Query 048794
Match_columns 967
No_of_seqs 518 out of 4439
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 13:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9.9E-72 2.2E-76 656.3 74.1 679 48-859 47-727 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.6E-71 7.9E-76 651.6 73.8 678 14-823 48-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.5E-59 5.4E-64 535.3 67.2 514 16-535 369-908 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.8E-58 6E-63 526.7 70.1 431 83-517 366-799 (1060)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-53 1.7E-57 514.6 102.8 873 16-949 21-894 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-49 3.8E-54 485.1 105.8 848 13-921 51-899 (899)
7 PLN03081 pentatricopeptide (PP 100.0 2.6E-53 5.5E-58 487.6 53.6 470 51-536 86-557 (697)
8 PLN03081 pentatricopeptide (PP 100.0 3.8E-52 8.2E-57 478.0 53.0 474 16-505 86-561 (697)
9 PRK11447 cellulose synthase su 100.0 2E-29 4.3E-34 304.5 79.8 443 409-928 276-749 (1157)
10 PRK11447 cellulose synthase su 100.0 1.4E-28 3.1E-33 297.0 82.6 660 94-885 35-738 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.3E-27 2.8E-32 273.2 74.6 686 206-944 58-762 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.8E-27 4E-32 271.9 67.0 641 237-956 54-741 (987)
13 KOG2002 TPR-containing nuclear 100.0 7E-27 1.5E-31 246.8 57.0 578 313-939 146-763 (1018)
14 KOG4626 O-linked N-acetylgluco 100.0 2.3E-29 5E-34 251.0 30.9 451 442-944 53-508 (966)
15 KOG2002 TPR-containing nuclear 100.0 5.7E-25 1.2E-29 232.5 62.2 606 243-925 146-801 (1018)
16 KOG4626 O-linked N-acetylgluco 100.0 8.1E-28 1.7E-32 240.0 36.1 450 371-910 52-507 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 4.3E-21 9.2E-26 217.9 48.8 261 661-928 307-577 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-22 1.2E-26 225.0 40.5 251 695-952 306-568 (615)
19 PRK15174 Vi polysaccharide exp 99.9 7.7E-21 1.7E-25 214.1 41.3 328 512-885 47-379 (656)
20 KOG2076 RNA polymerase III tra 99.9 7E-18 1.5E-22 178.4 59.2 395 203-637 150-551 (895)
21 KOG0495 HAT repeat protein [RN 99.9 1.4E-17 3.1E-22 168.6 56.2 513 352-928 366-886 (913)
22 PRK10049 pgaA outer membrane p 99.9 1.1E-19 2.3E-24 209.8 47.0 422 402-929 15-463 (765)
23 KOG0495 HAT repeat protein [RN 99.9 1.4E-16 3.1E-21 161.5 61.1 618 206-899 265-891 (913)
24 PRK15174 Vi polysaccharide exp 99.9 6.3E-20 1.4E-24 206.7 41.9 249 618-887 150-403 (656)
25 KOG2076 RNA polymerase III tra 99.9 8.7E-16 1.9E-20 162.8 65.1 400 123-535 140-554 (895)
26 PRK10049 pgaA outer membrane p 99.9 3.9E-18 8.5E-23 196.9 49.1 190 658-851 247-455 (765)
27 PRK11788 tetratricopeptide rep 99.9 2.9E-20 6.3E-25 201.0 29.6 303 655-963 42-359 (389)
28 PRK11788 tetratricopeptide rep 99.9 9.1E-19 2E-23 189.4 34.6 304 515-893 43-353 (389)
29 PRK14574 hmsH outer membrane p 99.9 4.3E-16 9.4E-21 175.3 55.6 468 376-913 43-537 (822)
30 PRK14574 hmsH outer membrane p 99.9 1.3E-16 2.7E-21 179.6 49.9 232 699-933 267-524 (822)
31 KOG2003 TPR repeat-containing 99.8 8.4E-17 1.8E-21 155.7 38.5 482 261-872 200-708 (840)
32 KOG4318 Bicoid mRNA stability 99.8 2.9E-14 6.2E-19 150.3 55.7 273 4-312 12-286 (1088)
33 KOG2003 TPR repeat-containing 99.8 3.3E-16 7.2E-21 151.6 37.1 483 368-907 202-708 (840)
34 KOG1173 Anaphase-promoting com 99.8 9E-16 2E-20 153.9 35.1 285 643-934 239-531 (611)
35 KOG1915 Cell cycle control pro 99.8 4.4E-13 9.5E-18 131.4 51.3 453 308-798 84-550 (677)
36 KOG1915 Cell cycle control pro 99.8 9.2E-13 2E-17 129.1 48.2 439 51-501 72-536 (677)
37 KOG1155 Anaphase-promoting com 99.8 1.4E-13 3E-18 134.7 41.8 369 506-928 163-542 (559)
38 KOG1126 DNA-binding cell divis 99.7 6E-16 1.3E-20 158.9 24.4 291 625-928 332-626 (638)
39 KOG1155 Anaphase-promoting com 99.7 5.9E-15 1.3E-19 144.1 29.8 355 537-947 160-528 (559)
40 KOG4422 Uncharacterized conser 99.7 2.8E-13 6.1E-18 131.0 40.5 427 53-502 117-591 (625)
41 KOG4318 Bicoid mRNA stability 99.7 4.4E-13 9.4E-18 141.6 45.1 589 108-781 11-624 (1088)
42 KOG0547 Translocase of outer m 99.7 2.6E-14 5.6E-19 140.6 33.4 234 685-928 328-572 (606)
43 COG2956 Predicted N-acetylgluc 99.7 1.9E-15 4.2E-20 140.5 24.1 295 660-963 47-359 (389)
44 KOG4162 Predicted calmodulin-b 99.7 1.4E-12 3.1E-17 136.3 47.2 428 468-929 319-790 (799)
45 KOG1126 DNA-binding cell divis 99.7 1.5E-16 3.2E-21 163.3 17.7 286 660-958 331-623 (638)
46 PF13429 TPR_15: Tetratricopep 99.7 6.3E-18 1.4E-22 171.9 7.1 254 688-947 13-269 (280)
47 KOG0985 Vesicle coat protein c 99.7 9.2E-10 2E-14 118.1 67.1 817 53-945 361-1298(1666)
48 KOG4422 Uncharacterized conser 99.7 2.8E-12 6.1E-17 124.2 44.2 445 16-483 115-607 (625)
49 KOG0547 Translocase of outer m 99.7 2.4E-13 5.3E-18 133.9 36.6 225 655-886 333-565 (606)
50 KOG0985 Vesicle coat protein c 99.7 4.9E-10 1.1E-14 120.1 61.1 767 12-848 355-1245(1666)
51 PF13429 TPR_15: Tetratricopep 99.7 2.4E-16 5.3E-21 160.2 12.3 261 653-921 13-276 (280)
52 KOG2047 mRNA splicing factor [ 99.7 2.4E-09 5.2E-14 109.9 60.8 229 647-880 476-716 (835)
53 KOG2047 mRNA splicing factor [ 99.7 4.7E-09 1E-13 107.8 62.6 658 40-816 16-718 (835)
54 KOG1173 Anaphase-promoting com 99.7 3.4E-12 7.4E-17 128.7 38.2 493 156-712 15-518 (611)
55 TIGR00540 hemY_coli hemY prote 99.6 2.5E-13 5.5E-18 145.4 31.5 293 621-919 93-396 (409)
56 KOG1127 TPR repeat-containing 99.6 8.3E-10 1.8E-14 118.9 56.3 548 382-941 473-1087(1238)
57 TIGR00540 hemY_coli hemY prote 99.6 7.1E-13 1.5E-17 142.0 33.7 227 654-885 159-397 (409)
58 KOG1174 Anaphase-promoting com 99.6 6E-12 1.3E-16 121.4 35.8 299 622-929 206-507 (564)
59 KOG3616 Selective LIM binding 99.6 1.4E-09 3E-14 112.8 54.5 457 25-565 452-932 (1636)
60 PRK10747 putative protoheme IX 99.6 9.3E-13 2E-17 140.1 32.7 286 623-922 95-390 (398)
61 PRK10747 putative protoheme IX 99.6 2.9E-13 6.3E-18 143.9 28.2 283 660-953 96-388 (398)
62 KOG1127 TPR repeat-containing 99.6 1.1E-08 2.4E-13 110.5 60.9 671 103-864 474-1186(1238)
63 KOG1129 TPR repeat-containing 99.6 5.2E-14 1.1E-18 131.0 18.5 248 687-940 227-477 (478)
64 KOG4162 Predicted calmodulin-b 99.6 2.2E-09 4.9E-14 113.0 54.6 434 329-852 320-783 (799)
65 KOG3616 Selective LIM binding 99.6 1.1E-08 2.4E-13 106.3 58.3 524 128-744 621-1181(1636)
66 KOG3785 Uncharacterized conser 99.6 4.3E-11 9.3E-16 113.1 36.4 461 339-896 29-497 (557)
67 KOG3785 Uncharacterized conser 99.6 4.1E-11 8.8E-16 113.3 32.7 454 376-929 31-497 (557)
68 COG2956 Predicted N-acetylgluc 99.5 1.4E-11 3.1E-16 115.3 28.7 293 518-885 46-345 (389)
69 KOG1156 N-terminal acetyltrans 99.5 1.6E-09 3.5E-14 111.6 44.0 459 380-919 20-508 (700)
70 KOG0548 Molecular co-chaperone 99.5 5.8E-12 1.3E-16 126.6 25.7 236 687-937 228-471 (539)
71 KOG1174 Anaphase-promoting com 99.5 3.4E-10 7.5E-15 109.5 36.6 292 482-853 206-501 (564)
72 COG3071 HemY Uncharacterized e 99.5 7.5E-10 1.6E-14 107.6 36.4 286 64-359 96-388 (400)
73 KOG1129 TPR repeat-containing 99.5 3.7E-12 8E-17 118.9 19.8 234 652-893 227-462 (478)
74 KOG1156 N-terminal acetyltrans 99.5 2.5E-09 5.5E-14 110.2 41.2 426 440-921 11-467 (700)
75 KOG2376 Signal recognition par 99.5 4.1E-09 8.8E-14 107.5 41.0 148 768-919 356-517 (652)
76 TIGR02521 type_IV_pilW type IV 99.5 1.8E-11 3.9E-16 122.3 24.2 196 722-921 35-231 (234)
77 KOG2376 Signal recognition par 99.4 4.4E-09 9.5E-14 107.2 39.1 228 301-545 16-262 (652)
78 KOG3617 WD40 and TPR repeat-co 99.4 1.7E-08 3.7E-13 106.4 43.6 259 121-429 725-994 (1416)
79 KOG1840 Kinesin light chain [C 99.4 3.4E-11 7.3E-16 126.4 23.9 236 685-920 201-477 (508)
80 PRK12370 invasion protein regu 99.4 5.9E-11 1.3E-15 132.3 27.4 180 664-850 320-500 (553)
81 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.4E-14 105.4 33.0 288 29-326 96-390 (400)
82 PRK12370 invasion protein regu 99.4 6.2E-11 1.4E-15 132.1 26.4 249 663-922 276-535 (553)
83 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 115.1 25.8 199 683-886 31-231 (234)
84 KOG0548 Molecular co-chaperone 99.4 2.4E-09 5.3E-14 108.2 32.9 105 375-482 10-114 (539)
85 COG3063 PilF Tfp pilus assembl 99.4 1E-10 2.3E-15 104.6 20.7 203 722-928 39-242 (250)
86 KOG1840 Kinesin light chain [C 99.4 1.1E-10 2.4E-15 122.6 23.7 238 648-885 199-477 (508)
87 PRK11189 lipoprotein NlpI; Pro 99.4 7.3E-11 1.6E-15 119.9 21.6 119 662-782 40-161 (296)
88 KOG0624 dsRNA-activated protei 99.4 7.3E-09 1.6E-13 98.0 32.4 232 618-853 112-371 (504)
89 PRK11189 lipoprotein NlpI; Pro 99.3 7.1E-10 1.5E-14 112.7 26.1 224 697-929 40-272 (296)
90 KOG0624 dsRNA-activated protei 99.3 1.5E-09 3.3E-14 102.5 25.4 255 648-929 106-377 (504)
91 COG3063 PilF Tfp pilus assembl 99.3 1.9E-09 4.1E-14 96.7 24.1 201 686-893 38-240 (250)
92 PF12569 NARP1: NMDA receptor- 99.3 2.2E-09 4.7E-14 114.7 29.3 294 617-922 9-334 (517)
93 PF12569 NARP1: NMDA receptor- 99.3 1.3E-07 2.9E-12 101.2 40.9 291 96-395 13-333 (517)
94 KOG1125 TPR repeat-containing 99.2 2.1E-09 4.6E-14 109.6 21.3 258 616-879 289-563 (579)
95 KOG1125 TPR repeat-containing 99.2 2.6E-10 5.6E-15 116.1 14.2 230 689-927 291-532 (579)
96 KOG3617 WD40 and TPR repeat-co 99.2 1.3E-05 2.9E-10 85.3 52.4 336 129-534 807-1172(1416)
97 KOG4340 Uncharacterized conser 99.2 1.9E-08 4.1E-13 93.3 23.8 192 371-571 14-208 (459)
98 cd05804 StaR_like StaR_like; a 99.1 1E-07 2.2E-12 101.7 30.9 307 613-923 7-337 (355)
99 KOG4340 Uncharacterized conser 99.1 1.7E-07 3.7E-12 87.1 27.1 203 12-224 5-210 (459)
100 cd05804 StaR_like StaR_like; a 99.1 5.9E-07 1.3E-11 95.8 34.1 259 621-886 52-335 (355)
101 PRK15359 type III secretion sy 99.1 1.2E-09 2.6E-14 96.9 10.7 116 808-929 13-128 (144)
102 PF04733 Coatomer_E: Coatomer 99.0 1.1E-09 2.4E-14 109.0 10.7 259 655-928 8-271 (290)
103 PF04733 Coatomer_E: Coatomer 99.0 7.3E-09 1.6E-13 103.1 14.4 252 619-886 8-264 (290)
104 KOG2053 Mitochondrial inherita 99.0 0.00013 2.8E-09 79.5 48.3 488 27-562 19-562 (932)
105 PLN02789 farnesyltranstransfer 99.0 5.5E-08 1.2E-12 98.2 19.6 202 732-939 51-268 (320)
106 KOG3060 Uncharacterized conser 98.9 1.1E-07 2.5E-12 86.6 18.7 168 756-928 55-226 (289)
107 PRK04841 transcriptional regul 98.9 1.7E-06 3.7E-11 105.1 34.9 274 655-928 459-766 (903)
108 PRK10370 formate-dependent nit 98.9 5.9E-08 1.3E-12 91.2 16.6 152 725-893 23-178 (198)
109 PLN02789 farnesyltranstransfer 98.9 6.6E-07 1.4E-11 90.5 24.4 125 654-781 43-170 (320)
110 TIGR03302 OM_YfiO outer membra 98.9 9.3E-08 2E-12 94.7 17.9 186 718-924 33-234 (235)
111 COG5010 TadD Flp pilus assembl 98.9 5E-08 1.1E-12 90.1 14.0 178 737-920 52-229 (257)
112 PF13041 PPR_2: PPR repeat fam 98.9 7.3E-09 1.6E-13 72.1 6.7 49 225-273 1-49 (50)
113 COG5010 TadD Flp pilus assembl 98.9 6.7E-07 1.5E-11 82.8 21.1 180 722-909 70-251 (257)
114 PRK10370 formate-dependent nit 98.9 4.3E-07 9.4E-12 85.4 20.7 118 731-852 52-173 (198)
115 PRK04841 transcriptional regul 98.9 5E-06 1.1E-10 101.1 35.7 235 653-887 496-760 (903)
116 KOG1128 Uncharacterized conser 98.9 3.1E-07 6.8E-12 96.7 21.1 215 686-922 401-616 (777)
117 KOG1914 mRNA cleavage and poly 98.9 0.00011 2.4E-09 75.1 38.0 189 734-924 309-503 (656)
118 PF13041 PPR_2: PPR repeat fam 98.9 8.8E-09 1.9E-13 71.7 6.5 49 155-203 1-49 (50)
119 PRK14720 transcript cleavage f 98.8 1.1E-06 2.3E-11 98.9 25.8 284 505-930 29-314 (906)
120 PRK15179 Vi polysaccharide bio 98.8 3.4E-07 7.3E-12 102.3 21.7 141 749-895 82-224 (694)
121 TIGR03302 OM_YfiO outer membra 98.8 4.3E-07 9.2E-12 90.0 19.9 186 680-886 30-231 (235)
122 PRK15359 type III secretion sy 98.8 3.5E-07 7.7E-12 81.1 17.1 122 774-903 14-136 (144)
123 KOG3060 Uncharacterized conser 98.8 4E-06 8.6E-11 76.8 22.0 153 730-886 64-219 (289)
124 TIGR02552 LcrH_SycD type III s 98.8 9.1E-08 2E-12 85.1 11.7 115 810-928 5-120 (135)
125 PRK14720 transcript cleavage f 98.7 6.1E-07 1.3E-11 100.8 20.1 237 645-936 28-267 (906)
126 KOG0550 Molecular chaperone (D 98.7 3.8E-06 8.2E-11 82.5 22.3 91 760-852 256-350 (486)
127 PRK15179 Vi polysaccharide bio 98.7 3.3E-06 7.1E-11 94.6 24.9 215 647-885 27-243 (694)
128 KOG1128 Uncharacterized conser 98.7 9.1E-07 2E-11 93.3 18.5 224 605-851 391-615 (777)
129 KOG0553 TPR repeat-containing 98.7 8.7E-08 1.9E-12 90.3 8.8 97 830-929 88-185 (304)
130 KOG3081 Vesicle coat complex C 98.7 1.1E-05 2.3E-10 74.7 21.9 249 619-885 15-269 (299)
131 KOG1070 rRNA processing protei 98.7 2.4E-06 5.2E-11 96.4 21.2 203 715-922 1455-1663(1710)
132 KOG1070 rRNA processing protei 98.7 9.6E-06 2.1E-10 91.8 25.7 246 528-845 1445-1693(1710)
133 KOG1914 mRNA cleavage and poly 98.6 0.00092 2E-08 68.7 43.9 154 383-538 347-503 (656)
134 KOG3081 Vesicle coat complex C 98.6 5.3E-05 1.1E-09 70.3 23.6 170 671-851 96-270 (299)
135 KOG0550 Molecular chaperone (D 98.6 2.9E-05 6.2E-10 76.5 22.8 292 481-834 58-368 (486)
136 COG4783 Putative Zn-dependent 98.5 7.4E-06 1.6E-10 82.9 19.2 120 756-879 309-429 (484)
137 KOG2053 Mitochondrial inherita 98.5 0.0046 1E-07 68.0 46.1 224 62-292 19-256 (932)
138 TIGR02552 LcrH_SycD type III s 98.4 7.8E-06 1.7E-10 72.6 15.2 108 775-886 5-113 (135)
139 PF14938 SNAP: Soluble NSF att 98.4 0.00014 3.1E-09 73.5 25.2 58 759-816 120-183 (282)
140 PF09976 TPR_21: Tetratricopep 98.4 1E-05 2.3E-10 72.3 15.1 115 801-919 24-144 (145)
141 COG4783 Putative Zn-dependent 98.4 9.5E-05 2.1E-09 75.2 22.7 141 723-886 311-453 (484)
142 PF14938 SNAP: Soluble NSF att 98.4 0.00011 2.4E-09 74.3 23.6 147 762-924 103-268 (282)
143 PF09976 TPR_21: Tetratricopep 98.4 1.5E-05 3.3E-10 71.2 14.9 117 765-884 23-144 (145)
144 KOG1130 Predicted G-alpha GTPa 98.3 2.3E-06 4.9E-11 83.6 9.3 132 790-921 197-343 (639)
145 TIGR02795 tol_pal_ybgF tol-pal 98.3 4.3E-06 9.4E-11 72.5 10.3 102 825-928 4-111 (119)
146 cd00189 TPR Tetratricopeptide 98.3 6E-06 1.3E-10 68.5 9.9 97 826-924 3-99 (100)
147 PLN03088 SGT1, suppressor of 98.3 5.7E-06 1.2E-10 86.2 11.1 105 793-902 7-113 (356)
148 KOG1130 Predicted G-alpha GTPa 98.3 2.3E-05 5E-10 76.8 14.2 132 719-850 196-342 (639)
149 COG3898 Uncharacterized membra 98.3 0.006 1.3E-07 60.3 30.2 288 625-929 97-398 (531)
150 PF13432 TPR_16: Tetratricopep 98.2 1E-06 2.3E-11 65.9 4.0 64 863-927 2-65 (65)
151 PRK15363 pathogenicity island 98.2 4.4E-05 9.5E-10 66.1 14.1 93 790-885 37-130 (157)
152 PRK15363 pathogenicity island 98.2 3.3E-05 7.2E-10 66.8 12.7 104 823-928 35-138 (157)
153 COG4235 Cytochrome c biogenesi 98.2 1.8E-06 3.8E-11 82.5 5.2 123 803-929 137-263 (287)
154 PRK02603 photosystem I assembl 98.2 2.2E-05 4.8E-10 72.7 11.7 118 789-928 36-155 (172)
155 CHL00033 ycf3 photosystem I as 98.2 1.4E-05 3.1E-10 73.8 10.4 100 769-869 15-117 (168)
156 KOG0553 TPR repeat-containing 98.1 1.9E-05 4.2E-10 74.9 10.8 131 759-894 87-222 (304)
157 PRK10153 DNA-binding transcrip 98.1 6.5E-05 1.4E-09 81.7 16.3 141 785-929 334-489 (517)
158 COG3898 Uncharacterized membra 98.1 0.011 2.4E-07 58.5 29.2 144 699-852 245-392 (531)
159 PF13414 TPR_11: TPR repeat; P 98.1 3.6E-06 7.7E-11 64.0 4.5 67 857-924 2-69 (69)
160 PF12895 Apc3: Anaphase-promot 98.1 4.7E-06 1E-10 66.1 5.4 78 802-883 3-83 (84)
161 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00021 4.6E-09 73.9 18.6 114 798-917 179-292 (395)
162 PF12854 PPR_1: PPR repeat 98.1 4.7E-06 1E-10 51.6 4.1 32 152-183 2-33 (34)
163 COG4700 Uncharacterized protei 98.1 0.00078 1.7E-08 58.9 17.8 130 751-884 87-219 (251)
164 COG4700 Uncharacterized protei 98.0 0.00078 1.7E-08 58.9 17.6 131 785-919 86-219 (251)
165 PF12854 PPR_1: PPR repeat 98.0 7.2E-06 1.6E-10 50.8 4.0 31 223-253 3-33 (34)
166 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00015 3.2E-09 62.7 13.5 94 791-886 5-104 (119)
167 PF14559 TPR_19: Tetratricopep 98.0 7.3E-06 1.6E-10 62.0 4.0 60 869-929 2-61 (68)
168 PLN03088 SGT1, suppressor of 98.0 0.00018 3.9E-09 75.1 15.6 104 757-864 6-110 (356)
169 PF12895 Apc3: Anaphase-promot 98.0 1.6E-05 3.5E-10 63.0 6.0 81 766-849 2-84 (84)
170 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0002 4.3E-09 74.1 15.4 121 758-885 174-295 (395)
171 CHL00033 ycf3 photosystem I as 98.0 0.00014 3E-09 67.2 13.1 102 825-927 37-154 (168)
172 PF12688 TPR_5: Tetratrico pep 97.9 0.0003 6.6E-09 58.9 13.0 93 792-885 5-102 (120)
173 cd00189 TPR Tetratricopeptide 97.9 0.00015 3.3E-09 59.8 11.7 92 791-885 3-95 (100)
174 PF12688 TPR_5: Tetratrico pep 97.9 0.00027 5.9E-09 59.3 12.2 95 825-920 3-102 (120)
175 PRK02603 photosystem I assembl 97.9 0.00054 1.2E-08 63.5 15.5 95 753-849 35-132 (172)
176 COG4235 Cytochrome c biogenesi 97.9 0.00054 1.2E-08 65.9 15.3 118 770-892 139-260 (287)
177 PRK10803 tol-pal system protei 97.8 0.00015 3.3E-09 71.0 11.2 86 799-886 154-245 (263)
178 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.055 1.2E-06 54.8 37.5 242 528-824 289-536 (660)
179 PRK10866 outer membrane biogen 97.8 0.0073 1.6E-07 59.0 21.7 70 507-576 32-104 (243)
180 PRK10866 outer membrane biogen 97.8 0.0031 6.7E-08 61.6 18.9 65 682-747 31-98 (243)
181 KOG2041 WD40 repeat protein [G 97.7 0.096 2.1E-06 56.1 31.6 206 119-359 689-905 (1189)
182 PF13414 TPR_11: TPR repeat; P 97.7 0.00012 2.7E-09 55.4 7.1 62 788-851 3-66 (69)
183 PRK10153 DNA-binding transcrip 97.7 0.0031 6.6E-08 68.9 18.8 88 770-861 401-489 (517)
184 PRK11906 transcriptional regul 97.7 0.0005 1.1E-08 70.6 11.9 148 804-955 274-436 (458)
185 PF13371 TPR_9: Tetratricopept 97.6 6.9E-05 1.5E-09 57.6 4.2 64 865-929 2-65 (73)
186 PF13281 DUF4071: Domain of un 97.6 0.0043 9.4E-08 63.1 17.4 172 756-929 144-341 (374)
187 KOG2796 Uncharacterized conser 97.6 0.014 3E-07 54.4 18.9 131 755-886 179-314 (366)
188 PF13432 TPR_16: Tetratricopep 97.6 0.00029 6.2E-09 52.6 7.0 56 794-851 3-59 (65)
189 PF13525 YfiO: Outer membrane 97.6 0.011 2.3E-07 56.4 19.4 50 863-913 146-198 (203)
190 COG0457 NrfG FOG: TPR repeat [ 97.6 0.064 1.4E-06 53.7 27.1 223 697-925 37-268 (291)
191 KOG2796 Uncharacterized conser 97.6 0.0017 3.7E-08 60.2 12.8 137 792-929 181-322 (366)
192 COG1729 Uncharacterized protei 97.5 0.00065 1.4E-08 64.6 10.1 99 790-892 144-248 (262)
193 PF13525 YfiO: Outer membrane 97.5 0.019 4E-07 54.8 20.3 63 650-712 7-71 (203)
194 PRK15331 chaperone protein Sic 97.5 0.0004 8.6E-09 60.6 7.3 93 791-886 40-133 (165)
195 KOG0543 FKBP-type peptidyl-pro 97.4 0.0036 7.8E-08 62.8 14.3 100 824-926 258-359 (397)
196 PRK10803 tol-pal system protei 97.4 0.0024 5.3E-08 62.7 13.1 86 764-851 154-245 (263)
197 PF07079 DUF1347: Protein of u 97.4 0.23 5E-06 50.8 41.8 121 377-500 389-523 (549)
198 COG0457 NrfG FOG: TPR repeat [ 97.3 0.03 6.6E-07 56.2 21.3 225 731-957 36-267 (291)
199 PF14559 TPR_19: Tetratricopep 97.3 0.00056 1.2E-08 51.6 6.1 50 835-885 3-52 (68)
200 PF10037 MRP-S27: Mitochondria 97.3 0.0049 1.1E-07 64.3 13.8 124 362-485 61-186 (429)
201 KOG2041 WD40 repeat protein [G 97.3 0.38 8.3E-06 51.8 32.8 207 399-675 689-905 (1189)
202 PRK15331 chaperone protein Sic 97.3 0.016 3.4E-07 50.9 14.6 92 758-851 42-133 (165)
203 PF10037 MRP-S27: Mitochondria 97.3 0.004 8.6E-08 64.9 13.1 117 84-200 63-181 (429)
204 KOG0543 FKBP-type peptidyl-pro 97.3 0.00037 8E-09 69.6 5.1 92 859-951 258-350 (397)
205 TIGR00756 PPR pentatricopeptid 97.3 0.00057 1.2E-08 43.1 4.4 33 159-191 2-34 (35)
206 PF05843 Suf: Suppressor of fo 97.2 0.0018 4E-08 65.1 10.2 130 755-887 3-136 (280)
207 KOG1258 mRNA processing protei 97.2 0.43 9.3E-06 51.1 31.0 173 754-929 298-477 (577)
208 PF13428 TPR_14: Tetratricopep 97.2 0.00013 2.7E-09 48.9 1.0 40 894-933 2-42 (44)
209 PF13812 PPR_3: Pentatricopept 97.2 0.00056 1.2E-08 42.8 3.9 32 159-190 3-34 (34)
210 PF05843 Suf: Suppressor of fo 97.2 0.015 3.3E-07 58.5 15.8 134 404-541 3-141 (280)
211 TIGR00756 PPR pentatricopeptid 97.2 0.00077 1.7E-08 42.5 4.3 31 55-85 3-33 (35)
212 KOG1941 Acetylcholine receptor 97.1 0.06 1.3E-06 52.9 18.4 228 622-850 16-273 (518)
213 PF13812 PPR_3: Pentatricopept 97.1 0.00084 1.8E-08 41.9 4.2 31 229-259 3-33 (34)
214 PF13512 TPR_18: Tetratricopep 97.1 0.0081 1.8E-07 51.3 11.0 104 824-929 11-135 (142)
215 PF13371 TPR_9: Tetratricopept 97.1 0.0033 7E-08 48.2 8.0 53 797-851 4-57 (73)
216 COG1729 Uncharacterized protei 97.1 0.015 3.3E-07 55.5 13.7 92 760-851 148-243 (262)
217 PF13424 TPR_12: Tetratricopep 97.1 0.0018 4E-08 50.4 6.5 61 825-885 7-73 (78)
218 PF13424 TPR_12: Tetratricopep 97.0 0.0018 3.8E-08 50.5 6.1 62 790-851 7-74 (78)
219 KOG1586 Protein required for f 97.0 0.059 1.3E-06 49.6 16.1 102 828-929 118-231 (288)
220 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.52 1.1E-05 48.2 38.3 137 403-542 398-537 (660)
221 KOG1941 Acetylcholine receptor 97.0 0.028 6E-07 55.1 14.6 286 659-944 17-349 (518)
222 PF08579 RPM2: Mitochondrial r 96.9 0.014 3E-07 47.0 10.0 72 61-132 34-114 (120)
223 PF07079 DUF1347: Protein of u 96.9 0.68 1.5E-05 47.6 44.5 58 798-862 472-529 (549)
224 PRK11906 transcriptional regul 96.9 0.064 1.4E-06 55.7 17.0 144 734-883 274-432 (458)
225 KOG1586 Protein required for f 96.9 0.27 5.9E-06 45.5 18.9 18 764-781 165-182 (288)
226 PF13431 TPR_17: Tetratricopep 96.8 6.4E-05 1.4E-09 46.5 -2.9 31 916-946 2-33 (34)
227 PF07719 TPR_2: Tetratricopept 96.8 0.00061 1.3E-08 42.6 1.6 33 894-926 2-34 (34)
228 PF08579 RPM2: Mitochondrial r 96.8 0.023 5E-07 45.8 9.9 70 28-97 36-114 (120)
229 PF13281 DUF4071: Domain of un 96.7 0.38 8.2E-06 49.4 21.2 76 688-763 146-227 (374)
230 KOG1585 Protein required for f 96.7 0.29 6.3E-06 45.6 18.0 128 799-927 121-261 (308)
231 PF01535 PPR: PPR repeat; Int 96.6 0.0026 5.5E-08 38.6 3.3 28 159-186 2-29 (31)
232 KOG1550 Extracellular protein 96.6 0.49 1.1E-05 53.1 23.3 253 658-928 259-544 (552)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0051 1.1E-07 63.4 6.9 66 820-887 71-141 (453)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.011 2.3E-07 61.2 8.9 66 750-817 72-141 (453)
235 KOG1538 Uncharacterized conser 96.6 0.52 1.1E-05 50.4 20.9 80 755-847 749-828 (1081)
236 KOG4555 TPR repeat-containing 96.5 0.042 9.2E-07 45.2 10.2 90 797-888 52-145 (175)
237 PF00515 TPR_1: Tetratricopept 96.5 0.0012 2.7E-08 41.1 1.4 33 894-926 2-34 (34)
238 COG4105 ComL DNA uptake lipopr 96.5 0.29 6.3E-06 46.6 17.3 55 728-782 44-100 (254)
239 KOG1538 Uncharacterized conser 96.5 0.68 1.5E-05 49.6 21.3 83 436-531 746-828 (1081)
240 PF01535 PPR: PPR repeat; Int 96.5 0.0037 8E-08 37.9 3.4 27 230-256 3-29 (31)
241 KOG1585 Protein required for f 96.4 0.11 2.3E-06 48.4 13.5 22 617-638 36-57 (308)
242 COG4105 ComL DNA uptake lipopr 96.4 0.92 2E-05 43.3 21.0 57 758-815 172-231 (254)
243 PF03704 BTAD: Bacterial trans 96.4 0.14 3.1E-06 45.8 14.5 55 793-849 67-122 (146)
244 COG3118 Thioredoxin domain-con 96.3 0.28 6.1E-06 47.6 16.0 141 728-872 144-286 (304)
245 PF10300 DUF3808: Protein of u 96.2 0.14 3.1E-06 55.8 16.0 162 756-920 191-374 (468)
246 KOG1258 mRNA processing protei 96.2 2.3 5E-05 45.8 35.9 134 16-151 44-180 (577)
247 KOG2610 Uncharacterized conser 96.2 0.085 1.8E-06 51.3 12.1 188 728-919 113-312 (491)
248 COG4649 Uncharacterized protei 96.2 0.13 2.7E-06 45.0 11.9 121 800-920 70-194 (221)
249 PF13512 TPR_18: Tetratricopep 96.2 0.14 2.9E-06 44.1 11.9 55 728-782 20-76 (142)
250 PF10300 DUF3808: Protein of u 96.1 0.18 4E-06 54.9 15.8 161 688-850 193-374 (468)
251 KOG4555 TPR repeat-containing 96.1 0.13 2.8E-06 42.5 10.7 93 760-853 50-145 (175)
252 PF13428 TPR_14: Tetratricopep 96.1 0.017 3.7E-07 38.5 5.0 40 860-900 3-42 (44)
253 PF06239 ECSIT: Evolutionarily 96.0 0.096 2.1E-06 48.2 10.9 88 226-313 46-154 (228)
254 KOG2471 TPR repeat-containing 96.0 2.2 4.7E-05 44.4 21.1 114 616-730 244-381 (696)
255 KOG4648 Uncharacterized conser 96.0 0.02 4.4E-07 55.5 6.8 91 724-816 103-193 (536)
256 PF03704 BTAD: Bacterial trans 96.0 0.074 1.6E-06 47.7 10.4 71 825-896 64-139 (146)
257 PF06239 ECSIT: Evolutionarily 95.9 0.15 3.2E-06 47.0 11.6 103 365-486 45-152 (228)
258 COG4785 NlpI Lipoprotein NlpI, 95.9 0.59 1.3E-05 42.8 14.9 97 486-583 79-175 (297)
259 KOG4234 TPR repeat-containing 95.9 0.17 3.7E-06 45.4 11.4 91 760-852 102-197 (271)
260 KOG2610 Uncharacterized conser 95.8 0.2 4.3E-06 48.9 12.8 154 659-815 114-274 (491)
261 KOG1550 Extracellular protein 95.8 1.4 3E-05 49.6 21.7 254 664-939 228-519 (552)
262 COG3118 Thioredoxin domain-con 95.8 0.88 1.9E-05 44.3 16.9 147 691-840 142-289 (304)
263 COG2976 Uncharacterized protei 95.8 0.2 4.3E-06 45.1 11.7 91 795-887 96-188 (207)
264 KOG2114 Vacuolar assembly/sort 95.7 4.7 0.0001 45.3 28.4 177 91-288 338-516 (933)
265 KOG4648 Uncharacterized conser 95.7 0.017 3.7E-07 56.0 5.0 95 794-893 103-198 (536)
266 PF04184 ST7: ST7 protein; In 95.6 0.43 9.3E-06 49.9 15.1 103 827-929 263-382 (539)
267 COG4649 Uncharacterized protei 95.6 0.7 1.5E-05 40.6 13.9 53 133-185 143-195 (221)
268 KOG2114 Vacuolar assembly/sort 95.6 5.4 0.00012 44.8 26.4 177 266-463 338-516 (933)
269 COG2976 Uncharacterized protei 95.5 0.84 1.8E-05 41.3 14.5 94 830-925 96-191 (207)
270 PF13181 TPR_8: Tetratricopept 95.5 0.0059 1.3E-07 38.0 0.9 32 895-926 3-34 (34)
271 PF10345 Cohesin_load: Cohesin 95.4 6.8 0.00015 45.0 38.5 59 791-850 538-604 (608)
272 PF08631 SPO22: Meiosis protei 95.4 3.6 7.7E-05 41.6 23.4 125 413-538 4-152 (278)
273 PF04184 ST7: ST7 protein; In 95.3 2.3 5.1E-05 44.7 18.8 64 648-711 259-323 (539)
274 KOG4234 TPR repeat-containing 95.3 0.41 8.8E-06 43.1 11.6 94 795-893 102-201 (271)
275 PF09205 DUF1955: Domain of un 95.2 0.86 1.9E-05 38.1 12.3 139 238-398 13-151 (161)
276 COG0790 FOG: TPR repeat, SEL1 95.1 4.5 9.7E-05 41.5 24.3 149 733-891 92-270 (292)
277 COG1747 Uncharacterized N-term 95.1 3.8 8.1E-05 43.1 19.3 226 681-930 64-296 (711)
278 PF04840 Vps16_C: Vps16, C-ter 95.0 5 0.00011 41.1 28.9 82 336-427 181-262 (319)
279 COG4785 NlpI Lipoprotein NlpI, 95.0 2.4 5.3E-05 39.0 15.7 182 692-886 74-265 (297)
280 PF06552 TOM20_plant: Plant sp 94.8 0.035 7.7E-07 49.2 4.0 53 875-929 52-116 (186)
281 PRK09687 putative lyase; Provi 94.8 5.1 0.00011 40.3 26.6 21 864-885 241-261 (280)
282 KOG3364 Membrane protein invol 94.8 0.12 2.6E-06 43.1 6.7 74 855-929 29-107 (149)
283 PF13431 TPR_17: Tetratricopep 94.5 0.053 1.1E-06 33.5 3.1 22 892-913 12-33 (34)
284 KOG1464 COP9 signalosome, subu 94.4 4.8 0.0001 38.4 18.1 209 661-872 40-286 (440)
285 COG2909 MalT ATP-dependent tra 94.4 12 0.00025 42.8 27.7 229 692-920 424-686 (894)
286 PF12921 ATP13: Mitochondrial 94.4 0.63 1.4E-05 39.7 10.5 53 118-170 48-101 (126)
287 PF12921 ATP13: Mitochondrial 94.2 0.89 1.9E-05 38.9 11.1 49 468-516 48-97 (126)
288 PF02259 FAT: FAT domain; Int 94.2 1.7 3.8E-05 46.1 16.2 118 824-941 147-307 (352)
289 PF04053 Coatomer_WDAD: Coatom 93.8 2.2 4.7E-05 45.9 15.6 81 647-742 346-426 (443)
290 KOG2471 TPR repeat-containing 93.8 5.7 0.00012 41.5 17.3 108 797-905 249-381 (696)
291 PF13174 TPR_6: Tetratricopept 93.8 0.027 5.8E-07 34.6 0.8 30 896-925 3-32 (33)
292 PF08631 SPO22: Meiosis protei 93.7 8.9 0.00019 38.7 25.7 53 28-80 4-64 (278)
293 PF06552 TOM20_plant: Plant sp 93.6 0.59 1.3E-05 41.8 9.0 94 769-867 7-122 (186)
294 smart00299 CLH Clathrin heavy 93.5 5 0.00011 35.4 15.7 127 19-168 9-136 (140)
295 PF13176 TPR_7: Tetratricopept 93.4 0.18 3.9E-06 31.7 4.2 22 827-848 3-24 (36)
296 PF04053 Coatomer_WDAD: Coatom 93.4 3 6.5E-05 44.9 15.7 131 89-252 297-427 (443)
297 KOG4642 Chaperone-dependent E3 93.3 1.6 3.4E-05 40.9 11.4 101 763-867 20-126 (284)
298 KOG2280 Vacuolar assembly/sort 93.3 16 0.00036 40.7 37.3 109 791-918 687-795 (829)
299 PF04840 Vps16_C: Vps16, C-ter 93.3 11 0.00024 38.7 31.2 108 371-498 181-288 (319)
300 PF10602 RPN7: 26S proteasome 93.2 1.7 3.8E-05 40.0 11.9 96 790-885 38-140 (177)
301 PF14853 Fis1_TPR_C: Fis1 C-te 93.2 0.045 9.8E-07 37.8 1.2 34 896-929 4-37 (53)
302 PF13176 TPR_7: Tetratricopept 93.1 0.19 4.2E-06 31.5 4.0 25 861-885 2-26 (36)
303 PF09205 DUF1955: Domain of un 93.1 3.1 6.7E-05 34.9 11.5 58 831-889 94-151 (161)
304 KOG2280 Vacuolar assembly/sort 93.1 18 0.00038 40.5 36.1 89 337-427 442-532 (829)
305 PF09613 HrpB1_HrpK: Bacterial 93.0 3.6 7.8E-05 36.4 12.8 114 24-143 17-130 (160)
306 PF00515 TPR_1: Tetratricopept 93.0 0.21 4.5E-06 30.9 4.0 27 825-851 3-29 (34)
307 COG1747 Uncharacterized N-term 93.0 14 0.00031 39.1 24.1 60 631-691 188-247 (711)
308 PF07719 TPR_2: Tetratricopept 92.7 0.27 5.8E-06 30.3 4.3 27 860-886 3-29 (34)
309 KOG4642 Chaperone-dependent E3 92.7 1 2.2E-05 42.1 9.3 114 797-914 19-138 (284)
310 PRK09687 putative lyase; Provi 92.6 13 0.00027 37.5 31.1 225 681-928 35-269 (280)
311 KOG1920 IkappaB kinase complex 92.2 22 0.00048 42.1 20.8 50 827-884 1003-1052(1265)
312 PF02259 FAT: FAT domain; Int 92.2 17 0.00037 38.5 20.1 65 859-925 253-341 (352)
313 COG0790 FOG: TPR repeat, SEL1 92.2 15 0.00033 37.5 24.4 180 661-853 54-267 (292)
314 COG2909 MalT ATP-dependent tra 91.8 29 0.00063 39.9 30.0 238 611-848 414-684 (894)
315 smart00028 TPR Tetratricopepti 91.5 0.14 3.1E-06 30.9 2.0 31 895-925 3-33 (34)
316 COG3629 DnrI DNA-binding trans 91.4 1.5 3.2E-05 43.2 9.5 78 53-131 154-236 (280)
317 TIGR02561 HrpB1_HrpK type III 91.4 6.9 0.00015 34.0 12.2 68 13-82 3-74 (153)
318 PF09986 DUF2225: Uncharacteri 91.2 4.6 9.9E-05 38.5 12.5 86 801-886 90-193 (214)
319 PF09613 HrpB1_HrpK: Bacterial 91.0 11 0.00024 33.5 13.8 53 98-151 21-73 (160)
320 PF11207 DUF2989: Protein of u 90.9 2.2 4.8E-05 39.2 9.5 73 770-843 123-198 (203)
321 PF13170 DUF4003: Protein of u 90.8 20 0.00044 36.3 19.0 25 841-865 200-224 (297)
322 COG3629 DnrI DNA-binding trans 90.7 2.9 6.2E-05 41.2 10.7 59 790-850 155-214 (280)
323 KOG2300 Uncharacterized conser 90.6 25 0.00055 37.1 36.1 178 764-941 334-540 (629)
324 PF13170 DUF4003: Protein of u 90.5 21 0.00046 36.1 17.8 131 138-270 78-225 (297)
325 PF10602 RPN7: 26S proteasome 90.5 3.6 7.8E-05 37.9 10.8 63 649-711 37-101 (177)
326 PF11207 DUF2989: Protein of u 90.3 9 0.00019 35.5 12.7 77 800-878 119-198 (203)
327 KOG2300 Uncharacterized conser 90.2 28 0.0006 36.8 34.1 328 614-948 90-507 (629)
328 PF09986 DUF2225: Uncharacteri 88.9 9.8 0.00021 36.3 12.7 89 765-853 89-195 (214)
329 smart00299 CLH Clathrin heavy 88.8 16 0.00034 32.2 17.0 43 337-380 12-54 (140)
330 TIGR02561 HrpB1_HrpK type III 88.5 16 0.00035 31.9 12.2 52 99-151 22-73 (153)
331 PF07035 Mic1: Colon cancer-as 88.4 19 0.00041 32.5 14.9 101 143-253 15-115 (167)
332 KOG3364 Membrane protein invol 88.3 9.9 0.00021 32.3 10.4 67 785-852 29-100 (149)
333 KOG0545 Aryl-hydrocarbon recep 88.0 4 8.7E-05 38.4 8.9 61 864-925 236-296 (329)
334 KOG4507 Uncharacterized conser 87.8 0.53 1.1E-05 49.8 3.7 96 800-899 619-716 (886)
335 KOG3941 Intermediate in Toll s 87.3 5.9 0.00013 38.2 9.7 36 278-313 139-174 (406)
336 PF04097 Nic96: Nup93/Nic96; 87.3 62 0.0013 37.2 20.0 87 165-256 266-356 (613)
337 PF13181 TPR_8: Tetratricopept 87.0 1.7 3.7E-05 26.6 4.4 27 825-851 3-29 (34)
338 KOG3941 Intermediate in Toll s 87.0 5.4 0.00012 38.4 9.3 104 120-242 65-173 (406)
339 PF13374 TPR_10: Tetratricopep 86.6 1.7 3.6E-05 28.2 4.5 26 825-850 4-29 (42)
340 PRK11619 lytic murein transgly 86.4 69 0.0015 36.9 38.0 206 695-919 253-465 (644)
341 KOG2063 Vacuolar assembly/sort 86.2 78 0.0017 37.3 23.6 167 650-816 506-712 (877)
342 COG4976 Predicted methyltransf 85.6 0.9 2E-05 42.1 3.5 62 867-929 4-65 (287)
343 PF10345 Cohesin_load: Cohesin 85.3 78 0.0017 36.5 41.8 192 16-217 29-250 (608)
344 PF07035 Mic1: Colon cancer-as 85.3 28 0.00062 31.4 15.7 99 75-183 17-115 (167)
345 PRK13800 putative oxidoreducta 84.9 1E+02 0.0022 37.5 24.9 154 751-921 726-880 (897)
346 KOG1920 IkappaB kinase complex 84.2 1E+02 0.0023 37.0 26.8 28 228-255 791-820 (1265)
347 PF04910 Tcf25: Transcriptiona 84.1 24 0.00052 37.1 13.7 56 830-885 110-166 (360)
348 PF13374 TPR_10: Tetratricopep 83.9 2.4 5.1E-05 27.5 4.2 28 789-816 3-30 (42)
349 PF07720 TPR_3: Tetratricopept 83.5 0.76 1.6E-05 28.7 1.5 30 896-925 4-35 (36)
350 KOG2066 Vacuolar assembly/sort 83.2 90 0.0019 35.6 26.3 71 203-279 367-440 (846)
351 PRK13184 pknD serine/threonine 83.1 1.1E+02 0.0025 36.7 28.2 60 523-583 535-594 (932)
352 PRK13800 putative oxidoreducta 83.0 1.2E+02 0.0026 36.9 27.3 255 610-897 633-888 (897)
353 KOG4279 Serine/threonine prote 82.8 49 0.0011 37.1 15.1 104 799-929 298-402 (1226)
354 KOG2396 HAT (Half-A-TPR) repea 82.4 75 0.0016 34.1 39.8 91 476-568 464-557 (568)
355 PF13174 TPR_6: Tetratricopept 82.3 3.1 6.7E-05 25.1 4.0 27 512-538 5-31 (33)
356 PRK12798 chemotaxis protein; R 81.7 73 0.0016 33.5 22.4 154 486-639 126-284 (421)
357 PF07721 TPR_4: Tetratricopept 80.9 2.5 5.4E-05 24.1 2.9 20 862-881 5-24 (26)
358 PRK12798 chemotaxis protein; R 80.5 80 0.0017 33.2 21.6 199 694-895 123-332 (421)
359 cd00923 Cyt_c_Oxidase_Va Cytoc 80.5 12 0.00026 29.6 7.1 45 70-114 25-69 (103)
360 PF07721 TPR_4: Tetratricopept 80.5 2.6 5.6E-05 24.0 2.9 21 897-917 5-25 (26)
361 KOG0545 Aryl-hydrocarbon recep 80.3 18 0.00039 34.4 9.5 61 721-782 233-293 (329)
362 PF07163 Pex26: Pex26 protein; 80.1 63 0.0014 31.7 13.3 56 830-885 90-145 (309)
363 KOG0276 Vesicle coat complex C 80.0 29 0.00063 37.8 12.1 133 88-253 615-747 (794)
364 KOG0376 Serine-threonine phosp 79.8 1.5 3.4E-05 45.7 3.0 100 795-899 11-111 (476)
365 KOG2581 26S proteasome regulat 79.7 19 0.00042 36.9 10.3 126 800-928 138-282 (493)
366 KOG0376 Serine-threonine phosp 79.5 4.3 9.3E-05 42.6 6.0 96 725-826 11-108 (476)
367 PF04190 DUF410: Protein of un 79.3 52 0.0011 32.8 13.5 82 822-922 89-170 (260)
368 PF02284 COX5A: Cytochrome c o 78.9 24 0.00052 28.4 8.4 47 420-466 28-74 (108)
369 KOG0551 Hsp90 co-chaperone CNS 78.8 17 0.00036 36.4 9.3 94 790-885 83-180 (390)
370 PF14853 Fis1_TPR_C: Fis1 C-te 78.6 9.3 0.0002 26.6 5.6 31 862-894 5-35 (53)
371 PF10579 Rapsyn_N: Rapsyn N-te 78.5 7.8 0.00017 29.3 5.5 49 800-848 18-68 (80)
372 PF13929 mRNA_stabil: mRNA sta 78.5 73 0.0016 31.7 13.5 64 188-251 198-262 (292)
373 KOG3824 Huntingtin interacting 78.0 6.6 0.00014 38.3 6.3 61 868-929 126-186 (472)
374 cd00923 Cyt_c_Oxidase_Va Cytoc 77.5 34 0.00074 27.2 9.0 59 420-479 25-83 (103)
375 KOG4570 Uncharacterized conser 77.2 17 0.00037 35.9 8.8 103 152-256 59-164 (418)
376 KOG1308 Hsp70-interacting prot 77.2 1.6 3.5E-05 43.3 2.2 119 763-886 124-243 (377)
377 PRK10941 hypothetical protein; 77.0 5.9 0.00013 39.2 6.1 61 825-886 183-243 (269)
378 KOG4507 Uncharacterized conser 77.0 18 0.00038 39.1 9.5 114 53-168 608-721 (886)
379 KOG1308 Hsp70-interacting prot 76.9 4.6 9.9E-05 40.3 5.1 89 730-821 126-215 (377)
380 PF10579 Rapsyn_N: Rapsyn N-te 76.7 7.1 0.00015 29.5 4.8 46 835-880 18-65 (80)
381 PF04097 Nic96: Nup93/Nic96; 76.7 1.5E+02 0.0032 34.1 25.4 89 408-501 264-356 (613)
382 KOG2396 HAT (Half-A-TPR) repea 76.7 1.1E+02 0.0025 32.8 39.6 76 84-161 102-178 (568)
383 PRK10941 hypothetical protein; 76.2 20 0.00042 35.7 9.3 74 511-584 185-258 (269)
384 TIGR03504 FimV_Cterm FimV C-te 75.9 5.9 0.00013 26.2 3.8 23 864-886 5-27 (44)
385 COG4455 ImpE Protein of avirul 75.7 22 0.00049 33.1 8.6 71 759-832 7-81 (273)
386 PF12968 DUF3856: Domain of Un 74.7 48 0.001 27.6 9.3 87 799-885 20-127 (144)
387 smart00028 TPR Tetratricopepti 74.4 5.4 0.00012 23.4 3.5 24 792-815 5-28 (34)
388 COG5159 RPN6 26S proteasome re 73.9 94 0.002 30.5 19.4 167 615-781 48-234 (421)
389 PF02284 COX5A: Cytochrome c o 73.7 14 0.0003 29.7 5.9 47 70-116 28-74 (108)
390 KOG2062 26S proteasome regulat 73.2 1.7E+02 0.0037 33.2 42.6 125 723-851 506-634 (929)
391 PF00244 14-3-3: 14-3-3 protei 72.5 26 0.00057 34.1 9.2 28 690-717 8-35 (236)
392 PF04910 Tcf25: Transcriptiona 72.4 1.3E+02 0.0029 31.6 18.1 130 535-711 34-167 (360)
393 PF07163 Pex26: Pex26 protein; 71.9 42 0.00092 32.9 9.9 118 26-145 44-181 (309)
394 KOG1464 COP9 signalosome, subu 71.8 1E+02 0.0022 29.9 18.2 60 616-675 149-218 (440)
395 PF13762 MNE1: Mitochondrial s 71.8 43 0.00094 29.4 9.2 49 86-134 78-127 (145)
396 PRK15180 Vi polysaccharide bio 69.5 1.6E+02 0.0035 31.3 32.9 121 28-152 300-421 (831)
397 PF07575 Nucleopor_Nup85: Nup8 69.3 2.1E+02 0.0046 32.7 16.9 23 52-75 149-171 (566)
398 PRK11619 lytic murein transgly 69.1 2.3E+02 0.0049 32.9 40.8 54 514-567 319-372 (644)
399 PF08424 NRDE-2: NRDE-2, neces 68.6 1.5E+02 0.0033 30.7 17.5 118 104-223 48-185 (321)
400 KOG1839 Uncharacterized protei 68.6 61 0.0013 39.3 12.3 159 726-884 940-1125(1236)
401 PF14561 TPR_20: Tetratricopep 68.0 57 0.0012 26.0 8.5 51 823-873 22-73 (90)
402 KOG4570 Uncharacterized conser 68.0 41 0.00089 33.4 9.0 105 45-151 57-164 (418)
403 KOG0551 Hsp90 co-chaperone CNS 67.6 1E+02 0.0022 31.2 11.7 97 753-851 81-181 (390)
404 TIGR02508 type_III_yscG type I 67.2 49 0.0011 26.6 7.5 48 763-816 49-96 (115)
405 KOG0276 Vesicle coat complex C 67.1 57 0.0012 35.7 10.6 132 19-183 616-747 (794)
406 COG4455 ImpE Protein of avirul 66.3 15 0.00033 34.2 5.6 116 827-946 5-124 (273)
407 KOG2908 26S proteasome regulat 66.2 90 0.002 31.6 11.0 53 799-851 86-143 (380)
408 COG5191 Uncharacterized conser 65.1 9.2 0.0002 37.5 4.2 73 855-928 104-177 (435)
409 TIGR03504 FimV_Cterm FimV C-te 64.2 14 0.00031 24.4 3.7 25 22-46 4-28 (44)
410 PF12862 Apc5: Anaphase-promot 61.8 41 0.00089 27.0 6.9 53 799-851 9-69 (94)
411 KOG2422 Uncharacterized conser 61.5 2.6E+02 0.0056 30.9 16.4 207 728-938 248-495 (665)
412 PF10366 Vps39_1: Vacuolar sor 59.9 67 0.0015 26.6 7.9 27 54-80 41-67 (108)
413 KOG2063 Vacuolar assembly/sort 59.7 3.7E+02 0.008 32.1 21.2 28 18-45 505-532 (877)
414 PF08424 NRDE-2: NRDE-2, neces 59.4 2.2E+02 0.0048 29.5 18.5 118 735-854 48-185 (321)
415 KOG0403 Neoplastic transformat 58.8 2.5E+02 0.0054 29.8 27.7 62 440-502 512-573 (645)
416 PHA02537 M terminase endonucle 58.8 52 0.0011 31.6 7.9 23 906-928 191-213 (230)
417 COG3947 Response regulator con 58.5 2E+02 0.0044 28.6 18.7 59 826-885 282-340 (361)
418 PF12862 Apc5: Anaphase-promot 57.3 56 0.0012 26.2 7.0 53 834-886 9-69 (94)
419 PF14561 TPR_20: Tetratricopep 57.0 41 0.0009 26.7 6.0 63 645-707 19-82 (90)
420 PF00244 14-3-3: 14-3-3 protei 57.0 1.6E+02 0.0035 28.8 11.3 58 652-709 5-63 (236)
421 smart00101 14_3_3 14-3-3 homol 56.8 2E+02 0.0044 28.2 13.6 47 874-920 144-198 (244)
422 PF04781 DUF627: Protein of un 56.3 1.1E+02 0.0024 25.3 8.2 102 795-922 3-107 (111)
423 PRK15180 Vi polysaccharide bio 56.2 2.8E+02 0.0061 29.6 31.4 121 378-502 300-421 (831)
424 KOG0128 RNA-binding protein SA 55.1 4E+02 0.0086 31.1 32.2 115 805-920 443-561 (881)
425 KOG4077 Cytochrome c oxidase, 55.1 87 0.0019 26.5 7.4 57 422-479 69-125 (149)
426 PF00637 Clathrin: Region in C 54.9 7.6 0.00017 34.4 1.8 53 24-76 14-66 (143)
427 PF13929 mRNA_stabil: mRNA sta 54.3 2.4E+02 0.0052 28.3 17.3 63 399-461 199-262 (292)
428 KOG4077 Cytochrome c oxidase, 53.9 82 0.0018 26.6 7.1 41 75-115 72-112 (149)
429 KOG0686 COP9 signalosome, subu 53.1 3E+02 0.0065 29.0 13.6 91 124-216 152-253 (466)
430 KOG0686 COP9 signalosome, subu 52.5 3E+02 0.0066 28.9 14.7 63 53-115 151-215 (466)
431 PF00637 Clathrin: Region in C 51.8 8.9 0.00019 34.0 1.7 52 130-181 15-66 (143)
432 PF11846 DUF3366: Domain of un 51.5 33 0.00071 32.3 5.6 32 855-886 141-172 (193)
433 KOG4279 Serine/threonine prote 51.2 4.3E+02 0.0093 30.3 14.2 189 36-256 182-395 (1226)
434 smart00101 14_3_3 14-3-3 homol 50.9 2.5E+02 0.0055 27.5 16.0 15 836-850 184-198 (244)
435 PF09670 Cas_Cas02710: CRISPR- 50.4 2E+02 0.0044 30.6 11.7 53 763-816 141-197 (379)
436 PF04781 DUF627: Protein of un 50.1 1.5E+02 0.0032 24.6 8.7 23 760-782 3-25 (111)
437 PF13934 ELYS: Nuclear pore co 50.1 1.5E+02 0.0032 28.8 9.7 99 61-170 87-185 (226)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 50.0 1.2E+02 0.0026 26.1 8.2 77 769-850 49-126 (126)
439 KOG0292 Vesicle coat complex C 48.7 1.1E+02 0.0023 35.5 9.3 174 697-921 607-781 (1202)
440 KOG1497 COP9 signalosome, subu 48.5 3.1E+02 0.0066 27.8 14.6 57 758-814 108-170 (399)
441 PF09670 Cas_Cas02710: CRISPR- 48.2 1.1E+02 0.0024 32.6 9.3 55 797-852 140-198 (379)
442 COG4976 Predicted methyltransf 48.0 40 0.00086 31.9 5.1 52 764-816 6-57 (287)
443 COG3947 Response regulator con 47.5 3E+02 0.0066 27.5 15.9 59 159-218 281-339 (361)
444 COG5159 RPN6 26S proteasome re 47.1 3E+02 0.0065 27.3 22.3 31 444-474 10-40 (421)
445 KOG2062 26S proteasome regulat 46.2 5.2E+02 0.011 29.8 45.5 153 690-851 508-675 (929)
446 KOG4814 Uncharacterized conser 46.0 2.5E+02 0.0054 31.4 11.1 122 757-885 358-486 (872)
447 PF10516 SHNi-TPR: SHNi-TPR; 45.9 44 0.00096 21.3 3.6 26 860-885 3-28 (38)
448 COG5187 RPN7 26S proteasome re 45.2 3.2E+02 0.007 27.1 13.1 95 754-850 116-219 (412)
449 COG5187 RPN7 26S proteasome re 45.2 3.2E+02 0.007 27.1 11.5 119 643-761 110-235 (412)
450 smart00386 HAT HAT (Half-A-TPR 45.0 45 0.00097 19.6 3.7 28 521-548 1-28 (33)
451 KOG0128 RNA-binding protein SA 44.8 5.7E+02 0.012 29.9 35.9 203 121-326 112-341 (881)
452 COG2912 Uncharacterized conser 44.6 12 0.00027 36.4 1.5 66 893-958 181-247 (269)
453 PF10255 Paf67: RNA polymerase 44.2 1.2E+02 0.0025 32.4 8.5 55 726-780 130-191 (404)
454 KOG2908 26S proteasome regulat 44.1 3.7E+02 0.0081 27.5 11.6 52 730-781 87-143 (380)
455 PF04762 IKI3: IKI3 family; I 44.0 6.9E+02 0.015 30.6 17.7 22 23-47 700-721 (928)
456 KOG1463 26S proteasome regulat 43.9 3.8E+02 0.0081 27.5 21.0 284 444-798 11-328 (411)
457 PF04190 DUF410: Protein of un 43.6 3.5E+02 0.0075 27.0 18.9 25 156-180 89-113 (260)
458 PF10255 Paf67: RNA polymerase 43.4 4.4E+02 0.0096 28.2 16.2 62 123-184 123-191 (404)
459 PF04762 IKI3: IKI3 family; I 43.4 5.2E+02 0.011 31.6 14.8 111 755-883 814-926 (928)
460 KOG0890 Protein kinase of the 43.3 9.8E+02 0.021 32.2 43.9 613 122-800 1241-1919(2382)
461 COG4941 Predicted RNA polymera 43.2 1.6E+02 0.0034 29.9 8.5 117 767-886 270-393 (415)
462 KOG4814 Uncharacterized conser 42.4 1.8E+02 0.004 32.3 9.6 89 728-817 364-457 (872)
463 PF07575 Nucleopor_Nup85: Nup8 42.4 5.7E+02 0.012 29.2 20.1 76 422-499 390-465 (566)
464 KOG1839 Uncharacterized protei 41.8 3.9E+02 0.0085 33.0 13.0 159 690-848 939-1124(1236)
465 PF15297 CKAP2_C: Cytoskeleton 41.5 2.7E+02 0.0059 28.7 10.1 64 804-869 119-186 (353)
466 PF12968 DUF3856: Domain of Un 40.8 2.2E+02 0.0048 24.0 13.0 61 790-850 57-127 (144)
467 cd08819 CARD_MDA5_2 Caspase ac 40.8 1.7E+02 0.0038 23.0 6.7 61 36-102 21-81 (88)
468 PF10516 SHNi-TPR: SHNi-TPR; 39.1 74 0.0016 20.3 3.8 27 825-851 3-29 (38)
469 KOG3824 Huntingtin interacting 38.9 11 0.00023 36.9 0.2 56 901-956 124-180 (472)
470 KOG4521 Nuclear pore complex, 38.2 5.5E+02 0.012 31.4 12.9 178 688-886 925-1131(1480)
471 PF11846 DUF3366: Domain of un 38.0 87 0.0019 29.5 6.1 42 808-851 131-172 (193)
472 PF14689 SPOB_a: Sensor_kinase 37.7 86 0.0019 22.8 4.6 29 682-710 22-50 (62)
473 COG2256 MGS1 ATPase related to 37.4 5.3E+02 0.012 27.4 14.0 51 717-767 245-298 (436)
474 PF04348 LppC: LppC putative l 37.2 11 0.00024 42.0 0.0 92 757-848 28-123 (536)
475 cd00280 TRFH Telomeric Repeat 36.9 2.5E+02 0.0054 25.9 8.0 21 130-150 119-139 (200)
476 KOG0292 Vesicle coat complex C 36.8 1.9E+02 0.004 33.7 8.9 124 4-148 626-753 (1202)
477 PF11817 Foie-gras_1: Foie gra 36.4 1.6E+02 0.0034 29.1 7.9 23 828-850 183-205 (247)
478 PF14689 SPOB_a: Sensor_kinase 36.2 82 0.0018 22.9 4.3 30 787-816 22-51 (62)
479 COG0735 Fur Fe2+/Zn2+ uptake r 34.9 1.8E+02 0.0039 25.8 7.1 62 39-101 8-69 (145)
480 PF11848 DUF3368: Domain of un 34.0 1.5E+02 0.0033 20.1 5.1 31 63-93 13-43 (48)
481 COG4941 Predicted RNA polymera 33.7 5.4E+02 0.012 26.4 13.1 118 732-852 270-394 (415)
482 COG0735 Fur Fe2+/Zn2+ uptake r 33.2 1.4E+02 0.003 26.5 6.2 64 3-67 7-70 (145)
483 PF15297 CKAP2_C: Cytoskeleton 32.8 4.1E+02 0.0089 27.5 9.8 67 766-834 115-186 (353)
484 PF06957 COPI_C: Coatomer (COP 32.8 1.2E+02 0.0025 32.5 6.4 19 798-816 214-232 (422)
485 COG3914 Spy Predicted O-linked 32.6 1.8E+02 0.004 32.1 7.8 102 798-902 77-185 (620)
486 PF02184 HAT: HAT (Half-A-TPR) 32.2 1E+02 0.0022 18.8 3.4 21 804-826 3-23 (32)
487 COG3107 LppC Putative lipoprot 31.7 7.2E+02 0.016 27.5 11.7 78 760-838 70-151 (604)
488 KOG2659 LisH motif-containing 31.6 4.3E+02 0.0094 25.4 9.2 24 478-501 70-93 (228)
489 cd00280 TRFH Telomeric Repeat 31.4 3.3E+02 0.0071 25.2 7.9 20 797-816 120-139 (200)
490 smart00777 Mad3_BUB1_I Mad3/BU 31.1 3.4E+02 0.0074 23.3 9.2 42 876-917 81-123 (125)
491 KOG0687 26S proteasome regulat 29.9 6.2E+02 0.013 25.9 15.6 196 472-761 22-224 (393)
492 COG4259 Uncharacterized protei 29.7 3E+02 0.0065 22.2 6.9 50 844-895 58-107 (121)
493 PF11817 Foie-gras_1: Foie gra 29.5 5.6E+02 0.012 25.3 14.6 60 790-849 180-244 (247)
494 PF10475 DUF2450: Protein of u 29.0 5.1E+02 0.011 26.4 10.3 154 18-182 61-222 (291)
495 KOG2297 Predicted translation 28.1 6.4E+02 0.014 25.5 18.1 18 474-491 323-340 (412)
496 PRK14700 recombination factor 27.6 6.7E+02 0.014 25.5 14.1 150 770-921 42-229 (300)
497 KOG2066 Vacuolar assembly/sort 27.4 1E+03 0.023 27.7 30.7 101 409-519 363-467 (846)
498 PF04090 RNA_pol_I_TF: RNA pol 27.3 2.5E+02 0.0053 26.5 6.8 59 21-79 45-103 (199)
499 KOG1497 COP9 signalosome, subu 27.1 6.9E+02 0.015 25.5 16.6 61 614-674 105-170 (399)
500 KOG2034 Vacuolar sorting prote 26.0 1.2E+03 0.025 27.8 29.7 75 59-147 365-441 (911)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-72 Score=656.33 Aligned_cols=679 Identities=19% Similarity=0.287 Sum_probs=597.7
Q ss_pred CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 048794 48 FVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTI 127 (967)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (967)
..|+...++.++..+.+.|++++|..+|+.|...|++|+..+|..++.+|.+.+.++.+..++..+.+.+..++..+++.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 048794 128 CIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGN 207 (967)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 207 (967)
++..|++.|+++.|.++|++|. +||..+|+.++.+|.+.|++++|.++|++|...|+.||..||+.++.+|...++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 9999999999999999999997 478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 048794 208 IEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNN 287 (967)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 287 (967)
+..+.+++..+.+.|+.|+..+++.++.+|++.|++++|..+|++|.. ||..+|+.++.+|++.|++++|+.+|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999974 5889999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048794 288 MEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDS 367 (967)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 367 (967)
|...|+.||..||..++.+|.+.|+.+.+.+++..+.+.|..||..+|+.++.+|.+.|++++|.++|+.|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999988888888888888888888888888888888888888888888888775 3567
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGL 447 (967)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 447 (967)
.+|+.++.+|++.|++++|.++|+.|.+.|+.||..+++.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 77888888888888888888888888777777888888888888888888888888887777777777777788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHH
Q 048794 448 GKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAI 527 (967)
Q Consensus 448 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 527 (967)
++.|++++|.++|++|.+ +|..+|+.++.+|+..|+.++|..+|++|.. ++.||..++..++.++.+.|..+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 877888888777777753 4566777777777777777777777777764 36677777777777777777777777
Q ss_pred HHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcC
Q 048794 528 WFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
+++..+.+
T Consensus 510 ~i~~~~~~------------------------------------------------------------------------ 517 (857)
T PLN03077 510 EIHAHVLR------------------------------------------------------------------------ 517 (857)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 66655543
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN 687 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (967)
.+..++..+++.++.+|++.|+.++|..+|+.+ .||..+|+
T Consensus 518 ----------------------------------~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n 558 (857)
T PLN03077 518 ----------------------------------TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWN 558 (857)
T ss_pred ----------------------------------hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHH
Confidence 234556667788889999999999999998876 47999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhcHHHHHHHHHcC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLV-SGGFSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 766 (967)
.++.+|.+.|+.++|+++|++|...|+.||..++..++.+|.+.|..++|.++|+.|. ..+..|+..+|..++++|++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999 558899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHY 845 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 845 (967)
|++++|.+++++|. +.||..+|..|+.+|...|+.+.|....+++.+ ..|+ ...|..|.++|+..|++++|.++
T Consensus 639 G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 639 GKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred CCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 99999999999984 579999999999999999999999999999988 5776 56777888999999999999999
Q ss_pred HHHHHHCCCCCCHH
Q 048794 846 FEELKLNGLDADTI 859 (967)
Q Consensus 846 ~~~~~~~~~~~~~~ 859 (967)
.+.|.+.|+++++.
