999999987532 489999999999999987 67999999874
No 144
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.12 E-value=0.02 Score=56.14 Aligned_cols=147 Identities=15% Similarity=0.088 Sum_probs=117.3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
+...+.+++.+++. |..+..+|+++|+.+-.+.+-....+.. ++..|..++.++ +.-.+++|+..|..+..-.
T Consensus 74 e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~----~~il~~eaae~Lgklkv~~ 146 (265)
T 3b2a_A 74 ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESP----DDMMRIETIDVLSKLQPLE 146 (265)
T ss_dssp HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSC----CHHHHHHHHHHHHHCCBSC
T ss_pred HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCC----CchHHHHHHHHhCcCCccc
Confidence 45678889999888 9999999999999999888766666654 356789999988 9999999999999984322
Q ss_pred hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
.. ++++..+..++.+. +.+.+..|.++|.+++...+....+ .+.+..+-.+|++.++..++.|+.+|..
T Consensus 147 ~~-------~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 147 DS-------KLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEK 215 (265)
T ss_dssp CC-------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred ch-------HHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22 24566788888655 8999999999999999866554444 3455567788888999999999999999
Q ss_pred hcCCc
Q 048793 530 LAGDR 534 (683)
Q Consensus 530 Ls~~~ 534 (683)
+...+
T Consensus 216 ils~p 220 (265)
T 3b2a_A 216 ALSFP 220 (265)
T ss_dssp HTTSC
T ss_pred HHcCc
Confidence 98764
No 145
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.94 E-value=0.046 Score=64.40 Aligned_cols=233 Identities=12% Similarity=0.030 Sum_probs=145.1
Q ss_pred hHHHHHHHhccCCC--------HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHH
Q 048793 372 TASFLINKLATSQS--------MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTIL 443 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~--------~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~ 443 (683)
++..|...|.+. + +.++..|+-.|......+. + ..+++.|..+|... +..+.+.|+.+|.
T Consensus 430 ~~~lL~~~L~~~-~~~~~~~~~~~ir~gAaLGLGla~~GS~--~-----eev~e~L~~~L~dd----~~~~~~~AalALG 497 (963)
T 4ady_A 430 TTDYLKNIIVEN-SGTSGDEDVDVLLHGASLGIGLAAMGSA--N-----IEVYEALKEVLYND----SATSGEAAALGMG 497 (963)
T ss_dssp HHHHHHHHHHHH-SSCCSCHHHHHHHHHHHHHHHHHSTTCC--C-----HHHHHHHHHHHHTC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-cccccccccHHHHHHHHHHHHHHhcCCC--C-----HHHHHHHHHHHhcC----CHHHHHHHHHHHh
Confidence 355566666554 3 4566667667766543332 1 13567788888776 6666666766766
Q ss_pred hcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-CChhHHHH
Q 048793 444 NLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-GPTSSKRD 522 (683)
Q Consensus 444 nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-~~~~~~~~ 522 (683)
.+-.+..|. .++..|+..+.+..+...++.++-.|..+... . ...++.+++.|.. .++-++..
T Consensus 498 li~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~-~e~~~~li~~L~~~~dp~vRyg 561 (963)
T 4ady_A 498 LCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYG--------R-QELADDLITKMLASDESLLRYG 561 (963)
T ss_dssp HHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------C-GGGGHHHHHHHHHCSCHHHHHH
T ss_pred hhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------C-hHHHHHHHHHHHhCCCHHHHHH
Confidence 553333222 24566777665544678888888888776543 3 5678888888865 45567677
Q ss_pred HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC--chhHHHHHHHHHHcC-CcHHHHHHcCchHHHHHHH-hcCChHHH
Q 048793 523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL--PEESVTILEAVVKRG-GLTAIVAAYNTIKKLCILL-REGSDTSR 598 (683)
Q Consensus 523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~--~~~~~~aL~~L~~l~-~~~e~~~~~g~v~~Lv~lL-~~~s~~~k 598 (683)
++.++.--+....|.. +|..|++.+.++ ......|+..|..+. +.+ ..++.++.+| ..+++.+|
T Consensus 562 aa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------e~v~rlv~~L~~~~d~~VR 629 (963)
T 4ady_A 562 GAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------TTVPRIVQLLSKSHNAHVR 629 (963)
T ss_dssp HHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------SSHHHHTTTGGGCSCHHHH
T ss_pred HHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHH
Confidence 7777765555555543 345566666533 234555565565543 332 2356666644 56889999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793 599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR 653 (683)
Q Consensus 599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~ 653 (683)
..|+.+|..+|...+.. .++..|..++.+.++.+++.|...|..+-
T Consensus 630 ~gAalALGli~aGn~~~---------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 630 CGTAFALGIACAGKGLQ---------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHHHHHHTSSSCCH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCCCcH---------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 99999999998866542 22456777777777778777776655543
No 146
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.85 E-value=0.058 Score=55.89 Aligned_cols=185 Identities=10% Similarity=0.033 Sum_probs=131.5
Q ss_pred ChhhHHHHHHHHHh-cccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHH
Q 048793 431 LPNLQVNAVTTILN-LSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLM 509 (683)
Q Consensus 431 d~~~qe~A~~aL~n-Ls~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv 509 (683)
+...+..++.-|.. ++.+.+.-...+.. +|+..|+.+...+ +...+..+..+|..|-.....-.-++.....|.-|+
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly 208 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY 208 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence 56677778777777 66677888888887 8999999999988 799999999999999988777766665578999999
Q ss_pred HhhcCCChhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHH
Q 048793 510 DLVKGGPTSSKRDALVAILNLAGDRE-TVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCI 588 (683)
Q Consensus 510 ~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~ 588 (683)
.++.+....+.+.|+..|..++.+.+ |...+.+ ++.... .....--...|+.
T Consensus 209 slv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~--------------------av~~v~-------~~~~~~p~~~Lv~ 261 (339)
T 3dad_A 209 TLCASLSRLVVKTALKLLLVFVEYSENNAPLFIR--------------------AVNSVA-------STTGAPPWANLVS 261 (339)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH--------------------HHHHHH-------HHHCCCTTHHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHccCcccchHHHH--------------------HHHHhh-------hccCCCcHHHHHH
Confidence 99997777888999999999988765 3332221 111100 0011112567777
Q ss_pred HHh---cCChHHHHHHHHHHHHHHhcCCc-h---HHHHHHhcCCcHHHHHHHhhcC--CHHHHHH
Q 048793 589 LLR---EGSDTSRESAAATLVTICRKGGS-E---MVADIAAVPGIERVIWELMESG--TARARRK 644 (683)
Q Consensus 589 lL~---~~s~~~ke~A~~aL~~L~~~~~~-~---~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~k 644 (683)
+|. .++...+.+|...+-.+..+.++ + .....+.+.|+-..+...+... .+..+++
T Consensus 262 ~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 262 ILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 776 56777888888877777665553 2 3344467778888787765554 3455554
No 147
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.014 Score=58.66 Aligned_cols=152 Identities=10% Similarity=0.049 Sum_probs=108.2
Q ss_pred hHHHHHHHh-ccCCCHHHHHHHHHHHHhhhccCc--hhH-HHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 372 TASFLINKL-ATSQSMEAANDAVYELRSLSKTDS--DSR-ACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 372 ~i~~Lv~~L-~s~~~~~~~~~A~~~L~~La~~~~--~nr-~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
.+..|...| +.. +..++..|+.+|..++.+-. .-. ... .-.+|.++..++.. ...+++.+..+|..++.
T Consensus 61 ~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~~~f~~~y~--~~llp~ll~~l~dk----k~~V~~aa~~al~~i~~ 133 (249)
T 2qk1_A 61 LLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKTPGFSKDYV--SLVFTPLLDRTKEK----KPSVIEAIRKALLTICK 133 (249)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCTTTSCHHHH--HHHHHHHHHGGGCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhcccccccHHHH--HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHH
Confidence 355677788 455 88999999999999985321 111 111 23789999999888 88899999888888864
Q ss_pred CchhHHHHhc-ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHH-hhh-cccHHHHHHhhcCCChhHHHHH
Q 048793 448 LEANKTRIME-TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTL-GRK-TRVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 448 ~~~~k~~I~~-~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i-~~~-~G~i~~Lv~lL~~~~~~~~~~A 523 (683)
.-+- ..... -+..++.|...|++. ++.+|+.++.+|..+....... ..+ -.- ...+|.|..++.+.++.++..|
T Consensus 134 ~~~~-~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA 211 (249)
T 2qk1_A 134 YYDP-LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG 211 (249)
T ss_dssp HSCT-TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred Hccc-cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3110 00110 114677888889888 7999999999999887643321 221 122 4789999999999889999999
Q ss_pred HHHHHHhcC
Q 048793 524 LVAILNLAG 532 (683)
Q Consensus 524 ~~aL~nLs~ 532 (683)
..+|..++.
T Consensus 212 ~~~l~~i~~ 220 (249)
T 2qk1_A 212 FESFAILIK 220 (249)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988865
No 148
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.40 E-value=0.043 Score=57.88 Aligned_cols=263 Identities=12% Similarity=0.083 Sum_probs=138.6
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCCCcccccccccchhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchh
Q 048793 327 VTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDS 406 (683)
Q Consensus 327 ~pn~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n 406 (683)
.+|..+|+++=-+.....-. +. + .-.++..|.+.+.++ ++-.+-.|++.|+.+...+-
T Consensus 79 s~d~~lKrLvYLyl~~~~~~-~~-----------------e-~iLv~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m-- 136 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCI-AE-----------------D-VIIVTSSLTKDMTGK-EDSYRGPAVRALCQITDSTM-- 136 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-SS-----------------C-GGGGHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTT--
T ss_pred CCCHHHHHHHHHHHHHhCCC-HH-----------------H-HHHHHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHH--
Confidence 36788899876665543211 00 0 114567788999999 99999999999999865442
Q ss_pred HHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 048793 407 RACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF 486 (683)
Q Consensus 407 r~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~ 486 (683)
. ....+.+...|.+. ++.++..|+.+...|...... +++ ++++.+-+++.+. ++.+..+|..+|+
T Consensus 137 ----~-~~l~~~lk~~L~d~----~pyVRk~A~l~~~kL~~~~pe---~v~--~~~~~l~~ll~d~-n~~V~~~Al~lL~ 201 (355)
T 3tjz_B 137 ----L-QAIERYMKQAIVDK----VPSVSSSALVSSLHLLKCSFD---VVK--RWVNEAQEAASSD-NIMVQYHALGLLY 201 (355)
T ss_dssp ----H-HHHHHHHHHHHTCS----SHHHHHHHHHHHHHHTTTCHH---HHH--TTHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHcCCC----CHHHHHHHHHHHHHHhccCHH---HHH--HHHHHHHHHhcCC-CccHHHHHHHHHH
Confidence 1 23566788888888 999999999999888654322 333 6889999999877 7889999999999
Q ss_pred HhhcCcchhhHHhhhcccHHHHHHhhcCCC---hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHH
Q 048793 487 SLSGVHAHRKTLGRKTRVVKGLMDLVKGGP---TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVT 562 (683)
Q Consensus 487 ~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~ 562 (683)
.+...+. .++..|+.-+..+. +-+.-.-+..+..++..++. -.....++.|...|... +.+.-+
T Consensus 202 ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyE 269 (355)
T 3tjz_B 202 HVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYE 269 (355)
T ss_dssp HHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHH
T ss_pred HHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHH
Confidence 9987541 14555666555432 22333333333333332200 01123445555556543 344667
Q ss_pred HHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHH
Q 048793 563 ILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARAR 642 (683)
Q Consensus 563 aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k 642 (683)
|+.++..+........ ..++..|..++.+.++..|-.|+..|..+....+... . ..-.-+..++.+++..+.
T Consensus 270 a~k~I~~l~~~~~~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v-~------~~n~~ie~li~d~n~sI~ 341 (355)
T 3tjz_B 270 AASAIVNLPGCSAKEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV-T------ACNLDLENLVTDANRSIA 341 (355)
T ss_dssp HHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred HHHHHHhccCCCHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH-H------HHHHHHHHHccCCcHhHH
Confidence 7777766654322211 2346677778888899999999999888887655321 1 122335566666666555
Q ss_pred HHHH
Q 048793 643 RKAA 646 (683)
Q Consensus 643 ~kA~ 646 (683)
.-|.
T Consensus 342 t~Ai 345 (355)
T 3tjz_B 342 TLAI 345 (355)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.37 E-value=0.037 Score=58.46 Aligned_cols=241 Identities=10% Similarity=0.014 Sum_probs=147.9
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR 454 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~ 454 (683)
..++++.+. |.+.++-..-.+..+++..++. | =++..|.+=+.++ ++-++-.|+.+|+++...+
T Consensus 72 ~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~----N~~iR~lALRtL~~I~~~~----- 135 (355)
T 3tjz_B 72 AMTKLFQSN-DPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGK----EDSYRGPAVRALCQITDST----- 135 (355)
T ss_dssp HHHGGGGCC-CHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSS----CHHHHHHHHHHHHHHCCTT-----
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCC----cHhHHHHHHHHHhcCCCHH-----
Confidence 356777887 8888888877888888764321 1 2566777778888 9999999999999986443
Q ss_pred HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793 455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
+++ ...+.+.+.|.+. ++-+|..|+-+...|...... . + .+.+..+-+++.+.++.+.-+|+.+|+.++.++
T Consensus 136 m~~--~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe--~-v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 136 MLQ--AIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFD--V-V--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp THH--HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHH--H-H--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHH--H-H--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 222 2556677777777 799999999999988765432 2 2 368999999999999999999999999998764
Q ss_pred chhHHHHhcCchHHHHHHhccCc---hh-HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 535 ETVGRLVERGIVEIVAEAMDVLP---EE-SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 535 ~n~~~iv~aG~V~~Lv~lL~~~~---~~-~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
.. ++..|+..+..+. +. ....+..+..++...+......-++.|...|++.++.+.-.|+.++..+..
T Consensus 208 ~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 208 RL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp HH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred hH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 21 3444555554321 11 222233232332221111112234445555678889999999999877755
Q ss_pred cCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 611 KGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 611 ~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.... .+ ..++..|..++.+.++.+|=-|...|..+..
T Consensus 280 ~~~~-----~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 280 CSAK-----EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp ---------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred CCHH-----HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 2211 11 2345667778888888888777666655554
No 150
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.13 E-value=0.93 Score=42.80 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=140.8
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~ 492 (683)
..+..++.+|... -..+|.+|+.++.+++.. ++-. + -.+..|+-+++.+......+..+.++.-++..
T Consensus 32 ~~l~~lI~~LDDD----lwtV~kNAl~vi~~i~~~~~el~----e--pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i- 100 (253)
T 2db0_A 32 SVLKKLIELLDDD----LWTVVKNAISIIMVIAKTREDLY----E--PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE- 100 (253)
T ss_dssp HHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCGGGH----H--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccH----HHHHHHhHHHHHHHHHHHhHHHH----H--HHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-
Confidence 5677889999887 778999999999998754 2221 1 23455666666554577777788888877753
Q ss_pred chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc-hhHHHHHHHHHHcC
Q 048793 493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP-EESVTILEAVVKRG 571 (683)
Q Consensus 493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~l~ 571 (683)
+..++ .+.||.|..=.+-|++..+-+...+|..+...... .-.+++.-+..++.+.+ .....||..+..++
T Consensus 101 --~Pe~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 101 --KPELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp --CHHHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred --CHHHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 23333 35777777777888999999999999888663221 11244556777777432 22555666666665
Q ss_pred CcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793 572 GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI 651 (683)
Q Consensus 572 ~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~ 651 (683)
.+. .....-..|-|..+|..++.-++..|+.+|.+++..++ ..+.++ ..-++=+.+.+.-++++...-|..