T Consensus 714 r~~M~~~g~~k~~g 727 (857)
T PLN03077 714 RKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHcCCCCCCC
Confidence 99999988887664
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-71 Score=651.55 Aligned_cols=678 Identities=19% Similarity=0.276 Sum_probs=639.0
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048794 14 NRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSAL 93 (967)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (967)
+++...++.++.++.+.|++++|..+|+.|.+.|..|+..+|..++..+...+....+..++..+.+.+..++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 048794 94 MVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRL 173 (967)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 173 (967)
+..|++.|+++.|..+|++|. +||+.+|+.++..|++.|++++|..+|++|...|+.||..+|+.++.+|...+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999996 4789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 174 DQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 174 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
..+.+++..|.+.|..|+..+++.|+.+|++.|+++.|..+|+.|. .+|..+|+.++.+|++.|++++|+++|.+|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 468899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcc
Q 048794 254 RGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVV 333 (967)
Q Consensus 254 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 333 (967)
...|+.||..+|+.++.+|.+.|+.+.+.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|.. |+..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 6899
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048794 334 SCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLY 413 (967)
Q Consensus 334 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 413 (967)
+|+.++.+|.+.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048794 414 KADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMK 493 (967)
Q Consensus 414 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (967)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|..++.+|++.|+.+.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999975 6888999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCC
Q 048794 494 MLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGT 573 (967)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 573 (967)
++..+...++.++..+++.++..|.++|++++|..+|+.+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---------------------------------------- 550 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---------------------------------------- 550 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----------------------------------------
Confidence 9999999999999999999999999999999998887654
Q ss_pred CcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 048794 574 RAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNY 653 (967)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 653 (967)
.++..+|+.
T Consensus 551 -----------------------------------------------------------------------~~d~~s~n~ 559 (857)
T PLN03077 551 -----------------------------------------------------------------------EKDVVSWNI 559 (857)
T ss_pred -----------------------------------------------------------------------CCChhhHHH
Confidence 234566888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcC
Q 048794 654 LIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMS-FRGCKPNTISHNIVISGLVKSN 732 (967)
Q Consensus 654 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 732 (967)
++.+|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|++|. ..|+.|+..+|..++.++.+.|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 888889999999999999999999999999999999999999999999999999998 6788999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFK 812 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 812 (967)
++++|.+++++|. ..|+..+|..++.+|...|+.+.+....+++.+.. +.+...|..+.+.|+..|+|++|.++.+
T Consensus 640 ~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 640 KLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred CHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999998873 57888899999999999999999999998888853 2355678888889999999999999999
Q ss_pred HHHhCCCCCCH
Q 048794 813 QMIKGGIRPDL 823 (967)
Q Consensus 813 ~~~~~~~~p~~ 823 (967)
.|.+.|+.++.
T Consensus 716 ~M~~~g~~k~~ 726 (857)
T PLN03077 716 TMRENGLTVDP 726 (857)
T ss_pred HHHHcCCCCCC
Confidence 99998888764
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-59 Score=535.28 Aligned_cols=514 Identities=19% Similarity=0.318 Sum_probs=468.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGF-VLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALM 94 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 94 (967)
+...|..++..+.+.|++++|+.+|+.|.+.|+ .++...++.++..+.+.|...+|..+++.|.. |+..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 788999999999999999999999999999986 46778888899999999999999999998853 9999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 048794 95 VAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLD 174 (967)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 174 (967)
.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 175 QAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVA--DGYAADVVTYTIFVDALCKVGNVEEAFSILDL 252 (967)
Q Consensus 175 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (967)
+|.++|++|...|+.||..+|+.++.+|++.|++++|.+++.+|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 57899999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCc
Q 048794 253 MRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNV 332 (967)
Q Consensus 253 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 332 (967)
|.+.|+.|+..+|+.++.+|++.|++++|..+|++|...|+.||..+|..++.+|++.|+.++|.++++.|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048794 333 VSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTL 412 (967)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 412 (967)
.+|+.++.+|.+.|++++|.++|+.|...|+.|+..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhCCCC
Q 048794 413 YKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGK----E-------------------GQVQKAIELFEGMTDHGCF 469 (967)
Q Consensus 413 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~ 469 (967)
++.|+++.|.+++..|.+.|+.||..+|++++..|.+ . +..+.|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999876542 0 1234566666677766666
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 470 PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
||..+|..++.+++..+..+.+..+++.+...+..|+..+|+.++.++.+. .++|..+|++|.+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 776677666666666666666666666666555556666666666665321 2456666666654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-58 Score=526.66 Aligned_cols=431 Identities=22% Similarity=0.381 Sum_probs=405.9
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 83 IKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGL-RPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYT 161 (967)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (967)
..++...|..++..+++.|++++|.++|++|...++ +++...+..++..|.+.|.+++|..+|+.|.. |+..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 466777888999999999999999999999998885 56777788899999999999999999998874 8999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC
Q 048794 162 VLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVG 241 (967)
Q Consensus 162 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (967)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|...|+.||..+|+.++.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhhcCChhhHHHH
Q 048794 242 NVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEI--LGVQPTAYTYILFIDYYGKSADPGKALET 319 (967)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 319 (967)
++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|..++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 57899999999999999999999999999
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048794 320 FEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCE 399 (967)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (967)
|+.|.+.++.|+..+|+.++.+|.+.|++++|..+|+.|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 048794 400 PDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLL 479 (967)
Q Consensus 400 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (967)
||..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|..++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 048794 480 HCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGL 517 (967)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (967)
.+|++.|+++.|.+++..|.+.++.|+..+++.++..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999887544
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8e-53 Score=514.56 Aligned_cols=873 Identities=12% Similarity=0.041 Sum_probs=748.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMV 95 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 95 (967)
+...+....+.+...|++++|...|++..+..+. ++..+..+..++...|++++|+..++++.+.+. ++......+..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 98 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLAR 98 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHHHH
Confidence 5666778889999999999999999999998755 888999999999999999999999999998764 45566677788
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 048794 96 AAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQ 175 (967)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 175 (967)
.+...|++++|...+.+......+.....+..+...+...|++++|...|+++.+.. +.+...+..++..+...|++++
T Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHH
Confidence 899999999999999876533434566778888899999999999999999998764 4567788899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048794 176 AKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRG 255 (967)
Q Consensus 176 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 255 (967)
|.++++++... .+++...+..+...+...|++++|...++..+... +.+...+..++..+...|++++|...++.+.+
T Consensus 178 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 178 ARALIDEVLTA-DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHh-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999875 34567788888889999999999999999998775 45778888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccH
Q 048794 256 EGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSC 335 (967)
Q Consensus 256 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 335 (967)
.... +...+......+...|++++|...++.+...+. .....+..+...+...|+++.|...++++..... .+...+
T Consensus 256 ~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 332 (899)
T TIGR02917 256 KAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQAR 332 (899)
T ss_pred hCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 6543 444444455566788999999999999887652 2334555667778899999999999999887632 245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048794 336 NASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKA 415 (967)
Q Consensus 336 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 415 (967)
..+...+...|++++|...+..+.... +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhC
Confidence 777888999999999999999998764 5567788889999999999999999999998764 34566778888899999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 416 DRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKML 495 (967)
Q Consensus 416 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (967)
|++++|...++.+.+..+. .......++..+.+.|++++|..+++.+... .+++..++..+..++...|++++|.+.+
T Consensus 411 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999876543 3455666788899999999999999999875 4667888999999999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCc
Q 048794 496 YEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRA 575 (967)
Q Consensus 496 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 575 (967)
+++.+.+ +.+...+..++..+...|++++|...|+++.+..|.+..++..++..+...|++++|...+++++...
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 563 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---- 563 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 9998875 34667778888999999999999999999999899999999999999999999999999999877654
Q ss_pred chhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 048794 576 ERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLI 655 (967)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 655 (967)
|.+......++..+...|++++|...++++... .+.+...+..++
T Consensus 564 ---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 608 (899)
T TIGR02917 564 ---------------------------------PQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLG 608 (899)
T ss_pred ---------------------------------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 223344567889999999999999999998654 356778899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 048794 656 HGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSID 735 (967)
Q Consensus 656 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 735 (967)
..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|...|+++.... +.+..++..++..+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 3466778889999999999999999999999874 456778899999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048794 736 KAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
+|..+++.+.... +.+...+..++..+...|++++|++.|+++...+ |+..++..++.++...|++++|++.+++++
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998874 4566678889999999999999999999999864 555778889999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 816 KGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 816 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
+. .+.+..+++.++.+|...|++++|..+|+++++.. ++++.++..+++++...|+ .+|+..++++.+. .+.++..
T Consensus 764 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~ 839 (899)
T TIGR02917 764 KT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAI 839 (899)
T ss_pred Hh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHH
Confidence 85 23457889999999999999999999999999864 5678889999999999999 8899999999974 4445688
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchh
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKH 949 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~ 949 (967)
+..++.++...|++++|.++++++++.+|+++.. .+++.+|...|++++|..-+
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8899999999999999999999999999999988 69999999999999988733
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-49 Score=485.08 Aligned_cols=848 Identities=12% Similarity=0.030 Sum_probs=723.7
Q ss_pred CCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHH
Q 048794 13 INR-DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYS 91 (967)
Q Consensus 13 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 91 (967)
+.| +...+..+..++.+.|++++|...++++...++. +...+..+..++...|++++|...+........+.+...+.
T Consensus 51 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 129 (899)
T TIGR02917 51 KDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLA 129 (899)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHH
Confidence 344 7788889999999999999999999999998865 56667788899999999999999998775434445556777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048794 92 ALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAG 171 (967)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 171 (967)
.+...+...|+++.|...|+++.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|
T Consensus 130 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 207 (899)
T TIGR02917 130 LRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLG 207 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcC
Confidence 78888899999999999999998765 4567788889999999999999999999998764 567888999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 172 RLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILD 251 (967)
Q Consensus 172 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (967)
++++|.+.|++..... +.+..++..+...+...|++++|...++.+.+... .+..........+...|++++|...|+
T Consensus 208 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (899)
T TIGR02917 208 NIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQ 285 (899)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999998763 45667788888899999999999999999987643 344445555666778999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 048794 252 LMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPN 331 (967)
Q Consensus 252 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 331 (967)
.+.+.+.. ....+..+...+...|++++|...++.+.... +.+......+...+...|+++.|...+..+..... .+
T Consensus 286 ~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~ 362 (899)
T TIGR02917 286 DALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DD 362 (899)
T ss_pred HHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CC
Confidence 99886533 34445566677888999999999999988764 44566777888899999999999999999987642 35
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048794 332 VVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDT 411 (967)
Q Consensus 332 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 411 (967)
...+..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...++.+.+.. +........++..
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 440 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHH
Confidence 6678888899999999999999999998764 4566778888889999999999999999998764 2234456677888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048794 412 LYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLA 491 (967)
Q Consensus 412 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 491 (967)
+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998754 3477889999999999999999999999998863 45677788889999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhc
Q 048794 492 MKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQI 571 (967)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 571 (967)
.+.++.+...+ +.+...+..++..+...|++++|...++++.+..|.+...+..++..+...|++++|+..+++++...
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999998875 34677888899999999999999999999999889999999999999999999999999999876543
Q ss_pred CCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHH
Q 048794 572 GTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMY 651 (967)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 651 (967)
+.+...+..++..+...|++++|...|.+++... +.+...+
T Consensus 598 -------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 638 (899)
T TIGR02917 598 -------------------------------------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALAL 638 (899)
T ss_pred -------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 3334456678899999999999999999987653 4567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
..++..+...|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..++.++...
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHC
Confidence 899999999999999999999999864 3467788999999999999999999999998875 55677788889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
|++++|...|+++....+ +..++..++.++.+.|++++|.+.++++.+.. +.+..++..++.+|...|++++|+..|
T Consensus 717 g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999998743 33677788999999999999999999999864 447789999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 812 KQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 812 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
+++++.+ +++..++..++.++...|+ .+|+.+++++++.. +.++..+..++.++...|++++|.+.++++++. .+.
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~ 869 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-APE 869 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Confidence 9999852 3457889999999999999 88999999999853 446677888999999999999999999999975 344
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 892 DLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
+..++..++.++.+.|++++|++.++++++
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 789999999999999999999999998763
No 7
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-53 Score=487.64 Aligned_cols=470 Identities=19% Similarity=0.333 Sum_probs=448.8
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 048794 51 NAYSYNGFIHFILQSGFCREALAVYKRVVSEG-IKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICI 129 (967)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (967)
+...|+.++..+.+.|++++|+.+|++|...+ ..|+..+|+.++.+|.+.++++.+..++..|.+.|+.||..+++.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 55689999999999999999999999998764 68999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIE 209 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 209 (967)
..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|...|+.|+..+|..++.+|...|+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999974 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 048794 210 VVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNME 289 (967)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 289 (967)
.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|..+|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999974 599999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048794 290 ILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVT 369 (967)
Q Consensus 290 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 369 (967)
..|+.||..||..++.+|++.|+++.|.+++..|.+.|+.|+..+++.++.+|.+.|++++|.++|+.|. .+|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 468899
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 048794 370 YNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKD-MKLAPTVVTYNTLLSGLG 448 (967)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 448 (967)
|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|++++.+|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999975 689999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHH
Q 048794 449 KEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIW 528 (967)
Q Consensus 449 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 528 (967)
+.|++++|.+++++| +..|+..+|..++.+|...|+++.|..+++.+.+.+ +.+..+|..++..|.+.|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999998876 467999999999999999999999999999997765 2356789999999999999999999
Q ss_pred HHHHHHhh
Q 048794 529 FFHQMRKW 536 (967)
Q Consensus 529 ~~~~~~~~ 536 (967)
+++.|.+.
T Consensus 550 v~~~m~~~ 557 (697)
T PLN03081 550 VVETLKRK 557 (697)
T ss_pred HHHHHHHc
Confidence 99999874
No 8
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-52 Score=477.96 Aligned_cols=474 Identities=21% Similarity=0.287 Sum_probs=451.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAG-FVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALM 94 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 94 (967)
+...|+.++..+.+.|++++|+.+|+.|...+ ..|+..+|+.++.++.+.++++.|..++..+.+.|+.|+..+++.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45589999999999999999999999999865 57899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 048794 95 VAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLD 174 (967)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 174 (967)
..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|..+|++|.+.|+.|+..+|+.++.+|.+.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999996 47899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 175 QAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMR 254 (967)
Q Consensus 175 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 254 (967)
.+.+++..+.+.|..||..+++.|+.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 4589999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCccc
Q 048794 255 GEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVS 334 (967)
Q Consensus 255 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 334 (967)
..|+.||..||+.++.+|++.|.+++|.+++..|.+.|+.|+..+++.++.+|++.|+++.|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974 69999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCChhhHHHHHHHHH
Q 048794 335 CNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVE-NGCEPDVIVMNTLIDTLY 413 (967)
Q Consensus 335 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 413 (967)
|+.++.+|.+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.++.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 589999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048794 414 KADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMK 493 (967)
Q Consensus 414 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (967)
+.|++++|.++++++ +..|+..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..++..|++.|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999998765 467999999999999999999999999999997643 3356789999999999999999999
Q ss_pred HHHhhccCCCCC
Q 048794 494 MLYEMTPRNCWP 505 (967)
Q Consensus 494 ~~~~~~~~~~~~ 505 (967)
+++.|.+.|+..
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999998653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-29 Score=304.47 Aligned_cols=443 Identities=11% Similarity=0.028 Sum_probs=265.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHHH------------H
Q 048794 409 IDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFP-NTVT------------F 475 (967)
Q Consensus 409 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~------------~ 475 (967)
...+...|++++|+..|++.....+. +...+..+...+.+.|++++|+..|++..+..... .... .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 44455666666666666666654322 55566666666666666666666666665542111 1111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcC
Q 048794 476 NTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDG 555 (967)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 555 (967)
......+...|++++|...+++++..+ +.+...+..++..+...|++++|+..|+++.+..|.+...+..++..+. .+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Confidence 122345667788888888888887775 2355666677777888888888888888888777777777777777664 34
Q ss_pred ChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHH
Q 048794 556 QIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLF 635 (967)
Q Consensus 556 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 635 (967)
+.++|+..++........ .+.. ..
T Consensus 433 ~~~~A~~~l~~l~~~~~~-----~~~~---------------------------------------------------~~ 456 (1157)
T PRK11447 433 SPEKALAFIASLSASQRR-----SIDD---------------------------------------------------IE 456 (1157)
T ss_pred CHHHHHHHHHhCCHHHHH-----HHHH---------------------------------------------------HH
Confidence 667777666542211000 0000 00
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 048794 636 VKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCK 715 (967)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 715 (967)
. ......+..++..+...|++++|+..|++.++..+ .+...+..++..|.+.|++++|+..|+++.... +
T Consensus 457 ~--------~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P 526 (1157)
T PRK11447 457 R--------SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-P 526 (1157)
T ss_pred H--------HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 0 00001223334444455555555555555554421 133344445555555555555555555554432 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---------hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 048794 716 PNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP---------CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP 786 (967)
Q Consensus 716 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 786 (967)
.+...+..+...+...++.++|+..++++......+.. ..+...+..+...|++++|+.+++. .+.
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 22333333333344455555555555443221111110 1223456677888888888888772 244
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
+...+..++..+.+.|++++|+..|+++++. .|+ ..++..++.+|...|++++|++.++++.+.. +.+...+..++
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la 678 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVA 678 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHH
Confidence 5567777888888888888888888888873 555 6788888888888888888888888877642 33455667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHhHHHHHHHHHhcCCHHHHHHhhcCCCc---CCCCccc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKRGI--SP---DLYTYNSLILNLGRAGMVEEARKLAGGNCF---VQPSEFV 928 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~ 928 (967)
.++...|++++|.+++++++...- +| +..++..++.++...|++++|+..+++++. +.|..|.
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 888888888888888888875311 11 124556678888888888888888888874 4455554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.4e-28 Score=296.99 Aligned_cols=660 Identities=14% Similarity=0.071 Sum_probs=376.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------------
Q 048794 94 MVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVV--------------- 158 (967)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------- 158 (967)
++.....++.+.|.+.+.++.... +.+..++..++..+.+.|+.++|.+.++++.+.. |.+..
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCch
Confidence 344455666666666666665543 3455556666666666666666666666665543 22222
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 048794 159 -TYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQV-TYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDA 236 (967)
Q Consensus 159 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (967)
....+...+...|++++|.+.|+.+...+ +|+.. ....+.......|+.++|...++.+++.. +.+...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 22334446677888888888888877543 22321 11112222234578888888888887764 3366677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhH
Q 048794 237 LCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKA 316 (967)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (967)
+...|+.++|+..++++...... +...-..........+....+...+.. .+..+........+
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~---------------~l~~~p~~~~~~~A 254 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQK---------------YLQVFSDGDSVAAA 254 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHH---------------HHHHCCCchHHHHH
Confidence 88888888888888887654210 010001111111111112222222222 22222222233445
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048794 317 LETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN 396 (967)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (967)
...+.........|... .......+...|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|+++.+.
T Consensus 255 ~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555544332222221 1233455677888888888888887753 446777778888888888888888888888765
Q ss_pred CCCCC-hhhH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 397 GCEPD-VIVM------------NTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGM 463 (967)
Q Consensus 397 ~~~~~-~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 463 (967)
..... ...+ ......+.+.|++++|...|+++....+ .+...+..+...+...|++++|++.|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 32111 1111 1223455677788888888888776543 25566666777777788888888888887
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCC--------CCHHHHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 464 TDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCW--------PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
.+.. +.+...+..+...+. .++.++|...++.+...... .....+..++..+...|++++|+..|+++.+
T Consensus 412 L~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 412 LRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7652 334555666666553 45677777777665432100 0011233344555566666666666666666
Q ss_pred hcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcch
Q 048794 536 WLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVV 615 (967)
Q Consensus 536 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (967)
..|.++..+..++..|...|++++|+..+++++...
T Consensus 490 ~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-------------------------------------------- 525 (1157)
T PRK11447 490 LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-------------------------------------------- 525 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------------------------
Confidence 666666666666666666666666666655544322
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK 695 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (967)
+.++..+..++..+...++.++|+..++.+......++...+
T Consensus 526 -----------------------------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l--------- 567 (1157)
T PRK11447 526 -----------------------------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL--------- 567 (1157)
T ss_pred -----------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH---------
Confidence 222333333333444555555665555544321111110000
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 048794 696 SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
...+. ..........+...|+.++|..+++. .+.+...+..++..+.+.|++++|+..
T Consensus 568 ----------~~~l~-------~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 568 ----------AQRLQ-------SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred ----------HHHHh-------hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 00000 00122344556666777777766651 234444566677777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048794 776 FEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL 854 (967)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 854 (967)
|+++++.. +.+...+..++.+|...|++++|++.++++.+ ..|+ ......++.++...|++++|.+++++++....
T Consensus 626 y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 626 YQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 77777653 22556777777777777777777777777665 2444 45566677777777777777777777765321
Q ss_pred --CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 855 --DA---DTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 855 --~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+| +...+..++.++...|++++|+..|++++
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 12344556777777777777777777775
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.3e-27 Score=273.15 Aligned_cols=686 Identities=11% Similarity=0.007 Sum_probs=407.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 048794 206 GNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVF 285 (967)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 285 (967)
|++++|...|++.++..+. +..++..+...|.+.|++++|+..+++..+.. |+-..+..++..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHH
Confidence 5555555555555544322 34455555555555555555555555555542 2222222222111 5555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHH--------HhhcCChhhHHHHHHHHHHcCCCCCcccHHHH-HHHHHhcCCHHHHHHHHH
Q 048794 286 NNMEILGVQPTAYTYILFIDY--------YGKSADPGKALETFEKMKIRGIVPNVVSCNAS-LYSLAETGRIGEAKTIFN 356 (967)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~ 356 (967)
+++.... +.+...+..+... |.+. +.+...++ .......|...+.... ...|.+.|++++|+.++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 5555442 2222333333332 3333 22333332 2222122223333333 556666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 048794 357 GLKNSGFAPDSVTYNMMMKCYSK-VGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLA- 434 (967)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 434 (967)
.+.+.+ +.+......+..+|.. .++ +.+..++.. ....+......++..+.+.|+.++|...++++......
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 666654 3334444555555555 244 555555332 12245556666666666777777777666665433211
Q ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHH
Q 048794 435 PTVVTYNTLLSGLGKEGQVQ-KAIELFEGMTDHGCFPNT-VTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNT 512 (967)
Q Consensus 435 ~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 512 (967)
|...++... +.+.+... .|..-+.+ . ..++. .....++..+.+.++++-+.++. ... |.......
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~ 347 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLL-ATL-----PANEMLEE 347 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHh-cCC-----CcchHHHH
Confidence 333333322 22222221 11111111 0 01111 11122345555666666444442 111 11111111
Q ss_pred HHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhh-cCCCcchhhHhhhhhhhcccC
Q 048794 513 IIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQ-IGTRAERQFWQDLVGGILTVA 591 (967)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 591 (967)
-.......+...++...+..+.+..|.+......+.-...+.|+..+|.++++.+... .....+......++...-..+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 1111223355566666666666656666666666666667777777777777666552 111111111112222121221
Q ss_pred CCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHhcCChHHHH
Q 048794 592 GPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGV-TS--TLEMYNYLIHGLLEVHATEMGL 668 (967)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~ 668 (967)
........... +.+.+.... -.-.|+..++...+..+....+. +. +...+..++..+.. ++.++|+
T Consensus 428 ~~~~~~~~~~l----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 428 YLATPAKVAIL----SKPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred cccchHHHHHh----ccccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 11111100000 000000000 11133443434344333333332 44 67788888888776 8899999
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048794 669 DLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGG 748 (967)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 748 (967)
..+.+.... .|+......++..+...|++++|+..|+++... +|+...+..++.++...|++++|...+++++...
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988888876 466555555566667899999999999998765 4555567778888999999999999999999874
Q ss_pred CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 048794 749 FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYS 827 (967)
Q Consensus 749 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~ 827 (967)
+.....+..++......|++++|+..|+++++. .|+...|..++.++.+.|++++|+..|++++. ..|+ ...+.
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~ 647 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQA 647 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 333334444455556679999999999999986 56778999999999999999999999999999 4676 67889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhc
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRA 906 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 906 (967)
.++.++...|++++|+..++++++.. +.++..+..++.++...|++++|+..++++++ ..|+. .+....++...+.
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHH
Confidence 99999999999999999999999853 44778899999999999999999999999996 55665 8888999999999
Q ss_pred CCHHHHHHhhcCCCcCCCCccccccceeeeccCCCccc
Q 048794 907 GMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATS 944 (967)
Q Consensus 907 g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~ 944 (967)
.++++|.+-+++....+|....-.-.+.++...+++-+
T Consensus 725 ~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~~~~~~~~ 762 (987)
T PRK09782 725 FNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNVGG 762 (987)
T ss_pred HHHHHHHHHHHHHhhcCccchhccccchHhhhcccccC
Confidence 99999999999999999999932688888888888744
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.8e-27 Score=271.87 Aligned_cols=641 Identities=13% Similarity=0.025 Sum_probs=450.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhH
Q 048794 237 LCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKA 316 (967)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (967)
+...|++++|+..|+...+..+. +..++..+...+...|+.++|...+++..+.. |+...+..++..+ ++.++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhH
Confidence 34559999999999999988655 58888999999999999999999999998874 4444444433222 888999
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChhHHH
Q 048794 317 LETFEKMKIRGIVPNVVSCNASLYS--------LAETGRIGEAKTIFNGLKNSGFAPDSVTYNMM-MKCYSKVGQVDEAV 387 (967)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~ 387 (967)
..+++++...... +..++..+... |.+. ++|...++ .......|+..+.... .+.|...++++.|+
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999887322 23334444333 5555 45555554 3333334455555544 88999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 388 TLLSEMVENGCEPDVIVMNTLIDTLYK-ADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDH 466 (967)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 466 (967)
.++..+.+.+ +.+......+..+|.. .++ +.+..+++. .+..+...+..++..+.+.|+.++|...++++...
T Consensus 203 ~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999999986 3445556677777777 466 777777553 23357888899999999999999999999998764
Q ss_pred CCC-CcHHHHHHHHHHHHhcCCHH-HHHHHHHhhccCCCCCC-HHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhH
Q 048794 467 GCF-PNTVTFNTLLHCLCKNEEVD-LAMKMLYEMTPRNCWPD-VLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHIT 543 (967)
Q Consensus 467 ~~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 543 (967)
... |+..++..++. +.+... .|..-+.. .. .++ ......++..+.+.++++.+..+ ....|.++.
T Consensus 277 ~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~- 344 (987)
T PRK09782 277 FTTDAQEKSWLYLLS---KYSANPVQALANYTV--QF--ADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEM- 344 (987)
T ss_pred ccCCCccHHHHHHHH---hccCchhhhccchhh--hh--HHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchH-
Confidence 322 55555544432 333322 22222222 11 111 12223346678888888866544 333344442
Q ss_pred HHhHHHHH--HhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHH
Q 048794 544 LCTLLPGV--VKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKL 621 (967)
Q Consensus 544 ~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 621 (967)
. ..+.+ ...+...++.......... .|.+......+...
T Consensus 345 ~--~~r~~~~~~~~~~~~~~~~~~~~y~~-------------------------------------~~~~~~~l~q~~~~ 385 (987)
T PRK09782 345 L--EERYAVSVATRNKAEALRLARLLYQQ-------------------------------------EPANLTRLDQLTWQ 385 (987)
T ss_pred H--HHHHhhccccCchhHHHHHHHHHHhc-------------------------------------CCCCHHHHHHHHHH
Confidence 2 22222 2345556665555544333 24455555666677
Q ss_pred HHhhccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCC---hHHHH-------------------------HHHH
Q 048794 622 FCRQKKALAAKDLFVKFTENLG-VTSTLEMYNYLIHGLLEVHA---TEMGL-------------------------DLFT 672 (967)
Q Consensus 622 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~A~-------------------------~~~~ 672 (967)
..++|+..+|..+|+......+ ...+......++..|.+.+. ..+++ ..+.
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 7778888888888877654211 22233344466666666554 22222 2222
Q ss_pred HHHHcCCCc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 673 TMKNAGCAP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS 750 (967)
Q Consensus 673 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 750 (967)
..+... ++ +...+..++.++.. ++.++|+..|.+.... .|+......++..+...|++++|...|+++... +
T Consensus 466 ~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 466 RLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 222221 23 56678888888877 8999999989888876 455554445555667899999999999998765 3
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLV 830 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 830 (967)
+....+..++.++.+.|++++|...++++++.. +.+...+..++......|++++|+..|+++++ ..|+...+..++
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA 616 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARA 616 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 334456777889999999999999999999864 22333444455555567999999999999998 578888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 910 (967)
.++.+.|++++|+..+++++..+ +.+...+..++.++...|++++|+..++++++. .|.+..++..++.++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999864 446778899999999999999999999999974 4445699999999999999999
Q ss_pred HHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhccc
Q 048794 911 EARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASS 956 (967)
Q Consensus 911 ~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~ 956 (967)
+|+..++++++++|++... ...+++.....++..+...+.+...-.
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999888 689999999998888777666654433
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7e-27 Score=246.83 Aligned_cols=578 Identities=15% Similarity=0.088 Sum_probs=386.5
Q ss_pred hhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 048794 313 PGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNS--GFAPDSVTYNMMMKCYSKVGQVDEAVTLL 390 (967)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 390 (967)
.+.|...|..+.+.. ++++..+---.......+++..|+.+|..+... ..+||.. ..+..++.+.++.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 356666666665542 122222222223344566777777777775432 2233432 22334556777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048794 391 SEMVENGCEPDVIVMNTLIDTLYKA---DRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHG 467 (967)
Q Consensus 391 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 467 (967)
..+.+.+ +-++.++-.|...-... ..+..+..++...-..+. -++...+.|...|...|+++.+..+...+....
T Consensus 223 ~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 7777653 12222232222222222 234455555555544332 366677777777777777777777777666532
Q ss_pred C--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHH
Q 048794 468 C--FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLC 545 (967)
Q Consensus 468 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 545 (967)
. ..-...|..+.++|-..|+++.|...|......+.......+..++..+...|+.+.+...|+++.+..|.+..+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 1 11234466677777777888888777777776642222334445667777778888888778777777777777777
Q ss_pred hHHHHHHhcC----ChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHH
Q 048794 546 TLLPGVVKDG----QIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKL 621 (967)
Q Consensus 546 ~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 621 (967)
.|+..|...+ ..+.|..++.+.+... |.+...+..++.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------------------------------------~~d~~a~l~laql 423 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------------------------------------PVDSEAWLELAQL 423 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------------------------------------cccHHHHHHHHHH
Confidence 7777776654 4455555665555433 2233334444555
Q ss_pred HHhhccHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCc------CHhhHHHH
Q 048794 622 FCRQKKALAAKDLFVKFT---ENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA---GCAP------DISTYNLL 689 (967)
Q Consensus 622 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~------~~~~~~~l 689 (967)
+...+-+.. ..+|.... ...+....+...+.++..+...|++++|...|...... ...+ +...-+.+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 544433333 55554432 23344577788888888888999999998888887765 1122 22345667
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRGCKPNTI-SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 768 (967)
+.+....++++.|-+.|..+.+. .|+.+ .+..++-.....+...+|...+..++..+ ..++.++..++..|.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 77888888999999999999887 45544 34444433345578889999999988863 4455677778888888888
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh------------ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 769 LEEAKKLFEEMLDY-GCKPNCVIYNILINGFG------------KTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 769 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
+.-|.+-|+.+.+. ...+|+.+...|++.|. ..+.+++|+++|.++++ ..|. ..+-+.++-+++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 88888877777653 12357677777777653 23457899999999998 4554 678899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR-GISPDLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
..|++.+|..+|.++.+.. .....+|.+++++|..+|+|..|+++|+.+++. +-..+..++..|+.++++.|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999998753 345667899999999999999999999999843 33345689999999999999999999
Q ss_pred HhhcCCCcCCCCcccc-ccceeeeccC
Q 048794 914 KLAGGNCFVQPSEFVS-SELQVIYAEN 939 (967)
Q Consensus 914 ~~~~~~l~~~p~~~~~-~~l~~~~~~~ 939 (967)
..+.+++.+.|.|+.. .++|.+..+.
T Consensus 737 ~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 737 EALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999999999999998 6777666443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-29 Score=250.98 Aligned_cols=451 Identities=15% Similarity=0.128 Sum_probs=357.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcC
Q 048794 442 TLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQ 521 (967)
Q Consensus 442 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 521 (967)
.+..-..+.|++.+|++--...-..+ +.+......+-..+....+++.....-...+..+ +.-..+|..++..+...|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 34444556777777776544443332 2222222233334555555555554444444443 224567777778788888
Q ss_pred cHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHH
Q 048794 522 RVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAE 601 (967)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (967)
++++|+..|+.+.+..|.....|..++.++...|+.+.|...+..++..++..
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l--------------------------- 183 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL--------------------------- 183 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch---------------------------
Confidence 88888888888888888888888888888888888888888877777654321
Q ss_pred HHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 048794 602 KLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP 681 (967)
Q Consensus 602 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 681 (967)
.-....++..+...|+.++|...|.+.+... +....+|..|+..+..+|+...|+..|++.++. .|
T Consensus 184 ----------~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 184 ----------YCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred ----------hhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 1223345667777888888888888876653 455778999999999999999999999999986 45
Q ss_pred C-HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH
Q 048794 682 D-ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI 760 (967)
Q Consensus 682 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 760 (967)
+ ..+|..|+..|...+.+|+|+..|.++.... +....++..+...|..+|+.+-|++.|+++++.. +.-+.+|+.++
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~Nla 327 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLA 327 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHH
Confidence 4 5689999999999999999999999998763 3455677888888999999999999999999974 44567899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 839 (967)
.++...|+..+|.+.|.+++... +....+.++|+.+|..+|++++|..+|.+.++ +.|. ...+++|+.+|.++|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccH
Confidence 99999999999999999999863 33456899999999999999999999999998 7888 57899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 840 DDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
++|+..|++++. ++|+ ..++++++..|-..|+.+.|+++|.++.. +.|.. ++...|+..+.-.|+..+|+.-++
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999998 6775 56899999999999999999999999985 55654 889999999999999999999999
Q ss_pred CCCcCCCCccccc-cceeeeccCCCccc
Q 048794 918 GNCFVQPSEFVSS-ELQVIYAENPRATS 944 (967)
Q Consensus 918 ~~l~~~p~~~~~~-~l~~~~~~~g~~~~ 944 (967)
++++++|+-|.++ +|+...---.+|.+
T Consensus 481 ~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999993 66665555556655
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.7e-25 Score=232.50 Aligned_cols=606 Identities=14% Similarity=0.081 Sum_probs=397.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhcCChhhHHHHH
Q 048794 243 VEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGV--QPTAYTYILFIDYYGKSADPGKALETF 320 (967)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 320 (967)
.+.|...|....+..+ +|+-.+---.+.....+++..|+.+|..+..... .||. ...+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHH
Confidence 5888888888887643 3544433333444567889999999998766543 3443 334456777889999999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048794 321 EKMKIRGIVPNVVSCNASLYSL---AETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENG 397 (967)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 397 (967)
.++.+..+ -++.++..+...- .....+..+..++...-... +.++...+.|...|...|+++.+..+...++...
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 88887622 1122222222111 22234667777777766554 5677788889999999999999999999888764
Q ss_pred CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHH
Q 048794 398 CE--PDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTF 475 (967)
Q Consensus 398 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 475 (967)
.. .-...|-.+.++|...|++++|...|.+............+..++..+...|+++.+...|+..... .+.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence 11 1233577889999999999999999988876543322455667888999999999999999999886 45566777
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHh-----hcCCChhHHHh
Q 048794 476 NTLLHCLCKNE----EVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK-----WLYPDHITLCT 546 (967)
Q Consensus 476 ~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 546 (967)
..|...|...+ ..+.|..++.+.+... +.|...|..+...+...+-+.. +..|..+.. ..+..+..++.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777776654 5678888888887775 4577888888887777666655 777777663 35577788889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhc
Q 048794 547 LLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQK 626 (967)
Q Consensus 547 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 626 (967)
++..++..|+++.|...++++....-...+. +
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~---------------------------------d--------------- 489 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANK---------------------------------D--------------- 489 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCc---------------------------------c---------------
Confidence 9999999999999999988876541100000 0
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-hhHHHHHHHHHccCChHHHHHH
Q 048794 627 KALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDI-STYNLLLDGYGKSGRVEELLKL 705 (967)
Q Consensus 627 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 705 (967)
.+...+...-+.++..+-..++++.|...|..+++. .|+. .++..++-+....+...+|..+
T Consensus 490 ---------------e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 490 ---------------EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred ---------------ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 000112223344555555566666666666666654 2332 2333444333444566666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhcHHHHHHHHHc------------CCCHHHH
Q 048794 706 YEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGF-SPTPCTYGPLIDGLSK------------SGRLEEA 772 (967)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~g~~~~A 772 (967)
++.+...+ ..++..+.-++..+....++..|.+-|+...+... .++.-+...|++.|.+ .+.++.|
T Consensus 553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 66666543 33445555556666666666666665555555411 1233333334444332 2456778
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
+++|.++++.. +.+..+-+-++.+++..|++.+|..+|.++.+.. .....+|.+++.+|..+|+|-.|++.|+.+.+.
T Consensus 632 lq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887754 3366677777778888888888888888887752 223457888888888888888888888887743
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------------------cCCHHHH
Q 048794 853 -GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR-------------------AGMVEEA 912 (967)
Q Consensus 853 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~g~~~~A 912 (967)
..+.+..+...|+.++.+.|.+.+|.+.+..+... .|.++.....++.++.+ .+..++|
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~-~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a 788 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL-APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEA 788 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 33346677778888888888888888888877753 34444554555544432 2456677
Q ss_pred HHhhcCCCcCCCC
Q 048794 913 RKLAGGNCFVQPS 925 (967)
Q Consensus 913 ~~~~~~~l~~~p~ 925 (967)
.++|..+-...+.
T Consensus 789 ~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 789 RRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcCCC
Confidence 7777766555444
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=8.1e-28 Score=240.03 Aligned_cols=450 Identities=17% Similarity=0.161 Sum_probs=362.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048794 371 NMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKE 450 (967)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 450 (967)
..+..-..+.|++..|++.-..+-..+ +.+......+-..+....+++.....-....... +.-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344555567888888888666555443 3333344444455666666766655444444332 23567888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCH-HHHHHHHHHHhhcCcHhHHHHH
Q 048794 451 GQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDV-LTYNTIIYGLVKEQRVKDAIWF 529 (967)
Q Consensus 451 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 529 (967)
|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|...++.+ |+. .....++..+...|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999863 3356788899999999999999999999998875 443 3445566667778999999999
Q ss_pred HHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCC
Q 048794 530 FHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGIC 609 (967)
Q Consensus 530 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (967)
|.++.+..|.-..+|..|+..+...|+...|+..|++++...
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------------------------------------- 248 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------------------------------------- 248 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--------------------------------------
Confidence 999998888888889999999999999999998888877543
Q ss_pred CCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HhhHHH
Q 048794 610 RDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPD-ISTYNL 688 (967)
Q Consensus 610 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 688 (967)
|....+|..|+.+|.+.+.+++|+..|.+.+.. .|+ ..++..
T Consensus 249 -----------------------------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gN 291 (966)
T KOG4626|consen 249 -----------------------------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGN 291 (966)
T ss_pred -----------------------------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccc
Confidence 344567888888888999999999999888865 444 556777
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 768 (967)
++-.|...|..|-|++.|++++... +.-..+++.+..++...|+..+|.+.|.+++.-. +....+.+.++..|...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcc
Confidence 8888999999999999999999874 3345689999999999999999999999999863 4445678889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYF 846 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 846 (967)
+++|..+|..+++- .|+. ...++|+..|.++|++++|+..|++++. +.|+ ..++.+++..|-..|+.+.|++.|
T Consensus 370 ~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 370 IEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred chHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 99999999999984 5554 4899999999999999999999999998 8999 589999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHH
Q 048794 847 EELKLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVE 910 (967)
Q Consensus 847 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 910 (967)
.+++.. +| -.+++++|+.+|-..|+..+|+.-|+.+++ +.||. +++..++.++.-..+|.
T Consensus 446 ~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 446 TRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence 999984 56 467899999999999999999999999996 77886 88888888777554443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=4.3e-21 Score=217.89 Aligned_cols=261 Identities=18% Similarity=0.069 Sum_probs=191.5
Q ss_pred cCChHHHHHHHHHHHHcCC-Cc-CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048794 661 VHATEMGLDLFTTMKNAGC-AP-DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAM 738 (967)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 738 (967)
.+++++|+..|+..++.+. .| ....+..++..+...|++++|+..|++++... +.....+..++.++...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 4677888888888886541 22 34567777888888888888888888888763 334557777888888888888888
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 048794 739 DLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG 818 (967)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 818 (967)
..+++++... +.+..++..++.++...|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..|+++++.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 8888888763 4455678888888888888888888888888763 224567778888888888888888888888873
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 819 IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTI-----SY-NFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 819 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
.|+ ...++.++.++...|++++|+..|++++......... .+ ...+..+...|++++|.++++++++. .|
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p 539 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DP 539 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CC
Confidence 555 5778888888888888888888888888642111111 11 11122233468888888888888753 44
Q ss_pred CH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 892 DL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 892 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+. .++..++.++...|++++|++++++++++.+....
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 44 56778888888888888888888888888776443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.7e-22 Score=225.02 Aligned_cols=251 Identities=15% Similarity=0.088 Sum_probs=209.0
Q ss_pred ccCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHH
Q 048794 695 KSGRVEELLKLYEEMSFRG--CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 772 (967)
..+++++|+..|+++...+ .+.....+..++.++...|++++|+..+++++... +.....+..++.++...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3478999999999999764 13344578888899999999999999999999863 34456788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+..|+++++.. +.+..+|..++.++...|++++|+..|+++++ ..|+ ...+..++.++.+.|++++|+..+++++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999864 33677999999999999999999999999998 4665 67888999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-Hh------HHHHHHHHH-hcCCHHHHHHhhcCCCcCC
Q 048794 852 NGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YT------YNSLILNLG-RAGMVEEARKLAGGNCFVQ 923 (967)
Q Consensus 852 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~------~~~l~~~~~-~~g~~~~A~~~~~~~l~~~ 923 (967)
.. +.++..+..++.++...|++++|+..|+++++. .|+. .. +...+..+. ..|++++|++++++++.++
T Consensus 462 ~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 462 NF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred hC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 53 446788999999999999999999999999863 3331 11 122222333 4699999999999999999
Q ss_pred CCcccc-ccceeeeccCCCcccccchhhhh
Q 048794 924 PSEFVS-SELQVIYAENPRATSLSHKHCEY 952 (967)
Q Consensus 924 p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~ 952 (967)
|++..+ ..+|.+|...|++++|...+.+.
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999887 69999999999999988744443
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=7.7e-21 Score=214.09 Aligned_cols=328 Identities=14% Similarity=0.108 Sum_probs=152.9
Q ss_pred HHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccC
Q 048794 512 TIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVA 591 (967)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (967)
.++..+.+.|++++|..+++......|.+...+..++.+....|++++|+..+++++...+..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~----------------- 109 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ----------------- 109 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 344445566666666666666666666666666666666666666666666666555433111
Q ss_pred CCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048794 592 GPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLF 671 (967)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 671 (967)
......++..+...|++++|...|++.+.. .+.+..++..++..+...|++++|...+
T Consensus 110 --------------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 110 --------------------PEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred --------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 111222223333333333333333333221 1333444555555555555555555555
Q ss_pred HHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048794 672 TTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP 751 (967)
Q Consensus 672 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 751 (967)
+.+....+. +...+..+ ..+...|++++|+..++++......++......++.++...|++++|+..+++++... +.
T Consensus 168 ~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~ 244 (656)
T PRK15174 168 RTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LD 244 (656)
T ss_pred HHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 555443211 11122222 2244455555555555555443222222222333344445555555555555555432 22
Q ss_pred ChhcHHHHHHHHHcCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 048794 752 TPCTYGPLIDGLSKSGRLEE----AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSY 826 (967)
Q Consensus 752 ~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 826 (967)
+...+..++.++...|++++ |+..|+++++.. +.+..++..++.++...|++++|+..+++++. ..|+ ...+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~ 321 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVR 321 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 33344445555555555543 455555555432 11333455555555555555555555555554 2333 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..++.++...|++++|+..|+++...+ +.+...+..++.++...|++++|...|++++
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555555555555555554421 1112222233444555555555555555554
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=7e-18 Score=178.36 Aligned_cols=395 Identities=13% Similarity=0.105 Sum_probs=229.7
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 048794 203 SDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEAL 282 (967)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 282 (967)
...|++++|.+++.++++.. +.+...|..|..+|-..|+.+++...+--.--.. +.|...|-.+.....+.|+++.|.
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 33477777777777776654 3356666777777777777776665544433332 225566666666666667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHH----HHHHHHHhcCCHHHHHHHHHHH
Q 048794 283 EVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCN----ASLYSLAETGRIGEAKTIFNGL 358 (967)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~ 358 (967)
-.|.++++.. +++...+..-...|-+.|+...|.+.|.++.....+.+..-+. .++..+...++.+.|.+.+...
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777766654 3344444444555666666666666666666553211111111 1122333334444444444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048794 359 KNS-GFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTV 437 (967)
Q Consensus 359 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 437 (967)
... +-..+...++.++..+.+...++.+...+.........+|..-+..- -..... ... +-. ...+..++.
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~~~~~--~~~-~~~-~~~~~s~~l 378 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ERRREE--PNA-LCE-VGKELSYDL 378 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hhcccc--ccc-ccc-CCCCCCccc
Confidence 331 11122233444444444444444444444444332222222211000 000000 000 000 011222333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 048794 438 VTYNTLLSGLGKEGQVQKAIELFEGMTDHGCF--PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIY 515 (967)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 515 (967)
.. ..++-++.+....+....+...+.+.... .+...+..+..++...|.+.+|+.++..+.......+..+|..++.
T Consensus 379 ~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 33 22333444555555555555556655533 3567888999999999999999999999998865567789999999
Q ss_pred HHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcc
Q 048794 516 GLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDK 595 (967)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (967)
+|...|.+++|++.|+++....|.+..+-..|...+.+.|+.++|++.+.......+...+..
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~----------------- 520 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC----------------- 520 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc-----------------
Confidence 999999999999999999999999999999999999999999999999887653333222222
Q ss_pred hHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHH
Q 048794 596 SILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVK 637 (967)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 637 (967)
+.+++..+.....+.+...|+.++-...-..
T Consensus 521 -----------a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 521 -----------AWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred -----------cccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2233334445566777888877775444433
No 21
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.4e-17 Score=168.62 Aligned_cols=513 Identities=13% Similarity=0.040 Sum_probs=274.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 352 KTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDM 431 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 431 (967)
..++++..+. +|.++..|. +-....+.+.|+-++..+++. ++.+.. |.-++.+..-++.|..+++++++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555554 233444443 334456666677777777764 233333 334455666778888888887763
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCC--
Q 048794 432 KLAPTVVTYNTLLSGLGKEGQVQKAIELFEGM----TDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWP-- 505 (967)
Q Consensus 432 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 505 (967)
++.+...|......--.+|+.+...+++.+- ...|+..+..-|..=...|-..|..-.+..++...+.-|+..
T Consensus 436 -iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 436 -IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred -CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4446777776666666778877777776553 345677777777777777777788887777777776665432
Q ss_pred CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 506 DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
...+|..-...+.+.+.++-|+.+|..+.+.+|.+...|......-...|..+.-..++++++...+..
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka----------- 583 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA----------- 583 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc-----------
Confidence 235677777778888888888888888888888888888877777777777777777777666543211
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATE 665 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 665 (967)
+.+..+.+..+...|+...|+.++....... +.+...+.+-+....++.+++
T Consensus 584 --------------------------e~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 584 --------------------------EILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred --------------------------hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHH
Confidence 1112222333333444444444444433221 223444444444444555555
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLV 745 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 745 (967)
.|..+|.+.... .|+...|..-+....-.++.++|++++++.++.. +.-...|..+++.+-+.++.+.|.+.|..-.
T Consensus 636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 555555544443 3344444444444444455555555555555442 2122344444555555555555555444433
Q ss_pred hCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HH
Q 048794 746 SGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LK 824 (967)
Q Consensus 746 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~ 824 (967)
.. -+..+..|..++..-.+.|..-.|..++++..-.++ .+...|...+.+-.+.|+.+.|..+..++++. -|+ ..
T Consensus 713 k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~ 788 (913)
T KOG0495|consen 713 KK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGL 788 (913)
T ss_pred cc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccch
Confidence 32 122223444444444445555555555555544331 24445555555555555555555555555443 232 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNL 903 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 903 (967)
.|..-+....+-++-......+++. ..++.++..++..+....++++|.+.|.++++ ..||. ++|..+....
T Consensus 789 LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFE 861 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHH
Confidence 3333333333333333333333322 22334444455555555555555555555553 22222 4444444455
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.++|.-++-..++.+...-.|.+-.
T Consensus 862 l~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred HHhCCHHHHHHHHHHHhccCCCCCc
Confidence 5555555555555555555555443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.1e-19 Score=209.84 Aligned_cols=422 Identities=11% Similarity=0.015 Sum_probs=238.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 048794 402 VIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHC 481 (967)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (967)
.....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..++++..+. -+.+...+..+..+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 3334444555555666666666666555322 223444555555666666666666666665554 13334445555555
Q ss_pred HHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHH
Q 048794 482 LCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAF 561 (967)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 561 (967)
+...|++++|...+++++... +.+.. +..++..+...|+.++|+..++++.+..|.+...+..++.++...+..++|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 556666666666666665553 22333 5555555556666666666666666655555555555555555555555555
Q ss_pred HHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHh
Q 048794 562 RLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTEN 641 (967)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 641 (967)
+.++++.... + ..
T Consensus 171 ~~l~~~~~~p----~---------------------------------------------------------------~~ 183 (765)
T PRK10049 171 GAIDDANLTP----A---------------------------------------------------------------EK 183 (765)
T ss_pred HHHHhCCCCH----H---------------------------------------------------------------HH
Confidence 4443211000 0 00
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCh---HHHHHHHHHHHhCC-CCCC
Q 048794 642 LGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRV---EELLKLYEEMSFRG-CKPN 717 (967)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~-~~~~ 717 (967)
. .........++.... .......+++ ++|+..++.+.... ..|+
T Consensus 184 ~--~l~~~~~~~~~r~~~------------------------------~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 184 R--DLEADAAAELVRLSF------------------------------MPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred H--HHHHHHHHHHHHhhc------------------------------ccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 0 000000000000000 0001111223 56666666666431 1121
Q ss_pred hh-hH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CH
Q 048794 718 TI-SH----NIVISGLVKSNSIDKAMDLFYNLVSGGFS-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP---NC 788 (967)
Q Consensus 718 ~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~ 788 (967)
.. .+ ...+..+...|++++|+..|++++..+.+ |+. ....++.+|...|++++|+..|+++.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 11 11122345567777777777777665321 211 22224667777777777777777776542111 12
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGG-----------IRPD---LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL 854 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 854 (967)
.....++.++...|++++|++.++++.... ..|+ ...+..++.++...|++++|+..+++++...
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 345555666677777777777777776631 1123 2345667788888888888888888888753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.+...+..++.++...|++++|++.++++++. .|.+...+..++.++...|++++|+..++++++..|+++..
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 446677888888888888888888888888863 23335777788888888888888888888888888888886
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.4e-16 Score=161.52 Aligned_cols=618 Identities=11% Similarity=0.049 Sum_probs=474.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 048794 206 GNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVF 285 (967)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 285 (967)
+|..+|+.++..+.+.++ .++..|.+-.+.--..|++..|..++..-.+... .+...|..-+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cp-rSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEECP-RSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCC-chHHHHHHHH----hcCChHHHHHHH
Confidence 577889999998887764 3677787777777788999999888877665533 3666665444 456677788777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048794 286 NNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPN-VVSCNASLYSLAETGRIGEAKTIFNGLKNSGFA 364 (967)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 364 (967)
....+.. +.++..+..... --.+...-.+++++..+. .|+ +..|. +.......++|.-++.+..+.- +
T Consensus 339 A~Avr~~-P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~--iP~sv~LWK----aAVelE~~~darilL~rAvecc-p 407 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLKAAD---LESDTKNKKRVLRKALEH--IPRSVRLWK----AAVELEEPEDARILLERAVECC-P 407 (913)
T ss_pred HHHHHhC-CCChhhhhhHHh---hhhHHHHHHHHHHHHHHh--CCchHHHHH----HHHhccChHHHHHHHHHHHHhc-c
Confidence 7776652 333333332221 222334445667776665 333 33333 3455667777888998888752 3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHH
Q 048794 365 PDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRM----KDMKLAPTVVTY 440 (967)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~ 440 (967)
.+... ..+|.+..-++.|..+++...+. ++.+..+|..-...--..|+.+...+++.+. ...|+..+...|
T Consensus 408 ~s~dL----wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDL----WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHH----HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 33333 34567778889999999998875 5777788887777777889888888887764 345777788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHh
Q 048794 441 NTLLSGLGKEGQVQKAIELFEGMTDHGCFP--NTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLV 518 (967)
Q Consensus 441 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (967)
..=...|-..|..-.+..+.......|+.. ...+|..-...|.+.+.++-|+.+|..+++-. +.+..+|......-.
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHH
Confidence 888888888899999998888888777553 34678888888999999999999999988774 446778888777777
Q ss_pred hcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHH
Q 048794 519 KEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSIL 598 (967)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (967)
..|..++-..+|+++....|.....|...+..+...|+...|..++..++...+
T Consensus 562 ~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-------------------------- 615 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-------------------------- 615 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--------------------------
Confidence 889999999999999999999999999999999999999999999988876653
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048794 599 FAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAG 678 (967)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 678 (967)
.+..+.+..+...+.+..++.|+.+|.+.-. ..+...+|+--+......++.++|++++++.++.
T Consensus 616 -----------nseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 616 -----------NSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred -----------CcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 3445556667778889999999999988744 4566677877777777889999999999999986
Q ss_pred CCcC-HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHH
Q 048794 679 CAPD-ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYG 757 (967)
Q Consensus 679 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (967)
-|+ ...|..+++.+.+.++.+.|.+.|.+-.+. ++.....|..+...--+.|..-.|..++++..-.+ +.+...|.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 455 456888999999999999999999887766 35566778888888888899999999999998875 45566888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 837 (967)
..+.+-.+.|+.+.|..++.++++. ++.+...|..-+.+.-+.++-.+++..+++.. -|..+...++..+....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHHHHHHH
Confidence 8999999999999999999999987 45566788888888777777677777776653 35567777888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHH
Q 048794 838 RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSL 899 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 899 (967)
++++|.++|.+++..+ +....+|..+...+.+.|.-++-.+++.++.. .+|.- ..|.+.
T Consensus 832 k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 9999999999999864 34566788888888999999999999999985 34443 555444
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=6.3e-20 Score=206.72 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=191.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG 697 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (967)
+++.+...|++++|...++++.... +.+...+..+. .+...|++++|+..++.+++....++......++..+...|
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g 226 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVG 226 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCC
Confidence 3444444555555555554443322 23344444443 47789999999999999988754344555556677889999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 048794 698 RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDK----AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAK 773 (967)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 773 (967)
++++|+..|+++.... +.+...+..++..+...|++++ |+..+++++... +.+..++..++.++...|++++|+
T Consensus 227 ~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 227 KYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999875 4466788889999999999986 899999999874 456678899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
..++++++.. +.+...+..++.++.+.|++++|++.|+++... .|+. ..+..++.++...|++++|...|+++++.
T Consensus 305 ~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 305 PLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999864 235668888999999999999999999999984 6764 34555688899999999999999999974
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
.|+.. ...+++|...|.++.+.
T Consensus 382 --~P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 382 --RASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred --Chhhc-----------hhhHHHHHHHHHHHHHh
Confidence 34331 34556888888888753
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=8.7e-16 Score=162.78 Aligned_cols=400 Identities=15% Similarity=0.116 Sum_probs=262.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048794 123 YTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKF 202 (967)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 202 (967)
......+..+...|++++|.+++.++.+.. +.....|..|..+|-..|+.+++...+-..--.+ +-|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333334444445588999999988888763 6677788888888888888888888776664432 33557788888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhcCCCH
Q 048794 203 SDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTL----ICGLLRLDRV 278 (967)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~ 278 (967)
.+.|.++.|.-.+.+.++.. +++...+-.-...|-+.|+...|...|.++.....+.+..-+..+ ++.+...++.
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 88888888888888888775 345555566677788888888888888888877543333333333 3445556666
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 279 EEALEVFNNMEIL-GVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNG 357 (967)
Q Consensus 279 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 357 (967)
+.|.+.++..... +-..+...+..++..+.+...++.+......+......+|..-|..- ..++. .-. .+..
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~-~~~-~~~~ 369 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRRE-EPN-ALCE 369 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhccc-ccc-cccc
Confidence 7888877776652 22344455666777777777777777776666553223332221100 00000 000 0000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048794 358 LKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENG--CEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAP 435 (967)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 435 (967)
...+..++... ..+.-++.+.+..+....++....... +.-+...+..+..++...|.+.+|+.+|..+......-
T Consensus 370 -~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 370 -VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred -CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 01112233333 223334555555555555666666655 33345578888899999999999999999988765555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC--------CCCCH
Q 048794 436 TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN--------CWPDV 507 (967)
Q Consensus 436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~ 507 (967)
+...|..+..+|...|.++.|.+.++..+... |.+......|...+...|+.++|.+.+..+..-+ ..|+.
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ 526 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPER 526 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHH
Confidence 67788888999999999999999999988762 4456667778888888999999999988865322 23444
Q ss_pred HHHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 508 LTYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
.........+.+.|+.++-+.+-..+..