T Consensus 173 en~-~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii------~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 173 ENS-FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVV------IKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTT-HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHH------HHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccC-ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHH------HHHHHHhcCcHHHHHHHHHHHHHH
Confidence 443 12222346777777888999999999999999998653 355443 223334556677777777766655
Q ss_pred HH
Q 048793 652 LR 653 (683)
Q Consensus 652 l~ 653 (683)
+-
T Consensus 244 l~ 245 (253)
T 2db0_A 244 LL 245 (253)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.89 E-value=0.23 Score=53.94 Aligned_cols=231 Identities=11% Similarity=0.068 Sum_probs=137.9
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhC--cHHHHHHhhCC----CC---------CCCChhhHHHHHH
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAG--AIALLARHLGP----DT---------ASRLPNLQVNAVT 440 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G--~Ip~Lv~lL~s----~~---------~~~d~~~qe~A~~ 440 (683)
+...|...++.+.+--++..|..+.... +.|..+.+.+ .+|.++.++.. .. ......++-+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4455554214455566788888877754 5898887653 47777654431 10 0013567889999
Q ss_pred HHHhcccCchhHHHHhcccCcH--HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-----h-hhHHhhhcccHHHHHHhh
Q 048793 441 TILNLSILEANKTRIMETEGAL--NGVIEVLRSGATWEAKGNAAATIFSLSGVHA-----H-RKTLGRKTRVVKGLMDLV 512 (683)
Q Consensus 441 aL~nLs~~~~~k~~I~~~~G~I--~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-----~-~~~i~~~~G~i~~Lv~lL 512 (683)
++.-|+.+++....+... +.+ ..|+.+++......+.+-+.++|.||..... . +..+.. .++ ++++..|
T Consensus 251 ~iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~L 327 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQSL 327 (480)
T ss_dssp HHHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHHH
Confidence 999999888877777665 543 6778888876568888999999999987641 1 112322 234 5666666
Q ss_pred cCC---ChhHHHHHHHHH-------HHhc--------------C----------CcchhHHHHhc--CchHHHHHHhccC
Q 048793 513 KGG---PTSSKRDALVAI-------LNLA--------------G----------DRETVGRLVER--GIVEIVAEAMDVL 556 (683)
Q Consensus 513 ~~~---~~~~~~~A~~aL-------~nLs--------------~----------~~~n~~~iv~a--G~V~~Lv~lL~~~ 556 (683)
... +++..++--... ..|+ . ..+|..++-+. -++..|+++|.+.
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 543 333333222111 1122 0 12356666553 4678899999731
Q ss_pred c-------hhHHHHHHHHHH--------cCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793 557 P-------EESVTILEAVVK--------RGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR 610 (683)
Q Consensus 557 ~-------~~~~~aL~~L~~--------l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~ 610 (683)
. +.-..++++-++ .......+...|+=..++++|.+.++.+|.+|..++-.+-.
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0 111222332222 11223334455777778888888999999999888765543
No 152
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.69 E-value=0.01 Score=47.66 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=36.7
Q ss_pred ccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793 277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPKTGQTLA 322 (683)
Q Consensus 277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~ 322 (683)
-.|+||.+++..=..- .|||.|=..||.+||.. +..+||.|+++..
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4699999887643322 79999999999999975 3479999998765
No 153
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.45 E-value=0.012 Score=45.22 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=38.6
Q ss_pred CcccccccccCCCCceecCCcc-----ccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793 275 ADFRCPISLELMRNPVVVATGQ-----TYDRQSISLWIES-GHNTCPKTGQTLA 322 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~-----ty~r~~I~~w~~~-g~~~cP~~~~~l~ 322 (683)
+.-.|.||++-..+|.+.||.. -|=+.|+++|+.. |+.+||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456999988778888788653 6889999999974 6789999998764
No 154
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.35 E-value=0.28 Score=58.72 Aligned_cols=254 Identities=8% Similarity=0.015 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC------CCCCCCChhhHHHHHHHHHhcccCchhHHH-Hh---
Q 048793 387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG------PDTASRLPNLQVNAVTTILNLSILEANKTR-IM--- 456 (683)
Q Consensus 387 ~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~------s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~-I~--- 456 (683)
..+..|...|..++.... ..+.. -.++.+-..|. +. +...++.|+.++..++.....+.. +.
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~----~w~~reaal~algaia~~~~~~~~~~~~~~ 447 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSK----NWKFKDLYIYLFTALAINGNITNAGVSSTN 447 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcch----hHHHHHHHHHHHHHHHHHhccccCCccccc
Confidence 345667777777776542 12211 13333434444 34 778899999999998753211110 00
Q ss_pred cccCcHHH----HHHHHhcC--CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 457 ETEGALNG----VIEVLRSG--ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 457 ~~~G~I~~----Lv~lL~~~--~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
......+. ++..|.+. .++-+|..|+++|..++..- ....+ ...++.++..|.+.+..++..|+.||.++
T Consensus 448 ~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 448 NLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEYVVYTYAAITIEKI 523 (960)
T ss_dssp TTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 00012222 33334443 25889999999999998753 22222 45788999988887888999999999999
Q ss_pred cCCcc---------hhHHHHh--cCchHHHHHHhccC---------chhHHHHHHHHHHcCCcHHHHHH-cCchHHHHHH
Q 048793 531 AGDRE---------TVGRLVE--RGIVEIVAEAMDVL---------PEESVTILEAVVKRGGLTAIVAA-YNTIKKLCIL 589 (683)
Q Consensus 531 s~~~~---------n~~~iv~--aG~V~~Lv~lL~~~---------~~~~~~aL~~L~~l~~~~e~~~~-~g~v~~Lv~l 589 (683)
+...+ .+..+.. ...++.|+.++... .+....++..++...+. +.... ..-++.|...
T Consensus 524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~-~~~p~~~~l~~~L~~~ 602 (960)
T 1wa5_C 524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-SIQPLFPQLLAQFIEI 602 (960)
T ss_dssp TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHHH
T ss_pred HhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 87422 2333322 24455555666542 22244455444332211 00000 0112334444
Q ss_pred Hhc-----CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793 590 LRE-----GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655 (683)
Q Consensus 590 L~~-----~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~ 655 (683)
+.. ..+..+..+..+|..++...+......+ ...++|.+..++........+.+-.++..+-+.
T Consensus 603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~--~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL--VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH--HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 332 2445556678888888776333333332 235678888887776656666666666666554
No 155
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.31 E-value=0.2 Score=59.58 Aligned_cols=258 Identities=11% Similarity=0.066 Sum_probs=156.3
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK 452 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k 452 (683)
+..+++.+..+ +...+..|+..|..+...+...+ ....+.+..|.+.+... ... +.|+.++..|+......
T Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k----~~~--~~a~~~~~~~~~~~~~~ 86 (986)
T 2iw3_A 16 LEELFQKLSVA-TADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDK----KTA--ANAMQAVAHIANQSNLS 86 (986)
T ss_dssp HHHHHHHHTTC-CTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSH----HHH--HHHHHHHHHHTCTTTCC
T ss_pred HHHHHhhcccc-chhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhcc----CCH--HHHHHHHHHHHHhcCCC
Confidence 33466667665 55666778888887766432111 11237888888888876 333 89999999998543221
Q ss_pred --HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCC-ChhHHHHHHHHHH
Q 048793 453 --TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGG-PTSSKRDALVAIL 528 (683)
Q Consensus 453 --~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~ 528 (683)
..-.-- +.++.+...+... ...+|..|..++..+... ..+.. ..++|.|+..|.+. .-+.+..|+.+|.
T Consensus 87 ~~~e~~~~-~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 87 PSVEPYIV-QLVPAICTNAGNK-DKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp TTTHHHHH-TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcccchH-HHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 111111 3566666665544 477888877777777543 22222 35789999988765 4689999999999
Q ss_pred HhcCCcchhHHHHh--cCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHH
Q 048793 529 NLAGDRETVGRLVE--RGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATL 605 (683)
Q Consensus 529 nLs~~~~n~~~iv~--aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL 605 (683)
.|+... ...+.. -.+||.+-+.+-+. +++...|...+..+|+.-....-...+|.|++.|.+.+. ...++..|
T Consensus 160 ~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l 235 (986)
T 2iw3_A 160 AMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLL 235 (986)
T ss_dssp HHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHH
T ss_pred HHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHh
Confidence 998754 233322 46788888888764 455555555555444322222223568999998875532 33444443
Q ss_pred HHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 606 VTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 606 ~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.+-. +-.+ +-...+ .=.+|+|..=+...+..+|||++-++.+|.+
T Consensus 236 ~~~t-fv~~-v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 236 GATT-FVAE-VTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp TTCC-CCSC-CCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred hcCe-eEee-ecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 2211 1111 111111 0125555555666788999999999999998
No 156
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.17 E-value=3.1 Score=49.16 Aligned_cols=233 Identities=15% Similarity=0.083 Sum_probs=131.6
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK 452 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k 452 (683)
++.|...|... +...+..|+..|..+--... |. .++..|+..+.++. +..++..++.+|..+...
T Consensus 474 ~e~L~~~L~dd-~~~~~~~AalALGli~vGTg-n~------~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g---- 538 (963)
T 4ady_A 474 YEALKEVLYND-SATSGEAAALGMGLCMLGTG-KP------EAIHDMFTYSQETQ---HGNITRGLAVGLALINYG---- 538 (963)
T ss_dssp HHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCC-CH------HHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT----
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhhhcccC-CH------HHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC----
Confidence 45566666555 44444455555554422221 22 23445555443321 556777777777655432
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc-CCChhHHHHHHHHHHHhc
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK-GGPTSSKRDALVAILNLA 531 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs 531 (683)
. +..++.+++.|....++-+|..++.++.--...-.| ..+|..|+..+. +.+..++..|+.+|..+.
T Consensus 539 ----~-~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 539 ----R-QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL 606 (963)
T ss_dssp ----C-GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred ----C-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc
Confidence 2 256788888888655677777666666533222222 235666666654 445678899999999887
Q ss_pred CCcchhHHHHhcCchHHHHHHhccC--chh---HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHH
Q 048793 532 GDRETVGRLVERGIVEIVAEAMDVL--PEE---SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLV 606 (683)
Q Consensus 532 ~~~~n~~~iv~aG~V~~Lv~lL~~~--~~~---~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~ 606 (683)
..++ ..++.++++|... +.. +..|++.++.-.++.+ .+..|..++...++.++.+|+.+|.
T Consensus 607 ~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 607 LRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp SSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCCCHHHHHHHHHHHH
Confidence 6543 3467777766532 333 3344444432112222 3567777778889999999999998
Q ss_pred HHHhcCCch---HHHHHHhcCCcHHHHHHHhhc--CCHHHHHHHHHHHHHH
Q 048793 607 TICRKGGSE---MVADIAAVPGIERVIWELMES--GTARARRKAAALLRIL 652 (683)
Q Consensus 607 ~L~~~~~~~---~~~~~~~~~G~~~~L~~Ll~~--~~~~~k~kA~~lL~~l 652 (683)
.+.....+. .+. ++...|.....+ .++.++-.|.-..-++
T Consensus 673 ~Ig~gtnna~~~rva------~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 673 MILIQQTEKLNPQVA------DINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHSTTCCTTTCTTHH------HHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHhcCCccccchHHH------HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 887654432 122 234445555543 3555665555444444
No 157
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.14 E-value=0.015 Score=48.92 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=38.8
Q ss_pred cccccccCCCCce-ecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 278 RCPISLELMRNPV-VVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 278 ~CPis~~~m~dPv-~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
.||+|.-+...-. ++||+|.||-.|+..|...+..+||.|+.+...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888877666555 779999999999999998888999999988654
No 158
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.79 E-value=0.16 Score=55.78 Aligned_cols=245 Identities=10% Similarity=0.077 Sum_probs=152.0
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhh--CCC---CCC-CChhhHHHHHHHHH
Q 048793 372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHL--GPD---TAS-RLPNLQVNAVTTIL 443 (683)
Q Consensus 372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL--~s~---~~~-~d~~~qe~A~~aL~ 443 (683)
..+.|+..|-++ ..+.|..|+-.||.+.+.... .|..-......-.|+.+| ..- +.+ --.-++|.|+.+|.
T Consensus 175 fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 445677778788 899999999999998876531 111000002222233222 221 110 02458999999998
Q ss_pred hcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793 444 NLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA 523 (683)
Q Consensus 444 nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A 523 (683)
.+ .+-+.. . .++..++..+... ..+++..+.-.|.++ . ..+..-.+++++++.-|.+.+++++..|
T Consensus 254 aL-~hLp~e-----~-~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~---DLL~~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP-----N-DIIEQLVGFLDSG-DWQVQFSGLIALGYL---K---EFVEDKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS-----C-CHHHHHTTGGGCS-CHHHHHHHHHHHHHT---G---GGCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-HhCChh-----H-HHHHHHHhhcCCC-CeeehhhhHHHHHHH---H---HHHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence 88 652222 2 4566666656666 699999999999999 1 1111126789999999999999999999
Q ss_pred HHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc---hhHHHHHHHHHHcCCcHHH-HHHcCchHHHHHHHhcCChHHHH
Q 048793 524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP---EESVTILEAVVKRGGLTAI-VAAYNTIKKLCILLREGSDTSRE 599 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~---~~~~~aL~~L~~l~~~~e~-~~~~g~v~~Lv~lL~~~s~~~ke 599 (683)
+.+|.-++ .++... +++..|.+.|.+.. ..+...+..|+.+++.+.. .....-+|.|...+++.-..+|.
T Consensus 320 AetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 320 AELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp HHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHH
T ss_pred HHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHH
Confidence 99999998 222211 23344555555322 2244555555554433211 00113467777778889999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhcCCcHHHH-HHHhhcCCHHHHHHHHHHHH
Q 048793 600 SAAATLVTICRKGGSEMVADIAAVPGIERVI-WELMESGTARARRKAAALLR 650 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L-~~Ll~~~~~~~k~kA~~lL~ 650 (683)
.++.+|..+. .. .++.++ ..++-..++.+++.+..+.+
T Consensus 394 AVL~TL~tfL---~~----------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 394 SILNMVKNLS---EE----------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHTTTCC---CH----------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hh----------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999887666 11 123333 35777888888888877765
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.01 E-value=0.55 Score=46.61 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhcccCch--hHHHHhcccCcHHH
Q 048793 388 AANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSILEA--NKTRIMETEGALNG 464 (683)
Q Consensus 388 ~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~--~k~~I~~~~G~I~~ 464 (683)
-..+|+.-|..+|.+ ++.|..+.+++..-.|-.+|...... ....++-.++.+++.|.+.++ .-.-+... +.||.
T Consensus 72 RVcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~t-Eiipl 149 (268)
T 2fv2_A 72 RVCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTT-EIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHT-THHHH
T ss_pred HHHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhh-hHHHH
Confidence 347788888888875 46999999999887888888766221 123577778888888886543 23334466 89999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc-------cHHHHHH-hhcCCChhHHHHHHHHHHHhcCCcch
Q 048793 465 VIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR-------VVKGLMD-LVKGGPTSSKRDALVAILNLAGDRET 536 (683)
Q Consensus 465 Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G-------~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n 536 (683)
.++.++.| +.-.|..|+-++..+-.++.+-.-+..... ++..+|. +..+++++..++.+++-..||.++..
T Consensus 150 CLrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 150 CLRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 99999999 799999999999998888766555544333 3333332 33456788899999999999998877
Q ss_pred hHHHH
Q 048793 537 VGRLV 541 (683)
Q Consensus 537 ~~~iv 541 (683)
+..+-
T Consensus 229 r~aL~ 233 (268)
T 2fv2_A 229 REALR 233 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 160
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.93 E-value=0.013 Score=60.49 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=37.7
Q ss_pred cccccccccCCCC----cee----cCCccccchhhHHHHHhcC----------CCCCCCCCCccCC
Q 048793 276 DFRCPISLELMRN----PVV----VATGQTYDRQSISLWIESG----------HNTCPKTGQTLAH 323 (683)
Q Consensus 276 ~f~CPis~~~m~d----Pv~----~~~g~ty~r~~I~~w~~~g----------~~~cP~~~~~l~~ 323 (683)
.--|+||...+.+ |.. ..|||.|-..||.+|+... +.+||.|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4469999988887 432 3699999999999999741 1479999998753
No 161
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.041 Score=57.62 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=50.2
Q ss_pred CcccccccccCCCCceec-CCccc--cchhhHHHHHh-cCCCCCCCCCCccCCCCCcchHHHHHHHH
Q 048793 275 ADFRCPISLELMRNPVVV-ATGQT--YDRQSISLWIE-SGHNTCPKTGQTLAHTNLVTNTALKNLIA 337 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~-~~g~t--y~r~~I~~w~~-~g~~~cP~~~~~l~~~~l~pn~~l~~~i~ 337 (683)
-.+.||||+..|..|+-- .|.|. ||...+-+... .+...||+|++.+...+|....-+.+.+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 458999999999999954 89998 88877766654 35678999999998888887766655544
No 162
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=92.96 E-value=6.3 Score=37.26 Aligned_cols=214 Identities=13% Similarity=0.111 Sum_probs=135.4
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
.+..+..++..|..+ -.-+|.+|+..|..+++.-++-...+ +..|+.+++ ++ ....-.....+++.++.
T Consensus 30 d~~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksE----aIpltqeIa~a~G~la~ 99 (253)
T 2db0_A 30 DESVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSE----AIPLTQEIAKAFGQMAK 99 (253)
T ss_dssp CHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCC----SHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcc----cCchHHHHHHHHhHHHH
Confidence 355677889999877 78899999999999998877554433 334555554 33 44443345567777763
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
- +..++. +.+|.|..=.+-| ++.++.+-..+|..++... -..+ .+++.-+..||.+.+..-+-. +|
T Consensus 100 i---~Pe~v~--~vVp~lfanyrig-d~kikIn~~yaLeeIaran--P~l~---~~v~rdi~smltskd~~Dkl~---aL 165 (253)
T 2db0_A 100 E---KPELVK--SMIPVLFANYRIG-DEKTKINVSYALEEIAKAN--PMLM---ASIVRDFMSMLSSKNREDKLT---AL 165 (253)
T ss_dssp H---CHHHHH--HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHC--HHHH---HHHHHHHHHHTSCSSHHHHHH---HH
T ss_pred h---CHHHHH--hhHHHHHHHHhcC-CccceecHHHHHHHHHHhC--hHHH---HHHHHHHHHHhcCCChHHHHH---HH
Confidence 2 223333 3566666666678 7999999999999887643 2222 346777888998777444444 44
Q ss_pred HHhcCCcchhHHHHhcCchHHHHHHhccCchh-HHHHHHHHHHcCC-cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHH
Q 048793 528 LNLAGDRETVGRLVERGIVEIVAEAMDVLPEE-SVTILEAVVKRGG-LTAIVAAYNTIKKLCILLREGSDTSRESAAATL 605 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~-~~~aL~~L~~l~~-~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL 605 (683)
-.++.-.+|.-+-+ .-.+|.|..+|.+.++. ...|+..|.+++. ++..+.. +...+.-+...|..++......|
T Consensus 166 nFi~alGen~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki---i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 166 NFIEAMGENSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV---VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp HHHHTCCTTTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH---HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred HHHHHHhccCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH---HHHHHHHhcCcHHHHHHHHHHHH
Confidence 44454455554443 23578888888876665 6667777776664 3433321 23333445567777777777777
Q ss_pred HHHHh
Q 048793 606 VTICR 610 (683)
Q Consensus 606 ~~L~~ 610 (683)
..|..
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 163
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.88 Score=45.77 Aligned_cols=184 Identities=12% Similarity=0.101 Sum_probs=110.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCcc---hhhH-HhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcc---h-
Q 048793 465 VIEVLRSGATWEAKGNAAATIFSLSGVHA---HRKT-LGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRE---T- 536 (683)
Q Consensus 465 Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~---~~~~-i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---n- 536 (683)
|-+-|.+. +...|..|...|..+..... .... +......++.+-..+.+.+..+...++.+|..++..-. +
T Consensus 14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44566666 68999999988877653211 1111 11112345566678888888899999999988865321 1
Q ss_pred hH--HHHhcCchHHHHHH-hccCch-hHHHHHHHHHHc---CCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793 537 VG--RLVERGIVEIVAEA-MDVLPE-ESVTILEAVVKR---GGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC 609 (683)
Q Consensus 537 ~~--~iv~aG~V~~Lv~l-L~~~~~-~~~~aL~~L~~l---~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~ 609 (683)
.. ...-..+++.|++- |.+... ....++..+..+ +...+. .++.+...+.+.+|+++..++..|..+.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 12 22334678888875 654433 344555544332 221111 1234444567789999998888887775
Q ss_pred hcCCchH--HHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793 610 RKGGSEM--VADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656 (683)
Q Consensus 610 ~~~~~~~--~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~ 656 (683)
...+... ....+ ..+++.+..++.+.++.+|..|..++-.+-+|-
T Consensus 168 ~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 168 AAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 4322111 11111 134667778899999999999999998887754
No 164
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.09 E-value=0.13 Score=53.76 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=50.6
Q ss_pred CCcccccccccCCCCceec-CCccc--cchhhHHHHHh-cCCCCCCCCCCccCCCCCcchHHHHHHHH
Q 048793 274 PADFRCPISLELMRNPVVV-ATGQT--YDRQSISLWIE-SGHNTCPKTGQTLAHTNLVTNTALKNLIA 337 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv~~-~~g~t--y~r~~I~~w~~-~g~~~cP~~~~~l~~~~l~pn~~l~~~i~ 337 (683)
.-.+.||||+..|..|+-- .|.|. ||...+-+... .+...||+|++.+...+|..+.-+.+.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 3467999999999999954 89988 88877777665 35678999999998888887766655544
No 165
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.03 E-value=4 Score=40.02 Aligned_cols=116 Identities=14% Similarity=0.031 Sum_probs=76.3
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhCCCC----C---CCChhhHHHHHHHHHhccc
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLGPDT----A---SRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~s~~----~---~~d~~~qe~A~~aL~nLs~ 447 (683)
.++.|+++...+...+-+..|+..-..++.. -..+ ..||+..|+.+|..-. . ..+...+..++.+|..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 3455555423333333445555433433322 2223 3678888888875310 0 1145678888999998887
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA 493 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~ 493 (683)
+..+...+...++++..|+..|.+. ++.++..++.+|..+|..++
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSS
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCC
Confidence 7777788888778999999999877 69999999999988887654
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.89 E-value=1 Score=46.38 Aligned_cols=149 Identities=14% Similarity=0.057 Sum_probs=90.6
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh--CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA--GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT 453 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~--G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~ 453 (683)
+...+.+..++..+.-+++.+.|+-.+. ..|..+... -+++.+...+.+. +..++..++++++|++.......
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~----nknl~iA~ATl~~NlAv~~~~~~ 226 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGS----NKNIHIALATLALNYSVCFHKDH 226 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSC----CHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHHHHhhcC
Confidence 3344433225667888999999987755 477777653 4555566666555 88999999999999986311100
Q ss_pred HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
..-.....+..+..+++...+.|+...+.-+|.+|...+.....+...-|+-..+-++.....+.-...++..|.+
T Consensus 227 ~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 227 NIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 0000112455566667665578999999999999987765555555434444433344433233333455555544
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.58 E-value=1 Score=45.21 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=95.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhccCch---hHHH--HHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 374 SFLINKLATSQSMEAANDAVYELRSLSKTDSD---SRAC--IAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~---nr~~--i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
+.+-..+... +..++..++..|..++..... .+.. ..-...+|.|+. .|.+. ...++..|..++..+..
T Consensus 58 ~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~----k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 58 TLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS----RATTKTQSMSCILSLCG 132 (278)
T ss_dssp HHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHH
Confidence 3444566666 899999999999888754321 1221 222457888885 57777 88899999888877653
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-----hhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-----HRKTLGRKTRVVKGLMDLVKGGPTSSKRD 522 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-----~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~ 522 (683)
...... -+++.++..+++. ++.++..++..|..+...-. .+..+ ..+++.+..+|.+.++.++..
T Consensus 133 ~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l---~~i~~~l~k~l~d~~~~VR~a 202 (278)
T 4ffb_C 133 LDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFL---PELLKHVPQLAGHGDRNVRSQ 202 (278)
T ss_dssp TSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHH---HHHGGGHHHHHTCSSHHHHHH
T ss_pred hcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHH---HHHHHHHHHHHhCCcHHHHHH
Confidence 221111 1344455566666 79999988888887654211 11111 235667888889999999999
Q ss_pred HHHHHHHhcCC
Q 048793 523 ALVAILNLAGD 533 (683)
Q Consensus 523 A~~aL~nLs~~ 533 (683)
|..++..+-.+
T Consensus 203 A~~l~~~ly~~ 213 (278)
T 4ffb_C 203 TMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 168
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.56 E-value=4.6 Score=42.79 Aligned_cols=174 Identities=16% Similarity=0.143 Sum_probs=108.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhCC----CC---CCCChhhHHHHHHHHHhccc
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLGP----DT---ASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~s----~~---~~~d~~~qe~A~~aL~nLs~ 447 (683)
.+..|.++...+.....+..|+..-...+.. -..++ .+|+..|+.+|.. +. ...+...+..++.+|..+..
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN 149 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 149 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence 4555655423333334555666544444322 23344 6788899988842 10 01256788889999999887
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc--h-hhHH----------hhhcccHHHHHHhhcC
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA--H-RKTL----------GRKTRVVKGLMDLVKG 514 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~--~-~~~i----------~~~~G~i~~Lv~lL~~ 514 (683)
+..+...+...+.+|..|+..|.+. ++.++..+..+|..+|..++ + ...+ ++ ..-...+|..|.+
T Consensus 150 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 150 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKS 227 (383)
T ss_dssp SHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHTTST
T ss_pred chhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHHc
Confidence 8778888888889999999999877 69999999999998887653 2 2222 22 3457778888886
Q ss_pred C-ChhHHHHHHHHHHH-hcCCcch-------hHHHHhcCchHHHHHHhc
Q 048793 515 G-PTSSKRDALVAILN-LAGDRET-------VGRLVERGIVEIVAEAMD 554 (683)
Q Consensus 515 ~-~~~~~~~A~~aL~n-Ls~~~~n-------~~~iv~aG~V~~Lv~lL~ 554 (683)
+ +.+.+. ++..|.| |....++ |..+...|..+.+-. |.
T Consensus 228 ~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr 274 (383)
T 3eg5_B 228 GTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LR 274 (383)
T ss_dssp TSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HT
T ss_pred cCcHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hh
Confidence 4 334444 4444444 4444332 334455676665555 54
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=90.47 E-value=8.3 Score=38.22 Aligned_cols=203 Identities=15% Similarity=0.122 Sum_probs=123.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHh-------hCCCCC-CCChhhHHHHHHHHH
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARH-------LGPDTA-SRLPNLQVNAVTTIL 443 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~l-------L~s~~~-~~d~~~qe~A~~aL~ 443 (683)
+..|+..|. +++.++.|+.+|..--..-++---.+=. -|.+..|+.= |..+.- .....=..+|++.|.
T Consensus 5 i~qli~~L~---~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 5 IYQWINELS---SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHTS---STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 334555554 4556788777765532222222222223 3777776532 222100 001122356777777
Q ss_pred hcccCchhHHHHhcccCcHHHHHHHHhcCCC----HHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHHHhhcCCCh
Q 048793 444 NLSILEANKTRIMETEGALNGVIEVLRSGAT----WEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLMDLVKGGPT 517 (683)
Q Consensus 444 nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~----~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv~lL~~~~~ 517 (683)
-++.|++.|....++ ...--|..+|+.... .-.|-.+.+++..|...++ .-.-+.. .+.||..++.+..|+.
T Consensus 82 cvAshpetr~~Fl~a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLrime~Gse 159 (268)
T 2fv2_A 82 CVASHPETRSAFLAA-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRIMESGSE 159 (268)
T ss_dssp HHHHCTTTHHHHHHT-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHHHHHSCH
T ss_pred HHHcCcchhhHHHHc-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHHHhhccH
Confidence 789999999999987 777677777875421 3567788999999987654 2222234 6899999999999999
Q ss_pred hHHHHHHHHHHHhcCCcchhHHHHh-cC-------chHHHHHHhccCc--hhHHHHHHHHHHcCCcHHHHHHc
Q 048793 518 SSKRDALVAILNLAGDRETVGRLVE-RG-------IVEIVAEAMDVLP--EESVTILEAVVKRGGLTAIVAAY 580 (683)
Q Consensus 518 ~~~~~A~~aL~nLs~~~~n~~~iv~-aG-------~V~~Lv~lL~~~~--~~~~~aL~~L~~l~~~~e~~~~~ 580 (683)
-.+.-|.-++..+-.++.+...++. +. +...+|.-+.+.+ .....++..-..++.++..+.+.
T Consensus 160 lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 160 LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999998888877766654 12 2222333232222 22555555556677777666544
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=90.29 E-value=2.7 Score=43.13 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=97.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHH----HHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALL----ARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~L----v~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
+..+.+.+ +- ..+.+.-++..+|.++.+. .....+.+.+.-..+ ...+.+. ..+..+-.++.++.|+-.+
T Consensus 105 l~~l~kil-~W-P~~~~fPvLDLlRl~~l~p-~~~~~~~~~~~~~~l~~~l~~~~~~~---~~p~n~ml~lR~l~NlF~~ 178 (304)
T 3ebb_A 105 LQILWKAI-NC-PEDIVFPALDILRLSIKHP-SVNENFCNEKEGAQFSSHLINLLNPK---GKPANQLLALRTFCNCFVG 178 (304)
T ss_dssp HHHHHHHH-TS-CTTTCHHHHHHHHHHTTSH-HHHHHHHSTTTHHHHHHHHHHTTCTT---SCHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHH-cC-CHHhHHHHHHHHHHHHcCc-cHHHHhhccccchHHHHHHHHhcCCC---CChHHHHHHHHHHHHccCC
Confidence 44555655 33 4566777888888776643 333444433222233 3334322 2566788999999999998
Q ss_pred chhHHHHhcc-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-CChhHHHHHHHH
Q 048793 449 EANKTRIMET-EGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-GPTSSKRDALVA 526 (683)
Q Consensus 449 ~~~k~~I~~~-~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-~~~~~~~~A~~a 526 (683)
...+..+... ...++.+...+... +...+..++.+++|++..-......-....++..+..++.. .+.+....++.|
T Consensus 179 ~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 179 QAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 8888776642 12344444443333 67899999999999987421111111112244444455543 356788889999
Q ss_pred HHHhcCCcchhHHHHhc
Q 048793 527 ILNLAGDRETVGRLVER 543 (683)
Q Consensus 527 L~nLs~~~~n~~~iv~a 543 (683)
|.+|...+.....+++.