T Consensus 527 ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 527 RILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555566678888888876655555543
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=3.9e-18 Score=196.95 Aligned_cols=190 Identities=12% Similarity=0.024 Sum_probs=96.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCC
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCA-PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKP---NTISHNIVISGLVKSNS 733 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 733 (967)
+...|++++|+..|+.+++.+.+ |+. ....++..|...|++++|+..|+++....+.. .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 34567777788888777765422 222 22234667777788888888887776542111 01234445556667777
Q ss_pred HHHHHHHHHHHHhCCCC-----------CC---hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048794 734 IDKAMDLFYNLVSGGFS-----------PT---PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG 799 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~-----------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 799 (967)
+++|...++++....++ |+ ...+..++..+...|++++|+++++++.... +.+...+..++.++.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77777777776654211 01 1122333444444444444444444444432 113334444444444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
..|++++|++.+++++. ..|+ ...+..++..+...|++++|...++++++
T Consensus 405 ~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 405 ARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred hcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444444444444 2333 23344444444444444444444444444
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.9e-20 Score=201.03 Aligned_cols=303 Identities=17% Similarity=0.154 Sum_probs=233.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN---TISHNIVISGLVKS 731 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 731 (967)
+..+...|++++|+..|.++++.+ +.+..++..++..+...|++++|+.+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445567888999999999998874 23566788888889999999999999998887532111 13567778888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGDVETA 807 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 807 (967)
|++++|...|.++.+.. +.+..++..++.++.+.|++++|++.++++.+.+..+.. ..+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999988753 445567888899999999999999999998876433221 2456677788889999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 808 CELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+..|+++++. .|+ ...+..++.++.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999874 455 5678888999999999999999999998753222245677888999999999999999999886
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeeec---cCCCcccccc----hhhhhhcccccc
Q 048794 887 RGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYA---ENPRATSLSH----KHCEYLASSCTF 959 (967)
Q Consensus 887 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~---~~g~~~~~~~----~~~~~~~~~~~~ 959 (967)
..|+...+..++..+.+.|++++|..+++++++.+|+++.+..+...+. ..|+.+++.. ...+.+.++|.|
T Consensus 278 --~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 --EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred --hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 3567666688899999999999999999999999999887643333333 2456666443 222357889999
Q ss_pred cccc
Q 048794 960 VCPY 963 (967)
Q Consensus 960 ~~~~ 963 (967)
+|.+
T Consensus 356 ~c~~ 359 (389)
T PRK11788 356 RCRN 359 (389)
T ss_pred ECCC
Confidence 9864
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=9.1e-19 Score=189.39 Aligned_cols=304 Identities=14% Similarity=0.107 Sum_probs=167.6
Q ss_pred HHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCc
Q 048794 515 YGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPD 594 (967)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (967)
..+...|++++|...|.++.+..|.+..++..++..+...|++++|+..++.++.......
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------------------- 103 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR------------------- 103 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-------------------
Confidence 3455566777777777777766666666666666666666666666665554432110000
Q ss_pred chHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 595 KSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTM 674 (967)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 674 (967)
......+..++..+...|++++|+..|+++
T Consensus 104 --------------------------------------------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 104 --------------------------------------------------EQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 001123455566666777777777777777
Q ss_pred HHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 675 KNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT----ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS 750 (967)
Q Consensus 675 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 750 (967)
.+.. +++..++..++.++.+.|++++|++.++.+...++.+.. ..+..++..+...|++++|...++++++.. +
T Consensus 134 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 211 (389)
T PRK11788 134 VDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-P 211 (389)
T ss_pred HcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-c
Confidence 6542 234556667777777777777777777777665322211 122334445555566666666666655542 2
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLV 830 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 830 (967)
.....+..++..|.+.|++++|++.++++.+.++.....++..++.+|...|++++|+..++++.+. .|+...+..++
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la 289 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALA 289 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 2333455555666666666666666666655321111234555555666666666666666665552 44444445556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGR---SGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
.++.+.|++++|..+++++++. .|+...+..+...+.. .|+.+++...++++++.++.|++
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6666666666666666665553 3444444444444332 34556666666655544444444
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=4.3e-16 Score=175.31 Aligned_cols=468 Identities=16% Similarity=0.114 Sum_probs=309.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 376 CYSKVGQVDEAVTLLSEMVENGCEPDV-IVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQ 454 (967)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 454 (967)
...+.|+++.|+..|.++.+.. |+. .....++..+...|+.++|+..+++..... .........+...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4668899999999999988764 443 122277788888899999999999988422 224445555566788889999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHH
Q 048794 455 KAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR 534 (967)
Q Consensus 455 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (967)
+|+++++++.+.. +.+...+..++..+...++.++|++.+.++.+.+ |+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999998873 4456777777888889999999999999998875 444444444444555666766999999999
Q ss_pred hhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcc
Q 048794 535 KWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSV 614 (967)
Q Consensus 535 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (967)
+..|.+...+..+..+..+.|-...|.+++++.-.. .....+..+
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~~~~~l------------------------------- 241 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAEHYRQL------------------------------- 241 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHHHHHHH-------------------------------
Confidence 999999999999999999999999998887652110 000000000
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHhh-----HHH
Q 048794 615 VVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA-GCAPDIST-----YNL 688 (967)
Q Consensus 615 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-----~~~ 688 (967)
..+.+.+..+...... ..... +.--.+.|+.-++.++.. +..|.... ..-
T Consensus 242 ------------~~~~~a~~vr~a~~~~--~~~~~----------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 242 ------------ERDAAAEQVRMAVLPT--RSETE----------RFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred ------------HHHHHHHHHhhccccc--ccchh----------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence 0000111110000000 00000 001234556666666552 11132211 122
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhcHHHHHHHH
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGF-----SPTPCTYGPLIDGL 763 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 763 (967)
.+.++...|+++++++.|+.+...+.+....+...++.+|...+++++|..+|..+..... +++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 3445677788888888888888776443445677888888888888888888888876531 12222345677788
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGC-------------KPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSV 828 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~-------------~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ 828 (967)
...+++++|..+++++.+..+ .||.. ....++..+.-.|++.+|++.++++... .| |......
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~ 455 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIA 455 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 888888888888888876311 12222 3444566677888888888888888774 45 4677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 829 LVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 829 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
++.++...|.+.+|.+.++.+...+ +.+..+....+.++...|++.+|..+.+.+.+ ..|+......|......+..
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r~~~~h~~ 532 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDRQRKVHNM 532 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHHHHHHhhh
Confidence 8888888888888888887776642 33455667788888888888888888888875 34554444444444444444
Q ss_pred HHHHH
Q 048794 909 VEEAR 913 (967)
Q Consensus 909 ~~~A~ 913 (967)
++...
T Consensus 533 ~~l~~ 537 (822)
T PRK14574 533 YELRV 537 (822)
T ss_pred HHHHh
Confidence 44443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.3e-16 Score=179.57 Aligned_cols=232 Identities=11% Similarity=0.087 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHhCCC-CCCh-h----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHH
Q 048794 699 VEELLKLYEEMSFRGC-KPNT-I----SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~-~~~~-~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 772 (967)
.|.|+.-++.+...-. .|.. . +..-.+-++...+++.++++.|+.+...+.+...-+...++++|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3566666677665211 1221 1 23345567788999999999999999876554445777899999999999999
Q ss_pred HHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHH
Q 048794 773 KKLFEEMLDYGC-----KPNCVIYNILINGFGKTGDVETACELFKQMIKGGI-----------RPD---LKSYSVLVDCL 833 (967)
Q Consensus 773 ~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~ 833 (967)
+.+|+++..... +++......|..+|...+++++|..+++++.+... .|+ ......++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999976421 22333457788899999999999999999987211 233 34556678889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEA 912 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 912 (967)
...|++.+|.+.+++++... +.+......+++++...|.+.+|.+.++.+.. +.|+. .+....+.++...|++.+|
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999998753 55888899999999999999999999988774 56665 7778999999999999999
Q ss_pred HHhhcCCCcCCCCccccccce
Q 048794 913 RKLAGGNCFVQPSEFVSSELQ 933 (967)
Q Consensus 913 ~~~~~~~l~~~p~~~~~~~l~ 933 (967)
....+++++..|+++....|.
T Consensus 504 ~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 504 ELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHHhhCCCchhHHHHH
Confidence 999999999999999864433
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=8.4e-17 Score=155.71 Aligned_cols=482 Identities=14% Similarity=0.124 Sum_probs=295.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCc----ccH
Q 048794 261 NLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY-ILFIDYYGKSADPGKALETFEKMKIRGIVPNV----VSC 335 (967)
Q Consensus 261 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 335 (967)
+-.++..|.+.|.....+.+|+..++-+.+....|+...+ ..+...+.+...+.+|+..++-....-...+. ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3444455666777777888888888888777666665443 34556677778888888888776665222122 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCh------------h
Q 048794 336 NASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDV------------I 403 (967)
Q Consensus 336 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~ 403 (967)
+.+...+.+.|.+++|+..|+...+. .|+..+-..|+-++...|+.+...+.|..++.....+|. .
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44455578889999999999988876 577776666666777888999999999888764322222 2
Q ss_pred hHHHHHH-----HHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHH
Q 048794 404 VMNTLID-----TLYKAD--RVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFN 476 (967)
Q Consensus 404 ~~~~l~~-----~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 476 (967)
..+.-+. .+-+.+ +-++++-.--+++..-+.|+.. .| .+-+++.++.-.-..+..+.. .
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dle--i 423 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDLE--I 423 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhhh--h
Confidence 2221111 111100 0111111111111111111100 00 112222222211110000111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHH-Hhh-cCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhc
Q 048794 477 TLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG-LVK-EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKD 554 (967)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 554 (967)
.-..-+.++|+++.|+++++-..+++-.......+.+... |.+ ..++.+|..+-+........++.....-
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nk------- 496 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNK------- 496 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcC-------
Confidence 1122355667777777766666555322222222222222 122 2234444444333333222221111111
Q ss_pred CChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHH
Q 048794 555 GQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDL 634 (967)
Q Consensus 555 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 634 (967)
T Consensus 497 -------------------------------------------------------------------------------- 496 (840)
T KOG2003|consen 497 -------------------------------------------------------------------------------- 496 (840)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 048794 635 FVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGC 714 (967)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 714 (967)
...-...|++++|...|++.+... .....++..++-.+...|+.++|+++|-++... .
T Consensus 497 --------------------gn~~f~ngd~dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 497 --------------------GNIAFANGDLDKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred --------------------CceeeecCcHHHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 112234567777777777777542 234455666677778888888888888776543 2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 715 KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL 794 (967)
Q Consensus 715 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 794 (967)
..+...+..+.+.|....+...|++++.++.+. ++.++.++..+++.|-+.|+-+.|.+.+=+-... ++.+..+..+|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 346667778888888888889999988887776 6778888999999999999999999887666654 56688899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLV-DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
+..|....-+++|+.+|+++.- +.|+..-|..++ .|+.+.|++.+|+++|+..... ++.+..++..|..++...|
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 9999999899999999999876 689988888775 5666789999999999998764 6778888888888888777
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.82 E-value=2.9e-14 Score=150.34 Aligned_cols=273 Identities=17% Similarity=0.178 Sum_probs=200.9
Q ss_pred HHHHHHHccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 048794 4 VFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGI 83 (967)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 83 (967)
++..|+.-|+.|+.-||..|+..|+..|+.+.|- .|..|..+..+.....+++++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 5778999999999999999999999999999998 8888888877778888999998888888877655
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 048794 84 KPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE-GCGPDVVTYTV 162 (967)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 162 (967)
.|..++|+.|..+|...||... |+...+ ....+...+...|.-..-..++..+.-. +.-|+. ..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---EN 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HH
Confidence 6889999999999999999876 333222 2233444555556555555555554322 222333 44
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC
Q 048794 163 LIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDC-GNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVG 241 (967)
Q Consensus 163 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (967)
.+....-.|.|+.+++++..+...... .+... .++-+... ..+++...+...+.. .++..++..++..-...|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 555566777888888888776432211 11111 24444332 233443333333332 479999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 048794 242 NVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSAD 312 (967)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 312 (967)
+.+.|..++.+|++.|.+.+.+.|..|+.+ .++...+..++..|...|+.|+..|+...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999999999999999877 77888889999999999999999999887777777555
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=3.3e-16 Score=151.65 Aligned_cols=483 Identities=14% Similarity=0.116 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 048794 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVM-NTLIDTLYKADRVDEAWEMFCRMKDMKLAPT----VVTYNT 442 (967)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ 442 (967)
.++..|.+-|.......+|+..++.+++...-|+...+ ..+...+.+...+.+|++.++...+.-+..+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445556666666778888889888887766665543 3355667788889999999988776422222 345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCC------------CCHHHH
Q 048794 443 LLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCW------------PDVLTY 510 (967)
Q Consensus 443 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~ 510 (967)
+...+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+-+...+.|.+++..... |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 666778899999999999998875 578887777787888889999999999988754222 222222
Q ss_pred HHHHHH-----HhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 511 NTIIYG-----LVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 511 ~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
+..+.. ..+ .+-..|.+..-...+...|-..+-...+. +=.++.++....
T Consensus 360 ~eai~nd~lk~~ek-~~ka~aek~i~ta~kiiapvi~~~fa~g~--------dwcle~lk~s~~---------------- 414 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEK-ENKADAEKAIITAAKIIAPVIAPDFAAGC--------DWCLESLKASQH---------------- 414 (840)
T ss_pred HHHHhhHHHHHHHH-hhhhhHHHHHHHHHHHhccccccchhccc--------HHHHHHHHHhhh----------------
Confidence 221111 111 11112222222222211111100000000 001111111000
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCh
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE-VHAT 664 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 664 (967)
. +....+-..-+-.+.++|+++.|.+++.-+.++.....+..+-+..+-.+.+ .+++
T Consensus 415 --------~--------------~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~ 472 (840)
T KOG2003|consen 415 --------A--------------ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDF 472 (840)
T ss_pred --------h--------------hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccch
Confidence 0 0000111123456889999999999998876554444444333332322333 4467
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNL 744 (967)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 744 (967)
.+|..+-...+... .-+..+...-++.....|++++|...|++++..+ ..-..++..++-.+...|+.++|++.|-++
T Consensus 473 ~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 473 ADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred hHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 88887777776543 3456666666667778899999999999998653 111234555666788899999999999887
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH
Q 048794 745 VSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLK 824 (967)
Q Consensus 745 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 824 (967)
... ...+..++..++..|....+...|++++-++... ++.|+.+...|+..|-+.|+-..|.+.+-.-..- ++-+..
T Consensus 551 h~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie 627 (840)
T KOG2003|consen 551 HAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIE 627 (840)
T ss_pred HHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchH
Confidence 654 3445667888999999999999999999998875 5668889999999999999999999987766552 344578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNF-MINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
+...|+..|....-+++|+.+|+++.- +.|+..-|.. ++.++.+.|++++|.++|+...+. +|.+.+.+.-|....
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 899999999998899999999999875 5788877764 566778999999999999999875 777778887777776
Q ss_pred HhcC
Q 048794 904 GRAG 907 (967)
Q Consensus 904 ~~~g 907 (967)
...|
T Consensus 705 ~dlg 708 (840)
T KOG2003|consen 705 GDLG 708 (840)
T ss_pred cccc
Confidence 6655
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9e-16 Score=153.90 Aligned_cols=285 Identities=13% Similarity=0.069 Sum_probs=234.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHH
Q 048794 643 GVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHN 722 (967)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 722 (967)
+...+.......+..+...+++.+..++.+.+.+.. ++....+..-+..+...|+..+-..+-.++.+.. |..+.+|.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 345566777777888899999999999999999875 4455555555668888999999888888988874 55778999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048794 723 IVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG 802 (967)
Q Consensus 723 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (967)
+++--|...|+..+|.++|.++...+.. -...|...+..|.-.|..++|...|..+.+. ++-......-++.-|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 9999999999999999999999886432 2347889999999999999999999999875 2223334455666788899
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCCHH
Q 048794 803 DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN-----GLDA-DTISYNFMINGLGRSGRIE 875 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~ 875 (967)
+.+-|.+.|.++.. +.|+ +..++-++-+....+.+.+|..+|+.++.. +-.+ -..++++|+.+|.+.++++
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999988 6776 567888888888999999999999998731 1111 3456889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-cccee
Q 048794 876 EALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQV 934 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~ 934 (967)
+|+..+++++.. .+.+.+++.+++.++...|+++.|+.+|.|+|.++|+|..+ -.|+.
T Consensus 473 eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 999999999975 56677999999999999999999999999999999999776 34443
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.4e-13 Score=131.35 Aligned_cols=453 Identities=12% Similarity=0.058 Sum_probs=313.7
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 048794 308 GKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAV 387 (967)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 387 (967)
...++...|..+|+++.... ..+...|...+.+-.++.....|..++++....- |.-...|-..+.+--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence 34566777888888877654 3366777777888888889999999999888752 222234444444445678999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 048794 388 TLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDH- 466 (967)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 466 (967)
++|+.-.+- .|+...|.+.+..-.+-+.++.|..++++..-. .|++.+|......-.++|....+..+++...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999998875 799999999999999999999999999998753 488899988888888899999999999888764
Q ss_pred CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHhhcCc---HhHHHH-----HHHHHHhh
Q 048794 467 GC-FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPD-VLTYNTIIYGLVKEQR---VKDAIW-----FFHQMRKW 536 (967)
Q Consensus 467 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~---~~~A~~-----~~~~~~~~ 536 (967)
|- ..+...+.++..--..+..++.|.-+++-.+..-+... ...+..+...-.+-|+ +++++- -|++..+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 10 11233444444444567788999999988877632111 3444444444333444 445543 35556667
Q ss_pred cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchH
Q 048794 537 LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVV 616 (967)
Q Consensus 537 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (967)
.|.|..+|...++.-...|+.+.-.+.|++++...++..+..+|...|-.-+ +
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi---------------------------n 370 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI---------------------------N 370 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH---------------------------H
Confidence 8899999999999999999999999999999999999888998887652111 1
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 048794 617 PIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYL--IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYG 694 (967)
Q Consensus 617 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (967)
-.+..-....|.+.+.++|..+++-.+......+-..+ +.-..++.+...|.+++...+.. .|....+...+..-.
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHH
Confidence 11222334566777777777776654444443333333 33344677777777777777654 566666666666667
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhcHHHHHHHHHcCCCHHHHH
Q 048794 695 KSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGF-SPTPCTYGPLIDGLSKSGRLEEAK 773 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 773 (967)
+.+++|....+|++.+.-+ |.+..+|...+..-...|+.+.|..+|+-+++... +.....+...++.-...|.++.|.
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 7778888888888777764 44566777777777777888888888877776522 112234555666666777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
.+|+++++. .+...+|...+..-
T Consensus 528 ~LYerlL~r--t~h~kvWisFA~fe 550 (677)
T KOG1915|consen 528 ALYERLLDR--TQHVKVWISFAKFE 550 (677)
T ss_pred HHHHHHHHh--cccchHHHhHHHHh
Confidence 888887774 34555666666543
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=9.2e-13 Score=129.13 Aligned_cols=439 Identities=11% Similarity=0.146 Sum_probs=220.9
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH-HHHHHHH
Q 048794 51 NAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNV-YTFTICI 129 (967)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 129 (967)
+...|....+.-..++++..|.++|+++...+ ..+...|...+..-.+......|+.+++.+...- |.+ ..|.-.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHH
Confidence 44555555555556666677777777776543 3444455566666666677777777777766542 222 2344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIE 209 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 209 (967)
..--..|++..|.++|++..+ ..|+..+|.+.+..-.+-+.++.|..+|+...- +.|+..+|.-..+.-.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 555566777777777777665 367777777777777777777777777777653 3466666666666666677777
Q ss_pred HHHHHHHHHHhC-C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHH--
Q 048794 210 VVKEFWSQMVAD-G-YAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPN-LHTYNTLICGLLRLDRVEEALEV-- 284 (967)
Q Consensus 210 ~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~-- 284 (967)
.++.++...+.. | -..+...+.++...-.++..++.|..+|.-.+..-+... ...|......--+.|+.....++
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 777776665543 1 011223344444444455566666666665555321111 22233333222233333222222
Q ss_pred ------HHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-cccHHHHH--------HHHHhcCCHH
Q 048794 285 ------FNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPN-VVSCNASL--------YSLAETGRIG 349 (967)
Q Consensus 285 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~--------~~~~~~g~~~ 349 (967)
++.+.+.+ +.|..++-..++.-...|+.+...+++++++..-.+.+ ...|...+ ..-....+.+
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 22222221 34444555555555555666666666666554411111 01111111 1112334455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 350 EAKTIFNGLKNSGFAPDSVTYNMMMKCYS----KVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMF 425 (967)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 425 (967)
.+.++++...+. +|....||..+--.|+ +..++..|.+++..++.. -|...+|...|..-.+.++++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555442 2333334433333332 334555555555554432 344455555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 048794 426 CRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGC-FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPR 501 (967)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (967)
++..+.++. +..+|......-...|+.+.|..+|+-..+... ......|...+..-...|.++.|..+++.+++.
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 555554432 444444444444445555555555555544311 111222333333333445555555555555544
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-13 Score=134.73 Aligned_cols=369 Identities=13% Similarity=0.078 Sum_probs=247.9
Q ss_pred CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 506 DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
|...+...+-.+.+.|....|+..|.......|-....|..|...... .+.+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~~----------------------- 216 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILSI----------------------- 216 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHHH-----------------------
Confidence 444444445556778888888888888887777777777776654221 111100
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcch--HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVV--VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHA 663 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 663 (967)
.-.+.+.+...+ .-+..++......+++..-+... ...|.+.+...-+..+.+.....+
T Consensus 217 ------------------l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rD 277 (559)
T KOG1155|consen 217 ------------------LVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRD 277 (559)
T ss_pred ------------------HHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhh
Confidence 011112111111 12333444444555555555444 445667777777777777778888
Q ss_pred hHHHHHHHHHHHHcCCCc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 664 TEMGLDLFTTMKNAGCAP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLF 741 (967)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 741 (967)
+++|+.+|+++.+..+-. |..+|..++ |.+..+ .+..-+-+.....+ +-.+.|+-.+++-|...++.+.|+.+|
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~-skLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK-SKLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh-HHHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHH
Confidence 999999999888874321 344444443 222221 12112222222222 334456667778888888899999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 048794 742 YNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP 821 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 821 (967)
+++++-+ +....+|..++.-|..+.+...|+..|+++++.+ +.|...|..++.+|...+.+.-|+-.|+++.. .+|
T Consensus 354 kRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kP 429 (559)
T KOG1155|consen 354 KRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKP 429 (559)
T ss_pred HHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCC
Confidence 9998874 3445678888888999999999999999998864 34777999999999988888999999999888 567
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCH-H
Q 048794 822 D-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR----G-ISPDL-Y 894 (967)
Q Consensus 822 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~-~ 894 (967)
+ ...|..|+.+|.+.++.++|++.|+.++..+ +.+..++..|+..|-+.++.++|.++|++.++. | ..|+. .
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 5 6788899999999999999999999988765 456677888999999999999999998887742 2 22222 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+..-|+.-..+++++++|..++.+++.-+|+--.
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee 542 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATLVLKGETECEE 542 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence 2233666677889999999888888776554433
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6e-16 Score=158.87 Aligned_cols=291 Identities=17% Similarity=0.105 Sum_probs=213.9
Q ss_pred hccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHhhHHHHHHHHHccCChHHH
Q 048794 625 QKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCA--PDISTYNLLLDGYGKSGRVEEL 702 (967)
Q Consensus 625 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 702 (967)
+=+..+|...|.++.... ....-+...++.+|.+.+++++|+++|+.+.+..+. .+...|...+..+ .+.-+-
T Consensus 332 ~y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHH
Confidence 346677888887754332 223366677788888888999999998888876321 1344444444333 222222
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 703 LKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
--+-+.+.... +..+.+|-+++++|..+++.+.|++.|+++++.+ +...-+|..++.-+.....++.|.+.|+.++..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22334444443 5567788899999999999999999999988863 334567777777778888889999999888864
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048794 783 GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTIS 860 (967)
Q Consensus 783 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 860 (967)
.| +.-+|.-++..|.++++++.|+-.|+++++ +.|. ......++.++.+.|+.|+|+++++++...+ +.++-.
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 33 334788888888899999999999999888 6776 4566778888888899999999999988754 335556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
-...+.++...+++++|...++++.+. .|.+..++..++.+|.+.|+.+.|+..+.=+.+++|.-..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 666788888899999999999988874 5555688888889999999999999999988888887554
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.9e-15 Score=144.10 Aligned_cols=355 Identities=14% Similarity=0.102 Sum_probs=258.9
Q ss_pred cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchH
Q 048794 537 LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVV 616 (967)
Q Consensus 537 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (967)
...|+..++..+-.+.+.|..+.|++.+...+...| .+|..++.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-----~~W~AWle------------------------------- 203 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-----WFWSAWLE------------------------------- 203 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-----cchHHHHH-------------------------------
Confidence 445566666677778889999999999888775432 33433321
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 048794 617 PIIKLFCRQKKALAAKDLFVKFTENLGVTS-TL-EMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYG 694 (967)
Q Consensus 617 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (967)
-++...-.+....+. .+.+. +. ..-..+..++......+++..-.......|.+-+...-+..+.+..
T Consensus 204 --------L~~lit~~e~~~~l~--~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y 273 (559)
T KOG1155|consen 204 --------LSELITDIEILSILV--VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASY 273 (559)
T ss_pred --------HHHhhchHHHHHHHH--hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHh
Confidence 111111111111111 11121 11 1123345666777788999999999998887666666666677778
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHH
Q 048794 695 KSGRVEELLKLYEEMSFRGCKPNT---ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 771 (967)
...++|+|+..|+++.+.+ +.+. .++..++ |.+..+ ..+..+.+-...-..-.+.+...+++-|.-.++.+.
T Consensus 274 ~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~L--Yv~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEK 348 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVL--YVKNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEK 348 (559)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHH--HHHhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHH
Confidence 8899999999999999874 3222 2333222 233222 223333333322123445577778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 772 AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 772 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
|+..|+++++.++ ....+|..++--|..+++...|++.|+++++ +.| |-.+|+.||.+|.-.+...=|+-+|+++.
T Consensus 349 Av~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 349 AVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 9999999999752 2456899999999999999999999999999 566 46899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc-------CC
Q 048794 851 LNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCF-------VQ 923 (967)
Q Consensus 851 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-------~~ 923 (967)
... +.|+..|..|+++|.+.++.++|+.+|+++...| +.+..++..|+..+.+.++.++|.+++++.+. .+
T Consensus 426 ~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 ELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred hcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 853 4488899999999999999999999999999753 44678999999999999999999999999987 45
Q ss_pred CCcccc-ccceeeeccCCCcccccc
Q 048794 924 PSEFVS-SELQVIYAENPRATSLSH 947 (967)
Q Consensus 924 p~~~~~-~~l~~~~~~~g~~~~~~~ 947 (967)
|+-..+ .-|+..+.+.++|++|..
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHH
Confidence 544444 469999999999999765
No 40
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.8e-13 Score=130.95 Aligned_cols=427 Identities=16% Similarity=0.214 Sum_probs=262.8
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH---HHHHHHHcCCCCcHHHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMN---LLEEMERLGLRPNVYTFTICI 129 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~ 129 (967)
++-|.|+. ++.+|..+.+.-+|+.|...|++.+...-..|++..+-.+.-+--.. .|-.|...| ..+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc----
Confidence 34455543 45567788888888888888888888777777654433222111122 222333333 2222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIE 209 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 209 (967)
+.|++.+ -+|+.. |.+..++..+|.++++.-..++|.+++++......+.+..+|+.++.+-+-.
T Consensus 191 ----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---- 255 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---- 255 (625)
T ss_pred ----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----
Confidence 4455444 333333 3466778888888888888888888888887777777888888887765432
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCH-HHHHHH
Q 048794 210 VVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEE----AFSILDLMRGEGILPNLHTYNTLICGLLRLDRV-EEALEV 284 (967)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~ 284 (967)
...++..+|+...+.||..++|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++. ..+..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 226677777777788888888888888888887765 446677888888888888888888877776665 334455
Q ss_pred HHHHHHc----CC----CCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC----CCCC---cccHHHHHHHHHhcCCHH
Q 048794 285 FNNMEIL----GV----QPTAYTYILFIDYYGKSADPGKALETFEKMKIRG----IVPN---VVSCNASLYSLAETGRIG 349 (967)
Q Consensus 285 ~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~ 349 (967)
+.++... .+ +.|..-|...+..|....|...|..+..-..... +.|+ ...|..+....++....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554332 12 2244456666777777777777776655544321 1111 233455666667777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C---H-------
Q 048794 350 EAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKAD-R---V------- 418 (967)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~------- 418 (967)
.-...++.+..+-.-|+..+...++++..-.|.++-..++|..++..|...+......+...+++.. . +
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQV 495 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 7888888887776677777777888877777888888888877776653333333333333333322 0 0
Q ss_pred ---HHHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCcHHHHHHHHHHHHh
Q 048794 419 ---DEAWEMFC-------RMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHG----CFPNTVTFNTLLHCLCK 484 (967)
Q Consensus 419 ---~~A~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 484 (967)
+-|..+++ +++. ........+.++-.+.+.|..++|.+++..+...+ ..|.......++.....
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 01111111 1222 22344556666666677777777777777775443 12333444455666666
Q ss_pred cCCHHHHHHHHHhhccCC
Q 048794 485 NEEVDLAMKMLYEMTPRN 502 (967)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~ 502 (967)
..+...|...++.+...+
T Consensus 574 ~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 677777777777776554
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=4.4e-13 Score=141.62 Aligned_cols=589 Identities=14% Similarity=0.095 Sum_probs=340.4
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048794 108 NLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASS 187 (967)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 187 (967)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-+..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56777788889999999999999999999999888 8888877767778888899888888888776664
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHH
Q 048794 188 HQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMR-GEGILPNLHTYN 266 (967)
Q Consensus 188 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 266 (967)
.|.+.+|..|+.+|...||+.....+-+.+ ..+...+...|.-.....++-.+. ..+.-|+...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdL------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDL------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHH------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 677788999999999999876622222212 223333445555544444444422 2233345443
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 048794 267 TLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSA-DPGKALETFEKMKIRGIVPNVVSCNASLYSLAET 345 (967)
Q Consensus 267 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (967)
.+......|-|+.+++++..+....... ++..+++-+.... .+++.........+ .|++.++..++.+....
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 3333445677787777776654332111 1222233333222 23333333333332 57899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 346 GRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMF 425 (967)
Q Consensus 346 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 425 (967)
|+.+.|..++..|++.|++.+..-|..++-+ .++...+..++..|.+.|+.|+..|+...+..+..+|....+
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~---- 290 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG---- 290 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc----
Confidence 9999999999999999999988888777654 788888889999999999999999998888877775542211
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-----CH-----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 426 CRMKDMKLAPTVVTYNTLLSGLGKEG-----QV-----QKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKML 495 (967)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (967)
+.+. +....+++-+..-.-.| +. .-....+++..-.|......+|....+ ...+|.-++..++.
T Consensus 291 ----~e~s-q~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlv 364 (1088)
T KOG4318|consen 291 ----EEGS-QLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLV 364 (1088)
T ss_pred ----cccc-chhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHH
Confidence 2222 23333333333322233 11 111222222222343333344443333 23367777777776
Q ss_pred HhhccCCCC---CCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048794 496 YEMTPRNCW---PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIG 572 (967)
Q Consensus 496 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 572 (967)
..+..--.. .+...+..+ +.++|.++... .....++ ..++... ..-.++...+.+....-.
T Consensus 365 g~l~npt~r~s~~~V~a~~~~------------lrqyFrr~e~~--~~~~i~~-~~qgls~-~l~se~tp~vsell~~lr 428 (1088)
T KOG4318|consen 365 GQLLNPTLRDSGQNVDAFGAL------------LRQYFRRIERH--ICSRIYY-AGQGLSL-NLNSEDTPRVSELLENLR 428 (1088)
T ss_pred hhhcCCccccCcchHHHHHHH------------HHHHHHHHHhh--HHHHHHH-HHHHHHh-hhchhhhHHHHHHHHHhC
Confidence 666432111 122223222 33444444331 1111111 1111111 111111111111111111
Q ss_pred CCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCC--C----CCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCC
Q 048794 573 TRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGI--C----RDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTS 646 (967)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 646 (967)
+....+...++-.. .+.+... + ....+...+...++..-+..++...-+++.. ..
T Consensus 429 kns~lr~lv~Lss~---------------Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~----~l 489 (1088)
T KOG4318|consen 429 KNSFLRQLVGLSST---------------ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED----LL 489 (1088)
T ss_pred cchHHHHHhhhhHH---------------HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 11111111111111 0111111 1 1122334445566666666666655554422 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--hhhHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGC--APDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN--TISHN 722 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 722 (967)
.+..|..|+..++..+..+.|..++.+...... .-+..-+..+.+...+.+....+..++.++.+.-...+ ..++.
T Consensus 490 f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f 569 (1088)
T KOG4318|consen 490 FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILF 569 (1088)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHH
Confidence 347788999999999999999999888875421 22444566778888899999999999988876422212 34566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 048794 723 IVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 723 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 781 (967)
.+.+.....|+.+.-.+.++-+.+.|...+ ..+.....+.++.+.|+++.+...+
T Consensus 570 ~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 570 PLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred HHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHH
Confidence 777777888888887777777776654332 2334455566777777777766554
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.6e-14 Score=140.59 Aligned_cols=234 Identities=14% Similarity=0.072 Sum_probs=172.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLS 764 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 764 (967)
++...+..+.-.|+.-.|..-|+.+++..+.++. .+-.+..+|...++.++-...|..+...+ +.++.+|...+..+.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHH
Confidence 3344444556678888888888888887533332 26677778888888888888888888874 455668888888888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 843 (967)
-.+++++|+.-|++++...+ .+...|..++-+..+.+++++++..|++..+. -|+ +..|+..+.++.-++++++|.
T Consensus 406 lL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 88889999999998888632 24557777877777888889999999988874 565 678888888888888999999
Q ss_pred HHHHHHHHCCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHH
Q 048794 844 HYFEELKLNGLDAD---------TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 844 ~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 913 (967)
+.|+.+++. .|. +.+.-.++... =.+++..|..+++++++ +.|.. -++..|+......|+.++|+
T Consensus 483 k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 483 KQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHhh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 999888863 222 22222222222 33788889999888885 66766 56678888888889999999
Q ss_pred HhhcCCCcCCCCccc
Q 048794 914 KLAGGNCFVQPSEFV 928 (967)
Q Consensus 914 ~~~~~~l~~~p~~~~ 928 (967)
.+|++++.+.-....
T Consensus 558 elFEksa~lArt~~E 572 (606)
T KOG0547|consen 558 ELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHHHHhHHH
Confidence 999888766554443
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.9e-15 Score=140.51 Aligned_cols=295 Identities=16% Similarity=0.179 Sum_probs=239.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCC
Q 048794 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT------ISHNIVISGLVKSNS 733 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 733 (967)
-.++.++|++.|.+|.+.. +.+..+..+|++.|.+.|..|.|+.+.+.+..+ ||. .+...++.-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 4578999999999999854 346777889999999999999999999999875 343 345677788999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV----IYNILINGFGKTGDVETACE 809 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~ 809 (967)
++.|.++|..+...+ .....+...++..|-...+|++|+.+-+++.+.+..+..+ .|+.++..+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999998863 4445578889999999999999999999998875554432 68888888888899999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048794 810 LFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 810 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 888 (967)
.+.++++. .|+ ..+-..++.+....|+++.|.+.|+.+.+.+...-+.+...|..+|.+.|+.++....+.++.+
T Consensus 202 ~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-- 277 (389)
T COG2956 202 LLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-- 277 (389)
T ss_pred HHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 99999985 565 5667788999999999999999999999976555678899999999999999999999999986
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeee---ccCCCccc----ccchhhhhhcccccccc
Q 048794 889 ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIY---AENPRATS----LSHKHCEYLASSCTFVC 961 (967)
Q Consensus 889 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~---~~~g~~~~----~~~~~~~~~~~~~~~~~ 961 (967)
..++.+....+........-.+.|..++.+.+...|+-...+.|-.+. .+.|++.+ ..+...+.++++|+++|
T Consensus 278 ~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 278 TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 455666666677666666667899999999999999988874333332 33444433 34455688999999999
Q ss_pred cc
Q 048794 962 PY 963 (967)
Q Consensus 962 ~~ 963 (967)
.+
T Consensus 358 ~~ 359 (389)
T COG2956 358 QN 359 (389)
T ss_pred cc
Confidence 75
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.4e-12 Score=136.31 Aligned_cols=428 Identities=12% Similarity=0.024 Sum_probs=269.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhc--CCChhHHH
Q 048794 468 CFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWL--YPDHITLC 545 (967)
Q Consensus 468 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 545 (967)
+.-|..+|..+.-+....|+++.+.+.|++....-+. ....|..+...|...|.-..|..+++...... |+++..+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456777777777778888888888888888765432 56677778888888888888888888776655 66677766
Q ss_pred hHHHHHH-hcCChhHHHHHHHHHHhhcCCC-c----chhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHH
Q 048794 546 TLLPGVV-KDGQIEDAFRLAKCSIYQIGTR-A----ERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPII 619 (967)
Q Consensus 546 ~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 619 (967)
.....|. +.+..++++++..+++...+.. . ....+....-+......+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~------------------------- 452 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL------------------------- 452 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC-------------------------
Confidence 6666654 4688888888888777632110 0 0000000000000000000
Q ss_pred HHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCh
Q 048794 620 KLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRV 699 (967)
Q Consensus 620 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 699 (967)
-..+.-...++.+.++++++..+..+ .+...++--|...++.++|.+..++.++-+...+...|..++-.+...+++
T Consensus 453 -~seR~~~h~kslqale~av~~d~~dp--~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 453 -KSERDALHKKSLQALEEAVQFDPTDP--LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred -hHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 01112233456667777766554444 445555566778889999999999999886677889999999899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCC------ChhcHHHHHHHHHcCCCHHH
Q 048794 700 EELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG-G-FSP------TPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~------~~~~~~~l~~~~~~~g~~~~ 771 (967)
.+|+++.+.+.... +.|......-+..-..-++.++|++....++.- . ..+ .......-.......++..+
T Consensus 530 ~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 530 KEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence 99999998887652 223333333344444567777777766554432 0 000 00000000000111112222
Q ss_pred HHHHHHHHH--------HCC-----------CCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHH
Q 048794 772 AKKLFEEML--------DYG-----------CKPN------CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKS 825 (967)
Q Consensus 772 A~~~~~~~~--------~~~-----------~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~ 825 (967)
|.+....+. ..+ ..|+ ...|...+..+...++.++|...+.++.. +.|- ...
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~ 686 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASV 686 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHH
Confidence 222222111 001 0122 11455666677788888888877777766 3454 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALS--LFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
|+..+..+...|++.+|.+.|..++..+ +........++.++.+.|+..-|.. ++..+++. -+.+.++|..++.++
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVF 764 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHH
Confidence 7777888888888888888888888743 2245567788888888887666666 88888864 233458888888888
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+.|+.++|...|.-++.+++.+|+-
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCCCcc
Confidence 88888888888888888888888873
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.5e-16 Score=163.26 Aligned_cols=286 Identities=13% Similarity=0.052 Sum_probs=229.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHH
Q 048794 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT----ISHNIVISGLVKSNSID 735 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 735 (967)
..-+..+|+..|......- .-+..+...++.+|...+++++|.++|+.+.+. .|-. ..+...+. +.. -+
T Consensus 331 s~y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LW---HLq-~~ 403 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLW---HLQ-DE 403 (638)
T ss_pred HHHHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHH---HHH-hh
Confidence 3446789999999855542 334577788999999999999999999999876 3322 23333222 222 23
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 736 KAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
-++.++.+-+....+..+.+|..++++|.-+++.+.|++.|+++++. .| ...+|..++--+.....+++|...|+.+
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 34444444444335667789999999999999999999999999985 45 5668888888888899999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 815 IKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 815 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
+. +.|. -.+|+.++.+|.+.++++.|.-.|+++++.+ +.+.+..+.++.++.+.|+.++|+++++++... -+.|+
T Consensus 482 l~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~ 557 (638)
T KOG1126|consen 482 LG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNP 557 (638)
T ss_pred hc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCc
Confidence 98 5776 4799999999999999999999999999854 336778889999999999999999999999853 23455
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhccccc
Q 048794 894 YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASSCT 958 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 958 (967)
-.-...+.+++..+++++|...++++-++.|++... +.+|.+|-+.|+.+.|..+.-=..+.||+
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 677788999999999999999999999999999998 69999999999999988844344444444
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=6.3e-18 Score=171.86 Aligned_cols=254 Identities=17% Similarity=0.129 Sum_probs=95.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRG-CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 766 (967)
.++..+.+.|++++|++++.+..... .+.+...|..++......++++.|+..++++...+. ..+..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44566666677777777775544332 233444455555555666777777777777766532 233445555555 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG-IRPDLKSYSVLVDCLCMVGRVDDALHY 845 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 845 (967)
+++++|.+++++..+. .++...+..++..+...++++++..+++++.... .+++...|..++.++.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776654 3455556666667777777777777777766531 233456667777777777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 846 FEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
++++++.. +.+......+++++...|+.+++.++++...+. .+.++..+..++.++...|++++|..++++++..+|+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 88877642 335666777777777788777777777777653 3555667777777888888888888888888877888
Q ss_pred cccc-ccceeeeccCCCcccccc
Q 048794 926 EFVS-SELQVIYAENPRATSLSH 947 (967)
Q Consensus 926 ~~~~-~~l~~~~~~~g~~~~~~~ 947 (967)
||.+ .++|.++...|+.++|+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp -HHHHHHHHHHHT----------
T ss_pred ccccccccccccccccccccccc
Confidence 8887 578888888888877776
No 47
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=9.2e-10 Score=118.14 Aligned_cols=817 Identities=14% Similarity=0.139 Sum_probs=385.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRIL 132 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (967)
..|-.-...+..+|+|++|-.+--...+ |+--+..+.+..-..=...|+..-.+..|..+...| +.|...-.-+.+.-
T Consensus 361 ~Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpV 438 (1666)
T KOG0985|consen 361 NLFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPV 438 (1666)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 3444445556678888888777655433 344555566655555556777777778888887777 55655555566666
Q ss_pred HhcCCHHHHHHHHHHHH-----hCC--CCC-C----HHH------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 048794 133 GRAGKIDEAYRILKRMD-----DEG--CGP-D----VVT------YTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVT 194 (967)
Q Consensus 133 ~~~g~~~~A~~~~~~~~-----~~~--~~~-~----~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 194 (967)
..+|+.+-..+++.+=. +.| ++| + ..+ .+.++.++...|.++++.-... +.|..||-.
T Consensus 439 L~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPdym- 514 (1666)
T KOG0985|consen 439 LQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPDYM- 514 (1666)
T ss_pred HhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCccHH-
Confidence 66777666666664321 111 111 1 111 2345555566666665554433 345667643
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHh
Q 048794 195 YITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTY-NTLICGLL 273 (967)
Q Consensus 195 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~ 273 (967)
.+++...+ -+++.+.++...+.+.. +....+..+...+......+.+...+-..++.. .|+.... ..++..-.
T Consensus 515 --flLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL 588 (1666)
T KOG0985|consen 515 --FLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNL 588 (1666)
T ss_pred --HHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHh
Confidence 34444444 56778888777776642 234445666677777777777777666665543 2333222 22222211
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCCcccHHHHHHHHHhcCCHHHH
Q 048794 274 RLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR--GIVPNVVSCNASLYSLAETGRIGEA 351 (967)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 351 (967)
. .|.++.+.+...+.- +..-...+...|.+.|-...|++.+.++..- .+..+...--..+..+...-.++++
T Consensus 589 -~----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s 662 (1666)
T KOG0985|consen 589 -V----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDS 662 (1666)
T ss_pred -c----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHH
Confidence 1 122222222222211 1112455666677777777777666554221 0000000011123334444556677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----------CCCCChhhHHHHHHHHHhcCCHHH
Q 048794 352 KTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN-----------GCEPDVIVMNTLIDTLYKADRVDE 420 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~ 420 (967)
.+.++.|...++..+..+...+..-|...-..+..+++|+..... ++.-|+.+.-..|.+.++.|++.+
T Consensus 663 ~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikE 742 (1666)
T KOG0985|consen 663 LECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKE 742 (1666)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHH
Confidence 777777776655555555444444444433344444444443221 123444455556677777777766
Q ss_pred HHHHHHHH------------HhCCC---------------CCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048794 421 AWEMFCRM------------KDMKL---------------APTVVTY------NTLLSGLGKEGQVQKAIELFEGMTDHG 467 (967)
Q Consensus 421 A~~~~~~~------------~~~~~---------------~~~~~~~------~~l~~~~~~~g~~~~a~~~~~~~~~~~ 467 (967)
..++.++- .+.++ .+|...| ...|..|.+.=+....-.+...+.+.+
T Consensus 743 vERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d 822 (1666)
T KOG0985|consen 743 VERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD 822 (1666)
T ss_pred HHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC
Confidence 66654431 11111 1111111 112222222222222222222222221
Q ss_pred CCCcHHHHHHHH-------------HHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHH-H---HHH
Q 048794 468 CFPNTVTFNTLL-------------HCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDA-I---WFF 530 (967)
Q Consensus 468 ~~~~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~---~~~ 530 (967)
++ ......|+ .-.-+.++...-...++..+..|.. ++.++++++..|..+++-.+- . ..|
T Consensus 823 C~--E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yY 899 (1666)
T KOG0985|consen 823 CS--EDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYY 899 (1666)
T ss_pred Cc--HHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcc
Confidence 11 11111111 1112223333334445555555533 667777777766654433221 1 011
Q ss_pred HHHH------hhcC--------------------CChhHHHhHHHHHHhcCChhHHH-----------HHHHHHHhh-cC
Q 048794 531 HQMR------KWLY--------------------PDHITLCTLLPGVVKDGQIEDAF-----------RLAKCSIYQ-IG 572 (967)
Q Consensus 531 ~~~~------~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~~~~-~~ 572 (967)
+... +..| +....+...++...+..+.+.=- .++.+.+.- -+
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 1110 0011 00111222222222222221111 111111111 11
Q ss_pred CCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCC-cchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHH
Q 048794 573 TRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDD-SVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMY 651 (967)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 651 (967)
...+++...-.+..++..+-|.+.+.++++++....+=+. ...-.+.-.-....+...+.++.+++-. . ..
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn-y--Da----- 1051 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN-Y--DA----- 1051 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc-C--Cc-----
Confidence 2222333333344444444444444444433322211111 1111111111112222233333333310 0 00
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
-.++......+-+++|..+|++.- .+..+...|+. .-+..|.|.++-++.. .+..|..+..+..+.
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhc
Confidence 011222233344445554444332 12222222222 2244455544433321 234677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
|...+|++.|-+ ..++..|..+++...+.|.|++-.+++..+.+...+|. +-..++.+|++.++..+-.++
T Consensus 1118 ~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~f- 1188 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEF- 1188 (1666)
T ss_pred CchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHH-
Confidence 777777776654 23455677777777777888877777777766543333 333556667777776653332
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 812 KQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 812 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
+. -|+......++.-|...|.++.|.-+|..+ ..|..|+..+...|+++.|.+.-+++-
T Consensus 1189 ---i~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1189 ---IA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred ---hc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 22 466666677777777777777777666532 236667777788888888777766653
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeeeccCCCcccc
Q 048794 892 DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATSL 945 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~~ 945 (967)
+..+|.....++...+.+.-|.-.=-.++ ...+... .|.++|...|=|+|.
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~ii-vhadeLe--eli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNII-VHADELE--ELIEYYQDRGYFEEL 1298 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEE-EehHhHH--HHHHHHHhcCcHHHH
Confidence 33566666666666666655532211111 1111111 477777777777763
No 48
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.8e-12 Score=124.17 Aligned_cols=445 Identities=15% Similarity=0.162 Sum_probs=239.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHH---HHHHHHHHHHcCCCCCHhhHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCRE---ALAVYKRVVSEGIKPSLKTYSA 92 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~~ 92 (967)
++.+-+.|++- ...|.+.++--+|+.|+..|...++..-..|+..-...+...- -.+.|-.|.+.| ..+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 67777777775 5678889999999999999887777666666555433332211 112222332222 1222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048794 93 LMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGR 172 (967)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 172 (967)
+.|+..+ ++-+.. |-+..++..+|..+++....+.|..++++.....++.+..++|.+|.+..-.
T Consensus 191 ------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 2222222 222221 2334455666666666666666666666655554455666666665543322
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHH-HH
Q 048794 173 LDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEV----VKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEE-AF 247 (967)
Q Consensus 173 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~ 247 (967)
...++..+|......||..|++.++.+.++.|+++. +.+++.+|.+-|+.|....|..++..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 114556666655566666666666666666665543 33445555555666666666666666665555433 33
Q ss_pred HHHHHHHh----CCCC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHhhcCC
Q 048794 248 SILDLMRG----EGIL----PNLHTYNTLICGLLRLDRVEEALEVFNNMEILG----VQPTA---YTYILFIDYYGKSAD 312 (967)
Q Consensus 248 ~~~~~~~~----~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~ 312 (967)
.++.++.+ +..+ .+...|...+..|.+..+.+-|.++..-+.... +.|+. .-|..+....+....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 1111 123334445555555555555555544443221 12221 123334444455555
Q ss_pred hhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-Ch---h----
Q 048794 313 PGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVG-QV---D---- 384 (967)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~---- 384 (967)
.+.....++.|+..-.-|+..+...++.+....|.++-.-++|..++..|.........-++..+++.. ++ +
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 566666666666655555666666666666666666666666666665554333333333333333322 11 0
Q ss_pred ------HHHHH-------HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C---CCCHHHHHHHHHHH
Q 048794 385 ------EAVTL-------LSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMK-L---APTVVTYNTLLSGL 447 (967)
Q Consensus 385 ------~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~---~~~~~~~~~l~~~~ 447 (967)
-|..+ -..+.+ ........+.++-.+.+.|+.++|++++..+...+ - .|.......+++.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 01111 112222 24455677888888899999999999999885432 2 23444444666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 048794 448 GKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLC 483 (967)
Q Consensus 448 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (967)
...++...|..+++-|...+.+.-...-..+...|.
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 778899999999999877654332323333444443
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.4e-13 Score=133.88 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=184.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI 734 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 734 (967)
+.-+.-.|+.-.|...|+..++..+.++. .|..++.+|...++..+....|+.+...+ +.++.+|..-++.+.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 34455789999999999999987544333 37788889999999999999999999987 56888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
++|..-|+++++.. +.....|-.+.-+..+.++++++...|+++.+. ++..+.+|+-.+.++..++++++|++.|+.+
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999999863 334456777777778889999999999999986 4556779999999999999999999999999
Q ss_pred HhCCCCCC-------HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 815 IKGGIRPD-------LKSYSVLVDCLC-MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 815 ~~~~~~p~-------~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++ +.|. ...+.+-+.+.. -.+++..|.+++.++++.+ +....++..|+..-..+|+.++|+++|++...
T Consensus 489 i~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred Hh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98 4554 223333333222 3478999999999999854 33566899999999999999999999999873
No 50
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.9e-10 Score=120.14 Aligned_cols=767 Identities=13% Similarity=0.137 Sum_probs=400.9
Q ss_pred cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHH
Q 048794 12 IINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYS 91 (967)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 91 (967)
+++.--..|..-|+.+...|++++|-.+-....+. +-.++.+.+.+=.+-...|+..-.+..|..+...| +.|..--.
T Consensus 355 nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrg-ILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETL 432 (1666)
T KOG0985|consen 355 NLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRG-ILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETL 432 (1666)
T ss_pred CCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchh-hhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHH
Confidence 44444555666677777778877776665555442 23366777777666677788877888888888877 44444333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH-----HcC--CCC-c----HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048794 92 ALMVAAGKRRNIKTVMNLLEEME-----RLG--LRP-N----VY------TFTICIRILGRAGKIDEAYRILKRMDDEGC 153 (967)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~-----~~~--~~~-~----~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 153 (967)
-+.+--..+|+.+...+.+.+=+ +.| +.| | .. +..-.+.++..+|+++++.-...+ .|.
T Consensus 433 EL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kK---vGy 509 (1666)
T KOG0985|consen 433 ELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKK---VGY 509 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHH---cCC
Confidence 44444455565555555444321 111 111 1 01 112345566666777666655443 244
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHhhHH-------------HHHHHHHccCCHHHH--------
Q 048794 154 GPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSH-QPDQVTYI-------------TLLDKFSDCGNIEVV-------- 211 (967)
Q Consensus 154 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~-------------~ll~~~~~~~~~~~a-------- 211 (967)
.|+. -.+++...+ -+++++.++...+.+... ..|..... +++-...+...++..
T Consensus 510 TPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE 585 (1666)
T KOG0985|consen 510 TPDY---MFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLE 585 (1666)
T ss_pred CccH---HHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHH
Confidence 5554 445555554 466777777766665322 11211111 111111121222211
Q ss_pred ------HHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHhcCCCHHH
Q 048794 212 ------KEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYN-----TLICGLLRLDRVEE 280 (967)
Q Consensus 212 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~~ 280 (967)
-++-+.++.++.. +..-+..+...|.+.|-...|++.+.++..- + ...+.. ..+..+...-.++.
T Consensus 586 ~NL~~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~ 661 (1666)
T KOG0985|consen 586 MNLVHAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVED 661 (1666)
T ss_pred HHhccchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHH
Confidence 1112222222222 1122566778888999999999888766431 0 011111 12345555667899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-----------CCCCCcccHHHHHHHHHhcCCHH
Q 048794 281 ALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR-----------GIVPNVVSCNASLYSLAETGRIG 349 (967)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~ 349 (967)
+.+.+..|...+++.+..+...+..-|...-..+..+++|+..... ++..|+...-..+.+.++.|++.
T Consensus 662 s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qik 741 (1666)
T KOG0985|consen 662 SLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIK 741 (1666)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHH
Confidence 9999999999888888888877777777777777778888776543 23456666677788888999888
Q ss_pred HHHHHHHHH------------HHCCC---CC-----CHHHHHHHHHHHHHcCChhHHHHHH-------------HHHHHC
Q 048794 350 EAKTIFNGL------------KNSGF---AP-----DSVTYNMMMKCYSKVGQVDEAVTLL-------------SEMVEN 396 (967)
Q Consensus 350 ~a~~~~~~~------------~~~~~---~~-----~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~ 396 (967)
+..++-++- ++... .| |...|..=+-.|.-.++...-++++ ..+...
T Consensus 742 EvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~ 821 (1666)
T KOG0985|consen 742 EVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV 821 (1666)
T ss_pred HHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC
Confidence 877664321 11110 11 1111111112222222222222222 222111
Q ss_pred CCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048794 397 GCEPD-----------VIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTD 465 (967)
Q Consensus 397 ~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 465 (967)
+++-+ ......|..-.-+.++..--..+++.....|.. +..+++++...|..+++-.+-. ..
T Consensus 822 dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~f------Lk 894 (1666)
T KOG0985|consen 822 DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERF------LK 894 (1666)
T ss_pred CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHh------cc
Confidence 11000 000111222233344444444455555555543 6667777776666544432211 11
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcc----CCCCCCHHHHHHHHHHHhhcCcHhHH-----------HHHH
Q 048794 466 HGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTP----RNCWPDVLTYNTIIYGLVKEQRVKDA-----------IWFF 530 (967)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A-----------~~~~ 530 (967)
.+..-|.. .+.-||...+...|.-.+++-.- -++......+......+....+.+-- +.+.
T Consensus 895 eN~yYDs~----vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLi 970 (1666)
T KOG0985|consen 895 ENPYYDSK----VVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLI 970 (1666)
T ss_pred cCCcchhh----HHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHH
Confidence 10000111 11112222221111100000000 00001111222222222222222211 2333
Q ss_pred HHHHhh---cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcC
Q 048794 531 HQMRKW---LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 531 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
++.... ...|+........++...+...+-++++++.+..++.-.+-..++.++-....+..+.....+...+-.
T Consensus 971 DqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn-- 1048 (1666)
T KOG0985|consen 971 DQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN-- 1048 (1666)
T ss_pred HHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc--
Confidence 443332 224555566677888889999999999999998887766666666665433333333332233222211
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN 687 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (967)
.-...++..-...+-+++|...|.++ ..+..+...++. .-+..+.|.++-++.. ....|.
T Consensus 1049 -----yDa~~ia~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWs 1108 (1666)
T KOG0985|consen 1049 -----YDAPDIAEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWS 1108 (1666)
T ss_pred -----CCchhHHHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHH
Confidence 11223455666677788888888776 334444444443 3345666665554433 345677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG 767 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 767 (967)
.++.+-.+.|...+|++-|-++ .|+..+..++....+.|.+++-..++..+.+....|. +-..++-+|.+.+
T Consensus 1109 qlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhc
Confidence 7888888888888888777553 2556677788888888888888888777776643333 3455677788877
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
+..+-..+ +. .|+.......+.-+...|.++.|.-+|....+ |..|+..+...|++..|.....
T Consensus 1181 rl~elE~f----i~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1181 RLTELEEF----IA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hHHHHHHH----hc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhh
Confidence 76654332 32 35555556666666666677666666654432 4555555555566665555544
Q ss_pred H
Q 048794 848 E 848 (967)
Q Consensus 848 ~ 848 (967)
+
T Consensus 1245 K 1245 (1666)
T KOG0985|consen 1245 K 1245 (1666)
T ss_pred h
Confidence 3
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=2.4e-16 Score=160.24 Aligned_cols=261 Identities=19% Similarity=0.196 Sum_probs=101.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 653 YLIHGLLEVHATEMGLDLFTTMKNAG-CAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 653 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
.++..+...|++++|++++++..... .+.+...|..++......+++++|+..|+++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666667777777777775544332 23345556666777777788888888888887664 2244455555555 677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYG-CKPNCVIYNILINGFGKTGDVETACEL 810 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 810 (967)
+++++|.+++....+.. +++..+...+..+.+.|+++++..+++++.... .+.+...|..++.++.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888777766542 344456667777888888888888888876532 234666788888888888888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 811 FKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 811 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
|+++++ ..|+ ......++..+...|+.+++.+.++...... +.++..+..++.++...|++++|...++++.+. .
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 888888 4675 5677788888888888888777777766532 345556777888888888888888888888764 4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 890 SPDLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 890 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
|.|+.+...++.++...|+.++|..+.++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 55678888888888888888888888887764
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=2.4e-09 Score=109.87 Aligned_cols=229 Identities=17% Similarity=0.141 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh-hhHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT-ISHNIVI 725 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 725 (967)
+...|...+..-...|-++....+|+++++..+. +.......+..+..+..++++.+.|++-+.....|+. ..|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 4456666677777788888888899998876432 3333334444566677788999998887766544543 3455444
Q ss_pred HHHH---hcCCHHHHHHHHHHHHhCCCCCCh--hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 048794 726 SGLV---KSNSIDKAMDLFYNLVSGGFSPTP--CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC--VIYNILINGF 798 (967)
Q Consensus 726 ~~~~---~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~ 798 (967)
.-.. .....+.|.++|+++++. -+|.. ..|...+..-.+.|-...|+.+|+++... +++.. ..|+..+.--
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDG-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 4332 335688999999999984 34432 23444455556678888999999998764 33222 2566555433
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 048794 799 GKTGDVETACELFKQMIKGGIRPDLKS---YSVLVDCLCMVGRVDDALHYFEELKLN-GLDADTISYNFMINGLGRSGRI 874 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 874 (967)
...=-......+|+++++. -|+..+ ....+..-.+.|..+.|..+|.-..+. +.+.+...|...-..-.+.|+-
T Consensus 633 ae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 2222234457788888883 666433 334466677889999999998766543 2233667788887778899985
Q ss_pred HHHHHH
Q 048794 875 EEALSL 880 (967)
Q Consensus 875 ~~A~~~ 880 (967)
+.-.++
T Consensus 711 dT~keM 716 (835)
T KOG2047|consen 711 DTYKEM 716 (835)
T ss_pred HHHHHH
Confidence 443333
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=4.7e-09 Score=107.77 Aligned_cols=658 Identities=13% Similarity=0.117 Sum_probs=317.5
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH---Hc-----cCCHHHHHHHHH
Q 048794 40 LEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAA---GK-----RRNIKTVMNLLE 111 (967)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~-----~~~~~~a~~~~~ 111 (967)
|+.=+-+++. +.-+|-..|...... -.+...-+|+++.+. ++-|...|...+..= .+ ...+......|+
T Consensus 16 fEeEilRnp~-svk~W~RYIe~k~~s-p~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~e 92 (835)
T KOG2047|consen 16 FEEEILRNPF-SVKCWLRYIEHKAGS-PDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFE 92 (835)
T ss_pred hHHHHHcCch-hHHHHHHHHHHHccC-ChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence 4443344443 777887777665442 234455667777664 455555655555221 11 112333333333
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048794 112 EMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE-GCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQP 190 (967)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 190 (967)
...-.-. .-...|...+..+.++|++..-+..|++.... .+.....+|...+......+-++-+..+|+...+. .|
T Consensus 93 r~lv~mH-kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P 169 (835)
T KOG2047|consen 93 RCLVFMH-KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP 169 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH
Confidence 3332110 12345666677777777777777777766543 12223345666666666677777777777776653 22
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCcHhHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCC
Q 048794 191 DQVTYITLLDKFSDCGNIEVVKEFWSQMVADG------YAADVVTYTIFVDALCKVGNVEE---AFSILDLMRGEGILPN 261 (967)
Q Consensus 191 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~ 261 (967)
..-.-.+..+...+++++|.+.+..++... .+.+-..|..+....++..+.-. ...++..+...-..--
T Consensus 170 --~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 170 --EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred --HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 224445555666677777766666665331 12233444444444444333221 2222222222110011
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCcccHHHHHH
Q 048794 262 LHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR-GIVPNVVSCNASLY 340 (967)
Q Consensus 262 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 340 (967)
...|..|..-|.+.|.++.|.++|++.... .....-|..+.++|+.......+..+= -..+. +..-+..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~------- 317 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV------- 317 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------
Confidence 223445555555555555555555554432 222333333333333321111111000 00000 0000000
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------hh
Q 048794 341 SLAETGRIGEAKTIFNGLKNS-----------GFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPD------VI 403 (967)
Q Consensus 341 ~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 403 (967)
+++-...-|+.+... ..+.++..|..-+.. ..|+..+-...+.++++. +.|. ..
T Consensus 318 ------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 318 ------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 011111111111111 112222333322221 123344444444444432 1111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 404 VMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPT---VVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 404 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
.|..+...|-..|+.+.|+.+|++......+.- ..+|..-...-.++.+++.|+++.++.... |.... .
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~ 460 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----L 460 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----h
Confidence 344444445555555555555555444321100 122333333333444455555544444321 11111 1
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
.+...+..-.+. + ..+..+|...+..-...|-++....+|+++.+.....+......+..+..+.-++++
T Consensus 461 ~~yd~~~pvQ~r--l--------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 461 EYYDNSEPVQAR--L--------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred hhhcCCCcHHHH--H--------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence 122222211111 0 124556777777777889999999999999988777788877778788888899999
Q ss_pred HHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHH
Q 048794 561 FRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTE 640 (967)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 640 (967)
++.|++.+...+-+.....|.. ++.++++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~t---------------------------------------------------YLtkfi~ 559 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNT---------------------------------------------------YLTKFIK 559 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHH---------------------------------------------------HHHHHHH
Confidence 9999887665543333322221 1222211
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh-hHHHH-HHHHHccCChHHHHHHHHHHHhCCCCCCh
Q 048794 641 NLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS-TYNLL-LDGYGKSGRVEELLKLYEEMSFRGCKPNT 718 (967)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 718 (967)
. ......+.|..+|++.++ |.+|... ++..+ +..-.+.|-...|+.+|+++... +++..
T Consensus 560 r-----------------ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~ 620 (835)
T KOG2047|consen 560 R-----------------YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQ 620 (835)
T ss_pred H-----------------hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHH
Confidence 1 123357888888888887 4344332 22222 22334558888899999887654 23222
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 048794 719 --ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP-CTYGPLIDGLSKSGRLEEAKKLFEEMLDYG-CKPNCVIYNIL 794 (967)
Q Consensus 719 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l 794 (967)
..|+..+.-....=-......+|+++++.-++... ......++.-.+.|..+.|..+|.-..+.. +..+...|.+.