T Consensus 258 LGtL~~~~~~~~~lak~ 274 (304)
T 3ebb_A 258 LGTLISDDSNAVQLAKS 274 (304)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHH
Confidence 99998766555555543
No 171
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.13 E-value=0.12 Score=43.88 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=28.8
Q ss_pred Cccccccccc-CCCCcee--cCCccccchhhHHHHH
Q 048793 275 ADFRCPISLE-LMRNPVV--VATGQTYDRQSISLWI 307 (683)
Q Consensus 275 ~~f~CPis~~-~m~dPv~--~~~g~ty~r~~I~~w~ 307 (683)
+++.|+||.+ ...+||. +.||++||+.|++.|.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4678999996 5899998 8999999999999844
No 172
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=87.55 E-value=13 Score=39.28 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=103.6
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhCCC----CC---CCChhhHHHHHHHHHhccc
Q 048793 376 LINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLGPD----TA---SRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~s~----~~---~~d~~~qe~A~~aL~nLs~ 447 (683)
.|+.|.++...+.....+..|+..-..++.. -..+. .||+..|+.+|..- .. ..+...+..++.+|..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 4555655423332233445555443433322 12232 57788888877421 00 1145678888999988887
Q ss_pred CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc--h-hhHHh---------hhcccHHHHHHhhcCC
Q 048793 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA--H-RKTLG---------RKTRVVKGLMDLVKGG 515 (683)
Q Consensus 448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~--~-~~~i~---------~~~G~i~~Lv~lL~~~ 515 (683)
+..+...+...++++..|+..|.+. ++.++..++.+|..+|..++ + ...+. ....-...||+.|.++
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 7777777887778999999999776 68999999989988887654 3 22221 1133566688888754
Q ss_pred ChhHHHHHHHHHHH-hcCCcch-------hHHHHhcCchHHHHHH
Q 048793 516 PTSSKRDALVAILN-LAGDRET-------VGRLVERGIVEIVAEA 552 (683)
Q Consensus 516 ~~~~~~~A~~aL~n-Ls~~~~n-------~~~iv~aG~V~~Lv~l 552 (683)
...--..++..+.| |....++ |..+..+|.-+.|-.+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~L 211 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 211 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 43333444555555 4444432 3445566766665443
No 173
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.05 E-value=7.9 Score=46.08 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc------CCChhHHHHHHHHHHHhcCCcchhHHHHhc-----C
Q 048793 476 EAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK------GGPTSSKRDALVAILNLAGDRETVGRLVER-----G 544 (683)
Q Consensus 476 ~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~------~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a-----G 544 (683)
..|..|..+|..|+.... ..+. .-.++.+-.++. +.+...++.|+.++..++.....+..-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~--~~v~--~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE--VLVT--NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH--HHHH--HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc--hhHH--HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456677788888876543 2222 124444445555 345568889999999997643222110110 2
Q ss_pred chHHHHH----HhccC----chhHHHHHHHHHHcCCc--HHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhc
Q 048793 545 IVEIVAE----AMDVL----PEESVTILEAVVKRGGL--TAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRK 611 (683)
Q Consensus 545 ~V~~Lv~----lL~~~----~~~~~~aL~~L~~l~~~--~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~ 611 (683)
..+.++. .|.+. +-....|+..|...+.. ++. ....++.++..|...++.++.+|+.+|.++|..
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 2333333 23322 23477788888776643 222 113466777777777899999999999999974
No 174
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=86.08 E-value=21 Score=42.12 Aligned_cols=154 Identities=15% Similarity=0.082 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALN 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~ 463 (683)
+...+..++.+|..++..-...- ...++.++..|..- ..+++.++..+++++..++.. ..+. .... .+++
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~--~vl~ 532 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHP-VMIN--SVLP 532 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT--TTHH
T ss_pred chHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH--HHHH
Confidence 78888999999999887643211 23445555544211 112788999999999998754 2222 2333 5888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhcccHHHHHHhhcCC--ChhHHHHHHHHHHHhcCCc--chhH
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKTRVVKGLMDLVKGG--PTSSKRDALVAILNLAGDR--ETVG 538 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~--~n~~ 538 (683)
.|+..|.+ +.++..|+.+|.+++.. .+..+. -..+.+..|..++.++ +...+..+..++..+.... +...
T Consensus 533 ~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 533 LVLHALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888843 67899999999999853 222222 1134566666777653 3567788888888887543 3333
Q ss_pred HHHhcCchHHHHHHh
Q 048793 539 RLVERGIVEIVAEAM 553 (683)
Q Consensus 539 ~iv~aG~V~~Lv~lL 553 (683)
..+ ...++++...+
T Consensus 608 ~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 608 KNL-HSLISPYIQQL 621 (963)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH
Confidence 322 23455555544
No 175
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=85.90 E-value=17 Score=35.32 Aligned_cols=161 Identities=13% Similarity=0.075 Sum_probs=101.6
Q ss_pred CcHHHHHHHHhc----CC------CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 460 GALNGVIEVLRS----GA------TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 460 G~I~~Lv~lL~~----~~------~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
||+..|+.+|.. +. +......+..+|..+.........+....+++..|+..|.+.++..+..++..|..
T Consensus 43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~ 122 (233)
T 2f31_A 43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA 122 (233)
T ss_dssp HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 678888888763 11 23456678899999988888777777778899999999988888999999999999
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhc-CChHHHHHHHHHHHHH
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLRE-GSDTSRESAAATLVTI 608 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~-~s~~~ke~A~~aL~~L 608 (683)
+|..++. .|+-+.+++.+. .... .........++..+++ .+..-+-.+...+-.+
T Consensus 123 lc~~~~~------~G~~~~VL~Al~-----------~~~~-------~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 123 LCILPQP------EDMNERVLEAMT-----------ERAE-------MDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHTCSSS------SCHHHHHHHHHH-----------HHHH-------HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHhCCCC------CChHHHHHHHHH-----------HHHH-------hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 9987641 111222222222 1110 0111234445555543 3334444444444444
Q ss_pred HhcCCc----hHHHHHHhcCCcHHHHHHHhhcCCHHHHHH
Q 048793 609 CRKGGS----EMVADIAAVPGIERVIWELMESGTARARRK 644 (683)
Q Consensus 609 ~~~~~~----~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~k 644 (683)
....++ -..+.-+...|+.+.+-.|-..+++....+
T Consensus 179 i~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 179 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 444333 234555678899999998887777776655
No 176
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.52 E-value=8.6 Score=45.67 Aligned_cols=209 Identities=14% Similarity=0.076 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhh---CCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccC
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL---GPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEG 460 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL---~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G 460 (683)
+...++.|+..+..++..-.... ...+|.++.++ .+. +.++.++..++++|..++..- .+. .... .
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~--d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~--~ 546 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYE--KLNVKLLGTALETMGSYCNWLMENP-AYIP--P 546 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHTHHHHC-----CHH--H
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCcc--ccCHHHHHHHHHHHHHHHHHHhcCH-HHHH--H
Confidence 66788899999999876544221 13344444433 211 117889999999999987431 111 2222 3
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhcccHHHHHHhhcCC--ChhHHHHHHHHHHHhcCC--cc
Q 048793 461 ALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKTRVVKGLMDLVKGG--PTSSKRDALVAILNLAGD--RE 535 (683)
Q Consensus 461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~--~~ 535 (683)
+++.|+..|. +.++..|+.++.+++..- +..+. .-.+.+..|..++.++ +...+..+..++..+... .+
T Consensus 547 vl~~l~~~l~----~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~ 620 (971)
T 2x1g_F 547 AINLLVRGLN----SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPE 620 (971)
T ss_dssp HHHHHHHHHH----SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHhC----hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHH
Confidence 6677777773 467899999999998532 22222 1135667777778764 356777788888877653 23
Q ss_pred hhHHHHhcCchHHHHHHhc----cC---c---hhHHHHHHHHHHcC----Cc----------HHHHH--HcCchHHHHHH
Q 048793 536 TVGRLVERGIVEIVAEAMD----VL---P---EESVTILEAVVKRG----GL----------TAIVA--AYNTIKKLCIL 589 (683)
Q Consensus 536 n~~~iv~aG~V~~Lv~lL~----~~---~---~~~~~aL~~L~~l~----~~----------~e~~~--~~g~v~~Lv~l 589 (683)
++...++ ..+++++..+. .. + .....++..|+... .. .+... .....+.+..+
T Consensus 621 ~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 699 (971)
T 2x1g_F 621 EIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRI 699 (971)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHH
Confidence 3333222 34455554442 11 1 12334444443321 11 00000 01234555555
Q ss_pred Hhc--CChHHHHHHHHHHHHHHh
Q 048793 590 LRE--GSDTSRESAAATLVTICR 610 (683)
Q Consensus 590 L~~--~s~~~ke~A~~aL~~L~~ 610 (683)
+.. .+....+.+++++..++.
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHH
Confidence 543 367889999999888765
No 177
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=85.48 E-value=9.5 Score=38.17 Aligned_cols=174 Identities=11% Similarity=0.060 Sum_probs=101.8
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhC-cHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc---Cch
Q 048793 375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAG-AIALLARHLGPDTASRLPNLQVNAVTTILNLSI---LEA 450 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G-~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~---~~~ 450 (683)
.+...|-+. |...+.+|+..|......++ ..++...+ .++.+.--+.+. +..+...++.+|..+.. +.+
T Consensus 50 ~~~~~lfs~-d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~----N~~v~~~~L~~L~~l~~~l~~~~ 122 (266)
T 2of3_A 50 SLMSQLFHK-DFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFET----NPAALIKVLELCKVIVELIRDTE 122 (266)
T ss_dssp HHHHHHTCS-CHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSC----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666666 88888999998888665433 23332222 233333334455 78888888877776531 111
Q ss_pred hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793 451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530 (683)
Q Consensus 451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
++-.=.+..-.+|.|+.-+..+ ...+|..+-.+|..++.. ..-...++.+++-+++.+.+.+..++..|..+
T Consensus 123 y~~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 123 TPMSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CCCCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 1111111113678888877655 467888877777766532 11134667788888888888998888888877
Q ss_pred cCCcchhHHHHhcCch---HHHHHHhccC-chhHHHHHHHH
Q 048793 531 AGDRETVGRLVERGIV---EIVAEAMDVL-PEESVTILEAV 567 (683)
Q Consensus 531 s~~~~n~~~iv~aG~V---~~Lv~lL~~~-~~~~~~aL~~L 567 (683)
-...+-. ...++ +.+..++.+. ..+...|+..+
T Consensus 195 i~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~l 231 (266)
T 2of3_A 195 ITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVL 231 (266)
T ss_dssp HHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred HHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 4322111 13356 6677777643 23333444433
No 178
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=84.89 E-value=19 Score=37.92 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=102.4
Q ss_pred HHHhcccCcHHHHHHHHhc----C------CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793 453 TRIMETEGALNGVIEVLRS----G------ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRD 522 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~----~------~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~ 522 (683)
...+ . +|+..|+.+|.. + .+......+..+|..+.....+...+....+.|..|+..|.+..+.++..
T Consensus 104 ~~F~-~-~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHH-H-HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHH-H-ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 4444 4 678889998852 1 12355677889999998888777777777899999999999888999999
Q ss_pred HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhc-CChHHHHHH
Q 048793 523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLRE-GSDTSRESA 601 (683)
Q Consensus 523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~-~s~~~ke~A 601 (683)
|+..|..+|..++. .|+-+.+++.+. .+.. .........++..|.+ .+...+-.+
T Consensus 182 aleLL~~lc~~~~~------~gG~~~VL~Al~-----------~~~~-------~~e~~RF~~lv~~L~~~~~~e~~~~~ 237 (383)
T 3eg5_B 182 AAKLLSALCILPQP------EDMNERVLEAMT-----------ERAE-------MDEVERFQPLLDGLKSGTSIALKVGC 237 (383)
T ss_dssp HHHHHHHHHTCCSS------TTHHHHHHHHHH-----------HHHH-------HHTSCTTHHHHHTTSTTSCHHHHHHH
T ss_pred HHHHHHHHHhCcCc------CCcHHHHHHHHH-----------HHHH-------hCCCCcHHHHHHHHHccCcHHHHHHH
Confidence 99999999987641 111222222221 1111 1112234455555554 344444444
Q ss_pred HHHHHHHHhcCCc----hHHHHHHhcCCcHHHHHHHhhcCCHHHHH
Q 048793 602 AATLVTICRKGGS----EMVADIAAVPGIERVIWELMESGTARARR 643 (683)
Q Consensus 602 ~~aL~~L~~~~~~----~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~ 643 (683)
...+-.+....++ -..+.-+...|+.+.+..|-..+++....
T Consensus 238 m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 238 LQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 4444444444333 13444566789999888876655655443
No 179
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.80 E-value=3.2 Score=41.67 Aligned_cols=134 Identities=10% Similarity=0.041 Sum_probs=89.9
Q ss_pred cCCCHHHHHHHHHHHHhhhccCc--hhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcc
Q 048793 382 TSQSMEAANDAVYELRSLSKTDS--DSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMET 458 (683)
Q Consensus 382 s~~~~~~~~~A~~~L~~La~~~~--~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~ 458 (683)
++ +..+...++..|..+...-. ..+-.-.+ .-.+|.|+.-|+.. ...+++.+-.+|..+.. +...
T Consensus 98 d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~----k~~vR~~~r~il~~l~~-------v~~~ 165 (266)
T 2of3_A 98 ET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEA----KDNMRTSVRDIVNVLSD-------VVGP 165 (266)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCS----SHHHHHHHHHHHHHHHH-------HHCH
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHHHHH-------HCCH
Confidence 45 77777777777766532111 01111111 24789999988877 77888888887766642 2222
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccH---HHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793 459 EGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVV---KGLMDLVKGGPTSSKRDALVAILNLAGD 533 (683)
Q Consensus 459 ~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i---~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
....+.++.-+++. +...|+.++..+.++-...... . ..++ +.+..++.+.+..++..|+.++..+-.+
T Consensus 166 ~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~----~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 166 LKMTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS----P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG----G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC----c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 13566677777776 7999999998888875433222 2 3578 9999999999999999999988766543
No 180
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.49 E-value=9.4 Score=41.32 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=71.2
Q ss_pred cCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCc
Q 048793 382 TSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGA 461 (683)
Q Consensus 382 s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~ 461 (683)
.+ +...++-|+.-|...-++-++... -+|..+++|.... |..++..|+..|-.+|.+ ++-.+|
T Consensus 39 kg-~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDe----d~~IR~qaik~Lp~~ck~-~~i~ki------ 101 (507)
T 3u0r_A 39 KG-GTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDE----DVSIRRQAIKELPQFATG-ENLPRV------ 101 (507)
T ss_dssp GS-CHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCS----SHHHHHHHHHHGGGGCCT-TCHHHH------
T ss_pred CC-CHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc----cHHHHHHHHHhhHHHhhh-hhhhhH------
Confidence 45 788999999999999998886554 4678899999999 999999999999999988 554444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793 462 LNGVIEVLRSGATWEAKGNAAATIFSLSGV 491 (683)
Q Consensus 462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~ 491 (683)
...|+++|+.. +.......-.+|..|-..