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTW 700 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHH
Confidence 12333332222222334456777777776222222 122334566677888888888888776642 22345567777
Q ss_pred HHHHhccCCHHHHHHHHHHHHh
Q 048794 795 INGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
-..-.++|| .+.+++|++
T Consensus 701 k~FEvrHGn----edT~keMLR 718 (835)
T KOG2047|consen 701 KEFEVRHGN----EDTYKEMLR 718 (835)
T ss_pred HHHHHhcCC----HHHHHHHHH
Confidence 777778888 345555554
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.4e-12 Score=128.68 Aligned_cols=493 Identities=13% Similarity=0.044 Sum_probs=277.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 048794 156 DVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVD 235 (967)
Q Consensus 156 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (967)
+..-+..+++-+....++..|.-+-+++-..+..| .....+..++.-.|++++|..+...-.-. ..+.........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 44556666666666777777777777776554333 33344566666667777777766543221 236666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 048794 236 ALCKVGNVEEAFSILDLMRGEGILPNLHTYNTL--ICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADP 313 (967)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (967)
.+.+..++++|..++..... ..++..+..- .......+.. ++ .++......+..=...|....+.
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~~l~~n~~~--------~~--~~~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDAANTLELNSAG--------ED--LMINLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhhhceeccCccc--------cc--ccccchhceeeeeeehhhhhccH
Confidence 77788888888877763311 0011111000 0000000000 00 00011111111112234444555
Q ss_pred hhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCChhHHHHH
Q 048794 314 GKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGF----APDSVTYNMMMKCYSKVGQVDEAVTL 389 (967)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (967)
+.|...+.+.... |...+..+.. +..... -.+.+.|..+..... ..+......+.........-+.....
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~-lvs~~m-lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEK-LVSAHM-LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHH-HHHHHh-cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 6666666555543 3322222211 111110 011111111111100 11111111111111000000000000
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 390 LSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCF 469 (967)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 469 (967)
-....-.+...+........+-+...+++.+..++.+.+.+..+ +....+..-|.++...|+..+-..+-.++++. .|
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence 00000012234555666677778888999999999998887643 45555666666778888888888887888875 45
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHH
Q 048794 470 PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLP 549 (967)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 549 (967)
..+.+|.++..-|...|++.+|++.|.+....+. .-...|-.++..+.-.|.-+.|+..|..+.+..+.......-++.
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 6778888888888888999999999999887652 245678888888999999999999999999988888888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHH
Q 048794 550 GVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKAL 629 (967)
Q Consensus 550 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 629 (967)
-|.+.++++.|-+.+.+++... |.|+-+...++-+....+.+.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-------------------------------------P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-------------------------------------PSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-------------------------------------CCcchhhhhhhheeehHhhhH
Confidence 8999999999999888877654 455556666666666677777
Q ss_pred HHHHHHHHHHHhcC---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHH
Q 048794 630 AAKDLFVKFTENLG---VTS--TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLK 704 (967)
Q Consensus 630 ~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 704 (967)
+|..+|...+.... ... -..+++.|+..+.+.+.+++|+..|++.+... +.+..++..++-+|...|+++.|++
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH
Confidence 77777766541111 011 12334555555555555555555555555443 2345555555555555555555555
Q ss_pred HHHHHHhC
Q 048794 705 LYEEMSFR 712 (967)
Q Consensus 705 ~~~~~~~~ 712 (967)
.|++++..
T Consensus 511 ~fhKaL~l 518 (611)
T KOG1173|consen 511 HFHKALAL 518 (611)
T ss_pred HHHHHHhc
Confidence 55555543
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2.5e-13 Score=145.38 Aligned_cols=293 Identities=11% Similarity=-0.021 Sum_probs=141.1
Q ss_pred HHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChH
Q 048794 621 LFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVE 700 (967)
Q Consensus 621 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 700 (967)
.....|+++.|.+.+.+..+.. +.....+...+......|+++.|.+.+.+..+..+.+........+..+...|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 3345566666666665543321 11222233334455556666666666666554422222222233355555666666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH---HHcCCCHHHHHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDG---LSKSGRLEEAKKLFE 777 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~ 777 (967)
+|...++.+.+.. |.+...+..++..+...|++++|.+.+....+.+..+..........+ ....+..+++.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666666553 224445555566666666666666666666655322211110000011 111222222233444
Q ss_pred HHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 778 EMLDYGCK---PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS---YSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 778 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
++.+..+. .+...+..++..+...|++++|++.+++.++. .|+... ...........++.+++.+.+++.++
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44332110 24455555666666666666666666666653 333221 01111112223455556666655554
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 852 NGLDADT--ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 852 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
.. +.++ .....+++++.+.|++++|.+.++.+......|++..+..++.++.+.|+.++|.++++++
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 2233 4445566666666666666666663222224555555556666666666666666666654
No 56
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.64 E-value=8.3e-10 Score=118.89 Aligned_cols=548 Identities=11% Similarity=-0.031 Sum_probs=323.6
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 382 QVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFE 461 (967)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (967)
+...+...|-+..+.. +.-...|..|...|....+...|.+.|+.+.+.+.. +..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4566666666666543 222457888999888888999999999999887643 77888889999999999999998844
Q ss_pred HHHhCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCC
Q 048794 462 GMTDHGCFPNTV--TFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYP 539 (967)
Q Consensus 462 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (967)
...+.. +.-.. .|....-.|.+.++...|+.-|+.....+ +.|...|..++.+|..+|++..|.++|.++....|.
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 333321 11112 22223345778889999999999998876 348889999999999999999999999999988888
Q ss_pred ChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcc-----hhhHhhhhhhhcccCCCcchHHHHHHHHhcCCC----C
Q 048794 540 DHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAE-----RQFWQDLVGGILTVAGPDKSILFAEKLVCNGIC----R 610 (967)
Q Consensus 540 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 610 (967)
+...-...+......|.+.+|+..+...+........ .+.+..........+...++..+.++.+..-.. .
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 8888888888888899999999988877654321111 111111111112222222223333322211100 0
Q ss_pred --CC-cchHH---HHHHHHhhc-c--HHHHHHHHHH-H-------------------HHhcCCCCCHHHHHHHHHHHHh-
Q 048794 611 --DD-SVVVP---IIKLFCRQK-K--ALAAKDLFVK-F-------------------TENLGVTSTLEMYNYLIHGLLE- 660 (967)
Q Consensus 611 --~~-~~~~~---l~~~~~~~~-~--~~~a~~~~~~-~-------------------~~~~~~~~~~~~~~~l~~~~~~- 660 (967)
+. ..... ....++... + ...-...+.. + +...........|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 00 00000 000011100 0 0000000000 0 0000001111222223222221
Q ss_pred ------cC-ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 048794 661 ------VH-ATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS 733 (967)
Q Consensus 661 ------~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 733 (967)
.+ +...|+..+...++.. ..+...|+.|+-. ...|++.-|...|-+..... +....+|..++..+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEeccc
Confidence 11 1234555665555432 2345556666544 45566666666666666553 4455677777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD----YGCKPNCVIYNILINGFGKTGDVETACE 809 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 809 (967)
++-|...|.+..+.. |.+...|...+..-...|+.-++..+|..-.+ .|-.++...|.........+|+.++-+.
T Consensus 866 ~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 888888888877753 44455666666666777888888888776322 2333455556555556677777777666
Q ss_pred HHHHHHh--------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 810 LFKQMIK--------GGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGLDADTISYNFMINGLGRSGRIE 875 (967)
Q Consensus 810 ~~~~~~~--------~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~ 875 (967)
.-+++.. .+..|+ ..+|...+....+.+.+.+|.+...+.+. .+.....+.--.++..+...|.++
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 6555432 123455 57788888888888888888888887652 111222223335667777888888
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCC
Q 048794 876 EALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPR 941 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~ 941 (967)
.|........ ..-+..+. ...-.++..|+++++.+.|++++++.-++..- ..++.+.+-+|.
T Consensus 1025 ~A~~a~~~~~---~evdEdi~-gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1025 SAKKASWKEW---MEVDEDIR-GTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hHhhhhcccc---hhHHHHHh-hhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 7665544332 11122221 12223366789999999999999888777775 455555544443
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=7.1e-13 Score=141.96 Aligned_cols=227 Identities=15% Similarity=0.059 Sum_probs=158.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHh
Q 048794 654 LIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHN---IVISGLVK 730 (967)
Q Consensus 654 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~ 730 (967)
.+..+...|++++|...++.+.+..+ .+..++..++..+...|++++|.+++.++.+.+..+...... ........
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 35556677777777777777777642 245567777778888888888888888887764332221111 11111233
Q ss_pred cCCHHHHHHHHHHHHhCCCC---CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--H-HHHHHHHHhccCCH
Q 048794 731 SNSIDKAMDLFYNLVSGGFS---PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV--I-YNILINGFGKTGDV 804 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~-~~~l~~~~~~~~~~ 804 (967)
.+..+++.+.+..+....+. .++..+..++..+...|+.++|.+.+++.++.. ||.. . ...........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 33334444566666654321 366788888999999999999999999999863 3333 1 11122223455788
Q ss_pred HHHHHHHHHHHhCCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRPD-L--KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLF 881 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 881 (967)
+++++.+++.++. .|+ . .....+++++.+.|++++|.++|+++......|+...+..++.++.+.|+.++|.+++
T Consensus 316 ~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 316 EKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998884 565 3 4567899999999999999999996443335788888889999999999999999999
Q ss_pred HHHH
Q 048794 882 DEMK 885 (967)
Q Consensus 882 ~~~~ 885 (967)
++.+
T Consensus 394 ~~~l 397 (409)
T TIGR00540 394 QDSL 397 (409)
T ss_pred HHHH
Confidence 9876
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6e-12 Score=121.41 Aligned_cols=299 Identities=14% Similarity=0.043 Sum_probs=240.1
Q ss_pred HHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHH
Q 048794 622 FCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEE 701 (967)
Q Consensus 622 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (967)
++-.++...+...+-.+....-.+.+......++..+...|++++|+..|+.....++ -+.......+..+.+.|+++.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhh
Confidence 3445555666666666666667788999999999999999999999999999887642 234444455566788899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 048794 702 LLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 702 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 781 (967)
.-.+...+.... +....-|..-+......+++..|+.+-++.+..+ +.....+..-+.++...|+.++|.-.|+.+..
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888888877653 2334455556666778899999999999999874 44455777788899999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHHHCCCCCC-H
Q 048794 782 YGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLV-DCLCMV-GRVDDALHYFEELKLNGLDAD-T 858 (967)
Q Consensus 782 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~-g~~~~A~~~~~~~~~~~~~~~-~ 858 (967)
.. +.+..+|.-|+..|...|.+.+|.-+-+...+. ...+..++..++ .++... .--++|..++++.+.. +|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 63 236779999999999999999999999988774 344567777775 555443 3357899999999874 554 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+...+++.+...|++++++.++++.+. ..||....+.|+..+...+.+++|..+|..++++||+|..+
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 5678899999999999999999999985 67899999999999999999999999999999999999886
No 59
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.63 E-value=1.4e-09 Score=112.78 Aligned_cols=457 Identities=16% Similarity=0.138 Sum_probs=251.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHH
Q 048794 25 KALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIK 104 (967)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (967)
.+....|++.+|...++.... |+. ....|..+.......|+.--|.++|..+-. .++.+...
T Consensus 452 gaaid~~df~ra~afles~~~-~~d-a~amw~~laelale~~nl~iaercfaai~d----------------vak~r~lh 513 (1636)
T KOG3616|consen 452 GAAIDDGDFDRATAFLESLEM-GPD-AEAMWIRLAELALEAGNLFIAERCFAAIGD----------------VAKARFLH 513 (1636)
T ss_pred ccccccCchHHHHHHHHhhcc-Ccc-HHHHHHHHHHHHHHhccchHHHHHHHHHHH----------------HHHHHHHH
Confidence 455678888888887776653 322 446788888888888887777777654421 11222223
Q ss_pred HHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 105 TVMNLLEEMER-LGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKM 183 (967)
Q Consensus 105 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 183 (967)
+..++-.+... .|- ....-|..-........++.+|..+|-+- .+ -...+..|....+|++|+.+-+..
T Consensus 514 d~~eiadeas~~~gg-dgt~fykvra~lail~kkfk~ae~ifleq------n~---te~aigmy~~lhkwde~i~lae~~ 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGG-DGTDFYKVRAMLAILEKKFKEAEMIFLEQ------NA---TEEAIGMYQELHKWDEAIALAEAK 583 (1636)
T ss_pred HHHHHHHHHhHhhCC-CCchHHHHHHHHHHHHhhhhHHHHHHHhc------cc---HHHHHHHHHHHHhHHHHHHHHHhc
Confidence 33333333332 121 11122222222223334566666655321 01 123444555566666666554332
Q ss_pred HhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048794 184 KASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLH 263 (967)
Q Consensus 184 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 263 (967)
|.+.-...-.+.+.++...|+-++|-++-. +...-.+.+..|.+.|.+..|......-... ..|..
T Consensus 584 ---~~p~~eklk~sy~q~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~~~l--~~de~ 649 (1636)
T KOG3616|consen 584 ---GHPALEKLKRSYLQALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALNDEEL--LADEE 649 (1636)
T ss_pred ---CChHHHHHHHHHHHHHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCHHHh--hccHH
Confidence 222222333445555556666555544321 1111123456666666666655443211110 11444
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------------CCCCCHHHH-HHHHHHHhhcCChhhHHHHH
Q 048794 264 TYNTLICGLLRLDRVEEALEVFNNMEIL----------------------GVQPTAYTY-ILFIDYYGKSADPGKALETF 320 (967)
Q Consensus 264 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~ 320 (967)
....+..++.+..-+++|-.+|+++... .++....++ ..........|+++.|+..|
T Consensus 650 il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhf 729 (1636)
T KOG3616|consen 650 ILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHF 729 (1636)
T ss_pred HHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHH
Confidence 4444444444444444444444433210 011000000 01111122334444444443
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048794 321 EKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEP 400 (967)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 400 (967)
-+.. .....+.+......|.+|+.+++.++... .-..-|..+...|...|+++.|.++|.+.-
T Consensus 730 iea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~------ 792 (1636)
T KOG3616|consen 730 IEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD------ 792 (1636)
T ss_pred HHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc------
Confidence 2221 12334556677788899999998888763 233456777888999999999999886542
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 401 DVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
.++..|.+|.+.|+|++|.++-.+.. ++......|..-..-+-.+|++.+|.+++-.+- .|+ ..+.
T Consensus 793 ---~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiq 858 (1636)
T KOG3616|consen 793 ---LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQ 858 (1636)
T ss_pred ---hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHH
Confidence 35667888999999999998876654 334455666666666777888998888765442 233 2356
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
+|-+.|..+..+++..+-...- -..+...+..-+...|+...|...|-+..+ +......|...+-+++|
T Consensus 859 mydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 859 MYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDA 927 (1636)
T ss_pred HHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHH
Confidence 7888898888888887765431 234556677778889999999888766554 33444555566666666
Q ss_pred HHHHH
Q 048794 561 FRLAK 565 (967)
Q Consensus 561 ~~~~~ 565 (967)
.+..+
T Consensus 928 yriak 932 (1636)
T KOG3616|consen 928 YRIAK 932 (1636)
T ss_pred HHHHh
Confidence 65543
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=9.3e-13 Score=140.06 Aligned_cols=286 Identities=10% Similarity=0.054 Sum_probs=169.4
Q ss_pred HhhccHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCcCHh--hHHHHHHHHHccCCh
Q 048794 623 CRQKKALAAKDLFVKFTENLGVTSTLEMYNYL-IHGLLEVHATEMGLDLFTTMKNAGCAPDIS--TYNLLLDGYGKSGRV 699 (967)
Q Consensus 623 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 699 (967)
...|+++.|.+.+.+.... .+.+..+..+ +......|+++.|...+.++.+. .|+.. .....+..+...|++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 3357777777666554221 2223333333 33336777777777777777664 23332 222335566777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------cHHHHHHHHHcCCCHHHH
Q 048794 700 EELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPC-------TYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A 772 (967)
++|...++++.+.. |.+......+...|...|++++|..++.++.+....+... ++..+........+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777777664 3345566666777777777777777777777654322111 122222222223334444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.++++...+. .+.+......++..+...|+.++|...+++.++. .|+.......+ ....++.+++++..++..+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~~--~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLIP--RLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHh--hccCCChHHHHHHHHHHHhh
Confidence 4555544332 1335556667777777777777777777777763 44443222222 22346777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
. +.++..+..++.++.+.|++++|.+.|+.+++ ..|+...+..++.++.+.|+.++|.+++++++.+
T Consensus 324 ~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 H-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2 44556666777777777777777777777774 4567766667777777777777777777777654
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.9e-13 Score=143.95 Aligned_cols=283 Identities=11% Similarity=-0.001 Sum_probs=216.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhh-HHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHH
Q 048794 660 EVHATEMGLDLFTTMKNAGCAPDIST-YNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI--SHNIVISGLVKSNSIDK 736 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 736 (967)
..|++++|++......+.. ++... +...+....+.|+++.|..++.++.+. .|+.. ........+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 4799999998887766542 22233 333344558899999999999999886 44443 22344678899999999
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCCHHHHHH
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV-------IYNILINGFGKTGDVETACE 809 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~ 809 (967)
|...+++..+.. |.++.++..++.+|.+.|++++|.+++.++.+.+..++.. +|..+........+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999875 5566788899999999999999999999999865432221 22223333334445566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 810 LFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 810 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
+++...+. .+.+......++..+...|+.++|...+++..+. ++++...... .....|+.+++.+.+++..+. .
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~--~~l~~~~~~~al~~~e~~lk~-~ 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLI--PRLKTNNPEQLEKVLRQQIKQ-H 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH--hhccCCChHHHHHHHHHHHhh-C
Confidence 67766443 3445778899999999999999999999999873 5566433323 334569999999999999974 5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeeeccCCCcccccchhhhhh
Q 048794 890 SPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATSLSHKHCEYL 953 (967)
Q Consensus 890 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 953 (967)
|.|+..+..++..+.+.|++++|.++++++++.+|++.....++.++.+.|+.++|...+.+-+
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566888999999999999999999999999999999988899999999999999877444433
No 62
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.61 E-value=1.1e-08 Score=110.46 Aligned_cols=671 Identities=12% Similarity=0.019 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048794 103 IKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLK 182 (967)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 182 (967)
...+...|-+..+.. +.=...|..+...|+.--+...|.+-|++..+.+ ..+...+......|.+..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 344444444444332 1123456667777776667777777777776653 34556677777777777788777777332
Q ss_pred HHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048794 183 MKASS-HQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPN 261 (967)
Q Consensus 183 ~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 261 (967)
..+.. .......|....-.|...++...+..-|+..++.. +.|...|..+..+|.++|++..|.++|......+ |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 22211 01111122223334556667777777777766654 3367777778888888888888888887766542 22
Q ss_pred HHHHH--HHHHHHhcCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcc
Q 048794 262 LHTYN--TLICGLLRLDRVEEALEVFNNMEIL------GVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVV 333 (967)
Q Consensus 262 ~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 333 (967)
..|. ......+..|.+.+++..+...... +...-..++......+...|-..++.+.+++.++.
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~------- 700 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES------- 700 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------
Confidence 2222 2223344567777777777765432 11222344444444444445555555555543332
Q ss_pred cHHHHHHHHHhc-CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---h---HHHHHHHHHHHCCCCCChh
Q 048794 334 SCNASLYSLAET-GR---IGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQV---D---EAVTLLSEMVENGCEPDVI 403 (967)
Q Consensus 334 ~~~~l~~~~~~~-g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~ 403 (967)
....+....... -. ..+|..+|...... .|+......+..-.-..+.. | -+.+.+-.-.+ ...+..
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~--~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~ 776 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPS--IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMY 776 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc--chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccc
Confidence 000000000000 00 11223333333211 12222111111101111111 1 00111100000 011222
Q ss_pred hHHHHHHHHHh----c----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHH
Q 048794 404 VMNTLIDTLYK----A----DRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTF 475 (967)
Q Consensus 404 ~~~~l~~~~~~----~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 475 (967)
.|..++..|.+ . .+...|+..+++..+..- .+..+|+.|.-. ...|++.-+.-.|-+-... -+....+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhhe
Confidence 33333332222 1 112234444444433221 234444444332 2234444444443333322 12233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHH-----hhcCCChhHHHhHHHH
Q 048794 476 NTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR-----KWLYPDHITLCTLLPG 550 (967)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~l~~~ 550 (967)
..+.-.+....+++.|...|......+ +.+...|..........|+.-++..+|..-- +...+...-+......
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 444444445555555555555544443 1133333333333334444444444444311 1122222223333333
Q ss_pred HHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHH
Q 048794 551 VVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALA 630 (967)
Q Consensus 551 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 630 (967)
...+|+.++-+...+++ ..
T Consensus 933 h~~Ng~~e~~I~t~~ki-------------------------------------------------------------~s 951 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKI-------------------------------------------------------------SS 951 (1238)
T ss_pred HHhccchHHHHHHhhhh-------------------------------------------------------------hh
Confidence 33444433333322211 11
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCcCHhhHHHHHHHHHccCChHHHHHH
Q 048794 631 AKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA-----GCAPDISTYNLLLDGYGKSGRVEELLKL 705 (967)
Q Consensus 631 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 705 (967)
|.-.++++. .+.+.+..+|...+......+.+..|.....+.+.- ........-...++.+...|+++.|...
T Consensus 952 As~al~~yf--~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 952 ASLALSYYF--LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hHHHHHHHH--hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 111111111 124566677777777777777777777666655431 0011122333456677778888876654
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 048794 706 YEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPTP-CTYGPLIDGLSKSGRLEEAKKLFEEMLDYG 783 (967)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 783 (967)
+..... ..+......-+ +..-.|+++++.+.|+++++. +...+. .....++.+....+.-+.|...+-+.....
T Consensus 1030 ~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls 1105 (1238)
T KOG1127|consen 1030 SWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS 1105 (1238)
T ss_pred hcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 432211 11111111111 124468899999999999886 222222 234455666677788888888887777653
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048794 784 CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP---DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTIS 860 (967)
Q Consensus 784 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 860 (967)
+++..+...+..++.-..+-.....+.+++.+. ... .-..-...-.+|.+.|+-....+.+++.+-.. +.++..
T Consensus 1106 -~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~-P~~~~~ 1182 (1238)
T KOG1127|consen 1106 -KVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSN-PGDPAL 1182 (1238)
T ss_pred -ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcC-CCChHH
Confidence 456666666655554444434444444444431 000 01112233456778899999999999988642 446666
Q ss_pred HHHH
Q 048794 861 YNFM 864 (967)
Q Consensus 861 ~~~l 864 (967)
|..|
T Consensus 1183 WslL 1186 (1238)
T KOG1127|consen 1183 WSLL 1186 (1238)
T ss_pred HHHH
Confidence 6654
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=5.2e-14 Score=130.96 Aligned_cols=248 Identities=13% Similarity=0.069 Sum_probs=212.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC
Q 048794 687 NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 687 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 766 (967)
..++.+|.+.|.+.+|.+.++..++. .|-..++..+..+|.+.+++..|+.++.+.+.. ++.+......++..+..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57888999999999999999999987 566778888899999999999999999998876 455555566788999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYF 846 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 846 (967)
++.++|.++|+.+++.. +.+......++..|.-.++++-|+.+|++++..|+ .+...|.+++-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999863 33555666677778888999999999999999874 46788999999999999999999999
Q ss_pred HHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 847 EELKLNGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 847 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
+++++.--.| ...+|.+|+.+.+..|++.-|.++|+-++.. -+.+.+.+++|+-.-.+.|+.++|..++..+-++.|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999653334 4567889999999999999999999999864 344569999999999999999999999999999999
Q ss_pred Ccccc-ccceeeeccCC
Q 048794 925 SEFVS-SELQVIYAENP 940 (967)
Q Consensus 925 ~~~~~-~~l~~~~~~~g 940 (967)
+-.+. .+|+.+....|
T Consensus 461 ~m~E~~~Nl~~~s~~~g 477 (478)
T KOG1129|consen 461 DMAEVTTNLQFMSVHYG 477 (478)
T ss_pred cccccccceeEEeeecC
Confidence 99998 68887766555
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=2.2e-09 Score=112.96 Aligned_cols=434 Identities=14% Similarity=0.092 Sum_probs=243.8
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChh-hHHH
Q 048794 329 VPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVI-VMNT 407 (967)
Q Consensus 329 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 407 (967)
.-+...|..+.-++...|+++.+.+.|++..... .-....|..+..+|...|.-..|..+++........|+.. .+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3355666667777777777777777777766432 2234566667777777777777777777665543223322 2222
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCc
Q 048794 408 LIDTLY-KADRVDEAWEMFCRMKDM--KL--APTVVTYNTLLSGLGKE-----------GQVQKAIELFEGMTDHGCFPN 471 (967)
Q Consensus 408 l~~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 471 (967)
....|. +.+..++++++..++.+. +. ......+..+.-+|... ....++++.+++..+.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 223332 345566666666555441 10 11233444444444311 11345556666666553 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHH
Q 048794 472 TVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGV 551 (967)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 551 (967)
+.....+.--|...++.+.|....++.++.+...+...|..+.-.+...+++.+|+.+.+......+.|.......+..-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333444445666777777777777777654556677777777777777777777777776665555555444444444
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHH
Q 048794 552 VKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAA 631 (967)
Q Consensus 552 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 631 (967)
..-++.++|+......+..+......+ ..++-...
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q---------------------------------------------~~~~~g~~ 592 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQ---------------------------------------------QTLDEGKL 592 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHh---------------------------------------------hhhhhhhh
Confidence 445666666665554433221000000 00000000
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC---ChHHHHHHHHH
Q 048794 632 KDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG---RVEELLKLYEE 708 (967)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 708 (967)
......+ .....+..+|.. +...+.......+ ..+.. +..
T Consensus 593 ~~lk~~l-------------------~la~~q~~~a~s---------------~sr~ls~l~a~~~~~~~se~~---Lp~ 635 (799)
T KOG4162|consen 593 LRLKAGL-------------------HLALSQPTDAIS---------------TSRYLSSLVASQLKSAGSELK---LPS 635 (799)
T ss_pred hhhhccc-------------------ccCcccccccch---------------hhHHHHHHHHhhhhhcccccc---cCc
Confidence 0000000 000001111111 1111111111000 00000 000
Q ss_pred HHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 709 MSFRGCKPN------TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 709 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
.... ..|+ ...|......+...+..++|...+.++.... +.....|...+..+...|.+++|.+.|..+...
T Consensus 636 s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0000 0111 1234455666777777788877777666652 445567888888899999999999999999875
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHH--HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 783 GCKP-NCVIYNILINGFGKTGDVETACE--LFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 783 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.| +..+...++.++.+.|+..-|.. ++..+++ +.|+ ...|+.++.++.+.|+.++|.+.|+.+.+.
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 44 45588889999999888777777 8999988 5676 689999999999999999999999998863
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.60 E-value=1.1e-08 Score=106.28 Aligned_cols=524 Identities=16% Similarity=0.118 Sum_probs=256.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 048794 128 CIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGN 207 (967)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 207 (967)
.|..|.+.|.+-.|...--.-.. ...+......+..++++..-+++|-++|+++... ...+..|.+-.-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgda 689 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccH
Confidence 44555566655555443321111 1234444555555555555566666666655421 112222222222
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 048794 208 IEVVKEFWSQMVADGYAADVVTY-TIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFN 286 (967)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 286 (967)
+.+|.++-+-. ++..+... ......+...|+++.|..-|-+... ....+.+......|.+|+.+++
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHH
Confidence 33333332221 11111111 1222334445555555544433221 1223445556677888888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048794 287 NMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPD 366 (967)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 366 (967)
.+..... -..-|..+...|+..|+++.|.++|.+. ..++..+..|.+.|+|++|.++-.+... ....
T Consensus 757 niqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t 823 (1636)
T KOG3616|consen 757 NIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEAT 823 (1636)
T ss_pred Hhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhH
Confidence 7765432 2234566777788888888888777543 2345667778888888888777655432 1233
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048794 367 SVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSG 446 (967)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 446 (967)
...|..-.+-.-..|.+.+|.+++-.+- .|+ ..|.+|-+.|..+..+++..+-.... -..+...+..-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e 891 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKE 891 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHH
Confidence 3445444444556667777766654432 232 23455666666666666655432211 12233334444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC------------CCCC--------
Q 048794 447 LGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN------------CWPD-------- 506 (967)
Q Consensus 447 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~-------- 506 (967)
+-..|+...|..-|-+.-+ |...+.+|..++-+++|-++-+.--..+ +-.+
T Consensus 892 ~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk 962 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 4455555555543322211 2223333333344443333221110000 0000
Q ss_pred HHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhh
Q 048794 507 VLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGG 586 (967)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (967)
......-+...+..+.++-|..+-+-..+ ..-+.++..++..+...|++++|-+.|-.++..+.-. ..|...+..
T Consensus 963 ~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn---itwcqavps 1037 (1636)
T KOG3616|consen 963 HGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN---ITWCQAVPS 1037 (1636)
T ss_pred hhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc---chhhhcccc
Confidence 00111223334445555656555444333 2233456667777778889999888887777654322 123332221
Q ss_pred hcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 048794 587 ILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEM 666 (967)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 666 (967)
. +-...++.|..+. ..+.++...+++..|..+-+.. ....-+.++...++.-...|++.+
T Consensus 1038 r-----------fd~e~ir~gnkpe-----~av~mfi~dndwa~aervae~h----~~~~l~dv~tgqar~aiee~d~~k 1097 (1636)
T KOG3616|consen 1038 R-----------FDAEFIRAGNKPE-----EAVEMFIHDNDWAAAERVAEAH----CEDLLADVLTGQARGAIEEGDFLK 1097 (1636)
T ss_pred h-----------hhHHHHHcCCChH-----HHHHHhhhcccHHHHHHHHHhh----ChhhhHHHHhhhhhccccccchhh
Confidence 1 1111122221111 2345677888888887765332 222334566666677777888888
Q ss_pred HHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHH----------------hCCCCCChhhHHHHHHHHHh
Q 048794 667 GLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMS----------------FRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 667 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~ 730 (967)
|+.++-+.. +|+. .++.+...+-|.+|+.+.+..+ +.| .-....+..-..-..+
T Consensus 1098 ae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq 1167 (1636)
T KOG3616|consen 1098 AEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQ 1167 (1636)
T ss_pred hhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHh
Confidence 877665444 3554 2344556666666666544321 111 1122233344444556
Q ss_pred cCCHHHHHHHHHHH
Q 048794 731 SNSIDKAMDLFYNL 744 (967)
Q Consensus 731 ~~~~~~A~~~~~~~ 744 (967)
+|++..|.+.+-++
T Consensus 1168 ~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1168 AGDWRKAVDALLKI 1181 (1636)
T ss_pred cccHHHHHHHHhhh
Confidence 77777777766554
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=4.3e-11 Score=113.09 Aligned_cols=461 Identities=13% Similarity=0.081 Sum_probs=239.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 048794 339 LYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRV 418 (967)
Q Consensus 339 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 418 (967)
+.-+....++..|+.+++.-...+-.....+-.-+..++.+.|++++|...+..+.+.. .++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34456677788888887766544322222233334556678899999999888887654 56667777777777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 048794 419 DEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEM 498 (967)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (967)
.+|..+..+..+ ++.--..++..-.+.|+-++-..+.+.+.+. ..--.+|.......-.+++|+.++.++
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888887665432 2333333444445667777776666655432 222334555554555688899999888
Q ss_pred ccCCCCCCHHHHHH-HHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcch
Q 048794 499 TPRNCWPDVLTYNT-IIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAER 577 (967)
Q Consensus 499 ~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 577 (967)
+..+ |+-...+. +.-+|.+..-++-+.+++.......|.++.+.+..+...++.=+...|....+........
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~---- 251 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ---- 251 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----
Confidence 8764 33333332 3445777788888888888888878887777776666655533322333322222111000
Q ss_pred hhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 048794 578 QFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHG 657 (967)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 657 (967)
.++.+..+ +-..
T Consensus 252 -------------------------------------------------~~~f~~~l-------------------~rHN 263 (557)
T KOG3785|consen 252 -------------------------------------------------EYPFIEYL-------------------CRHN 263 (557)
T ss_pred -------------------------------------------------cchhHHHH-------------------HHcC
Confidence 00000000 0011
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-----HHhcC
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG-----LVKSN 732 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~ 732 (967)
+.--.+-+.|++++-.+.+. -| .+-..|+-.|.+.++..+|..+.+.+.-. .|-...+..+..+ .....
T Consensus 264 LVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred eEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHH
Confidence 11222334444444444432 11 11223333455566666666655544211 1111111111111 11111
Q ss_pred CHHHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 733 SIDKAMDLFYNLVSGGFSPT-PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
..+.|...|.-+-+.+...+ .....+++..+.-..++++.+-+++.+... +..|...-.+++.+++..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 23334444443333332222 223444555555555666666666665553 2223333344666666777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048794 812 KQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRIEEALSLFDEMKKRGIS 890 (967)
Q Consensus 812 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 890 (967)
-++....++.+..-...|+++|.+.|+.+-|..++-++ +-+.+ ...+..++..|++.+++=-|.+.|..+.. ..
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lD 491 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LD 491 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cC
Confidence 66554322222333345566777777776666654332 21111 12233455666666766666666666653 45
Q ss_pred CCHHhH
Q 048794 891 PDLYTY 896 (967)
Q Consensus 891 ~~~~~~ 896 (967)
|+++.|
T Consensus 492 P~pEnW 497 (557)
T KOG3785|consen 492 PTPENW 497 (557)
T ss_pred CCcccc
Confidence 555444
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4.1e-11 Score=113.26 Aligned_cols=454 Identities=11% Similarity=0.010 Sum_probs=280.0
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 376 CYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQK 455 (967)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 455 (967)
-+....++..|+.+++.-...+-+-...+-..+..++.+.|++++|...+.-+.+.. .++...+..+..++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 345567888888888776544322223344456667788999999999988877643 4566666666666667788888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 456 AIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
|..+..+..+ ++.....++...-+.++-++-..+.+.+... ..--.++.......-.+++|+++|.++..
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876554432 3334444555556677777766665555332 22233455555555678888888888876
Q ss_pred hcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcch
Q 048794 536 WLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVV 615 (967)
Q Consensus 536 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (967)
..|.-...-..++-.|.+..-++-+.++++-.+.+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------------------------------------------- 214 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------------------------------------------- 214 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---------------------------------------------
Confidence 44433322333444555666665555555443322
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK 695 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (967)
.+.++.+.+..+..+.+.-+-.-|++-.+.+.+.+.. . |-.....+..
T Consensus 215 ----------------------------~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~~f~~~l~rH 262 (557)
T KOG3785|consen 215 ----------------------------FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---YPFIEYLCRH 262 (557)
T ss_pred ----------------------------CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---chhHHHHHHc
Confidence 3556666666666666555555555555555553211 1 1111111111
Q ss_pred ----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC----
Q 048794 696 ----SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG---- 767 (967)
Q Consensus 696 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 767 (967)
-.+-+.|+.++-.+.+. - +.+...++-.|.++++.++|..+....- |.++.-|..-+-.+...|
T Consensus 263 NLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcC
Confidence 13446677776666543 1 2344556667899999999998876532 223333333333333333
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 768 ---RLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 768 ---~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
...-|.+.|+-.-+.+...|+. -...++.++.-..++++.+-.++....- +..|.....+++.+++..|++.+|.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHH
Confidence 3445555555544443333433 3455666666666889999888887663 4445566678999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
++|-.+....++....-...|+.+|.+.|+.+-|..++-++ ..+.+. ..+.-+++.+++++.+==|.+.|..+=.+
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 99988765444434444457899999999999998877554 344444 44456678899999988888888876666
Q ss_pred CCCcccc
Q 048794 923 QPSEFVS 929 (967)
Q Consensus 923 ~p~~~~~ 929 (967)
+|+--.|
T Consensus 491 DP~pEnW 497 (557)
T KOG3785|consen 491 DPTPENW 497 (557)
T ss_pred CCCcccc
Confidence 6665544
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.4e-11 Score=115.25 Aligned_cols=293 Identities=14% Similarity=0.146 Sum_probs=195.7
Q ss_pred hhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchH
Q 048794 518 VKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSI 597 (967)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (967)
.-+++.++|...|-+|.+..|....+...|+..|.+.|..+.|+++-+..+....-..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~---------------------- 103 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF---------------------- 103 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch----------------------
Confidence 3456677777777777776666666777777777777777777766554443221110
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048794 598 LFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA 677 (967)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 677 (967)
.....+...|+.-|...|-+|.|+.+|..+.+.
T Consensus 104 -----------------------------------------------~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 104 -----------------------------------------------EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 011234556777788888888888888888875
Q ss_pred CCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 048794 678 GCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI----SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP 753 (967)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 753 (967)
+ ..-..+...|+.+|-...+|++|++.-+++.+.+..+... .+-.+...+....+.+.|+..+.++.+.+. ...
T Consensus 137 ~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cv 214 (389)
T COG2956 137 G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCV 214 (389)
T ss_pred h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cce
Confidence 4 3345567778888888888888888888888775444332 233444445556778888888888888743 333
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCL 833 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 833 (967)
.+-..+++.+...|+++.|++.++.+.+.++.--+.+...|..+|.+.|+.++.+..+.++.+. .++...-..+...-
T Consensus 215 RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~li 292 (389)
T COG2956 215 RASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLI 292 (389)
T ss_pred ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHH
Confidence 4555678888888999999999988888643222347778888888889999988888888884 44444445555544
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG---RSGRIEEALSLFDEMK 885 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~ 885 (967)
....=.+.|..++.+-+.. +|+...+..+++.-. ..|+..+....++.++
T Consensus 293 e~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 293 ELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 4444445555555554442 678777777776643 4445666677777776
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.53 E-value=1.6e-09 Score=111.58 Aligned_cols=459 Identities=15% Similarity=0.135 Sum_probs=246.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 380 VGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIEL 459 (967)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 459 (967)
.+++...+++.+.+.+. .+-...+....+-.+...|+-++|..........++. +.+.|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 34555555555555542 2222333333333444555555555555554443322 344455555445555555555555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhc--
Q 048794 460 FEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWL-- 537 (967)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 537 (967)
+......+ +.|..++..+.-.-...++++.....-...++.. +.....|..++-++.-.|++..|..+++...+..
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555542 2344455444444444455555544444444432 1122334444444444555555555555544322
Q ss_pred CCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHH
Q 048794 538 YPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVP 617 (967)
Q Consensus 538 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (967)
+++...+... .....
T Consensus 176 ~~s~~~~e~s-----------------------------------------------------------------e~~Ly 190 (700)
T KOG1156|consen 176 SPSKEDYEHS-----------------------------------------------------------------ELLLY 190 (700)
T ss_pred CCCHHHHHHH-----------------------------------------------------------------HHHHH
Confidence 1222111110 01112
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHH-HHHHcc
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLL-DGYGKS 696 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 696 (967)
......+.|..++|.+-+..... ........-..-+..+.+.+++++|..+|..++.. .||...|+... .++.+-
T Consensus 191 ~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKI 266 (700)
T ss_pred HHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHH
Confidence 23445566666666666654421 11122223334467788999999999999999987 46666655443 344333
Q ss_pred CChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHH
Q 048794 697 GRVEELL-KLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKA-MDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKK 774 (967)
Q Consensus 697 g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 774 (967)
.+.-+++ .+|....+. .|-......+--....-.++.+. -.++...++.|.++- +..+...|-.-...+--.+
T Consensus 267 ~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~ 341 (700)
T KOG1156|consen 267 KDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEK 341 (700)
T ss_pred hhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHH
Confidence 3333444 666666554 22222222222222222333333 345666666665553 3333333332221111111
Q ss_pred HHHHHHH----C--------C--CCCCHHHHHH--HHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 775 LFEEMLD----Y--------G--CKPNCVIYNI--LINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 775 ~~~~~~~----~--------~--~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
+...+.. . + -+|....|.. ++..+-..|+++.|+...+.++.+ .|+ +..|..-++++.+.|
T Consensus 342 Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G 419 (700)
T KOG1156|consen 342 LVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAG 419 (700)
T ss_pred HHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcC
Confidence 1111111 0 0 1455555544 566678999999999999999984 788 466777799999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C-H---HhHH--HHHHHHHhcCCH
Q 048794 838 RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP--D-L---YTYN--SLILNLGRAGMV 909 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~---~~~~--~l~~~~~~~g~~ 909 (967)
..++|..+++++.+.+ .+|...=+.-+.-..+.++.++|.++.....+.|... + . -+|. .-+.++.++|++
T Consensus 420 ~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~ 498 (700)
T KOG1156|consen 420 LLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKL 498 (700)
T ss_pred ChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHH
Confidence 9999999999999865 4444322245666789999999999999988765411 1 0 1233 225688888999
Q ss_pred HHHHHhhcCC
Q 048794 910 EEARKLAGGN 919 (967)
Q Consensus 910 ~~A~~~~~~~ 919 (967)
-+|.+-+..+
T Consensus 499 g~ALKkfh~i 508 (700)
T KOG1156|consen 499 GLALKKFHEI 508 (700)
T ss_pred HHHHHHHhhH
Confidence 8888766644
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.8e-12 Score=126.65 Aligned_cols=236 Identities=14% Similarity=0.058 Sum_probs=165.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChhcHHHHH
Q 048794 687 NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP------TPCTYGPLI 760 (967)
Q Consensus 687 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~l~ 760 (967)
-.+++...+..+++.|++-|..++... .+...++....+|...|.+.+........++.|... -...+..++
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 456666777777888888888877763 455556666777777777777666665555543211 112233455
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRV 839 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 839 (967)
.+|.+.++++.|+..|++.+.....|+ ...+....++++...+...- +.|.. .-...-+..+++.|++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 677778888999999988776433322 23344456667766666554 45653 3344558888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
.+|...|.+++..+ +.|...|++.+-+|.+.|.+..|++-.+...+. -|+....|..-+.++..+.+|++|.+.|+++
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 557788899999999999999999998888864 2333477777788888888999999999999
Q ss_pred CcCCCCcccc-ccceeeec
Q 048794 920 CFVQPSEFVS-SELQVIYA 937 (967)
Q Consensus 920 l~~~p~~~~~-~~l~~~~~ 937 (967)
++.+|++..+ ..+...+.
T Consensus 453 le~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HhcCchhHHHHHHHHHHHH
Confidence 9999998886 34444433
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.4e-10 Score=109.54 Aligned_cols=292 Identities=12% Similarity=0.001 Sum_probs=205.0
Q ss_pred HHhcCCHHHHHHHHHhhccC-CCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 482 LCKNEEVDLAMKMLYEMTPR-NCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
.+..++...|...+-.+... -++.+......++..+...|+.++|+-.|++.+-..|.....+-..+-.+.+.|.++.-
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhH
Confidence 34444444444443333222 24556777778888888888888888888887766665555544444444445554443
Q ss_pred HHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHH
Q 048794 561 FRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTE 640 (967)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 640 (967)
-.+..... .
T Consensus 286 ~~L~~~Lf-----------------------------------------------------------------------~ 294 (564)
T KOG1174|consen 286 SALMDYLF-----------------------------------------------------------------------A 294 (564)
T ss_pred HHHHHHHH-----------------------------------------------------------------------h
Confidence 33322211 1
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhh
Q 048794 641 NLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720 (967)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 720 (967)
.. .....-|..-+..+...+++..|+-+.++.++.+ +.+...+..-+..+...|+.++|+-.|+.+.... +.+..+
T Consensus 295 ~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~ 370 (564)
T KOG1174|consen 295 KV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEI 370 (564)
T ss_pred hh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHH
Confidence 10 0112223333455667888999999999888765 4477788888899999999999999999998774 567789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH-HHHHc-CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 048794 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI-DGLSK-SGRLEEAKKLFEEMLDYGCKPNCV-IYNILING 797 (967)
Q Consensus 721 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~ 797 (967)
|..++.+|...|.+.+|...-+..... ++.+..++..++ .++.- ----++|.+++++.+.. .|+.. ..+.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHH
Confidence 999999999999999999888877765 344444555443 33322 22357899999998875 56644 77888888
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
+...|..++++.++++.+. ..||....+.|+.++...+.+.+|.+.|..++..+
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8899999999999999888 58888889999999999999999999999998753
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=7.5e-10 Score=107.64 Aligned_cols=286 Identities=16% Similarity=0.126 Sum_probs=211.7
Q ss_pred hcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048794 64 QSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYR 143 (967)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (967)
..|+|..|+++..+..+.+-.| ...|...+.+....|+.+.+-.++.++.+..-.++..+.....+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3799999999999988876444 446666778888999999999999999877445677778888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHH
Q 048794 144 ILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQ-------VTYITLLDKFSDCGNIEVVKEFWS 216 (967)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 216 (967)
-.+++.+.+ +.+..+.....++|.+.|++.....++..+.+.+.-.+. .++..++.-....+..+.....|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998875 567788899999999999999999999999998865544 367777777777777777777787
Q ss_pred HHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 048794 217 QMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPT 296 (967)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 296 (967)
..... ...++..-..++.-+.++|+.++|.++..+..+.+..|+ . ...-.+.+.++.+.-++..++..+.- +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 76544 344566677778888889999999999988888766555 1 22234456677777777776655442 233
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 297 AYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLK 359 (967)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 359 (967)
+..+..+...|.+.+.+.+|...|+...+. .|+...|..+...+.+.|+..+|.++.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 356666666666666666666666655554 4555566666666666666666665555544
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.7e-12 Score=118.86 Aligned_cols=234 Identities=14% Similarity=0.077 Sum_probs=200.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
..++..|.+.|-+.+|.+.++..++. .|-+.++..|...|.+...+..|+.+|.+-+... +-|..........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56788899999999999999999887 5677788889999999999999999999998873 44555556667788889
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
++.++|.++|+.+++.. +.+.....+++..|.=.|+.+.|+.+|+++++.|.. +...|++++.++.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999873 445566667777788889999999999999999865 8889999999999999999999999
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 812 KQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 812 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
++++..-..|+ ..+|++++.+....|++.-|.+.|+-++..+ ....+.+++|+-.-.+.|+.++|..+++.+.. +
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--V 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--h
Confidence 99988645566 5789999999999999999999999999765 45678999999999999999999999999985 4
Q ss_pred CCCH
Q 048794 890 SPDL 893 (967)
Q Consensus 890 ~~~~ 893 (967)
.|+.
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 4543
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=2.5e-09 Score=110.21 Aligned_cols=426 Identities=14% Similarity=0.113 Sum_probs=271.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhh
Q 048794 440 YNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVK 519 (967)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (967)
|..++..| ..+++...+++.+.+... .+....+.....-.+...|+-++|.......+..++ .+...|..++-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 34444433 567777777777777763 344445554444456667888888888877776553 366677777777777
Q ss_pred cCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHH
Q 048794 520 EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILF 599 (967)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (967)
..++++|++.|..+.+..+.|...+..++-...+.++++.....-.+.+...++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-------------------------- 141 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-------------------------- 141 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--------------------------
Confidence 888888888888888888888888888888888888777766654444433211
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHH------HHHHHhcCChHHHHHHHHH
Q 048794 600 AEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYL------IHGLLEVHATEMGLDLFTT 673 (967)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~ 673 (967)
...-+...+..+.-.|++..|...++.+.+.....++...+... ...+.+.|..++|++.+..
T Consensus 142 -----------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 142 -----------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 11122334556667788888888888887666444444433322 3445678888888877765
Q ss_pred HHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHH-HHHHHHHhCCCCC
Q 048794 674 MKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVI-SGLVKSNSIDKAM-DLFYNLVSGGFSP 751 (967)
Q Consensus 674 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~-~~~~~~~~~~~~~ 751 (967)
....- -........-+..+.+.+++++|..+|..++.. .||...+.... .++....+.-+++ .+|....+. ++
T Consensus 211 ~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~- 285 (700)
T KOG1156|consen 211 NEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YP- 285 (700)
T ss_pred hhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Cc-
Confidence 54431 112333445677889999999999999999987 56665554444 4443444555555 556555543 22
Q ss_pred ChhcHHHHHHHHHcCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH----h--CC------
Q 048794 752 TPCTYGPLIDGLSKSGRLE-EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMI----K--GG------ 818 (967)
Q Consensus 752 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~--~~------ 818 (967)
.......+......-.++. ..-+++...++.|+++ ++..+...|-.-...+ ++++.+ . .|
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCc
Confidence 2211111211112212333 3345566667766542 3344444443322211 222221 1 01
Q ss_pred ------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 819 ------IRPDL--KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 819 ------~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
-+|.. .+++.++.-+-+.|+++.|+.+++.++.+ .|+ .+.|..-+.++.+.|.+++|...++++.+.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-- 434 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-- 434 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--
Confidence 14553 45567788888999999999999999985 565 456777789999999999999999999864
Q ss_pred CCCHHhHH-HHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 890 SPDLYTYN-SLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 890 ~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
..-....+ ..+.-..+.++.++|.+++.+..+
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 33333444 778888899999999999886654
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.1e-09 Score=107.49 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFK--------QMIKGGIRPDLKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 839 (967)
....|..++....+..+.....+....+.....+|+++.|++++. ...+.+..|. +...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 466777777777765433334566777777888899999998888 5555444444 333455556666665
Q ss_pred HHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048794 840 DDALHYFEELKLN--GLDADT----ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 840 ~~A~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
+-|..++.+++.. ...+.. ..+.-++..-.+.|+-++|.+.++++++. .+++..++..++.+|.+. +.+.|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 5555555555420 001111 22333444455779999999999999975 677778889999888888 778888
Q ss_pred HhhcCC
Q 048794 914 KLAGGN 919 (967)
Q Consensus 914 ~~~~~~ 919 (967)
.+-+++
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 887754
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=1.8e-11 Score=122.35 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=100.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..++..+...|++++|...+++++... +.+...+..++..+...|++++|++.++++.+.. +.+...+..++..+...
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 333444444444444444444444331 2223344445555555555555555555555542 22334555555555556
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++++|+..+++++.....|. ...+..++.++...|++++|...+++++... +.+...+..++.++...|++++|...
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666554211121 3345555666666666666666666665532 22344555566666666666666666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 881 FDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
++++.+. .+++...+..++..+...|+.++|..+.+.+..
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6665543 233344455555555566666666665554433
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.4e-09 Score=107.25 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=128.7
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--H
Q 048794 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCY--S 378 (967)
Q Consensus 301 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 378 (967)
..=+..+...|++++|.....++...+ +-+...+.+-+.++++.+.+++|+.+.+.-... ..+...+ +=.+| .
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Y 90 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEY 90 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHH
Confidence 344556677888888888888888765 335566777777888888888888555442211 1111111 23344 4
Q ss_pred HcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHH
Q 048794 379 KVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVT--YNTLLSGLGKEGQVQKA 456 (967)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a 456 (967)
+.+..++|...++... +.+..+...-...+.+.|++++|.++|+.+.+.+.. +... -..++.+ +-...+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~----~a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAV----AAALQV 161 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH----HHhhhH
Confidence 7788888888887322 223335666677788888888888888888765432 2211 1111111 111111
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhc--------cCCCCCCHH-------HHHHHHHHHhhcC
Q 048794 457 IELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMT--------PRNCWPDVL-------TYNTIIYGLVKEQ 521 (967)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~-------~~~~l~~~~~~~g 521 (967)
. +.+..... ...+...+......+...|++..|++++.... ..+ ..+.. +.-.+...+...|
T Consensus 162 ~-~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d-~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 Q-LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED-TNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred H-HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 11111110 01122222333445667788888888888772 111 11111 1223444566778
Q ss_pred cHhHHHHHHHHHHhhcCCChhHHH
Q 048794 522 RVKDAIWFFHQMRKWLYPDHITLC 545 (967)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~~~ 545 (967)
+.++|..+|..+.+..++|.....
T Consensus 239 qt~ea~~iy~~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPADEPSLA 262 (652)
T ss_pred chHHHHHHHHHHHHhcCCCchHHH
Confidence 888888888888877777765543
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.7e-08 Score=106.41 Aligned_cols=259 Identities=17% Similarity=0.177 Sum_probs=158.5
Q ss_pred cHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CC
Q 048794 121 NVYTFTICIR--ILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASS---------HQ 189 (967)
Q Consensus 121 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~ 189 (967)
|..+--.++. .|..-|++|.|.+-.+-+. +..+|..+.+.|.+.++.+-|.-.+-.|.... ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4444444443 4667899999998888776 44789999999999888887766665554210 11
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 190 PDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLI 269 (967)
Q Consensus 190 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 269 (967)
|+ .+-....-.....|.+++|..++.+..+ |..+-..|-..|.+++|+++-+.-..-.+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 21 1111122223456778888888877654 34455667778888888887765433222 23455555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 048794 270 CGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIG 349 (967)
Q Consensus 270 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 349 (967)
.-+-..++.+.|++.|++.... --..+..|. .++.......+++ .+...|.....-+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence 5556677888888888764321 111111111 1222222222222 24455555555566778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 350 EAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMK 429 (967)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 429 (967)
.|+.++..... |.++++..|-.|+.++|-++-++- -|...-..+.+.|-..|++.+|...|-++.
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888877653 456666677778888887776542 355556667888888888888888877654
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=3.4e-11 Score=126.38 Aligned_cols=236 Identities=23% Similarity=0.251 Sum_probs=163.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CC
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFR-----G-CKPNTI-SHNIVISGLVKSNSIDKAMDLFYNLVSG-----G--FS 750 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~ 750 (967)
+...++..|...|++++|..++++++.. | ..|... ..+.++..|...+++++|..+|+++++. | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666777777777777777666543 1 012222 2334666777778888888877777654 1 12
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhC---CCC
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY-----GC-KPNCV-IYNILINGFGKTGDVETACELFKQMIKG---GIR 820 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~ 820 (967)
.-..++..|+.+|.+.|++++|...++++.+. +. .|... .++.++..+..++++++|..++.+.++- -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 22356778888888888888888888877542 11 12222 4666777788889999999999887651 011
Q ss_pred C---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 048794 821 P---D-LKSYSVLVDCLCMVGRVDDALHYFEELKLN-----G--LDADTISYNFMINGLGRSGRIEEALSLFDEMK---- 885 (967)
Q Consensus 821 p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 885 (967)
+ + ..++..|+..|.++|++++|.+++++++.. + .......++.++..|.+.+++++|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2 357889999999999999999999998741 1 11134567889999999999999988888765
Q ss_pred HcCC-CCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 886 KRGI-SPDL-YTYNSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 886 ~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
..|. .|+. ..|.+|+.+|.++|++++|+++.++++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2221 2233 677899999999999999999998877
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=5.9e-11 Score=132.30 Aligned_cols=180 Identities=11% Similarity=0.008 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 664 TEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYN 743 (967)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 743 (967)
+++|...++++++.+ +.+..++..++.++...|++++|+..|++++..+ +.+...+..++.++...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444432 1234444445555555555555555555555543 22334444555555555555555555555
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-
Q 048794 744 LVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD- 822 (967)
Q Consensus 744 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~- 822 (967)
++..++. +...+..++..+...|++++|+..++++.+...+.+...+..++.++...|++++|.+.++++... .|+
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~ 474 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITG 474 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchh
Confidence 5554322 111222223334445555666666655554321112334555555555566666666666555442 333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
......++..|...| ++|...++++.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 233344444445444 24444444443
No 81
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.6e-09 Score=105.41 Aligned_cols=288 Identities=13% Similarity=0.092 Sum_probs=234.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 048794 29 LKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMN 108 (967)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (967)
.-|++.+|+....+.-+-+.. ....|..-..+.-+.|+.+.+-.++.++.+....++.....+....+...|+++.|+.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 468999999999997777655 3345666677778889999999999999987556777778888888999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHH
Q 048794 109 LLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDV-------VTYTVLIDALCTAGRLDQAKEIFL 181 (967)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 181 (967)
-+.++...+ +.+..+.....++|.+.|++.+...++.++.+.+.-.+. .+|..+++-....+..+.-.+.|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999877 567888899999999999999999999999998765444 367777777777777777777888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048794 182 KMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPN 261 (967)
Q Consensus 182 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 261 (967)
..... ...++..-..++.-+..+|+.++|.++..+.++.+..++ ...+ -...+.++.+.-.+..+...+... .+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~-~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHP-ED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCC-CC
Confidence 77543 455666777888889999999999999999998876655 2222 234577888888888887766543 36
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 048794 262 LHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR 326 (967)
Q Consensus 262 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 326 (967)
+..+.+|...|.+.+.|.+|...|+...+. .|+..++..+..++.+.|++..|.+..++....
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 688999999999999999999999976654 799999999999999999999999998886543
No 82
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=6.2e-11 Score=132.13 Aligned_cols=249 Identities=16% Similarity=0.006 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH---------ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 048794 663 ATEMGLDLFTTMKNAGCAPDISTYNLLLDGYG---------KSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS 733 (967)
Q Consensus 663 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 733 (967)
++++|+..|++.++..+ .+...+..++.++. ..+++++|...++++...+ +.+..++..++.++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 35667777777776532 13344545544433 2234667777777777664 3355566666666777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQ 813 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 813 (967)
+++|...|++++..+ +.+...+..++.++...|++++|+..++++.+..+. +...+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777777653 334445666677777777777777777777765322 222333334444556677777777777
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 814 MIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 814 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
++... .|+ ...+..++.++...|++++|...+.++... .| .......++..|...| ++|...++.+.+. ..-
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~-~~~ 505 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLES-EQR 505 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH-hhH
Confidence 66531 343 344566677777777777777777665542 23 2334445555566666 3666666665532 111
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 892 DLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
.......+..++.-.|+-+.|.-+ +++.+-
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 111112244455555665555555 544433
No 83
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=1.8e-10 Score=115.07 Aligned_cols=199 Identities=16% Similarity=0.107 Sum_probs=137.8
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH
Q 048794 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDG 762 (967)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 762 (967)
...+..++..+...|++++|+..++++.... +.+...+..++..+...|++++|.+.+++++... +.+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666677777777777777766553 3344556666667777777777777777776653 3334456667777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 840 (967)
+...|++++|+..++++.+.... .....+..++.++...|++++|...++++++. .|+ ...+..++.++...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 77778888888888777764211 23346667777788888888888888888774 444 567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+|..++++++... +.++..+..++.++...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888887652 44566666777788888888888887776653
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.4e-09 Score=108.18 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=84.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 375 KCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQ 454 (967)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 454 (967)
.+.+..|+++.|...|...+... +++...|+.-..+|...|++++|++--.+-++.++. -...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 45567899999999999988876 457888888888999999999998877777766533 5778888888888899999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 048794 455 KAIELFEGMTDHGCFPNTVTFNTLLHCL 482 (967)
Q Consensus 455 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (967)
+|+..|.+-++.. +.+...+..+..++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999999888763 44666677777766
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=1e-10 Score=104.59 Aligned_cols=203 Identities=13% Similarity=0.020 Sum_probs=120.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..++..|...|++..|..-++++++.+ +....++..++..|.+.|+.+.|.+.|++++... +.+..+.|+.+..+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 344555666666666666666666642 3334456666666666666666666666666643 22445666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++++|...|++++..-.-|. ..+|.+++.|-.+.|+++.|..+|++.++.+ +..+.+...++......|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 666666666666665211112 3566666666666666666666666666643 22344455566666666666666666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 881 FDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
++..... ..+..+.+.-.+..-.+.|+...|.++=.++-+..|..+.
T Consensus 196 ~~~~~~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 6666543 3355555555555566666666666665555555555554
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=1.1e-10 Score=122.63 Aligned_cols=238 Identities=22% Similarity=0.185 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCHhh-HHHHHHHHHccCChHHHHHHHHHHHhCC---C-CC
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNA-----GC-APDIST-YNLLLDGYGKSGRVEELLKLYEEMSFRG---C-KP 716 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~ 716 (967)
..+...++..|...|+++.|+..++..++. |. .|.... ...++..|...+++++|+.+|++++..- . +.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 334444666666666777666666655543 11 223333 3347778889999999999999887641 0 22
Q ss_pred C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHC---C
Q 048794 717 N---TISHNIVISGLVKSNSIDKAMDLFYNLVSG-----G-FSPT-PCTYGPLIDGLSKSGRLEEAKKLFEEMLDY---G 783 (967)
Q Consensus 717 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 783 (967)
+ ..++..+..+|...|++++|..++++++.. + .++. ...+..++..+...+++++|..++++..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 235677777899999999998888877654 1 1222 245677888899999999999999987652 1
Q ss_pred CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 048794 784 CKPNC----VIYNILINGFGKTGDVETACELFKQMIKG------GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL- 851 (967)
Q Consensus 784 ~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 851 (967)
+.++. .++++|+..|..+|++++|.++|++++.. +..+. ...++.|+..|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22222 38999999999999999999999998762 12333 46778999999999999999999987653
Q ss_pred ---CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 852 ---NG--LDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 852 ---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.| .+....+|.+|+.+|...|++++|+++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 12234578899999999999999999999887
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=7.3e-11 Score=119.87 Aligned_cols=119 Identities=13% Similarity=-0.039 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHcCC-Cc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048794 662 HATEMGLDLFTTMKNAGC-AP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAM 738 (967)
Q Consensus 662 ~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 738 (967)
+..+.++..+.+++.... .| ....|..++..+...|++++|+..|+++++.. +.+...+..++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555554321 11 12345555555566666666666666655543 223445555555555555555555
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 739 DLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
..|+++++.. +....++..++.++...|++++|++.++++.+.
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555555542 222334455555555555555555555555553
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.36 E-value=7.3e-09 Score=97.98 Aligned_cols=232 Identities=12% Similarity=0.067 Sum_probs=156.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTST-------------LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS 684 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 684 (967)
.+..+.++|.++.|..-|+.++........ .......+..+.-.|+...|+.+...+++.. +.+..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 334555555555555555555443322111 0112223344556788888999998888764 35777
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-h-cHHH----
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP-C-TYGP---- 758 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-~~~~---- 758 (967)
.+..-..+|...|++..|+.-++.+.+.. ..+...+..+-..+...|+.+.++...+++++.+++... . .|-.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH
Confidence 77778888999999999998888887653 345567778888888999999999999988886322211 0 1111
Q ss_pred -----HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048794 759 -----LIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV---IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL 829 (967)
Q Consensus 759 -----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 829 (967)
-+......++|.+++...+...+..+..... .+..+-.++...+++.+|++...++++ ..|+ ..++.--
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dR 347 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHH
Confidence 1223445677888888888888753321222 344566677788889999999998888 5676 6788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
+.+|.-...||.|+.-|+++.+.+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888888999999999888754
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=7.1e-10 Score=112.68 Aligned_cols=224 Identities=15% Similarity=-0.006 Sum_probs=134.8
Q ss_pred CChHHHHHHHHHHHhCCC-C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGC-K--PNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAK 773 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 773 (967)
+..+.++.-+.+++.... . .....+...+..|...|+.++|...|+++++.. +.+...|..++..+...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666666666664321 1 113456667777777788888888887777763 345567777777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
..|+++++..+ .+..+|..++.++...|++++|++.+++.++ ..|+..........+...+++++|...+.+.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 88888777531 2445777777777777888888888888777 35553321112223345567778887776655321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCC-CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 854 LDADTISYNFMINGLGRSGRIEEALSLFDEMKKR---G--ISP-DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 854 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
+|+... .+......|+..++ ..++.+.+. . +.| ...+|..++..+...|++++|+.+|+++++.+|.++
T Consensus 196 -~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 -DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 222211 22233334544333 233333311 0 111 235677778888888888888888888888877555
Q ss_pred cc
Q 048794 928 VS 929 (967)
Q Consensus 928 ~~ 929 (967)
.-
T Consensus 271 ~e 272 (296)
T PRK11189 271 VE 272 (296)
T ss_pred HH
Confidence 53
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.32 E-value=1.5e-09 Score=102.47 Aligned_cols=255 Identities=14% Similarity=0.067 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG 727 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 727 (967)
..+...-+.++.+.|.+++|..-|+.+++.. |+...- ..++.+.--.++-. .....+..
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s 164 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKS 164 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHH
Confidence 3344445667788888888888888888764 321110 00111110111111 11111222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETA 807 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 807 (967)
+...|+...|+.....+++.. +=+...+...+.+|...|+...|+.-++.+.+.. ..++.....+...+..-|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 334455555555555555542 2233344455555555555555555555554432 12334444555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHH----HHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 048794 808 CELFKQMIKGGIRPDLKSY----SVL---------VDCLCMVGRVDDALHYFEELKLNGLDADTI---SYNFMINGLGRS 871 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~----~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 871 (967)
+...++.++ +.|+.... -.| +....+.++|.++++-.+++++......+. .+..+-.++...