T Consensus 102 aDvL~QlLqtd-d~~E~~~V~~sL~sllk~ 130 (507)
T 3u0r_A 102 ADILTQLLQTD-DSAEFNLVNNALLSIFKM 130 (507)
T ss_dssp HHHHHHHTTCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-chHHHHHHHHHHHHHHhc
Confidence 45689999877 566666666666655443
No 181
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.35 E-value=33 Score=40.53 Aligned_cols=171 Identities=9% Similarity=0.030 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh---c--CCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHH
Q 048793 474 TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV---K--GGPTSSKRDALVAILNLAGDRETVGRLVERGIVEI 548 (683)
Q Consensus 474 ~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~ 548 (683)
+...++.|..+|..++..-.... ...++.++.++ . +..+.++..++++|..++..-....... ..+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 57789999999999876432111 12333344333 3 2367789999999999886422111111 134555
Q ss_pred HHHHhccCchhHHHHHHHHHHcCCc-HH-HHHHc-CchHHHHHHHhc--CChHHHHHHHHHHHHHHhcCCchHHHHHHhc
Q 048793 549 VAEAMDVLPEESVTILEAVVKRGGL-TA-IVAAY-NTIKKLCILLRE--GSDTSRESAAATLVTICRKGGSEMVADIAAV 623 (683)
Q Consensus 549 Lv~lL~~~~~~~~~aL~~L~~l~~~-~e-~~~~~-g~v~~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~ 623 (683)
|+..|. +.....|..++..++.. .. ..... .-+..+..++.+ .+...++.+..++..+....+.......+
T Consensus 551 l~~~l~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~-- 626 (971)
T 2x1g_F 551 LVRGLN--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL-- 626 (971)
T ss_dssp HHHHHH--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH--
T ss_pred HHHHhC--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH--
Confidence 666663 45555555555554421 11 11111 123444555665 45788899999998887754322222222
Q ss_pred CCcHHHHH----HHhhcC--CHHHHHHHHHHHHHHHh
Q 048793 624 PGIERVIW----ELMESG--TARARRKAAALLRILRR 654 (683)
Q Consensus 624 ~G~~~~L~----~Ll~~~--~~~~k~kA~~lL~~l~~ 654 (683)
..+++++. .+.+.. ++..+.++...+..+..
T Consensus 627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 12333333 333333 44456666667766655
No 182
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=82.57 E-value=1.1 Score=44.41 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=36.7
Q ss_pred ccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCCCCCccCCC
Q 048793 277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPKTGQTLAHT 324 (683)
Q Consensus 277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~~~ 324 (683)
..|.||.++..--+.- .||+.|-+.|+.+|+.. +...||.|+.+.+..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3599998887644433 38999999999999975 457999999876543
No 183
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=79.68 E-value=17 Score=39.43 Aligned_cols=116 Identities=21% Similarity=0.205 Sum_probs=82.0
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHH
Q 048793 471 SGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIV 549 (683)
Q Consensus 471 ~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~L 549 (683)
+| +...++.|+..|...... ++.. ..+|.++++|..+.+..++..|+..|..+|.+ ++..+++ ..|
T Consensus 39 kg-~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia-----DvL 105 (507)
T 3u0r_A 39 KG-GTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA-----DIL 105 (507)
T ss_dssp GS-CHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-----HHH
T ss_pred CC-CHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-----HHH
Confidence 46 689999999999876554 3322 34788999999999999999999999999998 7766664 478
Q ss_pred HHHhccCch----hHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHH
Q 048793 550 AEAMDVLPE----ESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLV 606 (683)
Q Consensus 550 v~lL~~~~~----~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~ 606 (683)
+++|..+.. .+-.+|..|... ++. +.+.+|..-+.++.+.+|+.+...|.
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~--Dpk-----~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKM--DAK-----GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHH--CHH-----HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhc--ChH-----HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 999985432 255555555442 111 23455555566677788888777763
No 184
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=78.88 E-value=2.9 Score=37.60 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=56.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-----C---CHHHHHHHHHHHHHHHh
Q 048793 583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES-----G---TARARRKAAALLRILRR 654 (683)
Q Consensus 583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-----~---~~~~k~kA~~lL~~l~~ 654 (683)
.+.|.+.|...++..+-+|+.+|..||.++....+..+.....+++.|....-. | ...||.+|..++..|..
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 567778888899999999999999999988777777766666555555543222 2 26899999999999987
Q ss_pred hhc
Q 048793 655 WAA 657 (683)
Q Consensus 655 ~~~ 657 (683)
...
T Consensus 131 ~~~ 133 (140)
T 1vdy_A 131 EEN 133 (140)
T ss_dssp CSS
T ss_pred cCC
Confidence 543
No 185
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=78.56 E-value=31 Score=35.77 Aligned_cols=109 Identities=9% Similarity=0.135 Sum_probs=84.9
Q ss_pred HHhcccCchh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc-CCChhH
Q 048793 442 ILNLSILEAN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK-GGPTSS 519 (683)
Q Consensus 442 L~nLs~~~~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~-~~~~~~ 519 (683)
|+||-.++.+ -.-.++. +++..+..+++-. +.+..+..+..|...|....-+..=. ...+|.++..+. ++++++
T Consensus 266 LL~LLmHdSnAIDGFVk~-DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRS-DGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHCCSHHHHHHHHHT-THHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhcccccccceeec-ccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcce
Confidence 4566666544 5667787 8899999999877 68888899999999888766554433 367888888875 566788
Q ss_pred HHHHHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhc
Q 048793 520 KRDALVAILNLAGDRE-TVGRLVERGIVEIVAEAMD 554 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~ 554 (683)
.-.....|.|...+.. .+..++..|+|+.|...+.
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 8899999999988876 4566688999999998875
No 186
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=77.87 E-value=47 Score=34.92 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=101.4
Q ss_pred CcHHHHHHHHhc----CC------CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793 460 GALNGVIEVLRS----GA------TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529 (683)
Q Consensus 460 G~I~~Lv~lL~~----~~------~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
||+..|+.+|.. +. +......++.+|..+.....+...+....+++..|+..|.+.++..+..++..|..
T Consensus 47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~a 126 (386)
T 2bnx_A 47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA 126 (386)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 667778877752 11 23556778889999988887777777778899999999988888899999999999
Q ss_pred hcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhc-CChHHHHHHHHHHHHH
Q 048793 530 LAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLRE-GSDTSRESAAATLVTI 608 (683)
Q Consensus 530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~-~s~~~ke~A~~aL~~L 608 (683)
+|..++.. |.-..+++.+. .... .........++..+.+ .+...+-.+...+-.|
T Consensus 127 lc~~~~~~------G~~~~VL~Al~-----------~~~~-------~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 127 LCILPQPE------DMNERVLEAMT-----------ERAE-------MDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHTCCSST------THHHHHHHHHH-----------HHHH-------HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCC------ChHHHHHHHHH-----------HHHH-------hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99876410 21222222222 1110 1112234456666653 3344444444444444
Q ss_pred HhcCCc----hHHHHHHhcCCcHHHHHHHhhcCCHHHHHH
Q 048793 609 CRKGGS----EMVADIAAVPGIERVIWELMESGTARARRK 644 (683)
Q Consensus 609 ~~~~~~----~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~k 644 (683)
....++ -..+.-+...|+.+.|-.|-..+++.....
T Consensus 183 v~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 444433 144555778899999888877777666544
No 187
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=77.80 E-value=1.8 Score=36.08 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=40.5
Q ss_pred CCCcccccccccCCCCceecCCc------cccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793 273 VPADFRCPISLELMRNPVVVATG------QTYDRQSISLWIESGHNTCPKTGQTLAHTN 325 (683)
Q Consensus 273 ~p~~f~CPis~~~m~dPv~~~~g------~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~ 325 (683)
+++.++||||+++-..-|.+.+. .-|+..++.+-..+|. .=|.+|+|++...
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~sM 81 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITASI 81 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTTT
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHhh
Confidence 45678999999999999988543 2499999999988753 4588888887553
No 188
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=74.72 E-value=35 Score=35.35 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=84.5
Q ss_pred HHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHh-cCCC
Q 048793 396 LRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLR-SGAT 474 (683)
Q Consensus 396 L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~-~~~~ 474 (683)
|.++.-++...-+-+++.++|..+....... +.++.......|+..|....-+.. .-...+|.++..+. ++ +
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp----N~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~-e 338 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP----NNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHP-D 338 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS----CHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCC-C
T ss_pred HHHHHhcccccccceeecccceeEEEEeecC----CcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCC-C
Confidence 3444455555788899999999999999998 999999999999988754433322 22257898998887 45 6
Q ss_pred HHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc
Q 048793 475 WEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK 513 (683)
Q Consensus 475 ~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~ 513 (683)
.++.-...+.|.|...+...-+.+.-..|+|+.|-..+.
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 889999999999998887655444444799999988764
No 189
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=73.76 E-value=7.3 Score=43.11 Aligned_cols=185 Identities=16% Similarity=0.137 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHH
Q 048793 386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGV 465 (683)
Q Consensus 386 ~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~L 465 (683)
..+|+.++..|..+ .+-+.. ..++..|+..+... ..+++..++-.|..+ .+ .+..-+++++.+
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~----~WEVRHGGLLGLKYL---~D---LL~~Ld~Vv~aV 304 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSG----DWQVQFSGLIALGYL---KE---FVEDKDGLCRKL 304 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCS----CHHHHHHHHHHHHHT---GG---GCCCHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCC----CeeehhhhHHHHHHH---HH---HHHHHHHHHHHH
Confidence 36777777777777 554422 34555566556666 889999999888888 11 111123788888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC--hhHHHHHHHHHHHhcCCcchhHHHHhc
Q 048793 466 IEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP--TSSKRDALVAILNLAGDRETVGRLVER 543 (683)
Q Consensus 466 v~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~a 543 (683)
+.-|+.. +.+++..||.+|.-++ .. ..+ ..++..|.+.|.+-+ ..........|..|+.++.+ .....
T Consensus 305 L~GL~D~-DDDVRAVAAetLiPIA-~p---~~l---~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp 374 (800)
T 3oc3_A 305 VSLLSSP-DEDIKLLSAELLCHFP-IT---DSL---DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPP 374 (800)
T ss_dssp HHHTTCS-SHHHHHHHHHHHTTSC-CS---STH---HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCS
T ss_pred HhhcCCc-ccHHHHHHHHHhhhhc-ch---hhH---HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccCh
Confidence 8888877 7899999999999988 11 111 345555666665432 33455667777777776642 11223
Q ss_pred CchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHH-HHHHHhcCChHHHHHHHHH
Q 048793 544 GIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKK-LCILLREGSDTSRESAAAT 604 (683)
Q Consensus 544 G~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~-Lv~lL~~~s~~~ke~A~~a 604 (683)
..||.|...|... .++...++..|..+.. .. .... ...+|-...+.+++.+..+
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL~-~~------~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLSE-ES------IDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHh-hh------HHHHHHHHHHhCCcHHHHHHHHHH
Confidence 6677777777643 4556667777765541 11 1122 2223456777777777764
No 190
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=71.85 E-value=18 Score=43.44 Aligned_cols=145 Identities=8% Similarity=0.002 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhcccCchhHHHHhcccCcHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSILEANKTRIMETEGALN 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~ 463 (683)
+...++.++++++.++..-.+....-.=..++|.|+.++....+. ....++..++++|+..+.--........ .++.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHHH
Confidence 789999999999999875543322111235688888887642000 0223445667888776532111111111 2444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhh---------hcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGR---------KTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR 534 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~---------~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
.|+..|... ++.+...||+++.+|+.. .+..+.. ..+.+..+...+..-+......+..++..+....
T Consensus 544 ~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 455555444 478999999999999963 2222210 0123333344444345556677777777776653
No 191
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.65 E-value=13 Score=33.31 Aligned_cols=72 Identities=10% Similarity=0.066 Sum_probs=56.3
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|..+++..+-.|..+|-.+..++|... ...+....++.-|+.++....+.+++|+..++.....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f-~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIF-HLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHH-HHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 46778888988999999999998888878877643 3335555678888888877889999998888776654
No 192
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=67.30 E-value=14 Score=33.52 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=60.9
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCC--CCCChhhHHHHHHHHHhc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDT--ASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~--~~~d~~~qe~A~~aL~nL 445 (683)
.+.++..|.+.|.+. ++.++..|+..|-.+.+... .-+..|+....+..|+.++.... ...+..+++.++..+..+
T Consensus 36 ~k~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 455677788999998 99999999999999998853 34566777789999999987421 112789999999998887
Q ss_pred cc
Q 048793 446 SI 447 (683)
Q Consensus 446 s~ 447 (683)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 193
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=66.59 E-value=1e+02 Score=36.08 Aligned_cols=171 Identities=13% Similarity=0.060 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh---cCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHH
Q 048793 473 ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV---KGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIV 549 (683)
Q Consensus 473 ~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL---~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~L 549 (683)
.+...++.++.++..++..-... . ...++.++..+ .++++.++..++++|..++..-....... ..+++.|
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~----~-~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN----Y-SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS----C-CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCch----h-hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHH
Confidence 36888999999999988653211 0 12334444433 33467788999999999886422112222 3678888
Q ss_pred HHHhccCchhHHHHHHHHHHcCCcHHHHHHc-CchH----HHHHHHhc--CChHHHHHHHHHHHHHHhcCCchHHHHHHh
Q 048793 550 AEAMDVLPEESVTILEAVVKRGGLTAIVAAY-NTIK----KLCILLRE--GSDTSRESAAATLVTICRKGGSEMVADIAA 622 (683)
Q Consensus 550 v~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~-g~v~----~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~ 622 (683)
+..|.+ +.....|...|..++.. ..... .-++ .|..++.. .+...++.+..++..+....+.......+
T Consensus 535 ~~~l~~-~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~- 610 (963)
T 2x19_B 535 LHALGN-PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL- 610 (963)
T ss_dssp HHHTTC-GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-
T ss_pred HHHhCC-chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 888864 56666666666665421 11111 2233 33444554 35678888899988888655422223332
Q ss_pred cCCcHHHHHHHh----hcC-CHHHHHHHHHHHHHHHh
Q 048793 623 VPGIERVIWELM----ESG-TARARRKAAALLRILRR 654 (683)
Q Consensus 623 ~~G~~~~L~~Ll----~~~-~~~~k~kA~~lL~~l~~ 654 (683)
..+++++...+ ..+ ++..+.....++..+..
T Consensus 611 -~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 611 -HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp -HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 23455554432 222 67777766666666644
No 194
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=65.01 E-value=11 Score=34.74 Aligned_cols=75 Identities=8% Similarity=-0.015 Sum_probs=59.0
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
.+.++..|.+.|.+. ++.++..|+..|-.+.+... .-+..|+....+..|+.++... .++.+++.++..+..++.
T Consensus 50 ~keA~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~---~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK---AHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHH
Confidence 345667788999998 99999999999999998753 3455666667888888888753 178999999998888763
No 195
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=64.81 E-value=83 Score=32.37 Aligned_cols=191 Identities=14% Similarity=0.101 Sum_probs=126.5
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh--CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA--GAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL 448 (683)
Q Consensus 371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~--G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 448 (683)
+.+..|+..|..- +-+.+..+.....++......+|...++- . =|-++..|-.+.+ ++++--++-..|..+..+
T Consensus 78 dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe--~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 78 GLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYE--SPEIALNCGIMLRECIRH 153 (341)
T ss_dssp SHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGG--STTTHHHHHHHHHHHHTS
T ss_pred CHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhc--cchhHhHHHHHHHHHHHh
Confidence 3455677777766 88899998888888877765544333221 1 1333333322221 445556667778888888
Q ss_pred chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hh-hHHh-hhcccHHHHHHhhcCCChhHHHHHHH
Q 048793 449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HR-KTLG-RKTRVVKGLMDLVKGGPTSSKRDALV 525 (683)
Q Consensus 449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~-~~i~-~~~G~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
+...+.|... +.+..+.+.++.+ +-++...|..++..|-..+. .. .-+. .-...+...-.||.+++--.+..++.