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 555555555 34543211 011 112234455555555555555432111111 222334445555
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 872 GRIEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 872 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
|++.+|++...++++ +.|+ ..++..-+.+|.-...|++|+.-|+++.+.+|+|..+
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 666666666666664 3444 3556666666666666666666666666666666553
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=1.9e-09 Score=96.68 Aligned_cols=201 Identities=20% Similarity=0.117 Sum_probs=143.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 686 YNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 686 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
...|+..|.+.|++..|.+-++++++.+ +.+..++..+...|...|+.+.|.+.|+++++.. +.+..+.+..+..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445666777777777777777777764 4455677777777777777777888887777763 4445577777788888
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 843 (967)
.|++++|...|+++......+ -..+|.+++.+-.+.|+.+.|...|++.++ ..|+ ..+...++......|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHH
Confidence 888888888888887642112 234788888887888888888888888887 3565 467777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
.+++.....+ .++...+...+.+--+.|+-+.|-++=.++.+ ..|.+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s 240 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYS 240 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCc
Confidence 8888777654 46777666667777778887777766666654 34444
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=2.2e-09 Score=114.75 Aligned_cols=294 Identities=18% Similarity=0.186 Sum_probs=207.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhh-HHHHHHHHH-
Q 048794 617 PIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIST-YNLLLDGYG- 694 (967)
Q Consensus 617 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~- 694 (967)
-....+...|++++|.+.+.+... .+.+........+..+.+.|+.++|...|..+++.+ |+... |..+..+..
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 345677889999999999977533 345556677788999999999999999999999985 55444 444444442
Q ss_pred ----ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCH
Q 048794 695 ----KSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSID-KAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRL 769 (967)
Q Consensus 695 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 769 (967)
.....+....+|+++.... |...+...+.-.+.....+. .+..++...+..|+|+ ++..+-..|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 1235678889999888764 33333222222222223343 3445667777777554 566666667766555
Q ss_pred HHHHHHHHHHHHC--------------CCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 048794 770 EEAKKLFEEMLDY--------------GCKPNCV--IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDC 832 (967)
Q Consensus 770 ~~A~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 832 (967)
.-...++...... .-+|+.. ++.-++..|...|++++|+++.++++++ .|. +..|...+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 5555666655421 0124443 4466688888999999999999999995 787 6788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------hH--HHHHHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLY------TY--NSLILNLG 904 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~ 904 (967)
+.+.|++++|.+.++.+.+.+ ..|...=+..+..+.+.|++++|.+.+....+.+..|-.. +| ...+.++.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 2344444456677889999999999999988655433321 33 35688999
Q ss_pred hcCCHHHHHHhhcCCCcC
Q 048794 905 RAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~ 922 (967)
+.|++..|.+.+..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 999999999998866643
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=1.3e-07 Score=101.25 Aligned_cols=291 Identities=15% Similarity=0.139 Sum_probs=146.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----c
Q 048794 96 AAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCT-----A 170 (967)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~ 170 (967)
.+...|++++|++.++.-... +.+........+..+.+.|+.++|..+|+.+.+++ |.+...|..+..+..- .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 345556666666666554332 33444455555666666666666666666666654 2233333333333311 1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 048794 171 GRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNI-EVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSI 249 (967)
Q Consensus 171 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 249 (967)
...+...++|+++...- |...+...+.-.+..-..+ ..+..++...+..|+| .++..+-..|....+..-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455555666554431 2222211111111111111 2334444455555533 2333444444433333333334
Q ss_pred HHHHHhC--------------CCCCCHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 048794 250 LDLMRGE--------------GILPNLH--TYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADP 313 (967)
Q Consensus 250 ~~~~~~~--------------~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (967)
+..+... .-+|+.. ++..+.+.+...|++++|+.+.+..+... +.....|..-++.+-..|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 4333211 0123332 23445566667777777777777776653 23355666667777777777
Q ss_pred hhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHcCChhH
Q 048794 314 GKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSV--------TYNMMMKCYSKVGQVDE 385 (967)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~ 385 (967)
.+|.+.++........ |...-+.....+.+.|+.++|..++......+..|... .......+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7777777776655321 33334455556677777777777777766554322211 12334566777777777
Q ss_pred HHHHHHHHHH
Q 048794 386 AVTLLSEMVE 395 (967)
Q Consensus 386 a~~~~~~~~~ 395 (967)
|++.+..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.1e-09 Score=109.56 Aligned_cols=258 Identities=13% Similarity=0.078 Sum_probs=182.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK 695 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (967)
...+..+.+.|+..+|.-+|+..+++ .|....+|..|+......++-..|+..+++.++.. +.+..++..|+-.|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhh
Confidence 34567788888888888888887765 36677889999999998888888998888888864 3367788888888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHH---HH-H--HHHHhcCCHHHHHHHHHHHHhC-CCCCChhcHHHHHHHHHcCCC
Q 048794 696 SGRVEELLKLYEEMSFRGCKPNTISHN---IV-I--SGLVKSNSIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l-~--~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 768 (967)
.|.-.+|++.++.-+...++.-..... .. . ........+....++|-.+... +...++.++..|+..|.-.|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 998899999888876543111000000 00 0 0011111223334455554444 334677788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
++.|++.|+.++... +.|...||.|+..++...+.++|+..|.++++ +.|+ +.+.++|+-.|...|.|+||..+|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998863 33667899999999888899999999999998 6888 6788899999999999999999988
Q ss_pred HHHHCCCC---C------CHHHHHHHHHHHHhcCCHHHHHH
Q 048794 848 ELKLNGLD---A------DTISYNFMINGLGRSGRIEEALS 879 (967)
Q Consensus 848 ~~~~~~~~---~------~~~~~~~l~~~~~~~g~~~~A~~ 879 (967)
.++....+ + +..+|..|-.++...++.|-+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 88742111 1 22456666556666666654443
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.6e-10 Score=116.06 Aligned_cols=230 Identities=16% Similarity=0.104 Sum_probs=108.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 768 (967)
.+..+.+.|+..+|.-+|+.+++.+ |.+..+|..|+.+....++-..|+..++++++.+ +.+..++..|+..|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 3444555666666666666666553 3344556666666666666566666666666542 3333455555555665555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH---------HHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCC
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILIN---------GFGKTGDVETACELFKQMIK-GGIRPDLKSYSVLVDCLCMVGR 838 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 838 (967)
-.+|++.+.+=+...+ . ..|..... .......+....++|-++.. .+..+|..+...|+-.|...|+
T Consensus 369 q~~Al~~L~~Wi~~~p--~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKP--K-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHHhCc--c-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 5555555555444211 1 01110000 00000112222233333222 2222334444445555555555
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhh
Q 048794 839 VDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLA 916 (967)
Q Consensus 839 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 916 (967)
+++|...|+.++.- +| +...|+.|+-+++...+.++|++.|.++++ +.|+. .+++.|+-.+...|-|+||.+++
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 55555555555542 23 334455555555555555555555555553 44444 44455555555555555555555
Q ss_pred cCCCcCCCCcc
Q 048794 917 GGNCFVQPSEF 927 (967)
Q Consensus 917 ~~~l~~~p~~~ 927 (967)
-.+|.+.+.+.
T Consensus 522 L~AL~mq~ks~ 532 (579)
T KOG1125|consen 522 LEALSMQRKSR 532 (579)
T ss_pred HHHHHhhhccc
Confidence 55555544433
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.3e-05 Score=85.34 Aligned_cols=336 Identities=16% Similarity=0.176 Sum_probs=172.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 048794 129 IRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNI 208 (967)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 208 (967)
.......|.+++|+.+|++.... ..|=..|-..|.|++|.++-+.--. +. -..||......+...+|.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccH
Confidence 33445667778888887776542 2233345567777777776554221 11 122444455555666777
Q ss_pred HHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 048794 209 EVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNM 288 (967)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 288 (967)
+.|.++|++.-.. -..++..|. .++.....+.+.+. +...|.....-+-..|+.+.|+.+|..+
T Consensus 875 ~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 875 EAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 7777777653211 111111111 11122222223322 3344555555555567777777766654
Q ss_pred HHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048794 289 EILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSV 368 (967)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 368 (967)
.. |-.+++..+-.|..++|-.+-++-. |...+..+...|-..|++.+|..+|.+.+.
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-------- 995 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA-------- 995 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------
Confidence 32 3344445555666666666554422 445556666667777777777776666542
Q ss_pred HHHHHHHHHHH-------------cC--ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH------
Q 048794 369 TYNMMMKCYSK-------------VG--QVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCR------ 427 (967)
Q Consensus 369 ~~~~l~~~~~~-------------~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------ 427 (967)
|...|+.|-. .+ +.-.|...|++.- .-+...+..|.+.|.+.+|+++--+
T Consensus 996 -fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 996 -FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred -HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 2222222111 11 2222223333221 0122233456666666666654221
Q ss_pred ---H-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC-
Q 048794 428 ---M-KDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN- 502 (967)
Q Consensus 428 ---~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 502 (967)
+ .+.....|+...+.-...++...++++|..++....+ |...+. +|...+..-..++-+.|....
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcC
Confidence 1 2233445777777777778888888888887766554 223333 333344444444445554331
Q ss_pred CCCCHH----HHHHHHHHHhhcCcHhHHHHHHHHHH
Q 048794 503 CWPDVL----TYNTIIYGLVKEQRVKDAIWFFHQMR 534 (967)
Q Consensus 503 ~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (967)
..|+.. +...++..+.++|.+..|.+-|.++-
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 233332 34455666778888888877776654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.9e-08 Score=93.32 Aligned_cols=192 Identities=13% Similarity=0.071 Sum_probs=121.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHh
Q 048794 371 NMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNT-LLSGLGK 449 (967)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 449 (967)
..++..+.+..+++.|++++..-.+.. +.+...++.+..+|....++..|-+.++++... .|...-|.. -...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444556666777777776666553 224555666777777777777777777776553 233333322 2334456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHH
Q 048794 450 EGQVQKAIELFEGMTDHGCFPNTV--TFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAI 527 (967)
Q Consensus 450 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 527 (967)
.+.+..|+.+...|.+. ++.. ....-.......+++..+..+++.....+ +..+....+....+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 67777777777777542 1111 11111112345677777777777766443 4445555566677788888888
Q ss_pred HHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhc
Q 048794 528 WFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQI 571 (967)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 571 (967)
+-|+...+....++..-+.++-++.+.+++..|+++....+.+.
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 88888887777777777778888888888888888877777653
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=1e-07 Score=101.70 Aligned_cols=307 Identities=15% Similarity=0.034 Sum_probs=190.9
Q ss_pred cchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 048794 613 SVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTST-LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLD 691 (967)
Q Consensus 613 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 691 (967)
..+..++..+...++.+.+...+.+.........+ .......+..+...|++++|.+.+++.++..+ .+...+.. +.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hH
Confidence 33455667777778888877777776555443333 23333445566788999999999999887642 23333332 22
Q ss_pred HHHc----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 048794 692 GYGK----SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG 767 (967)
Q Consensus 692 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 767 (967)
.+.. .+..+.+...+...... .+........+...+...|++++|...+++++... +.+...+..++.++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2322 34555555555442111 12223344566678889999999999999999874 444567788899999999
Q ss_pred CHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHH-H--HHHHHHHhcCCHH
Q 048794 768 RLEEAKKLFEEMLDYGCK-PNC--VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSY-S--VLVDCLCMVGRVD 840 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~-~--~l~~~~~~~g~~~ 840 (967)
++++|+..+++..+.... ++. ..|..++.++...|++++|+..|+++......+. .... . .+...+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999998875321 232 3466788889999999999999999875321112 2111 1 3334444455433
Q ss_pred HHHHH--H-HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------C-CHHhHHHHHHHHHhcCC
Q 048794 841 DALHY--F-EELKLN-GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGIS-------P-DLYTYNSLILNLGRAGM 908 (967)
Q Consensus 841 ~A~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~-~~~~~~~l~~~~~~~g~ 908 (967)
.+.++ + ...... ............+.++...|+.++|...++.+...... . ...+....+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 1 111111 00111122235667788999999999999888642111 0 12334456677888999
Q ss_pred HHHHHHhhcCCCcCC
Q 048794 909 VEEARKLAGGNCFVQ 923 (967)
Q Consensus 909 ~~~A~~~~~~~l~~~ 923 (967)
+++|...+..++.+-
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887543
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.7e-07 Score=87.12 Aligned_cols=203 Identities=11% Similarity=0.035 Sum_probs=152.0
Q ss_pred cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHH
Q 048794 12 IINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYS 91 (967)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 91 (967)
|+...-..+++.+..+.+..++++|.+++..-.++.++ +..-...+..+|....++..|-.+|+++... .|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 34444556888999999999999999999999988765 7777788888999999999999999999774 35444333
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 92 -ALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTIC--IRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 92 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
.-...+.+.+.+.+|..+...|.+. ++...-..- ....-..+++-.+..+.++.... .+..+.+.......
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheee
Confidence 3346677888999999999888653 222222222 22234568888999999888754 36666777777788
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 048794 169 TAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYA 224 (967)
Q Consensus 169 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 224 (967)
+.|+++.|.+-|+...+.+.-.....|+..+..| +.|+++.|.+...+++.+|+.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 9999999999999988766555556776665444 668999999999999988754
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=5.9e-07 Score=95.85 Aligned_cols=259 Identities=12% Similarity=0.022 Sum_probs=156.8
Q ss_pred HHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHc
Q 048794 621 LFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE----VHATEMGLDLFTTMKNAGCAPD-ISTYNLLLDGYGK 695 (967)
Q Consensus 621 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 695 (967)
.+...|++++|...+++++... |.+...+.. ...+.. .+....+.+.+.... ...|+ ......++..+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHH
Confidence 3444556666666666554432 333333332 222222 344444444444311 11233 3445566778899
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh--hcHHHHHHHHHcCCCHHHH
Q 048794 696 SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS-PTP--CTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A 772 (967)
.|++++|...++++.... +.+...+..+..++...|++++|...+++.+..... +.. ..+..++..+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999875 445667788888999999999999999998876322 222 2455788999999999999
Q ss_pred HHHHHHHHHCCCCCCHH-HH-H--HHHHHHhccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 048794 773 KKLFEEMLDYGCKPNCV-IY-N--ILINGFGKTGDVETACELFKQMIKG--GIRPD---LKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~-~~-~--~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~ 843 (967)
+.+|+++......+... .. + .+...+...|....+.+ |+.+... ...|. .......+.++...|+.++|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 99999987542211222 11 1 22233334443222222 2222110 00111 122235677888899999999
Q ss_pred HHHHHHHHCCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 844 HYFEELKLNGLD-----A---DTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 844 ~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..++.+...... . ........+.++...|++++|.+.+..++.
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999987642111 0 223344456678899999999999999874
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.06 E-value=1.2e-09 Score=96.90 Aligned_cols=116 Identities=10% Similarity=-0.042 Sum_probs=80.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 808 CELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
..++++.++ ..|+. +..++.++...|++++|...|+.++..+ +.+...+..++.++...|++++|+..|+++++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355666666 35553 4456777777777777777777777643 335666777777777777777777777777753
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 888 GISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 888 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.|.+...+..++.++...|++++|+..++++++++|+++.+
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 34445777777777777777777777777777777777765
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=1.1e-09 Score=108.96 Aligned_cols=259 Identities=17% Similarity=0.123 Sum_probs=140.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI 734 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 734 (967)
++.+.-.|++..++.-.. ........+......+.+++...|+++.++. ++.... +|....+..+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556777777775555 2222222233445556667777777665543 222222 44444444444433333444
Q ss_pred HHHHHHHHHHHhCCCC-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048794 735 DKAMDLFYNLVSGGFS-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQ 813 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 813 (967)
+.++..++..+..... .+.......+.++...|++++|++++.+. .+.......+.+|...++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455544444333222 12222333345566677777777766543 2444555556667777777777777777
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048794 814 MIKGGIRPDL-KSYSVLVDCLCMVG--RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGIS 890 (967)
Q Consensus 814 ~~~~~~~p~~-~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 890 (967)
|.+ ...|. .+-..-+++....| ++.+|..+|+++.+. +.+++..++.++.++...|++++|.+.+++++.. -+
T Consensus 157 ~~~--~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~~ 232 (290)
T PF04733_consen 157 MQQ--IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-DP 232 (290)
T ss_dssp HHC--CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HHh--cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-cc
Confidence 766 33342 22222233333333 477777777776543 4566677777777777777777777777777643 23
Q ss_pred CCHHhHHHHHHHHHhcCCH-HHHHHhhcCCCcCCCCccc
Q 048794 891 PDLYTYNSLILNLGRAGMV-EEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 891 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~ 928 (967)
.+++++.+++.+....|+. +.+.+++.++-..+|++|.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 3446666676666666665 5666677777677777776
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=7.3e-09 Score=103.14 Aligned_cols=252 Identities=15% Similarity=0.118 Sum_probs=150.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (967)
++-++-.|++..+..-.. . .....+........+.+.+...|+++.++. ++.+ +..|...+...+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~-~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKK-SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-T-TSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hhcc-CCChhHHHHHHHHHHHhCccc
Confidence 455667788887776555 2 222222234455566777778887776543 2222 225666666656555544455
Q ss_pred hHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 699 VEELLKLYEEMSFRGCKP-NTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
.+.++.-+++.......+ +..........+...|++++|++.+.+. .+.......+.+|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554433222 2222233334555678888888776542 334455666778888888888888888
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048794 778 EMLDYGCKPNCV-IYNILINGFG--KTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGL 854 (967)
Q Consensus 778 ~~~~~~~~~~~~-~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 854 (967)
.+.+. ..|.. +....++... ...++++|.-+|+++.+. ..++..+.+.++.++...|++++|...+++++..+
T Consensus 156 ~~~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 156 NMQQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHHCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHHhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 88775 33433 2222222222 233688888888887664 45667778888888888888888888888887654
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048794 855 DADTISYNFMINGLGRSGRI-EEALSLFDEMKK 886 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 886 (967)
+.++.++.+++-+....|+. +.+.+++.++..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 33566777777777788876 667777777764
No 104
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.98 E-value=0.00013 Score=79.47 Aligned_cols=488 Identities=14% Similarity=0.090 Sum_probs=247.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH
Q 048794 27 LSLKGGLRRASFALEKMRAAGFV-LNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKT 105 (967)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (967)
....+++.+|+.-.+++.++.|. +..-++.++ .+.+.|+.++|..+++.....+.. |..+...+...|...++.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45677888898888888887543 111222222 257788999999888877665443 67788888888888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------ChHH
Q 048794 106 VMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAG----------RLDQ 175 (967)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~ 175 (967)
+..+|+.+... .|+......+..+|.|-+++.+-.+.--++-+. ++.....+=++++...+.- -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999988765 356777777777888877766533333333221 2334444444444444321 1234
Q ss_pred HHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHH-HHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 176 AKEIFLKMKASS-HQPDQVTYITLLDKFSDCGNIEVVKEFWSQ-MVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 176 A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
|.+.++.+.+.+ ......-....+..+...|++++|.+++.. ....-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555666665543 222222233334455667788888888743 333323334444456667777788888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHH
Q 048794 254 RGEGILPNLHTYNTLICGLLR----------------LDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKAL 317 (967)
Q Consensus 254 ~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 317 (967)
..++.. | |...+....+ .+..+...+...+......+...-....+..-+..-|+.+++.
T Consensus 253 l~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred HHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHH
Confidence 776532 2 2222211100 0111111111111111100000000000111111223333322
Q ss_pred HHH-HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048794 318 ETF-EKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN 396 (967)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (967)
..| ++.. +...|..-+..|...=..+.-..++....... ++.....+.+..
T Consensus 329 ~~y~~kfg------~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~------------------~~~s~~~k~l~~---- 380 (932)
T KOG2053|consen 329 SYYFKKFG------DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLAD------------------DDSSGDEKVLQQ---- 380 (932)
T ss_pred HHHHHHhC------CCcHhHhhHHHhhccCCHHHHHHHHHHhhccC------------------CcchhhHHHHHH----
Confidence 221 1111 01111111111211111222222222222110 011111111100
Q ss_pred CCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHH---hC------CCCCC---------HHHHHHHHHHHHhcCCH
Q 048794 397 GCEPDVIVMNTLIDTLYKADR-----VDEAWEMFCRMK---DM------KLAPT---------VVTYNTLLSGLGKEGQV 453 (967)
Q Consensus 397 ~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~---~~------~~~~~---------~~~~~~l~~~~~~~g~~ 453 (967)
+...+..--..|. -+.-...+.+.. +. +.-|+ ..+.+.++..+.+.++.
T Consensus 381 --------h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~ 452 (932)
T KOG2053|consen 381 --------HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDL 452 (932)
T ss_pred --------HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 0000000001110 111111111110 11 11112 23446677788888776
Q ss_pred H---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHH
Q 048794 454 Q---KAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFF 530 (967)
Q Consensus 454 ~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 530 (967)
. +|+-+++.-... -+.|..+-..+++.|+-.|-+..|.+.+..+.-+++..|..-+ .+...+...|++..+...+
T Consensus 453 ~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~ 530 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTF 530 (932)
T ss_pred HHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHH
Confidence 5 455555555443 3457777788899999999999999999998777665444332 3455677789999999999
Q ss_pred HHHHhhcCCChhHHHhHHHHHHhcCChhHHHH
Q 048794 531 HQMRKWLYPDHITLCTLLPGVVKDGQIEDAFR 562 (967)
Q Consensus 531 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 562 (967)
+...+....+..-....+....+.|.|++-.+
T Consensus 531 ~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~e 562 (932)
T KOG2053|consen 531 NEHLKFYDSSLKETPEYIALAYRRGAYSKIPE 562 (932)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHcCchhhhHH
Confidence 88887655555555555555566777766444
No 105
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=5.5e-08 Score=98.20 Aligned_cols=202 Identities=15% Similarity=0.089 Sum_probs=139.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH--HHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG-RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDV--ETAC 808 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~ 808 (967)
+..++|+..+.+++..+ +.+..+|.....++...| ++++++..++++++.+ +.+..+|+.-..++.+.|+. ++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 44556666666666642 223335555555566666 5688888888887764 23555777766666666653 6778
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHH
Q 048794 809 ELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS---GRI----EEALSL 880 (967)
Q Consensus 809 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~ 880 (967)
.+++++++ ..|. ..+|...+.++...|+++++++.+.++++.+ ..+..+|+..+.++.+. |.+ ++++++
T Consensus 129 ~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 88888887 3554 5788888888888888888888888888765 33566777777666554 222 467777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccC
Q 048794 881 FDEMKKRGISPDLYTYNSLILNLGR----AGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAEN 939 (967)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~ 939 (967)
..+++.. .|.|...|..+..++.. .++..+|...+.+++..+|+++.+ ..|+.+|.+.
T Consensus 206 ~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 7777753 34455888888888877 355677888888888888888888 5788888753
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.1e-07 Score=86.58 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
|..+..+....|+.+.|..+++++.+. ++.+..+-..-+..+...|++++|+++|+..++. +|. ..++-.-+.+.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHH
Confidence 334444455556666666666666554 2222223222233445556666666666666664 343 234444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG---MVEE 911 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 911 (967)
..|+--+|++.+.+-++. +..|.++|..++++|...|++++|.-++++++=. .|.++..+..++.+++-.| |++-
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 556655666666665553 4556666666666666666666666666666532 2334455556666665554 5566
Q ss_pred HHHhhcCCCcCCCCccc
Q 048794 912 ARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 912 A~~~~~~~l~~~p~~~~ 928 (967)
|.++|.++++++|.+.-
T Consensus 210 arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHhChHhHH
Confidence 66666666666665554
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=1.7e-06 Score=105.13 Aligned_cols=274 Identities=12% Similarity=0.014 Sum_probs=157.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCH----hhHHHHHHHHHccCChHHHHHHHHHHHhCCCC---CC--hhhHHHHH
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDI----STYNLLLDGYGKSGRVEELLKLYEEMSFRGCK---PN--TISHNIVI 725 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~ 725 (967)
...+...|++++|...+++........+. .+...++..+...|++++|...+.++...... +. ..+...+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34455677777777777776653111111 23445566667778888888777776542111 11 12334555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC---ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC--HHHHHHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSG----GFSP---TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYG--CKPN--CVIYNIL 794 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~l 794 (967)
..+...|++++|...+++.... +... ....+..++..+...|++++|...++++.... ..+. ...+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 6677778888887777766553 1111 11223445666667788888888877765421 1111 2244556
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC--CCCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIKG--GIRPDLK--SY--SVLVDCLCMVGRVDDALHYFEELKLNGLDAD---TISYNFMI 865 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 865 (967)
+.++...|++++|.+.++++... ...+... .. ......+...|+.+.|..++........... ...+..++
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 66677788888888888777541 1111110 00 0112334456778888777665443110111 11134567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKR----GISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.++...|++++|...++++... |...+. .++..++.++.+.|+.++|...+.+++++......
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 7778888888888888877632 222222 45566777778888888888888888877655444
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=5.9e-08 Score=91.17 Aligned_cols=152 Identities=11% Similarity=0.167 Sum_probs=96.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 048794 725 ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDV 804 (967)
Q Consensus 725 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 804 (967)
+..|...|+++.......+.... . ..+...++.++++..+++.++.. +.+...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 34566777776654443322211 0 01223566677777777777653 33666777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRPD-LKSYSVLVDCL-CMVGR--VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
++|+..|+++++ ..|+ ...+..++.++ ...|+ .++|.++++++++.+ +.+..++..++..+.+.|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777 3454 56666777654 55565 477777777777653 33566677777777777777777777
Q ss_pred HHHHHHcCCCCCH
Q 048794 881 FDEMKKRGISPDL 893 (967)
Q Consensus 881 ~~~~~~~~~~~~~ 893 (967)
|+++++. .+|+.
T Consensus 167 ~~~aL~l-~~~~~ 178 (198)
T PRK10370 167 WQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHhh-CCCCc
Confidence 7777764 45544
No 109
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=6.6e-07 Score=90.47 Aligned_cols=125 Identities=12% Similarity=0.038 Sum_probs=54.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 048794 654 LIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG-RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSN 732 (967)
Q Consensus 654 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 732 (967)
+-..+...+..++|+..+.++++.+ +-+..+|+..+.++...| ++++++.+++++...+ +.+..+|.....++...|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3333444555555555555555543 113344544444444444 3455555555555443 223334444444333333
Q ss_pred CH--HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 048794 733 SI--DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 733 ~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 781 (967)
.. ++++..++++++.+ +.+-.+|.....++...|+++++++.++++++
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 31 33344444444332 22223334444444444444444444444444
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=9.3e-08 Score=94.72 Aligned_cols=186 Identities=14% Similarity=0.038 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 048794 718 TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP--TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC--VIYNI 793 (967)
Q Consensus 718 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 793 (967)
...+...+..+...|++++|...+++++...+.. ...++..++.++.+.|++++|+..++++++..+.... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3455555566666666666666666665542211 1134455566666666666666666666654221111 13444
Q ss_pred HHHHHhcc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 794 LINGFGKT--------GDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 794 l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
++.++... |++++|++.|+++++. .|+. .....+..... ... .. ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~-------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RL-------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HH-------HHHHHHH
Confidence 55555443 4556666666666552 3432 11111110000 000 00 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--C-CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 865 INGLGRSGRIEEALSLFDEMKKRGIS--P-DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
+..+.+.|++++|+..++++.+. .+ | ....+..++.++...|++++|..+++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56666777777777777776643 11 1 235666777777777777777776665544333
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=5e-08 Score=90.06 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=139.8
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
+...+-...... +.+..+ ..+...+...|+-+....+..+..... +.|......++....+.|++..|+..+.++..
T Consensus 52 a~~al~~~~~~~-p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAVLRN-PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHhcC-cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 443333333332 334444 677888888999888888888876542 44666777788889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 048794 817 GGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTY 896 (967)
Q Consensus 817 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 896 (967)
. -+||..+|+.++.+|.+.|++++|..-|.++++.. .-++..+++++-.|.-.|++++|..++...... -+.|+.+.
T Consensus 129 l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~ad~~v~ 205 (257)
T COG5010 129 L-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PAADSRVR 205 (257)
T ss_pred c-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCchHHH
Confidence 4 34557899999999999999999999999999852 346778899999999999999999999998753 23367888
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 897 NSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 897 ~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
..++.+....|++.+|++...+-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 899999999999999999887543
No 112
>PF13041 PPR_2: PPR repeat family
Probab=98.87 E-value=7.3e-09 Score=72.11 Aligned_cols=49 Identities=45% Similarity=0.773 Sum_probs=33.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048794 225 ADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLL 273 (967)
Q Consensus 225 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 273 (967)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4666666666666666666666666666666666666666666666665
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=6.7e-07 Score=82.79 Aligned_cols=180 Identities=14% Similarity=0.161 Sum_probs=133.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..+...+...|+-+.+..+....... .+.+.......+....+.|++..|+..+.++.... ++|...|+.++.+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 66667777778877777777665543 24444455557888888999999999999988764 56888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|+.++|...|.+.++ +.|+ ....++++..+.-.|+++.|..++..+...+ .-+..+-.+|+.+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999988 4665 5678888888888899999999998888653 33666777888888999999999888
Q ss_pred HHHHHHcCCCCCH-HhHHHHHHHHHhcCCH
Q 048794 881 FDEMKKRGISPDL-YTYNSLILNLGRAGMV 909 (967)
Q Consensus 881 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 909 (967)
..+-.. ++.. .....|.......|.+
T Consensus 225 ~~~e~~---~~~~~~~~~~l~~~~~~~~~~ 251 (257)
T COG5010 225 AVQELL---SEQAANNVAALRAAASQSGAW 251 (257)
T ss_pred cccccc---chhHhhHHHHHHHhhcccchh
Confidence 766542 2222 3333444444444443
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=4.3e-07 Score=85.38 Aligned_cols=118 Identities=9% Similarity=0.137 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC--HHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF-GKTGD--VETA 807 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A 807 (967)
.++.+++...+++.+..+ +.+...|..++..|...|++++|+..|+++.+.. +.+...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555544442 3344455555555555555555555555555542 12344555555542 34444 3555
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 808 CELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.++++++++. .|+ ..++..++..+...|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555552 343 345555555555555555555555555543
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=5e-06 Score=101.10 Aligned_cols=235 Identities=14% Similarity=0.037 Sum_probs=114.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC---Cc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC---Chhh
Q 048794 653 YLIHGLLEVHATEMGLDLFTTMKNAGC---AP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFR----GCKP---NTIS 720 (967)
Q Consensus 653 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~ 720 (967)
.++..+...|++++|...+.+...... .+ ...++..++..+...|++++|...+++.... +... ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 334444555666666555555543210 00 1123344455556666666666666655432 1000 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHH----
Q 048794 721 HNIVISGLVKSNSIDKAMDLFYNLVSG----GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIY---- 791 (967)
Q Consensus 721 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~---- 791 (967)
+..+...+...|++++|...+.++... +.......+..++.++...|++++|...++++....... ....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 223344455566666666666665442 101112233345556666677777777666664320000 00000
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 048794 792 -NILINGFGKTGDVETACELFKQMIKGGIRPD---LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYN 862 (967)
Q Consensus 792 -~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~ 862 (967)
...+..+...|+.+.|...+........... ...+..++.++...|++++|...++++... +... ...++.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 0011233445666777666655433110001 011345566666777777777777766531 2111 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
.++.++...|+.++|...+.++++.
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666677777777777777777643
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=3.1e-07 Score=96.69 Aligned_cols=215 Identities=17% Similarity=0.099 Sum_probs=160.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 686 YNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 686 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
-..++..+.+.|-...|+.+|++.. .|...+.+|...|+...|..+..+.+++ +|++..|..++++...
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3456778888899999999988765 3566778888889888888888887773 6777778777777666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
.--++.|.++.+.... .+...++....+.++++++.+.|+...+ ..|- ..+|+.++.+..+.+++..|.+
T Consensus 470 ~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHH
Confidence 6556666666655433 1223333334457888888888888777 3453 6788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 845 YFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
.|...+... +.....|+++.-+|.+.|+-.+|...++++++.. ..+-.+|.+..-+....|.+++|++.+.+.+.+
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 888888743 3466788888888888888888888888888764 334577777888888888888888888877644
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=0.00011 Score=75.14 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG---RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACEL 810 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 810 (967)
.+++..++++.+..-...+...|..+++.-...- ..+..-..+++++..-...-..+|..++..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666665433333344444443222111 2444555666665431111123666677766666677788888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 811 FKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 811 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
|.++.+.+..+ ++-....++..+|. ++.+-|.++|+.-+.. +..++.-....++-+.+.|+-..|..+|++++..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88888765555 34455566665554 6777888888776643 344555555677777788888888888888876556
Q ss_pred CCCH--HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 890 SPDL--YTYNSLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 890 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
+++. .+|..++.-=..-|+...+.++-++-...-|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 6654 7788888777777888877777665555544
No 118
>PF13041 PPR_2: PPR repeat family
Probab=98.85 E-value=8.8e-09 Score=71.70 Aligned_cols=49 Identities=41% Similarity=0.775 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048794 155 PDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFS 203 (967)
Q Consensus 155 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 203 (967)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665556666666666555554
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.84 E-value=1.1e-06 Score=98.90 Aligned_cols=284 Identities=10% Similarity=0.078 Sum_probs=186.0
Q ss_pred CCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhh
Q 048794 505 PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLV 584 (967)
Q Consensus 505 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 584 (967)
.+...+..++..+...+++++|..+.+...+..|.....++.++..+.+.+++.++.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~----------------- 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL----------------- 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh-----------------
Confidence 35667788888888888888888888888887787777777777777777765554322 11
Q ss_pred hhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 048794 585 GGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHAT 664 (967)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 664 (967)
+.......++
T Consensus 90 ----------------------------------------------------------------------l~~~~~~~~~ 99 (906)
T PRK14720 90 ----------------------------------------------------------------------IDSFSQNLKW 99 (906)
T ss_pred ----------------------------------------------------------------------hhhcccccch
Confidence 1111122223
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNL 744 (967)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 744 (967)
.-...++..+.+. ..+..++..++.+|.+.|+.++|..+|++++..+ +.|..+.+.++-.|... +.++|+.++.++
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 2223333444443 2345577888888888999999999999988886 55777888888888888 888888888887
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCH
Q 048794 745 VSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG-GIRPDL 823 (967)
Q Consensus 745 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~ 823 (967)
+.. |...+++..+..++.++....+. +...+..+.. ++... |..--.
T Consensus 176 V~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~----------------ki~~~~~~~~~~ 223 (906)
T PRK14720 176 IYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIER----------------KVLGHREFTRLV 223 (906)
T ss_pred HHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHH----------------HHHhhhccchhH
Confidence 753 55566888888888888875211 2223332222 22221 111123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR-GISPDLYTYNSLILN 902 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 902 (967)
.++.-+-..|...++|++++.+++.+++.. +.+..+...++..|. +++.. -..++..++. ++..
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~----------- 288 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGN----------- 288 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcccc-----------
Confidence 456666777888889999999999999864 446666777777765 32222 2233333210 1111
Q ss_pred HHhcCCHHHHHHhhcCCCcCCCCccccc
Q 048794 903 LGRAGMVEEARKLAGGNCFVQPSEFVSS 930 (967)
Q Consensus 903 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 930 (967)
.-.++..|+.-|++.+..+|.|+..+
T Consensus 289 --~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 289 --NRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred --CCccHHHHHHHHHHHeeecCCCEEEE
Confidence 11467889999999999999999864
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=3.4e-07 Score=102.27 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=95.8
Q ss_pred CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 048794 749 FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSY 826 (967)
Q Consensus 749 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 826 (967)
.+.+...+..++.+..+.|++++|+.+++.+.+. .||. ..+..++.++.+.+++++|+..+++.+. ..|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 3445666777777777777777777777777774 4443 3666677777777777777777777777 3565 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
..++.++.+.|++++|..+|++++..+ +.+..++..++.++...|+.++|...|+++.+. ..|....
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~ 224 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARK 224 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHH
Confidence 667777777777777777777777632 334666777777777777777777777777653 3444433
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=4.3e-07 Score=89.99 Aligned_cols=186 Identities=13% Similarity=-0.020 Sum_probs=136.8
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--h
Q 048794 680 APDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT---ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP--C 754 (967)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ 754 (967)
......+..++..+.+.|++++|+..|+++.... +.+. .++..++.++...|++++|+..++++++..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3466778889999999999999999999998874 2222 46788899999999999999999999987432222 2
Q ss_pred cHHHHHHHHHcC--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 048794 755 TYGPLIDGLSKS--------GRLEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS 825 (967)
Q Consensus 755 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 825 (967)
++..++.++... |++++|++.++++.+. .|+. ..+..+...... .. . . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~----~~------~-~-------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYL----RN------R-L-------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHH----HH------H-H-------HHH
Confidence 567778888765 7899999999999986 3443 233222211110 00 0 0 012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGL--DADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
...++..+...|++++|+..++++++... +.....+..++.++...|++++|..+++.+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34677889999999999999999986421 22457888999999999999999999888874
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=3.5e-07 Score=81.15 Aligned_cols=122 Identities=13% Similarity=0.048 Sum_probs=83.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.+++++++. .|+ .+...+..+...|++++|+..|++++. ..|+ ..++..++.++...|++++|+..|++++..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666653 333 355567777778888888888888777 3554 567778888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
+ +.++.++..++.++...|++++|+..|+.+++. .+.+...+...+.+.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-SYADASWSEIRQNAQ 136 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHH
Confidence 3 446677777888888888888888888887753 233345554544443
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=4e-06 Score=76.81 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048794 730 KSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACE 809 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 809 (967)
..|..+.|...++++... ++....+-..-+..+...|++++|+++|+.+++.+ +.|.+++-.-+.+.-.+|+--+|++
T Consensus 64 d~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 334444444444444333 12222233333333444455555555555555443 2233344443334444444445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 048794 810 LFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG---RIEEALSLFDEMKK 886 (967)
Q Consensus 810 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 886 (967)
-+...++. +..|..+|..++.+|...|++++|.-.+++++-.. |-++-.+..++++++-.| +.+-|.++|.++++
T Consensus 142 ~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555543 33344555555555555555555555555554321 223334444555544333 34445555555553
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.76 E-value=9.1e-08 Score=85.12 Aligned_cols=115 Identities=18% Similarity=0.087 Sum_probs=75.8
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048794 810 LFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 810 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 888 (967)
+|++++. ..|+ ......++..+...|++++|.+.++++...+ +.+...+..++.++...|++++|...++++.+.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4555555 3444 3455666677777777777777777766643 335566667777777777777777777776653
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 889 ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 889 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.+.+...+..++.++...|++++|.++++++++++|+++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3334566667777777777777777777777777777666
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=6.1e-07 Score=100.80 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHH
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPD-ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNI 723 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 723 (967)
+....++..|+..+...+++++|.++.+..++. .|+ ...|..++..+.+.++.+++..+ .+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 445667777777777777777777777766654 333 33444555566666665555544 33222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD 803 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 803 (967)
.....++.....++..+.. ...+..++..++.+|.+.|+.++|..+|+++++.. +.+..+.|.++..|... +
T Consensus 93 ----~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 ----FSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ----cccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 1111222112222222222 12233366667777777777777777777777764 33566777777777776 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHH
Q 048794 804 VETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG-RSGRIEEALSLFD 882 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 882 (967)
.++|++++.+++.. +...+++.++.++|.++.... +.+...+..+..... ..| +..
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~-~~~------ 221 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHRE-FTR------ 221 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhc-cch------
Confidence 77777777777652 334446666666666666532 112222221111111 111 111
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee
Q 048794 883 EMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY 936 (967)
Q Consensus 883 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~ 936 (967)
-...+.-+-..|...++|++++.+++.+|+.+|.|..+ ..|+.-|
T Consensus 222 ---------~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 222 ---------LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred ---------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 11223334444555566777777777777777776666 4444444
No 126
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.8e-06 Score=82.49 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=59.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYG---CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCM 835 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 835 (967)
++-..+.|++..|.+.|.+++... ..++...|...+.+..+.|+..+|+.--+.+++ +.|. ...+..-+.++.-
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHH
Confidence 344556677777777777777532 123344566666677777777777777777776 4555 4556666677777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048794 836 VGRVDDALHYFEELKLN 852 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~~ 852 (967)
.++|++|.+.|+++.+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777777777653
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=3.3e-06 Score=94.55 Aligned_cols=215 Identities=12% Similarity=0.119 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHH-HHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLD-LFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVI 725 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (967)
++.....+-.+....|..++|-. +..+..+ ++..........+++.-....... .+.+...+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 34445555556667777777643 3323221 222232223333333333333333 355678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVE 805 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 805 (967)
....+.|.+++|..+++.+.+.. +........++..+.+.+++++|+..++++++..+ .+....+.++.++.+.|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999873 45566788899999999999999999999998642 25568888899999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 806 TACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 806 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
+|+++|++++.. .|+ ..++..++.++...|+.++|...|+++++.. .+....|+.+ .++...-...++.+
T Consensus 172 ~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~ 242 (694)
T PRK15179 172 QADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR------LVDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH------HHHHHHHHHHHHHc
Confidence 999999999983 555 6899999999999999999999999999753 4444554433 23334444555555
Q ss_pred H
Q 048794 885 K 885 (967)
Q Consensus 885 ~ 885 (967)
-
T Consensus 243 ~ 243 (694)
T PRK15179 243 G 243 (694)
T ss_pred C
Confidence 4
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=9.1e-07 Score=93.31 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=140.3
Q ss_pred hcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh
Q 048794 605 CNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS 684 (967)
Q Consensus 605 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 684 (967)
..+.|+.-..-..++..+...|=+..|...|++. ..+-..+..|...|+..+|..+..+.+++ +|+..
T Consensus 391 a~~lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ 458 (777)
T KOG1128|consen 391 APHLPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPR 458 (777)
T ss_pred cCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcch
Confidence 4555555666677777777777777777777665 45666666677777777777776666653 45666
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLS 764 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 764 (967)
.|..+++.....--+++|.++++..... +-..+.......+++.++.+.++.....+ +....+|..++-+..
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 6666666655555566666665543321 22333333344667777777777666653 334456666666666
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPN-CVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
+.++++.|.+.|...... .|| ...|+++..+|.+.++-.+|...++++++-+ ..+...|.+.+.+....|.+++|.
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 777777777777777664 344 3467777777777777777777777776643 233445556666666667777777
Q ss_pred HHHHHHHH
Q 048794 844 HYFEELKL 851 (967)
Q Consensus 844 ~~~~~~~~ 851 (967)
+.++++.+
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 77776664
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=8.7e-08 Score=90.27 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=71.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCC
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGM 908 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 908 (967)
+.-+.+.++|.+|+..|.++++.+ +.+++.|+.-+.+|.+.|.++.|++-.+.++. +.|.. ..|..|+.++...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 445566777888888888877753 34667777777788888888888877777775 45554 677777778888888
Q ss_pred HHHHHHhhcCCCcCCCCcccc
Q 048794 909 VEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 909 ~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+++|+..|+|+|+++|+|..+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHH
Confidence 888888888888888888776
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.1e-05 Score=74.70 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=154.3
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (967)
++-++-.|++..+...-.+.... +.++.....+.+.|...|.+...+. .+... -.|...+...+.......++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcch
Confidence 45566677877777666555322 2445555556666777776654332 22222 14455555555555555566
Q ss_pred hHHHHHH-HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 699 VEELLKL-YEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 699 ~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
.++-+.- ++.+.......+......-+..|++.+++++|++...... +......-...+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433 3444433333343444445566788888888888776521 12233334556677778888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 778 EMLDYGCKPNCVIYNILINGFG----KTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 778 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
+|.+. . +..+.+.|+.++. ..+++.+|.-+|+++.++ ..|+..+.+..+.++...|++++|..+++.++...
T Consensus 162 ~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 88874 2 4456666666653 234678888888888775 57777888888888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 048794 854 LDADTISYNFMINGLGRSGRI-EEALSLFDEMK 885 (967)
Q Consensus 854 ~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 885 (967)
..++.++.+++-.-...|.- +--.+.+.++.
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44677777666666666654 34445555555
No 131
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=2.4e-06 Score=96.41 Aligned_cols=203 Identities=15% Similarity=0.099 Sum_probs=110.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC---hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 048794 715 KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPT---PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVI 790 (967)
Q Consensus 715 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 790 (967)
|.++..|...+.-..+.++.+.|.++.++++.. ++... ...|.++.+.-...|.-+...++|+++.+. -....+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334455566666666666666666666666554 11111 123444444444455555556666666653 112235
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGL 868 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 868 (967)
|..|...|.+.+++++|.++|+.|.+. +......|..++..+.++++-++|..+++++++.- +. -.....-.++.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHH
Confidence 556666666666666666666666654 22334556666666666666666666666665431 11 122333445555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
.+.|+.+.+..+|+..+.. .|...+.|..++..-.++|+.+-++.+|++++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 5666666666666666543 3444566666666666666666666666666543
No 132
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=9.6e-06 Score=91.79 Aligned_cols=246 Identities=16% Similarity=0.091 Sum_probs=173.4
Q ss_pred HHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcC
Q 048794 528 WFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
+=|.+.....|++...|...+.-+.+.+..+.|.+..++++...+...+
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe------------------------------- 1493 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE------------------------------- 1493 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-------------------------------
Confidence 3345555557777788888877777778777777777766543211111
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN 687 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (967)
......|.++++.-..-|.-+...++|+++.+. ......|.
T Consensus 1494 -------------------------------------eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1494 -------------------------------------EEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred -------------------------------------HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 122345666666666677777778888888875 23455677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhcHHHHHHHHHcC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP-TPCTYGPLIDGLSKS 766 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 766 (967)
.|...|.+.+.+++|.++|+.|.+.. ......|...+..+.++++-+.|..++.++++.-+.. ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88889999999999999999998874 4456678888888899998899999999988863221 233455567777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL--KSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 844 (967)
|+.+.+..+|+..+... +.-...|+.++..-.++|+.+.+..+|++++..++.|.. ..|......-...|+-..+..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999888763 335668999999888999999999999999988777763 233333333344455444433
Q ss_pred H
Q 048794 845 Y 845 (967)
Q Consensus 845 ~ 845 (967)
+
T Consensus 1693 V 1693 (1710)
T KOG1070|consen 1693 V 1693 (1710)
T ss_pred H
Confidence 3
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.64 E-value=0.00092 Score=68.73 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 383 VDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAP-TVVTYNTLLSGLGKEGQVQKAIELFE 461 (967)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (967)
.+.....++++...-...-..+|-.++...-+..-+..|+.+|.++.+.+..+ .+...++++..+| +++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555566666544222223456677777777788999999999998876666 6777788887776 488899999998
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCC--CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcC
Q 048794 462 GMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWP--DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLY 538 (967)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (967)
--+.. ...++.-....+.-+...++-..|+.+|++++.....+ ...+|..++..-..-|+...++++-++.....+
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 76654 33445555566777788889999999999998874333 347888888888888999998888887766555
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=5.3e-05 Score=70.30 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=102.0
Q ss_pred HHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 671 FTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS 750 (967)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 750 (967)
.+.+.......+......-+..|.+.|++++|++..+... +..+...-..+..+..+.+-|....++|.+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3344443323333333334456777777777777766522 1222223334455666777777777777763
Q ss_pred CChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048794 751 PTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSY 826 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 826 (967)
.+..+...++.++.+ .+.+.+|.-+|+++.++ .+|++.+.+-.+.++...|++++|..+++.++.+. ..+..++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHH
Confidence 233455555555543 34577888888888764 46777777777878888888888888888887751 2335677
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDAL-HYFEELKL 851 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~-~~~~~~~~ 851 (967)
.+++.+--..|+..++. +.+.+...
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 77766666667655443 44444443
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.9e-05 Score=76.54 Aligned_cols=292 Identities=12% Similarity=-0.030 Sum_probs=180.4
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
.+.+..++..|+..+..+++..+. +...|..-+..+..-|++++|..-.++-.+..+..+.......+++...+...+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344455566666666666655422 3444555555566666677666666666665555555666666666666665555
Q ss_pred HHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHH
Q 048794 561 FRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTE 640 (967)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 640 (967)
.+.++..- .+ ....+...+++.+.
T Consensus 137 ~~~~~~~~----------------------------------------------------~~----~~anal~~~~~~~~ 160 (486)
T KOG0550|consen 137 EEKLKSKQ----------------------------------------------------AY----KAANALPTLEKLAP 160 (486)
T ss_pred HHHhhhhh----------------------------------------------------hh----HHhhhhhhhhcccc
Confidence 55544100 00 11112222222221
Q ss_pred hcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh
Q 048794 641 NLGVTSTLEMYNYL-IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI 719 (967)
Q Consensus 641 ~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 719 (967)
...-+|.-..+..+ +..+.-.+++++|...--.+++.. ..+..++..-+.++.-.++.+.|+.-|++.+..+ |+..
T Consensus 161 s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~ 237 (486)
T KOG0550|consen 161 SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQ 237 (486)
T ss_pred cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhh
Confidence 11112222223333 345668889999988888887754 2355555555666777889999999999998874 4432
Q ss_pred h-------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 048794 720 S-------------HNIVISGLVKSNSIDKAMDLFYNLVSGGF---SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYG 783 (967)
Q Consensus 720 ~-------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 783 (967)
. +..-++-..+.|.+..|.+.|.+++..++ .+....|...+.+..+.|+.++|+.--+.+++.
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i- 316 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI- 316 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-
Confidence 1 22223445678999999999999998743 334456888888999999999999999999874
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 048794 784 CKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLC 834 (967)
Q Consensus 784 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 834 (967)
.+.. ..+..-+.++...++|++|.+-|+++.+....+.. .++......+-
T Consensus 317 -D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 317 -DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 3332 25666677888899999999999999885333332 34433333333
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=7.4e-06 Score=82.91 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
....+..+...|.+++|+..+..++..- +.|...+...+..+.+.|+..+|.+.+++++. ..|+ .....+++.+|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHH
Confidence 3334444455555566666665555531 22333444445555556666666666666555 3454 344455556666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALS 879 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 879 (967)
+.|++.+|+..++.....+ +.++..|..|+++|...|+..+|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 6666666666655555432 4455556666666665555555443
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.0046 Score=68.00 Aligned_cols=224 Identities=17% Similarity=0.194 Sum_probs=151.0
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048794 62 ILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVA--AGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKID 139 (967)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 139 (967)
....++++.|+...+++.+. .|+. .|..++.+ +.+.|+.++|..+++.....+ ..|..+...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 35678999999999999875 4655 33444444 468999999998888776555 347888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC----------CHH
Q 048794 140 EAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCG----------NIE 209 (967)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~ 209 (967)
+|..+|++.... -|+......+..+|.+.+.+.+-.++--++-+ ..+-....+-+++..+...- -..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999875 46677777888889998887665444444333 23444555555555443221 123
Q ss_pred HHHHHHHHHHhCC-CCCcHhHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 048794 210 VVKEFWSQMVADG-YAADVVTYTIFVDALCKVGNVEEAFSIL-DLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNN 287 (967)
Q Consensus 210 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 287 (967)
-|....+.++..+ ...+..-...-...+-..|++++|.+++ ....+.-...+...-+.-+..+...++|.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666543 2223333334445556788899999988 3444443333444445556667778888888888888
Q ss_pred HHHcC
Q 048794 288 MEILG 292 (967)
Q Consensus 288 ~~~~~ 292 (967)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 77765
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=7.8e-06 Score=72.61 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=69.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 775 LFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
.+++++... +.+......++..+...|++++|++.++++... .| +...+..++.++...|++++|...+++++..+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555532 113345555666666777777777777777663 34 35666677777777777777777777776643
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 854 LDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 854 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+.+...+..++.++...|++++|...++++++
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666677777777777777777777775
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.42 E-value=0.00014 Score=73.53 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=26.2
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 759 LIDGLSKS-GRLEEAKKLFEEMLDYGC---KPN--CVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 759 l~~~~~~~-g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
++..|... |++++|++.|+++.+.-. .+. ..++..++.++.+.|++++|+++|+++..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555 556666666655543200 000 11344455555555555555555555544
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=1e-05 Score=72.30 Aligned_cols=115 Identities=20% Similarity=0.135 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH
Q 048794 801 TGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD--TISYNFMINGLGRSGRI 874 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 874 (967)
.++...+...++.+.+. .|+ ..+...++.++...|++++|...|+.++....+|. ..+...|+.++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555555556665553 222 23334455556666666666666666665331221 22344456666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 875 EEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
++|+..++.... -+..+..+...+.++.+.|++++|+..|+++
T Consensus 102 d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666644321 1223344555666666666666666666554
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=9.5e-05 Score=75.18 Aligned_cols=141 Identities=19% Similarity=0.260 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 048794 723 IVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN-CVIYNILINGFGKT 801 (967)
Q Consensus 723 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 801 (967)
...-.+...|++++|+..++.++.. .+.++..+...++.+.+.|+..+|.+.+++++.. .|+ ...+..++.+|.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 3333445556666666666665554 2344444445556666666666666666666664 333 44566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++.+|+..+++.... .| +...|..|+.+|...|+-.+|..- .++.|...|++++|+..
T Consensus 388 g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 388 GKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLEQAIIF 447 (484)
T ss_pred CChHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHHHHHHH
Confidence 6666666666666553 33 345666666666666555444332 33344456666666666
Q ss_pred HHHHHH
Q 048794 881 FDEMKK 886 (967)
Q Consensus 881 ~~~~~~ 886 (967)
+..+.+
T Consensus 448 l~~A~~ 453 (484)
T COG4783 448 LMRASQ 453 (484)
T ss_pred HHHHHH
Confidence 666654
No 142
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.39 E-value=0.00011 Score=74.31 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=61.9
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT-GDVETACELFKQMIK----GGIRPD--LKSYSVLVDCLC 834 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~ 834 (967)
.|...|++..|-+++.++-+ +|... |++++|++.|+++.+ .| .+. ...+..++.++.
T Consensus 103 ~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 34555555555555554432 23333 555555555555543 11 111 233445555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHhHHHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDA-----DT-ISYNFMINGLGRSGRIEEALSLFDEMKKR--GISPD--LYTYNSLILNLG 904 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~ 904 (967)
+.|++++|.+.|+++....... +. ..+...+-++...|+...|...+++.... ++... ......|+.++-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 6666666666665555321111 11 12223333444555666666665555421 11111 123334444443
Q ss_pred hc--CCHHHHHHhhcCCCcCCC
Q 048794 905 RA--GMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 905 ~~--g~~~~A~~~~~~~l~~~p 924 (967)
.. ..+++|+.-|.++..++|
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 32 345555555555555543
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=1.5e-05 Score=71.21 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=86.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPN---CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 839 (967)
..++...+...++.+.+.. +.+ ......++..+...|++++|...|+.++.....|+ ..+...++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 4678888888888888763 223 22555567778888999999999999888642333 23566788889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
++|+..++..... ...+..+..++++|...|++++|...|+++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999998764332 234556778899999999999999998875
No 144
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.34 E-value=2.3e-06 Score=83.64 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=81.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC-CCCCHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIK----GGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELK----LNG-LDADTI 859 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~ 859 (967)
.|..|+..|.-.|+++.|+..-+.-+. -|-+.. ..++.+++.++...|+++.|.++|+..+ +.+ -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666667777777777776554332 222222 3566777778887888888888877654 222 112334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcC-CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMK----KRG-ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
....|+.+|.-..++++|+.+..+=+ +.+ .......+++|+.++...|..++|..++++.++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45557777777777888877766543 111 112335667777777777887877777776553
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=4.3e-06 Score=72.45 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLD-A-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD----LYTYNS 898 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 898 (967)
+++.++..+...|++++|...+++++..... + ....+..++.++...|++++|...++.+... .|+ ..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 4555566666666666666666666543211 0 1334555666666666666666666666532 122 345556
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 899 LILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 899 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
++.++...|++++|.++++++++..|+++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666666666666666666666666666654
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=6e-06 Score=68.51 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++.+.+. .+.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHH
Confidence 4455566666666666666666665532 223345555666666666666666666666543 23333556666666666
Q ss_pred cCCHHHHHHhhcCCCcCCC
Q 048794 906 AGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 906 ~g~~~~A~~~~~~~l~~~p 924 (967)
.|++++|...+++++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 6666666666666666655
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.26 E-value=5.7e-06 Score=86.24 Aligned_cols=105 Identities=11% Similarity=-0.002 Sum_probs=77.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048794 793 ILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS 871 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 871 (967)
..+..+...|++++|+..|+++++. .|+ ...+..++.+|...|++++|+..+++++..+ +.+..+|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 3455566778888888888888873 555 5677788888888888888888888888753 34667788888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHH
Q 048794 872 GRIEEALSLFDEMKKRGISPD-LYTYNSLILN 902 (967)
Q Consensus 872 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 902 (967)
|++++|+..|+++++. .|+ ..+...+..+
T Consensus 84 g~~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 8888888888888863 344 3444444433
No 148
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.26 E-value=2.3e-05 Score=76.83 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHH----CCC-CCCH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSG----GFS-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD----YGC-KPNC 788 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~ 788 (967)
.++..+++.|.-.|+++.|+...+.-+.. |.. ....++..+++++.-.|+++.|.+.|+..+. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35667777888889999988766543322 211 1235677888999999999999999987653 221 1233
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIK----G-GIRPDLKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
.+...|+..|.-...+++|+.++.+-+. . +......++.+|+.++...|..++|+.+.+..+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4677888888888889999999887653 1 122335678899999999999999988887765
No 149
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.25 E-value=0.006 Score=60.25 Aligned_cols=288 Identities=13% Similarity=0.064 Sum_probs=184.9
Q ss_pred hccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH--HHHHHHHccCChHHH
Q 048794 625 QKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN--LLLDGYGKSGRVEEL 702 (967)
Q Consensus 625 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 702 (967)
.||-..|++.-.+..+.......+.+...-+..-.-.|++++|.+-|+.|++ .|....+. -|.--..+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 4555555555544322211122222222223445578999999999999996 34433222 222223467888999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChh----cHHHHHHHHHc-CCCHHHHHHHH
Q 048794 703 LKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGG-FSPTPC----TYGPLIDGLSK-SGRLEEAKKLF 776 (967)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~-~g~~~~A~~~~ 776 (967)
..+-.++.... +.-...+...+...+..|+++.|+++.+...... +.++.. .-..-+.+... .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 98888887663 3345677888888999999999999988766542 222221 11111111111 12355566666
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---HHC
Q 048794 777 EEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEEL---KLN 852 (967)
Q Consensus 777 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~ 852 (967)
.+..+. .||.. .-..-+..+.+.|+..++-.+++.+.+. .|....+ +...+.+.|+. ++.-++++ .+
T Consensus 253 ~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~s- 323 (531)
T COG3898 253 LEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIA--LLYVRARSGDT--ALDRLKRAKKLES- 323 (531)
T ss_pred HHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHH--HHHHHhcCCCc--HHHHHHHHHHHHh-
Confidence 666663 66765 3344466788999999999999999985 4444332 22334555653 33333333 23
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCHHHHHHhhcCCCcCCCCcccc
Q 048794 853 GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA-GMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 853 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++| +.+....++++-...|++..|..--+.+.+ ..|...+|..|+.+-... |+-.++..++-+++ ..|.+|.|
T Consensus 324 -lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav-~APrdPaW 398 (531)
T COG3898 324 -LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV-KAPRDPAW 398 (531)
T ss_pred -cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh-cCCCCCcc
Confidence 344 566777788888999999999998888875 678888888888887766 99999999999987 67888888
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.25 E-value=1e-06 Score=65.87 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
.++..+...|++++|.+.|+++++. .|.+..++..++.++...|++++|+.+++++++.+|+||
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3677888889999999999998864 233458888889999999999999999999999998876
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=4.4e-05 Score=66.08 Aligned_cols=93 Identities=8% Similarity=-0.034 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
....++..+...|++++|..+|+-+.. +.|. ..-|..|+-++...|++++|+..|..+...+ +.++..+..++.++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 444555555666777777777776665 4554 3556666666666777777777777666644 34556666667777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 048794 869 GRSGRIEEALSLFDEMK 885 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~ 885 (967)
...|+.+.|.+.|+.++
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777776665
No 152
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.21 E-value=3.3e-05 Score=66.83 Aligned_cols=104 Identities=11% Similarity=-0.125 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
....+.++.-+...|++++|..+|+-....+ +.+...|..|+-++...|++++|+..|..+.... +.++..+..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 4677888888999999999999999888743 3366778889999999999999999999998652 4456899999999
Q ss_pred HHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 903 LGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 903 ~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+...|+.+.|++.|+.++..--++|.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999988877644444
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.8e-06 Score=82.51 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 048794 803 DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG---RIEEAL 878 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 878 (967)
..+..+.-++.-+.. +|+ ...|..|+.+|...|+++.|..-|.++.+.. .+++..+..++.+++.+. ...++.
T Consensus 137 ~~~~l~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 456666666665553 454 6788888888888888888888888888753 456777777887765444 467788
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 879 SLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+++++++. -+.|.....-|+..++..|+|.+|...++..++..|.+..+
T Consensus 214 ~ll~~al~~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 214 ALLRQALAL-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 888888863 23344777788888888888888888888888888887775
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.16 E-value=2.2e-05 Score=72.73 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
..+..++..+...|++++|+..|+++++.+..|. ...+..++.++.+.|++++|...++++++.. +.+...+..++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3677777778788888888888888876322222 3567778888888888888888888887643 334556667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
++...|+...+...++.+.. .+++|.+.+++++.++|++..
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~~~ 155 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNNYI 155 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchhHH
Confidence 88777777666655444431 268889999999999999853
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.16 E-value=1.4e-05 Score=73.77 Aligned_cols=100 Identities=12% Similarity=-0.006 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHY 845 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 845 (967)
+..+...+..+.+.... .....|..++..+...|++++|+..|++++.....|. ..++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455555555322111 1123556666666666666666666666665311111 23566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 846 FEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
+++++... +.....+..++.++.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 66666532 223445555666655
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=1.9e-05 Score=74.89 Aligned_cols=131 Identities=23% Similarity=0.281 Sum_probs=93.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 759 LIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 759 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
-++-..+.++|++|+..|.++++.. +.|.+.|..=+.+|.+.|.++.|++-.+..+. +.|. ..+|..|+.+|...|
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 3566778888999999999998863 34677788888889999999999999998888 6787 578888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHH
Q 048794 838 RVDDALHYFEELKLNGLDADTISY-NFMINGLGRSGRIE---EALSLFDEMKKRGISPDLY 894 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~ 894 (967)
++++|++.|+++++ +.|+-.+| ..|-.+--+.++.. .+..-.+.....|..|+..
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 99999999999887 46655444 34444433444333 4444444444445545553
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=6.5e-05 Score=81.70 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHH--HhccC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 048794 785 KPNCVIYNILING--FGKTG---DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV--------GRVDDALHYFEELK 850 (967)
Q Consensus 785 ~~~~~~~~~l~~~--~~~~~---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 850 (967)
+.+...|.....+ +...+ +...|+.+|+++++ ..|+ ..++..++.++... ++...+.+...++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4566666666555 33322 36788888888888 5777 35555555544332 12344555555554
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 851 LNG-LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 851 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
... .+.++.++..++-.....|++++|...++++++ +.|+...|..++.++...|+.++|+..+++++.++|.+|++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 421 233567788888888888999999999999997 45778889999999999999999999999999999999985
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.13 E-value=0.011 Score=58.47 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 699 VEELLKLYEEMSFRGCKPNTI-SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
...|.+.-.+..+. .||.. .......++.+.|+..++-.+++.+.+..++|+. ...|....--+.++.-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~gdta~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARSGDTALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcCCCcHHHHHH
Confidence 34444444444443 33332 2222334455556666666666666655444432 122222222223333333
Q ss_pred HHHHC-CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 048794 778 EMLDY-GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMV-GRVDDALHYFEELKLN 852 (967)
Q Consensus 778 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 852 (967)
++.+. ..+| +..+....+..-...|++..|..--+.... ..|....|..|+++-... |+..++.+++-+.+..
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33211 0122 333444455555555666666555555554 356666666666655444 6666666666666643
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.12 E-value=3.6e-06 Score=63.96 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHhhcCCCcCCC
Q 048794 857 DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG-MVEEARKLAGGNCFVQP 924 (967)
Q Consensus 857 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p 924 (967)
++..|..++..+...|++++|+..|+++++. .+.+..++..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777777777777777777777764 2334477777777777777 67778877777777777
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=4.7e-06 Score=66.12 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRP---DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 878 (967)
|++++|+.+++++++. .| +...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4455555555555442 22 223333445555555555555555544 2111 111223333455555555555555
Q ss_pred HHHHH
Q 048794 879 SLFDE 883 (967)
Q Consensus 879 ~~~~~ 883 (967)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00021 Score=73.89 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=50.8
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
+...++++.|+.+++++.+. .|+. ...++.++...++..+|.+++++++... +.+...+..-++.+...|+++.|
T Consensus 179 l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 33444455555555554442 2332 2224444444444445555555544321 22333444444444455555555
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 878 LSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
..+.+++.+. .|.+...|..|+.+|...|++++|.-.++
T Consensus 254 L~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 254 LEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5555555432 12222455555555555555555554444
No 162
>PF12854 PPR_1: PPR repeat
Probab=98.11 E-value=4.7e-06 Score=51.57 Aligned_cols=32 Identities=63% Similarity=1.123 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 152 GCGPDVVTYTVLIDALCTAGRLDQAKEIFLKM 183 (967)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 183 (967)
|+.||..+|+.+|.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555544
No 163
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.06 E-value=0.00078 Score=58.86 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=70.7
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD---LKSYS 827 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~ 827 (967)
|+......++.+....|++.+|...|++...--+.-|......++.+....++...|..+++++.+. .|. .....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 4444445555566666666666666666554333344555555555555556666666666665552 222 22344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
.++++|...|++..|..-|+.+++. -|++......+..+.++|+.++|..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4556666666666666666665552 455555555555666666555554444433
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.05 E-value=0.00078 Score=58.85 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 048794 785 KPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISY 861 (967)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 861 (967)
.|+......|+....+.|++.+|...|++.+.--+..|......++.+.+..+++.+|...+++..+.+ | ++...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 567778888999999999999999999998874334456788899999999999999999999988743 3 44556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 862 NFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
..++.+|...|++.+|...++.+... -|++.....++..+.++|+..+|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77899999999999999999999874 567766667788888999877776655433
No 165
>PF12854 PPR_1: PPR repeat
Probab=98.04 E-value=7.2e-06 Score=50.75 Aligned_cols=31 Identities=48% Similarity=0.901 Sum_probs=14.3
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 223 YAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.02 E-value=0.00015 Score=62.72 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=45.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLD--ADTISYNFM 864 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 864 (967)
+..++..+.+.|++++|+..|++++.. .|+ ...+..++.++.+.|++++|...++.++..... .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344444455555555555555555442 222 234444555555555555555555555432101 113344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048794 865 INGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+.++...|++++|.+.++++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 5555555555555555555554
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.99 E-value=7.3e-06 Score=62.04 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=48.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
...|++++|++.++++... .|.+..++..++.++.+.|++++|...+++++..+|+++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 4678888888888888864 45566888888888888888888888888888888888765
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.98 E-value=0.00018 Score=75.11 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 048794 757 GPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCM 835 (967)
Q Consensus 757 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 835 (967)
...+..+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..++++++ ..|+ ...+..++.+|..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHH
Confidence 345677888899999999999999874 33667899999999999999999999999998 4665 6788899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 836 VGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
.|++++|+..|++++..+ +.+......+
T Consensus 83 lg~~~eA~~~~~~al~l~-P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLA-PGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999853 2344444443
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=1.6e-05 Score=63.02 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 843 (967)
.|+++.|+.+++++.+..+. ++...+..++.+|.+.|++++|+.++++ .+ ..|. ......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999999999886331 2445677789999999999999999988 43 3444 466667799999999999999
Q ss_pred HHHHHH
Q 048794 844 HYFEEL 849 (967)
Q Consensus 844 ~~~~~~ 849 (967)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998864
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.0002 Score=74.12 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=87.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMV 836 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 836 (967)
.++..+...++++.|+.+++++.+. .|+ ....++.++...++-.+|++++.+.++. .| +...+..-+..|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 3455566677788888888888775 344 3444677777777778888888888764 44 355666667778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 837 GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 837 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
++++.|+.+.++++... +.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888742 3356678888888888888888888877765
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.98 E-value=0.00014 Score=67.20 Aligned_cols=102 Identities=15% Similarity=0.051 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
.+..++.++...|++++|+..|++++.....+ ...++..++.++...|++++|+..+++++.. .+.....+..++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHH
Confidence 44445555555555555555555554321111 1224455555555555555555555555532 12222444444444
Q ss_pred HH-------hcCCHH-------HHHHhhcCCCcCCCCcc
Q 048794 903 LG-------RAGMVE-------EARKLAGGNCFVQPSEF 927 (967)
Q Consensus 903 ~~-------~~g~~~-------~A~~~~~~~l~~~p~~~ 927 (967)
+. ..|+++ +|..++++++..+|++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 44 444433 44444444555555443
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.0003 Score=58.95 Aligned_cols=93 Identities=25% Similarity=0.252 Sum_probs=50.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMIN 866 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~ 866 (967)
...+.++-..|+.++|+.+|++.+..|..+. ...+..++..+...|++++|..++++..... +. +......++.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHH
Confidence 3455555666666666666666666554433 2345556666666666666666666655421 11 1222233444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~ 885 (967)
++...|+.++|++.+-..+
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5666666666666655544
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00015 Score=59.76 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
+..++..+...|++++|+..++++.+. .|+ ...+..++.++...|++++|.+.++++.... +.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 444555555666666666666666553 333 3455566666666666666666666666542 223345556666666
Q ss_pred hcCCHHHHHHHHHHHH
Q 048794 870 RSGRIEEALSLFDEMK 885 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~ 885 (967)
..|++++|...+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 80 KLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 6666666666666655
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.90 E-value=0.00027 Score=59.26 Aligned_cols=95 Identities=21% Similarity=0.187 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD--TISYNFMINGLGRSGRIEEALSLFDEMKKRGISP---DLYTYNSL 899 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 899 (967)
..+.++.++-..|+.++|+.+|++++..|+... ...+..++.++...|++++|..++++.... .|. +.....-+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHH
Confidence 467788999999999999999999998776654 457778999999999999999999999853 333 23445566
Q ss_pred HHHHHhcCCHHHHHHhhcCCC
Q 048794 900 ILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 900 ~~~~~~~g~~~~A~~~~~~~l 920 (967)
+.++...|+.++|..++-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 778899999999999987665
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00054 Score=63.49 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=76.4
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048794 753 PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL 829 (967)
Q Consensus 753 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 829 (967)
...+..++..+...|++++|+..|+++++....+. ...+..++.++...|++++|+..++++++ ..|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 34678888999999999999999999987533322 35889999999999999999999999998 4665 5778888
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~ 849 (967)
+.++...|+...+...+..+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH
Confidence 99999988866655544443
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00054 Score=65.92 Aligned_cols=118 Identities=13% Similarity=0.130 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC---CHHHHHHH
Q 048794 770 EEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG---RVDDALHY 845 (967)
Q Consensus 770 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~ 845 (967)
+....-++.-+..+ +.|...|..|+.+|...|++..|...|.+..+ +.|+ ...+..++.++..+. ...++..+
T Consensus 139 ~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 33344445445543 33677888888888888888888888888877 3444 456666776665432 25577888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048794 846 FEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD 892 (967)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 892 (967)
+++++..+ +.+..+...|+..+...|++.+|...++.|++. .+|+
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~ 260 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD 260 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC
Confidence 88888754 335667777788888888888888888888864 4444
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=0.00015 Score=71.02 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=50.7
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcC
Q 048794 799 GKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNG--LDADTISYNFMINGLGRSG 872 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 872 (967)
.+.|++++|+..|++.++. .|+ ..+++.++.+|...|++++|...|+++++.. .+..+.++..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4456666666666666663 343 2456666666666666666666666666421 1113445555666666666
Q ss_pred CHHHHHHHHHHHHH
Q 048794 873 RIEEALSLFDEMKK 886 (967)
Q Consensus 873 ~~~~A~~~~~~~~~ 886 (967)
++++|...|+++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666664
No 178
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.79 E-value=0.055 Score=54.81 Aligned_cols=242 Identities=14% Similarity=0.114 Sum_probs=159.3
Q ss_pred HHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcC
Q 048794 528 WFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
-++++...-.+-.+..|.....-+...++-+.|+.... .|
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~----------------------------------------rg 328 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE----------------------------------------RG 328 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH----------------------------------------hc
Confidence 44556666667777777777777777777777766654 45
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCcCHh
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL---EVHATEMGLDLFTTMKNAGCAPDIS 684 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~ 684 (967)
.+..+++...+...|.-.++.+....+|++++.... .-..++..-. ..|+++.-.+++-+-. ..=..
T Consensus 329 ~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~------r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~ 398 (660)
T COG5107 329 IEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK------RKYSMGESESASKVDNNFEYSKELLLKRI----NKLTF 398 (660)
T ss_pred ccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHH------HHHhhhhhhhhccccCCccccHHHHHHHH----hhhhh
Confidence 566667777788888889999999999988854210 0011111111 1222322222111111 12345
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHH
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRG-CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGL 763 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 763 (967)
+|...++...+..-.+.|..+|-++.+.+ ..++.....+.+. +..+|+...|..+|+--+.. ++.+...-......+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 66677777777777899999999998876 3444455556555 45578889999999877665 333443344556677
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLK 824 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 824 (967)
...++-+.|..+|+...+. +..+ ...|..++..-.+-|+...+..+-+++.+ +.|...
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen 536 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQEN 536 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHh
Confidence 8889999999999977653 2223 45888899888899999999999999887 466643
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.0073 Score=59.05 Aligned_cols=70 Identities=11% Similarity=-0.048 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHH---HhHHHHHHhcCChhHHHHHHHHHHhhcCCCcc
Q 048794 507 VLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITL---CTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAE 576 (967)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 576 (967)
....-..+..+...|++++|++.|+++....|.++... ..++.++.+.++++.|+..+++.+...|.++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 33333445556677888888888888887766665443 55666677777777777777776666554443
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.76 E-value=0.0031 Score=61.59 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=43.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS---HNIVISGLVKSNSIDKAMDLFYNLVSG 747 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 747 (967)
+...+...+..+...|++++|+..|+++....+.+ ..+ ...++.++.+.+++++|...+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44555566667777888888888888887764222 222 245566677777777777777777776
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.096 Score=56.11 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=126.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHhcCChHHHHHHHHHHHhCCC
Q 048794 119 RPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLI----------DALCTAGRLDQAKEIFLKMKASSH 188 (967)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~ 188 (967)
.|.+..|..+.......-.++-|...|-+.... +....-..|- ....--|++++|.++|-++-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 578888988888777777788888877665542 2221111111 11223588999999988875432
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048794 189 QPDQVTYITLLDKFSDCGNIEVVKEFWSQMVAD-GYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNT 267 (967)
Q Consensus 189 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (967)
..+..+.+.||+-...++++.--.. .-..-..+++.+...+.....|++|.+.+...... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3455667788888777766431110 00112457788888888888888888888765432 23
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 048794 268 LICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGR 347 (967)
Q Consensus 268 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 347 (967)
.+.++.+...+++...+... .+.+......+..++...|.-+.|.+.+-+.-. | ...+..+...++
T Consensus 828 ~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 44555555555554444333 244555666777778788877777776644221 1 234556677777
Q ss_pred HHHHHHHHHHHH
Q 048794 348 IGEAKTIFNGLK 359 (967)
Q Consensus 348 ~~~a~~~~~~~~ 359 (967)
+.+|.++-+...
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 777777665543
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=0.00012 Score=55.39 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG-RVDDALHYFEELKL 851 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 851 (967)
..+|..++..+...|++++|+..|+++++ ..|+ ...+..++.++...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34555555555555556666666655555 3444 345555555555555 45555555555554
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.0031 Score=68.95 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 770 EEAKKLFEEMLDYG-CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 770 ~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
..+.+..+++.... .+.+..+|..++..+...|++++|...+++++. ..|+...|..++.++...|+.++|.+.|++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444443321 123445677777666677888888888888887 457777788888888888888888888888
Q ss_pred HHHCCCCCCHHHH
Q 048794 849 LKLNGLDADTISY 861 (967)
Q Consensus 849 ~~~~~~~~~~~~~ 861 (967)
+... +|...+|
T Consensus 479 A~~L--~P~~pt~ 489 (517)
T PRK10153 479 AFNL--RPGENTL 489 (517)
T ss_pred HHhc--CCCCchH
Confidence 8764 4544444
No 184
>PRK11906 transcriptional regulator; Provisional
Probab=97.65 E-value=0.0005 Score=70.59 Aligned_cols=148 Identities=19% Similarity=0.156 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 804 VETACELFKQMIKG-GIRPD-LKSYSVLVDCLCMV---------GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 804 ~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
.+.|+.+|.++++. ..+|+ ...|..++.++... ....+|.++..++++.+ +.|+.+...++.++...|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45566666666621 24555 34555555544321 12345666666666654 446666666777767777
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-c-cce-eeeccCCCcccccch
Q 048794 873 RIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-S-ELQ-VIYAENPRATSLSHK 948 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~-~l~-~~~~~~g~~~~~~~~ 948 (967)
+++.|...++++.. +.||. .+|...++.+...|+.++|.+.++++++++|.--.+ + .+. ..|... ..+++.+-
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 77777777777764 44443 666677777777777777777777777777776665 2 222 234433 24444554
Q ss_pred hhhhhcc
Q 048794 949 HCEYLAS 955 (967)
Q Consensus 949 ~~~~~~~ 955 (967)
++.+..+
T Consensus 430 ~~~~~~~ 436 (458)
T PRK11906 430 YYKETES 436 (458)
T ss_pred Hhhcccc
Confidence 4444433
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.62 E-value=6.9e-05 Score=57.62 Aligned_cols=64 Identities=17% Similarity=0.008 Sum_probs=41.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 865 INGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..+|.+.+++++|.++++.++.. .|.+...+...+.++...|++++|...++++++.+|+++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34566667777777777776653 23334666666777777777777777777777777766654
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.59 E-value=0.0043 Score=63.10 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYG---CKPNCVIYNILINGFGK---TGDVETACELFKQMIKGGIRPDLKSYSVL 829 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 829 (967)
...+.-+|....+++..+++.+.+.... +.....+-...+.++.+ .|+.++|++++..++.....++..++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3445556777778888888887776531 11122234445556666 77888888888886555455667777777
Q ss_pred HHHHHh----c-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HHHH-HcCC-CC
Q 048794 830 VDCLCM----V-----GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR-IE---EALSLF---DEMK-KRGI-SP 891 (967)
Q Consensus 830 ~~~~~~----~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-~~~~-~~ 891 (967)
|++|.. . ...++|+..|.+.-+. +|+...=.+++-.+...|. ++ +..++. ..+. +.|. .+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 777632 1 1267788888887753 3433222223333444442 11 222222 1111 2232 23
Q ss_pred CH--HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 892 DL--YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 892 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.. ..+..++.+..-.|++++|++.+++++++.|+.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 33 344578888888999999999999999999988874
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.014 Score=54.43 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=78.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----CCCCCHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG-----GIRPDLKSYSVL 829 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l 829 (967)
+.+.++.++...|.+.-....+.+..+...+.++.....++.+-.+.|+.+.|...|++..+. +...+..+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445556666666666666666666666554555666666666666667777676666655442 222223334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+.++.-++++.+|...+.++...+ +.++...+.-+-++.-.|+..+|++.++.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555556666777777777766543 34555555555555566777777777777764
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.59 E-value=0.00029 Score=52.55 Aligned_cols=56 Identities=32% Similarity=0.488 Sum_probs=30.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 794 LINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
++..+...|++++|++.|+++++. .|+ ...+..++.++...|++++|..+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555553 343 34555555555555555555555555554
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.58 E-value=0.011 Score=56.43 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDL---YTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 913 (967)
.++..|.+.|.+..|..-++.+++. .|... ..+..++.++.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3667777888888888888877754 33322 45566777777777766443
No 190
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.57 E-value=0.064 Score=53.74 Aligned_cols=223 Identities=23% Similarity=0.203 Sum_probs=123.2
Q ss_pred CChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhcHHHHHHHHHcCCCHHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGCKP-NTISHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSKSGRLEEAKK 774 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 774 (967)
+....+...+.......... ...........+...+....+...+...... ........+...+..+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444332110 1334455555556666666666666555542 123333445555566666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 775 LFEEMLDYGCKPNCVIYNILIN-GFGKTGDVETACELFKQMIKGGIRP----DLKSYSVLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
.+.........+ ......... ++...|++++|...+++... ..| ....+......+...++++++...+.++
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 666666542221 122222222 56666777777777777655 233 1233444444456666777777777776
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 850 KLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 850 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
.... +. ....+..++..+...|+++.|...+...... .|+ ...+..++..+...|+++++...+.+++..+|.
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6542 22 3455666667777777777777777777642 233 345555555555556677777777777777765
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0017 Score=60.21 Aligned_cols=137 Identities=16% Similarity=0.130 Sum_probs=77.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN-----GLDADTISYNFMIN 866 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~ 866 (967)
+.++.++...|.+.-.+.++.++++.+.+-+......|+++-.+.|+.+.|..+++.+.+. ++.....+..+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4455555566666666777777666432223455566666667777777777777654321 11222223333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.-.+++.+|...+.+.... -+-++...++-+-++.-.|+..+|++..+.+....|.....
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred heecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 555555666666666666642 11223334455555555667777777777777666666654
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=0.00065 Score=64.56 Aligned_cols=99 Identities=25% Similarity=0.316 Sum_probs=69.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLN-GLDA-DTISYNF 863 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~ 863 (967)
.|+ .+.-+...|++.+|...|...++. -|+ ..++++|+.++...|++++|...|..+.+. +-.| .++.+..
T Consensus 144 ~Y~-~A~~~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYN-AALDLYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344 344455677788888888888874 333 356778888888888888888888887752 1112 4577778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048794 864 MINGLGRSGRIEEALSLFDEMKKRGISPD 892 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 892 (967)
|+.+..+.|+.++|...|+++.+. .|..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~-YP~t 248 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR-YPGT 248 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH-CCCC
Confidence 888888888888888888888764 4433
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.019 Score=54.77 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 048794 650 MYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFR 712 (967)
Q Consensus 650 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 712 (967)
.+...+..+...|++.+|+..|+.+....+.. ...+...++.++.+.|++++|+..+++.+..
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455566666777777776666652211 2334455666666677777777777766655
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.48 E-value=0.0004 Score=60.55 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=69.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
....+.-+...|++++|..+|.-+.- ..| +..-+..|+.++...|++++|+..|..+...+ ..|+..+...+.+|.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 33444445688899999999888766 344 35567788888888889999999988877543 234444666888888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048794 870 RSGRIEEALSLFDEMKK 886 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~ 886 (967)
..|+.+.|...|..+.+
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999888885
No 195
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0036 Score=62.81 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILN 902 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~ 902 (967)
.++.+++-++.+.+++.+|++.-.+++..+ +++..++..-+.++...|+++.|+..|+++++ +.|++ .+-..++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 356677777788888888888888887765 55777777778888888888888888888875 45554 555566655
Q ss_pred HHhcCCHHH-HHHhhcCCCcCCCCc
Q 048794 903 LGRAGMVEE-ARKLAGGNCFVQPSE 926 (967)
Q Consensus 903 ~~~~g~~~~-A~~~~~~~l~~~p~~ 926 (967)
-.+...+.+ ..++|.+.+..-++.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 555544443 366777666555544
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0024 Score=62.72 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=42.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcC
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVG 837 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 837 (967)
.+.|++++|+..|+.+++..+... ..++..++.+|...|++++|+..|+++++. .|+ ..++..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 344555555555555555421110 124555555555555555555555555542 222 334444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 048794 838 RVDDALHYFEELKL 851 (967)
Q Consensus 838 ~~~~A~~~~~~~~~ 851 (967)
++++|...|+++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
No 197
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.35 E-value=0.23 Score=50.78 Aligned_cols=121 Identities=19% Similarity=0.242 Sum_probs=69.8
Q ss_pred HHHcCC-hhHHHHHHHHHHHCCCCCChhhHHHHHH----HH---HhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHH
Q 048794 377 YSKVGQ-VDEAVTLLSEMVENGCEPDVIVMNTLID----TL---YKADRVDEAWEMFCRMKDMKLAP----TVVTYNTLL 444 (967)
Q Consensus 377 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~---~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~ 444 (967)
+-+.|. -+.|..+++.+.+-. +-|..+-+.+.. .| .....+..-..+-+-+.+.|++| +...-|.+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334454 677777777777642 233333333222 12 12233444444444455566654 233444444
Q ss_pred HH--HHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 048794 445 SG--LGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTP 500 (967)
Q Consensus 445 ~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (967)
++ +...|++.++.-.-.-+.+ +.|++.++..+.-+.....++++|..++..+..
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 43 3467888877765554544 567888888887777778888888888877643
No 198
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.35 E-value=0.03 Score=56.17 Aligned_cols=225 Identities=21% Similarity=0.106 Sum_probs=163.6
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFS-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY-GCKPNCVIYNILINGFGKTGDVETAC 808 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 808 (967)
.+....+...+......... ............+...+++..+...+...... ........+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34556666666666655322 13456777788899999999999999988752 12445567888888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 809 ELFKQMIKGGIRPDLKSYSVLVD-CLCMVGRVDDALHYFEELKLNGL--DADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 809 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..+.........+ ......... ++...|++++|...++++..... ......+......+...++++.|...+..+.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999998843222 223333444 78999999999999999976321 1234455556666788999999999999999
Q ss_pred HcCCCC-CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhcccc
Q 048794 886 KRGISP-DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASSC 957 (967)
Q Consensus 886 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 957 (967)
.. .+. ....+..++..+...+++++|...+.+++...|+.... ..++..+...|+++++.....+.+..++
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 64 344 36788899999999999999999999999999994443 5677777766667776664444444443
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.35 E-value=0.00056 Score=51.59 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..|++++|+++|++++... +.+..++..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555432 2244444455555555555555555555554
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0049 Score=64.28 Aligned_cols=124 Identities=16% Similarity=0.143 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048794 362 GFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN--GCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVT 439 (967)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 439 (967)
+.+.+......++..+....+++.+..++-..... ....-..+..++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34566667777777777777888888888887765 2223344667889999999999999999888888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 048794 440 YNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKN 485 (967)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (967)
++.++..+.+.|++..|.+++..|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888777666666666555555544
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.38 Score=51.81 Aligned_cols=207 Identities=11% Similarity=0.077 Sum_probs=117.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 399 EPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDM-KLAP--------TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCF 469 (967)
Q Consensus 399 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 469 (967)
.|.+..|..+.......-.++.|...|-+..+. |++. +...-.+=+.+| -|++++|.+++-+|...+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 466677777776665555666666666554331 2110 111112222233 378899998887775542
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHH
Q 048794 470 PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN-CWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLL 548 (967)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 548 (967)
..+..+.+.|++-...++++.--.-. ...-...++.++..+.....|++|.++|..... ....+
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ 829 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQI 829 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHH
Confidence 23556677888887777776532211 111245778888888888889999988876543 12234
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccH
Q 048794 549 PGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKA 628 (967)
Q Consensus 549 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 628 (967)
.++....++++-..+. ...|.+...+-.+++++.+.|--
T Consensus 830 ecly~le~f~~LE~la-----------------------------------------~~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLA-----------------------------------------RTLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHhhhhHHHHH-----------------------------------------HhcCcccchHHHHHHHHHhhchH
Confidence 4444444444322221 22355556666777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048794 629 LAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMK 675 (967)
Q Consensus 629 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 675 (967)
++|.+.|-+.- .+ ..-...|...+++.+|.++-++..
T Consensus 869 ~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 869 DQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77777665541 11 122344556666666666555443
No 202
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.016 Score=50.87 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 837 (967)
..+--+...|++++|..+|.-+.-.++ -+..-|..|+.++...+++++|+..|..+...+ .-|.......+.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 344445667777777777777765432 255566777777777777777777777766532 223445666777777777
Q ss_pred CHHHHHHHHHHHHH
Q 048794 838 RVDDALHYFEELKL 851 (967)
Q Consensus 838 ~~~~A~~~~~~~~~ 851 (967)
+.+.|...|+.+++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777777776
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.004 Score=64.95 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 84 KPSLKTYSALMVAAGKRRNIKTVMNLLEEMERL--GLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYT 161 (967)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (967)
+.+......+++.+...-+.+.+..++-..... ....-..+..++++.|...|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344444444444444444444454444444432 111112233344555555555555555554444445555555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048794 162 VLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLD 200 (967)
Q Consensus 162 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 200 (967)
.|+..+.+.|++..|.++...|...+...+..|+...+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 555555555555555555444443333333333333333
No 204
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00037 Score=69.59 Aligned_cols=92 Identities=12% Similarity=-0.028 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeec
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYA 937 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~ 937 (967)
.++++|+-++.+.+++.+|+....+++.. -++|.-.++.-+.++...|+++.|+..|+++++++|+|-.+ ..|+.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLEL-DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45778999999999999999999999975 35566888999999999999999999999999999999887 57777777
Q ss_pred cCCCcccccchhhh
Q 048794 938 ENPRATSLSHKHCE 951 (967)
Q Consensus 938 ~~g~~~~~~~~~~~ 951 (967)
+.-++.+.+++.+.
T Consensus 337 k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 337 KIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555554
No 205
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.25 E-value=0.00057 Score=43.13 Aligned_cols=33 Identities=48% Similarity=0.873 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 048794 159 TYTVLIDALCTAGRLDQAKEIFLKMKASSHQPD 191 (967)
Q Consensus 159 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 191 (967)
+|+.++.+|++.|++++|.++|.+|...|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666667777777777777777666666665
No 206
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0018 Score=65.09 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=96.4
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK-TGDVETACELFKQMIKGGIRPDLKSYSVLVDCL 833 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 833 (967)
+|..++....+.+..+.|..+|+++.+.+ ..+..+|...+.+... .++.+.|..+|+..++. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56677788888888999999999998542 3355677777777444 56777799999998885 344567778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 834 CMVGRVDDALHYFEELKLNGLDAD---TISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
...|+.+.|..+|++++.. +.++ ...|..+++.-.+.|+.+....+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999998864 3332 357888888888899999999998888864
No 207
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.21 E-value=0.43 Score=51.06 Aligned_cols=173 Identities=16% Similarity=0.059 Sum_probs=102.6
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCL 833 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 833 (967)
.+|...++.-...|+++.+.-.|+++.-. +..=...|...+......|+.+-|..++.+..+--.+........-+...
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 45666667777788888888888887642 11122366666666666678777777777766532222233333334455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCH--HhHHHHHHHHH-hc
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADT-ISYNFMINGLGRSGRIEEAL---SLFDEMKKRGISPDL--YTYNSLILNLG-RA 906 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~ 906 (967)
...|+++.|..+++.+.+. . |.. .+-..-+....+.|..+.+. +++.........++. ..+...+.... -.
T Consensus 377 e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 6677888888888887764 2 433 23333455567777777777 444444321111111 12223333322 34
Q ss_pred CCHHHHHHhhcCCCcCCCCcccc
Q 048794 907 GMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 907 g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.+.|...+.++.+..|++...
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHH
Confidence 67888888888888888888775
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.21 E-value=0.00013 Score=48.88 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 894 YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
.++..++..+...|++++|++.++++++.+|+|+.+ ..||
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 345566677777777777777777777777777665 3444
No 209
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.21 E-value=0.00056 Score=42.78 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048794 159 TYTVLIDALCTAGRLDQAKEIFLKMKASSHQP 190 (967)
Q Consensus 159 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 190 (967)
+|+.++.+|.+.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.015 Score=58.55 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 048794 404 VMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSG-LGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCL 482 (967)
Q Consensus 404 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (967)
+|..++...-+.+..+.|+.+|.++.+.+. .+...|...... +...++.+.|.++|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455566666666667777777777765432 233334333333 22346666688888777765 455667777777777
Q ss_pred HhcCCHHHHHHHHHhhccCCCCCCH----HHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCCh
Q 048794 483 CKNEEVDLAMKMLYEMTPRNCWPDV----LTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDH 541 (967)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 541 (967)
...++.+.|+.+|++.+.. .+.. .+|...+..-.+.|+.+....+.+++.+..+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 7778888888888887766 2233 4777777777788888888888888887655533
No 211
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.16 E-value=0.00077 Score=42.49 Aligned_cols=31 Identities=35% Similarity=0.681 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 048794 55 YNGFIHFILQSGFCREALAVYKRVVSEGIKP 85 (967)
Q Consensus 55 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 85 (967)
|+.++..|.+.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444444444444444333
No 212
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.15 E-value=0.06 Score=52.93 Aligned_cols=228 Identities=12% Similarity=0.060 Sum_probs=145.0
Q ss_pred HHhhccHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---cCHhhHHHHHHHHHc
Q 048794 622 FCRQKKALAAKDLFVKFTENLGVT-STLEMYNYLIHGLLEVHATEMGLDLFTTMKNA--GCA---PDISTYNLLLDGYGK 695 (967)
Q Consensus 622 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~ 695 (967)
+..+.+.++|...+.+.+.+.... .....+..+..++++.|.+++++..--..++- ..+ .--.++..+...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677776666655433222 22345666777888888888776443222211 001 112345566666766
Q ss_pred cCChHHHHHHHHHHHhCC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhcHHHHHHHHHcC
Q 048794 696 SGRVEELLKLYEEMSFRG-CKP---NTISHNIVISGLVKSNSIDKAMDLFYNLVSGG-----FSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 766 (967)
.-++.+++.+-..-.... -.+ --.....+..++...+.++.+++.|+.+...- ......++..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 677777776655544321 111 11234556777788888999999999887651 112335788899999999
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDY----GCKPNCV------IYNILINGFGKTGDVETACELFKQMIK----GGIRPD-LKSYSVLVD 831 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~----~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~ 831 (967)
.|+++|.-+..++.+. ++. |.. +...++-++...|...+|.+.-++..+ .|..|- ......+++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999998887776542 222 222 334456667788888888888887654 454443 345667899
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048794 832 CLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 832 ~~~~~g~~~~A~~~~~~~~ 850 (967)
+|...|+.+.|..-|+.+.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 9999999999999998875
No 213
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.13 E-value=0.00084 Score=41.94 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 229 TYTIFVDALCKVGNVEEAFSILDLMRGEGIL 259 (967)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 259 (967)
+|+.++.+|++.|+++.|..+|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.12 E-value=0.0081 Score=51.34 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLN-GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL----YTYN 897 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~ 897 (967)
..++.-+....+.|++++|.+.|+.+... ...+ ...+-..|+.+|.+.|++++|...+++.++. .|+. .++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHHH
Confidence 34445555555666666666666665542 1111 3445555666666666666666666666642 2221 3333
Q ss_pred HHHHHHHhcCC---------------HHHHHHhhcCCCcCCCCcccc
Q 048794 898 SLILNLGRAGM---------------VEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 898 ~l~~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..+-+.+.... ..+|..-|++++...|++..+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 33333333333 668888888888888888764
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0033 Score=48.21 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=27.2
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+|.+.+++++|++.+++++.. .|+ ...+...+.++...|++++|...++++++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555552 333 34444555555555555555555555554
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.015 Score=55.53 Aligned_cols=92 Identities=23% Similarity=0.247 Sum_probs=43.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKP--NCVIYNILINGFGKTGDVETACELFKQMIKG-GIRPD-LKSYSVLVDCLCM 835 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~ 835 (967)
+-.+.+.|++.+|...|...++..+.- ....+.+|+.++..+|++++|...|..+.+. ...|. ...+.-|+.+..+
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 333444455555555555555542110 1114455555555555555555555555542 11111 2445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 048794 836 VGRVDDALHYFEELKL 851 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~ 851 (967)
.|+.++|...|+++.+
T Consensus 228 l~~~d~A~atl~qv~k 243 (262)
T COG1729 228 LGNTDEACATLQQVIK 243 (262)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555555555554
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.06 E-value=0.0018 Score=50.40 Aligned_cols=61 Identities=30% Similarity=0.373 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKL----NGLD-A-DTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
++..++.+|...|++++|+.+|+++++ .|.. | ...++..++.++...|++++|+++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555556666666666555542 1100 1 12345555666666666666666666554
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0018 Score=50.48 Aligned_cols=62 Identities=21% Similarity=0.446 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKG--GIR---PD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+++.++.+|...|++++|+..|+++++. ... |+ ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777777777888888877777641 011 22 35667778888888888888888877764
No 219
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.059 Score=49.60 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=47.6
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh------
Q 048794 828 VLVDCLCMV-GRVDDALHYFEELKLN--GL---DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT------ 895 (967)
Q Consensus 828 ~l~~~~~~~-g~~~~A~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------ 895 (967)
.++.+|... .++++|+..|+.+-+. +- .....++...+..-...|++.+|+++|+++....+..+---
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444433 4555566665555431 10 11123344444445566666666666666654323322111
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+..-+-++....+.-.+...+++..+++|.-...
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 1122222223355555666666666666665553
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.00 E-value=0.52 Score=48.18 Aligned_cols=137 Identities=13% Similarity=0.172 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHH-HHHHHH
Q 048794 403 IVMNTLIDTLYKADRVDEAWEMFCRMKDMK-LAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVT-FNTLLH 480 (967)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 480 (967)
.+|...+....+..-.+.|+.+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--... .||... ....+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345556666667777888999998888877 5667788888887665 58888888888775553 344443 344556
Q ss_pred HHHhcCCHHHHHHHHHhhccCCC-CCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChh
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNC-WPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHI 542 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 542 (967)
-+...++-+.|+.+|+...++-- ..-..+|..++..-..-|+...+..+=+++....|....
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 66778888889999886655410 012456777777777788888888888888776665443
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.99 E-value=0.028 Score=55.14 Aligned_cols=286 Identities=16% Similarity=0.097 Sum_probs=172.1
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCC---hhhHHHHHHHHHhc
Q 048794 659 LEVHATEMGLDLFTTMKNAG--CAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRG--CKPN---TISHNIVISGLVKS 731 (967)
Q Consensus 659 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~ 731 (967)
....+.++|+..+...+.+- ...-..++..+..+..+.|++++++..--..+... ...+ ..++..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888777776541 01122345556667788888888775532221110 0111 12445555556666
Q ss_pred CCHHHHHHHHHHHHhC-CCCC---ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHhccC
Q 048794 732 NSIDKAMDLFYNLVSG-GFSP---TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK---P--NCVIYNILINGFGKTG 802 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~ 802 (967)
.++.+++.+-...... |..+ -......++.++...+.++.+++.|+.+.+.... | ...++..++..+.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6666666665544443 2222 1134556788888999999999999998763211 1 2337899999999999
Q ss_pred CHHHHHHHHHHHHhC--CCC-CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHH
Q 048794 803 DVETACELFKQMIKG--GIR-PD------LKSYSVLVDCLCMVGRVDDALHYFEELK----LNGLDA-DTISYNFMINGL 868 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~--~~~-p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~ 868 (967)
++++|+-+..++.+. .+. .| ....+.|+-++...|..-.|.+.-+++. ..|-.+ -......++++|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999888887651 112 12 1234677778888898888888877765 344233 233556789999
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCC---HHhHHHHHHHHHhcCCH-----HHHHHhhcCCCcCCCCc----ccc--c-c
Q 048794 869 GRSGRIEEALSLFDEMKKR--GISPD---LYTYNSLILNLGRAGMV-----EEARKLAGGNCFVQPSE----FVS--S-E 931 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~-----~~A~~~~~~~l~~~p~~----~~~--~-~ 931 (967)
...|+.+.|..-|+++... ++... ..++...+..+....-. =+|+++-++++++...- .+. + .
T Consensus 257 R~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcr 336 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCR 336 (518)
T ss_pred HhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999988621 11111 12333333333221111 23555555555443222 222 2 6
Q ss_pred ceeeeccCCCccc
Q 048794 932 LQVIYAENPRATS 944 (967)
Q Consensus 932 l~~~~~~~g~~~~ 944 (967)
++.+|-..|.-++
T Consensus 337 la~iYrs~gl~d~ 349 (518)
T KOG1941|consen 337 LASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHhccchhH
Confidence 8899988888777
No 222
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.93 E-value=0.014 Score=46.98 Aligned_cols=72 Identities=19% Similarity=0.374 Sum_probs=33.1
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 048794 61 FILQSGFCREALAVYKRVVSEGI-KPSLKTYSALMVAAGKRR--------NIKTVMNLLEEMERLGLRPNVYTFTICIRI 131 (967)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (967)
-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-.++.+|++|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33333444444555555544444 444455554444433221 123344455555544555555555554444
Q ss_pred H
Q 048794 132 L 132 (967)
Q Consensus 132 ~ 132 (967)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 4
No 223
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.87 E-value=0.68 Score=47.57 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=36.9
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
+..+|++.++.-.-.=+.+ +.|+..++..+|-++...+++++|..+++. ++|+..+++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~d 529 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRD 529 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHH
Confidence 3456777776654444444 667777777777777777777777777665 355554444
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=96.87 E-value=0.064 Score=55.71 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhC-CC-CCChhcHHHHHHHHHcC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048794 734 IDKAMDLFYNLVSG-GF-SPTPCTYGPLIDGLSKS---------GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG 802 (967)
Q Consensus 734 ~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (967)
.+.|+.+|.++++. .. +.....|..++.++... .+..+|.+.-+++.+.+ +.|..+...++.+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45566667776632 11 22234555555544332 22345555666666654 235566666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 048794 803 DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADT---ISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 878 (967)
+++.|+..|+++.. ..|| ..+++..+..+...|+.++|.+.++++++. +|.. ......++.|+.. ..++|+
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 66667777776666 4565 456666666666667777777776666653 3422 2222333344433 345566
Q ss_pred HHHHH
Q 048794 879 SLFDE 883 (967)
Q Consensus 879 ~~~~~ 883 (967)
++|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 55543
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.27 Score=45.47 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=9.0
Q ss_pred HcCCCHHHHHHHHHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~ 781 (967)
...++++.|+++|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.83 E-value=6.4e-05 Score=46.48 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=17.8
Q ss_pred hcCCCcCCCCcccc-ccceeeeccCCCccccc
Q 048794 916 AGGNCFVQPSEFVS-SELQVIYAENPRATSLS 946 (967)
Q Consensus 916 ~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~ 946 (967)
++++++++|+|+.+ +.||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555566666665 45666666666655543
No 227
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.83 E-value=0.00061 Score=42.59 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 894 YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
.++..++.++...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888888888888888888888888875
No 228
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.75 E-value=0.023 Score=45.75 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=32.9
Q ss_pred HhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048794 28 SLKGGLRRASFALEKMRAAGF-VLNAYSYNGFIHFILQSG--------FCREALAVYKRVVSEGIKPSLKTYSALMVAA 97 (967)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (967)
...+++...-.+|..+++.|+ .|+..+|+.++....+.. +.-+++.+|+.|...+++|+..+|+.++..+
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 333555555555555555554 445555554444443321 1223444555555545555555555555444
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.73 E-value=0.38 Score=49.43 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRG---CKPNTISHNIVISGLVK---SNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
.++-.|....+++.-+.+++.+.... +..........+.++.+ .|+.++|++++..++.....+++.++..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666677777777777666531 00111122233334444 5556666666555444433444445555544
Q ss_pred HH
Q 048794 762 GL 763 (967)
Q Consensus 762 ~~ 763 (967)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.29 Score=45.64 Aligned_cols=128 Identities=12% Similarity=0.041 Sum_probs=73.9
Q ss_pred hccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHH
Q 048794 799 GKTGDVETACELFKQMIKG--GIRPD---LKSYSVLVDCLCMVGRVDDALHYFEELK----LNGLDAD-TISYNFMINGL 868 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~-~~~~~~l~~~~ 868 (967)
....++++|+++|++...- .-.-+ ...+....+++.+..++++|-..+.+-. ...--++ -..+...+-++
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 3556778888888876541 00111 2334455677788888888776666532 1111122 23455555566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPD---LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
....++..|..+++...+.+-..+ ..+...|+.. +..|+.+++.+++.--+-.+=+|-
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~sp~~r~MDne 261 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLSSPTVRNMDNE 261 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHcChHhhhhhHH
Confidence 677789999999988664322222 2444455443 356788888888875544333333
No 231
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.62 E-value=0.0026 Score=38.64 Aligned_cols=28 Identities=36% Similarity=0.740 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 048794 159 TYTVLIDALCTAGRLDQAKEIFLKMKAS 186 (967)
Q Consensus 159 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 186 (967)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3455555555555555555555555443
No 232
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.61 E-value=0.49 Score=53.09 Aligned_cols=253 Identities=13% Similarity=0.115 Sum_probs=159.5
Q ss_pred HHhcCChHHHHHHHHHHHH-------cCCCcCHhhHHHHHHHHHccC-----ChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048794 658 LLEVHATEMGLDLFTTMKN-------AGCAPDISTYNLLLDGYGKSG-----RVEELLKLYEEMSFRGCKPNTISHNIVI 725 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (967)
+....+.+.|+.+|+.+.+ .+ ...+.+.++.+|.+.. +.+.|+.+|.++...| .|+ ....++
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~--a~~~lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPD--AQYLLG 332 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-Cch--HHHHHH
Confidence 4467789999999988876 44 3345667788887753 6677999999998876 334 334455
Q ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 726 SGLVKSN---SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 726 ~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
.++.... +...|..+|..+...|..+ ++..++.+|.. .-+.+.|..+++++.+.| .|....-......+
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHH
Confidence 5554433 5789999999999876433 34444444432 347889999999999876 22212111122223
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH-HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048794 799 GKTGDVETACELFKQMIKGGIRPD--LKSYSVLVD-CLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS 871 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~-~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 871 (967)
.. +.++.+...+..+...|.+-. ..++..... .... ..+.+.+..++.++...| +......|++.|..-
T Consensus 409 g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g 484 (552)
T KOG1550|consen 409 GV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYG 484 (552)
T ss_pred cc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeec
Confidence 33 777777777777666432221 111111111 1111 225667788888777544 556677788887544
Q ss_pred ---C-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHHHHHHhhcCCCcCCCCccc
Q 048794 872 ---G-RIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA---GMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 872 ---g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+ +++.|...|.++...+ ......++..+... ..+..|.+++.++...+.+...
T Consensus 485 ~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~ 544 (552)
T KOG1550|consen 485 LGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYL 544 (552)
T ss_pred CCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhh
Confidence 3 5999999999988543 55556676666543 1278888888888776665544
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.59 E-value=0.0051 Score=63.40 Aligned_cols=66 Identities=18% Similarity=0.070 Sum_probs=51.8
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 820 RPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD-T---ISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 820 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
.|+ ...+++++.+|...|++++|+..|+++++. +|+ . .+|.+++-+|...|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444 678888888888888888888888888874 444 2 34778888888888888888888888863
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.56 E-value=0.011 Score=61.15 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=55.9
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 048794 750 SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGDVETACELFKQMIKG 817 (967)
Q Consensus 750 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 817 (967)
+.+...+..++.+|.+.|++++|+..|+++++. .|+. .+|++++.+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677888999999999999999999999986 4443 35899999999999999999999999884
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.52 Score=50.41 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=42.0
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 834 (967)
+...++.-+.+...+.-|-++|.++-+. ..+...+...++|.+|.++-++.-+ ..|+ +|...+.-++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHhh
Confidence 3444444445555556666666655431 1244556677777777777666544 3333 3444444455
Q ss_pred hcCCHHHHHHHHH
Q 048794 835 MVGRVDDALHYFE 847 (967)
Q Consensus 835 ~~g~~~~A~~~~~ 847 (967)
...+++||.+.|.
T Consensus 816 E~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFH 828 (1081)
T ss_pred hhhhHHHHHHHHH
Confidence 5555555544443
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.53 E-value=0.042 Score=45.18 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD---TISYNFMINGLGRSG 872 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 872 (967)
+....|+.+.|++.|.+.+. +-|. ..+|++-+.++.-+|+.++|++-++++++..-+.. ...|.--+.+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45566666666666666666 3443 45666666666666666666666666665311111 223444555666666
Q ss_pred CHHHHHHHHHHHHHcC
Q 048794 873 RIEEALSLFDEMKKRG 888 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~ 888 (967)
+-+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666665544
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.53 E-value=0.0012 Score=41.14 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 894 YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
.+|..++.++...|++++|+..++++++++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 456777777777788888888888887777764
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.52 E-value=0.29 Score=46.57 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=27.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGF--SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
-.+.|++++|.+.|+.+.+..+ +-...+...++-++.+.+++++|+...++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3444555555555555544311 112234444555556666666666666665554
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.68 Score=49.58 Aligned_cols=83 Identities=19% Similarity=0.106 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 048794 436 TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIY 515 (967)
Q Consensus 436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 515 (967)
+..+...+...+.+...+.-|-++|.+|-+. ..++..+...+++.+|..+-+...+. -+.++...+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc----cccccchHHH
Confidence 3344444444445556666777777766532 34566677778888888777766554 2233444555
Q ss_pred HHhhcCcHhHHHHHHH
Q 048794 516 GLVKEQRVKDAIWFFH 531 (967)
Q Consensus 516 ~~~~~g~~~~A~~~~~ 531 (967)
.+....++++|.+.|.
T Consensus 813 wLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFH 828 (1081)
T ss_pred HhhhhhhHHHHHHHHH
Confidence 5666666666666543
No 240
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.50 E-value=0.0037 Score=37.91 Aligned_cols=27 Identities=37% Similarity=0.786 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 230 YTIFVDALCKVGNVEEAFSILDLMRGE 256 (967)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 256 (967)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.11 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.217 Sum_probs=11.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHH
Q 048794 617 PIIKLFCRQKKALAAKDLFVKF 638 (967)
Q Consensus 617 ~l~~~~~~~~~~~~a~~~~~~~ 638 (967)
..+..|...+++++|...+.+.
T Consensus 36 kAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHH
Confidence 3344555555566655555554
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.43 E-value=0.92 Score=43.35 Aligned_cols=57 Identities=19% Similarity=0.136 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV---IYNILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
.++..|.+.|.+..|..-++++++. .+.... .+..+..+|...|-.++|...-.-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3556667777777777777777665 221222 44445556666666666665544443
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.40 E-value=0.14 Score=45.80 Aligned_cols=55 Identities=27% Similarity=0.475 Sum_probs=25.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
.++..+...|++++|+..+++++. ..|. ...+..++.+|...|+..+|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444444555555555555544 2332 344444555555555555555555443
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.28 Score=47.56 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=69.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETA 807 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 807 (967)
....|++.+|...|..++... +........++.+|...|+.+.|..++..+..............-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344555666666666555542 2223345556666666666666666666654321111111111122333333343433
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC
Q 048794 808 CELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGL-DADTISYNFMINGLGRSG 872 (967)
Q Consensus 808 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 872 (967)
..+-.+.-. .| |...-..++..+...|+.++|++.+-.++..+. -.+......+++++.-.|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333332 44 455666666666777777777766666654321 113344455555555555
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.24 E-value=0.14 Score=55.76 Aligned_cols=162 Identities=19% Similarity=0.104 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV------IYNILINGFG----KTGDVETACELFKQMIKGGIRPDLKS 825 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~ 825 (967)
...++...+=.||-+.+++.+.+..+.+---.+. .|+..+..++ ...+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3444455555566666666666655421111111 2222222222 234566677777777663 565433
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHH
Q 048794 826 Y-SVLVDCLCMVGRVDDALHYFEELKLN--GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTY-NSLI 900 (967)
Q Consensus 826 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 900 (967)
| ..-++++...|+.++|++.++++... ..+. ...++.-+++.+.-.+++++|...+..+.+. ..-....| +..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 3 34466667777777777777765531 1011 2234445667777777777777777777642 12112222 2444
Q ss_pred HHHHhcCCH-------HHHHHhhcCCC
Q 048794 901 LNLGRAGMV-------EEARKLAGGNC 920 (967)
Q Consensus 901 ~~~~~~g~~-------~~A~~~~~~~l 920 (967)
.++...|+. ++|..+++++-
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 455556666 66666666554
No 246
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.21 E-value=2.3 Score=45.80 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=100.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMV 95 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 95 (967)
+...|+.|+.--.+..+...++.+++.++..-| .-...|......-.+.|..+.+..+|++-+. +++-+...|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyP-l~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYP-LCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 455677777766666777778888888886642 2445778887777888999999999999876 57778888877775
Q ss_pred HH-HccCCHHHHHHHHHHHHHc-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 96 AA-GKRRNIKTVMNLLEEMERL-GLR-PNVYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 96 ~~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
.+ ...|+.+..++.|+.+... |.. .....|..++..-..+++......+|++..+.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 54 4678888899999988765 322 24456778888888889999999999998863
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.085 Score=51.32 Aligned_cols=188 Identities=16% Similarity=0.094 Sum_probs=124.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCC
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGD 803 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 803 (967)
..-.|+..+|-..+++++.. .|.+..++.-.=++|.-.|+.+.-...+++++.. -.+|. .+...++-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34578888888888988876 4666666666678888899999989999988764 13343 333445556778999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 804 VETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
+++|.+.-++.++-+ +.|..+...++.++...|+..++.++..+-...=-.. ....|...+-.+.+.+.++.|.++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999998842 3346788889999999999999999876543210011 122344455556788899999999
Q ss_pred HHHHH-HcCCCCCHH-h---HHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 881 FDEMK-KRGISPDLY-T---YNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 881 ~~~~~-~~~~~~~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
|+.=. +. ++.+.. . +..+-.+..+.-.+.+-.++.+-+
T Consensus 270 yD~ei~k~-l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKR-LEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHH-hhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 98644 32 443332 2 122333444444455555444433
No 248
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.13 Score=45.03 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=47.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADT---ISYNFMINGLGRSGRIE 875 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 875 (967)
+.+..++|+..|..+.+.|...-+ ......+.+....|+..+|...|.++-.-...|.. .....-+..++..|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 334444455555544443322211 12223334444445555555555444321111111 11122233344555555
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 876 EALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
+...-.+.+..-+.+-....-..|+-+-++.|++..|.++|..+.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 544444444322222222333344444455555555555554443
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.16 E-value=0.14 Score=44.09 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=24.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGF--SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
..+.|++++|.+.|+.+...-+ +-...+...++.+|.+.|++++|+..+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344444444444444444311 112233444455555555555555555555544
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.09 E-value=0.18 Score=54.93 Aligned_cols=161 Identities=23% Similarity=0.221 Sum_probs=96.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhH------HHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhcHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISH------NIVISGLV----KSNSIDKAMDLFYNLVSGGFSPTPCTYG 757 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (967)
.++....-.|+-+.+++.+.+..+.+---.+.+- ...+.... ...+.+.|.+++..+...- |....-..
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl~ 271 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFLF 271 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 4555566678888888888877653211111111 11111111 2345677788888877762 33333344
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYG---CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVL-VDCL 833 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~ 833 (967)
.-+..+...|+.++|++.|+++.... .......+..++.++....+|++|...|.++.+.+ .-+...|..+ +.++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 45677777888888888888765311 01123356667777888888888888888888742 2223334333 4555
Q ss_pred HhcCCH-------HHHHHHHHHHH
Q 048794 834 CMVGRV-------DDALHYFEELK 850 (967)
Q Consensus 834 ~~~g~~-------~~A~~~~~~~~ 850 (967)
...|+. ++|.+++.++-
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 667777 77888887765
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.06 E-value=0.13 Score=42.50 Aligned_cols=93 Identities=22% Similarity=0.228 Sum_probs=68.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG-GIRPD--LKSYSVLVDCLCMV 836 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~ 836 (967)
+.+....|+++.|++.|.+.+... +.....||+-+.++.-+|+.++|+.-++++++. |-... ..+|..-+..|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 445677888888888888888753 335668888888888888888888888888874 21211 24566667788888
Q ss_pred CCHHHHHHHHHHHHHCC
Q 048794 837 GRVDDALHYFEELKLNG 853 (967)
Q Consensus 837 g~~~~A~~~~~~~~~~~ 853 (967)
|+.+.|..-|+.+.+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887765
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.06 E-value=0.017 Score=38.50 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 900 (967)
++..++.+|.+.|++++|+++|+++++. .|.+..+|..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhh
Confidence 4555666666666666666666666653 333445555554
No 253
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.00 E-value=0.096 Score=48.21 Aligned_cols=88 Identities=26% Similarity=0.417 Sum_probs=53.4
Q ss_pred cHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----------------CCCHHHHHHH
Q 048794 226 DVVTYTIFVDALCK-----VGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLR----------------LDRVEEALEV 284 (967)
Q Consensus 226 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~ 284 (967)
+..+|..++..+.+ .|..+-....+..|.+-|+..|..+|+.|+..+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 23444444445555555555555555555544432 1245667888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 048794 285 FNNMEILGVQPTAYTYILFIDYYGKSADP 313 (967)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (967)
+++|...|+-||..++..++..+++.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 88888888888888888888888776653
No 254
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.97 E-value=2.2 Score=44.41 Aligned_cols=114 Identities=15% Similarity=0.005 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHH--HHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCc
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKF--TENLGVTSTL-----EMYNYLIHGLLEVHATEMGLDLFTTMKN-------AGCAP 681 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~ 681 (967)
..-.+.+...|++.+|.+++... .+..+....+ ..++.|+..+.+.+.+.-+..+|.+.++ .|+.|
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~ 323 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKP 323 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33445566666777776666443 1222211121 1234455556666667777666666653 23332
Q ss_pred C----------HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048794 682 D----------ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 682 ~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 730 (967)
. -...+..+-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 324 ~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 324 AKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred CcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1 112233444556667777777777666654 24566667777666654
No 255
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.97 E-value=0.02 Score=55.49 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD 803 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 803 (967)
-++.|.++|.+++|++.|.+.+... +.++..+...+.+|.+...+..|..-.+.++..+ ..-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555432 2234444455555555555555554444444321 0011133333333334445
Q ss_pred HHHHHHHHHHHHh
Q 048794 804 VETACELFKQMIK 816 (967)
Q Consensus 804 ~~~A~~~~~~~~~ 816 (967)
..+|-+-++.++.
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 5555555555554
No 256
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.96 E-value=0.074 Score=47.66 Aligned_cols=71 Identities=24% Similarity=0.408 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHhH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK-----KRGISPDLYTY 896 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 896 (967)
+...++..+...|++++|..++++++..+ +.+...+..++.+|...|+..+|.+.|+++. +.|++|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45567788889999999999999999854 4477789999999999999999999999875 45888887653
No 257
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.89 E-value=0.15 Score=47.04 Aligned_cols=103 Identities=24% Similarity=0.342 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048794 365 PDSVTYNMMMKCYSKV-----GQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVT 439 (967)
Q Consensus 365 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 439 (967)
.+..+|..++..|.+. |..+-....+..|.+.|+.-|..+|+.|+..+=+ |.+- ....
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccH
Confidence 4555666666666533 5556566666677777777777777777665433 1111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 048794 440 YNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNE 486 (967)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 486 (967)
+..+..-| ..+-+-|++++++|...|+.||..++..++..+.+.+
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 11111111 1234567777777777777777777777777775443
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.85 E-value=0.59 Score=42.78 Aligned_cols=97 Identities=11% Similarity=-0.090 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHH
Q 048794 486 EEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAK 565 (967)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 565 (967)
|-...|+--|...+... +.-+.+++-++-.+...|+++.|.+.|+...+..|....+...-+-++.--|++..|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 44444444444444443 22356777777778888999999999998888888888888777777777888888888888
Q ss_pred HHHhhcCCCcchhhHhhh
Q 048794 566 CSIYQIGTRAERQFWQDL 583 (967)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~ 583 (967)
+....++.+|-+..|.=+
T Consensus 158 ~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred HHHhcCCCChHHHHHHHH
Confidence 877777777766666433
No 259
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.85 E-value=0.17 Score=45.38 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=70.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKPN----CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
++-+...|++++|..-|..+++..+... ...|.+-+.+..+.+.++.|+.-..+.++ +.|. ..++...+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 4456778899999999998888633222 23566667778888899999999999888 4675 466667788899
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048794 835 MVGRVDDALHYFEELKLN 852 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~ 852 (967)
+..++++|+.-|+++++.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 999999999999999885
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.2 Score=48.88 Aligned_cols=154 Identities=12% Similarity=-0.014 Sum_probs=83.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhcCCH
Q 048794 659 LEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISH----NIVISGLVKSNSI 734 (967)
Q Consensus 659 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 734 (967)
.-.|++.+|-..++++++.- +.|..++...-.+|.-.|+.+.-...+++++.. ..+|...+ ..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 35566666666666666542 335555555556666667766666666666543 23333222 2233344566667
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHH
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN---CVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
++|.+.-+++++.+ +.+.-+...++..+...|++.++.++..+-...=-..+ ...|=-.+..+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777666653 33444455566666666777777666655432100001 112222344455566777777777
Q ss_pred HHHH
Q 048794 812 KQMI 815 (967)
Q Consensus 812 ~~~~ 815 (967)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6633
No 261
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.83 E-value=1.4 Score=49.60 Aligned_cols=254 Identities=14% Similarity=0.083 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHHcCCCcCHhhHHHHHHHH-----HccCChHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 048794 664 TEMGLDLFTTMKNAGCAPDISTYNLLLDGY-----GKSGRVEELLKLYEEMSF-------RGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 731 (967)
...|.++++...+.| +......++.++ ....+.+.|+.+|+.+.. .+ ...+...++.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888777764 444444444443 355789999999999877 44 344566778888774
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----
Q 048794 732 N-----SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS---GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG---- 799 (967)
Q Consensus 732 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 799 (967)
. +.+.|+.++.++...+.+. ....++.+|..- .+...|.++|..+.+.| .......++.+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCC
Confidence 3 6778999999998876333 334455555443 36789999999999876 4455555666653
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---H-h---
Q 048794 800 KTGDVETACELFKQMIKGGIRPDLKSYSVLVDC--LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL---G-R--- 870 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~-~--- 870 (967)
...+...|...++++.+.| .|. +...++.. +.. ++++.+.-.+..+.+.+.+.....-..+.... . .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~--A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~ 451 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPS--AAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGV 451 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-Chh--hHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccc
Confidence 3348899999999999976 343 33333333 333 78888877777776654333221111111111 1 1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHHHHhhcCCCcCCCCcccc-ccceeeeccC
Q 048794 871 SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA----GMVEEARKLAGGNCFVQPSEFVS-SELQVIYAEN 939 (967)
Q Consensus 871 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~ 939 (967)
..+.+.+...+.++.. +-+......++..+... .+++.|...+.++.... .-. ..++.++..=
T Consensus 452 ~~~~~~~~~~~~~a~~---~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g 519 (552)
T KOG1550|consen 452 ISTLERAFSLYSRAAA---QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHG 519 (552)
T ss_pred ccchhHHHHHHHHHHh---ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcC
Confidence 2267777888877763 34667777788777765 35899999998887666 222 5777777443
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.88 Score=44.29 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=93.8
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH
Q 048794 691 DGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE 770 (967)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 770 (967)
......|++.+|..+|..+.... +.+......++.+|...|+.+.|..++..+-.............-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888888887764 33455667788888888888888888876554321111112222345555655555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 048794 771 EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 840 (967)
+...+-.++-.. +-|...-..++..+...|+.++|++.+-.+++.+..- |...-..++.++...|.-+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 555555555542 2266677888888889999999999888887642221 2345556666666555433
No 263
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.2 Score=45.14 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=51.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
+..+...|++++|+..++..+....+.+ ..+-..|+++....|++|+|+..+......+. .......-++++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3345666777777777776664211111 12234556666677777777776665543221 2223344566777777
Q ss_pred CHHHHHHHHHHHHHc
Q 048794 873 RIEEALSLFDEMKKR 887 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~ 887 (967)
+-++|...|++++..
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 777777777777654
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=4.7 Score=45.29 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=96.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 91 SALMVAAGKRRNIKTVMNLLEEMERLGLRPN--VYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
..-+..+.+...++-|..+-.. .+..++ .......+..+-+.|++++|...|-+.... +.| ..++.-+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 3444555566666666555433 222221 122333444555778888887777665432 122 23444445
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048794 169 TAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFS 248 (967)
Q Consensus 169 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 248 (967)
...+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.+...++.+..- .|.- ..-....+..+.+.+-.++|..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 555566666677777766643 44445667788888888877776665433 1110 1113445556666666666665
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 048794 249 ILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNM 288 (967)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 288 (967)
+-..... .......++ -..+++++|+..+..+
T Consensus 485 LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 5544432 233333333 3456778887777654
No 265
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.65 E-value=0.017 Score=55.97 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 794 LINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
-++-|.++|++++|+..|.+.+. ..| +..++.+.+.+|.+.+++..|..-...++..+ +.-..+|+.-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 47778899999999999999887 567 67788888899999999998888888887653 334557887888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCH
Q 048794 873 RIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~ 893 (967)
...+|.+-++.+++ ++|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 88999988888885 66765
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.65 E-value=0.43 Score=49.87 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH--
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNG-LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL-- 903 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-- 903 (967)
..++.++-+.|+.+||++.++.+++.. ......+...|++++...+++.++..++.+..+...|....+-++-+-.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345555555555555555555555321 11122234455555555565555555555543221222222211111111
Q ss_pred -----------HhcC---CHHHHHHhhcCCCcCCCCcccc
Q 048794 904 -----------GRAG---MVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 904 -----------~~~g---~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+.| --..|.+.+.++.+.||.-|..
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 1111 1234667788888889988874
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.7 Score=40.63 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=24.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048794 133 GRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKA 185 (967)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 185 (967)
+..|.+++.....+.+...+-+--...-..|.-+-.+.|++..|.++|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555554444444333233333334444444455555555555555443
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=5.4 Score=44.84 Aligned_cols=177 Identities=17% Similarity=0.231 Sum_probs=100.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 048794 266 NTLICGLLRLDRVEEALEVFNNMEILGVQPT--AYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLA 343 (967)
Q Consensus 266 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (967)
..-+..+.+...++.|+.+.+. .+..++ .......+..+.+.|+.++|...+-+.+.. .--..++.-+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------le~s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------LEPSEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc------CChHHHHHHhc
Confidence 3445555566666666665433 222221 122333344455778888888777655432 11134455566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048794 344 ETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWE 423 (967)
Q Consensus 344 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 423 (967)
.......-...++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 666666677777777777743 33444567888888888877666655543 2211 1123455666667777777766
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 424 MFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGM 463 (967)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 463 (967)
+-.+... .......++. ..+++++|++.++.+
T Consensus 485 LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 6554432 3444444443 457788888877665
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.84 Score=41.35 Aligned_cols=94 Identities=14% Similarity=-0.005 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
+..+...|++++|...++..+...-+. ...+-..|+.+....|++++|...++.....+ -.+.....-+.++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcC
Confidence 334444455555555555444321011 11122234444555555555555544443110 01122223344555555
Q ss_pred CHHHHHHhhcCCCcCCCC
Q 048794 908 MVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 908 ~~~~A~~~~~~~l~~~p~ 925 (967)
+.++|+.-|++++...++
T Consensus 174 ~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 174 DKQEARAAYEKALESDAS 191 (207)
T ss_pred chHHHHHHHHHHHHccCC
Confidence 555555555555554433
No 270
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.47 E-value=0.0059 Score=38.01 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
+|..++.++...|++++|.+.++++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56667777777777777777777777777743
No 271
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.39 E-value=6.8 Score=44.97 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC--HHHHH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKG-GIRPD--LKSYS-----VLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~--~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
.+.+...+. .|+..+........... ...|+ ...|. .+...+...|+.++|.....+..
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 333333333 56666655544443321 11233 33442 33455677888888888776654
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.37 E-value=3.6 Score=41.60 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=67.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcC-CHHHHHHHHHHHHhC----C----CCCcH----
Q 048794 413 YKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLG-------KEG-QVQKAIELFEGMTDH----G----CFPNT---- 472 (967)
Q Consensus 413 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g-~~~~a~~~~~~~~~~----~----~~~~~---- 472 (967)
.+.|+.+.|..++.++.......++.....+...|. ..+ +++.|...+++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467888888888888765432234444444444442 355 778887777765432 1 12222
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcC
Q 048794 473 -VTFNTLLHCLCKNEEVD---LAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLY 538 (967)
Q Consensus 473 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (967)
.++..++.+|...+..+ .|..+++.+.... +..+.++..-+..+.+.++.+++.+.+.+|.....
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 33445555666555543 3444444443332 22233333444445556667777777777665433
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.27 E-value=2.3 Score=44.70 Aligned_cols=64 Identities=6% Similarity=0.004 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP-DISTYNLLLDGYGKSGRVEELLKLYEEMSF 711 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 711 (967)
..+...++..+.+.|+.++|++.++++.+..+.. .......|+..+...+.+.++..++.+.-+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444556666667888888888888887653222 233556677777788888888777777543
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.27 E-value=0.41 Score=43.13 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=74.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD------LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
+.-+...|++++|..-|..++.. .|. ...|.+-+.++.+.++++.|+.-..++++.+ +....++...+.+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHH
Confidence 44567889999999999999984 443 2345666888899999999999999999864 22445666778899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
-+..++++|+.-|+++++ ..|..