T Consensus 154 e~la~~iL~~-~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 154 EPLAKIILWS-EQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp HHHHHHHHHS-GGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHhcc-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 8888878777 6788888888887 68999999999997755422 11 1111 11235566778899888889999999
Q ss_pred HHHHhcCCcchhHHHHh----cCchHHHHHHhccC-chhHHHHHHHH
Q 048793 526 AILNLAGDRETVGRLVE----RGIVEIVAEAMDVL-PEESVTILEAV 567 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~----aG~V~~Lv~lL~~~-~~~~~~aL~~L 567 (683)
.|..|-.+..|-..|.+ ..-+..++.+|.+. ....-+|..++
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVF 278 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVF 278 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhe
Confidence 99999998888777644 23456667777654 23355555544
No 196
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.79 E-value=18 Score=33.29 Aligned_cols=72 Identities=8% Similarity=0.032 Sum_probs=55.9
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES-GTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|..+++.++-.|+.+|-.+..+++... ...+....++.-|+.++.. ..+.+|+|+..+++.-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F-h~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF-HLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH-HHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH-HHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46678888888999999999998888888877643 4345556788888888775 468999998887777665
No 197
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=64.71 E-value=42 Score=40.21 Aligned_cols=143 Identities=8% Similarity=-0.005 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhcccCchhHHHHhcccCcHH
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSILEANKTRIMETEGALN 463 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~ 463 (683)
+...+..|++++..++..-......-.-..+++.|+.+.....+ ...+.++..+++++...+..-........ .+++
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~ 543 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVIL 543 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHH
Confidence 67889999999998875432221111112344555554332100 00234444577788877643111122222 3677
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh---------hhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG---------RKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~---------~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
.++..|.+. ++.++..|+.+|.+++... +..+. -....+..|..++..-+.+.......++..+..
T Consensus 544 ~ll~~l~~~-~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHTTSS-CHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 788778766 6999999999999999742 22221 012344444455554344444445555555543
No 198
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.12 E-value=8.1 Score=31.52 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=35.2
Q ss_pred CcccccccccCC-----CCceec--CCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793 275 ADFRCPISLELM-----RNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTLA 322 (683)
Q Consensus 275 ~~f~CPis~~~m-----~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~ 322 (683)
..-.|.||++-. -+|.+. .|+-..||.|.+-=..+|+..||.|+.++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 335799997532 122222 566789999998888899999999998875
No 199
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=62.51 E-value=17 Score=32.80 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=55.8
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES------GTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~------~~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|.++++.++-.|..+|-.+..++|.... ..+....++.-|+.++.. ....+|+|+..++..-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh-~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFH-SEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-HHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH-HHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467788889999999999999998888888776543 445566788888888764 367999997777766554
No 200
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.05 E-value=13 Score=34.53 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=60.2
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCC--CCCChhhHHHHHHHHHhcc
Q 048793 370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDT--ASRLPNLQVNAVTTILNLS 446 (683)
Q Consensus 370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~--~~~d~~~qe~A~~aL~nLs 446 (683)
+.++..|.+.|.++ ++.++..|+..|-.+.+... .-+..|+....+..|+.++.... ...+..+++.++..+..++
T Consensus 49 k~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45667788999998 99999999999999998753 34556777788999999986321 1126889999999998886
Q ss_pred c
Q 048793 447 I 447 (683)
Q Consensus 447 ~ 447 (683)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=60.59 E-value=15 Score=44.06 Aligned_cols=99 Identities=6% Similarity=-0.014 Sum_probs=65.2
Q ss_pred ChhhHHHHHHHHHhcccCch-h-HHHHhcccCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCcchhhHHhhhccc
Q 048793 431 LPNLQVNAVTTILNLSILEA-N-KTRIMETEGALNGVIEVLRSGA----TWEAKGNAAATIFSLSGVHAHRKTLGRKTRV 504 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~-~-k~~I~~~~G~I~~Lv~lL~~~~----~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~ 504 (683)
+...+|.++.+++.++.... . -...+. .+++.|+.++.+.. ...++..++++|...+..-....... ...
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~v 541 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV 541 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence 78899999999999986532 2 223333 47889999887421 13344566788876655322222221 245
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793 505 VKGLMDLVKGGPTSSKRDALVAILNLAGD 533 (683)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
+..|+.-+.+.++++...|++++.+||..
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 66666666666788999999999999973
No 202
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=59.75 E-value=24 Score=31.86 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=55.4
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES------GTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~------~~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|.+.++.++-.|..+|-.+..+++..... .+....++.-|+.++.. .++.+|+|...+++....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~-eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD-EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH-HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH-HHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888898999999999999988888888765433 35566788888888753 468999997777666554
No 203
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=57.07 E-value=15 Score=32.87 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=58.2
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 447 (683)
.+.++..|.+.|.+. ++.++..|+..|..+.+.... -...++....+..|+.++... ++.+++.++..+..++.
T Consensus 40 ~k~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~----~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG----HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHH
Confidence 345667788999998 999999999999998887642 244555567778888888766 88999999999988763
No 204
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=56.87 E-value=21 Score=33.12 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=55.9
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES------GTARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~------~~~~~k~kA~~lL~~l~~ 654 (683)
++..|.+.|.++++.++-.|+.+|-.+..+++... ...+....++.-|+.++.. ....+|+|+..+++.-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~F-h~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF-HNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH-HHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH-HHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 36678888989999999999998888888776543 4445666788888888763 358999998888777665
No 205
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=56.65 E-value=1.8e+02 Score=29.85 Aligned_cols=198 Identities=7% Similarity=0.063 Sum_probs=132.9
Q ss_pred HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-h----hhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793 453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-H----RKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527 (683)
Q Consensus 453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~----~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
..+... +.+..|+..|..= +-++|..++.+..+|-.... + ..-+.....++..|+.--. +++..-.+-..|
T Consensus 72 ~ei~~~-dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mL 147 (341)
T 1upk_A 72 QELYNS-GLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIML 147 (341)
T ss_dssp HHHHHH-SHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHHh-CHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHH
Confidence 355666 8899999988876 69999999998888876432 1 1122222333444443333 334444555556
Q ss_pred HHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHH-cCCcHHHHHHc------CchHHHHHHHhcCChHHHH
Q 048793 528 LNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVK-RGGLTAIVAAY------NTIKKLCILLREGSDTSRE 599 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~-l~~~~e~~~~~------g~v~~Lv~lL~~~s~~~ke 599 (683)
.....++.-...+...+.+-.+.+.+... =+.+..|.+++-- +..+...+.+. ......-++|.+++--+|+
T Consensus 148 Recir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 148 RECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 66666666666777888888888877633 3567777777743 44555554433 2245566778888999999
Q ss_pred HHHHHHHHHHhcCCc-hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793 600 SAAATLVTICRKGGS-EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR 654 (683)
Q Consensus 600 ~A~~aL~~L~~~~~~-~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~ 654 (683)
.++..|..|-..-.+ .+....+....-+.++..|+++.+..++-.|=-+.+.+--
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 999999998764333 3444555556678889999999999999988888887754
No 206
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=55.88 E-value=6.6 Score=33.01 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=27.1
Q ss_pred CcccccccccCCCCceecCCccccchhhHHHHHhcC
Q 048793 275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG 310 (683)
Q Consensus 275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g 310 (683)
..++||+|++.+....++++ + .-|..|+.|+..+
T Consensus 62 ~~~~cP~~~~~l~~~~L~pn-~-~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 62 NSPTDPFNRQTLTESMLEPV-P-ELKEQIQAWMREK 95 (100)
T ss_dssp SCSBCSSSCCBCCTTSSEEC-H-HHHHHHHHHHHTT
T ss_pred cCCCCCCCCCCCChhhceEC-H-HHHHHHHHHHHHh
Confidence 36799999999988777764 3 4488999999863
No 207
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=54.58 E-value=1.4e+02 Score=29.18 Aligned_cols=139 Identities=11% Similarity=0.023 Sum_probs=86.4
Q ss_pred HHHHh-ccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhccc--Cchh
Q 048793 376 LINKL-ATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSI--LEAN 451 (683)
Q Consensus 376 Lv~~L-~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~--~~~~ 451 (683)
+...| .+. ..++|.-|+..|..+ .. . ...++.+.. +-... +-.+++.+..++..++. +.+
T Consensus 75 la~~L~~~~-~deVR~~Av~lLg~~-~~---~------~~~L~~ir~~va~D~----~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 75 LAFLAYQSD-VYQVRMYAVFLFGYL-SK---D------KEILIFMRDEVSKDN----NWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHTCS-SHHHHHHHHHHHHHT-TT---S------HHHHHHHHHTGGGCS----CHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHhCc-chHHHHHHHHHHHhc-cC---c------HHHHHHHHHHhCCCC----CccHHHHHHHHHHHHHHhcCHH-
Confidence 34444 444 568888888877665 21 1 235666666 33344 77999999999888763 211
Q ss_pred HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793 452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA 531 (683)
Q Consensus 452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
..++.+...+.+. +..+|..|...+.--+..... .....-+++.|-.+..+++.-+++...++|..++
T Consensus 139 --------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 139 --------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp --------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 2567777788877 799999888877543322111 1110123444445555556668999999999999
Q ss_pred CCcch-hHHHHh
Q 048793 532 GDRET-VGRLVE 542 (683)
Q Consensus 532 ~~~~n-~~~iv~ 542 (683)
..+.. ...+++
T Consensus 207 K~~Pd~V~~~~~ 218 (240)
T 3l9t_A 207 KKFPDLVKIELK 218 (240)
T ss_dssp TTCHHHHHHHHH
T ss_pred hhCHHHHHHHHH
Confidence 96543 344443
No 208
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=54.45 E-value=29 Score=31.36 Aligned_cols=78 Identities=10% Similarity=0.136 Sum_probs=59.7
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCC--CCCChhhHHHHHHHHHhc
Q 048793 369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDT--ASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~--~~~d~~~qe~A~~aL~nL 445 (683)
.+.++..|.+.|.+. ++.++..|+..|-.+.+.... -...|+...++..|++++.... ...+..+++.++..+..+
T Consensus 46 pk~a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 46 PPLATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 345667788999988 999999999999999887643 2455666788888999997421 012788999999999888
Q ss_pred cc
Q 048793 446 SI 447 (683)
Q Consensus 446 s~ 447 (683)
+.
T Consensus 125 ~~ 126 (149)
T 3g2s_A 125 TV 126 (149)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 209
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=53.30 E-value=9.1 Score=37.77 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=10.3
Q ss_pred HHHHhccCCCHHHHHHHHH
Q 048793 376 LINKLATSQSMEAANDAVY 394 (683)
Q Consensus 376 Lv~~L~s~~~~~~~~~A~~ 394 (683)
|..++... ++.++..++.
T Consensus 79 l~~L~~D~-~~~VR~~aA~ 96 (244)
T 1lrv_A 79 LTPLIRDS-DEVVRRAVAY 96 (244)
T ss_dssp GGGGTTCS-SHHHHHHHHT
T ss_pred HHHHccCc-CHHHHHHHHH
Confidence 33444555 6677666664
No 210
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=52.12 E-value=3 Score=27.85 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=11.9
Q ss_pred cccccccccCCCCce
Q 048793 276 DFRCPISLELMRNPV 290 (683)
Q Consensus 276 ~f~CPis~~~m~dPv 290 (683)
-|+||+|+.-+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 489999998777764
No 211
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.59 E-value=27 Score=33.84 Aligned_cols=72 Identities=10% Similarity=0.137 Sum_probs=55.7
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|...++.++-.|+.+|-.+..+.+.....+ +....++..|..++... .+.+|+|+..+++....
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e-ias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE-VANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH-HSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh-hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 36678888889999999999999888888877654333 55566777788777654 67899998888887765
No 212
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.26 E-value=40 Score=32.62 Aligned_cols=72 Identities=7% Similarity=0.141 Sum_probs=57.6
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC--chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL--EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~--~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
.++..|.+-|.+. ++.+|..|+.+|-.+..+ ......|... .++..|+.+++...+.++++.+..+|...+.
T Consensus 45 ~a~ral~krl~~~----n~~v~l~aL~LLe~~vkNcG~~f~~eias~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDK----NPHVALYALEVMESVVKNCGQTVHDEVANK-QTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHHCHHHHHHHSSH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHhcchHHHHhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4566788888888 999999999988888765 3446677766 7899999999876578999999999987764
No 213
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=49.56 E-value=1.9e+02 Score=34.33 Aligned_cols=197 Identities=10% Similarity=0.036 Sum_probs=101.0
Q ss_pred ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC------cchhhHHhhhccc
Q 048793 431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV------HAHRKTLGRKTRV 504 (683)
Q Consensus 431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~------~~~~~~i~~~~G~ 504 (683)
+...+..|-..|.++- +.+++...+..+|.++.+..+|..|+.+|.+.... ++.+..|-. ..
T Consensus 29 ~~~~r~~Ae~~L~~~~----------~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~--~l 96 (1049)
T 3m1i_C 29 SGVQQKQAQEILTKFQ----------DNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN--FV 96 (1049)
T ss_dssp CHHHHHHHHHHHHHHH----------HSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH--HH
T ss_pred ChHHHHHHHHHHHHHH----------hCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH--HH
Confidence 4445555555554432 23467777888887665789999999999987642 233444322 34
Q ss_pred HHHHHHhhcCC-----ChhHHHHHHHHHHHhcCC--cchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCc----
Q 048793 505 VKGLMDLVKGG-----PTSSKRDALVAILNLAGD--RETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGL---- 573 (683)
Q Consensus 505 i~~Lv~lL~~~-----~~~~~~~A~~aL~nLs~~--~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~---- 573 (683)
+..+...-.++ +..++...+.++..+... ++.- -+.++.|++.+..+....+.++.+|..++..
T Consensus 97 l~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~~ 171 (1049)
T 3m1i_C 97 VGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDF 171 (1049)
T ss_dssp HHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHh
Confidence 44444332111 234566666677666553 2221 3567788888864333345555555443310
Q ss_pred ------HH----HHHHc-CchHH----HHHHHhc-CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHH-Hhhc
Q 048793 574 ------TA----IVAAY-NTIKK----LCILLRE-GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWE-LMES 636 (683)
Q Consensus 574 ------~e----~~~~~-g~v~~----Lv~lL~~-~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~-Ll~~ 636 (683)
.. ..... ..++. +..++.. .++..+..|..++.+....-+.. .+.+..+++.+.. ++.
T Consensus 172 ~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~----~~~~~~ll~~l~~~~l~- 246 (1049)
T 3m1i_C 172 SAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR----YIYETNILELLSTKFMT- 246 (1049)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH----HHHSSSHHHHHHTHHHH-
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH----HHhhhhHHHHHHHHhCC-
Confidence 00 00000 11232 3334433 45677888888877655433321 1223455555542 221
Q ss_pred CCHHHHHHHHHHHH
Q 048793 637 GTARARRKAAALLR 650 (683)
Q Consensus 637 ~~~~~k~kA~~lL~ 650 (683)
++.++..|...|.
T Consensus 247 -~~~~~~~a~~~L~ 259 (1049)
T 3m1i_C 247 -SPDTRAITLKCLT 259 (1049)
T ss_dssp -SHHHHHHHHHHHH
T ss_pred -CHhHHHHHHHHHH
Confidence 4555555544433
No 214
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=47.47 E-value=1.4e+02 Score=25.79 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=66.6
Q ss_pred hhhhcHHHHHHHHhhhhHHHHHHHhcCCCCC---------ChhHhhhHHHHHHHHHHHHHHHHHhcccchH--------H
Q 048793 50 LLQRSCLSIIRKVKLLSLFFEELLANQVSFF---------SPPTVLCFEEMYIVLQRMKTLIEDCYNGSKM--------W 112 (683)
Q Consensus 50 ~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~---------~~~~~~~l~~L~~~l~~a~~ll~~c~~~skl--------y 112 (683)
+.++++.+-+.......-++........+.. ...+..-+...+..+.+....+.+|....++ |
T Consensus 22 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 101 (162)
T 3rkv_A 22 FVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALF 101 (162)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHH
Confidence 4456666666555555555554443322211 1123333444555566666666666554443 7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHhhh
Q 048793 113 LLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKR 163 (683)
Q Consensus 113 l~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~s~ev~e~v~~~~~q~~~~ 163 (683)
.+..+..-..+|+++...+.+++..-|-+ .+.+...+..++....+.