T Consensus 179 ek~ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHH--hCcch
Confidence 999999999999999986 34543
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.18 E-value=0.86 Score=38.05 Aligned_cols=139 Identities=21% Similarity=0.357 Sum_probs=77.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHH
Q 048794 238 CKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKAL 317 (967)
Q Consensus 238 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 317 (967)
.-.|.+++..+++.+.... .+..-+|.++.-....-+-+-..++++..-+. + | ...+|+.....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-F--D----------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-F--D----------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-------------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------chhhcchHHHH
Confidence 3467777778888776654 26666777777666666666666666655332 1 1 11233333333
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048794 318 ETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENG 397 (967)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 397 (967)
..+-.+-. ........+..+...|.-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++..+-+.|
T Consensus 77 ~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33222111 33344556667778888888888887776533 5677777788888888888888888888887776
Q ss_pred C
Q 048794 398 C 398 (967)
Q Consensus 398 ~ 398 (967)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 276
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.15 E-value=4.5 Score=41.46 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----C-
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT-----G- 802 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~- 802 (967)
+..+|.++|+.....+. ......++..|.. ..+..+|...|+++.+.|..+...+...++..|..- -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 35556666664444332 1233334444443 336677777777777765332223355555555442 1
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 048794 803 -DVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG----- 872 (967)
Q Consensus 803 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 872 (967)
+...|+..|.++...+ +......++.+|.. ..++++|..+|+++.+.+. ......++ .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchh
Confidence 2236888888887754 45566667766644 3368888888888888662 44444455 556555
Q ss_pred ----------CHHHHHHHHHHHHHcCCCC
Q 048794 873 ----------RIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 873 ----------~~~~A~~~~~~~~~~~~~~ 891 (967)
+...|...+......+.+.
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 6666677777766554443
No 277
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.06 E-value=3.8 Score=43.10 Aligned_cols=226 Identities=15% Similarity=0.066 Sum_probs=126.5
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH
Q 048794 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI 760 (967)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 760 (967)
-|...+.+++..+.+.-++.-...+..+++..| .+...+..++++|... ..+.-..+++++.+..+... ..-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv-v~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV-VIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH-HHHHHHH
Confidence 355666677777777777777777777777763 3566777777777777 44556677777776543322 2334455
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCC--CH---HHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKP--NC---VIYNILINGFGKTGDVETACELFKQMIKG-GIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 834 (967)
..|.+ ++.+.+..+|.++...-++. +. ..|..+... -..+.+.-+.+..++... |..--...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 77777777777776542220 11 144444332 123556666666665543 21112233344445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS-GRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
...++++|+++++-+++++ ..+..+...++.-+... .... +-+-|......-....++.++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~----------------~~e~yl~~s~i~~~~rnf~~~l 279 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHS----------------QLEEYLKISNISQSGRNFFEAL 279 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccch----------------hHHHHHHhcchhhccccHHHHH
Confidence 6666777777777666654 33333333333332210 0001 1112222222333345788999
Q ss_pred HhhcCCCcCCCCccccc
Q 048794 914 KLAGGNCFVQPSEFVSS 930 (967)
Q Consensus 914 ~~~~~~l~~~p~~~~~~ 930 (967)
.-|++.+..+..|++.+
T Consensus 280 ~dFek~m~f~eGnFVfH 296 (711)
T COG1747 280 NDFEKLMHFDEGNFVFH 296 (711)
T ss_pred HHHHHHheeccCceEEe
Confidence 99999999999999863
No 278
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.97 E-value=5 Score=41.11 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048794 336 NASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKA 415 (967)
Q Consensus 336 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 415 (967)
+..+.-+...|+...|..+-.... .|+...|...+.+++..+++++-.++... .-.+.-|...+..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444445555555554444332 34555555555555555555544443221 11224455555555555
Q ss_pred CCHHHHHHHHHH
Q 048794 416 DRVDEAWEMFCR 427 (967)
Q Consensus 416 ~~~~~A~~~~~~ 427 (967)
|...+|..++.+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555555544
No 279
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.95 E-value=2.4 Score=39.00 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=86.6
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH
Q 048794 692 GYGKSGRVEELLKLYEEMSFRGCKPN-TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE 770 (967)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 770 (967)
.|-+.|-+.-|.--|.+.+.. .|+ +..++.++--+...|+++.|.+.|+...+-++..+-...+. +..+.=-|+++
T Consensus 74 lYDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchH
Confidence 344445555555555555554 333 34555555556667777777777777766543322222222 22223346777
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 771 EAKKLFEEMLDYGCKPNCV--IYNILINGFGKTGDVETACELFK-QMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
-|.+-+.+..+.. +.|+. .|.-+. ...-++.+|..-+. +... ...+-.-|+.+...+.+. .++ .+++
T Consensus 151 LAq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yLgki--S~e--~l~~ 220 (297)
T COG4785 151 LAQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYLGKI--SEE--TLME 220 (297)
T ss_pred hhHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHHhhc--cHH--HHHH
Confidence 7766666665542 12322 222221 12235555554433 3332 121222233222222211 111 1222
Q ss_pred HHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 848 ELKLNGLDA------DTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 848 ~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++....-+. -.++|..|+.-+...|+.++|..+|+-+..
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 222110000 135677778888888888888888887764
No 280
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.80 E-value=0.035 Score=49.20 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcC-----------CHHHHHHhhcCCCcCCCCcccc
Q 048794 875 EEALSLFDEMKKRGISPDL-YTYNSLILNLGRAG-----------MVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++|++-|++++. +.|+. +++..++.++...+ .|++|...|+++...+|+|...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 344444444443 34443 55666666555432 2566777777777777777664
No 281
>PRK09687 putative lyase; Provisional
Probab=94.80 E-value=5.1 Score=40.32 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048794 864 MINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.+.++...|.. +|...+.++.
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHH
Confidence 44444444442 3444444444
No 282
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.78 E-value=0.12 Score=43.07 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSG---RIEEALSLFDEMKKRGISPDL--YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++..+-..+++++.++. +..+.+.+++.+.+. -+|+. +..+-|+-.+++.|+|++++++.+..++.+|+|+-+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555556666666555 344555566665542 22222 444555666666666666666666666666666654
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.46 E-value=0.053 Score=33.51 Aligned_cols=22 Identities=32% Similarity=0.214 Sum_probs=13.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHH
Q 048794 892 DLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
+..+|..|+.+|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3456666666666666666654
No 284
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.43 E-value=4.8 Score=38.39 Aligned_cols=209 Identities=15% Similarity=0.150 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHHHHHcCCCc---CHhhHHHHHHHHHccCChHHHHHHHHHHHhC---CC--CCChhhHHHHHHHHHhcC
Q 048794 661 VHATEMGLDLFTTMKNAGCAP---DISTYNLLLDGYGKSGRVEELLKLYEEMSFR---GC--KPNTISHNIVISGLVKSN 732 (967)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~ 732 (967)
..++++|+.-|.++++..... ...++-.++....+.|++++.+..|.+++.. .+ ..+..+.++++.....+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346677777777776642222 2334445566677778888877777776532 00 112234444444333333
Q ss_pred CHHH-------HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHH
Q 048794 733 SIDK-------AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC----KPN-------CVIYNIL 794 (967)
Q Consensus 733 ~~~~-------A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-------~~~~~~l 794 (967)
+.+- .++.++.+...... ..+-..++..|...|++..-.++++++..... ..| ..+|..-
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLW--FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLW--FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceee--eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 3322 22333332222111 11334567777777777777777777653211 111 2245555
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHH----HCCCCCCHH---HHH
Q 048794 795 INGFGKTGDVETACELFKQMIKG-GIRPDLKSYSVL----VDCLCMVGRVDDALHYFEELK----LNGLDADTI---SYN 862 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~---~~~ 862 (967)
+.+|..+++-.+--.+|++.+.- .--|.+...-.+ +.+..+.|++++|..-|=++. +.| .|... -|.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYL 276 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHH
Confidence 66777777766667777776541 123433222211 334556777877765444443 233 33222 244
Q ss_pred HHHHHHHhcC
Q 048794 863 FMINGLGRSG 872 (967)
Q Consensus 863 ~l~~~~~~~g 872 (967)
.|+..+.++|
T Consensus 277 VLANMLmkS~ 286 (440)
T KOG1464|consen 277 VLANMLMKSG 286 (440)
T ss_pred HHHHHHHHcC
Confidence 4566666666
No 285
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.41 E-value=12 Score=42.83 Aligned_cols=229 Identities=12% Similarity=0.044 Sum_probs=124.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCChh-------hHHHHH-HHHHhcCCHHHHHHHHHHHHhCC----CCCChhcHHHH
Q 048794 692 GYGKSGRVEELLKLYEEMSFRGCKPNTI-------SHNIVI-SGLVKSNSIDKAMDLFYNLVSGG----FSPTPCTYGPL 759 (967)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l 759 (967)
......++++|-.+..++...=..|+.. .+..+- ......|+++.|.++.+.++..- .......+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4456677888888877765532122211 222222 23346788999999998888762 12233456677
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHH--HHHHhccC--CHHHHHHHHHHHHhC--CCCCC----HHHH
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKPNCV---IYNIL--INGFGKTG--DVETACELFKQMIKG--GIRPD----LKSY 826 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~--~~~p~----~~~~ 826 (967)
+.+..-.|++++|..+..+..+..-.-+.. .|..+ ...+..+| .+.+.+..+...... .-.|- ..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 778888899999999988776531122322 23332 33456677 334444444444321 11222 1233
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--H--HhHHHH
Q 048794 827 SVLVDCLCM-VGRVDDALHYFEELKLNGLDADTI--SYNFMINGLGRSGRIEEALSLFDEMKKRGISPD--L--YTYNSL 899 (967)
Q Consensus 827 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~--~~~~~l 899 (967)
..+.+++.+ .+...++...+.--......|-.. .+++|+.+....|+.++|...+.++......++ . ......
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 333444443 122223333332222222222222 234788999999999999999999875433332 2 111122
Q ss_pred HH--HHHhcCCHHHHHHhhcCCC
Q 048794 900 IL--NLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 900 ~~--~~~~~g~~~~A~~~~~~~l 920 (967)
+. .....||.++|..+..+..
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhcc
Confidence 22 2225699999988887743
No 286
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.38 E-value=0.63 Score=39.73 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 048794 118 LRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE-GCGPDVVTYTVLIDALCTA 170 (967)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 170 (967)
..|+..+..+++.+|+..|++..|.++.+.+.+. +++.+..+|..|+..+...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4577788888888888888888888888877654 5666777788877765543
No 287
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.23 E-value=0.89 Score=38.86 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCCCCHHHHHHHHHH
Q 048794 468 CFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPR-NCWPDVLTYNTIIYG 516 (967)
Q Consensus 468 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 516 (967)
..|+..+..+++.+|+..|++..|.++++..... +++.+...|..++..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3466777777777777777777777777666554 344556666666655
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.17 E-value=1.7 Score=46.07 Aligned_cols=118 Identities=15% Similarity=0.042 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-------- 892 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 892 (967)
.++..++.++.+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..++...+..+..+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 456666666666777777766666665422111 233334445556666666777666666554111110
Q ss_pred -------------------------HHhHHHHHHHHHhc------CCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCC
Q 048794 893 -------------------------LYTYNSLILNLGRA------GMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENP 940 (967)
Q Consensus 893 -------------------------~~~~~~l~~~~~~~------g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g 940 (967)
..++..++.-.... ++.+++.+.++++.+++|+.... +.+|..+...-
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 12233444444444 78888999999999999988876 56666665443
Q ss_pred C
Q 048794 941 R 941 (967)
Q Consensus 941 ~ 941 (967)
+
T Consensus 307 ~ 307 (352)
T PF02259_consen 307 E 307 (352)
T ss_pred H
Confidence 3
No 289
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.83 E-value=2.2 Score=45.94 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVIS 726 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 726 (967)
+...|..|+......|+++-|+..|.+..+ +..|+-.|...|+.+.-.++.+.+...| -++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 344555555555555665555555544432 2234444555555555555554444432 1233334
Q ss_pred HHHhcCCHHHHHHHHH
Q 048794 727 GLVKSNSIDKAMDLFY 742 (967)
Q Consensus 727 ~~~~~~~~~~A~~~~~ 742 (967)
++...|+.++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444555555554443
No 290
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.80 E-value=5.7 Score=41.54 Aligned_cols=108 Identities=17% Similarity=-0.037 Sum_probs=59.6
Q ss_pred HHhccCCHHHHHHHHHHHHhC---C--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC----
Q 048794 797 GFGKTGDVETACELFKQMIKG---G--IRPD---LKSYSVLVDCLCMVGRVDDALHYFEELKL-------NGLDAD---- 857 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~---~--~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~---- 857 (967)
.+.-+|++.+|.+++...--+ | +.|. -..|++|+-++.+.|.+.-+..+|++++. .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344555666666655543211 1 1222 12345555555566666655555555542 233332
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 858 ------TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 858 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
.+...+.+-.|.+.|+.-.|.++|.++... +.-++..|..|+.++..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233444566677777777777777777654 55667777777776664
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.75 E-value=0.027 Score=34.65 Aligned_cols=30 Identities=17% Similarity=-0.022 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
+..++.++.+.|++++|++.++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344555555556666666666665555554
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.66 E-value=8.9 Score=38.74 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=31.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH-------HHhcC-cHHHHHHHHHHHHH
Q 048794 28 SLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHF-------ILQSG-FCREALAVYKRVVS 80 (967)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~~A~~~~~~~~~ 80 (967)
.+.|+++.|...+.++.......++.....+... ....+ ++++|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4678899999999998865422233332222222 23344 77777777766544
No 293
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.63 E-value=0.59 Score=41.81 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCC-------HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGK---TGD-------VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
++.|.+.++.....+ +.|...++..+.++.. ..+ +++|+.=|++++. +.|+ ..++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 566777777765543 3466666666555432 233 3445555555555 6788 478888888886544
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 838 R-----------VDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 838 ~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
. +++|..+|+++.. .+|+...|..-++.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEM 122 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 3 4555555666655 36777777654444
No 294
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.53 E-value=5 Score=35.44 Aligned_cols=127 Identities=12% Similarity=0.075 Sum_probs=72.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048794 19 TYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAG 98 (967)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (967)
....++..+...+....+...++.+...+. .++..++.++..+++.+ .....+.+.. ..+......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 344566677777777777777777777664 46677777777777653 3333343332 123344555666677
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 99 KRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRA-GKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
+.+.++++.-++..+.. +...+..+... ++++.|.+.+.+. .+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777666655421 11122233333 6667776666552 24456666665554
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.41 E-value=0.18 Score=31.71 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
..|+.+|.+.|++++|+.+|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.36 E-value=3 Score=44.93 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=62.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 89 TYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
..+.++.-+-+.|..+.|+.+-.+ .. .-.....++|+++.|.++.++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 355555555555555555444322 11 1223344556666665554332 24456666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048794 169 TAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFS 248 (967)
Q Consensus 169 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 248 (967)
+.|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+.....|- ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666665532 33444455555666655555555544431 1222233334455555555
Q ss_pred HHHH
Q 048794 249 ILDL 252 (967)
Q Consensus 249 ~~~~ 252 (967)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 297
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=1.6 Score=40.89 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=58.8
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 840 (967)
|....++..|+..|.+++.. .|... .|.+=+.++.+.++++.+..--.++++ +.|| ....+.++.++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 33444566666666666653 44443 344445566666677777766666666 4566 355666666666777777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 048794 841 DALHYFEELKL----NGLDADTISYNFMING 867 (967)
Q Consensus 841 ~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 867 (967)
+|+..++++.+ ..+++.......|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77777776642 3333444444444444
No 298
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=16 Score=40.71 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=77.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGR 870 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 870 (967)
.+.-+.-+..-|+..+|.++-.+.. -||...|..-+.++...+++++-+++-++. .++..|.-...+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHh
Confidence 3334444566778888887766653 578788888888899999998877775542 224556667778889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcC
Q 048794 871 SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGG 918 (967)
Q Consensus 871 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 918 (967)
.|+.++|.+++-++. |.+ ....+|.+.|++.+|.+.+-+
T Consensus 757 ~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 999999998887664 222 356678888888888877653
No 299
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.29 E-value=11 Score=38.68 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048794 371 NMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKE 450 (967)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 450 (967)
+..+.-+...|+...|.++-.... .|+...|...+.+++..++|++-..+... . -++.-|...+..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333445556677666666654442 46666777777777777777766654332 1 1335567777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 048794 451 GQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEM 498 (967)
Q Consensus 451 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (967)
|+..+|..++.++ ++ ..-+..|.+.|++.+|.+.-.+.
T Consensus 251 ~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777777776662 11 23345566777777776654333
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.17 E-value=1.7 Score=39.97 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHH--H
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLD---ADTISY--N 862 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~--~ 862 (967)
.+..++..|.+.|+.++|++.|.++.+....|. ...+..++++....|++..+..++.++...-.. .+.... .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 677788888888888888888888877544444 355677788888888888888888877642111 111111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.-+-.+...|+|.+|.+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11223456778888888876665
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.16 E-value=0.045 Score=37.76 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+..++-.+.+.|+|++|.++.+.+|+.+|+|.-+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3445555666666666666666666666666654
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.15 E-value=0.19 Score=31.54 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777754
No 303
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.08 E-value=3.1 Score=34.94 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
.++..+|+-|.-.+++...... -++++..+..++.+|.+.|+..++.++++++.+.|+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444445544444444444432 245555555555556666666666665555555443
No 304
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=18 Score=40.47 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 048794 337 ASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQV--DEAVTLLSEMVENGCEPDVIVMNTLIDTLYK 414 (967)
Q Consensus 337 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 414 (967)
.++..+...+.+..|+++-..+...-..- ...|.....-+.+..+. +.+.+.++.=.... ..+...|..+++-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHh
Confidence 34666778888888888877765422111 45666666666655322 23333333322221 2345567777777788
Q ss_pred cCCHHHHHHHHHH
Q 048794 415 ADRVDEAWEMFCR 427 (967)
Q Consensus 415 ~~~~~~A~~~~~~ 427 (967)
+|+.+-|..+++.
T Consensus 520 ~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 520 EGRFELARKLLEL 532 (829)
T ss_pred cCcHHHHHHHHhc
Confidence 8999888887754
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.04 E-value=3.6 Score=36.42 Aligned_cols=114 Identities=13% Similarity=0.014 Sum_probs=67.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 048794 24 FKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNI 103 (967)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (967)
+..-.+.++..+++.+++.++-..|. .+..-..-...++..|+|.+|+.+|+.+... .|.......|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCC
Confidence 45556777888898888888877654 3332333444578889999999999998664 35444555566555555444
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048794 104 KTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYR 143 (967)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (967)
..-+..-+++...+. |..+ ..+++.+....+...|..
T Consensus 94 ~~Wr~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGA--DPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCC--ChHH-HHHHHHHHHhccccchhh
Confidence 444444455555442 3333 234445544444444433
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.00 E-value=0.21 Score=30.88 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+|..++.++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555544
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.98 E-value=14 Score=39.10 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 048794 631 AKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLD 691 (967)
Q Consensus 631 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 691 (967)
......++....+......++..+-.-|....++.+|++++..+++.+ ..|..+-..++.
T Consensus 188 fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 188 FLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 333333333333333334444444455666667777777777666553 334444433433
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.71 E-value=0.27 Score=30.31 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.+..++.++...|++++|++.++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555553
No 309
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=1 Score=42.11 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=88.9
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRI 874 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 874 (967)
.|.....+..|+..|.+.+. +.|.. .-|.+-+.++.+.++++.+..--.++++. .|+ ......++..+.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 45566789999999999998 68987 45567889999999999999999998885 454 45667799999999999
Q ss_pred HHHHHHHHHHH----HcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048794 875 EEALSLFDEMK----KRGISPDLYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 875 ~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
++|+..+.++. ...+++...++..|-.+-.+--+..++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 99999999984 33355566888877766665555555555
No 310
>PRK09687 putative lyase; Provisional
Probab=92.58 E-value=13 Score=37.52 Aligned_cols=225 Identities=14% Similarity=0.084 Sum_probs=139.3
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCChhcH
Q 048794 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI----DKAMDLFYNLVSGGFSPTPCTY 756 (967)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~ 756 (967)
++.......+..+...|. +++......+.. .+|.......+.++.+.|+. .++...+..+... +++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 444444445555555553 344444444443 23455555555666666653 4566666665433 3344444
Q ss_pred HHHHHHHHcCCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048794 757 GPLIDGLSKSGR-----LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVD 831 (967)
Q Consensus 757 ~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 831 (967)
...+.++...+. ...+...+..+.. .++..+....+.++.+.++ ++|+..+-.+++ .++..+...-+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 444445444432 2344555555444 3466677777777777766 678888888887 455555555566
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 048794 832 CLCMVG-RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 832 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 910 (967)
++.+.+ ...++...+..++. .++..+....+.++.+.|. .+|+..+-+.++. ++ .....+.++...|. +
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~-~ 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGD-K 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCC-H
Confidence 666553 25577777777774 5577777778888888888 5788877777743 22 34567788899988 5
Q ss_pred HHHHhhcCCCcCCCCccc
Q 048794 911 EARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 911 ~A~~~~~~~l~~~p~~~~ 928 (967)
+|...+++++..+|+...
T Consensus 252 ~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 252 TLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred hHHHHHHHHHhhCCChhH
Confidence 899999999888885443
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.20 E-value=22 Score=42.10 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
..|+.-+...++.-+|.++.++..+ +|.. ....|++...+++|.++....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s---d~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS---DPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc---CHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 4555555666666666666555443 2222 112344555666666554443
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.19 E-value=17 Score=38.48 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcC-----------------CHHHHHH
Q 048794 859 ISYNFMINGLGRS------GRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAG-----------------MVEEARK 914 (967)
Q Consensus 859 ~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-----------------~~~~A~~ 914 (967)
.++..++...... +..+++...|+.+.+ +.|+. ..|..++..+.+.= -...|+.
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~ 330 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIE 330 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHH
Confidence 3455555555555 788888888888885 44443 56666665544331 1134666
Q ss_pred hhcCCCcCCCC
Q 048794 915 LAGGNCFVQPS 925 (967)
Q Consensus 915 ~~~~~l~~~p~ 925 (967)
.|-+++...|+
T Consensus 331 ~y~~al~~~~~ 341 (352)
T PF02259_consen 331 GYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhCCC
Confidence 66666666666
No 313
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.17 E-value=15 Score=37.52 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=102.7
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cC
Q 048794 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK----SN 732 (967)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 732 (967)
.+++..+...+......+ +......++..|.. ..+..+|+++|+.+...| .......++..|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 344555555555555422 11233333333332 234666777777665543 23344445555544 33
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG-------RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK----T 801 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 801 (967)
+..+|..+|+++...|..+.......++..|..-. +...|...|.++...+ +......++.+|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 67777777777777654433222344444444321 2347888888888764 55666677777643 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCC
Q 048794 802 GDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVG---------------RVDDALHYFEELKLNG 853 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~ 853 (967)
.++++|...|.+..+.|. ......+. ++...| +...|..++..+...+
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 488999999999888653 44555566 555555 5556666666665554
No 314
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.76 E-value=29 Score=39.89 Aligned_cols=238 Identities=13% Similarity=0.051 Sum_probs=129.5
Q ss_pred CCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCC---CCH---HHHHHHH-HHHHhcCChHHHHHHHHHHHHcCC----
Q 048794 611 DDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVT---STL---EMYNYLI-HGLLEVHATEMGLDLFTTMKNAGC---- 679 (967)
Q Consensus 611 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~---~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~---- 679 (967)
.+.....-+.......++.+|..++.++....+.+ ... ..++.+- .+....|+++.|.++.+.....-+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 34445555666677888999998888875443331 111 1333332 334477889999999888876521
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhh---HHHH--HHHHHhcCCH--HHHHHHHHHHHhCCC---
Q 048794 680 APDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS---HNIV--ISGLVKSNSI--DKAMDLFYNLVSGGF--- 749 (967)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~--~~A~~~~~~~~~~~~--- 749 (967)
.+....+..++.+..-.|++++|..+.++..+..-..+... |..+ ...+..+|+. .+....|........
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 12345567778888889999999999887765421223222 2222 2345566733 333334433333211
Q ss_pred C---CChhcHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--
Q 048794 750 S---PTPCTYGPLIDGLSKS-GRLEEAKKLFEEMLDYGCKPNCV--IYNILINGFGKTGDVETACELFKQMIKGGIRP-- 821 (967)
Q Consensus 750 ~---~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-- 821 (967)
+ +-..++..+..++.+. +...+|..-++-.......|-.. .+..++.++...|++++|...++++......+
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 1 1122334444444441 11222222222222221111111 23467888889999999999999987632222
Q ss_pred --CHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 048794 822 --DLKSYSVLVDC--LCMVGRVDDALHYFEE 848 (967)
Q Consensus 822 --~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 848 (967)
+..+....+.+ -...|+.+++.....+
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222322 2456888888877766
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.47 E-value=0.14 Score=30.91 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
.+..++..+...|++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455666666666666666666666666664
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.39 E-value=1.5 Score=43.20 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCcHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMER-----LGLRPNVYTFTI 127 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 127 (967)
.++..++..+...|+++.+.+.++++.... +-+...|..++.++.+.|+...|...|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445566666666666666666666666643 34555666666666666666666666666654 355666655555
Q ss_pred HHHH
Q 048794 128 CIRI 131 (967)
Q Consensus 128 l~~~ 131 (967)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.38 E-value=6.9 Score=34.01 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=45.5
Q ss_pred CCCCcccHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048794 13 INRDLSTYLTI---FKALSLKGGLRRASFALEKMRAAGFVL-NAYSYNGFIHFILQSGFCREALAVYKRVVSEG 82 (967)
Q Consensus 13 ~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 82 (967)
+.++..+-..| +..-...++..++..+++.|+-..|.. ...++. ...++..|+|.+|+.+|+.+.+.+
T Consensus 3 ~qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 3 IQCSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CcCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 34444444433 344556888999999999988776542 223333 345788899999999999997754
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.18 E-value=4.6 Score=38.55 Aligned_cols=86 Identities=20% Similarity=0.133 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCC-----CHHHHH
Q 048794 801 TGDVETACELFKQMIK----GGIRPDL--KSYSVLVDCLCMVGRV-------DDALHYFEELKLNGLDA-----DTISYN 862 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~-----~~~~~~ 862 (967)
...+++|++.|.-++- .+.+|.. ..+..+++.|...|+. ..|++.|.++.+..-.| ......
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3345555555544332 1223332 2334455666555552 23445555554321111 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++.+..+.|++++|.+.|.++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Confidence 566777777777777777777763
No 319
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.00 E-value=11 Score=33.52 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=27.8
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 98 GKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
.+.++.+++..++..+.-.. |.....-..-...+...|++.+|..+|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666655432 112222233344455666666666666666554
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.89 E-value=2.2 Score=39.23 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 770 EEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG---GIRPDLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 770 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
++|.+.|-++-..+.-.++.....++..|.+ .+.++|+.++-++++. +-.+|+..+..|+.++.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555555444333344455555555543 3556666666665542 12344555556666666666665554
No 321
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.81 E-value=20 Score=36.31 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 841 DALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
++..+++.+.+.++++....|..+|
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4444555555555555444444443
No 322
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.67 E-value=2.9 Score=41.23 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
++..++..+...|+++.++..+++++.. .| +...|..++.+|...|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444555555555555555555555542 23 23445555555555555555555555443
No 323
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=25 Score=37.10 Aligned_cols=178 Identities=17% Similarity=0.042 Sum_probs=110.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-CCC--H------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGC-KPN--C------VIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSY--SVLVDC 832 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~-~~~--~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~ 832 (967)
.-.|++.+|++-+..|.+... .|. . .....++...+.-+.++.|...|..+.+....-|..++ .+++..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 347999999999988876421 122 1 12333444445668899999999998875333444443 466888
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----hHHHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNG-LDADTI-----SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLY-----TYNSLIL 901 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~ 901 (967)
|.+.|+-+.-.+.++.+--.+ ++.+.. .+...+-.....|++.||...+.+.++-..-.|.. .+.-|+.
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 888888777666666543211 111221 22223333468899999999999888532111211 1234455
Q ss_pred HHHhcCCHHHHHHhhcCCC---cCCCCcccc----ccceeeeccCCC
Q 048794 902 NLGRAGMVEEARKLAGGNC---FVQPSEFVS----SELQVIYAENPR 941 (967)
Q Consensus 902 ~~~~~g~~~~A~~~~~~~l---~~~p~~~~~----~~l~~~~~~~g~ 941 (967)
+....||..++.+...-+. ++-|+.++. ..+-.+|-..|+
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 6667899999999888666 456777763 256666766666
No 324
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.54 E-value=21 Score=36.14 Aligned_cols=131 Identities=16% Similarity=0.284 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHccCCH
Q 048794 138 IDEAYRILKRMDDEGCGPDVVTYTVLIDALCT--A----GRLDQAKEIFLKMKASSH---QPDQVTYITLLDKFSDCGNI 208 (967)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 208 (967)
+++...+++.+.+.|+..+..++-+....... . ....+|..+|+.|++..+ .++...+..++.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777788888877777665543332222 2 234678889999987653 3444455555433 33343
Q ss_pred ----HHHHHHHHHHHhCCCCCcH--hHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048794 209 ----EVVKEFWSQMVADGYAADV--VTYTIFVDALCKVGN--VEEAFSILDLMRGEGILPNLHTYNTLIC 270 (967)
Q Consensus 209 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 270 (967)
+.++.+++.+.+.|+.... .....++........ ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4556667777776665432 233333332221111 3467777888888888777666655543
No 325
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.52 E-value=3.6 Score=37.95 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 048794 649 EMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPD--ISTYNLLLDGYGKSGRVEELLKLYEEMSF 711 (967)
Q Consensus 649 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 711 (967)
..+..++..|.+.|+.+.|++.|.++.+....+. ...+..++......+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666777777777777777777766533322 23445556666666777777666666544
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.26 E-value=9 Score=35.46 Aligned_cols=77 Identities=10% Similarity=-0.006 Sum_probs=51.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN---GLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
+.|+ +.|.+.|-++...+.--++.....|+..|. ..+.+++++++.++++. +-++++..+..|+.++.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4444 677777777766544445566666666665 45777888888777752 224466777777777777777777
Q ss_pred HH
Q 048794 877 AL 878 (967)
Q Consensus 877 A~ 878 (967)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 327
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.17 E-value=28 Score=36.83 Aligned_cols=328 Identities=13% Similarity=0.004 Sum_probs=179.6
Q ss_pred chHHHHHHHHhhc-cHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH---
Q 048794 614 VVVPIIKLFCRQK-KALAAKDLFVKFTENLGVTS--TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN--- 687 (967)
Q Consensus 614 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--- 687 (967)
.+..++..|+... ....++..+++.++.....+ .-.....++..+.-.+++..|.+.+.-=.+.. .+-...|.
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ 168 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHH
Confidence 3456677777766 77788888888765443332 23344566777778888888877642111110 11111111
Q ss_pred -HHHH--HHHc---cCChHHHHHHHHHHHhCCCCCChhh-------H-HHHHHHHHhcCCHHHHHHHHHHHHh---CCCC
Q 048794 688 -LLLD--GYGK---SGRVEELLKLYEEMSFRGCKPNTIS-------H-NIVISGLVKSNSIDKAMDLFYNLVS---GGFS 750 (967)
Q Consensus 688 -~l~~--~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~-------~-~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~ 750 (967)
.+.. .+.. ..+...+.....++... ..+|..- | ..-+.-|...|+...+...++++.. .+.+
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 1111 1111 22334444555555544 2334321 1 1112334556776666655554432 2111
Q ss_pred C------------Ch--hcH-----------HHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHH--------HH
Q 048794 751 P------------TP--CTY-----------GPLIDGLSKSGRLEEAKKLFEEMLDY----GCKP-NCVI--------YN 792 (967)
Q Consensus 751 ~------------~~--~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~--------~~ 792 (967)
+ .+ ..| .....--.-.|-+++|.++-++++.. .-.+ ...+ ..
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 1 11 111 11111111345566666655555421 0011 1111 22
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-
Q 048794 793 ILINGFGKTGDVETACELFKQMIKG-GIRPDL--------KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYN- 862 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~- 862 (967)
.++.+-.-.|++.+|++-...|.+- .-.|.. .....++-.+...|.++.|...|..+.+.....+..++.
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2333334679999999999998762 123431 223445556667789999999999988643344555443
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc--
Q 048794 863 -FMINGLGRSGRIEEALSLFDEMKKRGISPD----------LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-- 929 (967)
Q Consensus 863 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-- 929 (967)
.++-.|.+.|+-++-.++++..- +++ ..++...+-..++.|++.||..++.+.++.. +.-..
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~r 482 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNR 482 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHH
Confidence 47788999888777666555542 221 2345555666778899999999999999876 22211
Q ss_pred ------ccceeeeccCCCcccccch
Q 048794 930 ------SELQVIYAENPRATSLSHK 948 (967)
Q Consensus 930 ------~~l~~~~~~~g~~~~~~~~ 948 (967)
..|+.+....|+..++.+.
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nm 507 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNM 507 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhc
Confidence 2688999999998876653
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.91 E-value=9.8 Score=36.33 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=59.1
Q ss_pred cCCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccCC-------HHHHHHHHHHHHhCCCCC----C-HHHH
Q 048794 765 KSGRLEEAKKLFEEMLD----YGCKPN--CVIYNILINGFGKTGD-------VETACELFKQMIKGGIRP----D-LKSY 826 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~p----~-~~~~ 826 (967)
....+++|++.|.-++- .+.++. ...+..+++.|...|+ +..|++.|++.......| + ....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34456667666665432 122333 2367788888888887 455666666666542222 1 3556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
+.++....+.|++++|.++|.+++..+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 778889999999999999999999643
No 329
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.83 E-value=16 Score=32.20 Aligned_cols=43 Identities=7% Similarity=0.106 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048794 337 ASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKV 380 (967)
Q Consensus 337 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (967)
.++..+...+........++.+...+ +.+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555443 23444555555555543
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.48 E-value=16 Score=31.86 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 99 KRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
...+.+++..++..+.-.. |.....-..-...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665442 112222233344556666777777777666654
No 331
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.38 E-value=19 Score=32.53 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048794 143 RILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADG 222 (967)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 222 (967)
+.++.+...+++++...+..++..+.+.|.+..-..+ .+.++-+|.......+-.+. +.+..+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444444556666767777777777777665444333 33334444443333222221 2233344444344332
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 223 YAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
=...+..++..+...|++-+|.+.....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1113344555666666666666666554
No 332
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.32 E-value=9.9 Score=32.30 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 785 KPNCVIYNILINGFGKTG---DVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.++..+..++++++.+.. +..+.+.++++..+. -.|+ ....+.|+-.+.+.|+|++++++.+..++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445556666666666544 455667777776652 2343 345566666677777777777777766664
No 333
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=4 Score=38.41 Aligned_cols=61 Identities=15% Similarity=0.019 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 864 MINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
+.+++...|++-++++.-...+.. -+.+.-+|..-+.+.....|..+|..-+.++|+++|.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 344444555555555555555532 2222344444444555555555555555555555554
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.82 E-value=0.53 Score=49.78 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=54.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
..|+...|.+.+..+.. ..|. ......|+.++.+.|....|-.++.+.+... ...+.++..++.++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 45666666666666655 2343 2344556666666666666666666665543 33445555666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHH
Q 048794 878 LSLFDEMKKRGISPDLYTYNSL 899 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l 899 (967)
++.++++++. -+.+..+-..|
T Consensus 696 ~~~~~~a~~~-~~~~~~~~~~l 716 (886)
T KOG4507|consen 696 LEAFRQALKL-TTKCPECENSL 716 (886)
T ss_pred HHHHHHHHhc-CCCChhhHHHH
Confidence 6666666643 22233444444
No 335
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=87.27 E-value=5.9 Score=38.19 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 048794 278 VEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADP 313 (967)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (967)
-.-++.++++|...|+.||..+-..++.++++.+.+
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 345778899999999999999999999988887754
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.27 E-value=62 Score=37.19 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHHHHHh---c
Q 048794 165 DALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGY-AADVVTYTIFVDALCK---V 240 (967)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~ 240 (967)
..+.-.|.++.|.+++-.. .....+.+++...+..|.- +......-..++.... .+.+..+..++..|++ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGL---LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCC---CCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 3455667777777776661 1223344444444333321 1111111122221110 1112445566666654 3
Q ss_pred CCHHHHHHHHHHHHhC
Q 048794 241 GNVEEAFSILDLMRGE 256 (967)
Q Consensus 241 g~~~~a~~~~~~~~~~ 256 (967)
.+..+|.++|-.+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4666666666655543
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.01 E-value=1.7 Score=26.62 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+|..++.+|...|++++|...|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555555555555555554
No 338
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=86.97 E-value=5.4 Score=38.43 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 048794 120 PNVYTFTICIRILGR-----AGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVT 194 (967)
Q Consensus 120 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 194 (967)
.+-.+|...+..+.. .+.++-.-..++.|.+.|+..|..+|+.|+..+-+..-. |.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHH-H
Confidence 345556655555543 345666666777788888888888888888765443211 111 0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCC
Q 048794 195 YITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGN 242 (967)
Q Consensus 195 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 242 (967)
+...+-.|- .+-+-+..++++|...|+-||..+-..++.++.+.+-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1223345556666666666666666666666555543
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.55 E-value=1.7 Score=28.24 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
+++.|+.+|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666655554
No 340
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.38 E-value=69 Score=36.88 Aligned_cols=206 Identities=9% Similarity=-0.021 Sum_probs=115.1
Q ss_pred ccCChHHHHHHHHHHHhCC-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHH
Q 048794 695 KSGRVEELLKLYEEMSFRG-CKPNT--ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 771 (967)
...+.+.|..++.+..... ..+.. .....++......+...+|...+........ +.....-.+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHH
Confidence 3456788999998865432 11111 1223333222333225677777776544322 22233333444457889998
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHH---HHH
Q 048794 772 AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRV-DDALH---YFE 847 (967)
Q Consensus 772 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~---~~~ 847 (967)
+...+..+.... .....-...++.++...|+.++|...|+++.. .. +|+.+... .+.|.. .-... .-.
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchh
Confidence 888888875532 22445667788887778999999999999754 12 34433222 112221 00000 000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 848 ELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 848 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
.. +...+ ....+..+...|+..+|...+..+... .+..-...++......|.++.|+....+.
T Consensus 403 ~~----~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SA----LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hh----hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00 01111 122445667788888888888887753 34455566677777778888887766544
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.21 E-value=78 Score=37.30 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C-c-CHhhHHHHHHHHHccCCh--HHHHHHHHHHHhCCCCCChhhH---
Q 048794 650 MYNYLIHGLLEVHATEMGLDLFTTMKNAGC-A-P-DISTYNLLLDGYGKSGRV--EELLKLYEEMSFRGCKPNTISH--- 721 (967)
Q Consensus 650 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-~-~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~--- 721 (967)
.|..|+..|...|..++|++++.+..+..- . + -...+..++....+.+.. +-.+++-....+..+......+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 467788888888888999988888887320 0 0 111233344444444444 4444444444433211110011
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC--------CCHHHHHHH--HHHHH--
Q 048794 722 ---------NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS--------GRLEEAKKL--FEEML-- 780 (967)
Q Consensus 722 ---------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~--~~~~~-- 780 (967)
...+-.|......+-+..+++.+......++....+.++..|... ++-+++.+. .+++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 112233566677777888888888775444555556666665432 122233333 22221
Q ss_pred -H--CCCCCC--------HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 781 -D--YGCKPN--------CVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 781 -~--~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
+ ..+.|. ...|...+..+.+.|+.++|+.+|-..+.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 111221 22344445555677788888888777765
No 342
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.61 E-value=0.9 Score=42.06 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=46.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
...+.|+.+.|.++|.+++.. .+.....|..++....+.|+++.|.+.+++.++++|++-..
T Consensus 4 ~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 345677888888888888753 33345778888888888888888888888888888887664
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.29 E-value=78 Score=36.50 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=91.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCh--hhHHHHHHHHH-hcCcHHHHHHHHHHHHHcCCCCCHh---
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRA-AGFVLNA--YSYNGFIHFIL-QSGFCREALAVYKRVVSEGIKPSLK--- 88 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~--- 88 (967)
.++.|..|+.. |+..++.+.+ ..++|.. .++-.+...+. ...+++.|...+++.+...-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 44555555544 5666666663 3333322 34445555554 6677888888887765433222222
Q ss_pred -hHH-HHHHHHHccCCHHHHHHHHHHHHHcC----CCCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHH
Q 048794 89 -TYS-ALMVAAGKRRNIKTVMNLLEEMERLG----LRPNVYTFTIC-IRILGRAGKIDEAYRILKRMDDEG---CGPDVV 158 (967)
Q Consensus 89 -~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 158 (967)
... .++..+.+.+. ..|...+++..+.- ..+-...+..+ +..+...+++..|.+.++.+...- ..+...
T Consensus 100 ~~~~~ll~~i~~~~~~-~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNP-KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 112 22333333333 33777776655431 11112222222 222223367777777777665431 133333
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHHhCC---------CCCCHhhHHHHHHHHH--ccCCHHHHHHHHHH
Q 048794 159 TYTVLIDALC--TAGRLDQAKEIFLKMKASS---------HQPDQVTYITLLDKFS--DCGNIEVVKEFWSQ 217 (967)
Q Consensus 159 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~ 217 (967)
++-.++.+.. +.+..+++.+..+.+.... ..|...++..++..++ ..|++..+.+.+++
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444333 4455566666665552211 1234445555555543 44555555444433
No 344
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.27 E-value=28 Score=31.43 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=42.6
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 75 YKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCG 154 (967)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (967)
.+.+...+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|..+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH---
Confidence 33344455555555666666666666554443332 23333333332222221111 1222233333333321
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 155 PDVVTYTVLIDALCTAGRLDQAKEIFLKM 183 (967)
Q Consensus 155 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 183 (967)
=...+..++..+...|++-+|.++....
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0013445555566666666666665554
No 345
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.87 E-value=1e+02 Score=37.53 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=84.0
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHhCCCCCCHHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVE-TACELFKQMIKGGIRPDLKSYSVL 829 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~p~~~~~~~l 829 (967)
++..+-...+.++.+.+..+ .+..++. .++..+....+.++...+..+ .+...+.++.+ .++.......
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~----~l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA 795 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVE----SVAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAA 795 (897)
T ss_pred CCHHHHHHHHHHHhcccCcH----HHHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHH
Confidence 33334444445555544322 2223333 345566555666655554432 23455555554 4566666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMV 909 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 909 (967)
+..+...|..+.+...+..+++ +++..+....+.++...+. +++...+..++ -.|+..+-..-+.+|.+.+.-
T Consensus 796 ~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L---~D~~~~VR~~A~~aL~~~~~~ 868 (897)
T PRK13800 796 LAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEAL---TDPHLDVRKAAVLALTRWPGD 868 (897)
T ss_pred HHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHh---cCCCHHHHHHHHHHHhccCCC
Confidence 7777777765555455555554 3455556666677766665 45666666665 345666666666666665333
Q ss_pred HHHHHhhcCCCc
Q 048794 910 EEARKLAGGNCF 921 (967)
Q Consensus 910 ~~A~~~~~~~l~ 921 (967)
..+...+.++++
T Consensus 869 ~~a~~~L~~al~ 880 (897)
T PRK13800 869 PAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
No 346
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.18 E-value=1e+02 Score=37.01 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 048794 228 VTYTIFVDALCKVG--NVEEAFSILDLMRG 255 (967)
Q Consensus 228 ~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 255 (967)
.....++..|.+.+ .++.++....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44456667777776 66777777766664
No 347
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.15 E-value=24 Score=37.07 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=30.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL-GRSGRIEEALSLFDEMK 885 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 885 (967)
+..+.+.|-+..|+++.+-+.+.+...|+......++.| .+.++++--+++++...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 445556666666666666666544332454444445544 34555555555555543
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.93 E-value=2.4 Score=27.51 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
.+++.++.+|...|++++|+.++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888999999888888765
No 349
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.52 E-value=0.76 Score=28.74 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHh--hcCCCcCCCC
Q 048794 896 YNSLILNLGRAGMVEEARKL--AGGNCFVQPS 925 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~--~~~~l~~~p~ 925 (967)
+..++..+...|++++|+++ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44455555555555555555 3244444443
No 350
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.24 E-value=90 Score=35.55 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=36.6
Q ss_pred HccCCHHHHHHHHHHHHhCCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHH
Q 048794 203 SDCGNIEVVKEFWSQMVADGYAA---DVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVE 279 (967)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 279 (967)
.+.+.+++|...-+..... .+ ....+...+..+...|++++|-...-.|... +...|...+..+...++..
T Consensus 367 l~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 3444555555544433221 22 2334555566666666666666666666543 5555555555555554443
No 351
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=83.09 E-value=1.1e+02 Score=36.65 Aligned_cols=60 Identities=8% Similarity=-0.003 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhh
Q 048794 523 VKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDL 583 (967)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 583 (967)
+++|+.-|+.+.. .+.-+--|...+-.|.+.|++++-++.+.-++++.+.+|....+.+-
T Consensus 535 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (932)
T PRK13184 535 FTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH 594 (932)
T ss_pred HHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 3445555555543 23334445555556667777777777777777777777766554443
No 352
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.97 E-value=1.2e+02 Score=36.91 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=140.7
Q ss_pred CCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHH
Q 048794 610 RDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLL 689 (967)
Q Consensus 610 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 689 (967)
+++.++...+..+.+.+.. .+...+.+.+. .++..+....+..+.+.+........+..+++. ++..+-...
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-GFGPALVAALG----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-hHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 3344455555555555543 34444444432 233334444444443332221122333344432 444444444
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCH
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRL 769 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 769 (967)
+..+...+..+ . ..+-+++. .+|.......+.++...+..+. +..++. +++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~-~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-A-ALFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-H-HHHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55554433211 1 23333333 3455555556666665554322 222332 44555666666777776654
Q ss_pred H-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 770 E-EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 770 ~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
+ .+...+..+.+ .+|..+....+..+...|..+.+...+..+++ .++..+...-+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 3 24566666665 46778888888888888876666566777775 4666666667777777765 567777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 849 LKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 849 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
+++ +|+..+....+.++.+.+....+...+..+++ .++..+-.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~ 888 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRA 888 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHH
Confidence 775 56777777778888776434567777777773 44554433
No 353
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.82 E-value=49 Score=37.10 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=57.0
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 799 GKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGR-VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
...+..+.|+.-|+++-+ +.|....-.+++..+...|+ ++...++-+ .-..|...+++.|..++-
T Consensus 298 tDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~------------IgmkLn~LlgrKG~lekl 363 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQ------------IGMKLNSLLGRKGALEKL 363 (1226)
T ss_pred cchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHH------------HHHHHHHHhhccchHHHH
Confidence 344455666666666665 46654444444444443332 222211110 011233345666666665
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 878 LSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++|+-.- +..+..-.+++.+|++..+..++++|..++.
T Consensus 364 q~YWdV~~-------------y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 364 QEYWDVAT-------------YFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHHHhHHH-------------hhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 55544332 2234445678999999999999999988875
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.38 E-value=75 Score=34.07 Aligned_cols=91 Identities=8% Similarity=-0.019 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHH---HhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHH
Q 048794 476 NTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG---LVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVV 552 (967)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 552 (967)
..+++-+...|-++.|...+..+.... +++...+...+.. ...+| ...++.+|+.+......++..|......-.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 345555566666677777776666552 3444555544443 22333 555666666666555566666655554444
Q ss_pred hcCChhHHHHHHHHHH
Q 048794 553 KDGQIEDAFRLAKCSI 568 (967)
Q Consensus 553 ~~~~~~~A~~~~~~~~ 568 (967)
..|..+.+-.++-+++
T Consensus 542 ~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAM 557 (568)
T ss_pred cCCCcccccHHHHHHH
Confidence 5555555555554444
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.27 E-value=3.1 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHhhcCcHhHHHHHHHHHHhhcC
Q 048794 512 TIIYGLVKEQRVKDAIWFFHQMRKWLY 538 (967)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (967)
.++.++.+.|++++|...|+++.+..|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344555556666666666666665444
No 356
>PRK12798 chemotaxis protein; Reviewed
Probab=81.72 E-value=73 Score=33.49 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHhhccCCCCCCHHHHHHHHHH-HhhcCcHhHHHHHHHHHHhhcCCC---hhHHHhHHHHHHhcCChhHHH
Q 048794 486 EEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG-LVKEQRVKDAIWFFHQMRKWLYPD---HITLCTLLPGVVKDGQIEDAF 561 (967)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 561 (967)
|+.+++.+.+..+.....++....+-.|+.+ .....+...|+++|+..+=..|.. ...+..-+....+.|+.+++.
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~ 205 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFE 205 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHH
Confidence 4555555555555444433333333333333 223344555555555544333321 122222233334455555555
Q ss_pred HHHHHHHhhcCCCc-chhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHH
Q 048794 562 RLAKCSIYQIGTRA-ERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFT 639 (967)
Q Consensus 562 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 639 (967)
.+..+.+.+....+ -..++...+..+.......+...+...+..-....-..+|..+++.-...|+.+-|...-.+..
T Consensus 206 ~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 206 ALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 55555554433222 2233333333332222222222222222211222223456666666677777766666665554
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.94 E-value=2.5 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 048794 862 NFMINGLGRSGRIEEALSLF 881 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~ 881 (967)
..++.++...|++++|...+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444555555555554444
No 358
>PRK12798 chemotaxis protein; Reviewed
Probab=80.54 E-value=80 Score=33.21 Aligned_cols=199 Identities=13% Similarity=0.038 Sum_probs=115.3
Q ss_pred HccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhC--CCCCChhcHHHHHHHHHcCCCHH
Q 048794 694 GKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG-LVKSNSIDKAMDLFYNLVSG--GFSPTPCTYGPLIDGLSKSGRLE 770 (967)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 770 (967)
.-.|+..++.+.+..+.....++....+..++.+ .....++..|+..|+.+.-. |.--+......-+....+.|+.+
T Consensus 123 Y~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 123 YLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred HHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 3457778887777776655445555555555544 34456778888888776543 11112234555556667788888
Q ss_pred HHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 048794 771 EAKKLFEEMLDYGCKPNCV---IYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHY 845 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 845 (967)
.+..+-.+.... +..+++ .+..+...+.+..+-. -.+.+..++.. .+|+ ...|..+++.-.-.|+.+-|.-.
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 877766666553 222333 2333444444443211 22335555554 4555 45777778877888999888888
Q ss_pred HHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 846 FEELKLNGLDA---DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 846 ~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
-+++....-.. ......+-+-+-.-..++++|.+.+..+....+.+....
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHH
Confidence 88877532111 122222222333456678888888888775556666544
No 359
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.48 E-value=12 Score=29.64 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 048794 70 EALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEME 114 (967)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (967)
++.+-++.+...++.|+..+..+.+++|-+.+++..|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455666666666777888888888888888888888888887766
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.46 E-value=2.6 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHhhc
Q 048794 897 NSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 897 ~~l~~~~~~~g~~~~A~~~~~ 917 (967)
..++.++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555555555555555443
No 361
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.31 E-value=18 Score=34.35 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 721 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
+....+++...|++.++++....++.. .+.+..+|...+.+....-+..+|..-|..+++.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344455666667777777766666665 2445556666666666666666666666666664
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.11 E-value=63 Score=31.74 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=25.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+.+++..|+|.+++.+.-+-....-+-.+++...=+-.|.+.|++....++-...+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34555556666655554433321111122223322334556666655555555555
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.99 E-value=29 Score=37.75 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 88 KTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDAL 167 (967)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (967)
...+.+++.+-++|..++|+.+- +|..- -.....+.|+++.|.++..+.. +..-|..|..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 35566666676777666654432 22211 1234457788888877766543 556788888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048794 168 CTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAF 247 (967)
Q Consensus 168 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 247 (967)
.+.+++..|.+.|..... +..|+-.+...|+.+....+-....+.|.. | ...-+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHH
Confidence 888888888888877654 345666667777776665555555544421 2 2233456678888877
Q ss_pred HHHHHH
Q 048794 248 SILDLM 253 (967)
Q Consensus 248 ~~~~~~ 253 (967)
+++..-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 776553
No 364
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.76 E-value=1.5 Score=45.72 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=77.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPDLKS-YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR 873 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 873 (967)
+.-....++++.|+.+|.++++ ..|+... +..-+.++.+.+++..|+.-+.++++.. +.-..+|..-+.++.+.++
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 4445677899999999999999 5887544 4455688899999999999999999854 2245577777888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048794 874 IEEALSLFDEMKKRGISPDLYTYNSL 899 (967)
Q Consensus 874 ~~~A~~~~~~~~~~~~~~~~~~~~~l 899 (967)
+.+|...|+.... +.|+.......
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHH
Confidence 9999999999886 55555443333
No 365
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.72 E-value=19 Score=36.93 Aligned_cols=126 Identities=11% Similarity=0.013 Sum_probs=74.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD--------LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGLDADTISYNFMIN 866 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 866 (967)
.++++.+|.++-+..+..-..-+ ...|..+..+|...|+...-...+...+. ++........+.|.+
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 44566666665555433101111 23445555566667776666666555442 121223445677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPD------LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.|...+.++.|.....+.. .|.. ...++-++..-...++|+.|.+++-.++.+.|++..
T Consensus 218 ~yL~n~lydqa~~lvsK~~---~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV---YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHhhhHHHHHHHHHhhccc---CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 8888888888888877764 2211 122334455555668889999999999988888655
No 366
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.50 E-value=4.3 Score=42.64 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=51.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC
Q 048794 725 ISGLVKSNSIDKAMDLFYNLVSGGFSPTP-CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTG 802 (967)
Q Consensus 725 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 802 (967)
+......+.++.|++.+.+++.. +|+. ..+..-+.++.+.+++..|+.=..++++. .|+.. .|..=+.++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 33444556666666666666664 2322 23334445666666666666666666654 23322 4444455555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH
Q 048794 803 DVETACELFKQMIKGGIRPDLKSY 826 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~~~~~ 826 (967)
.+.+|+..|+.... +.|+....
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHH
Confidence 66666666666555 45654433
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.34 E-value=52 Score=32.75 Aligned_cols=82 Identities=18% Similarity=0.143 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 822 DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
+...+..++..|.+.|++.+|..+|-.. -+++...+..+.......|...++--.+-+ .+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R---------------aVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEADLFIAR---------------AVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HHHHHHH---------------HHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcchhHHHHH---------------HHH
Confidence 4567788889999999998888886421 122333332233333334443333222222 223
Q ss_pred HHHhcCCHHHHHHhhcCCCcC
Q 048794 902 NLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 902 ~~~~~g~~~~A~~~~~~~l~~ 922 (967)
.|...|+...|...++..++.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 455567777777766555444
No 368
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.88 E-value=24 Score=28.39 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 420 EAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDH 466 (967)
Q Consensus 420 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 466 (967)
+..+-++.+...++.|.+....+.+.+|.+-+++..|.++++....+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44445555555666777777777777777777777777777766654
No 369
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.80 E-value=17 Score=36.36 Aligned_cols=94 Identities=19% Similarity=0.103 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKG-GIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMI 865 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 865 (967)
.|-.=++-|.+.+++..|...|.+.++. .-.|+ ...|.+-+.+-...|++..|+.-..+++.. +| ...+|..=+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 4555566666666777777777776653 22333 345566666666667777777666666653 34 334555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048794 866 NGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~ 885 (967)
.++....++.+|....+..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 66666666666666665554
No 370
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.58 E-value=9.3 Score=26.56 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 048794 862 NFMINGLGRSGRIEEALSLFDEMKKRGISPDLY 894 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 894 (967)
..++-++.+.|++++|.+..+.+++ ++|+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 3455556666666666666666664 455543
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.51 E-value=7.8 Score=29.32 Aligned_cols=49 Identities=8% Similarity=0.214 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
..++.++|+..|+++++.-..|. -.++-.++.+|+..|++.+.+++...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888888877522222 13455667777888888877766543
No 372
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.49 E-value=73 Score=31.68 Aligned_cols=64 Identities=17% Similarity=0.363 Sum_probs=35.3
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 188 HQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVAD-GYAADVVTYTIFVDALCKVGNVEEAFSILD 251 (967)
Q Consensus 188 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (967)
..++..+....+..++..+++....++|...... ++..|...|..+++.....|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555556666666666666666555444 444455556666666666666554444443
No 373
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.04 E-value=6.6 Score=38.30 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=53.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 868 LGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..+.|+.++|..+|+.++.. -|.++.++..++......++.-+|.+.|-+++.++|.|..+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal-aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL-APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhc-CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 45789999999999999864 34456899999999999999999999999999999999986
No 374
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.54 E-value=34 Score=27.23 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 048794 420 EAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLL 479 (967)
Q Consensus 420 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (967)
++.+-++.+...++.|++....+.+.+|.+-+++..|.++++....+ +..+..+|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 44555555556666777777777777777777777777777766543 222334454444
No 375
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.24 E-value=17 Score=35.93 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHh
Q 048794 152 GCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASS---HQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVV 228 (967)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 228 (967)
|.+.+..+-..++..-.+...++.+...+-+++... ..|+. +-.+.++.+.+ -+++++..++..-++.|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444555555666655556677777777777765421 11111 11222333322 35667777777777788888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 229 TYTIFVDALCKVGNVEEAFSILDLMRGE 256 (967)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 256 (967)
+++.+++.+.+.+++.+|..+...|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888777666544
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.17 E-value=1.6 Score=43.29 Aligned_cols=119 Identities=19% Similarity=0.254 Sum_probs=84.8
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 841 (967)
....|.++.|++.+..++..+ ++....|..-++++.+.+++..|++-+...++ +.||. .-|-.-+.+....|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 345688888888888888764 34556777778888888888888888888887 56764 445455666667788999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 842 ALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 842 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
|...+..+.+.++.+... ..+-.+.-+.+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHH
Confidence 988888888866555433 3345556666666666666666663
No 377
>PRK10941 hypothetical protein; Provisional
Probab=77.03 E-value=5.9 Score=39.25 Aligned_cols=61 Identities=16% Similarity=-0.064 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
...++-.+|.+.++++.|+.+.+.++... +.++.-+.-.+-+|.+.|.+..|..-++..++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34556667777777777777777777643 33454455567777777777777777777764
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.98 E-value=18 Score=39.11 Aligned_cols=114 Identities=12% Similarity=-0.067 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRIL 132 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (967)
.+.|...-.+.-.|+...|..++.........-+....-.|...+.+.|...+|..++.+..... .....++..+.+++
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33343333344567888888888877654433344455666677778888888888888877665 34556677788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 133 GRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
....+++.|++.|++..+.. +.+..+-+.|...-|
T Consensus 687 l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 88888888888888877653 445555666655444
No 379
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.92 E-value=4.6 Score=40.32 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=46.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 048794 730 KSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETAC 808 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~ 808 (967)
..|.+++|++.|..++..+ ++....|...+.++.+.++...|++-+..+++. .||.. .|-.-..+....|+|++|-
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4455666666666665542 333344555555566666666666666666553 33433 2333333344456666666
Q ss_pred HHHHHHHhCCCCC
Q 048794 809 ELFKQMIKGGIRP 821 (967)
Q Consensus 809 ~~~~~~~~~~~~p 821 (967)
..+..+.+.++.+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666665544433
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.67 E-value=7.1 Score=29.53 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=19.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDAD--TISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
..++.++|+..|+++++...++. ..++-.++.+|...|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554211111 11222334444555555544443
No 381
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.65 E-value=1.5e+02 Score=34.15 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHh--
Q 048794 408 LIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHG-CFPNTVTFNTLLHCLCK-- 484 (967)
Q Consensus 408 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 484 (967)
....+.-+|.++.|.+.+-+.. ....+...+...+..| |-+......-..+.... -.|...-+..++..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 3455566788888888776611 1123444444333332 21111111112222111 01111345556666554
Q ss_pred -cCCHHHHHHHHHhhccC
Q 048794 485 -NEEVDLAMKMLYEMTPR 501 (967)
Q Consensus 485 -~g~~~~A~~~~~~~~~~ 501 (967)
..+..+|.+++--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 45677777777666554
No 382
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.65 E-value=1.1e+02 Score=32.80 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=44.9
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 84 KPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGK-IDEAYRILKRMDDEGCGPDVVTYT 161 (967)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~ 161 (967)
..|...|...+.-|-+.+.+...-.+|.+|...+ |.++..|..........+. ++.|+.+|-+....+ +.+...|.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWK 178 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHH
Confidence 4466666666666666666777777777777654 4455555544444443333 777777776666543 33444443
No 383
>PRK10941 hypothetical protein; Provisional
Probab=76.18 E-value=20 Score=35.70 Aligned_cols=74 Identities=9% Similarity=-0.046 Sum_probs=51.0
Q ss_pred HHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhh
Q 048794 511 NTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLV 584 (967)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 584 (967)
+.+-..|.+.++++.|....+.+....|.++.-+..-+-.|.+.|.+..|..-++..++..+..++.......+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34445566777777777777777777777777777777777777777777777777777766666655444433
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.90 E-value=5.9 Score=26.20 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048794 864 MINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
|+.+|...|+.+.|.+++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45555555555555555555553
No 385
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.65 E-value=22 Score=33.15 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=43.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 048794 759 LIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDC 832 (967)
Q Consensus 759 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~ 832 (967)
.+..+.+.+.+.+|+...++-.+.. +.|......+...++-.|+|++|+.-++-+-. ..|+ ...|..++.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHHH
Confidence 3445556667777777776666553 23555666667777777777777777776655 2343 3455555544
No 386
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=74.72 E-value=48 Score=27.59 Aligned_cols=87 Identities=24% Similarity=0.224 Sum_probs=41.4
Q ss_pred hccCCHHHHHHHHHHHHh--CCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCH-H--
Q 048794 799 GKTGDVETACELFKQMIK--GGIRPD---------LKSYSVLVDCLCMVGRVDDALHYFEELKL----NG-LDADT-I-- 859 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~--~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~-~-- 859 (967)
...|.+++|-.-++++.+ ..++|. ...+..|..++...|++++++.-...++. .| +..+. .
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 345666776666666544 223331 12234455566666777766666666552 11 11121 1
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 860 --SYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 860 --~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+...-+.++...|+.++|...|+.+.
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 12223344556666666666666554
No 387
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.45 E-value=5.4 Score=23.35 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=10.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
..++.++...+++++|...+++.+
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444444
No 388
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.95 E-value=94 Score=30.52 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=75.8
Q ss_pred hHHHHHHHHhhccHHHHHHHHH---HHHHhcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCcCH-----hh
Q 048794 615 VVPIIKLFCRQKKALAAKDLFV---KFTENLGVTSTLEMYNYLIHGLL-EVHATEMGLDLFTTMKNAGCAPDI-----ST 685 (967)
Q Consensus 615 ~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-----~~ 685 (967)
...+...|...|+...-.+... +.+.+...+..+.....++.... ....+++-+.+....++-....+- ..
T Consensus 48 vlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~L 127 (421)
T COG5159 48 VLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLEL 127 (421)
T ss_pred HHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666555444442 22233233333444444444333 333455555555554432111110 11
Q ss_pred HHHHHHHHHccCChHHHHHHHHHH----HhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCChhcH
Q 048794 686 YNLLLDGYGKSGRVEELLKLYEEM----SFRGCKPNTISHNIVI-SGLVKSNSIDKAMDLFYNLVSG----GFSPTPCTY 756 (967)
Q Consensus 686 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~ 756 (967)
-..++..+.+.|.+.+|+.+...+ .+.+-+++..+...+- .+|....+...+..-+..+... --||.....
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~ 207 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQ 207 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHH
Confidence 134566778888888888765543 3334345544333222 2344444444444333332221 112222222
Q ss_pred HHHHH--HHHcCCCHHHHHHHHHHHHH
Q 048794 757 GPLID--GLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 757 ~~l~~--~~~~~g~~~~A~~~~~~~~~ 781 (967)
..+.. ..+.-.++..|..+|=++.+
T Consensus 208 lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 208 LDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHHhccceeeccccchhHHHHHHHHHh
Confidence 22221 23444567777777766665
No 389
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.75 E-value=14 Score=29.66 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 048794 70 EALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERL 116 (967)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (967)
+..+-+..+...++.|+..+..+.+++|.+.+++..|.++|+-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555566666667777777777777777777777777777777643
No 390
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.18 E-value=1.7e+02 Score=33.22 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048794 723 IVISGLVKSNSIDKAMDLFYNLVSGGFSPTP--CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK 800 (967)
Q Consensus 723 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 800 (967)
.++-++..-|.-++|-.+.+++.... +|.. .-...++.+|+..|+.....+++.-+... +..|..-...++..+.-
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeE
Confidence 34445566677777888887777652 2221 22345677788888877766666665553 22233344444445555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 801 TGDVETACELFKQMIKGGIRPDLK--SYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
..+++....+..-+.+. ..|.+. +-..|+-+|+-.| ..+|+.+++.+.+
T Consensus 584 ~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred ecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 66777777776665553 556543 3334455555444 4578888887765
No 391
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.45 E-value=26 Score=34.13 Aligned_cols=28 Identities=4% Similarity=0.042 Sum_probs=12.0
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCC
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRGCKPN 717 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 717 (967)
+....+.|++++.+.+++++...+...+
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt 35 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELT 35 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCC
Confidence 3444444555555555555544433333
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.43 E-value=1.3e+02 Score=31.64 Aligned_cols=130 Identities=14% Similarity=0.034 Sum_probs=72.1
Q ss_pred hhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcc
Q 048794 535 KWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSV 614 (967)
Q Consensus 535 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (967)
...|-...++.++...+..+|+.+.|.+++++++-.........+-. +..
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~-----~~~------------------------- 83 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP-----FRS------------------------- 83 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh-----hhc-------------------------
Confidence 34778888888999999999999999998888765432111110000 000
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 048794 615 VVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYL---IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLD 691 (967)
Q Consensus 615 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 691 (967)
-...|+ +.-......+...|.++ +..+.+.|-+..|.++.+-+..-++..|.......++
T Consensus 84 -------~~~~g~----------~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID 146 (360)
T PF04910_consen 84 -------NLTSGN----------CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFID 146 (360)
T ss_pred -------ccccCc----------cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHH
Confidence 000000 00000112333333333 4456677788888888877777654445555555555
Q ss_pred HH-HccCChHHHHHHHHHHHh
Q 048794 692 GY-GKSGRVEELLKLYEEMSF 711 (967)
Q Consensus 692 ~~-~~~g~~~~A~~~~~~~~~ 711 (967)
.| .+.++++--+++++....
T Consensus 147 ~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 147 YYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCCHHHHHHHHHhHhh
Confidence 54 456677767777666543
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.88 E-value=42 Score=32.87 Aligned_cols=118 Identities=11% Similarity=0.021 Sum_probs=68.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-----C-CCC-------hhhHHHHHHHHHhcCcHHHHHHHHHHHHHc--CCCCCHhhH
Q 048794 26 ALSLKGGLRRASFALEKMRAAG-----F-VLN-------AYSYNGFIHFILQSGFCREALAVYKRVVSE--GIKPSLKTY 90 (967)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~-----~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 90 (967)
-+.-..|+..|++..++-.+.- . .+. ......-|++++..++|++++.+.-+.... .++|.+.-.
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL 123 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 3344557777777776644321 0 111 012345678888888888888887776542 244444333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 048794 91 SALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRIL-----GRAGKIDEAYRIL 145 (967)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~ 145 (967)
..+ .|.+.+....+.++-....+....-+...|..++..| .-.|.+++|+++.
T Consensus 124 CIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333 3677888887777777776543222333355555444 3458888887776
No 394
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.81 E-value=1e+02 Score=29.95 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=31.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTS----------TLEMYNYLIHGLLEVHATEMGLDLFTTMK 675 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 675 (967)
..++..|+..+.+.+-...+.++........ -...|..-+.+|...++...-..+|++.+
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 3456666666666666666665544332211 12234444555555555555555555544
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.80 E-value=43 Score=29.36 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=23.7
Q ss_pred CHhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 048794 86 SLKTYSALMVAAGKRRN-IKTVMNLLEEMERLGLRPNVYTFTICIRILGR 134 (967)
Q Consensus 86 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (967)
+...+++++.+...... --.+..+|..+.+.+.+.+...|..++.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33455555555544333 33444455555544445555555555555433
No 396
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.48 E-value=1.6e+02 Score=31.33 Aligned_cols=121 Identities=13% Similarity=0.042 Sum_probs=79.1
Q ss_pred HhcCChhHHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHH
Q 048794 28 SLKGGLRRASF-ALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTV 106 (967)
Q Consensus 28 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (967)
...|++..|.+ +++.++...--|+.... ....+...|+|+.+...+...-.. +-....+...+++...+.|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 45677776664 44444444333444433 344466678999888887766432 234455778888888899999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048794 107 MNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEG 152 (967)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 152 (967)
.++-+-|....++ +..+........-..|-+|++...++++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9988888776654 34444444444556677889988888887653
No 397
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.30 E-value=2.1e+02 Score=32.66 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHH
Q 048794 52 AYSYNGFIHFILQSGFCREALAVY 75 (967)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~A~~~~ 75 (967)
+.-|+ .+..++-.|.+++|..++
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHH
Confidence 45554 444555556666666665
No 398
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.05 E-value=2.3e+02 Score=32.87 Aligned_cols=54 Identities=4% Similarity=-0.111 Sum_probs=31.2
Q ss_pred HHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHH
Q 048794 514 IYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCS 567 (967)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 567 (967)
+......++++.+...+..|...........+-+++++...|+.++|...++++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333445666666666666655444444555556666666666666666666654
No 399
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.63 E-value=1.5e+02 Score=30.72 Aligned_cols=118 Identities=8% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHH
Q 048794 104 KTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCT---AGRLDQAKEIF 180 (967)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 180 (967)
+.-+.+++++.+.+ +.+...+..+++.+.+..+.+...+.++++.... +.+...|...+..... .-.++...++|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 33445555555443 3455555555555555555555555555555442 2344555555544332 12333444444
Q ss_pred HHHHh------CCC------CCC--H---hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 048794 181 LKMKA------SSH------QPD--Q---VTYITLLDKFSDCGNIEVVKEFWSQMVADGY 223 (967)
Q Consensus 181 ~~~~~------~~~------~~~--~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 223 (967)
.+... .+. .++ . ..+..+...+...|..+.|..+++.++..++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33221 000 011 1 1233334445577888888888877776654
No 400
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=68.60 E-value=61 Score=39.32 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=104.8
Q ss_pred HHHHhcCCHHHHHH------HHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHH-------HCCCCCCHHHHH
Q 048794 726 SGLVKSNSIDKAMD------LFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML-------DYGCKPNCVIYN 792 (967)
Q Consensus 726 ~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~ 792 (967)
......|.+.+|.+ ++.+....-.+.....|..++..+.+.|+.++|+..-.++. ....+.+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33444555665555 55544443345556678889999999999999987765542 221122334677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC--CH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKG-----G-IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN-----GLDA--DT 858 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~--~~ 858 (967)
.+.......++...|+..+.+.... | ..|. ......+..++...++++.|+++.+.+.+. +.++ ..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 7776666777888899888887651 2 2444 355566666667778999999999988742 2122 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
..+..+++.+...+++..|....+..
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 56777888888888888877766544
No 401
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.00 E-value=57 Score=25.96 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGR 873 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 873 (967)
....+.++..+...|++++|++.+-.++..+... +...-..++.++.-.|.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4566666666666677777766666666533222 23344445555555554
No 402
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.98 E-value=41 Score=33.44 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=72.7
Q ss_pred HcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 048794 45 AAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEG---IKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPN 121 (967)
Q Consensus 45 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 121 (967)
..|.+.+..+...++.+.-.....+.+...+=++..+. ..|+. +....++ ++-.-+.+.++.++..=...|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~ir-lllky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHH-HHHccChHHHHHHHhCcchhccccc
Confidence 44555566777777777776778888888887776532 11111 1222223 3344466788888888888888899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 122 VYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
.+++..++..+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999988888887776543
No 403
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.62 E-value=1e+02 Score=31.16 Aligned_cols=97 Identities=24% Similarity=0.327 Sum_probs=78.5
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 048794 753 PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSV 828 (967)
Q Consensus 753 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ 828 (967)
...|-.=++-|.+..++..|...|.+.++... .|| .+.|++=+.+..--||+..|+.-..+++. +.|. ...+..
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhh
Confidence 35677778889999999999999999886532 333 45788888887788999999999999988 6887 467777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048794 829 LVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 829 l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
=+.++....++++|..+.++...
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Confidence 78888899999999999887654
No 404
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.17 E-value=49 Score=26.56 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
+...|+|++|..+.+.. +.||...|..+.. .+.|-..++..-+.++..
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 44445555555444433 1344444444322 233444444444444433
No 405
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.07 E-value=57 Score=35.71 Aligned_cols=132 Identities=11% Similarity=0.068 Sum_probs=73.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048794 19 TYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAG 98 (967)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (967)
.-+.+.+-+...|-.++|+++ .+|+.. -..+.++.|+++.|.++..+. .+..-|..|-++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 344556666666666666432 223322 223455667777776665544 23445667777777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048794 99 KRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKE 178 (967)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 178 (967)
..+++..|.+.|....+ +..++-.+...|+-+....+-....+.| ..+. ...++...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHH
Confidence 77777777777665443 3344445555666665555555555544 2221 2223455677777776
Q ss_pred HHHHH
Q 048794 179 IFLKM 183 (967)
Q Consensus 179 ~~~~~ 183 (967)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 66554
No 406
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.33 E-value=15 Score=34.17 Aligned_cols=116 Identities=18% Similarity=0.092 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
..-+.-+.+.+..++|+...+.-++.+ +.+..+...+.+.|+-.|++++|..-++-+-. +.|+...-..+...+.++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHHH
Confidence 344566778899999999998877653 33555677789999999999999999988775 566654444443333333
Q ss_pred CCHHHHHHhhcCCCcCCC--Ccccc--ccceeeeccCCCccccc
Q 048794 907 GMVEEARKLAGGNCFVQP--SEFVS--SELQVIYAENPRATSLS 946 (967)
Q Consensus 907 g~~~~A~~~~~~~l~~~p--~~~~~--~~l~~~~~~~g~~~~~~ 946 (967)
.....+. +..+..---| ..|+| ..++.+....+..-++.
T Consensus 82 ea~R~ev-fag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~ 124 (273)
T COG4455 82 EAARNEV-FAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEAR 124 (273)
T ss_pred HHHHHHH-hccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHH
Confidence 2211111 1112111111 22334 36777766666555533
No 407
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.22 E-value=90 Score=31.62 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=29.5
Q ss_pred hccCCHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 799 GKTGDVETACELFKQMIKG---GIRPDLKSY--SVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~---~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
.+.++.++|++.++++.+. ...|+...+ ...++++...|+..++.+.+....+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445667777777776542 234443333 3345555666666666666655543
No 408
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=65.07 E-value=9.2 Score=37.51 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH-HHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 855 DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNS-LILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
..|+..|...+.--.+.|-+.+--.++.+++.. -|.|.+.|-. ...-+...++++.+..++.+++.++|++|.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 345566665555555666677777777777753 3445566643 555666777888888888888888888876
No 409
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.21 E-value=14 Score=24.43 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=15.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 048794 22 TIFKALSLKGGLRRASFALEKMRAA 46 (967)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~ 46 (967)
.|.++|...|+.+.|+.+++.+...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3556666666666666666666644
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.83 E-value=41 Score=27.01 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=28.8
Q ss_pred hccCCHHHHHHHHHHHHh----CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 799 GKTGDVETACELFKQMIK----GGIRP----DLKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~----~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
.+.|++.+|++.+.+..+ .+..+ -..+...++.+....|++++|...++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355666666555555443 11111 012334456666667777777777777663
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.45 E-value=2.6e+02 Score=30.90 Aligned_cols=207 Identities=16% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhC-----------CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHH-------HCCCCCCHH
Q 048794 728 LVKSNSIDKAMDLFYNLVSG-----------GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML-------DYGCKPNCV 789 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ 789 (967)
+.....+++|...|.-+... ..+-...+...++..+..+|+.+.|..++++.+ ...+.|...
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred H----------------HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH--
Q 048794 790 I----------------YNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC-MVGRVDDALHYFEELK-- 850 (967)
Q Consensus 790 ~----------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-- 850 (967)
. ....+..+.+.|-+..|++..+-++.....-|+.....++..|+ +..+|+--+++++...
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred -HCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 851 -LNGLDADTISYNFMINGLGRSGR---IEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 851 -~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
....-|+-..-..|+..|.+... -+.|...+.++.+. -+.++..|...+.-..+----.--+..-..-+|+.
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~----~P~vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~ 483 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH----HPLVLSELLDELLLGDDALTKDLKFDGSSAENSEL 483 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh----CcHHHHHHHHhccCCchhhhhhhcccccccccccc
Q ss_pred cccccceeeecc
Q 048794 927 FVSSELQVIYAE 938 (967)
Q Consensus 927 ~~~~~l~~~~~~ 938 (967)
|...+|..+|+.
T Consensus 484 pal~~lv~lY~~ 495 (665)
T KOG2422|consen 484 PALMLLVKLYAN 495 (665)
T ss_pred hHHHHHHHHHHh
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.88 E-value=67 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 048794 54 SYNGFIHFILQSGFCREALAVYKRVVS 80 (967)
Q Consensus 54 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 80 (967)
-|..|+..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777778888888777765
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.68 E-value=3.7e+02 Score=32.08 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=14.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048794 18 STYLTIFKALSLKGGLRRASFALEKMRA 45 (967)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 45 (967)
+.|..|+-.|...|+.++|+++|...-.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 3444555555555555555555555443
No 414
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=59.42 E-value=2.2e+02 Score=29.49 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHH
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK---TGDVETACELF 811 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~ 811 (967)
+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.+++++... +-+...|...+..... .-.+.+...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34456667766663 3444556666666777777777777777777652 2245566666554332 22456666666
Q ss_pred HHHHh------CCC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048794 812 KQMIK------GGI------RPD-----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL 854 (967)
Q Consensus 812 ~~~~~------~~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 854 (967)
.+.+. .+. .|+ ...+..+...+...|..+.|...++.+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 66543 111 111 11223334445677888888888888877543
No 415
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=58.84 E-value=2.5e+02 Score=29.82 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 048794 440 YNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN 502 (967)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (967)
...|+.-|...|+..+|...++++--- .......+.+++.+.-+.|+-..-+.+++..-..+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 345677788888888888887776321 11245566777777777777777777777666554
No 416
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.78 E-value=52 Score=31.61 Aligned_cols=23 Identities=17% Similarity=-0.060 Sum_probs=16.6
Q ss_pred cCCHHHHHHhhcCCCcCCCCccc
Q 048794 906 AGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 906 ~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.++.+.|..++++++.++|+--+
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCCCh
Confidence 35677788888888888876544
No 417
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.45 E-value=2e+02 Score=28.65 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+...+..|...|.+.+|.++-++++..+ +-+...+..+...+...|+--.|.+.|+++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445667777788888888888877643 3355566677778888888777777776654
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.35 E-value=56 Score=26.25 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=38.5
Q ss_pred HhcCCHHHHHHHHHHHHHC---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 834 CMVGRVDDALHYFEELKLN---GLDAD-----TISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.+.|++.+|.+.+.+..+. ...+. ..+...++......|++++|...++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5679999998887776631 11222 23455677888999999999999999883
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.05 E-value=41 Score=26.72 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHhhHHHHHHHHHccCChHHHHHHHH
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP-DISTYNLLLDGYGKSGRVEELLKLYE 707 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 707 (967)
|.+......++..+...|++++|++.+-.++...... +..+-..++.++...|.-+....-|+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4455566666666666666666666666666553322 33344455555555555444443333
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.02 E-value=1.6e+02 Score=28.82 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc-cCChHHHHHHHHHH
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK-SGRVEELLKLYEEM 709 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 709 (967)
..++....+.+++++....++++...+...+..-.+.+..+|.. .|....+...+...
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 34556666778888888888888777655566655555555532 23334444444433
No 421
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=56.77 E-value=2e+02 Score=28.17 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHH---cCCCCCHHhHHHHHH-----HHHhcCCHHHHHHhhcCCC
Q 048794 874 IEEALSLFDEMKK---RGISPDLYTYNSLIL-----NLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 874 ~~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~l 920 (967)
.++|.+.|+.+.+ ..++|...+...|+- .|-..++.++|.++.++++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5577777777652 236676655544432 2224588888888777665
No 422
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=56.27 E-value=1.1e+02 Score=25.32 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 795 INGFGKTGDVETACELFKQMIKG-GIRPDLKSY-SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
+..+...||+-+|+++.++++.. |...+.... ..=+.++. +.+.... +|+...-..+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~te-n~d~k~~yLl-------- 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTE-NPDVKFRYLL-------- 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhcc-CchHHHHHHH--------
Confidence 44567889999999999998763 222222211 12233322 2233322 4555433322
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 873 RIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
.+.+.+.+.. ++.|+. ..+..++.-+...--|+++.+-.+++|..
T Consensus 62 ---~sve~~s~a~--~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAV--ELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHh--ccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3445566655 355555 44555666555566788888888877765
No 423
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.18 E-value=2.8e+02 Score=29.65 Aligned_cols=121 Identities=13% Similarity=0.067 Sum_probs=58.1
Q ss_pred HHcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 378 SKVGQVDEAVTLLSEMVEN-GCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKA 456 (967)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 456 (967)
...|++..|.+-+...... .-.|+...+ ........|+++.+...+...... +.....+..++++.....|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3455555555444443332 112332222 222344566666666665544321 122444555666666666666666
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 048794 457 IELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN 502 (967)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (967)
..+.+.|....+. ++.+........-..|-++++.-.++++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 6666666544322 33333333333334455566666666655544
No 424
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=55.14 E-value=4e+02 Score=31.06 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRPDLKSYSVLVDCLC-MVGRVDDALHYFEELKLNGLDADTI-SYNFMINGLGRSGRIEEALSLFD 882 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 882 (967)
..|...|.........+...+....+.... ..++.+.+..+|......+ ..+.. .|...+..-...|+...+..+++
T Consensus 443 ~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R 521 (881)
T KOG0128|consen 443 NHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYG-GGSIAGKWLEAINLEREYGDGPSARKVLR 521 (881)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCC-cchHHHHHHHHHhHHHHhCCchhHHHHHH
Confidence 444444444333212333334444455544 3577899999998877643 22222 45555555677799999999888
Q ss_pred HHHHcCCCCCH--HhHHHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 883 EMKKRGISPDL--YTYNSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 883 ~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
.+...-..|+. .++..+-..-...|.++.+....++.+
T Consensus 522 ~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 522 KAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVL 561 (881)
T ss_pred HHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhc
Confidence 88744344442 444444445555678887776666544
No 425
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.06 E-value=87 Score=26.46 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 048794 422 WEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLL 479 (967)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (967)
.+-++.....++.|++......+++|.+-+|+..|..+|+-...+ +.+....|..++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 334444555566777777777777777777777777777777654 333333444433
No 426
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=54.86 E-value=7.6 Score=34.40 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=25.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 048794 24 FKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYK 76 (967)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (967)
+..+.+.+....+...++.+...+...++..++.++..|++.+..+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433345555555555555544444444443
No 427
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.35 E-value=2.4e+02 Score=28.27 Aligned_cols=63 Identities=5% Similarity=0.104 Sum_probs=34.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 399 EPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDM-KLAPTVVTYNTLLSGLGKEGQVQKAIELFE 461 (967)
Q Consensus 399 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (967)
.++..+...++..++..+++..-++.+...... +...|...|..++......|+..-..+++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 444455555666666666666666665554433 333455556666666666666554444443
No 428
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.92 E-value=82 Score=26.61 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=24.1
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 048794 75 YKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMER 115 (967)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (967)
+..+..-++.|+..+....+++|-+.+|+..|.++|+-++.
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33333444566666666666666666666666666666553
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.08 E-value=3e+02 Score=28.99 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCCH
Q 048794 124 TFTICIRILGRAGKIDEAYRILKRMDDE--GCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASS---------HQPDQ 192 (967)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~ 192 (967)
.+.-+...|..+|+++.|++.|.+.+.. ..+.....|-.++...+..|+|.....+..+..+.. +++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4556778899999999999999996653 112344567777888888899988888777766541 23334
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHH
Q 048794 193 VTYITLLDKFSDCGNIEVVKEFWS 216 (967)
Q Consensus 193 ~~~~~ll~~~~~~~~~~~a~~~~~ 216 (967)
..+..|...+.+ ++..|.+.|-
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHH
Confidence 444445444433 5666655553
No 430
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.46 E-value=3e+02 Score=28.92 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHH--cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVS--EGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMER 115 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (967)
..+..+...|...|+...|++.|.+... .........|-.+|......|+|..+.....++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566677777778888888888777432 11123344566666666777777777666666554
No 431
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=51.83 E-value=8.9 Score=33.97 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFL 181 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 181 (967)
..+.+.+.++.+..+++.+...+...+....+.++..|++.+.++...++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344445555555555555544333445555555555555554455544444
No 432
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.53 E-value=33 Score=32.34 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 855 DADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.|++.++..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666666666654
No 433
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.20 E-value=4.3e+02 Score=30.29 Aligned_cols=189 Identities=16% Similarity=0.216 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCH----------hhHHHHHHHHHccCC
Q 048794 36 ASFALEKMRAAGFVL---NAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSL----------KTYSALMVAAGKRRN 102 (967)
Q Consensus 36 a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~ 102 (967)
-...+.+|+.+---| .+.+...++..|....+|+...++.+.+.+. |+. +.|...++.=-+.|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 335566777653333 3345556666777788888888888888763 322 123333333335677
Q ss_pred HHHHHHHHHHHHHcC--CCCcHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048794 103 IKTVMNLLEEMERLG--LRPNVYTFTICIRI---------LGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAG 171 (967)
Q Consensus 103 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 171 (967)
.+.|+...--+.+.. +.||.. ....+. |...+..+.|.++|++.-+. .|+...--.+...+...|
T Consensus 259 RakAL~~~l~lve~eg~vapDm~--Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMY--CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCcee--eeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Confidence 788887777776553 334432 222332 23446677788888887653 565554333333333333
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 048794 172 -RLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSIL 250 (967)
Q Consensus 172 -~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 250 (967)
.++...++ ..-| . .|-..+.+.|.++...++|+-. +| ..+-.-.+++.+|.+.-
T Consensus 335 ~~Fens~El----q~Ig-----m---kLn~LlgrKG~leklq~YWdV~----------~y---~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 EHFENSLEL----QQIG-----M---KLNSLLGRKGALEKLQEYWDVA----------TY---FEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhccchHHH----HHHH-----H---HHHHHhhccchHHHHHHHHhHH----------Hh---hhhhhhccCHHHHHHHH
Confidence 22322221 1111 1 1223345667777766666432 21 11222345666666666
Q ss_pred HHHHhC
Q 048794 251 DLMRGE 256 (967)
Q Consensus 251 ~~~~~~ 256 (967)
+.|-+.
T Consensus 390 e~mfKL 395 (1226)
T KOG4279|consen 390 EMMFKL 395 (1226)
T ss_pred HHHhcc
Confidence 666554
No 434
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=50.88 E-value=2.5e+02 Score=27.53 Aligned_cols=15 Identities=13% Similarity=0.064 Sum_probs=7.4
Q ss_pred cCCHHHHHHHHHHHH
Q 048794 836 VGRVDDALHYFEELK 850 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~ 850 (967)
.++.++|.++.+++.
T Consensus 184 ~~~~~~A~~lAk~af 198 (244)
T smart00101 184 LNSPDRACNLAKQAF 198 (244)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555544443
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.40 E-value=2e+02 Score=30.62 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=27.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHHHh
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV--IYNILINGFG--KTGDVETACELFKQMIK 816 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~ 816 (967)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556666666666666653 232222 3344444432 44456666666666554
No 436
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=50.08 E-value=1.5e+02 Score=24.64 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
+..+...|+.-+|+++.+++...
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~ 25 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISR 25 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 55678899999999999999864
No 437
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.06 E-value=1.5e+02 Score=28.85 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=64.3
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 048794 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDE 140 (967)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 140 (967)
.+...+++++|.+++-.- ++.| .--..++.++...|+...|..++....... .+......++.. ..+|.+.+
T Consensus 87 W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~E 158 (226)
T PF13934_consen 87 WLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTE 158 (226)
T ss_pred HHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHH
Confidence 357889999999888322 1111 122357778888899999999988764322 223333333434 77899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048794 141 AYRILKRMDDEGCGPDVVTYTVLIDALCTA 170 (967)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (967)
|...-+...+. .....+..++..+...
T Consensus 159 Af~~~R~~~~~---~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 159 AFSFQRSYPDE---LRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHHhCchh---hhHHHHHHHHHHHHHH
Confidence 99988887663 2355677777776643
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.00 E-value=1.2e+02 Score=26.08 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
++.+...|..... -.+-.-|..+-..|+..-+ ++.++|+.|...|+--. ...|...+..+...|++++|.++|+
T Consensus 49 Ler~~~~f~~~~~---Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 49 LERCIRKFKDDER---YKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHTTSGG---GTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhhHh---hcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHH
Q 048794 848 ELK 850 (967)
Q Consensus 848 ~~~ 850 (967)
..+
T Consensus 124 ~Gi 126 (126)
T PF08311_consen 124 LGI 126 (126)
T ss_dssp HHH
T ss_pred hhC
No 439
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.72 E-value=1.1e+02 Score=35.46 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLF 776 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 776 (967)
.++++.+.+.+... ..-.+++..+.+.|.++-|+...+ ++.+-. .....+|+++.|++.-
T Consensus 607 k~ydeVl~lI~ns~--------LvGqaiIaYLqKkgypeiAL~FVk---------D~~tRF---~LaLe~gnle~ale~a 666 (1202)
T KOG0292|consen 607 KKYDEVLHLIKNSN--------LVGQAIIAYLQKKGYPEIALHFVK---------DERTRF---ELALECGNLEVALEAA 666 (1202)
T ss_pred hhhHHHHHHHHhcC--------cccHHHHHHHHhcCCcceeeeeec---------Ccchhe---eeehhcCCHHHHHHHH
Confidence 45666655544322 122334444455666665554432 222222 2345678888887655
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048794 777 EEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA 856 (967)
Q Consensus 777 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 856 (967)
.++ .|..+|..|+..-..+|+.+-|+..|++..+ |..|.-.|.-.|+.++-.++.+.+... .
T Consensus 667 kkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r---~ 728 (1202)
T KOG0292|consen 667 KKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR---N 728 (1202)
T ss_pred Hhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---h
Confidence 443 2667888998888888898888888888654 333334445567777776666655432 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHhcCCHHHHHHhhcCCCc
Q 048794 857 DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN-LGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 857 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~l~ 921 (967)
|.... ...+ .-.|+.++-.++++.. |.-| +++. ...+|.-++|.++.++.-.
T Consensus 729 D~~~~--~qna-lYl~dv~ervkIl~n~---g~~~-------laylta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 729 DATGQ--FQNA-LYLGDVKERVKILENG---GQLP-------LAYLTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hhHHH--HHHH-HHhccHHHHHHHHHhc---Cccc-------HHHHHHhhcCcHHHHHHHHHhhcc
Confidence 22111 1111 2357777777666555 3333 2222 2235666777777776554
No 440
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.51 E-value=3.1e+02 Score=27.79 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC-CCC-C----HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYG-CKP-N----CVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
.++..|.+.++|+.|-..+.-+-..+ ... | ..++..++.+|...++..+|..+.++.
T Consensus 108 ~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 108 HLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45556666666666666655443211 110 1 124555666666666666666666554
No 441
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.16 E-value=1.1e+02 Score=32.58 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPDLK--SYSVLVDCLCM--VGRVDDALHYFEELKLN 852 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 852 (967)
...+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345889999999999999986 455543 45566666654 45688999999987753
No 442
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.97 E-value=40 Score=31.89 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=28.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
.+.++.+.|.++|.++++.- +.+...|..++....+.|+.+.|.+.|++.++
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 34455555666666665531 12344566666555566666666666666555
No 443
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.53 E-value=3e+02 Score=27.48 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 048794 159 TYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQM 218 (967)
Q Consensus 159 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 218 (967)
+++.....|..+|.+.+|.++.+..... .+.+...+..|+..+...||--.+..-++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445556677778888888877777664 2456666777777777777755554444443
No 444
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.13 E-value=3e+02 Score=27.29 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=18.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHH
Q 048794 444 LSGLGKEGQVQKAIELFEGMTDHGCFPNTVT 474 (967)
Q Consensus 444 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 474 (967)
.+-..+.+++++|+..+.++...|+..+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 3444556666666666666666665555443
No 445
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.20 E-value=5.2e+02 Score=29.77 Aligned_cols=153 Identities=14% Similarity=0.040 Sum_probs=89.6
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRGCKPNTI----SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
+-++.--|+-++|-.+.+++.... |+. -...+..+|+-.|+.....+++--+++. ...|..-...++..+.-
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVL 583 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeE
Confidence 334455566778888888887642 332 2355667777777766555555444432 34555555555566666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC--
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCV--IYNILINGFGKTGDVETACELFKQMIKGGIRPDL----KSYSVLVDCLCMVG-- 837 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g-- 837 (967)
..+.+....+.+-+.+. ..|... +-..++-+|+..|+ .+|+.+++.|.. .|.. .+...++-+.+++.
T Consensus 584 ~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~---D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS---DPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred ecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHhcccc
Confidence 77888888877777664 333332 33445555666666 788999999886 4432 23334444444443
Q ss_pred ---CHHHHHHHHHHHHH
Q 048794 838 ---RVDDALHYFEELKL 851 (967)
Q Consensus 838 ---~~~~A~~~~~~~~~ 851 (967)
++..-.+.|.+.+.
T Consensus 659 ~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 659 LCPKVNGFRKQLEKVIN 675 (929)
T ss_pred cCchHHHHHHHHHHHhh
Confidence 24455566666553
No 446
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.98 E-value=2.5e+02 Score=31.39 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048794 757 GPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV------IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL 829 (967)
Q Consensus 757 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 829 (967)
+.-+.-..+..++..+++.|..-... ++.|.. ....+.-+|....+.+.|.+++.++.+ ++|. ..+-..+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQLLM 434 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHHHHH
Confidence 33455567778888888888877653 222321 456677778888889999999999887 4554 3344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..+....|+.++|+.........-......... .-...|.+..-..+...+.
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~----l~~~~~~PTt~lsv~~~l~ 486 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDEKSTDALI----LAVAECKPTTDLSVQGLLM 486 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcccccchhH----HHHhcCCCchHHHHHHHHH
Confidence 566677788999998888776421111111111 1134566666566666554
No 447
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=45.87 E-value=44 Score=21.31 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+|..|+++-...++|++|..-|++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56667777777777777777777766
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.20 E-value=3.2e+02 Score=27.13 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=47.9
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----H
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLD----YGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPDL----K 824 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~ 824 (967)
.++..++..|++.++.+.+.+...+..+ .|.+.|.. +-..++..|..+.-.++-++..+.++++|-.=+. .
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Confidence 4455666666666666666655554433 33344433 3344455555555556666666666665432221 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
+| -+-.+....++.+|-.++-..+
T Consensus 196 ~Y--~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 196 VY--KGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HH--HHHHHHHHHhhHHHHHHHHHHh
Confidence 22 1222233445666666655544
No 449
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=3.2e+02 Score=27.13 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcCHh-hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 048794 643 GVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA----GCAPDIS-TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN 717 (967)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 717 (967)
|-.....++..++..|++.++.+.+.+...+..+. |.+.|+. +-..++-.|....-.++-++..+.+.+.|..-+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 33344556667777777777777777666655543 3333322 122334445555556777777777777664333
Q ss_pred hhhHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 718 TISHNIV--ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 718 ~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
....... +--+....++.+|-.++...+..-.......|...+.
T Consensus 190 RrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 190 RRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVR 235 (412)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHH
Confidence 2211111 1112344567777777766665422233334444443
No 450
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.99 E-value=45 Score=19.58 Aligned_cols=28 Identities=4% Similarity=-0.098 Sum_probs=18.1
Q ss_pred CcHhHHHHHHHHHHhhcCCChhHHHhHH
Q 048794 521 QRVKDAIWFFHQMRKWLYPDHITLCTLL 548 (967)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 548 (967)
|+.+.|..+|+++....|.+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566777777777776666666665544
No 451
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=44.84 E-value=5.7e+02 Score=29.89 Aligned_cols=203 Identities=10% Similarity=0.073 Sum_probs=104.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 048794 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC---TAGRLDQAKEIFLKMKASSHQPDQVTYIT 197 (967)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 197 (967)
+.....-++..+.+.|++++....-..|.+. .+.+...|...+.... ..+...++...|++....-..+..+....
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHH
Confidence 3444556777777888877766666666554 2556666766655433 34677777777777664433333222111
Q ss_pred -H----HHHHHccCCHHHHHHHHHHHHhC-CCCCcH-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 198 -L----LDKFSDCGNIEVVKEFWSQMVAD-GYAADV-----VTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYN 266 (967)
Q Consensus 198 -l----l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 266 (967)
. +..+.+.++++..+.+|.+.+.. |...+. ..|..+-..|...-..++...+|..-+..+ .|..+-+
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~~~ 268 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDTRG 268 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhhhH
Confidence 1 11123346677777777776643 332221 122333333444444456666666555543 2333322
Q ss_pred HHHHHHhc-------CCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 048794 267 TLICGLLR-------LDRVEEALEVFNNMEIL------GVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR 326 (967)
Q Consensus 267 ~ll~~~~~-------~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 326 (967)
.-+.-..+ ..+++.+.+-+...... ...+-...+..++..+.+.|++-.....++++...
T Consensus 269 ~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 269 WDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred HHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 22222221 22333333332222111 11233345666777778888888888777776544
No 452
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=44.61 E-value=12 Score=36.41 Aligned_cols=66 Identities=15% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhccccc
Q 048794 893 LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASSCT 958 (967)
Q Consensus 893 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 958 (967)
......+-..+.+.++++.|....++.+.++|++|.. -..|-+|...|-+.-|.......+++-|.
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.19 E-value=1.2e+02 Score=32.36 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=25.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-------CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSG-------GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML 780 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 780 (967)
..++-.||+..|++.++.+--. -+.....++.-++-+|.-.+++.+|++.|..++
T Consensus 130 Rvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555432211 011122344445555555555555555555544
No 454
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.08 E-value=3.7e+02 Score=27.54 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=24.8
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCChhcH--HHHHHHHHcCCCHHHHHHHHHHHHH
Q 048794 730 KSNSIDKAMDLFYNLVSG---GFSPTPCTY--GPLIDGLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 781 (967)
+.++.++|++.++++... ...|+...| ..++.++...|+..++.+.+.+..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 444556666665555543 112222222 2334445555555555555555544
No 455
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.00 E-value=6.9e+02 Score=30.63 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=15.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 048794 23 IFKALSLKGGLRRASFALEKMRAAG 47 (967)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~ 47 (967)
.++.+...++|.+| |.-|++..
T Consensus 700 ~ir~~Ld~~~Y~~A---f~~~RkhR 721 (928)
T PF04762_consen 700 GIRKLLDAKDYKEA---FELCRKHR 721 (928)
T ss_pred HHHHHHhhccHHHH---HHHHHHhc
Confidence 35777888888888 55555543
No 456
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=43.92 E-value=3.8e+02 Score=27.52 Aligned_cols=284 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh------CC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccC----CCCCCHHHH
Q 048794 444 LSGLGKEGQVQKAIELFEGMTD------HG---CFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPR----NCWPDVLTY 510 (967)
Q Consensus 444 ~~~~~~~g~~~~a~~~~~~~~~------~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 510 (967)
+......++.+++..++..+.. .+ +.....+...+...+.+.|+.++-..++....+. +-.......
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHhh-cCcHhHHHHHHHHHHhhcCCChhHHHh------HHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhh
Q 048794 511 NTIIYGLVK-EQRVKDAIWFFHQMRKWLYPDHITLCT------LLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDL 583 (967)
Q Consensus 511 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 583 (967)
+.++..+.. .+..+.-+.+...+.++-.....++.. ++..|...++|.+|+.+...
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~----------------- 153 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALIND----------------- 153 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------
Q ss_pred hhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 048794 584 VGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHA 663 (967)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 663 (967)
+.+++.+-.....-+.++..-...|....+
T Consensus 154 --------------------------------------------------L~rElKKlDDK~lLvev~llESK~y~~l~N 183 (411)
T KOG1463|consen 154 --------------------------------------------------LLRELKKLDDKILLVEVHLLESKAYHALRN 183 (411)
T ss_pred --------------------------------------------------HHHHHHhcccccceeeehhhhhHHHHHHhc
Q ss_pred hHHHHHHHHHHHHc----CCCcCHhhHHHHHH--HHHccCChHHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhcC
Q 048794 664 TEMGLDLFTTMKNA----GCAPDISTYNLLLD--GYGKSGRVEELLKLYEEMSFRGCKPNTI-----SHNIVISGLVKSN 732 (967)
Q Consensus 664 ~~~A~~~~~~~~~~----~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~ 732 (967)
..+|..-+...... -.+|-..+-.-+.+ .++...++.-|..+|-++.+..-..+.. ++..++-+-...+
T Consensus 184 l~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln 263 (411)
T KOG1463|consen 184 LPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN 263 (411)
T ss_pred chhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc
Q ss_pred CHHHHHHHHHHHHhC-CCCCChhcHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 733 SIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSK--SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
..++.-.++..-... ...++..+...++.++.+ ..+++.|+.-|+.-+.. |+.+..-+...|
T Consensus 264 ~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~----D~ivr~Hl~~Ly 328 (411)
T KOG1463|consen 264 LPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAE----DPIVRSHLQSLY 328 (411)
T ss_pred CHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhc----ChHHHHHHHHHH
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.60 E-value=3.5e+02 Score=27.02 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHH
Q 048794 156 DVVTYTVLIDALCTAGRLDQAKEIF 180 (967)
Q Consensus 156 ~~~~~~~l~~~~~~~g~~~~A~~~~ 180 (967)
+...+..+...+.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5556666677777777776666554
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.43 E-value=4.4e+02 Score=28.20 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C----C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048794 123 YTFTICIRILGRAGKIDEAYRILKRMDDE--G----C-GPDVVTYTVLIDALCTAGRLDQAKEIFLKMK 184 (967)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 184 (967)
.+...+++.++-.||+..|+++++.+.-. + + ...+.++..+.-+|.-.+++.+|.+.|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889999999999999976432 1 1 2244567778888889999999999998875
No 459
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.43 E-value=5.2e+02 Score=31.63 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=55.7
Q ss_pred cHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSG--RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDC 832 (967)
Q Consensus 755 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 832 (967)
....++.+|.+.+ ++++|+..+.++.+. +.......+...+- +-++.++|+.++.. -|.. ..++-+
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~---YDl~--Lal~VA 881 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNKLYDVALGT---YDLE--LALMVA 881 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHHHHHHHhhh---cCHH--HHHHHH
Confidence 4556677777776 677777777777754 22222222222221 13344455555431 1111 123334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDE 883 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 883 (967)
-..++++.|=+.++++..+. ++...-| .+=.+.|++++|++.+.+
T Consensus 882 q~SQkDPKEYLPfL~~L~~l--~~~~rry----~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 882 QQSQKDPKEYLPFLQELQKL--PPLYRRY----KIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHhccChHHHHHHHHHHHhC--Chhheee----eHhhhhCCHHHHHHHHHh
Confidence 44556677767777766552 2322111 123356777777776654
No 460
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.33 E-value=9.8e+02 Score=32.20 Aligned_cols=613 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh------------CCCC
Q 048794 122 VYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKA------------SSHQ 189 (967)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~ 189 (967)
...|...+-.++.......-.....-+.+.+...+...+-.++.-..-...-++-.++.+++.. .+..
T Consensus 1241 ~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~~~~~~t~ns~~~~ 1320 (2382)
T KOG0890|consen 1241 LSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLDEAATNTINSRGTA 1320 (2382)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhccccccccccccc
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 190 PDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLI 269 (967)
Q Consensus 190 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 269 (967)
.|..........+-..+++.+-..---...+.-...-..-|...+..-....+++.....++.+.+. .+.
T Consensus 1321 ~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~~~~~~~Tt~~~~~~~v~~fL~~iP~~----------tLa 1390 (2382)
T KOG0890|consen 1321 SDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFWKSIMSWTTTGEDIEGVQSFLDLIPSD----------TLA 1390 (2382)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhheeeeccccCCCchhhhHHHHhhccHH----------HHH
Q ss_pred HHHhcCCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 048794 270 CGLLRLDRVEEALEVFNN----MEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAET 345 (967)
Q Consensus 270 ~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (967)
.+-.+.+.+.+|...++. ..+. ......+..+...|+.-++++....+....... .....-+......
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~------~sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD------PSLYQQILEHEAS 1462 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC------ccHHHHHHHHHhh
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 346 GRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMF 425 (967)
Q Consensus 346 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 425 (967)
|++..|...|+.+.+.+ ++....++.++..-...+.++......+......-+--....+.-+.+--+.++++......
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHH---------HHHHHHHHHhcCCHHHHHHHHH
Q 048794 426 CRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVT---------FNTLLHCLCKNEEVDLAMKMLY 496 (967)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~~A~~~~~ 496 (967)
. +.+...-..--...+..-....+.-.-.+.++.+.+.-+.|=... |..+++.+.-..-......+..
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred hhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCC-------hhHHHhHHHHHHhcCChhHHHHHHHHHHh
Q 048794 497 EMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD-------HITLCTLLPGVVKDGQIEDAFRLAKCSIY 569 (967)
Q Consensus 497 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 569 (967)
.-...+...+...|...+..-....+..+-+-.+++..-...-+ ...|.+.++....+|.++.|...+-++.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Q ss_pred hcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHH
Q 048794 570 QIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLE 649 (967)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 649 (967)
...+.+....+..+...|+...|..++++.++.........
T Consensus 1699 ---------------------------------------~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1699 ---------------------------------------SRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred ---------------------------------------cccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Q ss_pred ---------------HHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCc-CHhhHHHHHHHHHc------------cCCh
Q 048794 650 ---------------MYNYLIHGLLEVHA--TEMGLDLFTTMKNAGCAP-DISTYNLLLDGYGK------------SGRV 699 (967)
Q Consensus 650 ---------------~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~------------~g~~ 699 (967)
+...+.......++ ..+.++.|..+..- -| ....+..++..|.+ .|++
T Consensus 1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--l~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~ 1817 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--LPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRV 1817 (2382)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--cccccCceeeHHHHHHHHhhhhhcccccccccH
Q ss_pred HH---HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCCHHHHHHH
Q 048794 700 EE---LLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPT-PCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 700 ~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
.. ++-.|..+...|-.-...+.-.++..... +.....-.+.+-....... ....+.++..+...=-.-.-.-+
T Consensus 1818 ~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD---~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta 1894 (2382)
T KOG0890|consen 1818 LSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLD---IGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTA 1894 (2382)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHh---hcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc
Q 048794 776 FEEMLDYGCKPNCVIYNILINGFGK 800 (967)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~l~~~~~~ 800 (967)
|.+++..=..|+..++..+.....+
T Consensus 1895 ~sQLlSRicH~~~dV~~vl~~II~~ 1919 (2382)
T KOG0890|consen 1895 YSQLLSRICHPNQDVARVLKHIIAK 1919 (2382)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHH
No 461
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=43.18 E-value=1.6e+02 Score=29.94 Aligned_cols=117 Identities=19% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYN-ILINGFGK-----TGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 840 (967)
+-++++..+++++...+. |.+.... .+..++.. .-+|..-..+|+-+.. ..|+..+-.+-+-+..+.--.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHH
Confidence 346778888888877653 5555333 33444432 2367777777777766 4666544444444555544566
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 841 DALHYFEELKLN-GLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 841 ~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++...+..... .++.-...+..-++.+.+.|+.++|...|+++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 666666655542 1222222334456777888888888888888774
No 462
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.45 E-value=1.8e+02 Score=32.34 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=62.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC---h--hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSPT---P--CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG 802 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~~---~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (967)
..+..++..+.+.|..-+.--+.+. . .....+.-+|.+..+++.|.++++++-+-. +.+..+-..+.......+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhc
Confidence 4566788888888877665422211 1 245667778889999999999999998742 124445555556667788
Q ss_pred CHHHHHHHHHHHHhC
Q 048794 803 DVETACELFKQMIKG 817 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~ 817 (967)
+-++|+.........
T Consensus 443 ~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSS 457 (872)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999888763
No 463
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=42.43 E-value=5.7e+02 Score=29.22 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 048794 422 WEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMT 499 (967)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (967)
...++.+...-+-.+......++..|.+.|-.+.+..+.+.+-..- ....-+...+..+.+.|+......+...+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444433223355556667777777777777777766654431 122234444555566666665555544444
No 464
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.78 E-value=3.9e+02 Score=32.99 Aligned_cols=159 Identities=14% Similarity=0.021 Sum_probs=99.2
Q ss_pred HHHHHccCChHHHHH------HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------HhCCCCCChhcH
Q 048794 690 LDGYGKSGRVEELLK------LYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNL-------VSGGFSPTPCTY 756 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~ 756 (967)
+......|.+.+|.+ ++......--+.....+..+...+.+.++.++|+..-.++ ...+.+.+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 334455566666655 4443322211223345666777777888888888765443 333445555677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----CCCC--C
Q 048794 757 GPLIDGLSKSGRLEEAKKLFEEMLDY-----G--CKPNCVIYNILINGFGKTGDVETACELFKQMIKG-----GIRP--D 822 (967)
Q Consensus 757 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p--~ 822 (967)
..+.......++...|...+.++... | .+|...+...+..++...+.++.|++.++.+... |..+ .
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 88887778888888999888887642 1 1233445666766666668899999999988762 2111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
...+..+++.....+++..|+...+.
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 34556667777777777666665544
No 465
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=41.54 E-value=2.7e+02 Score=28.68 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 804 VETACELFKQMIKGGIRPDL----KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
.++.+.+++.++.. -|+. ..|..++.+....|.++..+.+|++++..|-.|-.+....+++++-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34555666666552 4542 3455556666666666666666666666666665555555555544
No 466
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.80 E-value=2.2e+02 Score=23.97 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh----C-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIK----G-GIRPDL-KSY----SVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
++..|..++...|++++++..-++.+. . .+..|. ..| .+-+.++...|+.++|+..|+.+.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 455555566666666666666555542 1 122231 222 233444555566666666655543
No 467
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.79 E-value=1.7e+02 Score=22.96 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 048794 36 ASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRN 102 (967)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (967)
+.++++.+..+|+. +..-...+-.+--..|+.+.|..++..+. .| ..+|...+.++...|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEH 81 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCc
Confidence 44455555555543 22222222111123355555555555554 22 2244444444444443
No 468
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=39.10 E-value=74 Score=20.32 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
++..|+.+-...+++++|..-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 567788888888888888888888764
No 469
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=38.88 E-value=11 Score=36.93 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhccc
Q 048794 901 LNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASS 956 (967)
Q Consensus 901 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~ 956 (967)
.-..+.|+.++|..+++-++.++|++|.. ...|.......+.-+|-+-+.+.+.-+
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 34668899999999999999999999997 566666665555555555444444433
No 470
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.20 E-value=5.5e+02 Score=31.37 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=97.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCC-----hhcHHHHHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG-LVKSNSIDKAMDLFYNLVSGGFSPT-----PCTYGPLID 761 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~ 761 (967)
+++.+|...|+..+|+..|.++...-.+ +. .+..++.- .-.... +..|-.+. ..-|...++
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge-~~-aL~~lv~~~~p~~~s-----------v~dG~t~s~e~t~lhYYlkv~r 991 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGE-GN-ALRKLVYFLLPKRFS-----------VADGKTPSEELTALHYYLKVVR 991 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhcccc-HH-HHHHHHHHhcCCCCc-----------hhcCCCCCchHHHHHHHHHHHH
Confidence 4555678889999999999888754212 11 11111111 000000 01111111 123556677
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGDVETACELFKQMIKGGIRPDL----KSYSVLVDCL 833 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~ 833 (967)
.+.+.+..+.+.++-..+++. .++|. .+++.+...+...|.+-+|...+ ++ .||. .....++.++
T Consensus 992 lle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 992 LLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHHHHHHH
Confidence 888888899999888888765 22222 25666666677778877776554 33 4553 3456667777
Q ss_pred HhcCCHH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHH-HHHHHH
Q 048794 834 CMVGRVD------------DALH-YFEELKLNGLDADTISYNFMING-LGRSGRIEEALSL-FDEMKK 886 (967)
Q Consensus 834 ~~~g~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~-~~~~~~ 886 (967)
+..|.++ +... +++.+.... +.....|..+..+ +...+++.+|..+ |+.+.+
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~-~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSS-PSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 7777654 3444 333333221 2233334444444 5678888777655 444443
No 471
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.97 E-value=87 Score=29.49 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 808 CELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
++..++.++ ..|+..++..++.++...|+.++|.++..++..
T Consensus 131 ~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 131 IEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444 456666666666666666777777666666654
No 472
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.70 E-value=86 Score=22.76 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=16.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMS 710 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 710 (967)
|..-...++.++.+.|++++|.++..++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455566666666666666666554
No 473
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=37.44 E-value=5.3e+02 Score=27.40 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=27.4
Q ss_pred ChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 048794 717 NTISHNIVISGLVK---SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG 767 (967)
Q Consensus 717 ~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 767 (967)
+-..+..+++++-+ -.+.+.|+-++.+|+..|-+|.-..-..++.++..-|
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 43455555555543 3556666777777776654454444444444444444
No 474
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=37.18 E-value=11 Score=42.04 Aligned_cols=92 Identities=15% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 048794 757 GPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILIN--GFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDC 832 (967)
Q Consensus 757 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 832 (967)
..-+.++.+.|+++.|..++.++......+.......++. .....|+++.|++.+.........+. ...+...+.+
T Consensus 28 L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a 107 (536)
T PF04348_consen 28 LLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQA 107 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHH
Confidence 3446677888888888888888774433444444334433 35567888888888875333223333 2334455667
Q ss_pred HHhcCCHHHHHHHHHH
Q 048794 833 LCMVGRVDDALHYFEE 848 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~ 848 (967)
+...|++-+|.+.+-.
T Consensus 108 ~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 108 YEQQGDPLAAARERIA 123 (536)
T ss_dssp ----------------
T ss_pred HHhcCCHHHHHHHHHH
Confidence 7777777666655443
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.87 E-value=2.5e+02 Score=25.89 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=14.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 048794 130 RILGRAGKIDEAYRILKRMDD 150 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~ 150 (967)
-.|++.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 456667777777777776665
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.79 E-value=1.9e+02 Score=33.71 Aligned_cols=124 Identities=16% Similarity=0.103 Sum_probs=63.7
Q ss_pred HHHHHHHccCCCCcccHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048794 4 VFDLMQKQIINRDLSTYL----TIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVV 79 (967)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 79 (967)
+.+++|+.|.|.-.-.|- +-|.-..+.|+++.|++. +++.+ +..+|..|.+..+.+|+.+=|.-.|++..
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~---akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEA---AKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHH---HHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 445566666655332222 334445566666666433 33332 45667777777777777776666666654
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 80 SEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRM 148 (967)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (967)
.. ..|...|.-.|+.+...++...+...+ |... ......-.|++++-.++++..
T Consensus 700 nf---------ekLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~ 753 (1202)
T KOG0292|consen 700 NF---------EKLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENG 753 (1202)
T ss_pred hh---------hheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhc
Confidence 32 222223445566666666655554332 2221 111222346666666665543
No 477
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.37 E-value=1.6e+02 Score=29.15 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
.++.-|.+.|++++|.++|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555555543
No 478
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.20 E-value=82 Score=22.85 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
|.......+.+|...|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444455555555555555555555543
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.89 E-value=1.8e+02 Score=25.80 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 048794 39 ALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRR 101 (967)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (967)
+...+++.|.++++. -..++.++...+.+-.|.++|+.+.+.+...+..|--..+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455555554433 33455666666666677777777766655444444333333343333
No 480
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.02 E-value=1.5e+02 Score=20.10 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=14.3
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048794 63 LQSGFCREALAVYKRVVSEGIKPSLKTYSAL 93 (967)
Q Consensus 63 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (967)
.+.|-..++..++++|.+.|+..+...+..+
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 3344444444555555444444444444433
No 481
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.66 E-value=5.4e+02 Score=26.40 Aligned_cols=118 Identities=12% Similarity=0.144 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHH-HHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYG-PLIDGLSK-----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVE 805 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 805 (967)
+-++++...+.++...+. +.+.... .+..++.. .-+|.....+|+-+... .|++++-.+=+-+..+..-.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHHHHHHhhhHH
Confidence 345666666666665543 3332222 22222222 12455566666666553 344442222222333333445
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 806 TACELFKQMIKGG-IRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 806 ~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.++...+.+...+ ..--...+..-+..+.+.|+.++|..-|++++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 5666666555421 1111112233456666667777777777666653
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.22 E-value=1.4e+02 Score=26.48 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=46.4
Q ss_pred hHHHHHHHccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 048794 3 VVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGF 67 (967)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 67 (967)
.+...++..|+.+.. --..+++.+.+.++.-.|.++++.+++.++..+..+...-+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 345666777775521 2235788888888888899999999999888777666666677776664
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.80 E-value=4.1e+02 Score=27.45 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=51.0
Q ss_pred CCC-HHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 766 SGR-LEEAKKLFEEMLDYGCKPNCV----IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 766 ~g~-~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 834 (967)
.|. .++...++.+++.. -|+.. .|..++.++...|.+++.+.+|++++..|-.|-......++.++-
T Consensus 115 eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 115 EGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred cCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 344 45777788887774 34543 688888888899999999999999999888887666666776655
No 484
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.79 E-value=1.2e+02 Score=32.48 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=12.3
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 048794 798 FGKTGDVETACELFKQMIK 816 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~ 816 (967)
+...|++.+|+..|+.++.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH 232 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3466777777777777654
No 485
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=32.58 E-value=1.8e+02 Score=32.07 Aligned_cols=102 Identities=15% Similarity=0.010 Sum_probs=61.9
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHh
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFM------INGLGR 870 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------~~~~~~ 870 (967)
+...+....+.......+.. +|+ ...+.+|+.+....|..-.+...+......-.+.+......+ ++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (620)
T COG3914 77 LAPLADSTLAFLAKRIPLSV--NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL 154 (620)
T ss_pred ccccccchhHHHHHhhhHhc--CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence 44555665666666666663 444 577888888777777766666555553322123344444444 555667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 871 SGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 871 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
.|+..++...+.+..+. .+..+.+...++..
T Consensus 155 l~~~~~~~~~l~~~~d~-~p~~~~~~~~~~~~ 185 (620)
T COG3914 155 LGRTAEAELALERAVDL-LPKYPRVLGALMTA 185 (620)
T ss_pred hccHHHHHHHHHHHHHh-hhhhhhhHhHHHHH
Confidence 77788888888877754 34445666666655
No 486
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.25 E-value=1e+02 Score=18.83 Aligned_cols=21 Identities=14% Similarity=0.638 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH
Q 048794 804 VETACELFKQMIKGGIRPDLKSY 826 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~~~~~ 826 (967)
++.|..+|++.+. +.|+..+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 3444444544444 33444443
No 487
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=31.72 E-value=7.2e+02 Score=27.49 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=46.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILING--FGKTGDVETACELFKQMIKGGIRPDLKS--YSVLVDCLCM 835 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~ 835 (967)
+.+..+.|+...|..++.++.. ...+.......++.+ ....+++..|.+.+.+.......++-.. |...+.+...
T Consensus 70 a~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea 148 (604)
T COG3107 70 ARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALEA 148 (604)
T ss_pred HHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHhc
Confidence 5667778888888888888764 234443444444333 4466788888888888765444555333 3344444444
Q ss_pred cCC
Q 048794 836 VGR 838 (967)
Q Consensus 836 ~g~ 838 (967)
.|+
T Consensus 149 ~~~ 151 (604)
T COG3107 149 RGD 151 (604)
T ss_pred ccc
Confidence 444
No 488
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.64 E-value=4.3e+02 Score=25.41 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC
Q 048794 478 LLHCLCKNEEVDLAMKMLYEMTPR 501 (967)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~ 501 (967)
-++.....|+.+.|++.+..+.+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPE 93 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChH
Confidence 344456666777766666665443
No 489
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.38 E-value=3.3e+02 Score=25.16 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=10.9
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 048794 797 GFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~ 816 (967)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34555555555555555544
No 490
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.09 E-value=3.4e+02 Score=23.29 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 876 EALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
+..++|..|.+.|+.... ..|..++..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345566666655554443 334466666666666666666655
No 491
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.93 E-value=6.2e+02 Score=25.91 Aligned_cols=196 Identities=17% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHH
Q 048794 472 TVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGV 551 (967)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 551 (967)
+.+...|...-...++.+....++..+.+.+..| +-..++..+.++-=...++.|.+
T Consensus 22 sq~~FlLt~p~~~~~~~~~~e~l~~~Ird~~Map-------~Ye~lce~~~i~~D~~~l~~m~~---------------- 78 (393)
T KOG0687|consen 22 SQLRFLLTHPEVLGQKAAAREKLLAAIRDEDMAP-------LYEYLCESLVIKLDQDLLNSMKK---------------- 78 (393)
T ss_pred HHHHHHHcCccccCcCHHHHHHHHHHHHhcccch-------HHHHHHhhcceeccHHHHHHHHH----------------
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHH
Q 048794 552 VKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAA 631 (967)
Q Consensus 552 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 631 (967)
....+.++-
T Consensus 79 -----------------------------------------------------------------------~neeki~el 87 (393)
T KOG0687|consen 79 -----------------------------------------------------------------------ANEEKIKEL 87 (393)
T ss_pred -----------------------------------------------------------------------hhHHHHHHH
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcCHh-hHHHHHHHHHccCChHHHHHHH
Q 048794 632 KDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA----GCAPDIS-TYNLLLDGYGKSGRVEELLKLY 706 (967)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 706 (967)
.+..+...+..|-..-..++...+..|++-|+.+.|++.+.+..++ |.+.|+. ....++-.|....-..+-++-.
T Consensus 88 d~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ieka 167 (393)
T KOG0687|consen 88 DEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKA 167 (393)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHH
Q ss_pred HHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 707 EEMSFRGCKPNTISHNIVISG--LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 707 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+.+.+.|..-+.........+ +....++.+|-.+|-..++.-.......|...+.
T Consensus 168 k~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 168 KSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
No 492
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.67 E-value=3e+02 Score=22.20 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=27.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
+.++++...+....+-....|+-.|.+.|+-+.|.+-|+.=.. +.|.+..
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~ 107 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGV 107 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchh
Confidence 4444444443333344445566667777777777777765543 4555544
No 493
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.45 E-value=5.6e+02 Score=25.27 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKG----GIR-PDLKSYSVLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
....++.-|...|++++|+++|+.+... |.. +...+...+..++.+.|+.+..+...-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556788899999999999999998642 211 12344556667777778777766654443
No 494
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.95 E-value=5.1e+02 Score=26.38 Aligned_cols=154 Identities=11% Similarity=0.103 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048794 18 STYLTIFKALSLKGGLRRASFALEKMRAAGFVLN---AYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALM 94 (967)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 94 (967)
..+..+-....-..++..+.......++.=-..+ ...--.++....+..+..+.+..+..+.. .......+
T Consensus 61 ~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l 134 (291)
T PF10475_consen 61 SFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRL 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 3344444444444455555555555443210000 11122344445555555555555555543 23444556
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048794 95 VAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGK-IDE----AYRILKRMDDEGCGPDVVTYTVLIDALCT 169 (967)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (967)
..+...|+|..|.+++.+....--. -.-+..+-..-.+..+ .+. ....|..+.. .-|+..|..+..+|.-
T Consensus 135 ~~ll~~~dy~~Al~li~~~~~~l~~--l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~l 209 (291)
T PF10475_consen 135 QELLEEGDYPGALDLIEECQQLLEE--LKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQL 209 (291)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHh--cccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH
Confidence 6677888888888888877654101 1111111111111111 111 1222222222 3577888888888888
Q ss_pred cCChHHHHHHHHH
Q 048794 170 AGRLDQAKEIFLK 182 (967)
Q Consensus 170 ~g~~~~A~~~~~~ 182 (967)
.|+...+.+-+..
T Consensus 210 Lgk~~~~~dkl~~ 222 (291)
T PF10475_consen 210 LGKTQSAMDKLQM 222 (291)
T ss_pred HhhhHHHHHHHHH
Confidence 8877666544333
No 495
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=28.06 E-value=6.4e+02 Score=25.48 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 048794 474 TFNTLLHCLCKNEEVDLA 491 (967)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A 491 (967)
.|..|+.++|.+|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455666666666665543
No 496
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.65 E-value=6.7e+02 Score=25.52 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----------------------CCC
Q 048794 770 EEAKKLFEEMLD-------YGCKPNCVIYNILINGFGKTGDVETACELFKQMIK-----------------------GGI 819 (967)
Q Consensus 770 ~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------------------~~~ 819 (967)
++-..++++++. ..+..+......++. ...|+...|+..++.+.. ...
T Consensus 42 ~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~--~a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~y 119 (300)
T PRK14700 42 VATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN--YNEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDF 119 (300)
T ss_pred HHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH--hcCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcc
Q ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCC
Q 048794 820 RPDLKSYSVLVDCLCMV---GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG-----RIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 820 ~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~ 891 (967)
.-+...++.++.++.++ .+.|.|+-++-+|++.|.+|...+...+.-+.-.-| -..-|...++.+...|+|.
T Consensus 120 Dk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PE 199 (300)
T PRK14700 120 HREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPE 199 (300)
T ss_pred cCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChH
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 892 DLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
....+...+--+...-+-..+...+.++++
T Consensus 200 a~i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 200 GRLVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
No 497
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.43 E-value=1e+03 Score=27.73 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 048794 409 IDTLYKADRVDEAWEMFCRMKDMKLAP---TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKN 485 (967)
Q Consensus 409 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (967)
+..+.+.+.+++|+++.+..... .+ -......++..+...|++++|-...-.|... +...|......+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55667888899999988765542 22 3455667788888889999998888777643 556666666666666
Q ss_pred CCHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhh
Q 048794 486 EEVDLAMKMLYEMTPRN-CWPDVLTYNTIIYGLVK 519 (967)
Q Consensus 486 g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 519 (967)
+....... .++.+ ...++.+|..++-.+..
T Consensus 437 ~~l~~Ia~----~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP----YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc----cCCCCCcccCchHHHHHHHHHHH
Confidence 65543222 23332 22456677777766665
No 498
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.30 E-value=2.5e+02 Score=26.46 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048794 21 LTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVV 79 (967)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 79 (967)
+.+++.+..+|+.+.|-.+|.-+.+.....-...|..-+..+.+.+.-....+.++.+.
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 35667777777777777777777765443333567666666666665555445555543
No 499
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.05 E-value=6.9e+02 Score=25.49 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=41.8
Q ss_pred chHHHHHHHHhhccHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 614 VVVPIIKLFCRQKKALAAKDLFVKFTENLGVTS-----TLEMYNYLIHGLLEVHATEMGLDLFTTM 674 (967)
Q Consensus 614 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 674 (967)
+...++..|-+.+++.+|-..+..+-...|... ....+-.++..|.+.++..+|..+..+.
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 456788899999999999888877644432211 1234555677788888888877766544
No 500
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.00 E-value=1.2e+03 Score=27.83 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=45.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 048794 59 IHFILQSGFCREALAVYKRVVSEGIKPSL--KTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAG 136 (967)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 136 (967)
=..|.+.|+|+.|++..+.- |+. -++..-...+.+.+++..|.+++.++.. .+..+.--+....
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcC
Confidence 34578888888888776433 222 2344445667788899999999988732 2333444455556
Q ss_pred CHHHHHHHHHH
Q 048794 137 KIDEAYRILKR 147 (967)
Q Consensus 137 ~~~~A~~~~~~ 147 (967)
+.+....++.+
T Consensus 431 ~~~~L~~~L~K 441 (911)
T KOG2034|consen 431 QERALRTFLDK 441 (911)
T ss_pred CHHHHHHHHHH
Confidence 65544444433
Done!