T Consensus 102 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 102 RRAKARIAAWKLDEAEEDLKLLLRNHPAA----ASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHH
Confidence 78888888899999999999999998853 235666666666655444
No 215
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=47.29 E-value=4.7 Score=25.62 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=13.4
Q ss_pred CCcccccccccCCCCce
Q 048793 274 PADFRCPISLELMRNPV 290 (683)
Q Consensus 274 p~~f~CPis~~~m~dPv 290 (683)
|..|.||+|+..|.|+-
T Consensus 1 ~~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCCEECTTSSCEESSHH
T ss_pred CCcccCccccccCcChH
Confidence 35688999998888874
No 216
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=47.03 E-value=9.1 Score=37.77 Aligned_cols=20 Identities=10% Similarity=-0.084 Sum_probs=11.7
Q ss_pred HHHHHhccCCCHHHHHHHHHH
Q 048793 375 FLINKLATSQSMEAANDAVYE 395 (683)
Q Consensus 375 ~Lv~~L~s~~~~~~~~~A~~~ 395 (683)
.|..++... ++.++..++..
T Consensus 102 ~L~~ll~D~-d~~VR~~aA~~ 121 (244)
T 1lrv_A 102 QLSALMFDE-DREVRITVADR 121 (244)
T ss_dssp GGGGTTTCS-CHHHHHHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHh
Confidence 344455555 67777666653
No 217
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.96 E-value=32 Score=33.06 Aligned_cols=72 Identities=7% Similarity=0.059 Sum_probs=56.4
Q ss_pred CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC--chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793 414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL--EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490 (683)
Q Consensus 414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~--~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~ 490 (683)
.++..|.+-|.+. ++.+|..|+.+|-.+..+ ......|... ..+..|+.++.+..+.++++.+...+..-+.
T Consensus 42 ~a~r~l~krl~~~----n~~~~l~aL~Lle~~vkNcG~~f~~eva~~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSP----NPHSSCYSLLVLESIVKNCGAPVHEEVFTK-ENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHSHHHHHHHHSSH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhccCHHHHHHHHhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4556677788888 999999999988888765 3445677776 7999999999866568899888888876654
No 218
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=43.49 E-value=11 Score=31.39 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=25.5
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHhc
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIES 309 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~ 309 (683)
..+||+|.+.+....++++ + .-|..|+.|+..
T Consensus 57 ~~~cP~~~~~l~~~~L~pn-~-~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRPN-T-ELKEKIQRWLAE 88 (98)
T ss_dssp SCBCTTTCSBCCTTTSEEC-H-HHHHHHHHHHHH
T ss_pred CCCCCCCCCCCChhhceEc-H-HHHHHHHHHHHH
Confidence 5689999999987766664 3 458899999976
No 219
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.15 E-value=41 Score=32.31 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=54.7
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|...++.++-.|+.+|-.+..+.+..... .+....++..|+.++.+. ...+|+|+..+++.-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~-eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHE-EVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH-HHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHH-HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3567778888899999999999999888887654333 354556888888887654 58899998877777664
No 220
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=38.86 E-value=1.1e+02 Score=32.62 Aligned_cols=132 Identities=17% Similarity=0.117 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhCcHHHHH-HhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHH
Q 048793 389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLA-RHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIE 467 (683)
Q Consensus 389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv-~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~ 467 (683)
+.-++..||.+..+...+ +.+..++ ..+.+. .+..+-.++.++.||-.+......++..+.....+++
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~----~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~ 311 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK----NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFE 311 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC----ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHH
Confidence 667888888887766532 2233333 233344 7888999999999998888754444443233555666
Q ss_pred HHhcC-------CCHHHHHHHHHHHHHhhcCcch-hhHHhhhcccHHHHHHhhc---------CCChhHHHHHHHHHHHh
Q 048793 468 VLRSG-------ATWEAKGNAAATIFSLSGVHAH-RKTLGRKTRVVKGLMDLVK---------GGPTSSKRDALVAILNL 530 (683)
Q Consensus 468 lL~~~-------~~~~~~~~Aa~~L~~Ls~~~~~-~~~i~~~~G~i~~Lv~lL~---------~~~~~~~~~A~~aL~nL 530 (683)
.+... .+...+..++.+++|++..-.. +.. ......+++.+. ..++++...++.||.+|
T Consensus 312 ~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtL 387 (425)
T 3pst_A 312 TIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 387 (425)
T ss_dssp HSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHH
Confidence 55311 1346778888888999874221 111 123445555554 24677888899999998
Q ss_pred cCCcc
Q 048793 531 AGDRE 535 (683)
Q Consensus 531 s~~~~ 535 (683)
....+
T Consensus 388 v~~~~ 392 (425)
T 3pst_A 388 ATVEP 392 (425)
T ss_dssp HHHCH
T ss_pred HhcCH
Confidence 86433
No 221
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=38.61 E-value=51 Score=32.46 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhcccCch-hHHHHhcccCcHHHH
Q 048793 388 AANDAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSILEA-NKTRIMETEGALNGV 465 (683)
Q Consensus 388 ~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~k~~I~~~~G~I~~L 465 (683)
.+.-++..+|.+..+...+ +.+..++. .+.+. ++..+--++.++.|+-.++. .+..+... .....+
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~----~~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i 137 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK----NITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSI 137 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTH
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC----chhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHH
Confidence 4566788888777766532 33333332 23333 77889999999999988888 56666543 334445
Q ss_pred HHHHhcC-------CCHHHHHHHHHHHHHhhcCcch-hhHHhhhcccHHHHHHhhcC---------CChhHHHHHHHHHH
Q 048793 466 IEVLRSG-------ATWEAKGNAAATIFSLSGVHAH-RKTLGRKTRVVKGLMDLVKG---------GPTSSKRDALVAIL 528 (683)
Q Consensus 466 v~lL~~~-------~~~~~~~~Aa~~L~~Ls~~~~~-~~~i~~~~G~i~~Lv~lL~~---------~~~~~~~~A~~aL~ 528 (683)
+..+... .+...+..++.+++|++..-.. +.. ......+++.+.. .++++...++.||.
T Consensus 138 ~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~----~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlG 213 (253)
T 3gae_A 138 FETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYG 213 (253)
T ss_dssp HHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC----TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch----HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 5544211 1356777888889999874221 111 1233445554442 25678888889999
Q ss_pred HhcCCcchh
Q 048793 529 NLAGDRETV 537 (683)
Q Consensus 529 nLs~~~~n~ 537 (683)
+|...++..
T Consensus 214 tL~~~~~~~ 222 (253)
T 3gae_A 214 NLATVEPTL 222 (253)
T ss_dssp HHHHHSGGG
T ss_pred HHHhCcHHH
Confidence 987644433
No 222
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.15 E-value=8.3 Score=32.01 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=24.1
Q ss_pred ccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 277 FRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 277 f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
..||.|.+.|. + ..|+.+|-.|=+.+ .. ...||.|+++|..
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f-~~-~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFI-EM-KALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEE-EE-EEECTTTCSBCEE
T ss_pred ccCccCCCcce-e---cCCEEECccccchh-hc-cccCcchhhHHHH
Confidence 68999998774 2 12333355441111 00 3479999998753
No 223
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.33 E-value=67 Score=29.10 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=57.0
Q ss_pred hhhhHHHHHHHhcc-CCCHHHHHHHHHHHHhhhccC-chhHHHHHHhCcHHH-HHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793 369 TKMTASFLINKLAT-SQSMEAANDAVYELRSLSKTD-SDSRACIAEAGAIAL-LARHLGPDTASRLPNLQVNAVTTILNL 445 (683)
Q Consensus 369 ~~~~i~~Lv~~L~s-~~~~~~~~~A~~~L~~La~~~-~~nr~~i~~~G~Ip~-Lv~lL~s~~~~~d~~~qe~A~~aL~nL 445 (683)
.+.++..|.+.|++ . ++.++..|+..|-.+.+.. ..-+..++....+.. |+.++.... ..+..+++.++..+..+
T Consensus 51 ~k~a~ral~krl~~~~-n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~-~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 51 PKDALRAVKKRIVGNK-NFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKN-NPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHHH
Confidence 34566778899974 6 8999999999999999876 334556666778887 888885320 11458999999888887
Q ss_pred cc
Q 048793 446 SI 447 (683)
Q Consensus 446 s~ 447 (683)
+.
T Consensus 129 ~~ 130 (157)
T 1elk_A 129 AD 130 (157)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 224
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=37.20 E-value=12 Score=30.20 Aligned_cols=32 Identities=9% Similarity=0.301 Sum_probs=25.1
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHhc
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIES 309 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~ 309 (683)
.++||+|++.+....++++ + .-|..|+.|...
T Consensus 48 ~~~cP~~~~~l~~~~l~pn-~-~L~~~i~~~~~~ 79 (85)
T 2kr4_A 48 SPTDPFNRQMLTESMLEPV-P-ELKEQIQAWMRE 79 (85)
T ss_dssp CSBCTTTCCBCCGGGCEEC-H-HHHHHHHHHHHH
T ss_pred CCCCCCCcCCCChHhcchH-H-HHHHHHHHHHHH
Confidence 4689999999987766664 3 348899999875
No 225
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=36.81 E-value=4.2e+02 Score=31.59 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=82.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCC---CCCCChhhHHHHHHHHHhcccCc
Q 048793 373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD---TASRLPNLQVNAVTTILNLSILE 449 (683)
Q Consensus 373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~---~~~~d~~~qe~A~~aL~nLs~~~ 449 (683)
...|.+.+... +.+.+.-++.+|.|+... +.++.|.+++... ..+....++..|+.+|.+++...
T Consensus 442 ~~~l~~~~~~~-~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 442 HDLLSQSSDRA-KEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD 509 (1056)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHhcC-ChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence 34455666777 888888999999987542 4678888887531 11113568888999999987532
Q ss_pred hhHHHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-CChhHHHHHHHHH
Q 048793 450 ANKTRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-GPTSSKRDALVAI 527 (683)
Q Consensus 450 ~~k~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL 527 (683)
. .. +-+.+..+.. ...+.++|..|+.+|+...-. ...+..++..+.. .+..+..-....|
T Consensus 510 p--~~------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~----------~~~l~~ia~~l~~E~~~QV~sfv~S~l 571 (1056)
T 1lsh_A 510 P--RK------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPS----------VALVSMVAVRLRREPNLQVASFVYSQM 571 (1056)
T ss_dssp H--HH------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC----------HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred h--HH------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC----------HHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 1 11 2234666664 233689999888888754322 2234445555544 3455666677777
Q ss_pred HHhcCCc
Q 048793 528 LNLAGDR 534 (683)
Q Consensus 528 ~nLs~~~ 534 (683)
.+|+...
T Consensus 572 ~sla~s~ 578 (1056)
T 1lsh_A 572 RSLSRSS 578 (1056)
T ss_dssp HHHTTCC
T ss_pred HHHHhcC
Confidence 7776654
No 226
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=36.67 E-value=60 Score=26.89 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=41.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHhhh
Q 048793 112 WLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKR 163 (683)
Q Consensus 112 yl~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~s~ev~e~v~~~~~q~~~~ 163 (683)
|.+..+..-..+++++...+.+++..-|-...+...++...+..+..+.|..
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777889999999999999887766667788888888887776655
No 227
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.90 E-value=84 Score=28.43 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=51.7
Q ss_pred chHHHHHHHh-cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHH-HHHHhhc-C--CHHHHHHHHHHHHHHHh
Q 048793 582 TIKKLCILLR-EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERV-IWELMES-G--TARARRKAAALLRILRR 654 (683)
Q Consensus 582 ~v~~Lv~lL~-~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~-L~~Ll~~-~--~~~~k~kA~~lL~~l~~ 654 (683)
++.+|.+.|. +.++.++-.|..+|-.+..+++... ...+....++.- |+.++.. . ...+|+|+..++..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f-h~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF-HVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH-HHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH-HHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3567778887 4788999999999888888887654 333555567776 7777642 2 35899997777766555
No 228
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.26 E-value=87 Score=32.61 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHH
Q 048793 389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIE 467 (683)
Q Consensus 389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~ 467 (683)
+.-++..||.+..+...+ +.+..++. .+.+. .+..+-.++.++.||-.+......++..+.....+++
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~----~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~ 248 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK----NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFE 248 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHH
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCC----ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHH
Confidence 566888888877766522 33333332 33344 7788999999999998887744444432122334444
Q ss_pred HHh----cC---CCHHHHHHHHHHHHHhhcCcch-hhHHhhhcccHHHHHHhhc---------CCChhHHHHHHHHHHHh
Q 048793 468 VLR----SG---ATWEAKGNAAATIFSLSGVHAH-RKTLGRKTRVVKGLMDLVK---------GGPTSSKRDALVAILNL 530 (683)
Q Consensus 468 lL~----~~---~~~~~~~~Aa~~L~~Ls~~~~~-~~~i~~~~G~i~~Lv~lL~---------~~~~~~~~~A~~aL~nL 530 (683)
.+. +. .+...+..++.+++|++..-.. +.. ......+++.+. ..++++...++.||.+|
T Consensus 249 ~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL 324 (362)
T 3l3f_X 249 TIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 324 (362)
T ss_dssp HSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHH
Confidence 442 11 1346777888888999874221 111 123445555554 24677888899999998
Q ss_pred cCCc
Q 048793 531 AGDR 534 (683)
Q Consensus 531 s~~~ 534 (683)
....
T Consensus 325 ~~~~ 328 (362)
T 3l3f_X 325 ATVE 328 (362)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8633
No 229
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=34.17 E-value=12 Score=26.66 Aligned_cols=13 Identities=31% Similarity=0.818 Sum_probs=11.5
Q ss_pred CCCCccccccccc
Q 048793 272 NVPADFRCPISLE 284 (683)
Q Consensus 272 ~~p~~f~CPis~~ 284 (683)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5899999999975
No 230
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=32.18 E-value=7.5e+02 Score=29.84 Aligned_cols=127 Identities=8% Similarity=0.003 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC--CCCCCCChhhHHHHHHHHHhcc------cCchhHHHHh
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG--PDTASRLPNLQVNAVTTILNLS------ILEANKTRIM 456 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~--s~~~~~d~~~qe~A~~aL~nLs------~~~~~k~~I~ 456 (683)
+.+.+..|-..|..+-+.. ++.+.+...|. +. +..++..|+..|.|.. ..++.|..|-
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~----~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir 91 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQ----VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK 91 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTS----CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCC----CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 6677888888887764432 23334444343 33 7889999998888863 2344555554
Q ss_pred cccCcHHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793 457 ETEGALNGVIEVLRSG--ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG 532 (683)
Q Consensus 457 ~~~G~I~~Lv~lL~~~--~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
.. .+..+...-..+ ....++...+.++..++..+-. ..=.+.++.|+.++.+ ++..+..++.+|..|+.
T Consensus 92 ~~--ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 92 NS--VMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HH--HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 33 333332211000 2467777788888887765321 1125788889998876 45567778888888864
No 231
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=30.26 E-value=4.4e+02 Score=26.60 Aligned_cols=146 Identities=9% Similarity=0.009 Sum_probs=92.0
Q ss_pred HHHHHHHHhcC--C---CHHHHHHHHHHHHHhhcCcchhhHHhh-hcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcc
Q 048793 462 LNGVIEVLRSG--A---TWEAKGNAAATIFSLSGVHAHRKTLGR-KTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRE 535 (683)
Q Consensus 462 I~~Lv~lL~~~--~---~~~~~~~Aa~~L~~Ls~~~~~~~~i~~-~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
...+..++++| . +.+....|...|..+|-+-++-..|.. ....+..|+ ......+..++.|.++|..--.+..
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 44455666666 1 244567888899999988888888876 333444444 2233345678889988887666544
Q ss_pred -hhHHHHh--cCchHHHHHHhcc-------Cc-hhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcC--ChHHHHHHH
Q 048793 536 -TVGRLVE--RGIVEIVAEAMDV-------LP-EESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREG--SDTSRESAA 602 (683)
Q Consensus 536 -n~~~iv~--aG~V~~Lv~lL~~-------~~-~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~--s~~~ke~A~ 602 (683)
....+.+ -..|..+..-|.. .. -..-+.|++|--+..++... ...+...|.+++... .+.+|..+.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl 181 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-PIYSTVVLQNVYERNNKDKQLQIKVL 181 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC---CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-hhccHHHHHHHHccCCCCHHHHHHHH
Confidence 3333333 2455555544431 11 23777888888777664322 234678888888777 889999998
Q ss_pred HHHHHHH
Q 048793 603 ATLVTIC 609 (683)
Q Consensus 603 ~aL~~L~ 609 (683)
.++..+-
T Consensus 182 ~li~d~f 188 (315)
T 3qml_C 182 ELISKIL 188 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8877766
No 232
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=30.11 E-value=16 Score=27.08 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=12.1
Q ss_pred CCCCcccccccccC
Q 048793 272 NVPADFRCPISLEL 285 (683)
Q Consensus 272 ~~p~~f~CPis~~~ 285 (683)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 78999999999753
No 233
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=29.86 E-value=3.2e+02 Score=24.83 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=80.9
Q ss_pred HHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhcccchHHHHHhh--HHHHHHHHHHHHHHHH
Q 048793 56 LSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQI--ETAANNFHELTIDLST 133 (683)
Q Consensus 56 ~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~sklyl~~~~--~~~~~~~~~~~~~l~~ 133 (683)
++..++..+|..-++||...+.. |.--..|+.-+..|..+..+.+.+.... -++.. ..+...+..+.+.+..
T Consensus 8 ~e~~~~~d~L~~ql~El~~~~l~---~gE~eeLe~e~~rL~nae~l~~~~~~a~---~~L~~~e~~~~~~L~~a~~~L~~ 81 (175)
T 4abx_A 8 RERARQIDLLAFQVQEISEVSPD---PGEEEGLNTELSRLSNLHTIAQAAAGGV---ELLSDGDLNAAGLIGEAVRALNA 81 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC---TTHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC---CChHHHHHHHHHHHHCHHHHHHHHHHHH---HHHhCCcchHHHHHHHHHHHHHH
Confidence 35668889999999999887753 2336678888888888888888876543 22222 2466666666666666
Q ss_pred HHhcCC-Cccc-cchhhHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHhhhhhcCCCCHHHHHHHHhhcCCCCHH
Q 048793 134 LLDIMP-LQEL-RLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSS 211 (683)
Q Consensus 134 ~l~~~p-~~~~-~~s~ev~e~v~~~~~q~~~~~~~~~~d~~~~~l~~~v~~~l~~~~~~~~~d~~~l~~~~~~l~~~~~~ 211 (683)
+-+.-| +..+ +.-.++.-+++.+...+.++......|| +++.. |.+ + ...|..+.+|-| .++.
T Consensus 82 l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP--~rL~~-ie~---R--------L~~l~~L~RKyg-~~~e 146 (175)
T 4abx_A 82 GAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADP--EALDR-VEA---R--------LSALSKLKNKYG-PTLE 146 (175)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH--HHHHH-HHH---H--------HHHHHHHHHHHC-SSHH
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHH-HHH---H--------HHHHHHHHHHcC-CCHH
Confidence 443322 1100 1112333444444444444433333333 32221 111 1 125666777777 5666
Q ss_pred HHHHHHHHHHHHH
Q 048793 212 ACKEEIESLEEEI 224 (683)
Q Consensus 212 ~~~~E~~~l~~e~ 224 (683)
++..=...+++++
T Consensus 147 ell~~~~~~~~eL 159 (175)
T 4abx_A 147 DVVEFGAQAAEEL 159 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6544434444443
No 234
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.19 E-value=19 Score=26.42 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=12.1
Q ss_pred CCCCcccccccccC
Q 048793 272 NVPADFRCPISLEL 285 (683)
Q Consensus 272 ~~p~~f~CPis~~~ 285 (683)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 68999999999753
No 235
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=28.50 E-value=36 Score=26.40 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=24.3
Q ss_pred cccccccccCCCCceecCCccccchhhHHHHHhc
Q 048793 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIES 309 (683)
Q Consensus 276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~ 309 (683)
...||+|...+....+.++ + .-+..|++|..+
T Consensus 43 ~~~CP~C~~~~~~~~l~~n-~-~l~~~i~~~~~~ 74 (78)
T 1t1h_A 43 HKTCPKSQETLLHAGLTPN-Y-VLKSLIALWCES 74 (78)
T ss_dssp CCBCTTTCCBCSSCCCEEC-T-TTHHHHHHHHHH
T ss_pred cCCCCCCcCCCChhhCccC-H-HHHHHHHHHHHH
Confidence 6789999998876655553 3 348899999976
No 236
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=27.79 E-value=39 Score=27.85 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=38.6
Q ss_pred CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT 324 (683)
Q Consensus 272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~ 324 (683)
..-+-+-|--|-.-.+. .+..+.|-+|+.|+..-+.. ...||+|+.+|...
T Consensus 24 s~~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CCSCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred cccCcccChhhccccCC-eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 34455788888766554 45577899999999887764 67899999998654
No 237
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.72 E-value=32 Score=26.11 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=28.6
Q ss_pred hhhHHHHHHHhcCCCCCChh---HhhhHHHHHHHHHHHHHHHHHhc
Q 048793 64 LLSLFFEELLANQVSFFSPP---TVLCFEEMYIVLQRMKTLIEDCY 106 (683)
Q Consensus 64 lL~~lleEl~~~~~~~~~~~---~~~~l~~L~~~l~~a~~ll~~c~ 106 (683)
-|..++||+... +.|+ ...+.+-|..-+..|+.|+..|.
T Consensus 15 ~LL~VIeEmgkd----IrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKE----IRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTT----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc----cchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 355678888521 1221 26688999999999999999996
No 238
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.40 E-value=21 Score=26.10 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q 048793 272 NVPADFRCPISLE 284 (683)
Q Consensus 272 ~~p~~f~CPis~~ 284 (683)
.+|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999975
No 239
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.19 E-value=23 Score=28.48 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=12.2
Q ss_pred CCCCcccccccccC
Q 048793 272 NVPADFRCPISLEL 285 (683)
Q Consensus 272 ~~p~~f~CPis~~~ 285 (683)
++|+++.||+|+--
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 68999999999764
No 240
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.45 E-value=22 Score=26.35 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=12.0
Q ss_pred CCCCcccccccccC
Q 048793 272 NVPADFRCPISLEL 285 (683)
Q Consensus 272 ~~p~~f~CPis~~~ 285 (683)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 68999999999753
No 241
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.57 E-value=3.5e+02 Score=23.15 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=36.1
Q ss_pred chhhhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhcccchHHH
Q 048793 49 FLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWL 113 (683)
Q Consensus 49 ~~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~sklyl 113 (683)
...|+-+.+..||+.+ ||+-|++.+ +++.+...|-+|-.+|+. .++..+.+++.
T Consensus 32 ~~~k~~~~D~~KRL~~---LfdkLn~~~---Ls~~v~~~L~~l~~al~~-----~dy~~A~~ih~ 85 (118)
T 2yru_A 32 HTKKQVCDDISRRLAL---LREQWAGGK---LSIPVKKRMALLVQELLH-----HQWDAADDIHR 85 (118)
T ss_dssp TSCHHHHHHHHHHHHH---HHHHHHHTC---SCHHHHHHHHHHHHHHHH-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhcCC---CCHHHHHHHHHHHHHHHc-----CCHHHHHHHHH
Confidence 3455668899977665 588888766 467777778888777764 34445554443
No 242
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.37 E-value=2.5e+02 Score=27.35 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC----CChhhHHHHHHHHHhcccCchh-HHHHhccc
Q 048793 385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS----RLPNLQVNAVTTILNLSILEAN-KTRIMETE 459 (683)
Q Consensus 385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~----~d~~~qe~A~~aL~nLs~~~~~-k~~I~~~~ 459 (683)
++..+.-+++.+.|+-.+....|..+........++..+.+...+ .+..++..+++.++|+|..-.+ +. ..
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~- 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DL- 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CT-
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hH-
Confidence 677888889999998776653566665544455566555332111 1456888889999999853111 11 11
Q ss_pred CcHHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcCcchhhHHh
Q 048793 460 GALNGVIEVLRS--------GATWEAKGNAAATIFSLSGVHAHRKTLG 499 (683)
Q Consensus 460 G~I~~Lv~lL~~--------~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~ 499 (683)
.....+++.+.. ..+.|+...+.-+|.+|...+.....+.
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a 226 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFA 226 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCT
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHh
Confidence 344556666552 1257888888888888886555444433
No 243
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=22.69 E-value=3.1e+02 Score=26.89 Aligned_cols=83 Identities=7% Similarity=0.105 Sum_probs=58.5
Q ss_pred hcHHHHHHHHhhhhHHHHHHHhc---CCCCCChhHhhhHHHHHHHHHHHHHHHHHhc----ccchHHHH-----------
Q 048793 53 RSCLSIIRKVKLLSLFFEELLAN---QVSFFSPPTVLCFEEMYIVLQRMKTLIEDCY----NGSKMWLL----------- 114 (683)
Q Consensus 53 ~~~~~l~r~i~lL~~lleEl~~~---~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~----~~sklyl~----------- 114 (683)
.|..+|...++-+++-+.+|-.. +...+-+. ..+..|..|...|+.|. .++|.|+-
T Consensus 152 ~~~~el~~~~~~f~~~~~~L~~~~~~Rq~eL~~~------~~r~~l~~Ar~~Lk~~~p~L~ta~k~~lrh~~~~~~~~~~ 225 (258)
T 3rf3_A 152 ETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQ------EHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEE 225 (258)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHH
Confidence 67788998999999999888421 11012222 34677788888888877 56777764
Q ss_pred --HhhHHHHHHHHHHHHHHHHHHhcCCCc
Q 048793 115 --MQIETAANNFHELTIDLSTLLDIMPLQ 141 (683)
Q Consensus 115 --~~~~~~~~~~~~~~~~l~~~l~~~p~~ 141 (683)
-..+.+..++++...+|.+++..-.++
T Consensus 226 a~~nRd~v~~~m~~al~~I~~vlq~~~~~ 254 (258)
T 3rf3_A 226 ALKNRNFTVEKMSAEINEIIRVLQLTSWD 254 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 234777888888888888888876554
No 244
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.61 E-value=25 Score=27.42 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=12.0
Q ss_pred CCCCcccccccccC
Q 048793 272 NVPADFRCPISLEL 285 (683)
Q Consensus 272 ~~p~~f~CPis~~~ 285 (683)
++|+++.||+|+--
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 68999999999753
No 245
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=22.08 E-value=42 Score=25.83 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=27.8
Q ss_pred hhhHHHHHHHh-cCCCCCChhHhhhHHHHHHHHHHHHHHHHHhc
Q 048793 64 LLSLFFEELLA-NQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCY 106 (683)
Q Consensus 64 lL~~lleEl~~-~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~ 106 (683)
-|..++||+.. .+.. +- -...+.+.|..-+..|+.|+..|.
T Consensus 19 ~LL~vIeEmgkdirPT-ya-gsks~~ERLkRgI~hAr~LVRECl 60 (69)
T 2m1l_A 19 DLLSVIEEMGKEIRPT-YA-GSKSAMERLKRGIIHARALVRECL 60 (69)
T ss_dssp HHHHHHHHHHTTHHHH-HT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccch-hh-cCcchHHHHHHHHHHHHHHHHHHH
Confidence 34456788852 2110 11 125688999999999999999996
No 246
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=21.70 E-value=1.2e+02 Score=25.20 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=50.9
Q ss_pred hhhhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHH-HHHHHHHHHHHHHHhcccchHHHHHhhHHHHHHHHHHH
Q 048793 50 LLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEE-MYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELT 128 (683)
Q Consensus 50 ~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~-L~~~l~~a~~ll~~c~~~sklyl~~~~~~~~~~~~~~~ 128 (683)
.-++|=..|++++.-+.++|+.|...++ +.+.- ..... -....++++.|+..... +++.....|-...
T Consensus 14 ~L~~~R~~LV~~l~~V~~lLD~LL~~~V--L~~ee-~~I~~~~~T~~~kaR~Lld~v~~--------KG~~A~~~F~~~L 82 (98)
T 2nz7_A 14 LLKSNRELLVTHIRNTQCLVDNLLKNDY--FSAED-AEIVCACPTQPDKVRKILDLVQS--------KGEEVSEFFLYLL 82 (98)
T ss_dssp HHHHTHHHHHHHCCCCHHHHHHHHHTTS--SCHHH-HHHHHTCCSHHHHHHHHHHHHHH--------HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHcCC--CCHHH-HHHHccCCCcHHHHHHHHHHHHH--------HhHHHHHHHHHHH
Confidence 3355666789999999999999998876 55543 22221 23456889999877652 2344566677777
Q ss_pred HHHHHHHhc
Q 048793 129 IDLSTLLDI 137 (683)
Q Consensus 129 ~~l~~~l~~ 137 (683)
++..++|-.
T Consensus 83 ~e~~~~~~~ 91 (98)
T 2nz7_A 83 QQLADAYVD 91 (98)
T ss_dssp HHHHHSSGG
T ss_pred HHhCccchh
Confidence 777666543
No 247
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=21.47 E-value=33 Score=32.04 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=24.6
Q ss_pred cccccccCCCCceecCCccccchhhHHHHHhcC
Q 048793 278 RCPISLELMRNPVVVATGQTYDRQSISLWIESG 310 (683)
Q Consensus 278 ~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g 310 (683)
+||+|++.+....++|+ + .-|..|+.|+..+
T Consensus 143 tcP~t~~~l~~~~L~pN-~-~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 143 FDPVTRSPLTQDQLIPN-L-AMKEVIDAFIQEN 173 (179)
T ss_dssp BCTTTCCBCCGGGCEEC-H-HHHHHHHHHHHHC
T ss_pred CCCCCcCCCChhhCcch-H-HHHHHHHHHHHHC
Confidence 69999999987766664 3 4589999999763
No 248
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=20.37 E-value=30 Score=28.20 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=12.1
Q ss_pred CCCCcccccccccC
Q 048793 272 NVPADFRCPISLEL 285 (683)
Q Consensus 272 ~~p~~f~CPis~~~ 285 (683)
++|+++.||+|+--
T Consensus 64 dlPddW~CPvCga~ 77 (87)
T 1s24_A 64 DIPDDWCCPDCGAT 77 (87)
T ss_dssp GCCTTCCCSSSCCC
T ss_pred HCCCCCCCCCCCCC
Confidence 78999999999753
No 249
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.32 E-value=61 Score=27.77 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=38.0
Q ss_pred CcccccccccCCCC---ceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCC
Q 048793 275 ADFRCPISLELMRN---PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL 326 (683)
Q Consensus 275 ~~f~CPis~~~m~d---Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l 326 (683)
+-|+|..|...+.| ......|..||+.+-.+-+.. ...|..|++++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 55999999999974 456678999999887665532 2379999988775443
No 250
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.20 E-value=42 Score=26.96 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=21.5
Q ss_pred ccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793 277 FRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH 323 (683)
Q Consensus 277 f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~ 323 (683)
..||.|.+.|.- ..|+.+|..|=.. +.. ...||.|+++|..
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~-~~~-~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKD-FSL-QALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCE-EEE-EEECSSSCSCCCE
T ss_pred CCCCCCCCcccc----CCCceECcccccc-CCC-cccCcchhhHHHH
Confidence 569999877641 1122224433110 111 2379999988754
Done!